locus_tag	old_locus_tag	gene	Name	start	end	strand	product	note	type	ID	NCBI
CH54_1	CH54_1		CH54_1	49	786	+	methyltransferase small domain protein	[R] COG1092 Predicted SAM-dependent methyltransferases	gene	gene0	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1
CH54_10	CH54_10		CH54_10	9671	11254	-	hypothetical protein	lon protease (S16) C-terminal proteolytic domain protein~[O] COG1067 Predicted ATP-dependent protease	gene	gene9	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_10
CH54_100	CH54_100		CH54_100	106659	107963	+	pyridine nucleotide-disulfide oxidoreductase family protein	[C] COG1252 NADH dehydrogenase%2C FAD-containing subunit	gene	gene99	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_100
CH54_1000	CH54_1000		CH54_1000	1091293	1091700	+	lrgA family protein	[R] COG1380 Putative effector of murein hydrolase LrgA	gene	gene996	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1000
CH54_1001	CH54_1001		CH54_1001	1091697	1092392	+	lrgB-like family protein	[M] COG1346 Putative effector of murein hydrolase	gene	gene997	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1001
CH54_1002	CH54_1002	cdd	cdd	1092532	1093416	+	cytidine deaminase	cyt_deam_dimer: cytidine deaminase~[F] COG0295 Cytidine deaminase	gene	gene998	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1002
CH54_1003	CH54_1003		CH54_1003	1093447	1093608	-	hypothetical protein		gene	gene999	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1003
CH54_1004	CH54_1004		CH54_1004	1093832	1095529	+	malic enzyme%2C NAD binding domain protein	[C] COG0281 Malic enzyme	gene	gene1000	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1004
CH54_1005	CH54_1005		CH54_1005	1095796	1096611	+	hypothetical protein	conserved hypothetical protein~[S] COG2949 Uncharacterized membrane protein	gene	gene1001	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1005
CH54_1006	CH54_1006	hypC	hypC	1097042	1097329	-	hydrogenase assembly chaperone HypC/HupF	hypC_hupF: hydrogenase assembly chaperone HypC/HupF~[O] COG0298 Hydrogenase maturation factor	gene	gene1002	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1006
CH54_1007	CH54_1007	hypA	hypA	1097370	1097717	-	hydrogenase nickel insertion protein HypA	hypA: hydrogenase nickel insertion protein HypA~[R] COG0375 Zn finger protein HypA/HybF (possibly regulating hydrogenase expression)	gene	gene1003	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1007
CH54_1008	CH54_1008		CH54_1008	1098124	1098765	+	4Fe-4S dicluster domain protein	[C] COG1142 Fe-S-cluster-containing hydrogenase components 2	gene	gene1004	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1008
CH54_1009	CH54_1009		CH54_1009	1098762	1100789	+	NADH-Ubiquinone/plastoquinone (complex I)%2C various chains family protein	[CP] COG0651 Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter%2C MnhD subunit	gene	gene1005	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1009
CH54_101	CH54_101		CH54_101	108110	108325	-	hypothetical protein		gene	gene100	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_101
CH54_1010	CH54_1010		CH54_1010	1100801	1101754	+	NADH dehydrogenase family protein	[C] COG0650 Formate hydrogenlyase subunit 4	gene	gene1006	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1010
CH54_1011	CH54_1011		CH54_1011	1101773	1103242	+	NADH-Ubiquinone/plastoquinone (complex I)%2C various chains family protein	[CP] COG1009 NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter%2C MnhA subunit	gene	gene1007	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1011
CH54_1012	CH54_1012		CH54_1012	1103254	1103919	+	NADH-ubiquinone/plastoquinone oxidoreductase chain 4L family protein	[C] COG4237 Hydrogenase 4 membrane component (E)	gene	gene1008	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1012
CH54_1013	CH54_1013		CH54_1013	1103924	1105555	+	NADH-Ubiquinone/plastoquinone (complex I)%2C various chains family protein	[CP] COG0651 Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter%2C MnhD subunit	gene	gene1009	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1013
CH54_1014	CH54_1014		CH54_1014	1105557	1107341	+	nickel-dependent hydrogenase family protein	[C] COG3261 Ni%2CFe-hydrogenase III large subunit	gene	gene1010	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1014
CH54_1015	CH54_1015		CH54_1015	1107353	1107943	+	4Fe-4S dicluster domain protein	[C] COG1143 Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I)	gene	gene1011	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1015
CH54_1016	CH54_1016		CH54_1016	1107940	1108728	+	NADH ubiquinone oxidoreductase%2C 20 Kd subunit	[C] COG3260 Ni%2CFe-hydrogenase III small subunit	gene	gene1012	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1016
CH54_1017	CH54_1017		CH54_1017	1108751	1109155	+	formate hydrogenlyase maturation HycH family protein		gene	gene1013	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1017
CH54_1018	CH54_1018	hycI	hycI	1109152	1109625	+	hydrogenase maturation peptidase HycI	hycI: hydrogenase maturation peptidase HycI~[C] COG0680 Ni%2CFe-hydrogenase maturation factor	gene	gene1014	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1018
CH54_1019	CH54_1019		CH54_1019	1109865	1110407	+	4Fe-4S dicluster domain protein	[C] COG1142 Fe-S-cluster-containing hydrogenase components 2	gene	gene1015	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1019
CH54_102	CH54_102		CH54_102	108573	109112	+	glycine zipper 2TM domain protein	[S] COG3134 Predicted outer membrane lipoprotein	gene	gene101	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_102
CH54_1020	CH54_1020		CH54_1020	1110424	1112571	+	formate dehydrogenase%2C alpha subunit	fdh-alpha: formate dehydrogenase%2C alpha subunit~[C] COG0243 Anaerobic dehydrogenases%2C typically selenocysteine-containing	gene	gene1016	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1020
CH54_1021	CH54_1021		CH54_1021	1112771	1114930	-	AAA domain family protein	[KT] COG3604 Transcriptional regulator containing GAF%2C AAA-type ATPase%2C and DNA binding domains	gene	gene1017	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1021
CH54_1022	CH54_1022	focA	focA	1115357	1116211	+	formate transporter FocA	formate_focA: formate transporter FocA~[P] COG2116 Formate/nitrite family of transporters	gene	gene1018	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1022
CH54_1023	CH54_1023		CH54_1023	1116323	1117333	-	branched-chain amino acid transport system / permease component family protein	[G] COG4211 ABC-type glucose/galactose transport system%2C permease component	gene	gene1019	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1023
CH54_1024	CH54_1024		CH54_1024	1117354	1118874	-	ABC transporter family protein	[G] COG1129 ABC-type sugar transport system%2C ATPase component	gene	gene1020	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1024
CH54_1025	CH54_1025		CH54_1025	1119081	1120073	-	periplasmic binding domain protein	[G] COG1879 ABC-type sugar transport system%2C periplasmic component	gene	gene1021	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1025
CH54_1026	CH54_1026		CH54_1026	1120427	1121464	-	bacterial regulatory s%2C lacI family protein	[K] COG1609 Transcriptional regulators	gene	gene1022	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1026
CH54_1027	CH54_1027		CH54_1027	1121648	1122814	-	hypothetical protein	conserved hypothetical protein~[S] COG2311 Predicted membrane protein	gene	gene1023	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1027
CH54_1028	CH54_1028	folE	folE	1122884	1123546	-	GTP cyclohydrolase I	folE: GTP cyclohydrolase I~[H] COG0302 GTP cyclohydrolase I	gene	gene1024	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1028
CH54_1029	CH54_1029		CH54_1029	1123700	1124872	-	major Facilitator Superfamily protein	[GEPR] COG0477 Permeases of the major facilitator superfamily	gene	gene1025	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1029
CH54_103	CH54_103	mfd	mfd	109254	112700	-	transcription-repair coupling factor	mfd: transcription-repair coupling factor~[LK] COG1197 Transcription-repair coupling factor (superfamily II helicase)	gene	gene102	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_103
CH54_1030	CH54_1030		CH54_1030	1125010	1125879	+	bacterial regulatory helix-turn-helix%2C lysR family protein	[K] COG0583 Transcriptional regulator	gene	gene1026	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1030
CH54_1031	CH54_1031		CH54_1031	1126024	1127178	+	S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase	adh_III_F_hyde: S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase~[C] COG1062 Zn-dependent alcohol dehydrogenases%2C class III	gene	gene1027	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1031
CH54_1032	CH54_1032	fghA	fghA	1127190	1128032	+	S-formylglutathione hydrolase	fghA_ester_D: S-formylglutathione hydrolase~[R] COG0627 Predicted esterase	gene	gene1028	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1032
CH54_1033	CH54_1033		CH54_1033	1128483	1128683	+	hypothetical protein		gene	gene1029	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1033
CH54_1034	CH54_1034		CH54_1034	1128825	1131197	+	putative membrane protein		gene	gene1030	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1034
CH54_1035	CH54_1035		CH54_1035	1131202	1132464	+	efflux transporter%2C RND family%2C MFP subunit	RND_mfp: efflux transporter%2C RND family%2C MFP subunit~[M] COG0845 Membrane-fusion protein	gene	gene1031	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1035
CH54_1036	CH54_1036		CH54_1036	1132466	1133125	+	ABC transporter family protein	[V] COG1136 ABC-type antimicrobial peptide transport system%2C ATPase component	gene	gene1032	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1036
CH54_1037	CH54_1037		CH54_1037	1133143	1134453	+	radical SAM additional 4Fe4S-binding SPASM domain protein	rSAM_more_4Fe4S: radical SAM additional 4Fe4S-binding SPASM domain protein~[R] COG0641 Arylsulfatase regulator (Fe-S oxidoreductase)	gene	gene1033	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1037
CH54_1038	CH54_1038		CH54_1038	1134496	1135815	-	MFS transporter%2C metabolite:H+ symporter family protein	2A0106: MFS transporter%2C metabolite:H+ symporter family protein~[GEPR] COG0477 Permeases of the major facilitator superfamily	gene	gene1034	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1038
CH54_1039	CH54_1039		CH54_1039	1136137	1136676	-	hypothetical protein	conserved hypothetical protein~[S] COG3803 Uncharacterized protein conserved in bacteria	gene	gene1035	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1039
CH54_104	CH54_104		CH54_104	112897	114099	+	liporeleasing system%2C transmembrane%2C LolC/E family protein	lolCE: liporeleasing system%2C transmembrane%2C LolC/E family protein~[M] COG4591 ABC-type transport system%2C involved in lipoprotein release%2C permease component	gene	gene103	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_104
CH54_1040	CH54_1040		CH54_1040	1136875	1138110	+	molybdenum cofactor synthesis domain protein	molyb_syn: molybdenum cofactor synthesis domain protein~[H] COG0303 Molybdopterin biosynthesis enzyme	gene	gene1036	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1040
CH54_1041	CH54_1041	moeB	moeB	1138147	1138902	+	molybdopterin synthase sulfurylase MoeB	moeB: molybdopterin synthase sulfurylase MoeB~[H] COG0476 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2	gene	gene1037	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1041
CH54_1042	CH54_1042	ccmA	ccmA	1138969	1140675	-	heme ABC exporter%2C ATP-binding protein CcmA	ccmA: heme ABC exporter%2C ATP-binding protein CcmA~[R] COG0488 ATPase components of ABC transporters with duplicated ATPase domains	gene	gene1038	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1042
CH54_1043	CH54_1043		CH54_1043	1140892	1141830	-	cation efflux family protein	[P] COG3965 Predicted Co/Zn/Cd cation transporters	gene	gene1039	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1043
CH54_1044	CH54_1044		CH54_1044	1142380	1142907	-	ompA-like transmembrane domain protein	[M] COG3637 Opacity protein and related surface antigens	gene	gene1040	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1044
CH54_1045	CH54_1045		CH54_1045	1143311	1144198	+	eamA-like transporter family protein	[R] COG5006 Predicted permease%2C DMT superfamily	gene	gene1041	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1045
CH54_1046	CH54_1046		CH54_1046	1144212	1144709	+	acetyltransferase domain protein	[KR] COG0454 Histone acetyltransferase HPA2 and related acetyltransferases	gene	gene1042	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1046
CH54_1047	CH54_1047		CH54_1047	1145078	1145638	+	fasciclin domain protein	[M] COG2335 Secreted and surface protein containing fasciclin-like repeats	gene	gene1043	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1047
CH54_1048	CH54_1048		CH54_1048	1145684	1146238	+	RNA polymerase sigma factor%2C sigma-70 family protein	sigma70-ECF: RNA polymerase sigma factor%2C sigma-70 family protein~[K] COG1595 DNA-directed RNA polymerase specialized sigma subunit%2C sigma24 homolog	gene	gene1044	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1048
CH54_1049	CH54_1049		CH54_1049	1146235	1146900	+	anti-sigma-K factor rskA family protein	[S] COG5343 Uncharacterized protein conserved in bacteria	gene	gene1045	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1049
CH54_105	CH54_105	lolD	lolD	114092	114796	+	liporeleasing system%2C ATP-binding protein	lolD_lipo_ex: liporeleasing system%2C ATP-binding protein~[V] COG1136 ABC-type antimicrobial peptide transport system%2C ATPase component	gene	gene104	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_105
CH54_1050	CH54_1050		CH54_1050	1146922	1147695	+	methyltransferase domain protein	[R] COG4106 Trans-aconitate methyltransferase	gene	gene1046	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1050
CH54_1051	CH54_1051		CH54_1051	1148013	1148525	+	ferritin-like domain protein	[P] COG0783 DNA-binding ferritin-like protein (oxidative damage protectant)	gene	gene1047	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1051
CH54_1052	CH54_1052		CH54_1052	1149029	1149772	+	bacterial extracellular solute-binding s%2C 3 family protein	[ET] COG0834 ABC-type amino acid transport/signal transduction systems%2C periplasmic component/domain	gene	gene1048	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1052
CH54_1053	CH54_1053		CH54_1053	1149840	1150496	+	amino ABC transporter%2C permease%2C 3-TM region%2C His/Glu/Gln/Arg/opine family domain protein	HEQRo_perm_3TM: amino ABC transporter%2C permease%2C 3-TM region%2C His/Glu/Gln/Arg/opine family domain protein~[E] COG0765 ABC-type amino acid transport system%2C permease component	gene	gene1049	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1053
CH54_1054	CH54_1054		CH54_1054	1150493	1151215	+	ABC transporter family protein	[E] COG1126 ABC-type polar amino acid transport system%2C ATPase component	gene	gene1050	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1054
CH54_1055	CH54_1055		CH54_1055	1151310	1152614	-	sensory box protein	[T] COG2202 FOG: PAS/PAC domain	gene	gene1051	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1055
CH54_1056	CH54_1056		CH54_1056	1153415	1154377	-	hypothetical protein	conserved hypothetical protein~[R] COG3129 Predicted SAM-dependent methyltransferase	gene	gene1052	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1056
CH54_1057	CH54_1057		CH54_1057	1154669	1154929	+	hypothetical protein	conserved hypothetical protein	gene	gene1053	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1057
CH54_1058	CH54_1058		CH54_1058	1155049	1156911	-	peptidase M3 family protein	[E] COG1164 Oligoendopeptidase F	gene	gene1054	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1058
CH54_1059	CH54_1059		CH54_1059	1157151	1158110	-	glycosyl transferase family%2C helical bundle domain protein	[E] COG0547 Anthranilate phosphoribosyltransferase	gene	gene1055	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1059
CH54_106	CH54_106	lolE	lolE	114802	116055	+	liporeleasing system%2C transmembrane protein LolE	lolE_release: liporeleasing system%2C transmembrane protein LolE~[M] COG4591 ABC-type transport system%2C involved in lipoprotein release%2C permease component	gene	gene105	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_106
CH54_1060	CH54_1060		CH54_1060	1158388	1159092	-	MIP channel s family protein	MIP: MIP channel s family protein~[G] COG0580 Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family)	gene	gene1056	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1060
CH54_1061	CH54_1061		CH54_1061	1159399	1161621	-	DEAD_2 family protein	[KL] COG1199 Rad3-related DNA helicases	gene	gene1057	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1061
CH54_1062	CH54_1062		CH54_1062	1161967	1163082	+	gram-negative porin family protein	[M] COG3203 Outer membrane protein (porin)	gene	gene1058	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1062
CH54_1063	CH54_1063		CH54_1063	1163214	1163486	-	putative exported protein		gene	gene1059	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1063
CH54_1064	CH54_1064		CH54_1064	1163805	1164695	+	eamA-like transporter family protein	[GER] COG0697 Permeases of the drug/metabolite transporter (DMT) superfamily	gene	gene1060	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1064
CH54_1065	CH54_1065		CH54_1065	1164827	1165009	+	hypothetical protein	conserved hypothetical protein	gene	gene1061	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1065
CH54_1066	CH54_1066		CH54_1066	1165494	1166288	-	ABC transporter%2C phosphonate%2C periplasmic substrate-binding family protein	[P] COG3221 ABC-type phosphate/phosphonate transport system%2C periplasmic component	gene	gene1062	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1066
CH54_1067	CH54_1067		CH54_1067	1166327	1167157	-	binding--dependent transport system inner membrane component family protein	[E] COG1174 ABC-type proline/glycine betaine transport systems%2C permease component	gene	gene1063	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1067
CH54_1068	CH54_1068		CH54_1068	1167154	1168098	-	ABC transporter family protein	[E] COG1125 ABC-type proline/glycine betaine transport systems%2C ATPase components	gene	gene1064	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1068
CH54_1069	CH54_1069		CH54_1069	1168095	1169249	-	binding--dependent transport system inner membrane component family protein	[E] COG1174 ABC-type proline/glycine betaine transport systems%2C permease component	gene	gene1065	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1069
CH54_107	CH54_107		CH54_107	116150	117064	+	glucokinase family protein	[KG] COG1940 Transcriptional regulator/sugar kinase	gene	gene106	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_107
CH54_1070	CH54_1070		CH54_1070	1169362	1170294	-	substrate binding domain of ABC-type glycine betaine transport system family protein	[M] COG1732 Periplasmic glycine betaine/choline-binding (lipo)protein of an ABC-type transport system (osmoprotectant binding protein)	gene	gene1066	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1070
CH54_1071	CH54_1071		CH54_1071	1170661	1171719	-	fatty acid desaturase family protein	[I] COG3239 Fatty acid desaturase	gene	gene1067	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1071
CH54_1072	CH54_1072		CH54_1072	1171876	1173006	-	hypothetical protein	oxidoreductase family%2C C-terminal alpha/beta domain protein~[R] COG0673 Predicted dehydrogenases and related proteins	gene	gene1068	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1072
CH54_1073	CH54_1073		CH54_1073	1173394	1174248	+	rhodanese-like domain protein	[P] COG2897 Rhodanese-related sulfurtransferase	gene	gene1069	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1073
CH54_1074	CH54_1074		CH54_1074	1174635	1175105	-	hypothetical protein	conserved hypothetical protein~[S] COG4807 Uncharacterized protein conserved in bacteria	gene	gene1070	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1074
CH54_1075	CH54_1075	phnE	phnE	1175359	1176264	-	phosphonate ABC transporter%2C permease protein PhnE	phnE: phosphonate ABC transporter%2C permease protein PhnE~[P] COG3639 ABC-type phosphate/phosphonate transport system%2C permease component	gene	gene1071	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1075
CH54_1076	CH54_1076	phnE	phnE	1176264	1177127	-	phosphonate ABC transporter%2C permease protein PhnE	phnE: phosphonate ABC transporter%2C permease protein PhnE~[P] COG3639 ABC-type phosphate/phosphonate transport system%2C permease component	gene	gene1072	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1076
CH54_1077	CH54_1077	phnD	phnD	1177197	1178126	-	phosphonate ABC transporter%2C periplasmic phosphonate binding protein	phnD: phosphonate ABC transporter%2C periplasmic phosphonate binding protein~[P] COG3221 ABC-type phosphate/phosphonate transport system%2C periplasmic component	gene	gene1073	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1077
CH54_1078	CH54_1078	phnC	phnC	1178163	1178999	-	phosphonate ABC transporter%2C ATP-binding protein	ABC_phnC: phosphonate ABC transporter%2C ATP-binding protein~[P] COG3638 ABC-type phosphate/phosphonate transport system%2C ATPase component	gene	gene1074	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1078
CH54_1079	CH54_1079		CH54_1079	1179200	1179448	-	transglycosylase associated family protein	[S] COG2261 Predicted membrane protein	gene	gene1075	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1079
CH54_108	CH54_108		CH54_108	117110	117946	+	sir2 family protein	[K] COG0846 NAD-dependent protein deacetylases%2C SIR2 family	gene	gene107	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_108
CH54_1080	CH54_1080		CH54_1080	1179603	1180706	-	suppressor of fused family protein		gene	gene1076	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1080
CH54_1081	CH54_1081		CH54_1081	1181083	1181424	+	HNH endonuclease family protein		gene	gene1077	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1081
CH54_1082	CH54_1082		CH54_1082	1181485	1182024	-	CYTH domain protein	[F] COG1437 Adenylate cyclase%2C class 2 (thermophilic)	gene	gene1078	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1082
CH54_1083	CH54_1083		CH54_1083	1182373	1184085	+	FAD binding domain protein	[C] COG0277 FAD/FMN-containing dehydrogenases	gene	gene1079	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1083
CH54_1084	CH54_1084		CH54_1084	1184430	1185398	-	D-alanyl-D-alanine carboxypeptidase family protein	[M] COG1686 D-alanyl-D-alanine carboxypeptidase	gene	gene1080	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1084
CH54_1085	CH54_1085		CH54_1085	1185771	1185947	+	putative membrane protein		gene	gene1081	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1085
CH54_1086	CH54_1086		CH54_1086	1186002	1187033	-	divalent cation transporter family protein	[P] COG2239 Mg/Co/Ni transporter MgtE (contains CBS domain)	gene	gene1082	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1086
CH54_1087	CH54_1087		CH54_1087	1187557	1188189	+	hypothetical protein		gene	gene1083	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1087
CH54_1088	CH54_1088		CH54_1088	1188272	1189204	-	dihydrouridine synthase family protein	[J] COG0042 tRNA-dihydrouridine synthase	gene	gene1084	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1088
CH54_1089	CH54_1089		CH54_1089	1189408	1190763	-	hypothetical protein	conserved hypothetical protein~[LKJ] COG0513 Superfamily II DNA and RNA helicases	gene	gene1085	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1089
CH54_109	CH54_109	pepT	pepT	118128	119363	+	peptidase T	peptidase-T: peptidase T~[E] COG2195 Di- and tripeptidases	gene	gene108	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_109
CH54_1090	CH54_1090		CH54_1090	1191270	1191980	+	bacterial regulatory s%2C tetR family protein	[K] COG1309 Transcriptional regulator	gene	gene1086	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1090
CH54_1091	CH54_1091		CH54_1091	1192273	1193259	+	efflux transporter%2C RND family%2C MFP subunit	RND_mfp: efflux transporter%2C RND family%2C MFP subunit~[M] COG0845 Membrane-fusion protein	gene	gene1087	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1091
CH54_1092	CH54_1092	ccmA	ccmA	1193273	1195024	+	heme ABC exporter%2C ATP-binding protein CcmA	ccmA: heme ABC exporter%2C ATP-binding protein CcmA~[V] COG1131 ABC-type multidrug transport system%2C ATPase component	gene	gene1088	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1092
CH54_1093	CH54_1093		CH54_1093	1195021	1196211	+	ABC-2 type transporter family protein	[V] COG0842 ABC-type multidrug transport system%2C permease component	gene	gene1089	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1093
CH54_1094	CH54_1094		CH54_1094	1196245	1197351	+	ABC-2 type transporter family protein	[V] COG0842 ABC-type multidrug transport system%2C permease component	gene	gene1090	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1094
CH54_1095	CH54_1095		CH54_1095	1197468	1198178	-	inhibitor of apoptosis-promoting Bax1 family protein	[R] COG0670 Integral membrane protein%2C interacts with FtsH	gene	gene1091	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1095
CH54_1096	CH54_1096		CH54_1096	1198322	1198774	-	moaE family protein	[H] COG0314 Molybdopterin converting factor%2C large subunit	gene	gene1092	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1096
CH54_1097	CH54_1097	moaD	moaD	1198777	1199022	-	molybdopterin converting factor%2C subunit 1	moaD: molybdopterin converting factor%2C subunit 1~[H] COG1977 Molybdopterin converting factor%2C small subunit	gene	gene1093	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1097
CH54_1098	CH54_1098	moaC	moaC	1199019	1199498	-	molybdenum cofactor biosynthesis protein C	moaC: molybdenum cofactor biosynthesis protein C~[H] COG0315 Molybdenum cofactor biosynthesis enzyme	gene	gene1094	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1098
CH54_1099	CH54_1099	moaA	moaA	1199530	1200510	-	molybdenum cofactor biosynthesis protein A	moaA: molybdenum cofactor biosynthesis protein A~[H] COG2896 Molybdenum cofactor biosynthesis enzyme	gene	gene1095	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1099
CH54_11	CH54_11		CH54_11	11633	12088	+	organizer of macrodomain of Terminus of chromosome family protein	[S] COG3120 Uncharacterized protein conserved in bacteria	gene	gene10	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_11
CH54_110	CH54_110		CH54_110	119561	120682	-	cupin superfamily protein	[S] COG2850 Uncharacterized conserved protein	gene	gene109	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_110
CH54_1100	CH54_1100		CH54_1100	1201893	1202150	-	hypothetical protein	conserved hypothetical protein~[S] COG4628 Uncharacterized conserved protein	gene	gene1097	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1100
CH54_1101	CH54_1101		CH54_1101	1200964	1201896	+	hypothetical protein	cofD_related: conserved hypothetical family protein~[S] COG0391 Uncharacterized conserved protein	gene	gene1096	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1101
CH54_1102	CH54_1102	uvrB	uvrB	1202229	1204241	-	excinuclease ABC subunit B	uvrb: excinuclease ABC subunit B~[L] COG0556 Helicase subunit of the DNA excision repair complex	gene	gene1098	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1102
CH54_1103	CH54_1103		CH54_1103	1205197	1205907	+	ABC transporter family protein	[E] COG0410 ABC-type branched-chain amino acid transport systems%2C ATPase component	gene	gene1099	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1103
CH54_1104	CH54_1104	bioD	bioD	1206013	1206732	-	dethiobiotin synthase	bioD: dethiobiotin synthase~[H] COG0132 Dethiobiotin synthetase	gene	gene1100	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1104
CH54_1105	CH54_1105	bioC	bioC	1206710	1207537	-	malonyl-acyl carrier protein O-methyltransferase BioC	bioC: malonyl-acyl carrier protein O-methyltransferase BioC~[QR] COG0500 SAM-dependent methyltransferases	gene	gene1101	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1105
CH54_1106	CH54_1106	bioF	bioF	1207521	1208672	-	8-amino-7-oxononanoate synthase	bioF: 8-amino-7-oxononanoate synthase~[H] COG0156 7-keto-8-aminopelargonate synthetase and related enzymes	gene	gene1102	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1106
CH54_1107	CH54_1107	bioB	bioB	1208672	1209739	-	biotin synthase	bioB: biotin synthase~[H] COG0502 Biotin synthase and related enzymes	gene	gene1103	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1107
CH54_1108	CH54_1108	bioA	bioA	1209839	1211116	+	adenosylmethionine-8-amino-7-oxononanoate transaminase	bioA: adenosylmethionine-8-amino-7-oxononanoate transaminase~[H] COG0161 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase	gene	gene1104	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1108
CH54_1109	CH54_1109		CH54_1109	1211245	1212240	-	lactonase%2C 7-bladed beta-propeller family protein	[G] COG2706 3-carboxymuconate cyclase	gene	gene1105	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1109
CH54_111	CH54_111		CH54_111	120767	122173	-	HAMP domain protein	[T] COG0642 Signal transduction histidine kinase	gene	gene110	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_111
CH54_1110	CH54_1110		CH54_1110	1212468	1213289	+	Cof-like hydrolase family protein	cof-sub: Cof-like hydrolase family protein~[R] COG0561 Predicted hydrolases of the HAD superfamily	gene	gene1106	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1110
CH54_1111	CH54_1111	modC	modC	1213366	1214430	-	molybdate ABC transporter%2C ATP-binding protein	modC_ABC: molybdate ABC transporter%2C ATP-binding protein~[P] COG4148 ABC-type molybdate transport system%2C ATPase component	gene	gene1107	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1111
CH54_1112	CH54_1112	modB	modB	1214424	1215119	-	molybdate ABC transporter%2C permease protein	modB_ABC: molybdate ABC transporter%2C permease protein~[P] COG4149 ABC-type molybdate transport system%2C permease component	gene	gene1108	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1112
CH54_1113	CH54_1113	modA	modA	1215119	1215895	-	molybdate ABC transporter%2C periplasmic molybdate-binding protein	modA: molybdate ABC transporter%2C periplasmic molybdate-binding protein~[P] COG0725 ABC-type molybdate transport system%2C periplasmic component	gene	gene1109	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1113
CH54_1114	CH54_1114		CH54_1114	1216114	1216254	-	hypothetical protein	conserved hypothetical protein	gene	gene1110	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1114
CH54_1115	CH54_1115		CH54_1115	1216490	1217281	+	molybdenum-pterin binding domain protein	mop: molybdenum-pterin binding domain protein~[R] COG2005 N-terminal domain of molybdenum-binding protein	gene	gene1111	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1115
CH54_1116	CH54_1116		CH54_1116	1217390	1218883	+	ABC transporter family protein	[P] COG1119 ABC-type molybdenum transport system%2C ATPase component/photorepair protein PhrA	gene	gene1112	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1116
CH54_1117	CH54_1117		CH54_1117	1219075	1219893	+	CAAX protease self-immunity family protein	[R] COG1266 Predicted metal-dependent membrane protease	gene	gene1113	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1117
CH54_1118	CH54_1118	galE	galE	1220244	1221260	+	UDP-glucose 4-epimerase GalE	galE: UDP-glucose 4-epimerase GalE~[M] COG1087 UDP-glucose 4-epimerase	gene	gene1114	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1118
CH54_1119	CH54_1119	galT	galT	1221270	1222358	+	galactose-1-phosphate uridylyltransferase	galT_1: galactose-1-phosphate uridylyltransferase~[C] COG1085 Galactose-1-phosphate uridylyltransferase	gene	gene1115	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1119
CH54_112	CH54_112		CH54_112	122227	122898	-	hypothetical protein	transcriptional regulatory%2C C terminal family protein~[TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain	gene	gene111	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_112
CH54_1120	CH54_1120	galK	galK	1222358	1223509	+	galactokinase	gal_kin: galactokinase~[G] COG0153 Galactokinase	gene	gene1116	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1120
CH54_1121	CH54_1121	galM	galM	1223503	1224567	+	galactose mutarotase	galM_Leloir: galactose mutarotase~[G] COG2017 Galactose mutarotase and related enzymes	gene	gene1117	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1121
CH54_1122	CH54_1122		CH54_1122	1224764	1225102	+	psiF repeat family protein		gene	gene1118	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1122
CH54_1123	CH54_1123		CH54_1123	1225317	1226069	+	phosphoglycerate mutase 1 family protein	pgm_1: phosphoglycerate mutase 1 family protein~[G] COG0588 Phosphoglycerate mutase 1	gene	gene1119	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1123
CH54_1124	CH54_1124		CH54_1124	1226315	1227364	-	3-deoxy-7-phosphoheptulonate synthase	aroFGH: 3-deoxy-7-phosphoheptulonate synthase~[E] COG0722 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase	gene	gene1120	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1124
CH54_1125	CH54_1125		CH54_1125	1227599	1228531	+	cation diffusion facilitator transporter family protein	CDF: cation diffusion facilitator transporter family protein~[P] COG1230 Co/Zn/Cd efflux system component	gene	gene1121	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1125
CH54_1126	CH54_1126	pnuC	pnuC	1228608	1229336	-	nicotinamide mononucleotide transporter PnuC family protein	NMN_trans_PnuC: nicotinamide mononucleotide transporter PnuC family protein~[H] COG3201 Nicotinamide mononucleotide transporter	gene	gene1122	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1126
CH54_1127	CH54_1127	nadA	nadA	1229485	1230546	-	quinolinate synthetase complex%2C A subunit	nadA: quinolinate synthetase complex%2C A subunit~[H] COG0379 Quinolinate synthase	gene	gene1123	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1127
CH54_1128	CH54_1128		CH54_1128	1231677	1231752	-	tRNA-Lys		tRNA	gene1124	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1128
CH54_1129	CH54_1129		CH54_1129	1231930	1232005	-	tRNA-Lys		tRNA	gene1125	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1129
CH54_113	CH54_113		CH54_113	122970	123593	-	outer membrane beta-barrel domain protein		gene	gene112	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_113
CH54_1130	CH54_1130		CH54_1130	1232143	1232218	-	tRNA-Lys		tRNA	gene1126	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1130
CH54_1131	CH54_1131		CH54_1131	1232382	1232457	-	tRNA-Lys		tRNA	gene1127	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1131
CH54_1132	CH54_1132	ygbF	ygbF	1232650	1233459	-	tol-pal system protein YbgF	tol_pal_ybgF: tol-pal system protein YbgF~[S] COG1729 Uncharacterized protein conserved in bacteria	gene	gene1128	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1132
CH54_1133	CH54_1133	pal	pal	1233469	1233975	-	peptidoglycan-associated lipoprotein	pal_lipo: peptidoglycan-associated lipoprotein~[M] COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)proteins	gene	gene1129	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1133
CH54_1134	CH54_1134	tolB	tolB	1234026	1235318	-	Tol-Pal system beta propeller repeat protein TolB	propeller_TolB: Tol-Pal system beta propeller repeat protein TolB~[U] COG0823 Periplasmic component of the Tol biopolymer transport system	gene	gene1130	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1134
CH54_1135	CH54_1135	tolA	tolA	1235438	1236598	-	protein TolA	tolA_full: protein TolA~[M] COG3064 Membrane protein involved in colicin uptake	gene	gene1131	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1135
CH54_1136	CH54_1136	tolR	tolR	1236695	1237123	-	protein TolR	tolR: protein TolR~[U] COG0848 Biopolymer transport protein	gene	gene1132	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1136
CH54_1137	CH54_1137	tolQ	tolQ	1237136	1237822	-	protein TolQ	tolQ: protein TolQ~[U] COG0811 Biopolymer transport proteins	gene	gene1133	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1137
CH54_1138	CH54_1138	ybgC	ybgC	1237822	1238223	-	tol-pal system-associated acyl-CoA thioesterase	thio_ybgC: tol-pal system-associated acyl-CoA thioesterase~[R] COG0824 Predicted thioesterase	gene	gene1134	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1138
CH54_1139	CH54_1139		CH54_1139	1238372	1238671	-	cyd operon protein YbgE	cyd_oper_ybgE: cyd operon protein YbgE~[S] COG3790 Predicted membrane protein	gene	gene1135	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1139
CH54_114	CH54_114	purB	purB	123756	125126	-	adenylosuccinate lyase	purB: adenylosuccinate lyase~[F] COG0015 Adenylosuccinate lyase	gene	gene113	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_114
CH54_1140	CH54_1140		CH54_1140	1238646	1238783	-	cyd operon protein YbgT	cyd_oper_ybgT: cyd operon protein YbgT~[S] COG4890 Predicted outer membrane lipoprotein	gene	gene1136	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1140
CH54_1141	CH54_1141	cydB	cydB	1238796	1239935	-	cytochrome d ubiquinol oxidase%2C subunit II	cydB: cytochrome d ubiquinol oxidase%2C subunit II~[C] COG1294 Cytochrome bd-type quinol oxidase%2C subunit 2	gene	gene1137	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1141
CH54_1142	CH54_1142		CH54_1142	1239950	1241518	-	bacterial Cytochrome Ubiquinol Oxidase family protein	[C] COG1271 Cytochrome bd-type quinol oxidase%2C subunit 1	gene	gene1138	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1142
CH54_1143	CH54_1143		CH54_1143	1242103	1244001	+	hypothetical protein	5'-nucleotidase%2C C-terminal domain protein~[F] COG0737 5'-nucleotidase/2'%2C3'-cyclic phosphodiesterase and related esterases	gene	gene1139	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1143
CH54_1144	CH54_1144	sucD	sucD	1244048	1244926	-	succinate-CoA ligase%2C alpha subunit	sucCoAalpha: succinate-CoA ligase%2C alpha subunit~[C] COG0074 Succinyl-CoA synthetase%2C alpha subunit	gene	gene1140	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1144
CH54_1145	CH54_1145	sucC	sucC	1244926	1246092	-	succinate-CoA ligase%2C beta subunit	sucCoAbeta: succinate-CoA ligase%2C beta subunit~[C] COG0045 Succinyl-CoA synthetase%2C beta subunit	gene	gene1141	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1145
CH54_1146	CH54_1146	sucB	sucB	1246206	1247429	-	dihydrolipoyllysine-residue succinyltransferase%2C E2 component of oxoglutarate dehydrogenase complex	sucB: dihydrolipoyllysine-residue succinyltransferase%2C E2 component of oxoglutarate dehydrogenase complex~[C] COG0508 Pyruvate/2-oxoglutarate dehydrogenase complex%2C dihydrolipoamide acyltransferase (E2) component%2C and related enzymes	gene	gene1142	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1146
CH54_1147	CH54_1147	sucA	sucA	1247458	1250265	-	oxoglutarate dehydrogenase (succinyl-transferring)%2C E1 component	2oxo_dh_E1: oxoglutarate dehydrogenase (succinyl-transferring)%2C E1 component~[C] COG0567 2-oxoglutarate dehydrogenase complex%2C dehydrogenase (E1) component%2C and related enzymes	gene	gene1143	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1147
CH54_1148	CH54_1148		CH54_1148	1250579	1251295	-	succinate dehydrogenase and fumarate reductase iron-sulfur family protein	dhsB: succinate dehydrogenase and fumarate reductase iron-sulfur family protein~[C] COG0479 Succinate dehydrogenase/fumarate reductase%2C Fe-S protein subunit	gene	gene1144	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1148
CH54_1149	CH54_1149	sdhA	sdhA	1251350	1253116	-	succinate dehydrogenase%2C flavoprotein subunit	sdhA_forward: succinate dehydrogenase%2C flavoprotein subunit~[C] COG1053 Succinate dehydrogenase/fumarate reductase%2C flavoprotein subunit	gene	gene1145	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1149
CH54_115	CH54_115		CH54_115	125152	125778	-	hypothetical protein	conserved hypothetical protein~[R] COG2915 Uncharacterized protein involved in purine metabolism	gene	gene114	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_115
CH54_1150	CH54_1150	sdhD	sdhD	1253117	1253464	-	succinate dehydrogenase%2C hydrophobic membrane anchor protein	succ_dehyd_anc: succinate dehydrogenase%2C hydrophobic membrane anchor protein~[C] COG2142 Succinate dehydrogenase%2C hydrophobic anchor subunit	gene	gene1146	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1150
CH54_1151	CH54_1151	sdhC	sdhC	1253458	1253847	-	succinate dehydrogenase%2C cytochrome b556 subunit	succ_dehyd_cytB: succinate dehydrogenase%2C cytochrome b556 subunit~[C] COG2009 Succinate dehydrogenase/fumarate reductase%2C cytochrome b subunit	gene	gene1147	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1151
CH54_1152	CH54_1152	gltA	gltA	1254494	1255774	+	citrate (Si)-synthase	cit_synth_I: citrate (Si)-synthase~[C] COG0372 Citrate synthase	gene	gene1148	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1152
CH54_1153	CH54_1153	pcp	pcp	1255905	1256552	-	pyroglutamyl-peptidase I	pyro_pdase: pyroglutamyl-peptidase I~[O] COG2039 Pyrrolidone-carboxylate peptidase (N-terminal pyroglutamyl peptidase)	gene	gene1149	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1153
CH54_1154	CH54_1154		CH54_1154	1256561	1257580	-	hypothetical protein	conserved hypothetical protein~[S] COG3817 Predicted membrane protein	gene	gene1150	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1154
CH54_1155	CH54_1155		CH54_1155	1257577	1258308	-	hypothetical protein	conserved hypothetical protein~[S] COG3819 Predicted membrane protein	gene	gene1151	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1155
CH54_1156	CH54_1156		CH54_1156	1258412	1259149	-	lamB/YcsF family protein	[R] COG1540 Uncharacterized proteins%2C homologs of lactam utilization protein B	gene	gene1152	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1156
CH54_1157	CH54_1157		CH54_1157	1259146	1260111	-	hypothetical protein	conserved hypothetical protein~[E] COG1984 Allophanate hydrolase subunit 2	gene	gene1153	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1157
CH54_1158	CH54_1158		CH54_1158	1260105	1260722	-	allophanate hydrolase subunit 1 family protein	[E] COG2049 Allophanate hydrolase subunit 1	gene	gene1154	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1158
CH54_1159	CH54_1159		CH54_1159	1261173	1262042	-	NIF3 family protein	[S] COG0327 Uncharacterized conserved protein	gene	gene1155	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1159
CH54_116	CH54_116	trmU	trmU	125819	126940	-	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase	trmU: tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase~[J] COG0482 Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase%2C contains the PP-loop ATPase domain	gene	gene115	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_116
CH54_1160	CH54_1160		CH54_1160	1262169	1263239	-	cAMP phosphodiesterases class-II family protein	[T] COG5212 Low-affinity cAMP phosphodiesterase	gene	gene1156	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1160
CH54_1161	CH54_1161		CH54_1161	1263255	1264700	-	FAD binding domain of DNA photolyase family protein	[L] COG0415 Deoxyribodipyrimidine photolyase	gene	gene1157	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1161
CH54_1162	CH54_1162		CH54_1162	1264704	1265195	-	hypothetical protein	conserved hypothetical protein~[S] COG3272 Uncharacterized conserved protein	gene	gene1158	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1162
CH54_1163	CH54_1163		CH54_1163	1265293	1265499	-	hypothetical protein	conserved hypothetical protein	gene	gene1159	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1163
CH54_1164	CH54_1164	kdpA	kdpA	1266098	1267786	+	K+-transporting ATPase%2C A subunit	kdpA: K+-transporting ATPase%2C A subunit~[P] COG2060 K+-transporting ATPase%2C A chain	gene	gene1160	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1164
CH54_1165	CH54_1165	kdpB	kdpB	1267814	1269880	+	K+-transporting ATPase%2C B subunit	kdpB: K+-transporting ATPase%2C B subunit~[P] COG2216 High-affinity K+ transport system%2C ATPase chain B	gene	gene1161	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1165
CH54_1166	CH54_1166	kdpC	kdpC	1269976	1270614	+	K+-transporting ATPase%2C C subunit	kdpC: K+-transporting ATPase%2C C subunit~[P] COG2156 K+-transporting ATPase%2C c chain	gene	gene1162	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1166
CH54_1167	CH54_1167		CH54_1167	1270624	1273326	+	universal stress family protein	[T] COG2205 Osmosensitive K+ channel histidine kinase	gene	gene1163	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1167
CH54_1168	CH54_1168		CH54_1168	1273323	1274012	+	hypothetical protein	transcriptional regulatory%2C C terminal family protein~[TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain	gene	gene1164	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1168
CH54_1169	CH54_1169		CH54_1169	1274106	1274534	+	eamA-like transporter family protein	[S] COG2510 Predicted membrane protein	gene	gene1165	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1169
CH54_117	CH54_117		CH54_117	127148	127594	-	NUDIX domain protein	[LR] COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes	gene	gene116	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_117
CH54_1170	CH54_1170		CH54_1170	1274810	1276270	+	hemolysin-type calcium-binding repeat family protein	[Q] COG2931 RTX toxins and related Ca2+-binding proteins	gene	gene1166	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1170
CH54_1171	CH54_1171	pgm	pgm	1276356	1278002	-	phosphoglucomutase%2C alpha-D-glucose phosphate-specific	pgm: phosphoglucomutase%2C alpha-D-glucose phosphate-specific~[G] COG0033 Phosphoglucomutase	gene	gene1167	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1171
CH54_1172	CH54_1172		CH54_1172	1278085	1278627	-	seqA family protein	[L] COG3057 Negative regulator of replication initiationR	gene	gene1168	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1172
CH54_1173	CH54_1173		CH54_1173	1279059	1279832	+	PGAP1-like family protein	[R] COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily)	gene	gene1169	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1173
CH54_1174	CH54_1174		CH54_1174	1279937	1280044	+	hypothetical protein		gene	gene1170	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1174
CH54_1175	CH54_1175		CH54_1175	1280215	1280502	+	ribbon-helix-helix%2C copG family protein		gene	gene1171	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1175
CH54_1176	CH54_1176		CH54_1176	1280642	1282300	-	hypothetical protein	conserved hypothetical protein~[NT] COG0840 Methyl-accepting chemotaxis protein	gene	gene1172	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1176
CH54_1177	CH54_1177		CH54_1177	1282648	1283175	+	flavodoxin	flav_long: flavodoxin~[C] COG0716 Flavodoxins	gene	gene1173	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1177
CH54_1178	CH54_1178		CH54_1178	1283658	1284104	+	ferric uptake regulator family protein	[P] COG0735 Fe2+/Zn2+ uptake regulation proteins	gene	gene1174	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1178
CH54_1179	CH54_1179		CH54_1179	1284547	1287222	-	glycosyl hydrolase family 20%2C catalytic domain protein	[G] COG3525 N-acetyl-beta-hexosaminidase	gene	gene1175	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1179
CH54_118	CH54_118		CH54_118	127587	128213	-	pseudouridine synthase family protein	[J] COG1187 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases	gene	gene117	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_118
CH54_1180	CH54_1180		CH54_1180	1287331	1287657	-	ybfN-like lipofamily protein		gene	gene1176	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1180
CH54_1181	CH54_1181		CH54_1181	1287718	1289121	-	outer membrane porin%2C OprD family protein		gene	gene1177	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1181
CH54_1182	CH54_1182	glnS	glnS	1289755	1291422	-	glutamine--tRNA ligase	glnS: glutamine--tRNA ligase~[J] COG0008 Glutamyl- and glutaminyl-tRNA synthetases	gene	gene1178	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1182
CH54_1183	CH54_1183	nagE	nagE	1291763	1293796	-	PTS system%2C N-acetylglucosamine-specific IIBC component	PTS-II-BC-nag: PTS system%2C N-acetylglucosamine-specific IIBC component~[G] COG1263 Phosphotransferase system IIC components%2C glucose/maltose/N-acetylglucosamine-specific	gene	gene1179	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1183
CH54_1184	CH54_1184	nagB	nagB	1294150	1294950	+	glucosamine-6-phosphate deaminase	nagB: glucosamine-6-phosphate deaminase~[G] COG0363 6-phosphogluconolactonase/Glucosamine-6-phosphate isomerase/deaminase	gene	gene1180	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1184
CH54_1185	CH54_1185	nagA	nagA	1294970	1296121	+	N-acetylglucosamine-6-phosphate deacetylase	nagA: N-acetylglucosamine-6-phosphate deacetylase~[G] COG1820 N-acetylglucosamine-6-phosphate deacetylase	gene	gene1181	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1185
CH54_1186	CH54_1186		CH54_1186	1296138	1297358	+	marR family protein	[KG] COG1940 Transcriptional regulator/sugar kinase	gene	gene1182	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1186
CH54_1187	CH54_1187		CH54_1187	1297449	1298201	+	HAD hydrolase%2C IA%2C variant 1 family protein	HAD-SF-IA-v1: HAD hydrolase%2C IA%2C variant 1 family protein~[G] COG0647 Predicted sugar phosphatases of the HAD superfamily	gene	gene1183	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1187
CH54_1188	CH54_1188	asnB	asnB	1298556	1300220	+	asparagine synthase	asn_synth_AEB: asparagine synthase~[E] COG0367 Asparagine synthase (glutamine-hydrolyzing)	gene	gene1184	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1188
CH54_1189	CH54_1189		CH54_1189	1300474	1300550	+	tRNA-Met		tRNA	gene1185	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1189
CH54_119	CH54_119	icd	icd	128344	129597	+	isocitrate dehydrogenase%2C NADP-dependent	prok_nadp_idh: isocitrate dehydrogenase%2C NADP-dependent~[C] COG0538 Isocitrate dehydrogenases	gene	gene118	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_119
CH54_1190	CH54_1190		CH54_1190	1300566	1300650	+	tRNA-Leu		tRNA	gene1186	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1190
CH54_1191	CH54_1191		CH54_1191	1300674	1300748	+	tRNA-Gln		tRNA	gene1187	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1191
CH54_1192	CH54_1192		CH54_1192	1300831	1300905	+	tRNA-Gln		tRNA	gene1188	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1192
CH54_1193	CH54_1193		CH54_1193	1300937	1301013	+	tRNA-Met		tRNA	gene1189	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1193
CH54_1194	CH54_1194		CH54_1194	1301019	1301093	+	tRNA-Gln		tRNA	gene1190	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1194
CH54_1195	CH54_1195		CH54_1195	1301269	1302450	-	ubiquinone biosynthesis hydroxylase%2C UbiH/UbiF/VisC/COQ6 family protein	ubi-OHases: ubiquinone biosynthesis hydroxylase%2C UbiH/UbiF/VisC/COQ6 family protein~[HC] COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases	gene	gene1191	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1195
CH54_1196	CH54_1196	miaB	miaB	1302695	1304119	+	tRNA-i(6)A37 thiotransferase enzyme MiaB	miaB-methiolase: tRNA-i(6)A37 thiotransferase enzyme MiaB~[J] COG0621 2-methylthioadenine synthetase	gene	gene1192	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1196
CH54_1197	CH54_1197		CH54_1197	1304436	1305509	+	phoH-like family protein	[T] COG1702 Phosphate starvation-inducible protein PhoH%2C predicted ATPase	gene	gene1193	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1197
CH54_1198	CH54_1198		CH54_1198	1305506	1305979	+	putative rRNA maturation factor YbeY	[R] COG0319 Predicted metal-dependent hydrolase	gene	gene1194	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1198
CH54_1199	CH54_1199		CH54_1199	1306236	1307114	+	CBS domain protein	[P] COG4535 Putative Mg2+ and Co2+ transporter CorC	gene	gene1195	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1199
CH54_12	CH54_12		CH54_12	12221	13297	-	ompA-like transmembrane domain protein	[M] COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)proteins	gene	gene11	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_12
CH54_120	CH54_120		CH54_120	129891	130751	+	glycosyltransferase like 2 family protein		gene	gene119	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_120
CH54_1200	CH54_1200	lnt	lnt	1307122	1308678	+	apolipoprotein N-acyltransferase	lnt: apolipoprotein N-acyltransferase~[M] COG0815 Apolipoprotein N-acyltransferase	gene	gene1196	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1200
CH54_1201	CH54_1201		CH54_1201	1308691	1309275	+	pyridoxamine 5'-phosphate oxidase%2C FMN-binding family protein	PPOX_FMN_DR2398: pyridoxamine 5'-phosphate oxidase%2C FMN-binding family protein~[R] COG3576 Predicted flavin-nucleotide-binding protein structurally related to pyridoxine 5'-phosphate oxidase	gene	gene1197	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1201
CH54_1202	CH54_1202		CH54_1202	1309883	1310797	+	bacterial extracellular solute-binding s%2C 3 family protein	[ET] COG0834 ABC-type amino acid transport/signal transduction systems%2C periplasmic component/domain	gene	gene1198	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1202
CH54_1203	CH54_1203		CH54_1203	1310980	1311720	+	amino ABC transporter%2C permease%2C 3-TM region%2C His/Glu/Gln/Arg/opine family domain protein	HEQRo_perm_3TM: amino ABC transporter%2C permease%2C 3-TM region%2C His/Glu/Gln/Arg/opine family domain protein~[E] COG0765 ABC-type amino acid transport system%2C permease component	gene	gene1199	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1203
CH54_1204	CH54_1204		CH54_1204	1311720	1312394	+	amino ABC transporter%2C permease%2C 3-TM region%2C His/Glu/Gln/Arg/opine family domain protein	HEQRo_perm_3TM: amino ABC transporter%2C permease%2C 3-TM region%2C His/Glu/Gln/Arg/opine family domain protein~[E] COG0765 ABC-type amino acid transport system%2C permease component	gene	gene1200	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1204
CH54_1205	CH54_1205		CH54_1205	1312394	1313119	+	ABC transporter family protein	[E] COG1126 ABC-type polar amino acid transport system%2C ATPase component	gene	gene1201	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1205
CH54_1206	CH54_1206		CH54_1206	1313249	1314187	+	inosine-uridine preferring nucleoside hydrolase family protein	[F] COG1957 Inosine-uridine nucleoside N-ribohydrolase	gene	gene1202	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1206
CH54_1207	CH54_1207		CH54_1207	1314238	1314720	-	hypothetical protein	conserved hypothetical protein	gene	gene1203	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1207
CH54_1208	CH54_1208	leuS	leuS	1315085	1317667	+	leucine--tRNA ligase	leuS_bact: leucine--tRNA ligase~[J] COG0495 Leucyl-tRNA synthetase	gene	gene1204	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1208
CH54_1209	CH54_1209		CH54_1209	1317682	1318305	+	lipopolysaccharide-assembly family protein	[M] COG2980 Rare lipoprotein B	gene	gene1205	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1209
CH54_121	CH54_121		CH54_121	130885	132123	+	O-Antigen ligase family protein	[M] COG3307 Lipid A core - O-antigen ligase and related enzymes	gene	gene120	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_121
CH54_1210	CH54_1210	holA	holA	1318302	1319336	+	DNA polymerase III%2C delta subunit	holA: DNA polymerase III%2C delta subunit~[L] COG1466 DNA polymerase III%2C delta subunit	gene	gene1206	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1210
CH54_1211	CH54_1211	nadD	nadD	1319326	1319994	+	nicotinate (nicotinamide) nucleotide adenylyltransferase	[H] COG1057 Nicotinic acid mononucleotide adenylyltransferase	gene	gene1207	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1211
CH54_1212	CH54_1212	rsfS	rsfS	1320478	1320795	+	ribosome silencing factor	rsfS_iojap_ybeB: ribosome silencing factor~[S] COG0799 Uncharacterized homolog of plant Iojap protein	gene	gene1208	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1212
CH54_1213	CH54_1213	rlmH	rlmH	1320799	1321269	+	rRNA large subunit m3Psi methyltransferase RlmH	tRNA_RlmH_YbeA: rRNA large subunit m3Psi methyltransferase RlmH~[S] COG1576 Uncharacterized conserved protein	gene	gene1209	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1213
CH54_1214	CH54_1214	mrdA	mrdA	1321327	1323222	+	penicillin-binding protein 2	pbp2_mrdA: penicillin-binding protein 2~[M] COG0768 Cell division protein FtsI/penicillin-binding protein 2	gene	gene1210	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1214
CH54_1215	CH54_1215	mrdB	mrdB	1323259	1324371	+	rod shape-determining protein RodA	rodA_shape: rod shape-determining protein RodA~[D] COG0772 Bacterial cell division membrane protein	gene	gene1211	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1215
CH54_1216	CH54_1216	rlpA	rlpA	1324381	1325466	+	rare lipoA family protein	rlpA: rare lipoA family protein~[M] COG0797 Lipoproteins	gene	gene1212	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1216
CH54_1217	CH54_1217		CH54_1217	1325680	1326891	+	D-alanyl-D-alanine carboxypeptidase family protein	[M] COG1686 D-alanyl-D-alanine carboxypeptidase	gene	gene1213	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1217
CH54_1218	CH54_1218		CH54_1218	1327058	1327321	+	hypothetical protein	conserved hypothetical protein~[S] COG2921 Uncharacterized conserved protein	gene	gene1214	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1218
CH54_1219	CH54_1219	lipB	lipB	1327497	1328180	+	lipoyl(octanoyl) transferase	lipB: lipoyl(octanoyl) transferase~[H] COG0321 Lipoate-protein ligase B	gene	gene1215	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1219
CH54_122	CH54_122		CH54_122	132192	132368	-	hypothetical protein	conserved hypothetical protein	gene	gene121	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_122
CH54_1220	CH54_1220	lipA	lipA	1328384	1329349	+	lipoyl synthase	lipA: lipoyl synthase~[H] COG0320 Lipoate synthase	gene	gene1216	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1220
CH54_1221	CH54_1221	tatA	tatA	1329563	1329778	-	twin arginine-targeting translocase%2C TatA/E family protein	tatAE: twin arginine-targeting translocase%2C TatA/E family protein~[U] COG1826 Sec-independent protein secretion pathway components	gene	gene1217	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1221
CH54_1222	CH54_1222		CH54_1222	1330074	1331033	+	diguanylate cyclase domain protein	GGDEF: diguanylate cyclase domain protein~[T] COG2199 FOG: GGDEF domain	gene	gene1218	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1222
CH54_1223	CH54_1223		CH54_1223	1331081	1331464	+	crcB-like family protein	[D] COG0239 Integral membrane protein possibly involved in chromosome condensation	gene	gene1219	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1223
CH54_1224	CH54_1224		CH54_1224	1331751	1331960	-	'Cold-shock' DNA-binding domain protein	[K] COG1278 Cold shock proteins	gene	gene1220	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1224
CH54_1225	CH54_1225		CH54_1225	1332227	1332706	+	'Cold-shock' DNA-binding domain protein		gene	gene1221	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1225
CH54_1226	CH54_1226		CH54_1226	1332893	1333495	-	bacterial regulatory s%2C luxR family protein	[K] COG2771 DNA-binding HTH domain-containing proteins	gene	gene1222	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1226
CH54_1227	CH54_1227		CH54_1227	1333969	1334823	+	putative membrane protein	[S] COG3274 Uncharacterized protein conserved in bacteria	gene	gene1223	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1227
CH54_1228	CH54_1228		CH54_1228	1334971	1335132	+	TOBE domain protein		gene	gene1224	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1228
CH54_1229	CH54_1229		CH54_1229	1335229	1335423	-	glycogen synthesis family protein		gene	gene1225	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1229
CH54_123	CH54_123		CH54_123	132643	133638	-	bacterial regulatory s%2C lacI family protein	[K] COG1609 Transcriptional regulators	gene	gene123	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_123
CH54_1230	CH54_1230		CH54_1230	1335757	1336044	+	antibiotic biosynthesis monooxygenase family protein	[S] COG1359 Uncharacterized conserved protein	gene	gene1226	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1230
CH54_1231	CH54_1231		CH54_1231	1336062	1337834	-	ABC transporter family protein	[O] COG5265 ABC-type transport system involved in Fe-S cluster assembly%2C permease and ATPase components	gene	gene1227	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1231
CH54_1232	CH54_1232		CH54_1232	1338062	1339258	-	cupin superfamily protein	[S] COG2850 Uncharacterized conserved protein	gene	gene1228	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1232
CH54_1233	CH54_1233		CH54_1233	1339506	1339844	+	phnA family protein	[P] COG2824 Uncharacterized Zn-ribbon-containing protein involved in phosphonate metabolism	gene	gene1229	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1233
CH54_1234	CH54_1234		CH54_1234	1339913	1340353	-	hypothetical protein	conserved hypothetical protein	gene	gene1230	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1234
CH54_1235	CH54_1235		CH54_1235	1340755	1341414	+	transcriptional regulator PadR-like family protein	[K] COG1695 Predicted transcriptional regulators	gene	gene1231	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1235
CH54_1236	CH54_1236		CH54_1236	1341414	1341725	+	hypothetical protein	conserved hypothetical protein	gene	gene1232	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1236
CH54_1237	CH54_1237		CH54_1237	1341818	1343248	-	glycosyl hydrolase 1 family protein	[G] COG2723 Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase	gene	gene1233	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1237
CH54_1238	CH54_1238		CH54_1238	1343264	1344721	-	PTS system%2C glucose-like IIB component domain protein	EIIB_glc: PTS system%2C glucose-like IIB component domain protein~[G] COG1263 Phosphotransferase system IIC components%2C glucose/maltose/N-acetylglucosamine-specific	gene	gene1234	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1238
CH54_1239	CH54_1239		CH54_1239	1345099	1346130	+	helix-turn-helix family protein	[K] COG1609 Transcriptional regulators	gene	gene1235	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1239
CH54_124	CH54_124		CH54_124	132487	132666	+	hypothetical protein		gene	gene122	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_124
CH54_1240	CH54_1240		CH54_1240	1346198	1346776	-	yceI-like domain protein	[S] COG2353 Uncharacterized conserved protein	gene	gene1236	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1240
CH54_1241	CH54_1241		CH54_1241	1346802	1347356	-	prokaryotic cytochrome b561 family protein	[C] COG3038 Cytochrome B561	gene	gene1237	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1241
CH54_1242	CH54_1242		CH54_1242	1347685	1348320	-	hypothetical protein	conserved hypothetical protein~[R] COG3218 ABC-type uncharacterized transport system%2C auxiliary component	gene	gene1238	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1242
CH54_1243	CH54_1243		CH54_1243	1348317	1349258	-	mce related family protein	[Q] COG1463 ABC-type transport system involved in resistance to organic solvents%2C periplasmic component	gene	gene1239	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1243
CH54_1244	CH54_1244		CH54_1244	1349259	1350065	-	ABC transporter family protein	[Q] COG1127 ABC-type transport system involved in resistance to organic solvents%2C ATPase component	gene	gene1240	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1244
CH54_1245	CH54_1245		CH54_1245	1350059	1351204	-	ABC transport permease subunit	[Q] COG0767 ABC-type transport system involved in resistance to organic solvents%2C permease component	gene	gene1241	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1245
CH54_1246	CH54_1246		CH54_1246	1351412	1352929	-	major Facilitator Superfamily protein	[GEPR] COG0477 Permeases of the major facilitator superfamily	gene	gene1242	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1246
CH54_1247	CH54_1247		CH54_1247	1353054	1353644	+	bacterial regulatory s%2C tetR family protein	[K] COG1309 Transcriptional regulator	gene	gene1243	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1247
CH54_1248	CH54_1248		CH54_1248	1353803	1355533	+	amidohydrolase family protein	[R] COG1574 Predicted metal-dependent hydrolase with the TIM-barrel fold	gene	gene1244	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1248
CH54_1249	CH54_1249		CH54_1249	1355776	1357119	+	amino acid permease family protein	[E] COG0531 Amino acid transporters	gene	gene1245	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1249
CH54_125	CH54_125		CH54_125	133768	134028	-	hypothetical protein	conserved hypothetical protein	gene	gene124	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_125
CH54_1250	CH54_1250	mltB	mltB	1357306	1358382	-	lytic murein transglycosylase B	mltB: lytic murein transglycosylase B~[M] COG2951 Membrane-bound lytic murein transglycosylase B	gene	gene1246	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1250
CH54_1251	CH54_1251		CH54_1251	1358693	1359709	+	bacterial extracellular solute-binding family protein	[P] COG1840 ABC-type Fe3+ transport system%2C periplasmic component	gene	gene1247	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1251
CH54_1252	CH54_1252		CH54_1252	1359796	1361382	+	binding--dependent transport system inner membrane component family protein	[P] COG1178 ABC-type Fe3+ transport system%2C permease component	gene	gene1248	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1252
CH54_1253	CH54_1253		CH54_1253	1361379	1362446	+	ABC transporter family protein	[E] COG3842 ABC-type spermidine/putrescine transport systems%2C ATPase components	gene	gene1249	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1253
CH54_1254	CH54_1254		CH54_1254	1362551	1363189	+	homoserine/Threonine efflux family protein	2A76: homoserine/Threonine efflux family protein~[E] COG1280 Putative threonine efflux protein	gene	gene1250	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1254
CH54_1255	CH54_1255		CH54_1255	1363215	1363745	-	hypothetical protein	conserved hypothetical protein~[S] COG4331 Predicted membrane protein	gene	gene1251	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1255
CH54_1256	CH54_1256		CH54_1256	1364275	1366698	+	anaerobic dimethyl sulfoxide reductase%2C A subunit%2C DmsA/YnfE family protein	dmsA_ynfE: anaerobic dimethyl sulfoxide reductase%2C A subunit%2C DmsA/YnfE family protein~[C] COG0243 Anaerobic dehydrogenases%2C typically selenocysteine-containing	gene	gene1252	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1256
CH54_1257	CH54_1257	dmsB	dmsB	1366710	1367327	+	dimethylsulfoxide reductase%2C chain B	DMSO_dmsB: dimethylsulfoxide reductase%2C chain B~[C] COG0437 Fe-S-cluster-containing hydrogenase components 1	gene	gene1253	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1257
CH54_1258	CH54_1258		CH54_1258	1367329	1368105	+	DMSO reductase anchor subunit family protein	[R] COG3302 DMSO reductase anchor subunit	gene	gene1254	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1258
CH54_1259	CH54_1259		CH54_1259	1368197	1368814	+	nitrate reductase delta subunit	[R] COG3381 Uncharacterized component of anaerobic dehydrogenases	gene	gene1255	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1259
CH54_126	CH54_126		CH54_126	134201	135760	-	sensory box protein	[NT] COG0840 Methyl-accepting chemotaxis protein	gene	gene125	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_126
CH54_1260	CH54_1260		CH54_1260	1368827	1369138	+	4Fe-4S binding domain protein	[C] COG1145 Ferredoxin	gene	gene1256	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1260
CH54_1261	CH54_1261		CH54_1261	1369219	1369875	-	hypothetical protein	conserved hypothetical protein~[S] COG4380 Uncharacterized protein conserved in bacteria	gene	gene1257	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1261
CH54_1262	CH54_1262		CH54_1262	1369872	1370228	-	putative lipoprotein	[S] COG4259 Uncharacterized protein conserved in bacteria	gene	gene1258	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1262
CH54_1263	CH54_1263		CH54_1263	1370258	1370929	-	tolB amino-terminal domain protein	[M] COG1462 Uncharacterized protein involved in formation of curli polymers	gene	gene1259	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1263
CH54_1264	CH54_1264		CH54_1264	1371442	1371870	+	hypothetical protein	[S] COG1598 Uncharacterized conserved protein	gene	gene1260	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1264
CH54_1265	CH54_1265		CH54_1265	1372289	1372813	-	prokaryotic cytochrome b561 family protein	[C] COG3038 Cytochrome B561	gene	gene1261	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1265
CH54_1266	CH54_1266		CH54_1266	1372983	1374218	-	aminotransferase class I and II family protein	[E] COG0436 Aspartate/tyrosine/aromatic aminotransferase	gene	gene1262	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1266
CH54_1267	CH54_1267		CH54_1267	1374350	1374922	-	acetyltransferase family protein	[J] COG1670 Acetyltransferases%2C including N-acetylases of ribosomal proteins	gene	gene1263	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1267
CH54_1268	CH54_1268		CH54_1268	1375126	1376373	+	phytanoyl-CoA dioxygenase family protein		gene	gene1264	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1268
CH54_1269	CH54_1269		CH54_1269	1376588	1378288	+	5TMR of 5TMR-LYT family protein	[T] COG3275 Putative regulator of cell autolysis	gene	gene1265	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1269
CH54_127	CH54_127	gap	gap	136698	137708	-	glyceraldehyde-3-phosphate dehydrogenase%2C type I	GAPDH-I: glyceraldehyde-3-phosphate dehydrogenase%2C type I~[G] COG0057 Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase	gene	gene126	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_127
CH54_1270	CH54_1270		CH54_1270	1378292	1379032	+	response regulator	[KT] COG3279 Response regulator of the LytR/AlgR family	gene	gene1266	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1270
CH54_1271	CH54_1271		CH54_1271	1379255	1380496	+	major Facilitator Superfamily protein	[GEPR] COG0477 Permeases of the major facilitator superfamily	gene	gene1267	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1271
CH54_1272	CH54_1272	glk	glk	1380689	1381660	-	glucokinase	glk: glucokinase~[G] COG0837 Glucokinase	gene	gene1268	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1272
CH54_1273	CH54_1273		CH54_1273	1381846	1382322	-	bacterial Transmembrane Pair family protein	[S] COG4125 Predicted membrane protein	gene	gene1269	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1273
CH54_1274	CH54_1274		CH54_1274	1382424	1383299	+	bacterial regulatory helix-turn-helix%2C lysR family protein	[K] COG0583 Transcriptional regulator	gene	gene1270	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1274
CH54_1275	CH54_1275		CH54_1275	1383613	1384602	+	aldo/keto reductase family protein	[C] COG0667 Predicted oxidoreductases (related to aryl-alcohol dehydrogenases)	gene	gene1271	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1275
CH54_1276	CH54_1276		CH54_1276	1384767	1385210	+	hypothetical protein	conserved hypothetical protein	gene	gene1272	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1276
CH54_1277	CH54_1277		CH54_1277	1385266	1386495	-	metal ion transporter%2C metal ion family protein	nramp: metal ion transporter%2C metal ion family protein~[P] COG1914 Mn2+ and Fe2+ transporters of the NRAMP family	gene	gene1273	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1277
CH54_1278	CH54_1278		CH54_1278	1386502	1386675	-	hypothetical protein	conserved hypothetical protein	gene	gene1274	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1278
CH54_1279	CH54_1279		CH54_1279	1386894	1388078	+	nucleoside transporter%2C NupC family protein	nupC: nucleoside transporter%2C NupC family protein~[F] COG1972 Nucleoside permease	gene	gene1275	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1279
CH54_128	CH54_128		CH54_128	137790	138767	-	helix-turn-helix domain protein	[K] COG4977 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain	gene	gene127	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_128
CH54_1280	CH54_1280		CH54_1280	1388606	1388681	-	tRNA-Lys		tRNA	gene1276	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1280
CH54_1281	CH54_1281		CH54_1281	1388708	1388783	-	tRNA-Val		tRNA	gene1277	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1281
CH54_1282	CH54_1282		CH54_1282	1388823	1388898	-	tRNA-Val		tRNA	gene1278	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1282
CH54_1283	CH54_1283		CH54_1283	1388953	1389028	-	tRNA-Val		tRNA	gene1279	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1283
CH54_1284	CH54_1284	gltX	gltX	1389272	1390687	+	glutamate--tRNA ligase	gltX_bact: glutamate--tRNA ligase~[J] COG0008 Glutamyl- and glutaminyl-tRNA synthetases	gene	gene1280	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1284
CH54_1285	CH54_1285		CH54_1285	1390858	1390933	+	tRNA-Ala		tRNA	gene1281	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1285
CH54_1287	CH54_1287		CH54_1287	1391008	1391083	+	tRNA-Ala		tRNA	gene1282	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1287
CH54_1288	CH54_1288		CH54_1288	1391229	1391789	+	hypothetical protein	conserved hypothetical protein~[S] COG3575 Uncharacterized protein conserved in bacteria	gene	gene1283	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1288
CH54_1289	CH54_1289		CH54_1289	1391916	1392251	+	flxA-like family protein		gene	gene1284	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1289
CH54_129	CH54_129		CH54_129	139412	140689	+	O-acetylhomoserine aminocarboxypropyltransferase/cysteine synthase family protein	OAH_OAS_sulfhy: O-acetylhomoserine aminocarboxypropyltransferase/cysteine synthase family protein~[E] COG2873 O-acetylhomoserine sulfhydrylase	gene	gene128	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_129
CH54_1290	CH54_1290		CH54_1290	1392327	1392542	-	hypothetical protein	conserved hypothetical protein~[S] COG3530 Uncharacterized protein conserved in bacteria	gene	gene1285	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1290
CH54_1291	CH54_1291	ligA	ligA	1392575	1394587	-	DNA ligase%2C NAD-dependent	dnlj: DNA ligase%2C NAD-dependent~[L] COG0272 NAD-dependent DNA ligase (contains BRCT domain type II)	gene	gene1286	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1291
CH54_1292	CH54_1292	zipA	zipA	1394663	1395661	-	cell division protein ZipA	septum_zipA: cell division protein ZipA~[D] COG3115 Cell division protein	gene	gene1287	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1292
CH54_1293	CH54_1293		CH54_1293	1395881	1396648	+	etoposide-induced 2.4 family protein	[E] COG2981 Uncharacterized protein involved in cysteine biosynthesis	gene	gene1288	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1293
CH54_1294	CH54_1294	cysK	cysK	1396838	1397806	+	cysteine synthase A	cysK: cysteine synthase A~[E] COG0031 Cysteine synthase	gene	gene1289	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1294
CH54_1295	CH54_1295		CH54_1295	1398255	1398512	+	phosphocarrier%2C HPr family protein	PTS_HPr_: phosphocarrier%2C HPr family protein~[G] COG1925 Phosphotransferase system%2C HPr-related proteins	gene	gene1290	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1295
CH54_1296	CH54_1296	ptsP	ptsP	1398560	1400287	+	phosphoenolpyruvate-protein phosphotransferase	PTS_I_fam: phosphoenolpyruvate-protein phosphotransferase~[G] COG1080 Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria)	gene	gene1291	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1296
CH54_1297	CH54_1297	ptbA	ptbA	1400463	1400972	+	PTS system%2C glucose subfamily%2C IIA component domain protein	PTBA: PTS system%2C glucose subfamily%2C IIA component domain protein~[G] COG2190 Phosphotransferase system IIA components	gene	gene1292	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1297
CH54_1298	CH54_1298		CH54_1298	1401026	1402393	-	HAMP domain protein	[T] COG0642 Signal transduction histidine kinase	gene	gene1293	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1298
CH54_1299	CH54_1299		CH54_1299	1402419	1403102	-	response regulator	[TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain	gene	gene1294	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1299
CH54_13	CH54_13		CH54_13	13655	14161	-	cell division inhibitor SulA family protein	[D] COG5404 SOS-response cell division inhibitor%2C blocks FtsZ ring formation	gene	gene12	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_13
CH54_130	CH54_130		CH54_130	140764	141621	-	3-beta hydroxysteroid dehydrogenase/isomerase family protein	[MG] COG0702 Predicted nucleoside-diphosphate-sugar epimerases	gene	gene129	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_130
CH54_1300	CH54_1300	cysM	cysM	1403515	1404402	-	cysteine synthase B	cysM: cysteine synthase B~[E] COG0031 Cysteine synthase	gene	gene1295	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1300
CH54_1301	CH54_1301	cysA	cysA	1404500	1405591	-	sulfate ABC transporter%2C ATP-binding family protein	3a0106s01: sulfate ABC transporter%2C ATP-binding family protein~[P] COG1118 ABC-type sulfate/molybdate transport systems%2C ATPase component	gene	gene1296	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1301
CH54_1302	CH54_1302	cysW	cysW	1405588	1406457	-	sulfate ABC transporter%2C permease protein CysW	permease_CysW: sulfate ABC transporter%2C permease protein CysW~[P] COG4208 ABC-type sulfate transport system%2C permease component	gene	gene1297	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1302
CH54_1303	CH54_1303	cysT	cysT	1406457	1407293	-	sulfate ABC transporter%2C permease protein CysT	permease_CysT: sulfate ABC transporter%2C permease protein CysT~[O] COG0555 ABC-type sulfate transport system%2C permease component	gene	gene1298	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1303
CH54_1304	CH54_1304		CH54_1304	1407293	1408321	-	sulfate ABC transporter%2C sulfate-binding family protein	3a0106s03: sulfate ABC transporter%2C sulfate-binding family protein~[P] COG4150 ABC-type sulfate transport system%2C periplasmic component	gene	gene1299	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1304
CH54_1305	CH54_1305		CH54_1305	1408569	1410221	-	sugar (and other) transporter family protein	[GEPR] COG0477 Permeases of the major facilitator superfamily	gene	gene1300	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1305
CH54_1306	CH54_1306		CH54_1306	1410449	1411327	-	SIS domain protein	[K] COG1737 Transcriptional regulators	gene	gene1301	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1306
CH54_1307	CH54_1307		CH54_1307	1411505	1411987	-	yhcH/YjgK/YiaL family protein	[G] COG2731 Beta-galactosidase%2C beta subunit	gene	gene1302	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1307
CH54_1308	CH54_1308		CH54_1308	1412021	1412929	-	ROK family protein	[KG] COG1940 Transcriptional regulator/sugar kinase	gene	gene1303	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1308
CH54_1309	CH54_1309		CH54_1309	1413145	1413876	+	N-acetylmannosamine-6-phosphate epimerase family protein	[G] COG3010 Putative N-acetylmannosamine-6-phosphate epimerase	gene	gene1304	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1309
CH54_131	CH54_131		CH54_131	141880	142290	+	hxlR-like helix-turn-helix family protein	[K] COG1733 Predicted transcriptional regulators	gene	gene130	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_131
CH54_1310	CH54_1310		CH54_1310	1413955	1414845	+	dihydrodipicolinate synthetase family protein	[EM] COG0329 Dihydrodipicolinate synthase/N-acetylneuraminate lyase	gene	gene1305	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1310
CH54_1311	CH54_1311		CH54_1311	1414918	1415823	-	Dyp-type peroxidase family protein	dyp_perox_fam: Dyp-type peroxidase family protein~[P] COG2837 Predicted iron-dependent peroxidase	gene	gene1306	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1311
CH54_1312	CH54_1312		CH54_1312	1415998	1416609	-	hypothetical protein	conserved hypothetical protein	gene	gene1307	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1312
CH54_1313	CH54_1313		CH54_1313	1416902	1417315	+	OB-fold nucleic acid binding domain protein	[S] COG3111 Uncharacterized conserved protein	gene	gene1308	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1313
CH54_1314	CH54_1314		CH54_1314	1417625	1418050	-	acetyltransferase domain protein	[R] COG0456 Acetyltransferases	gene	gene1309	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1314
CH54_1315	CH54_1315		CH54_1315	1418286	1419212	+	coproporphyrinogen III oxidase family protein	[H] COG0408 Coproporphyrinogen III oxidase	gene	gene1310	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1315
CH54_1316	CH54_1316		CH54_1316	1419212	1419685	+	hypothetical protein	conserved hypothetical protein~[S] COG1671 Uncharacterized protein conserved in bacteria	gene	gene1311	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1316
CH54_1317	CH54_1317		CH54_1317	1419836	1422115	-	malic enzyme%2C NAD binding domain protein	[C] COG0281 Malic enzyme	gene	gene1312	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1317
CH54_1318	CH54_1318		CH54_1318	1422340	1422915	-	nudix-type nucleoside diphosphatase%2C YffH/AdpP family protein	[LR] COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes	gene	gene1313	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1318
CH54_1319	CH54_1319		CH54_1319	1422944	1423231	-	addiction module toxin%2C RelE/StbE family protein	relE_StbE: addiction module toxin%2C RelE/StbE family protein~[JD] COG2026 Cytotoxic translational repressor of toxin-antitoxin stability system	gene	gene1314	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1319
CH54_132	CH54_132		CH54_132	142380	142664	-	YCII-related domain protein	[S] COG2350 Uncharacterized protein conserved in bacteria	gene	gene131	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_132
CH54_1320	CH54_1320		CH54_1320	1423228	1423479	-	antitoxin Phd-YefM%2C type II toxin-antitoxin system family protein	[D] COG2161 Antitoxin of toxin-antitoxin stability system	gene	gene1315	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1320
CH54_1321	CH54_1321		CH54_1321	1423628	1424227	-	periplasmic nitrate (or nitrite) reductase c-type cytochrome%2C NapC/NirT family protein	napC_nirT: periplasmic nitrate (or nitrite) reductase c-type cytochrome%2C NapC/NirT family protein~[C] COG3005 Nitrate/TMAO reductases%2C membrane-bound tetraheme cytochrome c subunit	gene	gene1316	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1321
CH54_1322	CH54_1322		CH54_1322	1424255	1424722	-	nitrate reductase cytochrome c-type subunit family protein	[C] COG3043 Nitrate reductase cytochrome c-type subunit	gene	gene1317	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1322
CH54_1323	CH54_1323	napA	napA	1424757	1427252	-	periplasmic nitrate reductase%2C large subunit	NAPA: periplasmic nitrate reductase%2C large subunit~[C] COG0243 Anaerobic dehydrogenases%2C typically selenocysteine-containing	gene	gene1318	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1323
CH54_1324	CH54_1324		CH54_1324	1427249	1427515	-	napD family protein	[P] COG3062 Uncharacterized protein involved in formation of periplasmic nitrate reductase	gene	gene1319	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1324
CH54_1325	CH54_1325	napF	napF	1427505	1428008	-	ferredoxin-type protein NapF	napF: ferredoxin-type protein NapF~[C] COG1145 Ferredoxin	gene	gene1320	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1325
CH54_1326	CH54_1326		CH54_1326	1428511	1429140	+	bacterial regulatory s%2C luxR family protein	[TK] COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain	gene	gene1321	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1326
CH54_1327	CH54_1327		CH54_1327	1429304	1429582	-	winged helix-turn helix family protein	[S] COG4519 Uncharacterized protein conserved in bacteria	gene	gene1322	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1327
CH54_1328	CH54_1328		CH54_1328	1429794	1432916	+	RND transporter%2C hydrophobe/amphiphile efflux-1 family protein	2A0602: RND transporter%2C hydrophobe/amphiphile efflux-1 family protein~[V] COG0841 Cation/multidrug efflux pump	gene	gene1323	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1328
CH54_1329	CH54_1329		CH54_1329	1433299	1434369	-	ABC transporter family protein	[E] COG3842 ABC-type spermidine/putrescine transport systems%2C ATPase components	gene	gene1324	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1329
CH54_133	CH54_133		CH54_133	142890	143048	+	hypothetical protein	conserved hypothetical protein	gene	gene132	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_133
CH54_1330	CH54_1330		CH54_1330	1434362	1436131	-	binding--dependent transport system inner membrane component family protein	[P] COG1178 ABC-type Fe3+ transport system%2C permease component	gene	gene1325	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1330
CH54_1331	CH54_1331		CH54_1331	1436221	1437321	-	bacterial extracellular solute-binding family protein	[P] COG1840 ABC-type Fe3+ transport system%2C periplasmic component	gene	gene1326	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1331
CH54_1332	CH54_1332		CH54_1332	1437686	1438159	+	tetratricopeptide repeat family protein	[R] COG0457 FOG: TPR repeat	gene	gene1327	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1332
CH54_1333	CH54_1333		CH54_1333	1438315	1438755	-	hypothetical protein	conserved hypothetical protein	gene	gene1328	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1333
CH54_1334	CH54_1334		CH54_1334	1438755	1440056	-	PAAR motif family protein		gene	gene1329	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1334
CH54_1335	CH54_1335		CH54_1335	1440368	1440796	+	transcriptional regulator%2C Spx/MgsR family protein	arsC_related: transcriptional regulator%2C Spx/MgsR family protein~[P] COG1393 Arsenate reductase and related proteins%2C glutaredoxin family	gene	gene1330	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1335
CH54_1336	CH54_1336	dapE	dapE	1440798	1441925	+	succinyl-diaminopimelate desuccinylase	dapE_proteo: succinyl-diaminopimelate desuccinylase~[E] COG0624 Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases	gene	gene1331	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1336
CH54_1337	CH54_1337		CH54_1337	1441922	1442623	+	D-alanyl-D-alanine carboxypeptidase family protein	[M] COG1876 D-alanyl-D-alanine carboxypeptidase	gene	gene1332	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1337
CH54_1338	CH54_1338		CH54_1338	1442649	1442840	+	hypothetical protein	conserved hypothetical protein	gene	gene1333	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1338
CH54_1339	CH54_1339		CH54_1339	1442866	1443501	-	phospholipase/Carboxylesterase family protein	[R] COG0400 Predicted esterase	gene	gene1334	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1339
CH54_134	CH54_134		CH54_134	143564	143953	-	hypothetical protein	conserved hypothetical protein~[S] COG3755 Uncharacterized protein conserved in bacteria	gene	gene133	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_134
CH54_1340	CH54_1340		CH54_1340	1443643	1445679	-	acetyltransferase family protein	[R] COG1444 Predicted P-loop ATPase fused to an acetyltransferase	gene	gene1335	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1340
CH54_1341	CH54_1341		CH54_1341	1445714	1446166	-	hypothetical protein	conserved hypothetical protein~[S] COG2707 Predicted membrane protein	gene	gene1336	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1341
CH54_1342	CH54_1342		CH54_1342	1446261	1447130	-	neutral zinc metallopeptidase family protein	[R] COG2321 Predicted metalloprotease	gene	gene1337	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1342
CH54_1343	CH54_1343	purC	purC	1447426	1448139	-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	purC: phosphoribosylaminoimidazolesuccinocarboxamide synthase~[F] COG0152 Phosphoribosylaminoimidazolesuccinocarboxamide (SAICAR) synthase	gene	gene1338	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1343
CH54_1344	CH54_1344		CH54_1344	1448212	1449270	-	nlpB/DapX lipofamily protein	[M] COG3317 Uncharacterized lipoprotein	gene	gene1339	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1344
CH54_1345	CH54_1345	dapA	dapA	1449287	1450204	-	4-hydroxy-tetrahydrodipicolinate synthase	dapA: 4-hydroxy-tetrahydrodipicolinate synthase~[EM] COG0329 Dihydrodipicolinate synthase/N-acetylneuraminate lyase	gene	gene1340	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1345
CH54_1346	CH54_1346		CH54_1346	1450306	1450917	+	ACT domain protein	[E] COG2716 Glycine cleavage system regulatory protein	gene	gene1341	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1346
CH54_1347	CH54_1347		CH54_1347	1450920	1451390	+	redoxin family protein	[O] COG1225 Peroxiredoxin	gene	gene1342	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1347
CH54_1348	CH54_1348		CH54_1348	1451598	1452662	-	hypothetical protein	conserved hypothetical protein~[R] COG0628 Predicted permease	gene	gene1343	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1348
CH54_1349	CH54_1349		CH54_1349	1453015	1454544	+	peptidase M48 family protein	[R] COG4783 Putative Zn-dependent protease%2C contains TPR repeats	gene	gene1344	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1349
CH54_135	CH54_135		CH54_135	144032	144343	-	hdeA/HdeB family protein		gene	gene134	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_135
CH54_1350	CH54_1350	arsC	arsC	1454556	1454912	+	arsenate reductase	arsC: arsenate reductase~[P] COG1393 Arsenate reductase and related proteins%2C glutaredoxin family	gene	gene1345	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1350
CH54_1351	CH54_1351	hda	hda	1454974	1455681	-	DnaA regulatory inactivator Hda	dnaA_homol_Hda: DnaA regulatory inactivator Hda~[L] COG0593 ATPase involved in DNA replication initiation	gene	gene1346	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1351
CH54_1352	CH54_1352		CH54_1352	1455806	1457095	-	uracil-xanthine permease family protein	ncs2: uracil-xanthine permease family protein~[F] COG2233 Xanthine/uracil permeases	gene	gene1347	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1352
CH54_1353	CH54_1353	upp	upp	1457189	1457815	-	uracil phosphoribosyltransferase	upp: uracil phosphoribosyltransferase~[F] COG0035 Uracil phosphoribosyltransferase	gene	gene1348	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1353
CH54_1354	CH54_1354	purM	purM	1458040	1459083	+	phosphoribosylformylglycinamidine cyclo-ligase	purM: phosphoribosylformylglycinamidine cyclo-ligase~[F] COG0150 Phosphoribosylaminoimidazole (AIR) synthetase	gene	gene1349	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1354
CH54_1355	CH54_1355	purN	purN	1459247	1459885	+	phosphoribosylglycinamide formyltransferase	purN: phosphoribosylglycinamide formyltransferase~[F] COG0299 Folate-dependent phosphoribosylglycinamide formyltransferase PurN	gene	gene1350	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1355
CH54_1356	CH54_1356		CH54_1356	1460021	1460566	+	acetyltransferase domain protein	[J] COG1670 Acetyltransferases%2C including N-acetylases of ribosomal proteins	gene	gene1351	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1356
CH54_1357	CH54_1357		CH54_1357	1460603	1461805	-	putative zinc-/iron-chelating domain protein		gene	gene1352	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1357
CH54_1358	CH54_1358	pstB	pstB	1461938	1462750	-	phosphate ABC transporter%2C ATP-binding protein	3a0107s01c2: phosphate ABC transporter%2C ATP-binding protein~[P] COG1117 ABC-type phosphate transport system%2C ATPase component	gene	gene1353	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1358
CH54_1359	CH54_1359	pstA	pstA	1462779	1464443	-	phosphate ABC transporter%2C permease protein PstA	3a0107s02c: phosphate ABC transporter%2C permease protein PstA~[P] COG0581 ABC-type phosphate transport system%2C permease component	gene	gene1354	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1359
CH54_136	CH54_136		CH54_136	144819	146222	+	diguanylate cyclase domain protein	GGDEF: diguanylate cyclase domain protein~[T] COG2199 FOG: GGDEF domain	gene	gene135	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_136
CH54_1360	CH54_1360		CH54_1360	1464443	1466662	-	binding--dependent transport system inner membrane component family protein	[R] COG4590 ABC-type uncharacterized transport system%2C permease component	gene	gene1355	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1360
CH54_1361	CH54_1361	ppk1	ppk1	1466891	1468960	+	polyphosphate kinase 1	poly_P_kin: polyphosphate kinase 1~[P] COG0855 Polyphosphate kinase	gene	gene1356	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1361
CH54_1362	CH54_1362		CH54_1362	1468965	1470527	+	ppx/GppA phosphatase family protein	[FP] COG0248 Exopolyphosphatase	gene	gene1357	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1362
CH54_1363	CH54_1363		CH54_1363	1470651	1470845	+	hypothetical protein	conserved hypothetical protein	gene	gene1358	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1363
CH54_1364	CH54_1364	mgtE	mgtE	1470893	1472368	+	magnesium transporter	mgtE: magnesium transporter~[P] COG2239 Mg/Co/Ni transporter MgtE (contains CBS domain)	gene	gene1359	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1364
CH54_1365	CH54_1365		CH54_1365	1472542	1475892	+	diguanylate cyclase domain protein	GGDEF: diguanylate cyclase domain protein~[T] COG2202 FOG: PAS/PAC domain	gene	gene1360	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1365
CH54_1366	CH54_1366		CH54_1366	1475972	1477324	+	hsp70 family protein	[O] COG0443 Molecular chaperone	gene	gene1361	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1366
CH54_1367	CH54_1367		CH54_1367	1477463	1478017	-	hypothetical protein	conserved hypothetical protein	gene	gene1362	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1367
CH54_1368	CH54_1368		CH54_1368	1478334	1479665	+	efflux transporter%2C RND family%2C MFP subunit	RND_mfp: efflux transporter%2C RND family%2C MFP subunit~[M] COG0845 Membrane-fusion protein	gene	gene1363	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1368
CH54_1369	CH54_1369		CH54_1369	1479665	1482823	+	acrB/AcrD/AcrF family protein	[V] COG0841 Cation/multidrug efflux pump	gene	gene1364	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1369
CH54_137	CH54_137		CH54_137	146342	147193	-	RIO1 family protein	[TD] COG1718 Serine/threonine protein kinase involved in cell cycle control	gene	gene136	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_137
CH54_1370	CH54_1370		CH54_1370	1482820	1485894	+	acrB/AcrD/AcrF family protein	[V] COG0841 Cation/multidrug efflux pump	gene	gene1365	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1370
CH54_1371	CH54_1371		CH54_1371	1486080	1487456	+	HAMP domain protein	[T] COG0642 Signal transduction histidine kinase	gene	gene1366	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1371
CH54_1372	CH54_1372		CH54_1372	1487465	1488184	+	response regulator	[TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain	gene	gene1367	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1372
CH54_1373	CH54_1373		CH54_1373	1488263	1488601	+	hypothetical protein	conserved hypothetical protein~[S] COG3422 Uncharacterized conserved protein	gene	gene1368	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1373
CH54_1374	CH54_1374		CH54_1374	1488825	1490237	+	peptidase U32 family protein	[O] COG0826 Collagenase and related proteases	gene	gene1369	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1374
CH54_1375	CH54_1375	yegS	yegS	1490712	1491611	+	lipid kinase YegS	lip_kinase_YegS: lipid kinase YegS~[IR] COG1597 Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase	gene	gene1370	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1375
CH54_1376	CH54_1376	srlA	srlA	1491991	1492539	+	PTS system%2C glucitol/sorbitol-specific%2C IIC component family protein	EII-GUT: PTS system%2C glucitol/sorbitol-specific%2C IIC component family protein~[G] COG3730 Phosphotransferase system sorbitol-specific component IIC	gene	gene1371	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1376
CH54_1377	CH54_1377		CH54_1377	1492575	1493588	+	PTS system%2C glucitol/sorbitol-specific%2C IIBC component family protein	EIIBC-GUT: PTS system%2C glucitol/sorbitol-specific%2C IIBC component family protein~[G] COG3732 Phosphotransferase system sorbitol-specific component IIBC	gene	gene1372	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1377
CH54_1378	CH54_1378		CH54_1378	1493654	1494016	+	PTS system glucitol/sorbitol-specific IIA component family protein	[G] COG3731 Phosphotransferase system sorbitol-specific component IIA	gene	gene1373	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1378
CH54_1379	CH54_1379		CH54_1379	1494113	1494895	+	short chain dehydrogenase family protein	[IQR] COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)	gene	gene1374	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1379
CH54_138	CH54_138		CH54_138	147296	149014	-	ABC transporter family protein	[V] COG1132 ABC-type multidrug transport system%2C ATPase and permease components	gene	gene137	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_138
CH54_1380	CH54_1380		CH54_1380	1495141	1495506	+	glucitol operon activator family protein	[K] COG4578 Glucitol operon activator	gene	gene1375	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1380
CH54_1381	CH54_1381		CH54_1381	1495591	1496361	+	deoR-like helix-turn-helix domain protein	[KG] COG1349 Transcriptional regulators of sugar metabolism	gene	gene1376	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1381
CH54_1382	CH54_1382		CH54_1382	1496354	1497319	+	sugar isomerase%2C KpsF/GutQ family protein	kpsF: sugar isomerase%2C KpsF/GutQ family protein~[M] COG0794 Predicted sugar phosphate isomerase involved in capsule formation	gene	gene1377	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1382
CH54_1383	CH54_1383		CH54_1383	1497386	1497916	-	inhibitor of vertebrate lysozyme family protein		gene	gene1378	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1383
CH54_1384	CH54_1384		CH54_1384	1498158	1499021	+	hypothetical protein		gene	gene1379	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1384
CH54_1385	CH54_1385	thiD	thiD	1499100	1499900	-	hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase	HMP-P_kinase: hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase~[H] COG0351 Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase	gene	gene1380	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1385
CH54_1386	CH54_1386		CH54_1386	1500110	1501393	-	cytochrome c family protein	[C] COG2010 Cytochrome c%2C mono- and diheme variants	gene	gene1381	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1386
CH54_1387	CH54_1387		CH54_1387	1501395	1503014	-	GMC oxidoreductase family protein	[E] COG2303 Choline dehydrogenase and related flavoproteins	gene	gene1382	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1387
CH54_1388	CH54_1388		CH54_1388	1503032	1503541	-	membrane bound FAD containing D-sorbitol dehydrogenase family protein		gene	gene1383	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1388
CH54_1389	CH54_1389		CH54_1389	1503821	1505692	-	hypothetical protein	conserved hypothetical protein	gene	gene1384	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1389
CH54_139	CH54_139		CH54_139	149214	149633	+	acetyltransferase domain protein	[KR] COG0454 Histone acetyltransferase HPA2 and related acetyltransferases	gene	gene138	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_139
CH54_1390	CH54_1390		CH54_1390	1506063	1506581	-	bacteriophage Rz lysis family protein		gene	gene1385	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1390
CH54_1391	CH54_1391		CH54_1391	1506581	1506886	-	D-alanyl-D-alanine carboxypeptidase family protein		gene	gene1386	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1391
CH54_1392	CH54_1392		CH54_1392	1507187	1507567	-	putative membrane protein		gene	gene1387	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1392
CH54_1393	CH54_1393		CH54_1393	1507672	1508784	-	acyltransferase family protein	[I] COG1835 Predicted acyltransferases	gene	gene1388	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1393
CH54_1394	CH54_1394		CH54_1394	1508903	1511089	-	hypothetical protein		gene	gene1389	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1394
CH54_1395	CH54_1395		CH54_1395	1511262	1511531	+	hypothetical protein		gene	gene1390	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1395
CH54_1396	CH54_1396		CH54_1396	1511574	1511879	-	hypothetical protein	conserved hypothetical protein	gene	gene1391	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1396
CH54_1397	CH54_1397		CH54_1397	1511906	1512097	-	putative membrane protein		gene	gene1392	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1397
CH54_1398	CH54_1398		CH54_1398	1512116	1514614	-	hypothetical protein		gene	gene1393	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1398
CH54_1399	CH54_1399		CH54_1399	1514616	1516406	-	hypothetical protein		gene	gene1394	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1399
CH54_14	CH54_14		CH54_14	14391	15026	+	hypothetical protein	tfoX N-terminal domain protein~[K] COG3070 Regulator of competence-specific genes	gene	gene13	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_14
CH54_140	CH54_140		CH54_140	149904	151406	+	transporter%2C basic amino acid/polyamine antiporter family protein	2A0302: transporter%2C basic amino acid/polyamine antiporter family protein~[E] COG0531 Amino acid transporters	gene	gene139	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_140
CH54_1400	CH54_1400		CH54_1400	1516403	1518913	-	hypothetical protein		gene	gene1395	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1400
CH54_1401	CH54_1401		CH54_1401	1518926	1519468	-	hypothetical protein		gene	gene1396	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1401
CH54_1402	CH54_1402		CH54_1402	1519461	1519931	-	hypothetical protein		gene	gene1397	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1402
CH54_1403	CH54_1403		CH54_1403	1519933	1522392	-	hypothetical protein		gene	gene1398	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1403
CH54_1404	CH54_1404		CH54_1404	1522392	1522997	-	hypothetical protein		gene	gene1399	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1404
CH54_1405	CH54_1405		CH54_1405	1522997	1523317	-	hypothetical protein		gene	gene1400	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1405
CH54_1406	CH54_1406		CH54_1406	1523367	1523750	-	hypothetical protein		gene	gene1401	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1406
CH54_1407	CH54_1407		CH54_1407	1523762	1524196	-	hypothetical protein		gene	gene1402	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1407
CH54_1408	CH54_1408		CH54_1408	1524252	1525235	-	hypothetical protein		gene	gene1403	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1408
CH54_1409	CH54_1409		CH54_1409	1525246	1525968	-	hypothetical protein		gene	gene1404	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1409
CH54_141	CH54_141		CH54_141	151589	151816	+	hypothetical protein	conserved hypothetical protein	gene	gene140	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_141
CH54_1410	CH54_1410		CH54_1410	1525965	1526273	-	hypothetical protein		gene	gene1405	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1410
CH54_1411	CH54_1411		CH54_1411	1526270	1527931	-	bacteriophage head to tail connecting family protein		gene	gene1406	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1411
CH54_1412	CH54_1412		CH54_1412	1527943	1528149	-	hypothetical protein	conserved hypothetical protein	gene	gene1407	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1412
CH54_1413	CH54_1413		CH54_1413	1528333	1528424	+	tRNA-Arg		tRNA	gene1408	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1413
CH54_1414	CH54_1414		CH54_1414	1528629	1529378	+	hypothetical protein		gene	gene1409	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1414
CH54_1415	CH54_1415		CH54_1415	1529437	1530909	-	helicase family protein		gene	gene1410	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1415
CH54_1416	CH54_1416		CH54_1416	1530906	1531463	-	terminase small subunit	[L] COG3728 Phage terminase%2C small subunit	gene	gene1411	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1416
CH54_1417	CH54_1417		CH54_1417	1531542	1532048	-	hypothetical protein		gene	gene1412	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1417
CH54_1418	CH54_1418		CH54_1418	1532197	1532841	-	hypothetical protein		gene	gene1413	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1418
CH54_1419	CH54_1419		CH54_1419	1532841	1533479	-	hypothetical protein		gene	gene1414	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1419
CH54_142	CH54_142		CH54_142	151842	152006	+	putative membrane protein		gene	gene141	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_142
CH54_1420	CH54_1420		CH54_1420	1533541	1533750	-	phage/conjugal plasmid C-4 type zinc finger%2C TraR family protein	C4_traR_proteo: phage/conjugal plasmid C-4 type zinc finger%2C TraR family protein~[T] COG1734 DnaK suppressor protein	gene	gene1415	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1420
CH54_1421	CH54_1421		CH54_1421	1533743	1534219	-	hypothetical protein		gene	gene1416	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1421
CH54_1422	CH54_1422		CH54_1422	1534216	1534428	-	hypothetical protein		gene	gene1417	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1422
CH54_1423	CH54_1423		CH54_1423	1535066	1536313	-	HNH endonuclease family protein	[R] COG5529 Pyocin large subunit	gene	gene1419	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1423
CH54_1424	CH54_1424		CH54_1424	1534591	1535097	+	hypothetical protein		gene	gene1418	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1424
CH54_1425	CH54_1425		CH54_1425	1536313	1536570	-	putative adenylosuccinate synthase		gene	gene1420	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1425
CH54_1426	CH54_1426		CH54_1426	1536567	1536770	-	hypothetical protein		gene	gene1421	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1426
CH54_1427	CH54_1427		CH54_1427	1536920	1537147	-	hypothetical protein		gene	gene1422	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1427
CH54_1428	CH54_1428		CH54_1428	1537292	1537900	+	helix-turn-helix family protein	[KT] COG1974 SOS-response transcriptional repressors (RecA-mediated autopeptidases)	gene	gene1423	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1428
CH54_1429	CH54_1429		CH54_1429	1537900	1538079	+	putative membrane protein		gene	gene1424	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1429
CH54_143	CH54_143		CH54_143	152065	152451	-	helix-turn-helix domain protein	[K] COG2207 AraC-type DNA-binding domain-containing proteins	gene	gene142	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_143
CH54_1430	CH54_1430		CH54_1430	1538384	1538527	+	hypothetical protein		gene	gene1425	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1430
CH54_1431	CH54_1431		CH54_1431	1538531	1540276	+	hypothetical protein	conserved hypothetical protein	gene	gene1426	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1431
CH54_1432	CH54_1432		CH54_1432	1540289	1541449	+	recT family protein		gene	gene1427	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1432
CH54_1433	CH54_1433		CH54_1433	1541510	1541785	+	prophage CP4-57 regulatory family protein	[K] COG3311 Predicted transcriptional regulator	gene	gene1428	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1433
CH54_1434	CH54_1434	a78	a78	1541785	1542078	+	gp78 domain protein		gene	gene1429	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1434
CH54_1435	CH54_1435		CH54_1435	1542081	1542407	+	hypothetical protein		gene	gene1430	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1435
CH54_1436	CH54_1436		CH54_1436	1542404	1542607	+	hypothetical protein		gene	gene1431	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1436
CH54_1437	CH54_1437		CH54_1437	1542600	1543235	+	MT-A70 family protein	[TK] COG4725 Transcriptional activator%2C adenine-specific DNA methyltransferase	gene	gene1432	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1437
CH54_1438	CH54_1438		CH54_1438	1543515	1543913	+	hypothetical protein		gene	gene1433	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1438
CH54_1439	CH54_1439		CH54_1439	1543917	1545119	-	hypothetical protein	phage integrase%2C N-terminal SAM-like domain protein~[L] COG0582 Integrase	gene	gene1434	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1439
CH54_144	CH54_144		CH54_144	152675	152788	+	putative membrane protein		gene	gene143	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_144
CH54_1440	CH54_1440	guaA	guaA	1545352	1546929	-	GMP synthase	guaA_Nterm: GMP synthase (glutamine-hydrolyzing)%2C N-terminal domain~[F] COG0519 GMP synthase%2C PP-ATPase domain/subunit	gene	gene1435	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1440
CH54_1441	CH54_1441	guaB	guaB	1547102	1548565	-	inosine-5'-monophosphate dehydrogenase	IMP_dehydrog: inosine-5'-monophosphate dehydrogenase~[F] COG0516 IMP dehydrogenase/GMP reductase	gene	gene1436	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1441
CH54_1442	CH54_1442	xseA	xseA	1548735	1550111	+	exodeoxyribonuclease VII%2C large subunit	xseA: exodeoxyribonuclease VII%2C large subunit~[L] COG1570 Exonuclease VII%2C large subunit	gene	gene1437	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1442
CH54_1443	CH54_1443		CH54_1443	1550282	1550506	-	zinc-ribbons family protein		gene	gene1438	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1443
CH54_1444	CH54_1444		CH54_1444	1550536	1551492	-	membrane transport family protein	[R] COG0679 Predicted permeases	gene	gene1439	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1444
CH54_1445	CH54_1445	engA	engA	1551601	1553085	-	ribosome-associated GTPase EngA	GTPase_EngA: ribosome-associated GTPase EngA~[R] COG1160 Predicted GTPases	gene	gene1440	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1445
CH54_1446	CH54_1446	yfgL	yfgL	1553284	1554465	-	outer membrane assembly lipoprotein YfgL	assembly_YfgL: outer membrane assembly lipoprotein YfgL~[S] COG1520 FOG: WD40-like repeat	gene	gene1441	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1446
CH54_1447	CH54_1447		CH54_1447	1554477	1555097	-	TPR repeat family protein	[S] COG2976 Uncharacterized protein conserved in bacteria	gene	gene1442	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1447
CH54_1448	CH54_1448	hisS	hisS	1555111	1556385	-	histidine--tRNA ligase	hisS: histidine--tRNA ligase~[J] COG0124 Histidyl-tRNA synthetase	gene	gene1443	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1448
CH54_1449	CH54_1449	ispG	ispG	1556727	1557851	-	4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase	ispG_gcpE: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase~[I] COG0821 Enzyme involved in the deoxyxylulose pathway of isoprenoid biosynthesis	gene	gene1444	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1449
CH54_145	CH54_145		CH54_145	153062	153301	+	hypothetical protein	conserved hypothetical protein	gene	gene144	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_145
CH54_1450	CH54_1450		CH54_1450	1557987	1559003	-	helix-turn-helix family protein	[S] COG1426 Uncharacterized protein conserved in bacteria	gene	gene1445	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1450
CH54_1451	CH54_1451	pilF	pilF	1558993	1559745	-	type IV pilus biogenesis/stability protein PilW	type_IV_pilW: type IV pilus biogenesis/stability protein PilW~[NU] COG3063 Tfp pilus assembly protein PilF	gene	gene1446	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1451
CH54_1452	CH54_1452	rlmN	rlmN	1559945	1561141	-	23S rRNA (adenine(2503)-C(2))-methyltransferase	rRNA_mod_RlmN: 23S rRNA (adenine(2503)-C(2))-methyltransferase~[R] COG0820 Predicted Fe-S-cluster redox enzyme	gene	gene1447	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1452
CH54_1453	CH54_1453		CH54_1453	1561381	1561809	-	nucleoside diphosphate kinase family protein	[F] COG0105 Nucleoside diphosphate kinase	gene	gene1448	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1453
CH54_1454	CH54_1454		CH54_1454	1562115	1564631	-	beta/Gamma crystallin family protein		gene	gene1449	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1454
CH54_1455	CH54_1455	pbpC	pbpC	1564863	1567199	-	penicillin-binding protein 1C	PBP_1c: penicillin-binding protein 1C~[M] COG4953 Membrane carboxypeptidase/penicillin-binding protein PbpC	gene	gene1450	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1455
CH54_1456	CH54_1456		CH54_1456	1567251	1572287	-	alpha-2-macroglobulin family protein	[R] COG2373 Large extracellular alpha-helical protein	gene	gene1451	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1456
CH54_1457	CH54_1457		CH54_1457	1572721	1577151	+	outer membrane autotransporter barrel domain protein	autotrans_barl: outer membrane autotransporter barrel domain protein~[MU] COG3468 Type V secretory pathway%2C adhesin AidA	gene	gene1452	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1457
CH54_1458	CH54_1458		CH54_1458	1577229	1578119	-	hypothetical protein	sseB C-terminal domain protein	gene	gene1453	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1458
CH54_1459	CH54_1459		CH54_1459	1578203	1579498	-	peptidase family protein	[E] COG0260 Leucyl aminopeptidase	gene	gene1454	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1459
CH54_146	CH54_146		CH54_146	153378	153611	-	yobH-like family protein		gene	gene145	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_146
CH54_1460	CH54_1460	iscX	iscX	1579671	1579871	-	FeS assembly protein IscX	iscX_yfhJ: FeS assembly protein IscX~[S] COG2975 Uncharacterized protein conserved in bacteria	gene	gene1455	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1460
CH54_1461	CH54_1461	fdx	fdx	1580016	1580351	-	ferredoxin%2C 2Fe-2S type%2C ISC system	fdx_isc: ferredoxin%2C 2Fe-2S type%2C ISC system~[C] COG0633 Ferredoxin	gene	gene1456	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1461
CH54_1462	CH54_1462	hscA	hscA	1580354	1582204	-	Fe-S protein assembly chaperone HscA	hscA: Fe-S protein assembly chaperone HscA~[O] COG0443 Molecular chaperone	gene	gene1457	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1462
CH54_1463	CH54_1463	hscB	hscB	1582407	1582931	-	Fe-S protein assembly co-chaperone HscB	hscB: Fe-S protein assembly co-chaperone HscB~[O] COG1076 DnaJ-domain-containing proteins 1	gene	gene1458	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1463
CH54_1464	CH54_1464		CH54_1464	1582946	1583095	-	hypothetical protein		gene	gene1459	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1464
CH54_1465	CH54_1465	iscA	iscA	1583127	1583450	-	iron-sulfur cluster assembly protein IscA	iscA: iron-sulfur cluster assembly protein IscA~[S] COG0316 Uncharacterized conserved protein	gene	gene1460	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1465
CH54_1466	CH54_1466	iscU	iscU	1583576	1583962	-	FeS cluster assembly scaffold IscU	iscU: FeS cluster assembly scaffold IscU~[C] COG0822 NifU homolog involved in Fe-S cluster formation	gene	gene1461	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1466
CH54_1467	CH54_1467	iscS	iscS	1583993	1585222	-	cysteine desulfurase IscS	iscS: cysteine desulfurase IscS~[E] COG1104 Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes	gene	gene1462	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1467
CH54_1468	CH54_1468	iscR	iscR	1585276	1585833	-	iron-sulfur cluster assembly transcription factor IscR	iscR: iron-sulfur cluster assembly transcription factor IscR~[K] COG1959 Predicted transcriptional regulator	gene	gene1463	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1468
CH54_1469	CH54_1469		CH54_1469	1585927	1586700	-	RNA methyltransferase%2C TrmH%2C group 1 family protein	rRNA_methyl_1: RNA methyltransferase%2C TrmH%2C group 1 family protein~[J] COG0565 rRNA methylase	gene	gene1464	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1469
CH54_147	CH54_147		CH54_147	154152	154427	+	yebO-like family protein		gene	gene146	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_147
CH54_1470	CH54_1470		CH54_1470	1586819	1587625	+	inositol monophosphatase family protein	[G] COG0483 Archaeal fructose-1%2C6-bisphosphatase and related enzymes of inositol monophosphatase family	gene	gene1465	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1470
CH54_1471	CH54_1471		CH54_1471	1587698	1588714	-	high-affinity nickel-transport family protein	[R] COG2215 ABC-type uncharacterized transport system%2C permease component	gene	gene1466	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1471
CH54_1472	CH54_1472		CH54_1472	1588705	1589379	-	hypothetical protein	conserved hypothetical protein~[R] COG3683 ABC-type uncharacterized transport system%2C periplasmic component	gene	gene1467	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1472
CH54_1473	CH54_1473		CH54_1473	1590802	1591959	-	lacY proton/sugar symporter family protein	[GEPR] COG0477 Permeases of the major facilitator superfamily	gene	gene1469	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1473
CH54_1474	CH54_1474		CH54_1474	1589522	1590805	+	PRD domain protein	[K] COG3711 Transcriptional antiterminator	gene	gene1468	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1474
CH54_1475	CH54_1475		CH54_1475	1592126	1593379	-	beta-eliminating lyase family protein	[E] COG0112 Glycine/serine hydroxymethyltransferase	gene	gene1470	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1475
CH54_1476	CH54_1476		CH54_1476	1593766	1594956	+	globin family protein	[C] COG1018 Flavodoxin reductases (ferredoxin-NADPH reductases) family 1	gene	gene1471	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1476
CH54_1477	CH54_1477		CH54_1477	1595265	1596119	+	bacterial regulatory s%2C gntR family protein		gene	gene1472	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1477
CH54_1478	CH54_1478		CH54_1478	1596167	1596547	+	PRD domain protein		gene	gene1473	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1478
CH54_1479	CH54_1479		CH54_1479	1596861	1597199	-	nitrogen regulatory P-II family protein	[E] COG0347 Nitrogen regulatory protein PII	gene	gene1474	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1479
CH54_148	CH54_148		CH54_148	154634	154942	+	hypothetical protein	conserved hypothetical protein	gene	gene147	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_148
CH54_1480	CH54_1480	nadE	nadE	1597214	1598836	-	NAD+ synthetase	nadE: NAD+ synthetase~[H] COG0171 NAD synthase	gene	gene1475	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1480
CH54_1481	CH54_1481		CH54_1481	1598882	1600219	-	AAA domain family protein	[T] COG2204 Response regulator containing CheY-like receiver%2C AAA-type ATPase%2C and DNA-binding domains	gene	gene1476	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1481
CH54_1482	CH54_1482		CH54_1482	1600182	1601252	-	yfhG lipofamily protein		gene	gene1477	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1482
CH54_1483	CH54_1483		CH54_1483	1601256	1602692	-	HAMP domain protein	[T] COG0642 Signal transduction histidine kinase	gene	gene1478	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1483
CH54_1484	CH54_1484	purL	purL	1604339	1608229	-	phosphoribosylformylglycinamidine synthase	FGAM_synt: phosphoribosylformylglycinamidine synthase~[F] COG0046 Phosphoribosylformylglycinamidine (FGAM) synthase%2C synthetase domain	gene	gene1479	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1484
CH54_1485	CH54_1485		CH54_1485	1608544	1610004	+	bacterial extracellular solute-binding s%2C 3 family protein	[M] COG4623 Predicted soluble lytic transglycosylase fused to an ABC-type amino acid-binding protein	gene	gene1480	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1485
CH54_1486	CH54_1486		CH54_1486	1610160	1610759	-	cytidine and deoxycytidylate deaminase zinc-binding region family protein	[FJ] COG0590 Cytosine/adenosine deaminases	gene	gene1481	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1486
CH54_1487	CH54_1487		CH54_1487	1610859	1611908	+	putative membrane protein		gene	gene1482	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1487
CH54_1488	CH54_1488		CH54_1488	1611953	1612633	-	haloacid dehalogenase-like hydrolase family protein	[E] COG0560 Phosphoserine phosphatase	gene	gene1483	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1488
CH54_1489	CH54_1489	murQ	murQ	1612715	1613602	-	N-acetylmuramic acid 6-phosphate etherase	[R] COG2103 Predicted sugar phosphate isomerase	gene	gene1484	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1489
CH54_149	CH54_149		CH54_149	155045	155293	+	hypothetical protein	conserved hypothetical protein	gene	gene148	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_149
CH54_1490	CH54_1490		CH54_1490	1614355	1615071	+	bacterial regulatory s%2C luxR family protein	[K] COG2771 DNA-binding HTH domain-containing proteins	gene	gene1485	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1490
CH54_1491	CH54_1491		CH54_1491	1615184	1615330	+	hypothetical protein		gene	gene1486	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1491
CH54_1492	CH54_1492		CH54_1492	1615323	1616165	+	SIS domain protein	[K] COG1737 Transcriptional regulators	gene	gene1487	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1492
CH54_1493	CH54_1493		CH54_1493	1616227	1616487	+	4Fe-4S dicluster domain protein	[C] COG1145 Ferredoxin	gene	gene1488	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1493
CH54_1494	CH54_1494		CH54_1494	1616565	1617908	-	transporter%2C gluconate:H+ symporter family protein	gntP: transporter%2C gluconate:H+ symporter family protein~[GE] COG2610 H+/gluconate symporter and related permeases	gene	gene1489	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1494
CH54_1495	CH54_1495	acpS	acpS	1618339	1618719	-	holo-[acyl-carrier-protein] synthase	acpS: holo-[acyl-carrier-protein] synthase~[I] COG0736 Phosphopantetheinyl transferase (holo-ACP synthase)	gene	gene1490	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1495
CH54_1496	CH54_1496	pdxJ	pdxJ	1618719	1619450	-	pyridoxine 5'-phosphate synthase	pdxJ: pyridoxine 5'-phosphate synthase~[H] COG0854 Pyridoxal phosphate biosynthesis protein	gene	gene1491	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1496
CH54_1497	CH54_1497	recO	recO	1619617	1620342	-	DNA repair protein RecO	reco: DNA repair protein RecO~[L] COG1381 Recombinational DNA repair protein (RecF pathway)	gene	gene1492	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1497
CH54_1498	CH54_1498	era	era	1620351	1621262	-	GTP-binding protein Era	era: GTP-binding protein Era~[R] COG1159 GTPase	gene	gene1493	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1498
CH54_1499	CH54_1499	rnc	rnc	1621259	1621939	-	ribonuclease III	RNaseIII: ribonuclease III~[K] COG0571 dsRNA-specific ribonuclease	gene	gene1494	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1499
CH54_15	CH54_15		CH54_15	15063	17198	-	integral membrane%2C YccS/YhfK family protein	YCCS_YHJK: integral membrane%2C YccS/YhfK family protein~[S] COG1289 Predicted membrane protein	gene	gene14	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_15
CH54_150	CH54_150		CH54_150	155485	156870	+	amino acid permease family protein	[E] COG1113 Gamma-aminobutyrate permease and related permeases	gene	gene149	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_150
CH54_1500	CH54_1500	lepB	lepB	1622177	1623175	-	signal peptidase I	sigpep_I_bact: signal peptidase I~[U] COG0681 Signal peptidase I	gene	gene1495	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1500
CH54_1501	CH54_1501	lepA	lepA	1623185	1624984	-	elongation factor 4	lepA: elongation factor 4~[M] COG0481 Membrane GTPase LepA	gene	gene1496	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1501
CH54_1502	CH54_1502		CH54_1502	1625350	1626186	+	hypothetical protein		gene	gene1497	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1502
CH54_1503	CH54_1503		CH54_1503	1626201	1626662	-	positive regulator of sigma(E)%2C RseC/MucC family protein	[T] COG3086 Positive regulator of sigma E activity	gene	gene1498	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1503
CH54_1504	CH54_1504		CH54_1504	1626659	1627615	-	mucB/RseB family protein	[T] COG3026 Negative regulator of sigma E activity	gene	gene1499	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1504
CH54_1505	CH54_1505		CH54_1505	1627615	1628271	-	hypothetical protein	anti sigma-E RseA%2C N-terminal domain protein~[T] COG3073 Negative regulator of sigma E activity	gene	gene1500	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1505
CH54_1506	CH54_1506	rpoE	rpoE	1628295	1628870	-	RNA polymerase sigma factor RpoE	rpoE_Sigma70: RNA polymerase sigma factor RpoE~[K] COG1595 DNA-directed RNA polymerase specialized sigma subunit%2C sigma24 homolog	gene	gene1501	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1506
CH54_1507	CH54_1507	nadB	nadB	1629059	1630696	+	L-aspartate oxidase	nadB: L-aspartate oxidase~[H] COG0029 Aspartate oxidase	gene	gene1502	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1507
CH54_1508	CH54_1508		CH54_1508	1630776	1631435	-	methyltransferase small domain protein	[R] COG4123 Predicted O-methyltransferase	gene	gene1503	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1508
CH54_1509	CH54_1509		CH54_1509	1631655	1632974	+	DEAD/DEAH box helicase family protein	[LKJ] COG0513 Superfamily II DNA and RNA helicases	gene	gene1504	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1509
CH54_151	CH54_151		CH54_151	157120	157734	-	antimicrobial peptide resistance and lipid A acylation PagP family protein		gene	gene150	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_151
CH54_1510	CH54_1510	grcA	grcA	1633511	1633894	-	autonomous glycyl radical cofactor GrcA	spare_glycyl: autonomous glycyl radical cofactor GrcA~[R] COG3445 Acid-induced glycyl radical enzyme	gene	gene1505	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1510
CH54_1511	CH54_1511	ung	ung	1634247	1634933	+	uracil-DNA glycosylase	ung: uracil-DNA glycosylase~[L] COG0692 Uracil DNA glycosylase	gene	gene1506	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1511
CH54_1512	CH54_1512		CH54_1512	1635002	1635580	-	grpE family protein	[O] COG0576 Molecular chaperone GrpE (heat shock protein)	gene	gene1507	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1512
CH54_1513	CH54_1513		CH54_1513	1635704	1636585	+	ATP-NAD kinase family protein	[G] COG0061 Predicted sugar kinase	gene	gene1508	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1513
CH54_1514	CH54_1514	recN	recN	1636672	1638333	+	DNA repair protein RecN	recN: DNA repair protein RecN~[L] COG0497 ATPase involved in DNA repair	gene	gene1509	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1514
CH54_1515	CH54_1515		CH54_1515	1638447	1638788	+	smpA / OmlA family protein	[J] COG2913 Small protein A (tmRNA-binding)	gene	gene1510	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1515
CH54_1516	CH54_1516		CH54_1516	1638942	1639226	-	rnfH Ubiquitin family protein	[S] COG2914 Uncharacterized protein conserved in bacteria	gene	gene1511	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1516
CH54_1517	CH54_1517		CH54_1517	1639219	1639653	-	polyketide cyclase / dehydrase and lipid transport family protein	[I] COG2867 Oligoketide cyclase/lipid transport protein	gene	gene1512	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1517
CH54_1518	CH54_1518	smpB	smpB	1639802	1640296	+	SsrA-binding protein	smpB: SsrA-binding protein~[O] COG0691 tmRNA-binding protein	gene	gene1513	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1518
CH54_1519	CH54_1519		CH54_1519	1640917	1642158	+	phage integrase family protein	[L] COG0582 Integrase	gene	gene1514	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1519
CH54_152	CH54_152		CH54_152	158879	159088	+	'Cold-shock' DNA-binding domain protein	[K] COG1278 Cold shock proteins	gene	gene151	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_152
CH54_1520	CH54_1520		CH54_1520	1642434	1642937	+	FR47-like family protein		gene	gene1515	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1520
CH54_1521	CH54_1521		CH54_1521	1643165	1644028	-	RES domain protein		gene	gene1516	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1521
CH54_1522	CH54_1522		CH54_1522	1643982	1646579	-	type III restriction enzyme%2C res subunit		gene	gene1517	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1522
CH54_1523	CH54_1523		CH54_1523	1646583	1648688	-	DNA methylase family protein	[L] COG2189 Adenine specific DNA methylase Mod	gene	gene1518	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1523
CH54_1524	CH54_1524		CH54_1524	1649118	1651109	-	hypothetical protein	uvrD/REP helicase N-terminal domain protein~[L] COG0210 Superfamily I DNA and RNA helicases	gene	gene1519	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1524
CH54_1525	CH54_1525		CH54_1525	1651064	1653373	-	AAA domain protein	[L] COG3593 Predicted ATP-dependent endonuclease of the OLD family	gene	gene1520	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1525
CH54_1526	CH54_1526		CH54_1526	1653798	1654520	-	hypothetical protein		gene	gene1521	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1526
CH54_1527	CH54_1527		CH54_1527	1654693	1654935	+	prophage CP4-57 regulatory family protein	[K] COG3311 Predicted transcriptional regulator	gene	gene1522	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1527
CH54_1528	CH54_1528		CH54_1528	1655059	1656615	+	hypothetical protein	conserved hypothetical protein	gene	gene1523	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1528
CH54_1529	CH54_1529		CH54_1529	1657334	1657951	-	hypothetical protein	conserved hypothetical protein	gene	gene1524	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1529
CH54_153	CH54_153		CH54_153	159165	159884	-	multi-copper polyphenol oxidoreductase laccase family protein	[S] COG1496 Uncharacterized conserved protein	gene	gene152	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_153
CH54_1530	CH54_1530		CH54_1530	1658684	1659151	+	hypothetical protein		gene	gene1525	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1530
CH54_1531	CH54_1531		CH54_1531	1659172	1659375	+	hypothetical protein		gene	gene1526	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1531
CH54_1532	CH54_1532		CH54_1532	1659421	1660203	+	hypothetical protein		gene	gene1527	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1532
CH54_1533	CH54_1533		CH54_1533	1660239	1660571	+	hypothetical protein		gene	gene1528	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1533
CH54_1534	CH54_1534		CH54_1534	1660645	1661466	+	hypothetical protein	conserved hypothetical protein	gene	gene1529	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1534
CH54_1535	CH54_1535		CH54_1535	1661559	1662008	+	DNA repair RadC family protein	radc: DNA repair RadC family protein~[L] COG2003 DNA repair proteins	gene	gene1530	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1535
CH54_1536	CH54_1536		CH54_1536	1662021	1662314	+	hypothetical protein	conserved hypothetical protein	gene	gene1531	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1536
CH54_1537	CH54_1537		CH54_1537	1663179	1663940	-	ydjC-like family protein	[S] COG3394 Uncharacterized protein conserved in bacteria	gene	gene1532	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1537
CH54_1538	CH54_1538		CH54_1538	1663989	1664819	-	helix-turn-helix domain protein	[K] COG2207 AraC-type DNA-binding domain-containing proteins	gene	gene1533	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1538
CH54_1539	CH54_1539		CH54_1539	1664872	1665219	-	PTS system%2C Lactose/Cellobiose specific IIA subunit	[G] COG1447 Phosphotransferase system cellobiose-specific component IIA	gene	gene1534	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1539
CH54_154	CH54_154		CH54_154	160084	161793	+	penicillin binding transpeptidase domain protein	[M] COG0768 Cell division protein FtsI/penicillin-binding protein 2	gene	gene153	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_154
CH54_1540	CH54_1540		CH54_1540	1665248	1666633	-	glycosyl hydrolase 1 family protein	[G] COG2723 Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase	gene	gene1535	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1540
CH54_1541	CH54_1541	celB	celB	1666672	1668033	-	PTS system%2C cellobiose-specific IIC component	cello_pts_IIC: PTS system%2C cellobiose-specific IIC component~[G] COG1455 Phosphotransferase system cellobiose-specific component IIC	gene	gene1536	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1541
CH54_1542	CH54_1542		CH54_1542	1668044	1668361	-	PTS system%2C lactose/cellobiose family IIB component domain protein	pts-lac: PTS system%2C lactose/cellobiose family IIB component domain protein~[G] COG1440 Phosphotransferase system cellobiose-specific component IIB	gene	gene1537	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1542
CH54_1543	CH54_1543		CH54_1543	1668940	1670103	+	NHL repeat family protein	[G] COG2133 Glucose/sorbosone dehydrogenases	gene	gene1538	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1543
CH54_1544	CH54_1544		CH54_1544	1670187	1671221	-	aldo/keto reductase family protein	[C] COG0667 Predicted oxidoreductases (related to aryl-alcohol dehydrogenases)	gene	gene1539	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1544
CH54_1545	CH54_1545		CH54_1545	1671413	1671793	+	crcB-like family protein	[D] COG0239 Integral membrane protein possibly involved in chromosome condensation	gene	gene1540	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1545
CH54_1546	CH54_1546		CH54_1546	1671809	1672213	+	crcB-like family protein	[D] COG0239 Integral membrane protein possibly involved in chromosome condensation	gene	gene1541	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1546
CH54_1547	CH54_1547		CH54_1547	1672296	1673471	-	trkA-N domain protein	[P] COG1226 Kef-type K+ transport systems%2C predicted NAD-binding component	gene	gene1542	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1547
CH54_1548	CH54_1548		CH54_1548	1673817	1674149	+	hdeA/HdeB family protein		gene	gene1543	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1548
CH54_1549	CH54_1549		CH54_1549	1674211	1675269	-	transition metal uptake transporter%2C Ni2+-Co2+ transporter family protein	nico: transition metal uptake transporter%2C Ni2+-Co2+ transporter family protein~[P] COG3376 High-affinity nickel permease	gene	gene1544	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1549
CH54_155	CH54_155		CH54_155	161901	162761	+	ubiE/COQ5 methyltransferase family protein	[QR] COG0500 SAM-dependent methyltransferases	gene	gene154	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_155
CH54_1550	CH54_1550	yut	yut	1675293	1676282	-	urea transporter	urea_trans_yut: urea transporter~[E] COG4413 Urea transporter	gene	gene1545	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1550
CH54_1551	CH54_1551		CH54_1551	1676344	1677327	-	ureD urease accessory family protein	[O] COG0829 Urease accessory protein UreH	gene	gene1546	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1551
CH54_1552	CH54_1552	ureG	ureG	1677324	1677989	-	urease accessory protein UreG	ureG: urease accessory protein UreG~[OK] COG0378 Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase	gene	gene1547	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1552
CH54_1553	CH54_1553		CH54_1553	1678090	1678776	-	ureF family protein	[O] COG0830 Urease accessory protein UreF	gene	gene1548	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1553
CH54_1554	CH54_1554		CH54_1554	1678798	1679484	-	hypothetical protein	ureE urease accessory%2C C-terminal domain protein~[O] COG2371 Urease accessory protein UreE	gene	gene1549	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1554
CH54_1555	CH54_1555	ureC	ureC	1679719	1681437	-	urease%2C alpha subunit	urease_alph: urease%2C alpha subunit~[E] COG0804 Urea amidohydrolase (urease) alpha subunit	gene	gene1550	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1555
CH54_1556	CH54_1556	ureB	ureB	1681535	1682029	-	urease%2C beta subunit	urease_beta: urease%2C beta subunit~[E] COG0832 Urea amidohydrolase (urease) beta subunit	gene	gene1551	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1556
CH54_1557	CH54_1557	ureA	ureA	1682083	1682385	-	urease%2C gamma subunit	urease_gam: urease%2C gamma subunit~[E] COG0831 Urea amidohydrolase (urease) gamma subunit	gene	gene1552	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1557
CH54_1558	CH54_1558		CH54_1558	1682493	1682687	-	hypothetical protein		gene	gene1553	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1558
CH54_1559	CH54_1559		CH54_1559	1683315	1683980	-	ABC transporter family protein	[EP] COG1124 ABC-type dipeptide/oligopeptide/nickel transport system%2C ATPase component	gene	gene1554	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1559
CH54_156	CH54_156		CH54_156	162920	163198	-	hypothetical protein	conserved hypothetical protein	gene	gene155	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_156
CH54_1560	CH54_1560		CH54_1560	1683973	1684779	-	ABC transporter family protein	[R] COG1123 ATPase components of various ABC-type transport systems%2C contain duplicated ATPase	gene	gene1555	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1560
CH54_1561	CH54_1561		CH54_1561	1684779	1685585	-	binding--dependent transport system inner membrane component family protein	[EP] COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems%2C permease components	gene	gene1556	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1561
CH54_1562	CH54_1562		CH54_1562	1685582	1686550	-	binding--dependent transport system inner membrane component family protein	[EP] COG0601 ABC-type dipeptide/oligopeptide/nickel transport systems%2C permease components	gene	gene1557	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1562
CH54_1563	CH54_1563		CH54_1563	1686550	1688127	-	bacterial extracellular solute-binding s%2C 5 Middle family protein	[E] COG0747 ABC-type dipeptide transport system%2C periplasmic component	gene	gene1558	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1563
CH54_1564	CH54_1564		CH54_1564	1688980	1689288	-	putative dNA-directed RNA polymerase		gene	gene1559	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1564
CH54_1565	CH54_1565		CH54_1565	1689398	1689835	-	rhodanese-like domain protein	[P] COG0607 Rhodanese-related sulfurtransferase	gene	gene1560	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1565
CH54_1566	CH54_1566		CH54_1566	1689932	1690918	+	helix-turn-helix domain protein	[K] COG4977 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain	gene	gene1561	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1566
CH54_1567	CH54_1567		CH54_1567	1690988	1691200	-	'Cold-shock' DNA-binding domain protein	[K] COG1278 Cold shock proteins	gene	gene1562	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1567
CH54_1568	CH54_1568		CH54_1568	1691584	1691922	+	mbeD/MobD like family protein		gene	gene1563	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1568
CH54_1569	CH54_1569		CH54_1569	1692013	1692462	+	hypothetical protein	conserved hypothetical protein	gene	gene1564	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1569
CH54_157	CH54_157		CH54_157	163359	165440	-	diguanylate cyclase domain protein	GGDEF: diguanylate cyclase domain protein~[T] COG2202 FOG: PAS/PAC domain	gene	gene156	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_157
CH54_1570	CH54_1570		CH54_1570	1692513	1692848	-	hypothetical protein	conserved hypothetical protein	gene	gene1565	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1570
CH54_1571	CH54_1571		CH54_1571	1693223	1693318	-	hypothetical protein		gene	gene1566	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1571
CH54_1572	CH54_1572		CH54_1572	1693333	1693431	-	putative membrane protein		gene	gene1567	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1572
CH54_1573	CH54_1573		CH54_1573	1693526	1693837	-	acid shock repeat family protein		gene	gene1568	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1573
CH54_1574	CH54_1574		CH54_1574	1694060	1694368	+	hypothetical protein	conserved hypothetical protein~[S] COG4575 Uncharacterized conserved protein	gene	gene1569	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1574
CH54_1575	CH54_1575		CH54_1575	1694498	1695946	-	aminotransferase class I and II family protein	[KE] COG1167 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs	gene	gene1570	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1575
CH54_1576	CH54_1576		CH54_1576	1696042	1696473	+	alkylhydroperoxidase AhpD family core domain protein	ahpD_dom: alkylhydroperoxidase AhpD family core domain protein~[S] COG2128 Uncharacterized conserved protein	gene	gene1571	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1576
CH54_1577	CH54_1577	nrdH	nrdH	1696773	1697009	+	glutaredoxin-like NrdH family protein	glrX_NrdH: glutaredoxin-like NrdH family protein~[O] COG0695 Glutaredoxin and related proteins	gene	gene1572	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1577
CH54_1578	CH54_1578	nrdI	nrdI	1697023	1697427	+	nrdI protein	nrdI: nrdI protein~[F] COG1780 Protein involved in ribonucleotide reduction	gene	gene1573	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1578
CH54_1579	CH54_1579		CH54_1579	1697409	1699559	+	ribonucleoside-diphosphate reductase%2C alpha subunit	nrdE_NrdA: ribonucleoside-diphosphate reductase%2C alpha subunit~[F] COG0209 Ribonucleotide reductase%2C alpha subunit	gene	gene1574	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1579
CH54_158	CH54_158		CH54_158	166020	168311	+	TonB-dependent siderophore receptor family protein	tonB-siderophor: TonB-dependent siderophore receptor family protein~[P] COG1629 Outer membrane receptor proteins%2C mostly Fe transport	gene	gene157	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_158
CH54_1580	CH54_1580		CH54_1580	1699591	1700562	+	ribonucleotide reductase%2C small chain family protein	[F] COG0208 Ribonucleotide reductase%2C beta subunit	gene	gene1575	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1580
CH54_1581	CH54_1581	proV	proV	1701060	1702259	+	glycine betaine/L-proline transport ATP binding subunit	proV: glycine betaine/L-proline transport ATP binding subunit~[E] COG4175 ABC-type proline/glycine betaine transport system%2C ATPase component	gene	gene1576	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1581
CH54_1582	CH54_1582		CH54_1582	1702252	1703418	+	binding--dependent transport system inner membrane component family protein	[E] COG4176 ABC-type proline/glycine betaine transport system%2C permease component	gene	gene1577	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1582
CH54_1583	CH54_1583		CH54_1583	1703578	1704582	+	substrate binding domain of ABC-type glycine betaine transport system family protein	[E] COG2113 ABC-type proline/glycine betaine transport systems%2C periplasmic components	gene	gene1578	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1583
CH54_1584	CH54_1584		CH54_1584	1705082	1705158	-	tRNA-Asp		tRNA	gene1579	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1584
CH54_1585	CH54_1585	dnaQ	dnaQ	1705271	1706035	-	DNA polymerase III%2C epsilon subunit	dnaQ_proteo: DNA polymerase III%2C epsilon subunit~[L] COG0847 DNA polymerase III%2C epsilon subunit and related 3'-5' exonucleases	gene	gene1580	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1585
CH54_1586	CH54_1586		CH54_1586	1706106	1706570	+	RNase H family protein	[L] COG0328 Ribonuclease HI	gene	gene1581	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1586
CH54_1587	CH54_1587		CH54_1587	1706586	1707305	-	methyltransferase domain protein	[QR] COG0500 SAM-dependent methyltransferases	gene	gene1582	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1587
CH54_1588	CH54_1588	gloB	gloB	1707352	1708107	+	hydroxyacylglutathione hydrolase	GSH_gloB: hydroxyacylglutathione hydrolase~[R] COG0491 Zn-dependent hydrolases%2C including glyoxylases	gene	gene1583	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1588
CH54_1589	CH54_1589		CH54_1589	1708140	1709570	+	lysM domain protein	[M] COG0741 Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains)	gene	gene1584	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1589
CH54_159	CH54_159		CH54_159	168443	169015	-	hypothetical protein	conserved hypothetical protein~[S] COG1971 Predicted membrane protein	gene	gene158	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_159
CH54_1590	CH54_1590		CH54_1590	1709622	1710404	-	endonuclease/Exonuclease/phosphatase family protein	[S] COG3021 Uncharacterized protein conserved in bacteria	gene	gene1585	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1590
CH54_1591	CH54_1591		CH54_1591	1710565	1711830	-	transposase DDE domain protein		gene	gene1586	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1591
CH54_1592	CH54_1592		CH54_1592	1711938	1713119	-	sugar (and other) transporter family protein	[G] COG2814 Arabinose efflux permease	gene	gene1587	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1592
CH54_1593	CH54_1593		CH54_1593	1713247	1714149	+	bacterial regulatory helix-turn-helix%2C lysR family protein	[K] COG0583 Transcriptional regulator	gene	gene1588	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1593
CH54_1594	CH54_1594		CH54_1594	1714190	1714993	-	aldo/keto reductase family protein	[R] COG0656 Aldo/keto reductases%2C related to diketogulonate reductase	gene	gene1589	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1594
CH54_1595	CH54_1595		CH54_1595	1715348	1715424	-	tRNA-Asp		tRNA	gene1590	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1595
CH54_1596	CH54_1596		CH54_1596	1715550	1715662	-	5S ribosomal RNA		rRNA	gene1591	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1596
CH54_1597	CH54_1597		CH54_1597	1715782	1718771	-	23S ribosomal RNA		rRNA	gene1592	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1597
CH54_1598	CH54_1598		CH54_1598	1719000	1719075	-	tRNA-Glu		tRNA	gene1593	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1598
CH54_1599	CH54_1599		CH54_1599	1719217	1720745	-	16S ribosomal RNA		rRNA	gene1594	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1599
CH54_16	CH54_16		CH54_16	17223	17675	-	hypothetical protein	conserved hypothetical protein~[S] COG3304 Predicted membrane protein	gene	gene15	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_16
CH54_160	CH54_160		CH54_160	169441	169902	-	hypothetical protein	conserved hypothetical protein~[S] COG4811 Predicted membrane protein	gene	gene159	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_160
CH54_1600	CH54_1600	clpB	clpB	1721263	1723836	-	ATP-dependent chaperone protein ClpB	chaperone_ClpB: ATP-dependent chaperone protein ClpB~[O] COG0542 ATPases with chaperone activity%2C ATP-binding subunit	gene	gene1595	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1600
CH54_1601	CH54_1601		CH54_1601	1723969	1724700	-	multi-copper polyphenol oxidoreductase laccase family protein	[S] COG1496 Uncharacterized conserved protein	gene	gene1596	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1601
CH54_1602	CH54_1602		CH54_1602	1724700	1725677	-	pseudouridine synthase%2C RluA family protein	rluA_subfam: pseudouridine synthase%2C RluA family protein~[J] COG0564 Pseudouridylate synthases%2C 23S RNA-specific	gene	gene1597	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1602
CH54_1603	CH54_1603	yfiO	yfiO	1725813	1726544	+	outer membrane assembly lipoYfiO family protein	OM_YfiO: outer membrane assembly lipoYfiO family protein~[R] COG4105 DNA uptake lipoprotein	gene	gene1598	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1603
CH54_1604	CH54_1604	raiA	raiA	1726909	1727277	+	ribosomal subunit interface protein	yfiA: ribosomal subunit interface protein~[J] COG1544 Ribosome-associated protein Y (PSrp-1)	gene	gene1599	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1604
CH54_1605	CH54_1605		CH54_1605	1727569	1728726	+	chorismate mutase	CM_P_1: chorismate mutase~[E] COG0077 Prephenate dehydratase	gene	gene1600	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1605
CH54_1606	CH54_1606	tyrA	tyrA	1728810	1729931	-	chorismate mutase	CM_T: chorismate mutase~[E] COG0287 Prephenate dehydrogenase	gene	gene1601	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1606
CH54_1607	CH54_1607		CH54_1607	1729935	1731020	-	3-deoxy-7-phosphoheptulonate synthase	aroFGH: 3-deoxy-7-phosphoheptulonate synthase~[E] COG0722 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase	gene	gene1602	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1607
CH54_1608	CH54_1608		CH54_1608	1731249	1731965	+	response regulator	[KT] COG3279 Response regulator of the LytR/AlgR family	gene	gene1603	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1608
CH54_1609	CH54_1609		CH54_1609	1732308	1733651	+	transporter%2C anaerobic C4-dicarboxylate uptake family protein	dcu: transporter%2C anaerobic C4-dicarboxylate uptake family protein~[R] COG2704 Anaerobic C4-dicarboxylate transporter	gene	gene1604	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1609
CH54_161	CH54_161		CH54_161	169968	170831	-	PTS system%2C mannose/fructose/sorbose%2C IID component family protein	EIID-AGA: PTS system%2C mannose/fructose/sorbose%2C IID component family protein~[G] COG3716 Phosphotransferase system%2C mannose/fructose/N-acetylgalactosamine-specific component IID	gene	gene160	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_161
CH54_1610	CH54_1610		CH54_1610	1733892	1734659	+	hypothetical protein	conserved hypothetical protein~[M] COG3137 Putative salt-induced outer membrane protein	gene	gene1605	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1610
CH54_1611	CH54_1611	rplS	rplS	1734877	1735233	-	ribosomal protein L19	rplS_bact: ribosomal protein L19~[J] COG0335 Ribosomal protein L19	gene	gene1606	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1611
CH54_1612	CH54_1612	trmD	trmD	1735313	1736053	-	tRNA (guanine(37)-N(1))-methyltransferase	trmD: tRNA (guanine(37)-N(1))-methyltransferase~[J] COG0336 tRNA-(guanine-N1)-methyltransferase	gene	gene1607	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1612
CH54_1613	CH54_1613	rimM	rimM	1736092	1736640	-	16S rRNA processing protein RimM	16S_RimM: 16S rRNA processing protein RimM~[J] COG0806 RimM protein%2C required for 16S rRNA processing	gene	gene1608	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1613
CH54_1614	CH54_1614	rpsP	rpsP	1736662	1736910	-	ribosomal protein S16	S16: ribosomal protein S16~[J] COG0228 Ribosomal protein S16	gene	gene1609	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1614
CH54_1615	CH54_1615	ffh	ffh	1737209	1738570	-	signal recognition particle protein	ffh: signal recognition particle protein~[U] COG0541 Signal recognition particle GTPase	gene	gene1610	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1615
CH54_1616	CH54_1616		CH54_1616	1738736	1739527	+	cytochrome C assembly family protein	[R] COG4137 ABC-type uncharacterized transport system%2C permease component	gene	gene1611	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1616
CH54_1617	CH54_1617		CH54_1617	1739596	1740876	+	CBS domain protein	[P] COG4536 Putative Mg2+ and Co2+ transporter CorB	gene	gene1612	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1617
CH54_1618	CH54_1618		CH54_1618	1740973	1741488	-	S-Ribosylhomocysteinase family protein	[T] COG1854 LuxS protein involved in autoinducer AI2 synthesis	gene	gene1613	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1618
CH54_1619	CH54_1619	gshA	gshA	1741656	1743254	-	glutamate--cysteine ligase	glu_cys_ligase: glutamate--cysteine ligase~[H] COG2918 Gamma-glutamylcysteine synthetase	gene	gene1614	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1619
CH54_162	CH54_162		CH54_162	170847	171644	-	PTS system%2C mannose/fructose/sorbose%2C IIC component family protein	EII-Sor: PTS system%2C mannose/fructose/sorbose%2C IIC component family protein~[G] COG3715 Phosphotransferase system%2C mannose/fructose/N-acetylgalactosamine-specific component IIC	gene	gene161	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_162
CH54_1620	CH54_1620		CH54_1620	1743298	1743606	-	hypothetical protein	conserved hypothetical protein~[S] COG1238 Predicted membrane protein	gene	gene1615	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1620
CH54_1621	CH54_1621		CH54_1621	1743723	1744289	-	HAD hydrolase%2C IA%2C variant 1 family protein	HAD-SF-IA-v1: HAD hydrolase%2C IA%2C variant 1 family protein~[R] COG0637 Predicted phosphatase/phosphohexomutase	gene	gene1616	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1621
CH54_1622	CH54_1622		CH54_1622	1744537	1744613	-	tRNA-Arg		tRNA	gene1617	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1622
CH54_1623	CH54_1623		CH54_1623	1744687	1744763	-	tRNA-Arg		tRNA	gene1618	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1623
CH54_1624	CH54_1624		CH54_1624	1744822	1744898	-	tRNA-Arg		tRNA	gene1619	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1624
CH54_1625	CH54_1625		CH54_1625	1744907	1744999	-	tRNA-Ser		tRNA	gene1620	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1625
CH54_1626	CH54_1626	csrA	csrA	1745365	1745550	-	carbon storage regulator	csrA: carbon storage regulator~[T] COG1551 Carbon storage regulator (could also regulate swarming and quorum sensing)	gene	gene1621	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1626
CH54_1627	CH54_1627	alaS	alaS	1745804	1748431	-	alanine--tRNA ligase	alaS: alanine--tRNA ligase~[J] COG0013 Alanyl-tRNA synthetase	gene	gene1622	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1627
CH54_1628	CH54_1628		CH54_1628	1748572	1749075	-	recX family protein	[R] COG2137 Uncharacterized protein conserved in bacteria	gene	gene1623	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1628
CH54_1629	CH54_1629	recA	recA	1749397	1750461	-	protein RecA	tigrfam_recA: protein RecA~[L] COG0468 RecA/RadA recombinase	gene	gene1624	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1629
CH54_163	CH54_163		CH54_163	171862	172836	-	PTS system%2C mannose/fructose/sorbose%2C IIB component family protein	pts-sorbose: PTS system%2C mannose/fructose/sorbose%2C IIB component family protein~[G] COG3444 Phosphotransferase system%2C mannose/fructose/N-acetylgalactosamine-specific component IIB	gene	gene162	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_163
CH54_1630	CH54_1630		CH54_1630	1750569	1751063	-	amidohydrolase%2C PncC family domain protein	pncC_: amidohydrolase%2C PncC family domain protein~[R] COG1546 Uncharacterized protein (competence- and mitomycin-induced)	gene	gene1625	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1630
CH54_1631	CH54_1631		CH54_1631	1751300	1752625	+	major Facilitator Superfamily protein	[GEPR] COG0477 Permeases of the major facilitator superfamily	gene	gene1626	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1631
CH54_1632	CH54_1632		CH54_1632	1752791	1753396	-	nitrate reductase delta subunit	[R] COG3381 Uncharacterized component of anaerobic dehydrogenases	gene	gene1627	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1632
CH54_1633	CH54_1633		CH54_1633	1753393	1754244	-	DMSO reductase anchor subunit family protein	[R] COG3302 DMSO reductase anchor subunit	gene	gene1628	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1633
CH54_1634	CH54_1634	dmsB	dmsB	1754246	1754860	-	dimethylsulfoxide reductase%2C chain B	DMSO_dmsB: dimethylsulfoxide reductase%2C chain B~[C] COG0437 Fe-S-cluster-containing hydrogenase components 1	gene	gene1629	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1634
CH54_1635	CH54_1635		CH54_1635	1754872	1757316	-	anaerobic dimethyl sulfoxide reductase%2C A subunit%2C DmsA/YnfE family protein	dmsA_ynfE: anaerobic dimethyl sulfoxide reductase%2C A subunit%2C DmsA/YnfE family protein~[C] COG0243 Anaerobic dehydrogenases%2C typically selenocysteine-containing	gene	gene1630	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1635
CH54_1636	CH54_1636		CH54_1636	1758016	1759659	+	hydrolyase%2C tartrate alpha subunit/fumarate%2C Fe-S type domain protein	ttdA_fumA_fumB: hydrolyase%2C tartrate alpha subunit/fumarate%2C Fe-S type domain protein~[C] COG1951 Tartrate dehydratase alpha subunit/Fumarate hydratase class I%2C N-terminal domain	gene	gene1631	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1636
CH54_1637	CH54_1637		CH54_1637	1760231	1761397	+	urea ABC transporter%2C substrate-binding protein	urea_ABC_arch: urea ABC transporter%2C substrate-binding protein~[E] COG0683 ABC-type branched-chain amino acid transport systems%2C periplasmic component	gene	gene1632	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1637
CH54_1638	CH54_1638		CH54_1638	1761495	1762364	+	branched-chain amino acid transport system / permease component family protein	[E] COG0559 Branched-chain amino acid ABC-type transport system%2C permease components	gene	gene1633	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1638
CH54_1639	CH54_1639		CH54_1639	1762374	1763432	+	branched-chain amino acid transport system / permease component family protein	[E] COG4177 ABC-type branched-chain amino acid transport system%2C permease component	gene	gene1634	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1639
CH54_164	CH54_164		CH54_164	173607	175148	+	integral membrane TerC family protein	[R] COG1253 Hemolysins and related proteins containing CBS domains	gene	gene163	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_164
CH54_1640	CH54_1640		CH54_1640	1763429	1764163	+	ABC transporter family protein	[R] COG4674 Uncharacterized ABC-type transport system%2C ATPase component	gene	gene1635	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1640
CH54_1641	CH54_1641		CH54_1641	1764160	1764879	+	ABC transporter family protein	[E] COG0410 ABC-type branched-chain amino acid transport systems%2C ATPase component	gene	gene1636	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1641
CH54_1642	CH54_1642		CH54_1642	1764911	1765897	+	acetamidase/Formamidase family protein	[C] COG2421 Predicted acetamidase/formamidase	gene	gene1637	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1642
CH54_1643	CH54_1643		CH54_1643	1765977	1767143	+	periplasmic binding domain protein	[E] COG0683 ABC-type branched-chain amino acid transport systems%2C periplasmic component	gene	gene1638	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1643
CH54_1644	CH54_1644		CH54_1644	1767199	1767771	+	ANTAR domain protein	[T] COG3707 Response regulator with putative antiterminator output domain	gene	gene1639	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1644
CH54_1645	CH54_1645		CH54_1645	1767827	1769560	+	carbon-nitrogen hydrolase family protein	[R] COG0388 Predicted amidohydrolase	gene	gene1640	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1645
CH54_1646	CH54_1646		CH54_1646	1769928	1770887	+	putative sugar-binding domain protein	[K] COG2390 Transcriptional regulator%2C contains sigma factor-related N-terminal domain	gene	gene1641	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1646
CH54_1647	CH54_1647		CH54_1647	1771008	1771814	+	3-beta hydroxysteroid dehydrogenase/isomerase family protein	[IQR] COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)	gene	gene1642	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1647
CH54_1648	CH54_1648		CH54_1648	1771826	1772248	+	PTS system%2C mannose/fructose/sorbose family%2C IIA component domain protein	EIIA-man: PTS system%2C mannose/fructose/sorbose family%2C IIA component domain protein~[G] COG2893 Phosphotransferase system%2C mannose/fructose-specific component IIA	gene	gene1643	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1648
CH54_1649	CH54_1649		CH54_1649	1772245	1772736	+	PTS system%2C mannose/fructose/sorbose%2C IIB component family protein	pts-sorbose: PTS system%2C mannose/fructose/sorbose%2C IIB component family protein~[G] COG3444 Phosphotransferase system%2C mannose/fructose/N-acetylgalactosamine-specific component IIB	gene	gene1644	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1649
CH54_165	CH54_165		CH54_165	175753	175953	+	heat-stable enterotoxin ST family protein		gene	gene164	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_165
CH54_1650	CH54_1650		CH54_1650	1772882	1773679	+	PTS system%2C mannose/fructose/sorbose%2C IIC component family protein	EII-Sor: PTS system%2C mannose/fructose/sorbose%2C IIC component family protein~[G] COG3715 Phosphotransferase system%2C mannose/fructose/N-acetylgalactosamine-specific component IIC	gene	gene1645	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1650
CH54_1651	CH54_1651		CH54_1651	1773691	1774521	+	PTS system%2C mannose/fructose/sorbose%2C IID component family protein	EIID-AGA: PTS system%2C mannose/fructose/sorbose%2C IID component family protein~[G] COG3716 Phosphotransferase system%2C mannose/fructose/N-acetylgalactosamine-specific component IID	gene	gene1646	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1651
CH54_1652	CH54_1652		CH54_1652	1774607	1775857	+	zinc-binding dehydrogenase family protein	[ER] COG1063 Threonine dehydrogenase and related Zn-dependent dehydrogenases	gene	gene1647	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1652
CH54_1653	CH54_1653		CH54_1653	1775899	1776243	-	helix-turn-helix domain protein	[K] COG0640 Predicted transcriptional regulators	gene	gene1648	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1653
CH54_1654	CH54_1654	fusA	fusA	1776595	1778703	+	translation elongation factor G	EF-G: translation elongation factor G~[J] COG0480 Translation elongation factors (GTPases)	gene	gene1649	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1654
CH54_1655	CH54_1655		CH54_1655	1778914	1779174	-	hypothetical protein		gene	gene1650	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1655
CH54_1656	CH54_1656		CH54_1656	1779285	1780706	+	cytochrome c family protein	[P] COG1858 Cytochrome c peroxidase	gene	gene1651	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1656
CH54_1657	CH54_1657		CH54_1657	1780851	1781615	+	bacterial extracellular solute-binding s%2C 3 family protein	[ET] COG0834 ABC-type amino acid transport/signal transduction systems%2C periplasmic component/domain	gene	gene1652	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1657
CH54_1658	CH54_1658		CH54_1658	1781693	1782412	-	short chain dehydrogenase family protein	[IQR] COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)	gene	gene1653	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1658
CH54_1659	CH54_1659		CH54_1659	1782432	1782680	-	phosphopantetheine attachment site family protein		gene	gene1654	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1659
CH54_166	CH54_166		CH54_166	176038	177402	-	L-serine ammonia-lyase	sda_mono: L-serine ammonia-lyase~[E] COG1760 L-serine deaminase	gene	gene165	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_166
CH54_1660	CH54_1660		CH54_1660	1782695	1783537	-	maoC like domain protein		gene	gene1655	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1660
CH54_1661	CH54_1661		CH54_1661	1783540	1784790	-	hypothetical protein	beta-ketoacyl synthase%2C C-terminal domain protein~[IQ] COG0304 3-oxoacyl-(acyl-carrier-protein) synthase	gene	gene1656	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1661
CH54_1662	CH54_1662		CH54_1662	1784787	1786205	-	efflux transporter%2C outer membrane factor (OMF) lipo%2C NodT family protein	outer_NodT: efflux transporter%2C outer membrane factor (OMF) lipo%2C NodT family protein~[MU] COG1538 Outer membrane protein	gene	gene1657	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1662
CH54_1663	CH54_1663		CH54_1663	1786202	1788178	-	ABC transporter family protein	[V] COG0577 ABC-type antimicrobial peptide transport system%2C permease component	gene	gene1658	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1663
CH54_1664	CH54_1664		CH54_1664	1788168	1789352	-	efflux transporter%2C RND family%2C MFP subunit	RND_mfp: efflux transporter%2C RND family%2C MFP subunit~[M] COG0845 Membrane-fusion protein	gene	gene1659	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1664
CH54_1665	CH54_1665		CH54_1665	1789352	1791502	-	ABC transporter family protein	[V] COG2274 ABC-type bacteriocin/lantibiotic exporters%2C contain an N-terminal double-glycine peptidase domain	gene	gene1660	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1665
CH54_1666	CH54_1666		CH54_1666	1791528	1792484	-	bacterial lipid A biosynthesis acyltransferase family protein		gene	gene1661	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1666
CH54_1667	CH54_1667		CH54_1667	1792484	1793167	-	DSBA-like thioredoxin domain protein	[OC] COG0526 Thiol-disulfide isomerase and thioredoxins	gene	gene1662	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1667
CH54_1668	CH54_1668		CH54_1668	1793397	1793585	-	hypothetical protein	conserved hypothetical protein	gene	gene1663	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1668
CH54_1669	CH54_1669		CH54_1669	1793919	1794752	-	hypothetical protein		gene	gene1664	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1669
CH54_167	CH54_167		CH54_167	177844	178467	-	NUDIX domain protein	[LR] COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes	gene	gene166	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_167
CH54_1670	CH54_1670		CH54_1670	1794844	1795389	-	fimbrial family protein	[NU] COG3539 P pilus assembly protein%2C pilin FimA	gene	gene1665	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1670
CH54_1671	CH54_1671		CH54_1671	1795399	1795893	-	fimbrial family protein	[NU] COG3539 P pilus assembly protein%2C pilin FimA	gene	gene1666	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1671
CH54_1672	CH54_1672		CH54_1672	1795893	1796450	-	fimbrial family protein	[NU] COG3539 P pilus assembly protein%2C pilin FimA	gene	gene1667	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1672
CH54_1673	CH54_1673		CH54_1673	1796522	1797268	-	hypothetical protein	pili and flagellar-assembly chaperone%2C PapD N-terminal domain protein~[NU] COG3121 P pilus assembly protein%2C chaperone PapD	gene	gene1668	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1673
CH54_1674	CH54_1674		CH54_1674	1797368	1799908	-	hypothetical protein	papC N-terminal domain protein~[NU] COG3188 P pilus assembly protein%2C porin PapC	gene	gene1669	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1674
CH54_1675	CH54_1675		CH54_1675	1799935	1800480	-	fimbrial family protein	[NU] COG3539 P pilus assembly protein%2C pilin FimA	gene	gene1670	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1675
CH54_1676	CH54_1676		CH54_1676	1800566	1801090	-	fimbrial family protein	[NU] COG3539 P pilus assembly protein%2C pilin FimA	gene	gene1671	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1676
CH54_1677	CH54_1677		CH54_1677	1802025	1802288	+	hypothetical protein		gene	gene1672	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1677
CH54_1678	CH54_1678		CH54_1678	1802390	1804054	+	hypothetical protein	conserved hypothetical protein~[M] COG3307 Lipid A core - O-antigen ligase and related enzymes	gene	gene1673	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1678
CH54_1679	CH54_1679	mutS	mutS	1804214	1806769	+	DNA mismatch repair protein MutS	mutS1: DNA mismatch repair protein MutS~[L] COG0249 Mismatch repair ATPase (MutS family)	gene	gene1674	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1679
CH54_168	CH54_168	pabB	pabB	178497	179864	-	aminodeoxychorismate synthase%2C component I	pabB: aminodeoxychorismate synthase%2C component I~[EH] COG0147 Anthranilate/para-aminobenzoate synthases component I	gene	gene167	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_168
CH54_1680	CH54_1680	rpoS	rpoS	1806846	1807844	-	RNA polymerase sigma factor RpoS	rpoS_proteo: RNA polymerase sigma factor RpoS~[K] COG0568 DNA-directed RNA polymerase%2C sigma subunit (sigma70/sigma32)	gene	gene1675	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1680
CH54_1681	CH54_1681		CH54_1681	1807899	1808864	-	lysM domain protein	[M] COG0739 Membrane proteins related to metalloendopeptidases	gene	gene1676	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1681
CH54_1682	CH54_1682	pcm	pcm	1809058	1809684	-	protein-L-isoaspartate O-methyltransferase	pimt: protein-L-isoaspartate O-methyltransferase~[O] COG2518 Protein-L-isoaspartate carboxylmethyltransferase	gene	gene1677	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1682
CH54_1683	CH54_1683	surE	surE	1809678	1810442	-	5'/3'-nucleotidase SurE	surE: 5'/3'-nucleotidase SurE~[R] COG0496 Predicted acid phosphatase	gene	gene1678	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1683
CH54_1684	CH54_1684		CH54_1684	1810420	1811469	-	tRNA pseudouridine synthase%2C TruD family protein	tRNA_TruD_broad: tRNA pseudouridine synthase%2C TruD family protein~[S] COG0585 Uncharacterized conserved protein	gene	gene1679	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1684
CH54_1685	CH54_1685	ispF	ispF	1811480	1811968	-	2-C-methyl-D-erythritol 2%2C4-cyclodiphosphate synthase	ispF: 2-C-methyl-D-erythritol 2%2C4-cyclodiphosphate synthase~[I] COG0245 2C-methyl-D-erythritol 2%2C4-cyclodiphosphate synthase	gene	gene1680	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1685
CH54_1686	CH54_1686	ispD	ispD	1811968	1812726	-	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	ispD: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase~[I] COG1211 4-diphosphocytidyl-2-methyl-D-erithritol synthase	gene	gene1681	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1686
CH54_1687	CH54_1687		CH54_1687	1812730	1813053	-	septum formation initiator family protein	[D] COG2919 Septum formation initiator	gene	gene1682	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1687
CH54_1688	CH54_1688		CH54_1688	1813650	1814423	+	bacterial extracellular solute-binding s%2C 3 family protein	[ET] COG0834 ABC-type amino acid transport/signal transduction systems%2C periplasmic component/domain	gene	gene1683	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1688
CH54_1689	CH54_1689		CH54_1689	1814527	1815294	+	amino ABC transporter%2C permease%2C 3-TM region%2C His/Glu/Gln/Arg/opine family domain protein	HEQRo_perm_3TM: amino ABC transporter%2C permease%2C 3-TM region%2C His/Glu/Gln/Arg/opine family domain protein~[E] COG0765 ABC-type amino acid transport system%2C permease component	gene	gene1684	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1689
CH54_169	CH54_169		CH54_169	180065	180322	+	hypothetical protein	conserved hypothetical protein~[S] COG3140 Uncharacterized protein conserved in bacteria	gene	gene168	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_169
CH54_1690	CH54_1690		CH54_1690	1815278	1816012	+	ABC transporter family protein	[E] COG1126 ABC-type polar amino acid transport system%2C ATPase component	gene	gene1685	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1690
CH54_1691	CH54_1691		CH54_1691	1816074	1816391	-	hypothetical protein	conserved hypothetical protein	gene	gene1686	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1691
CH54_1692	CH54_1692	cysC	cysC	1816451	1817071	-	adenylyl-sulfate kinase	apsK: adenylyl-sulfate kinase~[P] COG0529 Adenylylsulfate kinase and related kinases	gene	gene1687	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1692
CH54_1693	CH54_1693	cysN	cysN	1817073	1818590	-	sulfate adenylyltransferase%2C large subunit	cysN: sulfate adenylyltransferase%2C large subunit~[P] COG2895 GTPases - Sulfate adenylate transferase subunit 1	gene	gene1688	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1693
CH54_1694	CH54_1694	cysD	cysD	1818601	1819509	-	sulfate adenylyltransferase%2C small subunit	cysD: sulfate adenylyltransferase%2C small subunit~[EH] COG0175 3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase and related enzymes	gene	gene1689	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1694
CH54_1695	CH54_1695	cobA	cobA	1819520	1820938	-	uroporphyrinogen-III C-methyltransferase	cobA_cysG_Cterm: uroporphyrinogen-III C-methyltransferase~[H] COG0007 Uroporphyrinogen-III methylase	gene	gene1690	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1695
CH54_1696	CH54_1696		CH54_1696	1821224	1822294	+	peptidase M20/M25/M40 family protein	[R] COG2234 Predicted aminopeptidases	gene	gene1691	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1696
CH54_1697	CH54_1697	cysH	cysH	1822351	1823085	-	phosphoadenosine phosphosulfate reductase	PAPS_reductase: phosphoadenosine phosphosulfate reductase~[EH] COG0175 3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase and related enzymes	gene	gene1692	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1697
CH54_1698	CH54_1698	cysI	cysI	1823082	1824830	-	sulfite reductase (NADPH) hemoprotein%2C beta-component	cysI: sulfite reductase (NADPH) hemoprotein%2C beta-component~[P] COG0155 Sulfite reductase%2C beta subunit (hemoprotein)	gene	gene1693	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1698
CH54_1699	CH54_1699		CH54_1699	1824830	1826632	-	sulfite reductase [NADPH] flavoprotein%2C alpha-component	cysJ: sulfite reductase [NADPH] flavoprotein%2C alpha-component~[P] COG0369 Sulfite reductase%2C alpha subunit (flavoprotein)	gene	gene1694	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1699
CH54_17	CH54_17		CH54_17	17868	19922	+	hypothetical protein	uvrD/REP helicase N-terminal domain protein~[L] COG0210 Superfamily I DNA and RNA helicases	gene	gene16	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_17
CH54_170	CH54_170	purT	purT	180442	181623	-	phosphoribosylglycinamide formyltransferase 2	purT: phosphoribosylglycinamide formyltransferase 2~[F] COG0027 Formate-dependent phosphoribosylglycinamide formyltransferase (GAR transformylase)	gene	gene169	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_170
CH54_1700	CH54_1700	queD	queD	1827014	1827376	+	queuosine biosynthesis protein QueD	queuosine_QueD: queuosine biosynthesis protein QueD~[H] COG0720 6-pyruvoyl-tetrahydropterin synthase	gene	gene1695	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1700
CH54_1701	CH54_1701		CH54_1701	1827522	1828193	-	putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	rSAM_QueE_Ecoli: putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE~[O] COG0602 Organic radical activating enzymes	gene	gene1696	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1701
CH54_1702	CH54_1702		CH54_1702	1828297	1828821	-	copper/zinc superoxide dismutase family protein	[P] COG2032 Cu/Zn superoxide dismutase	gene	gene1697	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1702
CH54_1703	CH54_1703		CH54_1703	1829426	1829830	-	hypothetical protein		gene	gene1698	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1703
CH54_1704	CH54_1704		CH54_1704	1829842	1831032	-	pyridine nucleotide-disulfide oxidoreductase family protein	[R] COG0446 Uncharacterized NAD(FAD)-dependent dehydrogenases	gene	gene1699	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1704
CH54_1705	CH54_1705		CH54_1705	1831460	1832652	+		transposase DDE domain protein	pseudogene	gene1700	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1705
CH54_1707	CH54_1707	eno	eno	1832728	1834023	-	phosphopyruvate hydratase	eno: phosphopyruvate hydratase~[G] COG0148 Enolase	gene	gene1701	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1707
CH54_1708	CH54_1708	pyrG	pyrG	1834103	1835740	-	CTP synthase	pyrG: CTP synthase~[F] COG0504 CTP synthase (UTP-ammonia lyase)	gene	gene1702	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1708
CH54_1709	CH54_1709		CH54_1709	1835952	1836794	-	MazG family protein	mazG: MazG family protein~[R] COG1694 Predicted pyrophosphatase	gene	gene1703	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1709
CH54_171	CH54_171		CH54_171	181865	183247	+	DEAD/DEAH box helicase family protein	[LKJ] COG0513 Superfamily II DNA and RNA helicases	gene	gene170	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_171
CH54_1710	CH54_1710		CH54_1710	1836959	1839193	-	RelA/SpoT family protein	spoT_relA: RelA/SpoT family protein~[TK] COG0317 Guanosine polyphosphate pyrophosphohydrolases/synthetases	gene	gene1704	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1710
CH54_1711	CH54_1711		CH54_1711	1840108	1842870	+	HAMP domain protein	[T] COG0642 Signal transduction histidine kinase	gene	gene1705	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1711
CH54_1712	CH54_1712		CH54_1712	1842984	1844426	-	peptidase Do family protein	degP_htrA_DO: peptidase Do family protein~[O] COG0265 Trypsin-like serine proteases%2C typically periplasmic%2C contain C-terminal PDZ domain	gene	gene1706	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1712
CH54_1713	CH54_1713	dgt	dgt	1844735	1846252	-	dGTPase family protein	dGTP_triPase: dGTPase family protein~[F] COG0232 dGTP triphosphohydrolase	gene	gene1707	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1713
CH54_1714	CH54_1714	mtnN	mtnN	1846440	1847141	+	MTA/SAH nucleosidase	MTA/SAH-Nsdase: MTA/SAH nucleosidase~[F] COG0775 Nucleoside phosphorylase	gene	gene1708	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1714
CH54_1715	CH54_1715		CH54_1715	1847141	1848004	+	periplasmic binding family protein	[P] COG0614 ABC-type Fe3+-hydroxamate transport system%2C periplasmic component	gene	gene1709	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1715
CH54_1716	CH54_1716		CH54_1716	1848004	1848618	+	hypothetical protein	conserved hypothetical protein~[S] COG2860 Predicted membrane protein	gene	gene1710	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1716
CH54_1717	CH54_1717		CH54_1717	1848832	1849134	+	hypothetical protein	conserved hypothetical protein	gene	gene1711	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1717
CH54_1718	CH54_1718		CH54_1718	1849328	1849672	-	iron-sulfur cluster assembly accessory family protein	[S] COG0316 Uncharacterized conserved protein	gene	gene1712	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1718
CH54_1719	CH54_1719		CH54_1719	1849790	1851223	-	voltage gated chloride channel family protein	[P] COG0038 Chloride channel protein EriC	gene	gene1713	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1719
CH54_172	CH54_172		CH54_172	183343	183663	+	yebG family protein	[S] COG3141 Uncharacterized protein conserved in bacteria	gene	gene171	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_172
CH54_1720	CH54_1720	hemL	hemL	1851493	1852773	+	glutamate-1-semialdehyde-2%2C1-aminomutase	hemL: glutamate-1-semialdehyde-2%2C1-aminomutase~[H] COG0001 Glutamate-1-semialdehyde aminotransferase	gene	gene1714	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1720
CH54_1721	CH54_1721		CH54_1721	1852823	1854820	-	fecCD transport family protein	[P] COG0609 ABC-type Fe3+-siderophore transport system%2C permease component	gene	gene1715	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1721
CH54_1722	CH54_1722		CH54_1722	1854817	1855755	-	periplasmic binding family protein	[P] COG0614 ABC-type Fe3+-hydroxamate transport system%2C periplasmic component	gene	gene1716	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1722
CH54_1723	CH54_1723		CH54_1723	1855755	1856549	-	ABC transporter family protein	[PH] COG1120 ABC-type cobalamin/Fe3+-siderophores transport systems%2C ATPase components	gene	gene1717	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1723
CH54_1724	CH54_1724	mrcB	mrcB	1856791	1859280	-	penicillin-binding protein 1B	PBP_1b: penicillin-binding protein 1B~[M] COG0744 Membrane carboxypeptidase (penicillin-binding protein)	gene	gene1718	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1724
CH54_1725	CH54_1725	hrpB	hrpB	1859388	1861913	-	ATP-dependent helicase HrpB	DEAH_box_HrpB: ATP-dependent helicase HrpB~[L] COG1643 HrpA-like helicases	gene	gene1719	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1725
CH54_1726	CH54_1726		CH54_1726	1861954	1862541	+	2'-5' RNA ligase	2_5_ligase: 2'-5' RNA ligase~[J] COG1514 2'-5' RNA ligase	gene	gene1720	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1726
CH54_1727	CH54_1727	sfsA	sfsA	1862531	1863295	+	sugar fermentation stimulation protein	sfsA: sugar fermentation stimulation protein~[R] COG1489 DNA-binding protein%2C stimulates sugar fermentation	gene	gene1721	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1727
CH54_1728	CH54_1728	dksA	dksA	1863475	1863930	+	RNA polymerase-binding protein DksA	dksA: RNA polymerase-binding protein DksA~[T] COG1734 DnaK suppressor protein	gene	gene1722	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1728
CH54_1729	CH54_1729	gluQ	gluQ	1864227	1865135	+	glutamyl-queuosine tRNA(Asp) synthetase	queuosine_YadB: glutamyl-queuosine tRNA(Asp) synthetase~[J] COG0008 Glutamyl- and glutaminyl-tRNA synthetases	gene	gene1723	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1729
CH54_173	CH54_173		CH54_173	183703	184011	+	ASCH domain protein	[S] COG3097 Uncharacterized protein conserved in bacteria	gene	gene172	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_173
CH54_1730	CH54_1730	pcnB	pcnB	1865318	1866754	+	poly(A) polymerase family protein	pcnB: poly(A) polymerase family protein~[J] COG0617 tRNA nucleotidyltransferase/poly(A) polymerase	gene	gene1724	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1730
CH54_1731	CH54_1731	folK	folK	1866763	1867242	+	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase	folK: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase~[H] COG0801 7%2C8-dihydro-6-hydroxymethylpterin-pyrophosphokinase	gene	gene1725	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1731
CH54_1732	CH54_1732	panB	panB	1867326	1868123	+	3-methyl-2-oxobutanoate hydroxymethyltransferase	panB: 3-methyl-2-oxobutanoate hydroxymethyltransferase~[H] COG0413 Ketopantoate hydroxymethyltransferase	gene	gene1726	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1732
CH54_1733	CH54_1733	panC	panC	1868156	1869010	+	pantoate--beta-alanine ligase	panC: pantoate--beta-alanine ligase~[H] COG0414 Panthothenate synthetase	gene	gene1727	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1733
CH54_1734	CH54_1734	panD	panD	1869201	1869581	+	aspartate 1-decarboxylase	panD: aspartate 1-decarboxylase~[H] COG0853 Aspartate 1-decarboxylase	gene	gene1728	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1734
CH54_1735	CH54_1735		CH54_1735	1869809	1871116	-	polysaccharide deacetylase family protein	[G] COG0726 Predicted xylanase/chitin deacetylase	gene	gene1729	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1735
CH54_1736	CH54_1736		CH54_1736	1871492	1872262	-	ABC-2 type transporter family protein	[V] COG0842 ABC-type multidrug transport system%2C permease component	gene	gene1730	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1736
CH54_1737	CH54_1737		CH54_1737	1872259	1873185	-	ABC transporter family protein	[V] COG1131 ABC-type multidrug transport system%2C ATPase component	gene	gene1731	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1737
CH54_1738	CH54_1738		CH54_1738	1873420	1874082	+	carbonic anhydrase family protein	[P] COG0288 Carbonic anhydrase	gene	gene1732	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1738
CH54_1739	CH54_1739	hpt	hpt	1874304	1874840	-	hypoxanthine phosphoribosyltransferase	HGPRTase: hypoxanthine phosphoribosyltransferase~[F] COG0634 Hypoxanthine-guanine phosphoribosyltransferase	gene	gene1733	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1739
CH54_174	CH54_174		CH54_174	184116	184472	+	yebF-like family protein		gene	gene173	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_174
CH54_1740	CH54_1740		CH54_1740	1875084	1875704	+	hypothetical protein		gene	gene1734	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1740
CH54_1741	CH54_1741		CH54_1741	1875743	1877344	-	multicopper oxidase family protein	[Q] COG2132 Putative multicopper oxidases	gene	gene1735	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1741
CH54_1742	CH54_1742		CH54_1742	1877561	1877929	+	bacterial chaperone lipo family protein		gene	gene1736	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1742
CH54_1743	CH54_1743	speE	speE	1878044	1878907	+	spermidine synthase	speE: spermidine synthase~[E] COG0421 Spermidine synthase	gene	gene1737	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1743
CH54_1744	CH54_1744	speD	speD	1878932	1879726	+	S-adenosylmethionine decarboxylase proenzyme	SAM_DCase_Eco: S-adenosylmethionine decarboxylase proenzyme~[E] COG1586 S-adenosylmethionine decarboxylase	gene	gene1738	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1744
CH54_1745	CH54_1745		CH54_1745	1879811	1880308	-	hypothetical protein	conserved hypothetical protein	gene	gene1739	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1745
CH54_1746	CH54_1746		CH54_1746	1880308	1885500	-	hypothetical protein	adhes_NPXG: filamentous hemagglutinin family N-terminal domain protein~[U] COG3210 Large exoproteins involved in heme utilization or adhesion	gene	gene1740	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1746
CH54_1747	CH54_1747		CH54_1747	1886706	1887068	-	hypothetical protein	conserved hypothetical protein~[S] COG3112 Uncharacterized protein conserved in bacteria	gene	gene1742	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1747
CH54_1748	CH54_1748		CH54_1748	1885832	1886719	+	eamA-like transporter family protein	[GER] COG0697 Permeases of the drug/metabolite transporter (DMT) superfamily	gene	gene1741	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1748
CH54_1749	CH54_1749		CH54_1749	1887110	1887202	-	hypothetical protein		gene	gene1743	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1749
CH54_175	CH54_175		CH54_175	184660	186714	+	prolyl oligopeptidase family protein	[E] COG1770 Protease II	gene	gene174	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_175
CH54_1750	CH54_1750	acnB	acnB	1887234	1889831	-	aconitate hydratase 2	acnB: aconitate hydratase 2~[C] COG1049 Aconitase B	gene	gene1744	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1750
CH54_1751	CH54_1751		CH54_1751	1890274	1892568	-	TonB-dependent siderophore receptor family protein	tonB-siderophor: TonB-dependent siderophore receptor family protein~[P] COG4771 Outer membrane receptor for ferrienterochelin and colicins	gene	gene1745	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1751
CH54_1752	CH54_1752		CH54_1752	1892778	1893785	+	helix-turn-helix domain protein	[K] COG2207 AraC-type DNA-binding domain-containing proteins	gene	gene1746	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1752
CH54_1753	CH54_1753		CH54_1753	1893984	1895312	+	ADP-ribosyltransferase exoenzyme family protein		gene	gene1747	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1753
CH54_1754	CH54_1754	lpdA	lpdA	1895393	1896817	-	dihydrolipoyl dehydrogenase	lipoamide_DH: dihydrolipoyl dehydrogenase~[C] COG1249 Pyruvate/2-oxoglutarate dehydrogenase complex%2C dihydrolipoamide dehydrogenase (E3) component%2C and related enzymes	gene	gene1748	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1754
CH54_1755	CH54_1755	aceF	aceF	1897024	1898613	-	dihydrolipoyllysine-residue acetyltransferase	PDHac_trf_long: dihydrolipoyllysine-residue acetyltransferase~[C] COG0508 Pyruvate/2-oxoglutarate dehydrogenase complex%2C dihydrolipoamide acyltransferase (E2) component%2C and related enzymes	gene	gene1749	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1755
CH54_1756	CH54_1756	aceE	aceE	1898628	1901291	-	pyruvate dehydrogenase (acetyl-transferring)%2C homodimeric type	aceE: pyruvate dehydrogenase (acetyl-transferring)%2C homodimeric type~[C] COG2609 Pyruvate dehydrogenase complex%2C dehydrogenase (E1) component	gene	gene1750	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1756
CH54_1757	CH54_1757		CH54_1757	1901593	1902357	-	bacterial regulatory s%2C gntR family protein	[K] COG2186 Transcriptional regulators	gene	gene1751	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1757
CH54_1758	CH54_1758		CH54_1758	1903087	1904451	+	amino acid permease family protein	[E] COG1113 Gamma-aminobutyrate permease and related permeases	gene	gene1752	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1758
CH54_1759	CH54_1759		CH54_1759	1904629	1905483	-	hypothetical protein	[V] COG3725 Membrane protein required for beta-lactamase induction	gene	gene1753	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1759
CH54_176	CH54_176		CH54_176	186728	187387	-	exonuclease family protein	[L] COG0847 DNA polymerase III%2C epsilon subunit and related 3'-5' exonucleases	gene	gene175	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_176
CH54_1760	CH54_1760		CH54_1760	1905627	1906220	-	N-acetylmuramoyl-L-alanine amidase family protein	[V] COG3023 Negative regulator of beta-lactamase expression	gene	gene1754	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1760
CH54_1761	CH54_1761	nadC	nadC	1906333	1907241	+	nicotinate-nucleotide diphosphorylase	nadC: nicotinate-nucleotide diphosphorylase~[H] COG0157 Nicotinate-nucleotide pyrophosphorylase	gene	gene1755	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1761
CH54_1762	CH54_1762		CH54_1762	1907445	1907879	+	hypothetical protein	IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain protein~[NU] COG4969 Tfp pilus assembly protein%2C major pilin PilA	gene	gene1756	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1762
CH54_1763	CH54_1763		CH54_1763	1907883	1909421	+	type II/IV secretion system family protein	[NU] COG2804 Type II secretory pathway%2C ATPase PulE/Tfp pilus assembly pathway%2C ATPase PilB	gene	gene1757	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1763
CH54_1764	CH54_1764		CH54_1764	1909418	1910617	+	type II secretion system (T2SS)%2C F family protein	[NU] COG1459 Type II secretory pathway%2C component PulF	gene	gene1758	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1764
CH54_1765	CH54_1765	guaC	guaC	1910754	1911797	-	guanosine monophosphate reductase	GMP_reduct_1: guanosine monophosphate reductase~[F] COG0516 IMP dehydrogenase/GMP reductase	gene	gene1759	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1765
CH54_1766	CH54_1766	coaE	coaE	1912093	1912713	+	dephospho-CoA kinase	[H] COG0237 Dephospho-CoA kinase	gene	gene1760	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1766
CH54_1767	CH54_1767		CH54_1767	1912710	1913462	+	hypothetical protein	conserved hypothetical protein~[S] COG4582 Uncharacterized protein conserved in bacteria	gene	gene1761	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1767
CH54_1768	CH54_1768		CH54_1768	1913675	1913881	+	hypothetical protein	conserved hypothetical protein~[S] COG3024 Uncharacterized protein conserved in bacteria	gene	gene1762	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1768
CH54_1769	CH54_1769		CH54_1769	1913940	1914326	-	mutator mutT family protein	mutt: mutator mutT family protein~[LR] COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes	gene	gene1763	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1769
CH54_177	CH54_177	pip	pip	187906	188862	+	prolyl aminopeptidase	pro_imino_pep_1: prolyl aminopeptidase~[R] COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily)	gene	gene176	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_177
CH54_1770	CH54_1770	secA	secA	1914484	1917198	-	preprotein translocase%2C SecA subunit	secA: preprotein translocase%2C SecA subunit~[U] COG0653 Preprotein translocase subunit SecA (ATPase%2C RNA helicase)	gene	gene1764	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1770
CH54_1771	CH54_1771		CH54_1771	1917275	1917808	-	secretion monitor family protein		gene	gene1765	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1771
CH54_1772	CH54_1772		CH54_1772	1917837	1918367	+	hypothetical protein	conserved hypothetical protein~[S] COG4701 Uncharacterized protein conserved in bacteria	gene	gene1766	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1772
CH54_1773	CH54_1773	lpxC	lpxC	1918370	1919290	-	UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase	lpxC: UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase~[M] COG0774 UDP-3-O-acyl-N-acetylglucosamine deacetylase	gene	gene1767	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1773
CH54_1774	CH54_1774	ftsZ	ftsZ	1919391	1920542	-	cell division protein FtsZ	ftsZ: cell division protein FtsZ~[D] COG0206 Cell division GTPase	gene	gene1768	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1774
CH54_1775	CH54_1775	ftsA	ftsA	1920615	1921871	-	cell division protein FtsA	ftsA: cell division protein FtsA~[D] COG0849 Actin-like ATPase involved in cell division	gene	gene1769	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1775
CH54_1776	CH54_1776		CH54_1776	1921868	1922725	-	cell division FtsQ family protein	[M] COG1589 Cell division septal protein	gene	gene1770	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1776
CH54_1777	CH54_1777		CH54_1777	1922727	1923647	-	D-alanine--D-alanine ligase family protein	D_ala_D_alaTIGR: D-alanine--D-alanine ligase family protein~[M] COG1181 D-alanine-D-alanine ligase and related ATP-grasp enzymes	gene	gene1771	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1777
CH54_1778	CH54_1778	murC	murC	1923640	1925250	-	UDP-N-acetylmuramate--L-alanine ligase	murC: UDP-N-acetylmuramate--L-alanine ligase~[M] COG0773 UDP-N-acetylmuramate-alanine ligase	gene	gene1772	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1778
CH54_1779	CH54_1779	murG	murG	1925204	1926271	-	undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase	murG: undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase~[M] COG0707 UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase	gene	gene1773	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1779
CH54_178	CH54_178		CH54_178	188912	189145	-	DNA polymerase III%2C theta subunit		gene	gene177	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_178
CH54_1780	CH54_1780	ftsW	ftsW	1926268	1927470	-	cell division protein FtsW	ftsW: cell division protein FtsW~[D] COG0772 Bacterial cell division membrane protein	gene	gene1774	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1780
CH54_1781	CH54_1781	murD	murD	1927470	1928804	-	UDP-N-acetylmuramoylalanine--D-glutamate ligase	murD: UDP-N-acetylmuramoylalanine--D-glutamate ligase~[M] COG0771 UDP-N-acetylmuramoylalanine-D-glutamate ligase	gene	gene1775	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1781
CH54_1782	CH54_1782	mraY	mraY	1928807	1929889	-	phospho-N-acetylmuramoyl-pentapeptide-transferase	mraY: phospho-N-acetylmuramoyl-pentapeptide-transferase~[M] COG0472 UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase	gene	gene1776	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1782
CH54_1783	CH54_1783	murF	murF	1929883	1931259	-	UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase family protein	murF: UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase family protein~[M] COG0770 UDP-N-acetylmuramyl pentapeptide synthase	gene	gene1777	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1783
CH54_1784	CH54_1784	murE	murE	1931256	1932743	-	UDP-N-acetylmuramyl-tripeptide synthetase family protein	murE: UDP-N-acetylmuramyl-tripeptide synthetase family protein~[M] COG0769 UDP-N-acetylmuramyl tripeptide synthase	gene	gene1778	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1784
CH54_1785	CH54_1785		CH54_1785	1932730	1934493	-	penicillin binding transpeptidase domain protein	[M] COG0768 Cell division protein FtsI/penicillin-binding protein 2	gene	gene1779	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1785
CH54_1786	CH54_1786	ftsL	ftsL	1934557	1934874	-	cell division protein FtsL	ftsL_broad: cell division protein FtsL~[D] COG3116 Cell division protein	gene	gene1780	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1786
CH54_1787	CH54_1787	rsmH	rsmH	1934871	1935833	-	16S rRNA (cytosine(1402)-N(4))-methyltransferase	[M] COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis	gene	gene1781	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1787
CH54_1788	CH54_1788		CH54_1788	1935836	1936294	-	mraZ family protein	[S] COG2001 Uncharacterized protein conserved in bacteria	gene	gene1782	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1788
CH54_1789	CH54_1789		CH54_1789	1937218	1937658	+	hypothetical protein	conserved hypothetical protein	gene	gene1783	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1789
CH54_179	CH54_179		CH54_179	189539	190048	+	ferritin-like domain protein	[P] COG1528 Ferritin-like protein	gene	gene178	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_179
CH54_1790	CH54_1790		CH54_1790	1937855	1938859	-	D-fructose-responsive transcription factor family protein	fruct_sucro_rep: D-fructose-responsive transcription factor family protein~[K] COG1609 Transcriptional regulators	gene	gene1784	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1790
CH54_1791	CH54_1791	ilvN	ilvN	1939202	1939696	-	acetolactate synthase%2C small subunit	acolac_sm: acetolactate synthase%2C small subunit~[E] COG0440 Acetolactate synthase%2C small (regulatory) subunit	gene	gene1785	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1791
CH54_1792	CH54_1792	ilvB	ilvB	1939699	1941426	-	acetolactate synthase%2C large subunit%2C biosynthetic type	acolac_lg: acetolactate synthase%2C large subunit%2C biosynthetic type~[EH] COG0028 Thiamine pyrophosphate-requiring enzymes [acetolactate synthase%2C pyruvate dehydrogenase (cytochrome)%2C glyoxylate carboligase%2C phosphonopyruvate decarboxylase]	gene	gene1786	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1792
CH54_1793	CH54_1793		CH54_1793	1941893	1943692	-	AMP-binding enzyme family protein	[I] COG1022 Long-chain acyl-CoA synthetases (AMP-forming)	gene	gene1787	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1793
CH54_1794	CH54_1794		CH54_1794	1944010	1944966	-	bacterial regulatory helix-turn-helix%2C lysR family protein	[K] COG0583 Transcriptional regulator	gene	gene1788	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1794
CH54_1795	CH54_1795		CH54_1795	1945324	1945431	+	hypothetical protein		gene	gene1789	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1795
CH54_1796	CH54_1796	leuA	leuA	1946052	1947614	+	2-isopropylmalate synthase	leuA_bact: 2-isopropylmalate synthase~[E] COG0119 Isopropylmalate/homocitrate/citramalate synthases	gene	gene1790	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1796
CH54_1797	CH54_1797	leuB	leuB	1947617	1948708	+	3-isopropylmalate dehydrogenase	leuB: 3-isopropylmalate dehydrogenase~[CE] COG0473 Isocitrate/isopropylmalate dehydrogenase	gene	gene1791	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1797
CH54_1798	CH54_1798	leuC	leuC	1948710	1950140	+	3-isopropylmalate dehydratase%2C large subunit	leuC: 3-isopropylmalate dehydratase%2C large subunit~[E] COG0065 3-isopropylmalate dehydratase large subunit	gene	gene1792	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1798
CH54_1799	CH54_1799	leuD	leuD	1950155	1950793	+	3-isopropylmalate dehydratase%2C small subunit	leuD: 3-isopropylmalate dehydratase%2C small subunit~[E] COG0066 3-isopropylmalate dehydratase small subunit	gene	gene1793	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1799
CH54_18	CH54_18		CH54_18	19943	20071	-	hypothetical protein	conserved hypothetical protein	gene	gene17	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_18
CH54_180	CH54_180		CH54_180	190438	190824	+	copC domain protein	[R] COG2372 Uncharacterized protein%2C homolog of Cu resistance protein CopC	gene	gene179	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_180
CH54_1800	CH54_1800	tnaC	tnaC	1951115	1951213	+	tryptophanase leader peptide	tnaC_leader: tryptophanase leader peptide	gene	gene1794	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1800
CH54_1801	CH54_1801	tnaA	tnaA	1951411	1952811	+	tryptophanase	tnaA_trp_ase: tryptophanase~[E] COG3033 Tryptophanase	gene	gene1795	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1801
CH54_1802	CH54_1802		CH54_1802	1952930	1954111	-	sugar efflux transporter family protein	2A0120: sugar efflux transporter family protein~[GEPR] COG0477 Permeases of the major facilitator superfamily	gene	gene1796	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1802
CH54_1803	CH54_1803		CH54_1803	1954355	1956787	-	glycyl radical enzyme%2C PFL2/glycerol dehydratase family protein	PFL2-3: glycyl radical enzyme%2C PFL2/glycerol dehydratase family protein~[C] COG1882 Pyruvate-formate lyase	gene	gene1797	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1803
CH54_1804	CH54_1804		CH54_1804	1956792	1957691	-	glycyl-radical enzyme activating family protein	PFLE_PFLC: glycyl-radical enzyme activating family protein~[O] COG1180 Pyruvate-formate lyase-activating enzyme	gene	gene1798	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1804
CH54_1805	CH54_1805		CH54_1805	1957796	1959457	+	bacterial extracellular solute-binding s%2C 5 Middle family protein	[R] COG4533 ABC-type uncharacterized transport system%2C periplasmic component	gene	gene1799	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1805
CH54_1806	CH54_1806	thiB	thiB	1959837	1960826	+	thiamin/thiamine pyrophosphate ABC transporter%2C thiamin/thiamine pyrophospate-binding protein	thiB: thiamin/thiamin pyrophosphate ABC transporter%2C thiamin/thiamin pyrophospate-binding protein~[H] COG4143 ABC-type thiamine transport system%2C periplasmic component	gene	gene1800	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1806
CH54_1807	CH54_1807	thiP	thiP	1960802	1962409	+	thiamine/thiamine pyrophosphate ABC transporter%2C permease protein	thiP: thiamine/thiamine pyrophosphate ABC transporter%2C permease protein~[P] COG1178 ABC-type Fe3+ transport system%2C permease component	gene	gene1801	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1807
CH54_1808	CH54_1808	thiQ	thiQ	1962396	1963100	+	thiamine ABC transporter%2C ATP-binding protein	thiQ: thiamine ABC transporter%2C ATP-binding protein~[H] COG3840 ABC-type thiamine transport system%2C ATPase component	gene	gene1802	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1808
CH54_1809	CH54_1809		CH54_1809	1963145	1963912	-	hypothetical protein	conserved hypothetical protein~[S] COG0586 Uncharacterized membrane-associated protein	gene	gene1803	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1809
CH54_181	CH54_181		CH54_181	190826	191710	+	copper resistance D family protein	[P] COG1276 Putative copper export protein	gene	gene180	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_181
CH54_1810	CH54_1810		CH54_1810	1964198	1966570	+	DNA polymerase family B%2C exonuclease domain protein	[L] COG0417 DNA polymerase elongation subunit (family B)	gene	gene1804	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1810
CH54_1811	CH54_1811		CH54_1811	1966845	1969751	+	DEAD/DEAH box helicase family protein	[KL] COG0553 Superfamily II DNA/RNA helicases%2C SNF2 family	gene	gene1805	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1811
CH54_1812	CH54_1812		CH54_1812	1969751	1970404	+	RNA pseudouridylate synthase family protein	[J] COG0564 Pseudouridylate synthases%2C 23S RNA-specific	gene	gene1806	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1812
CH54_1813	CH54_1813		CH54_1813	1970490	1971317	-	dnaJ domain protein	[O] COG1076 DnaJ-domain-containing proteins 1	gene	gene1807	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1813
CH54_1814	CH54_1814		CH54_1814	1971592	1973865	+	organic solvent tolerance family protein	[M] COG1452 Organic solvent tolerance protein OstA	gene	gene1808	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1814
CH54_1815	CH54_1815		CH54_1815	1973933	1975237	+	PPIC-type PPIASE domain protein	[O] COG0760 Parvulin-like peptidyl-prolyl isomerase	gene	gene1809	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1815
CH54_1816	CH54_1816	pdxA	pdxA	1975221	1976216	+	4-hydroxythreonine-4-phosphate dehydrogenase PdxA	pdxA: 4-hydroxythreonine-4-phosphate dehydrogenase PdxA~[H] COG1995 Pyridoxal phosphate biosynthesis protein	gene	gene1810	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1816
CH54_1817	CH54_1817	rsmA	rsmA	1976209	1977027	+	ribosomal RNA small subunit methyltransferase A	ksgA: ribosomal RNA small subunit methyltransferase A~[J] COG0030 Dimethyladenosine transferase (rRNA methylation)	gene	gene1811	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1817
CH54_1818	CH54_1818		CH54_1818	1977041	1977418	+	hypothetical protein	conserved hypothetical protein~[P] COG2967 Uncharacterized protein affecting Mg2+/Co2+ transport	gene	gene1812	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1818
CH54_1819	CH54_1819	apaH	apaH	1977433	1978311	+	Diadenosine tetraphosphatase	apaH: bis~[T] COG0639 Diadenosine tetraphosphatase and related serine/threonine protein phosphatases%3B bis	gene	gene1813	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1819
CH54_182	CH54_182		CH54_182	191807	192148	+	hypothetical protein	conserved hypothetical protein	gene	gene181	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_182
CH54_1820	CH54_1820		CH54_1820	1978337	1978525	-	hypothetical protein		gene	gene1814	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1820
CH54_1821	CH54_1821		CH54_1821	1978703	1979173	-	hypothetical protein	conserved hypothetical protein	gene	gene1815	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1821
CH54_1822	CH54_1822		CH54_1822	1979390	1979872	-	dihydrofolate reductase family protein	[H] COG0262 Dihydrofolate reductase	gene	gene1816	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1822
CH54_1823	CH54_1823		CH54_1823	1980023	1980487	-	hypothetical protein	conserved hypothetical protein~[S] COG3610 Uncharacterized conserved protein	gene	gene1817	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1823
CH54_1824	CH54_1824		CH54_1824	1980487	1981284	-	hypothetical protein	conserved hypothetical protein~[S] COG2966 Uncharacterized conserved protein	gene	gene1818	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1824
CH54_1825	CH54_1825		CH54_1825	1981323	1982000	+	lysE type translocator family protein	[E] COG1280 Putative threonine efflux protein	gene	gene1819	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1825
CH54_1826	CH54_1826	carB	carB	1982215	1985448	-	carbamoyl-phosphate synthase%2C large subunit	CPSaseII_lrg: carbamoyl-phosphate synthase%2C large subunit~[EF] COG0458 Carbamoylphosphate synthase large subunit (split gene in MJ)	gene	gene1820	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1826
CH54_1827	CH54_1827	carA	carA	1985465	1986628	-	carbamoyl-phosphate synthase%2C small subunit	CPSaseIIsmall: carbamoyl-phosphate synthase%2C small subunit~[EF] COG0505 Carbamoylphosphate synthase small subunit	gene	gene1821	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1827
CH54_1828	CH54_1828	dapB	dapB	1987101	1987922	-	4-hydroxy-tetrahydrodipicolinate reductase	dapB: 4-hydroxy-tetrahydrodipicolinate reductase~[E] COG0289 Dihydrodipicolinate reductase	gene	gene1822	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1828
CH54_1829	CH54_1829	ispH	ispH	1988195	1989148	-	4-hydroxy-3-methylbut-2-enyl diphosphate reductase	ispH_lytB: 4-hydroxy-3-methylbut-2-enyl diphosphate reductase~[IM] COG0761 Penicillin tolerance protein	gene	gene1823	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1829
CH54_183	CH54_183		CH54_183	192629	193301	+		terminase small subunit	pseudogene	gene182	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_183
CH54_1830	CH54_1830		CH54_1830	1989129	1989629	-	FKBP-type peptidyl-prolyl cis-trans isomerase family protein	[O] COG1047 FKBP-type peptidyl-prolyl cis-trans isomerases 2	gene	gene1824	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1830
CH54_1831	CH54_1831	lspA	lspA	1989631	1990140	-	signal peptidase II	lspA: signal peptidase II~[MU] COG0597 Lipoprotein signal peptidase	gene	gene1825	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1831
CH54_1832	CH54_1832	ileS	ileS	1990140	1992956	-	isoleucine--tRNA ligase	ileS: isoleucine--tRNA ligase~[J] COG0060 Isoleucyl-tRNA synthetase	gene	gene1826	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1832
CH54_1833	CH54_1833	ribF	ribF	1992988	1993926	-	riboflavin biosynthesis protein RibF	ribF: riboflavin biosynthesis protein RibF~[H] COG0196 FAD synthase	gene	gene1827	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1833
CH54_1834	CH54_1834	rpsT	rpsT	1994340	1994603	+	ribosomal protein S20	S20: ribosomal protein S20~[J] COG0268 Ribosomal protein S20	gene	gene1828	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1834
CH54_1835	CH54_1835		CH54_1835	1994748	1995647	-	bacterial regulatory helix-turn-helix%2C lysR family protein	[K] COG0583 Transcriptional regulator	gene	gene1829	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1835
CH54_1836	CH54_1836	nhaA	nhaA	1995922	1997091	-	Na+/H+ antiporter NhaA	nhaA: Na+/H+ antiporter NhaA~[P] COG3004 Na+/H+ antiporter	gene	gene1830	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1836
CH54_1837	CH54_1837	dnaJ	dnaJ	1997328	1998458	-	chaperone protein DnaJ	dnaJ_bact: chaperone protein DnaJ~[O] COG0484 DnaJ-class molecular chaperone with C-terminal Zn finger domain	gene	gene1831	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1837
CH54_1838	CH54_1838	dnaK	dnaK	1998571	2000481	-	chaperone protein DnaK	prok_dnaK: chaperone protein DnaK~[O] COG0443 Molecular chaperone	gene	gene1832	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1838
CH54_1839	CH54_1839		CH54_1839	2000856	2001449	+	GPR1/FUN34/yaaH family protein	[S] COG1584 Predicted membrane protein	gene	gene1833	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1839
CH54_1840	CH54_1840		CH54_1840	2001674	2004126	+		beta/Gamma crystallin family protein	pseudogene	gene1834	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1840
CH54_1842	CH54_1842		CH54_1842	2004206	2005573	-	sugar (and other) transporter family protein	[GEPR] COG0477 Permeases of the major facilitator superfamily	gene	gene1835	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1842
CH54_1843	CH54_1843		CH54_1843	2005702	2006289	-	molybdenum cofactor synthesis domain protein	molyb_syn: molybdenum cofactor synthesis domain protein~[H] COG0521 Molybdopterin biosynthesis enzymes	gene	gene1836	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1843
CH54_1844	CH54_1844	tal	tal	2006571	2007524	-	transaldolase	talAB: transaldolase~[G] COG0176 Transaldolase	gene	gene1837	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1844
CH54_1845	CH54_1845		CH54_1845	2007951	2008727	+	hypothetical protein	conserved hypothetical protein~[S] COG3022 Uncharacterized protein conserved in bacteria	gene	gene1838	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1845
CH54_1846	CH54_1846	thrC	thrC	2008783	2010072	-	threonine synthase	thrC: threonine synthase~[E] COG0498 Threonine synthase	gene	gene1839	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1846
CH54_1847	CH54_1847	thrB	thrB	2010076	2011005	-	homoserine kinase	thrB: homoserine kinase~[E] COG0083 Homoserine kinase	gene	gene1840	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1847
CH54_1848	CH54_1848		CH54_1848	2011008	2013467	-	aspartate kinase domain protein	asp_kinase: aspartate kinase domain protein~[E] COG0460 Homoserine dehydrogenase	gene	gene1841	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1848
CH54_1849	CH54_1849		CH54_1849	2014618	2015334	+	hypothetical protein	transcriptional regulatory%2C C terminal family protein~[TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain	gene	gene1842	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1849
CH54_185	CH54_185		CH54_185	193312	193596	-	addiction module toxin%2C RelE/StbE family protein	relE_StbE: addiction module toxin%2C RelE/StbE family protein~[JD] COG2026 Cytotoxic translational repressor of toxin-antitoxin stability system	gene	gene183	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_185
CH54_1850	CH54_1850		CH54_1850	2015590	2016069	-	creA family protein	[S] COG3045 Uncharacterized protein conserved in bacteria	gene	gene1843	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1850
CH54_1851	CH54_1851		CH54_1851	2017158	2017805	-	histidine phosphatase super family protein	[G] COG0406 Fructose-2%2C6-bisphosphatase	gene	gene1845	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1851
CH54_1852	CH54_1852		CH54_1852	2016295	2017161	+	helix-turn-helix domain protein	[K] COG2207 AraC-type DNA-binding domain-containing proteins	gene	gene1844	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1852
CH54_1853	CH54_1853		CH54_1853	2017869	2018396	+	hypothetical protein	conserved hypothetical protein~[S] COG1986 Uncharacterized conserved protein	gene	gene1846	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1853
CH54_1854	CH54_1854	trpR	trpR	2018445	2018771	-	trp operon repressor	trpR: trp operon repressor~[K] COG2973 Trp operon repressor	gene	gene1847	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1854
CH54_1855	CH54_1855		CH54_1855	2019019	2020938	-	soluble lytic murein transglycosylase L domain protein	[M] COG0741 Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains)	gene	gene1848	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1855
CH54_1856	CH54_1856		CH54_1856	2021462	2024167	+	HAD ATPase%2C P-type%2C IC family protein	ATPase_P-type: HAD ATPase%2C P-type%2C IC family protein~[P] COG0474 Cation transport ATPase	gene	gene1849	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1856
CH54_1857	CH54_1857	ccmA	ccmA	2024463	2026130	+	heme ABC exporter%2C ATP-binding protein CcmA	ccmA: heme ABC exporter%2C ATP-binding protein CcmA~[R] COG0488 ATPase components of ABC transporters with duplicated ATPase domains	gene	gene1850	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1857
CH54_1858	CH54_1858		CH54_1858	2026203	2027111	-	bacterial regulatory helix-turn-helix%2C lysR family protein	[K] COG0583 Transcriptional regulator	gene	gene1851	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1858
CH54_1859	CH54_1859		CH54_1859	2027238	2028239	+	zinc-binding alcohol dehydrogenase family protein	adh_fam_1: zinc-binding alcohol dehydrogenase family protein~[CR] COG0604 NADPH:quinone reductase and related Zn-dependent oxidoreductases	gene	gene1852	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1859
CH54_186	CH54_186		CH54_186	193586	193825	-	addiction module antitoxin%2C RelB/DinJ family protein	relB_DinJ: addiction module antitoxin%2C RelB/DinJ family protein~[L] COG3077 DNA-damage-inducible protein J	gene	gene184	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_186
CH54_1860	CH54_1860		CH54_1860	2028245	2029522	-	nicotinamide-nucleotide adenylyltransferase	nadR_NMN_Atrans: nicotinamide-nucleotide adenylyltransferase~[H] COG3172 Predicted ATPase/kinase involved in NAD metabolism	gene	gene1853	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1860
CH54_1861	CH54_1861		CH54_1861	2030523	2030939	-	hypothetical protein	conserved hypothetical protein	gene	gene1854	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1861
CH54_1862	CH54_1862	radA	radA	2030977	2032359	-	DNA repair protein RadA	sms: DNA repair protein RadA~[O] COG1066 Predicted ATP-dependent serine protease	gene	gene1855	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1862
CH54_1863	CH54_1863	serB	serB	2032393	2033418	-	phosphoserine phosphatase SerB	serB: phosphoserine phosphatase SerB~[E] COG0560 Phosphoserine phosphatase	gene	gene1856	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1863
CH54_1864	CH54_1864		CH54_1864	2033482	2034159	+	bacterial virulence factor hemolysin family protein	[R] COG3726 Uncharacterized membrane protein affecting hemolysin expression	gene	gene1857	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1864
CH54_1865	CH54_1865	deoD	deoD	2034209	2034928	-	purine nucleoside phosphorylase	deoD: purine nucleoside phosphorylase~[F] COG0813 Purine-nucleoside phosphorylase	gene	gene1858	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1865
CH54_1866	CH54_1866	deoB	deoB	2034989	2036212	-	phosphopentomutase	deoB: phosphopentomutase~[G] COG1015 Phosphopentomutase	gene	gene1859	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1866
CH54_1867	CH54_1867	deoA	deoA	2036265	2037632	-	thymidine phosphorylase	T_phosphoryl: thymidine phosphorylase~[F] COG0213 Thymidine phosphorylase	gene	gene1860	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1867
CH54_1868	CH54_1868	deoC	deoC	2037675	2038472	-	deoxyribose-phosphate aldolase	deoC: deoxyribose-phosphate aldolase~[F] COG0274 Deoxyribose-phosphate aldolase	gene	gene1861	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1868
CH54_1869	CH54_1869		CH54_1869	2038975	2040246	-	nucleoside transporter%2C NupC family protein	nupC: nucleoside transporter%2C NupC family protein~[F] COG1972 Nucleoside permease	gene	gene1862	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1869
CH54_187	CH54_187		CH54_187	193952	194122	+	hypothetical protein	conserved hypothetical protein	gene	gene185	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_187
CH54_1870	CH54_1870		CH54_1870	2040450	2041304	-	tatD related DNase family protein	[L] COG0084 Mg-dependent DNase	gene	gene1863	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1870
CH54_1871	CH54_1871		CH54_1871	2041304	2042554	-	patatin-like phospholipase family protein	[R] COG4667 Predicted esterase of the alpha-beta hydrolase superfamily	gene	gene1864	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1871
CH54_1872	CH54_1872		CH54_1872	2042629	2042790	-	hypothetical protein	conserved hypothetical protein~[S] COG5487 Small integral membrane protein	gene	gene1865	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1872
CH54_1873	CH54_1873		CH54_1873	2043004	2043618	-	BON domain protein	[R] COG2823 Predicted periplasmic or secreted lipoprotein	gene	gene1866	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1873
CH54_1874	CH54_1874	prfC	prfC	2043930	2045564	-	peptide chain release factor 3	prfC: peptide chain release factor 3~[J] COG4108 Peptide chain release factor RF-3	gene	gene1867	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1874
CH54_1875	CH54_1875	rimI	rimI	2045769	2046212	-	ribosomal-protein-alanine acetyltransferase	rimI: ribosomal-protein-alanine acetyltransferase~[R] COG0456 Acetyltransferases	gene	gene1868	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1875
CH54_1876	CH54_1876		CH54_1876	2046157	2046594	-	DNA polymerase III psi subunit	[L] COG3050 DNA polymerase III%2C psi subunit	gene	gene1869	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1876
CH54_1877	CH54_1877		CH54_1877	2046707	2047750	+	methyltransferase small domain protein	[J] COG2813 16S RNA G1207 methylase RsmC	gene	gene1870	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1877
CH54_1878	CH54_1878		CH54_1878	2047769	2048761	-	aldo/keto reductase family protein	[C] COG0667 Predicted oxidoreductases (related to aryl-alcohol dehydrogenases)	gene	gene1871	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1878
CH54_1879	CH54_1879		CH54_1879	2048878	2049804	+	bacterial regulatory helix-turn-helix%2C lysR family protein	[K] COG0583 Transcriptional regulator	gene	gene1872	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1879
CH54_188	CH54_188		CH54_188	194405	195586	-	beta-lactamase family protein	[V] COG1680 Beta-lactamase class C and other penicillin binding proteins	gene	gene186	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_188
CH54_1880	CH54_1880		CH54_1880	2049954	2050040	+	tRNA-Leu		tRNA	gene1873	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1880
CH54_1881	CH54_1881		CH54_1881	2050227	2050313	+	tRNA-Leu		tRNA	gene1874	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1881
CH54_1882	CH54_1882		CH54_1882	2050399	2050713	-	hypothetical protein	conserved hypothetical protein	gene	gene1875	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1882
CH54_1883	CH54_1883		CH54_1883	2051027	2052109	+	diguanylate cyclase domain protein	GGDEF: diguanylate cyclase domain protein~[T] COG2199 FOG: GGDEF domain	gene	gene1876	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1883
CH54_1884	CH54_1884		CH54_1884	2053223	2055142	+	PAS fold family protein	[QK] COG3284 Transcriptional activator of acetoin/glycerol metabolism	gene	gene1877	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1884
CH54_1885	CH54_1885		CH54_1885	2055643	2056509	+	2OG-Fe dioxygenase family protein	[S] COG4340 Uncharacterized protein conserved in bacteria	gene	gene1878	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1885
CH54_1886	CH54_1886		CH54_1886	2056549	2057712	+	major Facilitator Superfamily protein	[GEPR] COG0477 Permeases of the major facilitator superfamily	gene	gene1879	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1886
CH54_1887	CH54_1887		CH54_1887	2057728	2059170	+	glycosyl transferases group 1 family protein		gene	gene1880	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1887
CH54_1888	CH54_1888		CH54_1888	2059196	2060698	+	GMC oxidoreductase family protein		gene	gene1881	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1888
CH54_1889	CH54_1889		CH54_1889	2060753	2062459	+	carbamoyltransferase family protein	[O] COG2192 Predicted carbamoyl transferase%2C NodU family	gene	gene1882	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1889
CH54_189	CH54_189		CH54_189	195837	196709	+	pseudouridine synthase family protein	[J] COG1187 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases	gene	gene187	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_189
CH54_1890	CH54_1890		CH54_1890	2062513	2063868	+	glycosyl transferases group 1 family protein	[M] COG0438 Glycosyltransferase	gene	gene1883	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1890
CH54_1891	CH54_1891		CH54_1891	2063912	2065345	-	dihydroxyacetone kinase%2C phosphotransfer subunit	dha_pts: dihydroxyacetone kinase%2C phosphotransfer subunit~[S] COG3412 Uncharacterized protein conserved in bacteria	gene	gene1884	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1891
CH54_1892	CH54_1892	dhaL	dhaL	2065380	2066012	-	dihydroxyacetone kinase%2C L subunit	dha_L_ycgS: dihydroxyacetone kinase%2C L subunit~[G] COG2376 Dihydroxyacetone kinase	gene	gene1885	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1892
CH54_1893	CH54_1893	dhaK	dhaK	2066030	2067097	-	dihydroxyacetone kinase%2C DhaK subunit	dhaK1: dihydroxyacetone kinase%2C DhaK subunit~[G] COG2376 Dihydroxyacetone kinase	gene	gene1886	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1893
CH54_1894	CH54_1894		CH54_1894	2067200	2068294	-	iron-containing alcohol dehydrogenase family protein	[C] COG0371 Glycerol dehydrogenase and related enzymes	gene	gene1887	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1894
CH54_1895	CH54_1895		CH54_1895	2068632	2071718	-	acrB/AcrD/AcrF family protein	[V] COG0841 Cation/multidrug efflux pump	gene	gene1888	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1895
CH54_1896	CH54_1896		CH54_1896	2071718	2072800	-	efflux transporter%2C RND family%2C MFP subunit	RND_mfp: efflux transporter%2C RND family%2C MFP subunit~[M] COG0845 Membrane-fusion protein	gene	gene1889	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1896
CH54_1897	CH54_1897	arcA	arcA	2073258	2074541	-	arginine deiminase	arcA: arginine deiminase~[E] COG2235 Arginine deiminase	gene	gene1890	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1897
CH54_1898	CH54_1898		CH54_1898	2074557	2076065	-	transporter%2C basic amino acid/polyamine antiporter family protein	2A0302: transporter%2C basic amino acid/polyamine antiporter family protein~[E] COG0531 Amino acid transporters	gene	gene1891	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1898
CH54_1899	CH54_1899		CH54_1899	2077245	2078489	-	O-Antigen ligase family protein	[M] COG3307 Lipid A core - O-antigen ligase and related enzymes	gene	gene1892	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1899
CH54_19	CH54_19	mgsA	mgsA	20218	20676	-	methylglyoxal synthase	MGSA: methylglyoxal synthase~[G] COG1803 Methylglyoxal synthase	gene	gene18	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_19
CH54_190	CH54_190	gltS	gltS	196829	198034	-	sodium/glutamate symporter	gltS: sodium/glutamate symporter~[E] COG0786 Na+/glutamate symporter	gene	gene188	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_190
CH54_1900	CH54_1900	rfaQ	rfaQ	2078606	2079772	-	putative lipopolysaccharide heptosyltransferase III	heptsyl_trn_III: putative lipopolysaccharide heptosyltransferase III~[M] COG0859 ADP-heptose:LPS heptosyltransferase	gene	gene1893	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1900
CH54_1901	CH54_1901		CH54_1901	2080095	2081684	-	hypothetical protein	FGGY family of carbohydrate kinase%2C N-terminal domain protein~[G] COG1070 Sugar (pentulose and hexulose) kinases	gene	gene1894	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1901
CH54_1902	CH54_1902		CH54_1902	2081826	2082803	-	putative sugar-binding domain protein	[K] COG2390 Transcriptional regulator%2C contains sigma factor-related N-terminal domain	gene	gene1895	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1902
CH54_1903	CH54_1903	ccmA	ccmA	2083043	2084620	+	heme ABC exporter%2C ATP-binding protein CcmA	ccmA: heme ABC exporter%2C ATP-binding protein CcmA~[G] COG1129 ABC-type sugar transport system%2C ATPase component	gene	gene1896	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1903
CH54_1904	CH54_1904		CH54_1904	2084614	2085678	+	branched-chain amino acid transport system / permease component family protein	[G] COG1172 Ribose/xylose/arabinose/galactoside ABC-type transport systems%2C permease components	gene	gene1897	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1904
CH54_1905	CH54_1905		CH54_1905	2085675	2086670	+	branched-chain amino acid transport system / permease component family protein	[G] COG1172 Ribose/xylose/arabinose/galactoside ABC-type transport systems%2C permease components	gene	gene1898	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1905
CH54_1906	CH54_1906		CH54_1906	2086724	2087758	+	periplasmic binding domain protein	[G] COG1879 ABC-type sugar transport system%2C periplasmic component	gene	gene1899	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1906
CH54_1907	CH54_1907		CH54_1907	2087815	2088690	+	deoC/LacD aldolase family protein	[G] COG1830 DhnA-type fructose-1%2C6-bisphosphate aldolase and related enzymes	gene	gene1900	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1907
CH54_1908	CH54_1908		CH54_1908	2088772	2089062	+	antibiotic biosynthesis monooxygenase family protein	[S] COG1359 Uncharacterized conserved protein	gene	gene1901	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1908
CH54_1909	CH54_1909		CH54_1909	2089344	2089826	+	hypothetical protein	conserved hypothetical protein	gene	gene1902	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1909
CH54_191	CH54_191		CH54_191	198031	198783	-	integrase core domain protein	[L] COG2801 Transposase and inactivated derivatives	gene	gene189	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_191
CH54_1910	CH54_1910		CH54_1910	2089952	2090716	-	HNH endonuclease family protein	[V] COG3440 Predicted restriction endonuclease	gene	gene1903	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1910
CH54_1911	CH54_1911		CH54_1911	2090981	2092288	-	permease for cytosine/purine%2C uracil%2C thiamine%2C allantoin family protein	[F] COG1457 Purine-cytosine permease and related proteins	gene	gene1904	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1911
CH54_1912	CH54_1912		CH54_1912	2092918	2094225	-	permease for cytosine/purine%2C uracil%2C thiamine%2C allantoin family protein	[F] COG1457 Purine-cytosine permease and related proteins	gene	gene1905	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1912
CH54_1913	CH54_1913		CH54_1913	2094278	2094967	-	bacterial regulatory s%2C luxR family protein	[TK] COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain	gene	gene1906	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1913
CH54_1914	CH54_1914		CH54_1914	2094993	2095403	-	acetyltransferase domain protein	[KR] COG0454 Histone acetyltransferase HPA2 and related acetyltransferases	gene	gene1907	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1914
CH54_1915	CH54_1915		CH54_1915	2096228	2097274	-	parB-like nuclease family protein	[S] COG4318 Uncharacterized protein conserved in bacteria	gene	gene1908	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1915
CH54_1916	CH54_1916		CH54_1916	2097700	2099388	+	surface antigen family protein	[U] COG2831 Hemolysin activation/secretion protein	gene	gene1909	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1916
CH54_1917	CH54_1917		CH54_1917	2099425	2108739	+	hypothetical protein	adhes_NPXG: filamentous hemagglutinin family N-terminal domain protein~[U] COG3210 Large exoproteins involved in heme utilization or adhesion	gene	gene1910	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1917
CH54_1918	CH54_1918		CH54_1918	2108739	2109050	+	immunity 26 family protein		gene	gene1911	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1918
CH54_1919	CH54_1919		CH54_1919	2109087	2109206	+	hypothetical protein		gene	gene1912	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1919
CH54_192	CH54_192		CH54_192	198894	199205	-	transposase family protein	[L] COG2963 Transposase and inactivated derivatives	gene	gene190	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_192
CH54_1920	CH54_1920		CH54_1920	2109272	2109925	+	hemagluttinin repeat family protein	[U] COG3210 Large exoproteins involved in heme utilization or adhesion	gene	gene1913	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1920
CH54_1921	CH54_1921		CH54_1921	2110077	2113325	-	hypothetical protein	type I restriction enzyme R N terminus family protein~[V] COG0610 Type I site-specific restriction-modification system%2C R (restriction) subunit and related helicases	gene	gene1914	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1921
CH54_1922	CH54_1922		CH54_1922	2113471	2113782	+	transposase family protein	[L] COG2963 Transposase and inactivated derivatives	gene	gene1915	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1922
CH54_1923	CH54_1923		CH54_1923	2113893	2114645	+	integrase core domain protein	[L] COG2801 Transposase and inactivated derivatives	gene	gene1916	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1923
CH54_1924	CH54_1924		CH54_1924	2114649	2114771	-	hypothetical protein		gene	gene1917	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1924
CH54_1925	CH54_1925		CH54_1925	2114771	2117134	-	N-6 DNA Methylase family protein	[V] COG0286 Type I restriction-modification system methyltransferase subunit	gene	gene1918	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1925
CH54_1926	CH54_1926		CH54_1926	2117666	2117884	-	hypothetical protein	conserved hypothetical protein~[L] COG0582 Integrase	gene	gene1919	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1926
CH54_1927	CH54_1927		CH54_1927	2118368	2118452	-	tRNA-Leu		tRNA	gene1920	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1927
CH54_1929	CH54_1929	lptG	lptG	2118554	2119624	-	LPS export ABC transporter permease LptG	lptG_lptG: LPS export ABC transporter permease LptG~[R] COG0795 Predicted permeases	gene	gene1921	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1929
CH54_193	CH54_193		CH54_193	199640	199834	-	hypothetical protein		gene	gene191	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_193
CH54_1930	CH54_1930	lptF	lptF	2119624	2120718	-	LPS export ABC transporter permease LptF	lptF_YjgP: LPS export ABC transporter permease LptF~[R] COG0795 Predicted permeases	gene	gene1922	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1930
CH54_1931	CH54_1931		CH54_1931	2120998	2122509	+	hypothetical protein	cytosol aminopeptidase family%2C N-terminal domain protein~[E] COG0260 Leucyl aminopeptidase	gene	gene1923	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1931
CH54_1932	CH54_1932		CH54_1932	2122669	2123118	+	DNA polymerase III chi subunit%2C HolC family protein	[L] COG2927 DNA polymerase III%2C chi subunit	gene	gene1924	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1932
CH54_1933	CH54_1933	valS	valS	2123131	2126028	+	valine--tRNA ligase	valS: valine--tRNA ligase~[J] COG0525 Valyl-tRNA synthetase	gene	gene1925	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1933
CH54_1934	CH54_1934		CH54_1934	2126211	2126714	+	acetyltransferase domain protein	[KR] COG0454 Histone acetyltransferase HPA2 and related acetyltransferases	gene	gene1926	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1934
CH54_1935	CH54_1935		CH54_1935	2126895	2127326	-	regulator of ribonuclease activity B family protein	[S] COG3076 Uncharacterized protein conserved in bacteria	gene	gene1927	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1935
CH54_1936	CH54_1936	argF	argF	2127488	2128504	+	ornithine carbamoyltransferase	orni_carb_tr: ornithine carbamoyltransferase~[E] COG0078 Ornithine carbamoyltransferase	gene	gene1928	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1936
CH54_1937	CH54_1937		CH54_1937	2128679	2129137	-	yhcH/YjgK/YiaL family protein	[G] COG2731 Beta-galactosidase%2C beta subunit	gene	gene1929	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1937
CH54_1938	CH54_1938		CH54_1938	2129462	2131030	+	bacterial extracellular solute-binding s%2C 5 Middle family protein	[E] COG0747 ABC-type dipeptide transport system%2C periplasmic component	gene	gene1930	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1938
CH54_1939	CH54_1939		CH54_1939	2131106	2132155	+	binding--dependent transport system inner membrane component family protein	[EP] COG0601 ABC-type dipeptide/oligopeptide/nickel transport systems%2C permease components	gene	gene1931	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1939
CH54_194	CH54_194		CH54_194	199940	200785	-	eamA-like transporter family protein	[GER] COG0697 Permeases of the drug/metabolite transporter (DMT) superfamily	gene	gene192	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_194
CH54_1940	CH54_1940		CH54_1940	2132157	2132990	+	binding--dependent transport system inner membrane component family protein	[EP] COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems%2C permease components	gene	gene1932	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1940
CH54_1941	CH54_1941		CH54_1941	2132983	2133861	+	ABC transporter family protein	[EP] COG0444 ABC-type dipeptide/oligopeptide/nickel transport system%2C ATPase component	gene	gene1933	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1941
CH54_1942	CH54_1942		CH54_1942	2133848	2134564	+	ABC transporter family protein	[EP] COG1124 ABC-type dipeptide/oligopeptide/nickel transport system%2C ATPase component	gene	gene1934	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1942
CH54_1943	CH54_1943	nrdD	nrdD	2134955	2137093	+	anaerobic ribonucleoside-triphosphate reductase	nrdD: anaerobic ribonucleoside-triphosphate reductase~[F] COG1328 Oxygen-sensitive ribonucleoside-triphosphate reductase	gene	gene1935	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1943
CH54_1944	CH54_1944		CH54_1944	2137252	2137566	+	4Fe-4S single cluster domain protein	[O] COG0602 Organic radical activating enzymes	gene	gene1936	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1944
CH54_1945	CH54_1945	phnF	phnF	2137881	2138606	+	phosphonate metabolism transcriptional regulator PhnF	C_P_lyase_phnF: phosphonate metabolism transcriptional regulator PhnF~[K] COG2188 Transcriptional regulators	gene	gene1937	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1945
CH54_1946	CH54_1946	phnG	phnG	2138607	2139083	+	phosphonate C-P lyase system protein PhnG	phnG_redo: phosphonate C-P lyase system protein PhnG~[P] COG3624 Uncharacterized enzyme of phosphonate metabolism	gene	gene1938	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1946
CH54_1947	CH54_1947	phnH	phnH	2139083	2139664	+	phosphonate C-P lyase system protein PhnH	phnH_redo: phosphonate C-P lyase system protein PhnH~[P] COG3625 Uncharacterized enzyme of phosphonate metabolism	gene	gene1939	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1947
CH54_1948	CH54_1948		CH54_1948	2139664	2140803	+	bacterial phosphonate metabolism family protein	[P] COG3626 Uncharacterized enzyme of phosphonate metabolism	gene	gene1940	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1948
CH54_1949	CH54_1949		CH54_1949	2140796	2141662	+	phosphonate metabolism PhnJ family protein	[P] COG3627 Uncharacterized enzyme of phosphonate metabolism	gene	gene1941	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1949
CH54_195	CH54_195		CH54_195	201042	201290	+	hypothetical protein	conserved hypothetical protein	gene	gene193	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_195
CH54_1950	CH54_1950	phnK	phnK	2141659	2142480	+	phosphonate C-P lyase system protein PhnK	CP_lyasePhnK: phosphonate C-P lyase system protein PhnK~[P] COG4107 ABC-type phosphonate transport system%2C ATPase component	gene	gene1942	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1950
CH54_1951	CH54_1951	phnL	phnL	2142494	2143234	+	phosphonate C-P lyase system protein PhnL	CP_lyasePhnL: phosphonate C-P lyase system protein PhnL~[P] COG4778 ABC-type phosphonate transport system%2C ATPase component	gene	gene1943	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1951
CH54_1952	CH54_1952	phnM	phnM	2143231	2144379	+	phosphonate metabolism protein PhnM	phosphono_phnM: phosphonate metabolism protein PhnM~[P] COG3454 Metal-dependent hydrolase involved in phosphonate metabolism	gene	gene1944	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1952
CH54_1953	CH54_1953	phnN	phnN	2144379	2144960	+	phosphonate metabolism protein/1%2C5-bisphosphokinase (PRPP-forming) PhnN	phosphon_PhnN: phosphonate metabolism protein/1%2C5-bisphosphokinase (PRPP-forming) PhnN~[P] COG3709 Uncharacterized component of phosphonate metabolism	gene	gene1945	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1953
CH54_1954	CH54_1954	phnP	phnP	2144951	2145715	+	phosphonate metabolism protein PhnP	phnP: phosphonate metabolism protein PhnP~[R] COG1235 Metal-dependent hydrolases of the beta-lactamase superfamily I	gene	gene1946	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1954
CH54_1955	CH54_1955		CH54_1955	2145830	2146468	-	semialdehyde dehydrogenase%2C NAD binding domain protein	[MG] COG0702 Predicted nucleoside-diphosphate-sugar epimerases	gene	gene1947	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1955
CH54_1956	CH54_1956		CH54_1956	2146692	2147138	-	hypothetical protein	[S] COG3787 Uncharacterized protein conserved in bacteria	gene	gene1948	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1956
CH54_1957	CH54_1957		CH54_1957	2147227	2148372	-	alginate lyase family protein		gene	gene1949	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1957
CH54_1958	CH54_1958		CH54_1958	2148387	2149499	-	ABC transporter family protein	[G] COG3839 ABC-type sugar transport systems%2C ATPase components	gene	gene1950	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1958
CH54_1959	CH54_1959		CH54_1959	2149511	2150350	-	binding--dependent transport system inner membrane component family protein	[G] COG0395 ABC-type sugar transport system%2C permease component	gene	gene1951	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1959
CH54_196	CH54_196		CH54_196	201397	202446	+	mechanosensitive ion channel family protein	[M] COG0668 Small-conductance mechanosensitive channel	gene	gene194	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_196
CH54_1960	CH54_1960		CH54_1960	2150370	2151254	-	binding--dependent transport system inner membrane component family protein	[G] COG1175 ABC-type sugar transport systems%2C permease components	gene	gene1952	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1960
CH54_1961	CH54_1961		CH54_1961	2151262	2152575	-	bacterial extracellular solute-binding family protein	[G] COG1653 ABC-type sugar transport system%2C periplasmic component	gene	gene1953	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1961
CH54_1962	CH54_1962		CH54_1962	2153142	2154374	+	alginate lyase family protein		gene	gene1954	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1962
CH54_1963	CH54_1963		CH54_1963	2154397	2156445	+	alginate lyase family protein		gene	gene1955	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1963
CH54_1964	CH54_1964		CH54_1964	2157590	2159755	+	beta-eliminating lyase family protein	[E] COG1982 Arginine/lysine/ornithine decarboxylases	gene	gene1956	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1964
CH54_1965	CH54_1965	potE	potE	2159814	2161130	+	putrescine-ornithine antiporter	antiport_PotE: putrescine-ornithine antiporter~[E] COG0531 Amino acid transporters	gene	gene1957	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1965
CH54_1966	CH54_1966		CH54_1966	2161546	2162049	-	acetyltransferase family protein	[R] COG3153 Predicted acetyltransferase	gene	gene1959	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1966
CH54_1967	CH54_1967		CH54_1967	2161230	2161559	+	GIY-YIG catalytic domain protein	[L] COG2827 Predicted endonuclease containing a URI domain	gene	gene1958	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1967
CH54_1968	CH54_1968		CH54_1968	2162043	2162564	-	SCP-2 sterol transfer family protein	[I] COG3154 Putative lipid carrier protein	gene	gene1960	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1968
CH54_1969	CH54_1969		CH54_1969	2162765	2163760	+	peptidase U32 family protein	[O] COG0826 Collagenase and related proteases	gene	gene1961	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1969
CH54_197	CH54_197		CH54_197	202854	204134	+	patatin-like phospholipase family protein		gene	gene195	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_197
CH54_1970	CH54_1970		CH54_1970	2163772	2164650	+	peptidase U32 family protein	[O] COG0826 Collagenase and related proteases	gene	gene1962	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1970
CH54_1971	CH54_1971		CH54_1971	2164901	2165956	+	luciferase oxidoreductase%2C group 1 family protein	oxido_grp_1: luciferase oxidoreductase%2C group 1 family protein~[C] COG2141 Coenzyme F420-dependent N5%2CN10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases	gene	gene1963	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1971
CH54_1972	CH54_1972		CH54_1972	2166039	2168018	-	DEAD/DEAH box helicase family protein	[LKJ] COG0513 Superfamily II DNA and RNA helicases	gene	gene1964	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1972
CH54_1973	CH54_1973		CH54_1973	2168205	2169089	-	tetratricopeptide repeat family protein	[R] COG4785 Lipoprotein NlpI%2C contains TPR repeats	gene	gene1965	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1973
CH54_1974	CH54_1974	pnp	pnp	2169212	2171332	-	polyribonucleotide nucleotidyltransferase	polynuc_phos: polyribonucleotide nucleotidyltransferase~[J] COG1185 Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase)	gene	gene1966	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1974
CH54_1975	CH54_1975	rpsO	rpsO	2171594	2171863	-	ribosomal protein S15	S15_bact: ribosomal protein S15~[J] COG0184 Ribosomal protein S15P/S13E	gene	gene1967	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1975
CH54_1976	CH54_1976	truB	truB	2171992	2172936	-	tRNA pseudouridine(55) synthase	truB: tRNA pseudouridine(55) synthase~[J] COG0130 Pseudouridine synthase	gene	gene1968	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1976
CH54_1977	CH54_1977	rbfA	rbfA	2172936	2173346	-	ribosome-binding factor A	rbfA: ribosome-binding factor A~[J] COG0858 Ribosome-binding factor A	gene	gene1969	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1977
CH54_1978	CH54_1978	infB	infB	2173412	2176090	-	translation initiation factor IF-2	IF-2: translation initiation factor IF-2~[J] COG0532 Translation initiation factor 2 (IF-2%3B GTPase)	gene	gene1970	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1978
CH54_1979	CH54_1979	nusA	nusA	2176115	2177602	-	Transcription elongation factor	nusA: transcription termination factor NusA~[K] COG0195 Transcription elongation factor	gene	gene1971	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1979
CH54_198	CH54_198		CH54_198	204156	204248	-	putative membrane protein		gene	gene196	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_198
CH54_1980	CH54_1980		CH54_1980	2177624	2178082	-	hypothetical protein	conserved hypothetical protein~[S] COG0779 Uncharacterized protein conserved in bacteria	gene	gene1972	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1980
CH54_1981	CH54_1981		CH54_1981	2178292	2178368	-	tRNA-Met		tRNA	gene1973	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1981
CH54_1982	CH54_1982		CH54_1982	2178429	2178515	-	tRNA-Leu		tRNA	gene1974	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1982
CH54_1983	CH54_1983	secG	secG	2178607	2178942	-	preprotein translocase%2C SecG subunit	secG: preprotein translocase%2C SecG subunit~[U] COG1314 Preprotein translocase subunit SecG	gene	gene1975	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1983
CH54_1984	CH54_1984	glmM	glmM	2179166	2180506	-	phosphoglucosamine mutase	glmM: phosphoglucosamine mutase~[G] COG1109 Phosphomannomutase	gene	gene1976	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1984
CH54_1985	CH54_1985	folP	folP	2180516	2181349	-	dihydropteroate synthase	DHPS: dihydropteroate synthase~[H] COG0294 Dihydropteroate synthase and related enzymes	gene	gene1977	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1985
CH54_1986	CH54_1986	hflB	hflB	2181433	2183376	-	ATP-dependent metallopeptidase HflB family protein	ftsH_fam: ATP-dependent metallopeptidase HflB family protein~[O] COG0465 ATP-dependent Zn proteases	gene	gene1978	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1986
CH54_1987	CH54_1987	rrmJ	rrmJ	2183424	2184053	-	ribosomal RNA large subunit methyltransferase J	rrmJ: ribosomal RNA large subunit methyltransferase J~[J] COG0293 23S rRNA methylase	gene	gene1979	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1987
CH54_1988	CH54_1988		CH54_1988	2184200	2184493	+	CRS1 / YhbY domain protein	[J] COG1534 Predicted RNA-binding protein containing KH domain%2C possibly ribosomal protein	gene	gene1980	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1988
CH54_1989	CH54_1989	greA	greA	2184622	2185098	-	transcription elongation factor GreA domain protein	greA: transcription elongation factor GreA domain protein~[K] COG0782 Transcription elongation factor	gene	gene1981	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1989
CH54_199	CH54_199		CH54_199	204816	204950	-	hypothetical protein	conserved hypothetical protein	gene	gene198	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_199
CH54_1990	CH54_1990	dacB	dacB	2185358	2186806	+	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	PBP4: D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase~[M] COG2027 D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 4)	gene	gene1982	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1990
CH54_1991	CH54_1991		CH54_1991	2186833	2187492	+	hypothetical protein	transcriptional regulatory%2C C terminal family protein~[TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain	gene	gene1983	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1991
CH54_1992	CH54_1992		CH54_1992	2187489	2188553	+	HAMP domain protein	[T] COG0642 Signal transduction histidine kinase	gene	gene1984	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1992
CH54_1993	CH54_1993	cgtA	cgtA	2188725	2189894	-	Obg family GTPase CgtA	obg_CgtA: Obg family GTPase CgtA~[R] COG0536 Predicted GTPase	gene	gene1985	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1993
CH54_1994	CH54_1994		CH54_1994	2189926	2190885	-	eamA-like transporter family protein	[GER] COG0697 Permeases of the drug/metabolite transporter (DMT) superfamily	gene	gene1986	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1994
CH54_1995	CH54_1995	rpmA	rpmA	2190972	2191229	-	ribosomal protein L27	L27: ribosomal protein L27~[J] COG0211 Ribosomal protein L27	gene	gene1987	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1995
CH54_1996	CH54_1996	rplU	rplU	2191249	2191560	-	ribosomal protein L21	L21: ribosomal protein L21~[J] COG0261 Ribosomal protein L21	gene	gene1988	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1996
CH54_1997	CH54_1997		CH54_1997	2191820	2192791	+	polyprenyl synthetase family protein	[H] COG0142 Geranylgeranyl pyrophosphate synthase	gene	gene1989	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1997
CH54_1998	CH54_1998		CH54_1998	2192947	2193303	-	mu DNA-binding domain protein	[K] COG2932 Predicted transcriptional regulator	gene	gene1990	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1998
CH54_1999	CH54_1999		CH54_1999	2193488	2193763	+	winged helix-turn-helix DNA-binding family protein	[K] COG3423 Predicted transcriptional regulator	gene	gene1991	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_1999
CH54_2	CH54_2	ccmA	ccmA	792	2705	+	heme ABC exporter%2C ATP-binding protein CcmA	ccmA: heme ABC exporter%2C ATP-binding protein CcmA~[R] COG0488 ATPase components of ABC transporters with duplicated ATPase domains	gene	gene1	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2
CH54_20	CH54_20		CH54_20	21011	21694	-	hypothetical protein	conserved hypothetical protein~[S] COG3110 Uncharacterized protein conserved in bacteria	gene	gene19	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_20
CH54_200	CH54_200		CH54_200	204597	204830	+	hypothetical protein		gene	gene197	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_200
CH54_2000	CH54_2000	mdh	mdh	2193838	2194773	-	malate dehydrogenase%2C NAD-dependent	MDH_euk_gproteo: malate dehydrogenase%2C NAD-dependent~[C] COG0039 Malate/lactate dehydrogenases	gene	gene1992	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2000
CH54_2001	CH54_2001	argR	argR	2195237	2195707	+	arginine repressor	argR_whole: arginine repressor~[K] COG1438 Arginine repressor	gene	gene1993	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2001
CH54_2002	CH54_2002		CH54_2002	2196123	2196386	+	hypothetical protein	conserved hypothetical protein	gene	gene1994	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2002
CH54_2003	CH54_2003		CH54_2003	2196544	2196807	+	hypothetical protein	conserved hypothetical protein	gene	gene1995	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2003
CH54_2004	CH54_2004	mpl	mpl	2197029	2198414	-	L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase	UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase~mpl: UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase~[M] COG0773 UDP-N-acetylmuramate-alanine ligase	gene	gene1996	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2004
CH54_2005	CH54_2005		CH54_2005	2198480	2199598	+	fructose-1-6-bisphosphatase family protein	[G] COG0158 Fructose-1%2C6-bisphosphatase	gene	gene1997	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2005
CH54_2006	CH54_2006		CH54_2006	2199678	2201258	-	hypothetical protein	conserved hypothetical protein~[NT] COG0840 Methyl-accepting chemotaxis protein	gene	gene1998	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2006
CH54_2007	CH54_2007		CH54_2007	2201548	2202075	+	inorganic pyrophosphatase family protein	[C] COG0221 Inorganic pyrophosphatase	gene	gene1999	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2007
CH54_2008	CH54_2008		CH54_2008	2202199	2202561	-	AIG2-like family protein	[S] COG2105 Uncharacterized conserved protein	gene	gene2000	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2008
CH54_2009	CH54_2009		CH54_2009	2202564	2206448	-	hypothetical protein	conserved hypothetical protein~[S] COG2911 Uncharacterized protein conserved in bacteria	gene	gene2001	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2009
CH54_201	CH54_201		CH54_201	205089	205256	+	hypothetical protein	conserved hypothetical protein	gene	gene199	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_201
CH54_2010	CH54_2010		CH54_2010	2206445	2208181	-	surface antigen variable number repeat family protein	[M] COG0729 Outer membrane protein	gene	gene2002	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2010
CH54_2011	CH54_2011	msrA	msrA	2208578	2209219	+	peptide-methionine (S)-S-oxide reductase	msrA: peptide-methionine (S)-S-oxide reductase~[O] COG0225 Peptide methionine sulfoxide reductase	gene	gene2003	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2011
CH54_2012	CH54_2012		CH54_2012	2209594	2210925	+	CBS domain protein	[R] COG1253 Hemolysins and related proteins containing CBS domains	gene	gene2004	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2012
CH54_2013	CH54_2013		CH54_2013	2211120	2211332	-	hypothetical protein	conserved hypothetical protein	gene	gene2005	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2013
CH54_2014	CH54_2014	cysQ	cysQ	2212236	2212976	-	3'(2')%2C5'-bisphosphate nucleotidase	bisphos_cysQ: 3'(2')%2C5'-bisphosphate nucleotidase~[P] COG1218 3'-Phosphoadenosine 5'-phosphosulfate (PAPS) 3'-phosphatase	gene	gene2007	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2014
CH54_2015	CH54_2015		CH54_2015	2211670	2212239	+	hypothetical protein	conserved hypothetical protein~[R] COG3054 Predicted transcriptional regulator	gene	gene2006	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2015
CH54_2016	CH54_2016	cpdB	cpdB	2213175	2215304	+	2'%2C3'-cyclic-nucleotide 2'-phosphodiesterase	cycNucDiestase: 2'%2C3'-cyclic-nucleotide 2'-phosphodiesterase~[F] COG0737 5'-nucleotidase/2'%2C3'-cyclic phosphodiesterase and related esterases	gene	gene2008	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2016
CH54_2017	CH54_2017		CH54_2017	2216024	2216164	-	hypothetical protein		gene	gene2010	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2017
CH54_2018	CH54_2018	ric	ric	2215432	2216097	+	iron-sulfur cluster repair di-iron protein	feS_repair_RIC: iron-sulfur cluster repair di-iron protein~[D] COG2846 Regulator of cell morphogenesis and NO signaling	gene	gene2009	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2018
CH54_2019	CH54_2019		CH54_2019	2216182	2216802	-	domain amino terminal to FKBP-type peptidyl-prolyl isomerase family protein	[O] COG0545 FKBP-type peptidyl-prolyl cis-trans isomerases 1	gene	gene2011	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2019
CH54_202	CH54_202		CH54_202	205568	205957	+	ASCH domain protein	[S] COG4405 Uncharacterized protein conserved in bacteria	gene	gene200	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_202
CH54_2020	CH54_2020		CH54_2020	2217039	2217836	+	hypothetical protein	opacity-associated A N-terminal motif family protein~[M] COG3061 Cell envelope opacity-associated protein A	gene	gene2012	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2020
CH54_2021	CH54_2021		CH54_2021	2217978	2218430	+	hypothetical protein	conserved hypothetical protein	gene	gene2013	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2021
CH54_2022	CH54_2022	rplI	rplI	2218542	2218994	-	ribosomal protein L9	L9: ribosomal protein L9~[J] COG0359 Ribosomal protein L9	gene	gene2014	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2022
CH54_2023	CH54_2023	rpsR	rpsR	2219034	2219261	-	ribosomal protein S18	S18: ribosomal protein S18~[J] COG0238 Ribosomal protein S18	gene	gene2015	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2023
CH54_2024	CH54_2024		CH54_2024	2219266	2219586	-	single-strand binding family protein	[L] COG2965 Primosomal replication protein N	gene	gene2016	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2024
CH54_2025	CH54_2025	rpsF	rpsF	2219592	2219984	-	ribosomal protein S6	S6: ribosomal protein S6~[J] COG0360 Ribosomal protein S6	gene	gene2017	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2025
CH54_2026	CH54_2026		CH54_2026	2220396	2220671	+	hypothetical protein	conserved hypothetical protein	gene	gene2018	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2026
CH54_2027	CH54_2027		CH54_2027	2220770	2221519	-	dienelactone hydrolase family protein	[R] COG1073 Hydrolases of the alpha/beta superfamily	gene	gene2019	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2027
CH54_2028	CH54_2028		CH54_2028	2221723	2222031	+	hypothetical protein	conserved hypothetical protein	gene	gene2020	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2028
CH54_2029	CH54_2029		CH54_2029	2222044	2223678	-	hypothetical protein	acyl-CoA dehydrogenase%2C C-terminal domain protein~[I] COG1960 Acyl-CoA dehydrogenases	gene	gene2021	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2029
CH54_203	CH54_203		CH54_203	206073	206315	-	hypothetical protein	conserved hypothetical protein	gene	gene201	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_203
CH54_2030	CH54_2030		CH54_2030	2223892	2224632	-	RNA 2'-O ribose methyltransferase substrate binding family protein	[J] COG0566 rRNA methylases	gene	gene2022	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2030
CH54_2031	CH54_2031	rnr	rnr	2224704	2227250	-	ribonuclease R	RNase_R: ribonuclease R~[K] COG0557 Exoribonuclease R	gene	gene2023	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2031
CH54_2032	CH54_2032		CH54_2032	2227367	2227792	-	Rrf2 family protein	rrf2_super: Rrf2 family protein~[K] COG1959 Predicted transcriptional regulator	gene	gene2024	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2032
CH54_2033	CH54_2033	purA	purA	2228128	2229426	-	adenylosuccinate synthase	purA: adenylosuccinate synthase~[F] COG0104 Adenylosuccinate synthase	gene	gene2025	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2033
CH54_2034	CH54_2034		CH54_2034	2229526	2229726	-	hypothetical protein	conserved hypothetical protein~[S] COG3242 Uncharacterized protein conserved in bacteria	gene	gene2026	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2034
CH54_2035	CH54_2035	hflC	hflC	2229826	2230830	-	HflC protein	hflC: HflC protein~[O] COG0330 Membrane protease subunits%2C stomatin/prohibitin homologs	gene	gene2027	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2035
CH54_2036	CH54_2036	hflK	hflK	2230834	2232120	-	HflK protein	hflK: HflK protein~[O] COG0330 Membrane protease subunits%2C stomatin/prohibitin homologs	gene	gene2028	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2036
CH54_2037	CH54_2037	hflX	hflX	2232214	2233518	-	GTP-binding protein HflX	GTP_HflX: GTP-binding protein HflX~[R] COG2262 GTPases	gene	gene2029	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2037
CH54_2038	CH54_2038	hfq	hfq	2233617	2233922	-	RNA chaperone Hfq	hfq: RNA chaperone Hfq~[R] COG1923 Uncharacterized host factor I protein	gene	gene2030	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2038
CH54_2039	CH54_2039	miaA	miaA	2234038	2234979	-	tRNA dimethylallyltransferase	miaA: tRNA dimethylallyltransferase~[J] COG0324 tRNA delta(2)-isopentenylpyrophosphate transferase	gene	gene2031	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2039
CH54_204	CH54_204		CH54_204	206431	208140	-	diguanylate cyclase domain protein	GGDEF: diguanylate cyclase domain protein~[T] COG2199 FOG: GGDEF domain	gene	gene202	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_204
CH54_2040	CH54_2040	mutL	mutL	2234972	2236873	-	DNA mismatch repair MutL family protein	mutl: DNA mismatch repair MutL family protein~[L] COG0323 DNA mismatch repair enzyme (predicted ATPase)	gene	gene2032	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2040
CH54_2041	CH54_2041		CH54_2041	2236889	2238817	-	N-acetylmuramoyl-L-alanine amidase family protein	[M] COG0860 N-acetylmuramoyl-L-alanine amidase	gene	gene2033	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2041
CH54_2042	CH54_2042		CH54_2042	2238807	2239295	-	tRNA threonylcarbamoyl adenosine modification protein YjeE	T6A_YjeE: tRNA threonylcarbamoyl adenosine modification protein YjeE~[R] COG0802 Predicted ATPase or kinase	gene	gene2034	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2042
CH54_2043	CH54_2043		CH54_2043	2239306	2240820	-	yjeF-related family protein	[G] COG0063 Predicted sugar kinase	gene	gene2035	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2043
CH54_2044	CH54_2044	queG	queG	2240972	2241973	+	epoxyqueuosine reductase	[C] COG1600 Uncharacterized Fe-S protein	gene	gene2036	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2044
CH54_2045	CH54_2045		CH54_2045	2242317	2242392	-	tRNA-Gly		tRNA	gene2037	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2045
CH54_2046	CH54_2046		CH54_2046	2242456	2242531	-	tRNA-Gly		tRNA	gene2038	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2046
CH54_2047	CH54_2047		CH54_2047	2242636	2242711	-	tRNA-Gly		tRNA	gene2039	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2047
CH54_2048	CH54_2048		CH54_2048	2243212	2243757	-	exonuclease family protein	[A] COG1949 Oligoribonuclease (3'->5' exoribonuclease)	gene	gene2040	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2048
CH54_2049	CH54_2049	rsgA	rsgA	2244000	2245052	+	ribosome small subunit-dependent GTPase A	[R] COG1162 Predicted GTPases	gene	gene2041	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2049
CH54_205	CH54_205		CH54_205	208360	209364	-	spore Coat Protein U domain protein	[S] COG5430 Uncharacterized secreted protein	gene	gene203	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_205
CH54_2050	CH54_2050	psd	psd	2245129	2246010	+	phosphatidylserine decarboxylase	PS_decarb: phosphatidylserine decarboxylase~[I] COG0688 Phosphatidylserine decarboxylase	gene	gene2042	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2050
CH54_2051	CH54_2051		CH54_2051	2246050	2249394	+	mechanosensitive ion channel family protein	[M] COG3264 Small-conductance mechanosensitive channel	gene	gene2043	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2051
CH54_2052	CH54_2052		CH54_2052	2249731	2250708	-	EF-P lysine aminoacylase GenX	genX: EF-P lysine aminoacylase GenX~[J] COG2269 Truncated%2C possibly inactive%2C lysyl-tRNA synthetase (class II)	gene	gene2044	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2052
CH54_2053	CH54_2053	frdA	frdA	2251104	2252927	+	fumarate reductase%2C flavoprotein subunit	fum_red_Fp: fumarate reductase%2C flavoprotein subunit~[C] COG1053 Succinate dehydrogenase/fumarate reductase%2C flavoprotein subunit	gene	gene2045	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2053
CH54_2054	CH54_2054		CH54_2054	2252920	2253654	+	succinate dehydrogenase and fumarate reductase iron-sulfur family protein	dhsB: succinate dehydrogenase and fumarate reductase iron-sulfur family protein~[C] COG0479 Succinate dehydrogenase/fumarate reductase%2C Fe-S protein subunit	gene	gene2046	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2054
CH54_2055	CH54_2055		CH54_2055	2253671	2254063	+	fumarate reductase subunit C family protein	[C] COG3029 Fumarate reductase subunit C	gene	gene2047	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2055
CH54_2056	CH54_2056		CH54_2056	2254080	2254436	+	fumarate reductase subunit D family protein	[C] COG3080 Fumarate reductase subunit D	gene	gene2048	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2056
CH54_2057	CH54_2057		CH54_2057	2254614	2255156	+	lipocalin-like domain protein	[M] COG3040 Bacterial lipocalin	gene	gene2049	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2057
CH54_2058	CH54_2058		CH54_2058	2255203	2255517	-	small Multidrug Resistance family protein	[P] COG2076 Membrane transporters of cations and cationic drugs	gene	gene2050	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2058
CH54_2059	CH54_2059		CH54_2059	2255821	2255952	-	entericidin EcnA/B family protein	[S] COG5510 Predicted small secreted protein	gene	gene2051	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2059
CH54_206	CH54_206		CH54_206	209415	211856	-	outer membrane usher family protein	[NU] COG3188 P pilus assembly protein%2C porin PapC	gene	gene204	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_206
CH54_2060	CH54_2060	efp	efp	2256137	2256703	-	translation elongation factor P	efp: translation elongation factor P~[J] COG0231 Translation elongation factor P (EF-P)/translation initiation factor 5A (eIF-5A)	gene	gene2052	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2060
CH54_2061	CH54_2061	epmB	epmB	2256763	2257770	+	EF-P beta-lysylation protein EpmB	EFP_modif_epmB: EF-P beta-lysylation protein EpmB~[E] COG1509 Lysine 2%2C3-aminomutase	gene	gene2053	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2061
CH54_2062	CH54_2062		CH54_2062	2257999	2258337	-	hypothetical protein	conserved hypothetical protein	gene	gene2054	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2062
CH54_2063	CH54_2063	groL	groL	2258707	2260359	-	chaperonin GroL	groEL: chaperonin GroL~[O] COG0459 Chaperonin GroEL (HSP60 family)	gene	gene2055	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2063
CH54_2064	CH54_2064		CH54_2064	2260410	2260703	-	chaperonin 10 Kd subunit	[O] COG0234 Co-chaperonin GroES (HSP10)	gene	gene2056	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2064
CH54_2065	CH54_2065		CH54_2065	2260958	2261485	-	fxsA cytoplasmic membrane family protein	[R] COG3030 Protein affecting phage T7 exclusion by the F plasmid	gene	gene2057	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2065
CH54_2066	CH54_2066	aspA	aspA	2261927	2263363	+	aspartate ammonia-lyase	aspA: aspartate ammonia-lyase~[E] COG1027 Aspartate ammonia-lyase	gene	gene2058	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2066
CH54_2067	CH54_2067		CH54_2067	2263483	2264784	+	transporter%2C anaerobic C4-dicarboxylate uptake family protein	dcu: transporter%2C anaerobic C4-dicarboxylate uptake family protein~[R] COG2704 Anaerobic C4-dicarboxylate transporter	gene	gene2059	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2067
CH54_2068	CH54_2068		CH54_2068	2264987	2265310	+	cutA1 divalent ion tolerance family protein	[P] COG1324 Uncharacterized protein involved in tolerance to divalent cations	gene	gene2060	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2068
CH54_2069	CH54_2069		CH54_2069	2265286	2267022	+	cytochrome C biogenesis transmembrane region family protein	[OC] COG4232 Thiol:disulfide interchange protein	gene	gene2061	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2069
CH54_207	CH54_207		CH54_207	211943	212710	-	hypothetical protein	pili and flagellar-assembly chaperone%2C PapD N-terminal domain protein~[NU] COG3121 P pilus assembly protein%2C chaperone PapD	gene	gene205	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_207
CH54_2070	CH54_2070		CH54_2070	2267054	2269201	-	formate dehydrogenase%2C alpha subunit	fdh-alpha: formate dehydrogenase%2C alpha subunit~[C] COG0243 Anaerobic dehydrogenases%2C typically selenocysteine-containing	gene	gene2062	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2070
CH54_2071	CH54_2071		CH54_2071	2269263	2269778	-	4Fe-4S dicluster domain protein	[C] COG1142 Fe-S-cluster-containing hydrogenase components 2	gene	gene2063	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2071
CH54_2072	CH54_2072		CH54_2072	2269816	2271876	-	glutamate synthase%2C small subunit domain protein	gltD_gamma_fam: glutamate synthase%2C small subunit domain protein~[ER] COG0493 NADPH-dependent glutamate synthase beta chain and related oxidoreductases	gene	gene2064	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2072
CH54_2073	CH54_2073		CH54_2073	2272207	2272362	-	hypothetical protein	conserved hypothetical protein	gene	gene2065	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2073
CH54_2074	CH54_2074		CH54_2074	2272506	2273837	+	D-galactonate transporter family protein	2A0114: D-galactonate transporter family protein~[GEPR] COG0477 Permeases of the major facilitator superfamily	gene	gene2066	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2074
CH54_2075	CH54_2075	garD	garD	2273944	2275509	+	galactarate dehydratase	galactar-dH20: galactarate dehydratase~[G] COG2721 Altronate dehydratase	gene	gene2067	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2075
CH54_2076	CH54_2076		CH54_2076	2275599	2276756	-	sugar diacid recognition family protein	[KT] COG3835 Sugar diacid utilization regulator	gene	gene2068	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2076
CH54_2077	CH54_2077		CH54_2077	2276962	2278110	-	glycerate kinase family protein	[G] COG1929 Glycerate kinase	gene	gene2069	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2077
CH54_2078	CH54_2078		CH54_2078	2278267	2279151	-	2-hydroxy-3-oxopropionate reductase	tartro_sem_red: 2-hydroxy-3-oxopropionate reductase~[I] COG2084 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases	gene	gene2070	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2078
CH54_2079	CH54_2079	garL	garL	2279222	2279992	-	2-dehydro-3-deoxyglucarate aldolase	garL: 2-dehydro-3-deoxyglucarate aldolase~[G] COG3836 2%2C4-dihydroxyhept-2-ene-1%2C7-dioic acid aldolase	gene	gene2071	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2079
CH54_208	CH54_208		CH54_208	212757	213314	-	spore Coat Protein U domain protein	[S] COG5430 Uncharacterized secreted protein	gene	gene206	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_208
CH54_2080	CH54_2080		CH54_2080	2280460	2281035	+	bacterial regulatory s%2C tetR family protein	[K] COG1309 Transcriptional regulator	gene	gene2072	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2080
CH54_2081	CH54_2081		CH54_2081	2281179	2281254	+	tRNA-Phe		tRNA	gene2073	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2081
CH54_2082	CH54_2082		CH54_2082	2281477	2282439	-	hypothetical protein	phage integrase%2C N-terminal SAM-like domain protein~[L] COG0582 Integrase	gene	gene2074	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2082
CH54_2083	CH54_2083		CH54_2083	2282544	2282771	-	putative exported protein		gene	gene2075	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2083
CH54_2084	CH54_2084		CH54_2084	2282758	2282943	-	hypothetical protein		gene	gene2076	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2084
CH54_2085	CH54_2085		CH54_2085	2283135	2283311	+	hypothetical protein		gene	gene2077	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2085
CH54_2086	CH54_2086		CH54_2086	2283510	2284001	+	hypothetical protein		gene	gene2078	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2086
CH54_2087	CH54_2087		CH54_2087	2284165	2285325	-	integrase core domain protein	[L] COG2826 Transposase and inactivated derivatives%2C IS30 family	gene	gene2079	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2087
CH54_2088	CH54_2088		CH54_2088	2285668	2286339	+	hypothetical protein		gene	gene2080	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2088
CH54_2089	CH54_2089		CH54_2089	2286485	2288212	-	hypothetical protein	uvrD/REP helicase N-terminal domain protein~[L] COG0210 Superfamily I DNA and RNA helicases	gene	gene2081	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2089
CH54_209	CH54_209		CH54_209	213327	213884	-	spore Coat Protein U domain protein	[S] COG5430 Uncharacterized secreted protein	gene	gene207	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_209
CH54_2090	CH54_2090		CH54_2090	2288209	2290083	-	AAA domain protein	[L] COG3593 Predicted ATP-dependent endonuclease of the OLD family	gene	gene2082	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2090
CH54_2091	CH54_2091	traI	traI	2290376	2291566	-	integrating conjugative element relaxase%2C PFGI-1 class	ICE_TraI_Pfluor: integrating conjugative element relaxase%2C PFGI-1 class	gene	gene2083	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2091
CH54_2092	CH54_2092		CH54_2092	2291607	2292416	-	DNA/RNA non-specific endonuclease family protein	[F] COG1864 DNA/RNA endonuclease G%2C NUC1	gene	gene2084	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2092
CH54_2093	CH54_2093		CH54_2093	2293197	2293496	-	hypothetical protein	conserved hypothetical protein	gene	gene2085	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2093
CH54_2094	CH54_2094		CH54_2094	2293519	2294493	-	hypothetical protein	conserved hypothetical protein~[L] COG4227 Antirestriction protein	gene	gene2086	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2094
CH54_2095	CH54_2095		CH54_2095	2295180	2295596	+	hypothetical protein		gene	gene2087	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2095
CH54_2096	CH54_2096		CH54_2096	2296115	2296561	+	hypothetical protein	conserved hypothetical protein	gene	gene2088	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2096
CH54_2097	CH54_2097		CH54_2097	2296582	2297673	+	37-kD nucleoid-associated bacterial family protein		gene	gene2089	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2097
CH54_2098	CH54_2098		CH54_2098	2297670	2298659	+	hypothetical protein	[S] COG2357 Uncharacterized protein conserved in bacteria%3B region found in RelA / SpoT s family protein	gene	gene2090	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2098
CH54_2099	CH54_2099		CH54_2099	2299020	2299190	+	hypothetical protein	conserved hypothetical protein	gene	gene2091	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2099
CH54_21	CH54_21		CH54_21	22009	22425	+	coA binding domain protein	[R] COG1832 Predicted CoA-binding protein	gene	gene20	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_21
CH54_210	CH54_210		CH54_210	213890	214426	-	spore Coat Protein U domain protein	[S] COG5430 Uncharacterized secreted protein	gene	gene208	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_210
CH54_2100	CH54_2100		CH54_2100	2299917	2300798	-	hypothetical protein	phage integrase%2C N-terminal family protein~[L] COG0582 Integrase	gene	gene2092	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2100
CH54_2101	CH54_2101		CH54_2101	2301880	2302317	-	hypothetical protein		gene	gene2093	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2101
CH54_2102	CH54_2102		CH54_2102	2303200	2303556	-	helix-turn-helix family protein	[K] COG3636 Predicted transcriptional regulator	gene	gene2094	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2102
CH54_2103	CH54_2103		CH54_2103	2303537	2303905	-	hypothetical protein	conserved hypothetical protein~[S] COG3657 Uncharacterized protein conserved in bacteria	gene	gene2095	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2103
CH54_2104	CH54_2104		CH54_2104	2303850	2304602	-	integrase core domain protein	[L] COG2801 Transposase and inactivated derivatives	gene	gene2096	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2104
CH54_2105	CH54_2105		CH54_2105	2304713	2305024	-	transposase family protein	[L] COG2963 Transposase and inactivated derivatives	gene	gene2097	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2105
CH54_2106	CH54_2106		CH54_2106	2305582	2305800	+	hypothetical protein	conserved hypothetical protein	gene	gene2098	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2106
CH54_2107	CH54_2107		CH54_2107	2305836	2307338	-	hypothetical protein	traG-like%2C N-terminal region family protein	gene	gene2099	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2107
CH54_2108	CH54_2108		CH54_2108	2307338	2307613	-	putative membrane protein		gene	gene2100	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2108
CH54_2109	CH54_2109		CH54_2109	2307697	2309118	-	integrating conjugative element protein%2C family	integrating conjugative element protein%2C PFL_4711 family~conj_TIGR03755: integrating conjugative element protein%2C PFL_4711 family	gene	gene2101	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2109
CH54_211	CH54_211		CH54_211	214754	216208	-	organic Anion Transporter Polypeptide family protein	[GEPR] COG0477 Permeases of the major facilitator superfamily	gene	gene209	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_211
CH54_2110	CH54_2110		CH54_2110	2309142	2310095	-	traU family protein		gene	gene2102	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2110
CH54_2111	CH54_2111		CH54_2111	2310095	2310493	-	hypothetical protein	conserved hypothetical protein	gene	gene2103	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2111
CH54_2112	CH54_2112		CH54_2112	2310822	2311181	+	hypothetical protein	conserved hypothetical protein~[S] COG4679 Phage-related protein	gene	gene2104	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2112
CH54_2113	CH54_2113		CH54_2113	2311178	2311516	+	helix-turn-helix domain protein	[S] COG5606 Uncharacterized conserved small protein	gene	gene2105	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2113
CH54_2114	CH54_2114		CH54_2114	2311636	2312520	+		helix-turn-helix domain protein	pseudogene	gene2106	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2114
CH54_2116	CH54_2116		CH54_2116	2313391	2314308	-	hypothetical protein		gene	gene2107	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2116
CH54_2117	CH54_2117		CH54_2117	2314311	2315387	-	hypothetical protein	conserved hypothetical protein	gene	gene2108	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2117
CH54_2118	CH54_2118		CH54_2118	2315562	2315738	-	hypothetical protein		gene	gene2109	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2118
CH54_2119	CH54_2119		CH54_2119	2316121	2317134	-	transposase family protein	[L] COG3547 Transposase and inactivated derivatives	gene	gene2110	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2119
CH54_212	CH54_212		CH54_212	216337	217233	+	bacterial regulatory helix-turn-helix%2C lysR family protein	[K] COG0583 Transcriptional regulator	gene	gene210	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_212
CH54_2120	CH54_2120		CH54_2120	2317908	2318156	+	hypothetical protein		gene	gene2111	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2120
CH54_2121	CH54_2121		CH54_2121	2318179	2318823	+	hypothetical protein		gene	gene2112	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2121
CH54_2122	CH54_2122		CH54_2122	2319059	2319241	+	hypothetical protein		gene	gene2113	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2122
CH54_2123	CH54_2123		CH54_2123	2319601	2319945	+	hypothetical protein	conserved hypothetical protein~[S] COG4679 Phage-related protein	gene	gene2114	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2123
CH54_2124	CH54_2124		CH54_2124	2319947	2320264	+	helix-turn-helix family protein	[S] COG5606 Uncharacterized conserved small protein	gene	gene2115	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2124
CH54_2125	CH54_2125		CH54_2125	2320389	2320742	-	helix-turn-helix family protein	[K] COG1396 Predicted transcriptional regulators	gene	gene2116	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2125
CH54_2126	CH54_2126		CH54_2126	2320947	2321150	+	hypothetical protein	conserved hypothetical protein	gene	gene2117	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2126
CH54_2127	CH54_2127		CH54_2127	2321144	2321476	+	hypothetical protein		gene	gene2118	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2127
CH54_2128	CH54_2128		CH54_2128	2321654	2324452	-	conjugative transfer ATPase%2C family	conjugative transfer ATPase%2C PFL_4706 family~traC_PFL_4706: conjugative transfer ATPase%2C PFL_4706 family	gene	gene2119	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2128
CH54_2129	CH54_2129		CH54_2129	2324452	2324862	-	hypothetical protein	conserved hypothetical protein	gene	gene2120	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2129
CH54_213	CH54_213		CH54_213	217268	219898	-	mce related family protein	[R] COG3008 Paraquat-inducible protein B	gene	gene211	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_213
CH54_2130	CH54_2130		CH54_2130	2324872	2326356	-	bacterial conjugation TrbI-like family protein		gene	gene2121	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2130
CH54_2131	CH54_2131		CH54_2131	2326346	2327248	-	hypothetical protein	conserved hypothetical protein	gene	gene2122	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2131
CH54_2132	CH54_2132		CH54_2132	2327248	2327901	-	hypothetical protein	conserved hypothetical protein	gene	gene2123	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2132
CH54_2133	CH54_2133		CH54_2133	2327894	2328274	-	hypothetical protein	conserved hypothetical protein	gene	gene2124	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2133
CH54_2134	CH54_2134		CH54_2134	2328287	2328667	-	hypothetical protein	conserved hypothetical protein	gene	gene2125	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2134
CH54_2135	CH54_2135		CH54_2135	2328697	2328933	-	hypothetical protein	conserved hypothetical protein	gene	gene2126	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2135
CH54_2136	CH54_2136		CH54_2136	2328930	2329244	-	hypothetical protein	conserved hypothetical protein	gene	gene2127	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2136
CH54_2137	CH54_2137		CH54_2137	2330122	2331204	-	TIR domain protein		gene	gene2128	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2137
CH54_2138	CH54_2138		CH54_2138	2331403	2332839	-	SIR2-like domain protein		gene	gene2129	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2138
CH54_2139	CH54_2139		CH54_2139	2332997	2333479	-	TIR domain protein		gene	gene2130	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2139
CH54_214	CH54_214		CH54_214	219867	221114	-	integral membrane%2C PqiA family protein	pqiA_fam: integral membrane%2C PqiA family protein~[S] COG2995 Uncharacterized paraquat-inducible protein A	gene	gene212	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_214
CH54_2140	CH54_2140		CH54_2140	2333599	2335518	-	NACHT domain protein	[T] COG5635 Predicted NTPase (NACHT family)	gene	gene2131	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2140
CH54_2141	CH54_2141		CH54_2141	2336173	2336931	-	hypothetical protein	conserved hypothetical protein	gene	gene2132	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2141
CH54_2142	CH54_2142	traD	traD	2336966	2339035	-	conjugative coupling factor TraD%2C PFGI-1 class	conj_TOL_TraD: conjugative coupling factor TraD%2C PFGI-1 class	gene	gene2133	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2142
CH54_2143	CH54_2143		CH54_2143	2339028	2339174	-	hypothetical protein		gene	gene2134	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2143
CH54_2144	CH54_2144		CH54_2144	2339171	2339707	-	integrating conjugative element%2C family domain protein	integrating conjugative element%2C PFL_4695 family domain protein~ICE_PFL_4695: integrating conjugative element%2C PFL_4695 family domain protein	gene	gene2135	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2144
CH54_2145	CH54_2145		CH54_2145	2339704	2340483	-	hypothetical protein	conserved hypothetical protein	gene	gene2136	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2145
CH54_2146	CH54_2146		CH54_2146	2340480	2341127	-	putative lipoprotein		gene	gene2137	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2146
CH54_2147	CH54_2147		CH54_2147	2341181	2341933	-	integrase core domain protein	[L] COG2801 Transposase and inactivated derivatives	gene	gene2138	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2147
CH54_2148	CH54_2148		CH54_2148	2342044	2342355	-	transposase family protein	[L] COG2963 Transposase and inactivated derivatives	gene	gene2139	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2148
CH54_2149	CH54_2149		CH54_2149	2342700	2343977	+	bacterial SH3 domain protein		gene	gene2140	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2149
CH54_215	CH54_215		CH54_215	221334	221831	+	hypothetical protein	[T] COG1956 GAF domain-containing protein	gene	gene213	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_215
CH54_2150	CH54_2150		CH54_2150	2344286	2345428	+	HNH endonuclease family protein		gene	gene2141	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2150
CH54_2151	CH54_2151		CH54_2151	2345667	2346980	+	hypothetical protein		gene	gene2142	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2151
CH54_2152	CH54_2152		CH54_2152	2347038	2348297	-	helix-turn-helix domain protein		gene	gene2143	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2152
CH54_2153	CH54_2153		CH54_2153	2348297	2348866	-	hypothetical protein	conserved hypothetical protein	gene	gene2144	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2153
CH54_2154	CH54_2154		CH54_2154	2348859	2349101	-	phage/conjugal plasmid C-4 type zinc finger%2C TraR family protein	C4_traR_proteo: phage/conjugal plasmid C-4 type zinc finger%2C TraR family protein~[T] COG1734 DnaK suppressor protein	gene	gene2145	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2154
CH54_2155	CH54_2155		CH54_2155	2349091	2350713	-	parB-like nuclease domain protein		gene	gene2146	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2155
CH54_2156	CH54_2156	dnaB	dnaB	2350703	2352046	-	replicative DNA helicase	dnaB: replicative DNA helicase~[L] COG0305 Replicative DNA helicase	gene	gene2147	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2156
CH54_2157	CH54_2157		CH54_2157	2352043	2352918	-	anion-transporting ATPase family protein	[D] COG1192 ATPases involved in chromosome partitioning	gene	gene2148	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2157
CH54_2158	CH54_2158		CH54_2158	2353334	2353462	-	hypothetical protein		gene	gene2149	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2158
CH54_2159	CH54_2159		CH54_2159	2353814	2354059	+	hemin uptake hemP family protein		gene	gene2150	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2159
CH54_216	CH54_216		CH54_216	221927	222655	+	proQ/FINO family protein	[T] COG3109 Activator of osmoprotectant transporter ProP	gene	gene214	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_216
CH54_2160	CH54_2160		CH54_2160	2354211	2356241	+	TonB-dependent hemoglobin/transferrin/lactoferrin receptor family protein	tonB-hemlactrns: TonB-dependent hemoglobin/transferrin/lactoferrin receptor family protein~[P] COG1629 Outer membrane receptor proteins%2C mostly Fe transport	gene	gene2151	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2160
CH54_2161	CH54_2161		CH54_2161	2356353	2357390	+	hemin-degrading HemS.ChuX domain protein	[P] COG3720 Putative heme degradation protein	gene	gene2152	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2161
CH54_2162	CH54_2162		CH54_2162	2357387	2358226	+	periplasmic binding family protein	[P] COG4558 ABC-type hemin transport system%2C periplasmic component	gene	gene2153	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2162
CH54_2163	CH54_2163		CH54_2163	2358223	2359227	+	fecCD transport family protein	[P] COG0609 ABC-type Fe3+-siderophore transport system%2C permease component	gene	gene2154	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2163
CH54_2164	CH54_2164		CH54_2164	2359220	2360020	+	ABC transporter family protein	[P] COG4559 ABC-type hemin transport system%2C ATPase component	gene	gene2155	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2164
CH54_2165	CH54_2165		CH54_2165	2360029	2361480	-	aminotransferase class I and II family protein	[KE] COG1167 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs	gene	gene2156	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2165
CH54_2166	CH54_2166		CH54_2166	2361647	2361886	+	hypothetical protein	conserved hypothetical protein	gene	gene2157	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2166
CH54_2167	CH54_2167		CH54_2167	2361951	2364086	-	TonB-dependent siderophore receptor family protein	tonB-siderophor: TonB-dependent siderophore receptor family protein~[P] COG1629 Outer membrane receptor proteins%2C mostly Fe transport	gene	gene2158	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2167
CH54_2168	CH54_2168		CH54_2168	2364385	2366823	+	mechanosensitive ion channel family protein	[M] COG3264 Small-conductance mechanosensitive channel	gene	gene2159	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2168
CH54_2169	CH54_2169		CH54_2169	2366977	2367261	-	sulfurtransferase TusA family protein	[O] COG0425 Predicted redox protein%2C regulator of disulfide bond formation	gene	gene2160	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2169
CH54_217	CH54_217		CH54_217	222675	224747	+	hypothetical protein	prc: C-terminal processing peptidase family protein~[M] COG0793 Periplasmic protease	gene	gene215	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_217
CH54_2170	CH54_2170		CH54_2170	2367258	2368460	-	sulfur transport family protein	[R] COG2391 Predicted transporter component	gene	gene2161	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2170
CH54_2171	CH54_2171		CH54_2171	2368659	2369735	-	type III secretion%2C YscU/HrpY family protein	flhB_rel_III: type III secretion%2C YscU/HrpY family protein~[U] COG4792 Type III secretory pathway%2C component EscU	gene	gene2162	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2171
CH54_2172	CH54_2172	epaR	epaR	2369725	2370519	-	type III secretion apparatus protein SpaR/YscT/HrcT	fliR_like_III: type III secretion apparatus protein SpaR/YscT/HrcT~[U] COG4791 Type III secretory pathway%2C component EscT	gene	gene2163	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2172
CH54_2173	CH54_2173		CH54_2173	2370521	2370790	-	type III secretion%2C HrpO family protein	fliQ_rel_III: type III secretion%2C HrpO family protein~[U] COG4794 Type III secretory pathway%2C component EscS	gene	gene2164	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2173
CH54_2174	CH54_2174	epaP	epaP	2370813	2371463	-	type III secretion apparatus protein%2C YscR/HrcR family	yscR: type III secretion apparatus protein%2C YscR/HrcR family~[U] COG4790 Type III secretory pathway%2C component EscR	gene	gene2165	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2174
CH54_2175	CH54_2175	epaO	epaO	2371698	2372648	-	type III secretion apparatus protein%2C YscQ/HrcQ family	spaO_YscQ: type III secretion apparatus protein%2C YscQ/HrcQ family~[NU] COG1886 Flagellar motor switch/type III secretory pathway protein	gene	gene2166	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2175
CH54_2176	CH54_2176		CH54_2176	2372626	2373024	-	hypothetical protein	conserved hypothetical protein	gene	gene2167	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2176
CH54_2177	CH54_2177		CH54_2177	2373005	2373340	-	putative type III secretion system apparatus protein		gene	gene2168	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2177
CH54_2178	CH54_2178		CH54_2178	2373403	2374743	-	ATPase%2C FliI/YscN family protein	fliI_yscN: ATPase%2C FliI/YscN family protein~[NU] COG1157 Flagellar biosynthesis/type III secretory pathway ATPase	gene	gene2169	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2178
CH54_2179	CH54_2179		CH54_2179	2374730	2376769	-	type III secretion%2C HrcV family protein	hrcV: type III secretion%2C HrcV family protein~[U] COG4789 Type III secretory pathway%2C component EscV	gene	gene2170	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2179
CH54_218	CH54_218		CH54_218	225076	225957	+	peptidase M48 family protein	[O] COG0501 Zn-dependent protease with chaperone function	gene	gene216	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_218
CH54_2180	CH54_2180		CH54_2180	2376766	2377137	-	hypothetical protein		gene	gene2171	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2180
CH54_2181	CH54_2181		CH54_2181	2377223	2378236	-	type III secretion effector delivery regulator%2C TyeA family	type_III_tyeA: type III secretion effector delivery regulator%2C TyeA family	gene	gene2172	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2181
CH54_2182	CH54_2182		CH54_2182	2378220	2378897	-	type III secretion apparatus protein%2C HrpE/YscL family	hrpE_YscL_not: type III secretion apparatus protein%2C HrpE/YscL family	gene	gene2173	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2182
CH54_2183	CH54_2183		CH54_2183	2378894	2379487	-	type III secretion system subunit		gene	gene2174	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2183
CH54_2184	CH54_2184		CH54_2184	2379504	2380235	-	type III secretion apparatus lipoprotein%2C YscJ/HrcJ family	III_secr_YscJ: type III secretion apparatus lipoprotein%2C YscJ/HrcJ family~[U] COG4669 Type III secretory pathway%2C lipoprotein EscJ	gene	gene2175	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2184
CH54_2185	CH54_2185		CH54_2185	2380232	2380480	-	hypothetical protein	yscI_hrpB_dom: type III secretion apparatus protein%2C YscI/HrpB%2C C-terminal domain	gene	gene2176	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2185
CH54_2186	CH54_2186		CH54_2186	2380521	2380796	-	hypothetical protein	conserved hypothetical protein	gene	gene2177	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2186
CH54_2187	CH54_2187	eprI	eprI	2380793	2381008	-	type III secretion apparatus needle protein	III_needle: type III secretion apparatus needle protein	gene	gene2178	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2187
CH54_2188	CH54_2188		CH54_2188	2381017	2381724	-	helix-turn-helix domain protein	[K] COG2207 AraC-type DNA-binding domain-containing proteins	gene	gene2179	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2188
CH54_2189	CH54_2189		CH54_2189	2381792	2382670	-	hypothetical protein		gene	gene2180	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2189
CH54_219	CH54_219		CH54_219	226008	227201	-	transposase DDE domain protein		gene	gene217	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_219
CH54_2190	CH54_2190		CH54_2190	2382716	2383198	-	TPR repeat family protein	[R] COG0457 FOG: TPR repeat	gene	gene2181	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2190
CH54_2191	CH54_2191		CH54_2191	2383207	2383608	-	type III secretion system regulator family protein		gene	gene2182	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2191
CH54_2192	CH54_2192		CH54_2192	2383612	2384217	-	enterobacterial EspB family protein		gene	gene2183	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2192
CH54_2193	CH54_2193		CH54_2193	2384228	2385694	-	secretion system effector C (SseC) like family protein	[S] COG5613 Uncharacterized conserved protein	gene	gene2184	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2193
CH54_2194	CH54_2194		CH54_2194	2385696	2386154	-	type III secretion low calcium response chaperone LcrH/SycD	lcrH_SycD: type III secretion low calcium response chaperone LcrH/SycD~[R] COG0457 FOG: TPR repeat	gene	gene2185	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2194
CH54_2195	CH54_2195		CH54_2195	2386184	2386771	-	espA-like secreted family protein		gene	gene2186	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2195
CH54_2196	CH54_2196		CH54_2196	2386819	2387115	-	hypothetical protein		gene	gene2187	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2196
CH54_2197	CH54_2197		CH54_2197	2387227	2387442	-	putative type III secretion apparatus		gene	gene2188	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2197
CH54_2198	CH54_2198		CH54_2198	2387460	2388671	-	type III secretion apparatus protein%2C YscD/HrpQ family	type_III_yscD: type III secretion apparatus protein%2C YscD/HrpQ family	gene	gene2189	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2198
CH54_2199	CH54_2199		CH54_2199	2388673	2390154	-	type III secretion outer membrane pore%2C YscC/HrcC family	type_III_yscC: type III secretion outer membrane pore%2C YscC/HrcC family~[NU] COG1450 Type II secretory pathway%2C component PulD	gene	gene2190	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2199
CH54_22	CH54_22		CH54_22	22603	22920	-	hemimethylated DNA binding domain protein	yccV: hemimethylated DNA binding domain protein~[S] COG3785 Uncharacterized conserved protein	gene	gene21	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_22
CH54_220	CH54_220		CH54_220	227319	228686	-	major Facilitator Superfamily protein	[GEPR] COG0477 Permeases of the major facilitator superfamily	gene	gene218	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_220
CH54_2200	CH54_2200		CH54_2200	2390151	2390609	-	hypothetical protein		gene	gene2191	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2200
CH54_2201	CH54_2201		CH54_2201	2390773	2393610	+	response regulator	[T] COG0642 Signal transduction histidine kinase	gene	gene2192	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2201
CH54_2202	CH54_2202		CH54_2202	2393607	2394239	+	bacterial regulatory s%2C luxR family protein	[TK] COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain	gene	gene2193	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2202
CH54_2203	CH54_2203		CH54_2203	2394402	2395715	-	dicarboxylate symporter family protein	sodium:dicarboxylate symporter family protein~[C] COG1301 Na+/H+-dicarboxylate symporters	gene	gene2194	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2203
CH54_2204	CH54_2204	acs	acs	2396635	2398593	+	acetate--CoA ligase	ac_CoA_lig_AcsA: acetate--CoA ligase~[I] COG0365 Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases	gene	gene2195	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2204
CH54_2205	CH54_2205		CH54_2205	2398647	2398958	+	hypothetical protein	conserved hypothetical protein~[S] COG3162 Predicted membrane protein	gene	gene2196	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2205
CH54_2206	CH54_2206	actP	actP	2398955	2400610	+	cation/acetate symporter ActP	symport_actP: cation/acetate symporter ActP~[R] COG4147 Predicted symporter	gene	gene2197	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2206
CH54_2207	CH54_2207		CH54_2207	2400972	2401084	-	5S ribosomal RNA		rRNA	gene2198	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2207
CH54_2208	CH54_2208		CH54_2208	2401204	2404193	-	23S ribosomal RNA		rRNA	gene2199	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2208
CH54_2209	CH54_2209		CH54_2209	2404405	2404480	-	tRNA-Ala		tRNA	gene2200	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2209
CH54_221	CH54_221		CH54_221	229021	230187	+	oligogalacturonate lyase family protein	[U] COG0823 Periplasmic component of the Tol biopolymer transport system	gene	gene219	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_221
CH54_2210	CH54_2210		CH54_2210	2404591	2404667	-	tRNA-Ile		tRNA	gene2201	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2210
CH54_2211	CH54_2211		CH54_2211	2404776	2406304	-	16S ribosomal RNA		rRNA	gene2202	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2211
CH54_2212	CH54_2212		CH54_2212	2406412	2406552	-	hypothetical protein	conserved hypothetical protein	gene	gene2203	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2212
CH54_2213	CH54_2213		CH54_2213	2406857	2407399	+	hexapeptide repeat of succinyl-transferase family protein	[R] COG0663 Carbonic anhydrases/acetyltransferases%2C isoleucine patch superfamily	gene	gene2204	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2213
CH54_2214	CH54_2214	aroE	aroE	2407458	2408279	-	shikimate dehydrogenase	aroE: shikimate dehydrogenase~[E] COG0169 Shikimate 5-dehydrogenase	gene	gene2205	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2214
CH54_2215	CH54_2215		CH54_2215	2408288	2408875	-	telomere recombination family protein	[J] COG0009 Putative translation factor (SUA5)	gene	gene2206	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2215
CH54_2216	CH54_2216		CH54_2216	2408868	2409404	-	regulatory%2C FmdB family domain protein	cxxC_CxxC_SSSS: regulatory%2C FmdB family domain protein~[L] COG0551 Zn-finger domain associated with topoisomerase type I	gene	gene2207	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2216
CH54_2217	CH54_2217		CH54_2217	2409446	2409919	-	hypothetical protein	conserved hypothetical protein~[S] COG2922 Uncharacterized protein conserved in bacteria	gene	gene2208	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2217
CH54_2218	CH54_2218	dprA	dprA	2409891	2411012	-	DNA protecting protein DprA	dprA: DNA protecting protein DprA~[LU] COG0758 Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake	gene	gene2209	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2218
CH54_2219	CH54_2219	def	def	2411146	2411658	+	peptide deformylase	pept_deformyl: peptide deformylase~[J] COG0242 N-formylmethionyl-tRNA deformylase	gene	gene2210	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2219
CH54_222	CH54_222		CH54_222	230373	231164	+	iclR helix-turn-helix domain protein	[K] COG1414 Transcriptional regulator	gene	gene220	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_222
CH54_2220	CH54_2220	fmt	fmt	2411701	2412648	+	methionyl-tRNA formyltransferase	fmt: methionyl-tRNA formyltransferase~[J] COG0223 Methionyl-tRNA formyltransferase	gene	gene2211	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2220
CH54_2221	CH54_2221	rsmB	rsmB	2412755	2414044	+	16S rRNA (cytosine(967)-C(5))-methyltransferase	rsmB: 16S rRNA (cytosine(967)-C(5))-methyltransferase~[J] COG0144 tRNA and rRNA cytosine-C5-methylases	gene	gene2212	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2221
CH54_2222	CH54_2222		CH54_2222	2414096	2415472	+	ketopantoate reductase PanE/ApbA family protein	[P] COG0569 K+ transport systems%2C NAD-binding component	gene	gene2213	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2222
CH54_2223	CH54_2223	mscL	mscL	2415594	2416004	+	large conductance mechanosensitive channel protein	mscL: large conductance mechanosensitive channel protein~[M] COG1970 Large-conductance mechanosensitive channel	gene	gene2214	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2223
CH54_2224	CH54_2224		CH54_2224	2416065	2416265	-	hypothetical protein	domain of unknown function family protein~[S] COG3036 Uncharacterized protein conserved in bacteria	gene	gene2215	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2224
CH54_2225	CH54_2225	zntR	zntR	2416355	2416780	-	Zn(II)-responsive transcriptional regulator	zntR: Zn(II)-responsive transcriptional regulator~[K] COG0789 Predicted transcriptional regulators	gene	gene2216	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2225
CH54_2226	CH54_2226		CH54_2226	2416784	2417155	-	hypothetical protein	conserved hypothetical protein	gene	gene2217	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2226
CH54_2227	CH54_2227	rplQ	rplQ	2417320	2417709	-	ribosomal protein L17	L17: ribosomal protein L17~[J] COG0203 Ribosomal protein L17	gene	gene2218	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2227
CH54_2228	CH54_2228	rpoA	rpoA	2417750	2418742	-	DNA-directed RNA polymerase%2C alpha subunit	rpoA: DNA-directed RNA polymerase%2C alpha subunit~[K] COG0202 DNA-directed RNA polymerase%2C alpha subunit/40 kD subunit	gene	gene2219	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2228
CH54_2229	CH54_2229	rpsD	rpsD	2418768	2419388	-	ribosomal protein S4	rpsD_bact: ribosomal protein S4~[J] COG0522 Ribosomal protein S4 and related proteins	gene	gene2220	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2229
CH54_223	CH54_223		CH54_223	231440	232291	+	N-acetylmuramoyl-L-alanine amidase family protein	[V] COG3023 Negative regulator of beta-lactamase expression	gene	gene221	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_223
CH54_2230	CH54_2230	rpsK	rpsK	2419419	2419808	-	30S ribosomal protein S11	bact_S11: 30S ribosomal protein S11~[J] COG0100 Ribosomal protein S11	gene	gene2221	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2230
CH54_2231	CH54_2231	rpsM	rpsM	2419825	2420181	-	30S ribosomal protein S13	bact_S13: 30S ribosomal protein S13~[J] COG0099 Ribosomal protein S13	gene	gene2222	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2231
CH54_2232	CH54_2232	rpmJ	rpmJ	2420329	2420445	-	ribosomal protein L36	rpmJ_bact: ribosomal protein L36~[J] COG0257 Ribosomal protein L36	gene	gene2223	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2232
CH54_2233	CH54_2233	secY	secY	2420480	2421811	-	preprotein translocase%2C SecY subunit	3a0501s007: preprotein translocase%2C SecY subunit~[U] COG0201 Preprotein translocase subunit SecY	gene	gene2224	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2233
CH54_2234	CH54_2234	rplO	rplO	2421819	2422253	-	ribosomal protein L15	rplO_bact: ribosomal protein L15~[J] COG0200 Ribosomal protein L15	gene	gene2225	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2234
CH54_2235	CH54_2235	rpmD	rpmD	2422257	2422436	-	ribosomal protein L30	rpmD_bact: ribosomal protein L30~[J] COG1841 Ribosomal protein L30/L7E	gene	gene2226	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2235
CH54_2236	CH54_2236	rpsE	rpsE	2422439	2422942	-	ribosomal protein S5	rpsE_bact: ribosomal protein S5~[J] COG0098 Ribosomal protein S5	gene	gene2227	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2236
CH54_2237	CH54_2237	rplR	rplR	2422957	2423310	-	ribosomal protein L18	L18_bact: ribosomal protein L18~[J] COG0256 Ribosomal protein L18	gene	gene2228	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2237
CH54_2238	CH54_2238	rplF	rplF	2423320	2423853	-	ribosomal protein L6	L6_bact: ribosomal protein L6~[J] COG0097 Ribosomal protein L6P/L9E	gene	gene2229	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2238
CH54_2239	CH54_2239		CH54_2239	2423868	2424260	-	ribosomal S8 family protein	[J] COG0096 Ribosomal protein S8	gene	gene2230	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2239
CH54_224	CH54_224		CH54_224	232503	233894	-	dicarboxylate symporter family protein	sodium:dicarboxylate symporter family protein~[R] COG1823 Predicted Na+/dicarboxylate symporter	gene	gene222	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_224
CH54_2240	CH54_2240		CH54_2240	2424294	2424599	-	ribosomal S14p/S29e family protein	[J] COG0199 Ribosomal protein S14	gene	gene2231	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2240
CH54_2241	CH54_2241		CH54_2241	2424613	2425152	-	ribosomal L5 family protein	[J] COG0094 Ribosomal protein L5	gene	gene2232	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2241
CH54_2242	CH54_2242	rplX	rplX	2425167	2425481	-	ribosomal protein L24	rplX_bact: ribosomal protein L24~[J] COG0198 Ribosomal protein L24	gene	gene2233	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2242
CH54_2243	CH54_2243	rplN	rplN	2425492	2425863	-	ribosomal protein L14	rplN_bact: ribosomal protein L14~[J] COG0093 Ribosomal protein L14	gene	gene2234	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2243
CH54_2244	CH54_2244	rpsQ	rpsQ	2426044	2426298	-	30S ribosomal protein S17	S17_bact: 30S ribosomal protein S17~[J] COG0186 Ribosomal protein S17	gene	gene2235	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2244
CH54_2245	CH54_2245	rpmC	rpmC	2426298	2426489	-	ribosomal protein L29	L29: ribosomal protein L29~[J] COG0255 Ribosomal protein L29	gene	gene2236	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2245
CH54_2246	CH54_2246	rplP	rplP	2426489	2426899	-	ribosomal protein L16	rplP_bact: ribosomal protein L16~[J] COG0197 Ribosomal protein L16/L10E	gene	gene2237	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2246
CH54_2247	CH54_2247	rpsC	rpsC	2426912	2427610	-	ribosomal protein S3	rpsC_bact: ribosomal protein S3~[J] COG0092 Ribosomal protein S3	gene	gene2238	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2247
CH54_2248	CH54_2248	rplV	rplV	2427628	2427960	-	ribosomal protein L22	rplV_bact: ribosomal protein L22~[J] COG0091 Ribosomal protein L22	gene	gene2239	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2248
CH54_2249	CH54_2249	rpsS	rpsS	2427975	2428253	-	ribosomal protein S19	rpsS_bact: ribosomal protein S19~[J] COG0185 Ribosomal protein S19	gene	gene2240	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2249
CH54_225	CH54_225		CH54_225	234114	234662	-	hypothetical protein	conserved hypothetical protein~[R] COG1988 Predicted membrane-bound metal-dependent hydrolases	gene	gene223	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_225
CH54_2250	CH54_2250	rplB	rplB	2428268	2429092	-	ribosomal protein L2	rplB_bact: ribosomal protein L2~[J] COG0090 Ribosomal protein L2	gene	gene2241	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2250
CH54_2251	CH54_2251		CH54_2251	2429109	2429411	-	ribosomal L23 family protein	[J] COG0089 Ribosomal protein L23	gene	gene2242	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2251
CH54_2252	CH54_2252	rplD	rplD	2429408	2430013	-	50S ribosomal protein L4	rplD_bact: 50S ribosomal protein L4~[J] COG0088 Ribosomal protein L4	gene	gene2243	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2252
CH54_2253	CH54_2253	rplC	rplC	2430024	2430653	-	50S ribosomal protein L3	L3_bact: 50S ribosomal protein L3~[J] COG0087 Ribosomal protein L3	gene	gene2244	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2253
CH54_2254	CH54_2254	rpsJ	rpsJ	2430686	2430997	-	ribosomal protein S10	rpsJ_bact: ribosomal protein S10~[J] COG0051 Ribosomal protein S10	gene	gene2245	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2254
CH54_2255	CH54_2255	bfr	bfr	2431376	2431849	-	bacterioferritin	bfr: bacterioferritin~[P] COG2193 Bacterioferritin (cytochrome b1)	gene	gene2246	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2255
CH54_2256	CH54_2256		CH54_2256	2431928	2432122	-	BFD-like [2Fe-2S] binding domain protein	[P] COG2906 Bacterioferritin-associated ferredoxin	gene	gene2247	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2256
CH54_2257	CH54_2257	tuf	tuf	2432266	2433450	-	translation elongation factor Tu	EF-Tu: translation elongation factor Tu~[J] COG0050 GTPases - translation elongation factors	gene	gene2248	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2257
CH54_2258	CH54_2258	fusA	fusA	2433522	2435630	-	translation elongation factor G	EF-G: translation elongation factor G~[J] COG0480 Translation elongation factors (GTPases)	gene	gene2249	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2258
CH54_2259	CH54_2259	rpsG	rpsG	2435722	2436192	-	ribosomal protein S7	rpsG_bact: ribosomal protein S7~[J] COG0049 Ribosomal protein S7	gene	gene2250	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2259
CH54_226	CH54_226		CH54_226	235070	235768	-	outer membrane beta-barrel domain protein		gene	gene224	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_226
CH54_2260	CH54_2260	rpsL	rpsL	2436289	2436663	-	ribosomal protein S12	rpsL_bact: ribosomal protein S12~[J] COG0048 Ribosomal protein S12	gene	gene2251	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2260
CH54_2261	CH54_2261	dsrH	dsrH	2436801	2437088	-	sulfur relay protein TusB/DsrH	sulf_tusB_dsrH: sulfur relay protein TusB/DsrH~[P] COG2168 Uncharacterized conserved protein involved in oxidation of intracellular sulfur	gene	gene2252	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2261
CH54_2262	CH54_2262	tusC	tusC	2437108	2437482	-	sulfur relay protein TusC/DsrF	sulf_tusC_dsrF: sulfur relay protein TusC/DsrF~[P] COG2923 Uncharacterized protein involved in the oxidation of intracellular sulfur	gene	gene2253	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2262
CH54_2263	CH54_2263		CH54_2263	2437482	2437886	-	dsrE/DsrF-like family protein	[P] COG1553 Uncharacterized conserved protein involved in intracellular sulfur reduction	gene	gene2254	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2263
CH54_2264	CH54_2264		CH54_2264	2437886	2438608	-	sensory box protein	[S] COG2964 Uncharacterized protein conserved in bacteria	gene	gene2255	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2264
CH54_2265	CH54_2265		CH54_2265	2438872	2439687	-	domain amino terminal to FKBP-type peptidyl-prolyl isomerase family protein	[O] COG0545 FKBP-type peptidyl-prolyl cis-trans isomerases 1	gene	gene2256	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2265
CH54_2266	CH54_2266		CH54_2266	2439983	2440201	+	slyX family protein	[S] COG2900 Uncharacterized protein conserved in bacteria	gene	gene2257	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2266
CH54_2267	CH54_2267		CH54_2267	2440302	2440889	-	FKBP-type peptidyl-prolyl cis-trans isomerase family protein	[O] COG1047 FKBP-type peptidyl-prolyl cis-trans isomerases 2	gene	gene2258	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2267
CH54_2268	CH54_2268		CH54_2268	2440984	2441229	-	hypothetical protein	conserved hypothetical protein~[R] COG3529 Predicted nucleic-acid-binding protein containing a Zn-ribbon domain	gene	gene2259	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2268
CH54_2269	CH54_2269		CH54_2269	2441244	2443052	-	transporter%2C monovalent cation:proton antiporter-2 family protein	2a37: transporter%2C monovalent cation:proton antiporter-2 family protein~[P] COG0475 Kef-type K+ transport systems%2C membrane components	gene	gene2260	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2269
CH54_227	CH54_227		CH54_227	236074	237366	-	bacterial extracellular solute-binding family protein	[G] COG1653 ABC-type sugar transport system%2C periplasmic component	gene	gene225	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_227
CH54_2270	CH54_2270		CH54_2270	2443055	2443606	-	NADPH-dependent FMN reductase family protein	[R] COG2249 Putative NADPH-quinone reductase (modulator of drug activity B)	gene	gene2261	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2270
CH54_2271	CH54_2271		CH54_2271	2443731	2445647	+	miro-like family protein	[R] COG0488 ATPase components of ABC transporters with duplicated ATPase domains	gene	gene2262	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2271
CH54_2272	CH54_2272		CH54_2272	2446095	2446538	+	hypothetical protein	[M] COG0463 Glycosyltransferases involved in cell wall biogenesis	gene	gene2263	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2272
CH54_2273	CH54_2273		CH54_2273	2447615	2448466	-	taurine catabolism dioxygenase TauD%2C TfdA family protein	[Q] COG2175 Probable taurine catabolism dioxygenase	gene	gene2265	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2273
CH54_2274	CH54_2274		CH54_2274	2446624	2447667	+	glycosyltransferase 9 family protein	[M] COG0859 ADP-heptose:LPS heptosyltransferase	gene	gene2264	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2274
CH54_2275	CH54_2275		CH54_2275	2448463	2449389	-	binding--dependent transport system inner membrane component family protein	[P] COG0600 ABC-type nitrate/sulfonate/bicarbonate transport system%2C permease component	gene	gene2266	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2275
CH54_2276	CH54_2276		CH54_2276	2449386	2450153	-	ABC transporter family protein	[P] COG4525 ABC-type taurine transport system%2C ATPase component	gene	gene2267	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2276
CH54_2277	CH54_2277	tauA	tauA	2450162	2451220	-	taurine ABC transporter%2C periplasmic binding protein	taurine_ABC_bnd: taurine ABC transporter%2C periplasmic binding protein~[P] COG4521 ABC-type taurine transport system%2C periplasmic component	gene	gene2268	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2277
CH54_2278	CH54_2278		CH54_2278	2451405	2452187	-	phenazine biosynthesis%2C PhzF family protein	phzF_: phenazine biosynthesis%2C PhzF family protein~[R] COG0384 Predicted epimerase%2C PhzC/PhzF homolog	gene	gene2269	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2278
CH54_2279	CH54_2279		CH54_2279	2452393	2452995	-	lysE type translocator family protein	[E] COG1280 Putative threonine efflux protein	gene	gene2270	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2279
CH54_228	CH54_228		CH54_228	237382	238509	-	ABC transporter family protein	[G] COG3839 ABC-type sugar transport systems%2C ATPase components	gene	gene226	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_228
CH54_2280	CH54_2280		CH54_2280	2453079	2454095	+	alpha/beta hydrolase family protein	[R] COG0429 Predicted hydrolase of the alpha/beta-hydrolase fold	gene	gene2271	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2280
CH54_2281	CH54_2281		CH54_2281	2454092	2454328	+	hypothetical protein	conserved hypothetical protein~[S] COG3089 Uncharacterized protein conserved in bacteria	gene	gene2272	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2281
CH54_2282	CH54_2282		CH54_2282	2454493	2455362	+	phosphoribulokinase / Uridine kinase family protein	[C] COG3954 Phosphoribulokinase	gene	gene2273	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2282
CH54_2283	CH54_2283		CH54_2283	2455429	2455836	-	osmC-like family protein	[O] COG1765 Predicted redox protein%2C regulator of disulfide bond formation	gene	gene2274	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2283
CH54_2284	CH54_2284		CH54_2284	2456171	2456803	+	bacterial regulatory s%2C crp family protein	[T] COG0664 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases	gene	gene2275	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2284
CH54_2285	CH54_2285		CH54_2285	2457081	2459204	+	integral membrane%2C YccS/YhfK family protein	YCCS_YHJK: integral membrane%2C YccS/YhfK family protein~[S] COG1289 Predicted membrane protein	gene	gene2276	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2285
CH54_2286	CH54_2286	astC	astC	2459253	2460470	-	succinylornithine transaminase family protein	arg_catab_astC: succinylornithine transaminase family protein~[E] COG4992 Ornithine/acetylornithine aminotransferase	gene	gene2277	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2286
CH54_2287	CH54_2287		CH54_2287	2460603	2461178	-	glutamine amidotransferase of anthranilate synthase/aminodeoxychorismate synthase family protein	trpG_papA: glutamine amidotransferase of anthranilate synthase/aminodeoxychorismate synthase family protein~[EH] COG0512 Anthranilate/para-aminobenzoate synthases component II	gene	gene2278	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2287
CH54_2288	CH54_2288		CH54_2288	2461194	2462243	-	abi-like family protein		gene	gene2279	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2288
CH54_2289	CH54_2289		CH54_2289	2462555	2464066	-	type III restriction enzyme%2C res subunit	[R] COG0433 Predicted ATPase	gene	gene2280	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2289
CH54_229	CH54_229		CH54_229	238523	239443	-	binding--dependent transport system inner membrane component family protein	[G] COG0395 ABC-type sugar transport system%2C permease component	gene	gene227	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_229
CH54_2290	CH54_2290		CH54_2290	2464187	2464756	-	cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD family protein	[O] COG0652 Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family	gene	gene2281	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2290
CH54_2291	CH54_2291		CH54_2291	2465111	2466424	+	hypothetical protein	family 4 glycosyl hydrolase C-terminal domain protein~[G] COG1486 Alpha-galactosidases/6-phospho-beta-glucosidases%2C family 4 of glycosyl hydrolases	gene	gene2282	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2291
CH54_2292	CH54_2292		CH54_2292	2466508	2467488	+	helix-turn-helix family protein	[K] COG1609 Transcriptional regulators	gene	gene2283	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2292
CH54_2293	CH54_2293		CH54_2293	2467828	2469012	+	major Facilitator Superfamily protein	[GEPR] COG0477 Permeases of the major facilitator superfamily	gene	gene2284	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2293
CH54_2294	CH54_2294		CH54_2294	2469068	2470363	-	amidohydrolase family protein	[FR] COG0402 Cytosine deaminase and related metal-dependent hydrolases	gene	gene2285	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2294
CH54_2295	CH54_2295		CH54_2295	2470374	2470523	+	hypothetical protein	conserved hypothetical protein	gene	gene2286	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2295
CH54_2296	CH54_2296	nirB	nirB	2470646	2473192	+	nitrite reductase [NAD(P)H]%2C large subunit	nitri_red_nirB: nitrite reductase [NAD(P)H]%2C large subunit~[C] COG1251 NAD(P)H-nitrite reductase	gene	gene2287	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2296
CH54_2297	CH54_2297	nirD	nirD	2473189	2473515	+	nitrite reductase [NAD(P)H]%2C small subunit	nirD_assim_sml: nitrite reductase [NAD(P)H]%2C small subunit~[PR] COG2146 Ferredoxin subunits of nitrite reductase and ring-hydroxylating dioxygenases	gene	gene2288	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2297
CH54_2298	CH54_2298	fnt	fnt	2473636	2474442	+	formate/nitrite transporter family protein	fnt: formate/nitrite transporter family protein~[P] COG2116 Formate/nitrite family of transporters	gene	gene2289	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2298
CH54_2299	CH54_2299	cobA	cobA	2474637	2476055	+	uroporphyrinogen-III C-methyltransferase	cobA_cysG_Cterm: uroporphyrinogen-III C-methyltransferase~[H] COG0007 Uroporphyrinogen-III methylase	gene	gene2290	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2299
CH54_23	CH54_23		CH54_23	22982	24166	-	met-10+ like-family protein	[R] COG1092 Predicted SAM-dependent methyltransferases	gene	gene22	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_23
CH54_230	CH54_230		CH54_230	239436	240326	-	binding--dependent transport system inner membrane component family protein	[G] COG1175 ABC-type sugar transport systems%2C permease components	gene	gene228	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_230
CH54_2300	CH54_2300	trpS	trpS	2476115	2477155	-	tryptophan--tRNA ligase	trpS: tryptophan--tRNA ligase~[J] COG0180 Tryptophanyl-tRNA synthetase	gene	gene2291	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2300
CH54_2301	CH54_2301	gph	gph	2477157	2477855	-	phosphoglycolate phosphatase	PGP_bact: phosphoglycolate phosphatase%2C bacterial~[R] COG0546 Predicted phosphatases	gene	gene2292	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2301
CH54_2302	CH54_2302	rpe	rpe	2477848	2478525	-	ribulose-phosphate 3-epimerase	rpe: ribulose-phosphate 3-epimerase~[G] COG0036 Pentose-5-phosphate-3-epimerase	gene	gene2293	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2302
CH54_2303	CH54_2303	dam	dam	2478627	2479439	-	DNA adenine methylase family protein	dam: DNA adenine methylase family protein~[L] COG0338 Site-specific DNA methylase	gene	gene2294	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2303
CH54_2304	CH54_2304		CH54_2304	2479523	2480536	-	sporulation related domain protein	[S] COG3266 Uncharacterized protein conserved in bacteria	gene	gene2295	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2304
CH54_2305	CH54_2305	aroB	aroB	2480670	2481755	-	3-dehydroquinate synthase	aroB: 3-dehydroquinate synthase~[E] COG0337 3-dehydroquinate synthetase	gene	gene2296	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2305
CH54_2306	CH54_2306		CH54_2306	2481811	2482332	-	ATPase associated with various cellular activities family protein	[E] COG0703 Shikimate kinase	gene	gene2297	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2306
CH54_2307	CH54_2307	pilQ	pilQ	2482680	2484017	-	type IV pilus secretin PilQ family protein	IV_pilus_PilQ: type IV pilus secretin PilQ family protein~[U] COG4796 Type II secretory pathway%2C component HofQ	gene	gene2298	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2307
CH54_2308	CH54_2308		CH54_2308	2484053	2484385	-	hypothetical protein	conserved hypothetical protein	gene	gene2299	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2308
CH54_2309	CH54_2309		CH54_2309	2484423	2485058	-	hypothetical protein	conserved hypothetical protein	gene	gene2300	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2309
CH54_231	CH54_231		CH54_231	240367	242040	-	periplasmic pectate lyase family protein		gene	gene229	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_231
CH54_2310	CH54_2310		CH54_2310	2485048	2485596	-	fimbrial assembly family protein	[NU] COG3166 Tfp pilus assembly protein PilN	gene	gene2301	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2310
CH54_2311	CH54_2311		CH54_2311	2485596	2486486	-	hypothetical protein		gene	gene2302	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2311
CH54_2312	CH54_2312		CH54_2312	2486606	2489161	+	penicillin-binding%2C 1A family protein	PBP_1a_fam: penicillin-binding%2C 1A family protein~[M] COG5009 Membrane carboxypeptidase/penicillin-binding protein	gene	gene2303	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2312
CH54_2313	CH54_2313		CH54_2313	2489268	2489825	-	NUDIX domain protein	[LR] COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes	gene	gene2304	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2313
CH54_2314	CH54_2314		CH54_2314	2490317	2492575	+	intracellular growth attenuator IgaA family protein		gene	gene2305	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2314
CH54_2315	CH54_2315		CH54_2315	2492701	2493378	+	HAD hydrolase%2C IA%2C variant 3 family protein	HAD-SF-IA-v3: HAD hydrolase%2C IA%2C variant 3 family protein~[R] COG1011 Predicted hydrolase (HAD superfamily)	gene	gene2306	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2315
CH54_2316	CH54_2316		CH54_2316	2493412	2493819	+	S4 domain protein	[J] COG1188 Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog)	gene	gene2307	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2316
CH54_2317	CH54_2317		CH54_2317	2493849	2494763	+	hsp33 family protein	[O] COG1281 Disulfide bond chaperones of the HSP33 family	gene	gene2308	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2317
CH54_2318	CH54_2318	pckA	pckA	2494963	2496582	+	phosphoenolpyruvate carboxykinase	pckA: phosphoenolpyruvate carboxykinase~[C] COG1866 Phosphoenolpyruvate carboxykinase (ATP)	gene	gene2309	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2318
CH54_2319	CH54_2319		CH54_2319	2496821	2498173	-	HAMP domain protein	[T] COG0642 Signal transduction histidine kinase	gene	gene2310	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2319
CH54_232	CH54_232	kduD	kduD	242363	243124	-	2-deoxy-D-gluconate 3-dehydrogenase	kduD: 2-deoxy-D-gluconate 3-dehydrogenase~[IQR] COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)	gene	gene230	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_232
CH54_2320	CH54_2320		CH54_2320	2498170	2498889	-	hypothetical protein	transcriptional regulatory%2C C terminal family protein~[TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain	gene	gene2311	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2320
CH54_2321	CH54_2321	greB	greB	2499135	2499632	-	transcription elongation factor GreB	greB: transcription elongation factor GreB~[K] COG0782 Transcription elongation factor	gene	gene2312	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2321
CH54_2322	CH54_2322		CH54_2322	2500062	2501072	+	hypothetical protein		gene	gene2313	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2322
CH54_2323	CH54_2323		CH54_2323	2501097	2501927	+	hypothetical protein	conserved hypothetical protein	gene	gene2314	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2323
CH54_2324	CH54_2324		CH54_2324	2501965	2502945	+	hypothetical protein	conserved hypothetical protein	gene	gene2315	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2324
CH54_2325	CH54_2325		CH54_2325	2502957	2504147	+	major Facilitator Superfamily protein		gene	gene2316	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2325
CH54_2326	CH54_2326		CH54_2326	2504187	2506553	+	S1 RNA binding domain protein	[K] COG2183 Transcriptional accessory protein	gene	gene2317	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2326
CH54_2327	CH54_2327		CH54_2327	2507263	2507487	+	feoA domain protein	[P] COG1918 Fe2+ transport system protein A	gene	gene2318	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2327
CH54_2328	CH54_2328	feoB	feoB	2507622	2509940	+	ferrous iron transport protein B	feoB: ferrous iron transport protein B~[P] COG0370 Fe2+ transport system protein B	gene	gene2319	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2328
CH54_2329	CH54_2329		CH54_2329	2509953	2510195	+	feoC like transcriptional regulator family protein		gene	gene2320	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2329
CH54_233	CH54_233		CH54_233	243235	244071	-	kduI/IolB family protein	[G] COG3717 5-keto 4-deoxyuronate isomerase	gene	gene231	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_233
CH54_2330	CH54_2330		CH54_2330	2510239	2510502	-	hypothetical protein	conserved hypothetical protein	gene	gene2321	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2330
CH54_2331	CH54_2331	bioH	bioH	2510680	2511456	-	pimelyl-[acyl-carrier protein] methyl ester esterase	bioH: pimelyl-[acyl-carrier protein] methyl ester esterase~[R] COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily)	gene	gene2322	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2331
CH54_2332	CH54_2332		CH54_2332	2511503	2512186	+	hypothetical protein	[R] COG1040 Predicted amidophosphoribosyltransferases	gene	gene2323	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2332
CH54_2333	CH54_2333		CH54_2333	2512246	2512821	+	nifU-like domain protein	[O] COG0694 Thioredoxin-like proteins and domains	gene	gene2324	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2333
CH54_2334	CH54_2334	malQ	malQ	2513176	2515272	-	4-alpha-glucanotransferase	malQ: 4-alpha-glucanotransferase~[G] COG1640 4-alpha-glucanotransferase	gene	gene2325	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2334
CH54_2335	CH54_2335	glgP	glgP	2515285	2517690	-	glycogen/starch/alpha-glucan phosphorylases family protein	P_ylase: glycogen/starch/alpha-glucan phosphorylases family protein~[G] COG0058 Glucan phosphorylase	gene	gene2326	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2335
CH54_2336	CH54_2336		CH54_2336	2518010	2520721	+	bacterial regulatory s%2C luxR family protein	[K] COG2909 ATP-dependent transcriptional regulator	gene	gene2327	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2336
CH54_2337	CH54_2337		CH54_2337	2520956	2521285	+	rhodanese-like domain protein	[P] COG0607 Rhodanese-related sulfurtransferase	gene	gene2328	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2337
CH54_2338	CH54_2338	glpG	glpG	2521385	2522221	+	rhomboid family protease GlpG	rhombo_GlpG: rhomboid family protease GlpG~[R] COG0705 Uncharacterized membrane protein (homolog of Drosophila rhomboid)	gene	gene2329	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2338
CH54_2339	CH54_2339		CH54_2339	2522257	2523015	+	deoR-like helix-turn-helix domain protein	[KG] COG1349 Transcriptional regulators of sugar metabolism	gene	gene2330	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2339
CH54_234	CH54_234		CH54_234	244304	244636	+	cupin domain protein	[S] COG1917 Uncharacterized conserved protein%2C contains double-stranded beta-helix domain	gene	gene232	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_234
CH54_2340	CH54_2340		CH54_2340	2523355	2523474	+	hypothetical protein	conserved hypothetical protein	gene	gene2331	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2340
CH54_2341	CH54_2341		CH54_2341	2523597	2523812	-	hypothetical protein		gene	gene2332	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2341
CH54_2342	CH54_2342		CH54_2342	2523864	2525378	+	FAD dependent oxidoreductase family protein	[C] COG0578 Glycerol-3-phosphate dehydrogenase	gene	gene2333	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2342
CH54_2343	CH54_2343	glgP	glgP	2525465	2527912	-	glycogen/starch/alpha-glucan phosphorylases family protein	P_ylase: glycogen/starch/alpha-glucan phosphorylases family protein~[G] COG0058 Glucan phosphorylase	gene	gene2334	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2343
CH54_2344	CH54_2344	glgA	glgA	2527951	2529381	-	glycogen/starch synthase%2C ADP-glucose type family protein	glgA: glycogen/starch synthase%2C ADP-glucose type family protein~[G] COG0297 Glycogen synthase	gene	gene2335	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2344
CH54_2345	CH54_2345	glgC	glgC	2529390	2530676	-	glucose-1-phosphate adenylyltransferase	glgC: glucose-1-phosphate adenylyltransferase~[G] COG0448 ADP-glucose pyrophosphorylase	gene	gene2336	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2345
CH54_2346	CH54_2346	glgX	glgX	2530686	2532674	-	glycogen debranching enzyme GlgX	glgX_debranch: glycogen debranching enzyme GlgX~[G] COG1523 Type II secretory pathway%2C pullulanase PulA and related glycosidases	gene	gene2337	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2346
CH54_2347	CH54_2347	glgB	glgB	2532676	2534859	-	1%2C4-alpha-glucan branching enzyme	branching_enzym: 1%2C4-alpha-glucan branching enzyme~[G] COG0296 1%2C4-alpha-glucan branching enzyme	gene	gene2338	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2347
CH54_2348	CH54_2348		CH54_2348	2535352	2537046	+	histidine kinase family protein	[T] COG3275 Putative regulator of cell autolysis	gene	gene2339	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2348
CH54_2349	CH54_2349		CH54_2349	2537069	2539168	-	ABC transporter family protein	[V] COG2274 ABC-type bacteriocin/lantibiotic exporters%2C contain an N-terminal double-glycine peptidase domain	gene	gene2340	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2349
CH54_235	CH54_235		CH54_235	244706	245371	-	HAD hydrolase%2C IA%2C variant 1 family protein	HAD-SF-IA-v1: HAD hydrolase%2C IA%2C variant 1 family protein~[R] COG0637 Predicted phosphatase/phosphohexomutase	gene	gene233	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_235
CH54_2350	CH54_2350		CH54_2350	2539161	2540438	-	hlyD secretion family protein	[M] COG0845 Membrane-fusion protein	gene	gene2341	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2350
CH54_2351	CH54_2351		CH54_2351	2540562	2540885	-	hypothetical protein		gene	gene2342	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2351
CH54_2352	CH54_2352		CH54_2352	2540924	2541160	-	putative membrane protein		gene	gene2343	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2352
CH54_2353	CH54_2353		CH54_2353	2541189	2542463	-	glycosyltransferase like 2 family protein	[M] COG0463 Glycosyltransferases involved in cell wall biogenesis	gene	gene2344	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2353
CH54_2354	CH54_2354		CH54_2354	2542615	2542821	-	hypothetical protein		gene	gene2345	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2354
CH54_2355	CH54_2355		CH54_2355	2542835	2543179	-	hypothetical protein		gene	gene2346	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2355
CH54_2356	CH54_2356	asd	asd	2543492	2544595	-	aspartate-semialdehyde dehydrogenase	asd_gamma: aspartate-semialdehyde dehydrogenase~[E] COG0136 Aspartate-semialdehyde dehydrogenase	gene	gene2347	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2356
CH54_2357	CH54_2357		CH54_2357	2544821	2545414	+	marC integral membrane family protein	[U] COG2095 Multiple antibiotic transporter	gene	gene2348	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2357
CH54_2358	CH54_2358		CH54_2358	2545631	2546143	-	carbohydrate kinase%2C thermoresistant glucokinase family protein	therm_gnt_kin: carbohydrate kinase%2C thermoresistant glucokinase family protein~[G] COG3265 Gluconate kinase	gene	gene2349	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2358
CH54_2359	CH54_2359		CH54_2359	2546365	2547681	+	transporter%2C gluconate:H+ symporter family protein	gntP: transporter%2C gluconate:H+ symporter family protein~[GE] COG2610 H+/gluconate symporter and related permeases	gene	gene2350	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2359
CH54_236	CH54_236		CH54_236	245621	246175	+	yniB-like family protein		gene	gene234	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_236
CH54_2360	CH54_2360		CH54_2360	2547695	2548690	-	bacterial regulatory s%2C lacI family protein	[K] COG1609 Transcriptional regulators	gene	gene2351	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2360
CH54_2361	CH54_2361		CH54_2361	2548786	2549481	-	pirin family protein	[R] COG1741 Pirin-related protein	gene	gene2352	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2361
CH54_2362	CH54_2362		CH54_2362	2549933	2550433	+	acetyltransferase domain protein	[KR] COG0454 Histone acetyltransferase HPA2 and related acetyltransferases	gene	gene2353	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2362
CH54_2363	CH54_2363	iolE	iolE	2550536	2551432	-	myo-inosose-2 dehydratase	myo_inos_iolE: myo-inosose-2 dehydratase~[G] COG1082 Sugar phosphate isomerases/epimerases	gene	gene2354	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2363
CH54_2364	CH54_2364		CH54_2364	2551568	2552452	-	xylose isomerase-like TIM barrel family protein	[G] COG1082 Sugar phosphate isomerases/epimerases	gene	gene2355	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2364
CH54_2365	CH54_2365		CH54_2365	2552565	2553578	-	hypothetical protein	oxidoreductase family%2C C-terminal alpha/beta domain protein~[R] COG0673 Predicted dehydrogenases and related proteins	gene	gene2356	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2365
CH54_2366	CH54_2366	iolD	iolD	2553681	2555621	-	3%2C5/4-trihydroxycyclohexa-1%2C2-dione hydrolase	myo_inos_iolD: 3%2C5/4-trihydroxycyclohexa-1%2C2-dione hydrolase~[E] COG3962 Acetolactate synthase	gene	gene2357	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2366
CH54_2367	CH54_2367	iolC	iolC	2556172	2558091	+	5-dehydro-2-deoxygluconokinase	myo_inos_iolC_N: 5-dehydro-2-deoxygluconokinase~[G] COG0524 Sugar kinases%2C ribokinase family	gene	gene2358	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2367
CH54_2368	CH54_2368		CH54_2368	2558376	2559209	+	SIS domain protein	[K] COG1737 Transcriptional regulators	gene	gene2359	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2368
CH54_2369	CH54_2369	iolB	iolB	2559319	2560143	-	5-deoxy-glucuronate isomerase	myo_inos_iolB: 5-deoxy-glucuronate isomerase~[G] COG3718 Uncharacterized enzyme involved in inositol metabolism	gene	gene2360	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2369
CH54_237	CH54_237		CH54_237	246308	247177	-	fructosamine kinase family protein	[G] COG3001 Fructosamine-3-kinase	gene	gene235	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_237
CH54_2370	CH54_2370	mmsA	mmsA	2560199	2561704	-	methylmalonate-semialdehyde dehydrogenase	MMSDH: methylmalonate-semialdehyde dehydrogenase~[C] COG1012 NAD-dependent aldehyde dehydrogenases	gene	gene2361	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2370
CH54_2371	CH54_2371		CH54_2371	2562310	2563146	+	xylose isomerase-like TIM barrel family protein	[G] COG4130 Predicted sugar epimerase	gene	gene2362	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2371
CH54_2372	CH54_2372		CH54_2372	2563343	2565078	-		ABC transporter family protein	pseudogene	gene2363	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2372
CH54_2374	CH54_2374		CH54_2374	2565591	2566592	-	fimbrial family protein	[NU] COG3539 P pilus assembly protein%2C pilin FimA	gene	gene2364	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2374
CH54_2375	CH54_2375		CH54_2375	2566589	2567113	-	fimbrial family protein	[NU] COG3539 P pilus assembly protein%2C pilin FimA	gene	gene2365	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2375
CH54_2376	CH54_2376		CH54_2376	2567104	2569638	-	hypothetical protein	papC N-terminal domain protein~[NU] COG3188 P pilus assembly protein%2C porin PapC	gene	gene2366	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2376
CH54_2377	CH54_2377		CH54_2377	2569685	2570371	-	hypothetical protein	pili and flagellar-assembly chaperone%2C PapD N-terminal domain protein~[NU] COG3121 P pilus assembly protein%2C chaperone PapD	gene	gene2367	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2377
CH54_2378	CH54_2378		CH54_2378	2570433	2570993	-	fimbrial family protein	[NU] COG3539 P pilus assembly protein%2C pilin FimA	gene	gene2368	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2378
CH54_2379	CH54_2379		CH54_2379	2571356	2571751	-	hypothetical protein	transcriptional regulatory%2C C terminal family protein~[K] COG3710 DNA-binding winged-HTH domains	gene	gene2369	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2379
CH54_238	CH54_238		CH54_238	247500	248393	-	ABC 3 transport family protein	[P] COG1108 ABC-type Mn2+/Zn2+ transport systems%2C permease components	gene	gene236	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_238
CH54_2380	CH54_2380		CH54_2380	2572484	2573320	+	hypothetical protein	transcriptional regulatory%2C C terminal family protein~[K] COG3710 DNA-binding winged-HTH domains	gene	gene2370	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2380
CH54_2381	CH54_2381		CH54_2381	2573310	2573771	+	hypothetical protein	conserved hypothetical protein	gene	gene2371	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2381
CH54_2382	CH54_2382		CH54_2382	2573907	2575106	-	flavo%2C family protein	flavo%2C HI0933 family protein~[R] COG2081 Predicted flavoproteins	gene	gene2372	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2382
CH54_2383	CH54_2383		CH54_2383	2575288	2576913	+	phosphate transporter family protein	[P] COG0306 Phosphate/sulphate permeases	gene	gene2373	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2383
CH54_2384	CH54_2384		CH54_2384	2577005	2577340	-	universal stress B family protein		gene	gene2374	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2384
CH54_2385	CH54_2385		CH54_2385	2578032	2578478	+	universal stress family protein	[T] COG0589 Universal stress protein UspA and related nucleotide-binding proteins	gene	gene2375	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2385
CH54_2386	CH54_2386		CH54_2386	2580020	2580190	-	hypothetical protein		gene	gene2377	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2386
CH54_2387	CH54_2387		CH54_2387	2578743	2580086	+	glu/Leu/Phe/Val dehydrogenase%2C dimerization domain protein	[E] COG0334 Glutamate dehydrogenase/leucine dehydrogenase	gene	gene2376	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2387
CH54_2388	CH54_2388		CH54_2388	2580306	2581619	+	hypothetical protein	T1SS_VCA0849: type I secretion C-terminal target domain protein~[Q] COG2931 RTX toxins and related Ca2+-binding proteins	gene	gene2378	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2388
CH54_2389	CH54_2389		CH54_2389	2581815	2582573	-	SAM-dependent methyltransferase family protein	[QR] COG0500 SAM-dependent methyltransferases	gene	gene2379	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2389
CH54_239	CH54_239		CH54_239	248390	249274	-	ABC 3 transport family protein	[P] COG1108 ABC-type Mn2+/Zn2+ transport systems%2C permease components	gene	gene237	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_239
CH54_2390	CH54_2390		CH54_2390	2582577	2584619	-	peptidase M3 family protein	[E] COG0339 Zn-dependent oligopeptidases	gene	gene2380	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2390
CH54_2391	CH54_2391		CH54_2391	2584955	2585797	+	hypothetical protein	conserved hypothetical 95 family protein~[R] COG2961 Protein involved in catabolism of external DNA	gene	gene2381	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2391
CH54_2392	CH54_2392	gor	gor	2586033	2587385	+	glutathione-disulfide reductase	gluta_reduc_1: glutathione-disulfide reductase~[C] COG1249 Pyruvate/2-oxoglutarate dehydrogenase complex%2C dihydrolipoamide dehydrogenase (E3) component%2C and related enzymes	gene	gene2382	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2392
CH54_2393	CH54_2393		CH54_2393	2587620	2587718	+	inner membrane yhjD domain protein		gene	gene2383	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2393
CH54_2394	CH54_2394	yhjD	yhjD	2587715	2588629	+	inner membrane protein YhjD	[S] COG1295 Predicted membrane protein	gene	gene2384	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2394
CH54_2395	CH54_2395		CH54_2395	2588748	2589518	+	CDP-diacylglycerol pyrophosphatase family protein	[I] COG2134 CDP-diacylglycerol pyrophosphatase	gene	gene2385	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2395
CH54_2396	CH54_2396		CH54_2396	2589523	2591652	-	asmA family protein	[M] COG2982 Uncharacterized protein involved in outer membrane biogenesis	gene	gene2386	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2396
CH54_2397	CH54_2397		CH54_2397	2591769	2592560	-	EAL domain protein	[T] COG2200 FOG: EAL domain	gene	gene2387	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2397
CH54_2398	CH54_2398	dmpI	dmpI	2592779	2592979	+	4-oxalocrotonate tautomerase enzyme family protein	taut: 4-oxalocrotonate tautomerase enzyme family protein~[R] COG1942 Uncharacterized protein%2C 4-oxalocrotonate tautomerase homolog	gene	gene2388	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2398
CH54_2399	CH54_2399		CH54_2399	2593187	2594131	+	pfkB carbohydrate kinase family protein	[G] COG0524 Sugar kinases%2C ribokinase family	gene	gene2389	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2399
CH54_24	CH54_24		CH54_24	24464	24673	+	hypothetical protein		gene	gene23	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_24
CH54_240	CH54_240		CH54_240	249274	250164	-	ABC transporter family protein	[P] COG1121 ABC-type Mn/Zn transport systems%2C ATPase component	gene	gene238	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_240
CH54_2400	CH54_2400		CH54_2400	2594250	2595752	-	insulinase family protein	[R] COG0612 Predicted Zn-dependent peptidases	gene	gene2390	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2400
CH54_2401	CH54_2401		CH54_2401	2596157	2597452	-	dicarboxylate symporter family protein	sodium:dicarboxylate symporter family protein~[C] COG1301 Na+/H+-dicarboxylate symporters	gene	gene2391	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2401
CH54_2402	CH54_2402		CH54_2402	2597924	2599642	-	periplasmic pectate lyase family protein		gene	gene2392	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2402
CH54_2403	CH54_2403		CH54_2403	2599719	2600423	-	outer membrane beta-barrel domain protein		gene	gene2393	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2403
CH54_2404	CH54_2404		CH54_2404	2600931	2602466	-	HAMP domain protein	[T] COG2200 FOG: EAL domain	gene	gene2394	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2404
CH54_2405	CH54_2405		CH54_2405	2602691	2606173	-	tetratricopeptide repeat family protein	[R] COG0457 FOG: TPR repeat	gene	gene2395	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2405
CH54_2406	CH54_2406		CH54_2406	2606155	2607279	-	glycosyl hydrolases 8 family protein	[G] COG3405 Endoglucanase Y	gene	gene2396	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2406
CH54_2407	CH54_2407		CH54_2407	2607285	2609591	-	bacterial cellulose synthase subunit		gene	gene2397	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2407
CH54_2408	CH54_2408	bcsA	bcsA	2609599	2612226	-	cellulose synthase catalytic subunit	celA: cellulose synthase catalytic subunit~[M] COG1215 Glycosyltransferases%2C probably involved in cell wall biogenesis	gene	gene2398	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2408
CH54_2409	CH54_2409	yhjQ	yhjQ	2612223	2612960	-	cellulose synthase operon protein YhjQ	cellulose_yhjQ: cellulose synthase operon protein YhjQ~[D] COG1192 ATPases involved in chromosome partitioning	gene	gene2399	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2409
CH54_241	CH54_241		CH54_241	250161	251129	-	periplasmic solute binding family protein	[P] COG0803 ABC-type metal ion transport system%2C periplasmic component/surface adhesin	gene	gene239	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_241
CH54_2410	CH54_2410		CH54_2410	2612964	2613155	-	hypothetical protein	conserved hypothetical protein	gene	gene2400	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2410
CH54_2411	CH54_2411	bcsE	bcsE	2613351	2614919	+	cellulose biosynthesis protein BcsE	cellulose_bcsE: cellulose biosynthesis protein BcsE	gene	gene2401	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2411
CH54_2412	CH54_2412	bcsF	bcsF	2614906	2615100	+	celllulose biosynthesis operon protein BcsF/YhjT	cellullose_BcsF: celllulose biosynthesis operon protein BcsF/YhjT	gene	gene2402	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2412
CH54_2413	CH54_2413		CH54_2413	2615097	2616749	+	hypothetical protein	conserved hypothetical protein	gene	gene2403	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2413
CH54_2414	CH54_2414		CH54_2414	2617044	2618066	-	hypothetical protein	oligo_HPY: oligopeptide/dipeptide ABC transporter%2C ATP-binding%2C C-terminal domain protein~[E] COG4608 ABC-type oligopeptide transport system%2C ATPase component	gene	gene2404	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2414
CH54_2415	CH54_2415		CH54_2415	2618063	2619043	-	hypothetical protein	oligo_HPY: oligopeptide/dipeptide ABC transporter%2C ATP-binding%2C C-terminal domain protein~[EP] COG0444 ABC-type dipeptide/oligopeptide/nickel transport system%2C ATPase component	gene	gene2405	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2415
CH54_2416	CH54_2416		CH54_2416	2619059	2619961	-	binding--dependent transport system inner membrane component family protein	[EP] COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems%2C permease components	gene	gene2406	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2416
CH54_2417	CH54_2417		CH54_2417	2619972	2620991	-	binding--dependent transport system inner membrane component family protein	[EP] COG0601 ABC-type dipeptide/oligopeptide/nickel transport systems%2C permease components	gene	gene2407	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2417
CH54_2418	CH54_2418		CH54_2418	2621296	2622903	-	bacterial extracellular solute-binding s%2C 5 Middle family protein	[E] COG0747 ABC-type dipeptide transport system%2C periplasmic component	gene	gene2408	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2418
CH54_2419	CH54_2419		CH54_2419	2623570	2624979	-	hypothetical protein	adhes_NPXG: filamentous hemagglutinin family N-terminal domain protein~[U] COG3210 Large exoproteins involved in heme utilization or adhesion	gene	gene2409	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2419
CH54_242	CH54_242		CH54_242	251341	252003	+	transglycosylase SLT domain protein	[M] COG0741 Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains)	gene	gene240	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_242
CH54_2420	CH54_2420		CH54_2420	2625101	2626813	-	hemolysin secretion/activation ShlB/FhaC/HecB family protein	[U] COG2831 Hemolysin activation/secretion protein	gene	gene2410	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2420
CH54_2421	CH54_2421		CH54_2421	2626943	2628205	-	hypothetical protein	adhes_NPXG: filamentous hemagglutinin family N-terminal domain protein~[U] COG3210 Large exoproteins involved in heme utilization or adhesion	gene	gene2411	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2421
CH54_2422	CH54_2422		CH54_2422	2628529	2628605	-	tRNA-Pro		tRNA	gene2412	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2422
CH54_2424	CH54_2424		CH54_2424	2628700	2630064	-	phosphoglycerate transporter family protein	2A0104: phosphoglycerate transporter family protein~[G] COG2271 Sugar phosphate permease	gene	gene2413	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2424
CH54_2425	CH54_2425		CH54_2425	2630125	2631654	-	histidine kinase family protein	[T] COG3851 Signal transduction histidine kinase%2C glucose-6-phosphate specific	gene	gene2414	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2425
CH54_2426	CH54_2426		CH54_2426	2631651	2632241	-	bacterial regulatory s%2C luxR family protein	[TK] COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain	gene	gene2415	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2426
CH54_2427	CH54_2427		CH54_2427	2632342	2634030	-	hypothetical protein	conserved hypothetical protein~[R] COG2194 Predicted membrane-associated%2C metal-dependent hydrolase	gene	gene2416	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2427
CH54_2428	CH54_2428		CH54_2428	2634289	2634714	-	peroxiredoxin%2C Ohr subfamily protein	organ_hyd_perox: peroxiredoxin%2C Ohr subfamily protein~[O] COG1764 Predicted redox protein%2C regulator of disulfide bond formation	gene	gene2417	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2428
CH54_2429	CH54_2429		CH54_2429	2634850	2636313	-	alpha/beta hydrolase family protein	[I] COG2267 Lysophospholipase	gene	gene2418	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2429
CH54_243	CH54_243		CH54_243	252084	252767	-	marC integral membrane family protein	[U] COG2095 Multiple antibiotic transporter	gene	gene241	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_243
CH54_2430	CH54_2430		CH54_2430	2636580	2637137	+	hypothetical protein	conserved hypothetical protein~[S] COG4420 Predicted membrane protein	gene	gene2419	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2430
CH54_2431	CH54_2431		CH54_2431	2637199	2638596	-	amino acid permease family protein	[E] COG1113 Gamma-aminobutyrate permease and related permeases	gene	gene2420	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2431
CH54_2432	CH54_2432	hutH	hutH	2638720	2640255	-	histidine ammonia-lyase	hutH: histidine ammonia-lyase~[E] COG2986 Histidine ammonia-lyase	gene	gene2421	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2432
CH54_2433	CH54_2433	hutU	hutU	2640252	2641943	-	urocanate hydratase	hutU: urocanate hydratase~[E] COG2987 Urocanate hydratase	gene	gene2422	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2433
CH54_2434	CH54_2434		CH54_2434	2642363	2642692	+	bacterial regulatory s%2C lacI family protein	[K] COG1609 Transcriptional regulators	gene	gene2423	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2434
CH54_2435	CH54_2435		CH54_2435	2642667	2642957	+	putative membrane protein	[G] COG0738 Fucose permease	gene	gene2424	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2435
CH54_2436	CH54_2436		CH54_2436	2643086	2643559	-	acetyltransferase domain protein	[KR] COG0454 Histone acetyltransferase HPA2 and related acetyltransferases	gene	gene2425	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2436
CH54_2437	CH54_2437		CH54_2437	2644773	2645186	+	response regulator	[TK] COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain	gene	gene2426	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2437
CH54_2438	CH54_2438		CH54_2438	2645206	2649204	+	bacterial regulatory s%2C luxR family protein	[T] COG0642 Signal transduction histidine kinase	gene	gene2427	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2438
CH54_2439	CH54_2439		CH54_2439	2649594	2649684	-	tRNA-Sec	tRNA-SeC(p)	tRNA	gene2428	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2439
CH54_244	CH54_244		CH54_244	253201	253452	+	hypothetical protein	conserved hypothetical protein	gene	gene242	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_244
CH54_2440	CH54_2440		CH54_2440	2649816	2651009	-	helix-turn-helix domain protein	[K] COG1609 Transcriptional regulators	gene	gene2429	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2440
CH54_2441	CH54_2441		CH54_2441	2651098	2652282	-	branched-chain amino acid transport system / permease component family protein	[G] COG4214 ABC-type xylose transport system%2C permease component	gene	gene2430	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2441
CH54_2442	CH54_2442	ccmA	ccmA	2652269	2653801	-	heme ABC exporter%2C ATP-binding protein CcmA	ccmA: heme ABC exporter%2C ATP-binding protein CcmA~[G] COG1129 ABC-type sugar transport system%2C ATPase component	gene	gene2431	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2442
CH54_2443	CH54_2443	xylF	xylF	2653893	2654888	-	D-xylose ABC transporter%2C D-xylose-binding protein	xylF: D-xylose ABC transporter%2C D-xylose-binding protein~[G] COG4213 ABC-type xylose transport system%2C periplasmic component	gene	gene2432	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2443
CH54_2444	CH54_2444	xylA	xylA	2655267	2656586	+	xylose isomerase	xylose_isom_A: xylose isomerase~[G] COG2115 Xylose isomerase	gene	gene2433	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2444
CH54_2445	CH54_2445	xylB	xylB	2656782	2658236	+	xylulokinase	xylB: xylulokinase~[G] COG1070 Sugar (pentulose and hexulose) kinases	gene	gene2434	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2445
CH54_2446	CH54_2446		CH54_2446	2658297	2659061	-	hypothetical protein	pili and flagellar-assembly chaperone%2C PapD N-terminal domain protein~[NU] COG3121 P pilus assembly protein%2C chaperone PapD	gene	gene2435	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2446
CH54_2447	CH54_2447		CH54_2447	2659293	2659853	+	isochorismatase family protein	[Q] COG1335 Amidases related to nicotinamidase	gene	gene2436	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2447
CH54_2448	CH54_2448		CH54_2448	2660844	2661836	-	acyltransferase family protein	[S] COG3274 Uncharacterized protein conserved in bacteria	gene	gene2438	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2448
CH54_2449	CH54_2449		CH54_2449	2659925	2660851	+	helix-turn-helix domain protein	[K] COG4977 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain	gene	gene2437	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2449
CH54_245	CH54_245		CH54_245	253550	253888	+	snoaL-like domain protein	[S] COG4538 Uncharacterized conserved protein	gene	gene243	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_245
CH54_2450	CH54_2450		CH54_2450	2663305	2663985	-	hypothetical protein	hipA-like C-terminal domain protein~[R] COG3550 Uncharacterized protein related to capsule biosynthesis enzymes	gene	gene2440	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2450
CH54_2451	CH54_2451		CH54_2451	2662103	2663332	+	sugar (and other) transporter family protein	[GEPR] COG0477 Permeases of the major facilitator superfamily	gene	gene2439	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2451
CH54_2452	CH54_2452		CH54_2452	2663987	2664076	-	hypothetical protein	conserved hypothetical protein	gene	gene2441	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2452
CH54_2453	CH54_2453		CH54_2453	2664110	2664391	-	helix-turn-helix family protein	[K] COG1396 Predicted transcriptional regulators	gene	gene2442	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2453
CH54_2454	CH54_2454	selB	selB	2664466	2666358	-	selenocysteine-specific translation elongation factor	selB: selenocysteine-specific translation elongation factor~[J] COG3276 Selenocysteine-specific translation elongation factor	gene	gene2443	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2454
CH54_2455	CH54_2455	selA	selA	2666355	2667743	-	L-seryl-tRNA(Sec) selenium transferase	selA: L-seryl-tRNA(Sec) selenium transferase~[E] COG1921 Selenocysteine synthase [seryl-tRNASer selenium transferase]	gene	gene2444	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2455
CH54_2456	CH54_2456	fdhE	fdhE	2667857	2668786	-	formate dehydrogenase accessory protein FdhE	fdhE: formate dehydrogenase accessory protein FdhE~[O] COG3058 Uncharacterized protein involved in formate dehydrogenase formation	gene	gene2445	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2456
CH54_2457	CH54_2457		CH54_2457	2668786	2669436	-	formate dehydrogenase%2C gamma subunit	formate-DH-gamm: formate dehydrogenase%2C gamma subunit~[C] COG2864 Cytochrome b subunit of formate dehydrogenase	gene	gene2446	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2457
CH54_2458	CH54_2458	fdxH	fdxH	2669433	2670404	-	formate dehydrogenase%2C beta subunit	FDH-beta: formate dehydrogenase%2C beta subunit~[C] COG0437 Fe-S-cluster-containing hydrogenase components 1	gene	gene2447	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2458
CH54_2459	CH54_2459	fdnG	fdnG	2670417	2672828	-	formate dehydrogenase-N alpha subunit	formate-DH-alph: formate dehydrogenase-N alpha subunit~[C] COG0243 Anaerobic dehydrogenases%2C typically selenocysteine-containing	gene	gene2448	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2459
CH54_246	CH54_246		CH54_246	253933	254175	+	hypothetical protein		gene	gene244	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_246
CH54_2460	CH54_2460		CH54_2460	2672877	2673464	-	molybdopterin oxidoreductase Fe4S4 domain protein	[C] COG0243 Anaerobic dehydrogenases%2C typically selenocysteine-containing	gene	gene2449	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2460
CH54_2461	CH54_2461		CH54_2461	2673648	2674502	+	formate dehydrogenase family accessory protein FdhD	fdhD_narQ: formate dehydrogenase family accessory protein FdhD~[C] COG1526 Uncharacterized protein required for formate dehydrogenase activity	gene	gene2450	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2461
CH54_2462	CH54_2462		CH54_2462	2674629	2675252	+	iron/manganese superoxide dismutase%2C alpha-hairpin domain protein	[P] COG0605 Superoxide dismutase	gene	gene2451	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2462
CH54_2463	CH54_2463		CH54_2463	2675702	2677651	+	methyl-accepting chemotaxis (MCP) signaling domain protein	[NT] COG0840 Methyl-accepting chemotaxis protein	gene	gene2452	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2463
CH54_2464	CH54_2464		CH54_2464	2678021	2678377	-	hypothetical protein	conserved hypothetical protein	gene	gene2453	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2464
CH54_2465	CH54_2465		CH54_2465	2678470	2679951	-	aminotransferase class I and II family protein	[KE] COG1167 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs	gene	gene2454	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2465
CH54_2466	CH54_2466		CH54_2466	2680828	2681304	-	mannitol repressor family protein	[K] COG3722 Transcriptional regulator	gene	gene2456	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2466
CH54_2467	CH54_2467		CH54_2467	2680220	2680831	+	lysE type translocator family protein	[E] COG1280 Putative threonine efflux protein	gene	gene2455	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2467
CH54_2468	CH54_2468		CH54_2468	2681472	2682635	-	mannitol dehydrogenase Rossmann domain protein	[G] COG0246 Mannitol-1-phosphate/altronate dehydrogenases	gene	gene2457	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2468
CH54_2469	CH54_2469	mtlA	mtlA	2682758	2684686	-	PTS system%2C mannitol-specific IIC component family protein	mtlA: PTS system%2C mannitol-specific IIC component family protein~[G] COG2213 Phosphotransferase system%2C mannitol-specific IIBC component	gene	gene2458	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2469
CH54_247	CH54_247		CH54_247	254231	254413	-	hypothetical protein	conserved hypothetical protein	gene	gene245	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_247
CH54_2470	CH54_2470		CH54_2470	2685784	2686503	-	hypothetical protein	conserved hypothetical protein	gene	gene2459	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2470
CH54_2471	CH54_2471	glyS	glyS	2686628	2688697	-	glycine--tRNA ligase%2C beta subunit	glyS: glycine--tRNA ligase%2C beta subunit~[J] COG0751 Glycyl-tRNA synthetase%2C beta subunit	gene	gene2460	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2471
CH54_2472	CH54_2472	glyQ	glyQ	2688707	2689621	-	glycine--tRNA ligase%2C alpha subunit	glyQ: glycine--tRNA ligase%2C alpha subunit~[J] COG0752 Glycyl-tRNA synthetase%2C alpha subunit	gene	gene2461	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2472
CH54_2473	CH54_2473		CH54_2473	2689930	2690223	-	hypothetical protein	conserved hypothetical protein	gene	gene2462	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2473
CH54_2474	CH54_2474		CH54_2474	2690488	2690763	-	hypothetical protein		gene	gene2463	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2474
CH54_2475	CH54_2475	tag	tag	2690959	2691531	+	DNA-3-methyladenine glycosylase I family protein	tag: DNA-3-methyladenine glycosylase I family protein~[L] COG2818 3-methyladenine DNA glycosylase	gene	gene2464	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2475
CH54_2476	CH54_2476		CH54_2476	2691528	2691992	+	acetyltransferase family protein	[KR] COG0454 Histone acetyltransferase HPA2 and related acetyltransferases	gene	gene2465	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2476
CH54_2477	CH54_2477		CH54_2477	2692224	2694254	+	hypothetical protein		gene	gene2466	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2477
CH54_2478	CH54_2478		CH54_2478	2694288	2696465	+	beta/Gamma crystallin family protein		gene	gene2467	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2478
CH54_2479	CH54_2479		CH54_2479	2696512	2697156	-	hypothetical protein	[K] COG2345 Predicted transcriptional regulator	gene	gene2468	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2479
CH54_248	CH54_248		CH54_248	254933	255646	+	hypothetical protein	conserved hypothetical protein~[R] COG1811 Uncharacterized membrane protein%2C possible Na+ channel or pump	gene	gene246	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_248
CH54_2480	CH54_2480		CH54_2480	2697362	2698801	+	major Facilitator Superfamily protein	[GEPR] COG0477 Permeases of the major facilitator superfamily	gene	gene2469	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2480
CH54_2481	CH54_2481		CH54_2481	2698959	2699939	+	D-isomer specific 2-hydroxyacid dehydrogenase%2C NAD binding domain protein	[CHR] COG1052 Lactate dehydrogenase and related dehydrogenases	gene	gene2470	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2481
CH54_2482	CH54_2482		CH54_2482	2700093	2702159	+	alpha amylase%2C catalytic domain protein	[G] COG0366 Glycosidases	gene	gene2471	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2482
CH54_2483	CH54_2483		CH54_2483	2702294	2703547	+	aminotransferase class I and II family protein	[E] COG3977 Alanine-alpha-ketoisovalerate (or valine-pyruvate) aminotransferase	gene	gene2472	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2483
CH54_2484	CH54_2484		CH54_2484	2703664	2705325	-	AspT/YidE/YbjL antiporter duplication domain protein	yidE_YbjL_dupl: AspT/YidE/YbjL antiporter duplication domain protein~[R] COG2985 Predicted permease	gene	gene2473	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2484
CH54_2485	CH54_2485		CH54_2485	2705674	2706147	-	hsp20/alpha crystallin family protein	[O] COG0071 Molecular chaperone (small heat shock protein)	gene	gene2474	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2485
CH54_2486	CH54_2486		CH54_2486	2706333	2706746	-	hsp20/alpha crystallin family protein	[O] COG0071 Molecular chaperone (small heat shock protein)	gene	gene2475	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2486
CH54_2487	CH54_2487		CH54_2487	2707129	2707467	+	hypothetical protein	conserved hypothetical protein~[R] COG5645 Predicted periplasmic lipoprotein	gene	gene2476	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2487
CH54_2488	CH54_2488		CH54_2488	2707469	2708782	-	hypothetical protein	dipeptidyl peptidase IV (DPP IV) N-terminal region family protein	gene	gene2477	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2488
CH54_2489	CH54_2489		CH54_2489	2708936	2709538	+	HTH domain protein	[S] COG2964 Uncharacterized protein conserved in bacteria	gene	gene2478	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2489
CH54_249	CH54_249		CH54_249	256245	256595	-	transposase%2C Mutator family protein	[L] COG3328 Transposase and inactivated derivatives	gene	gene247	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_249
CH54_2490	CH54_2490		CH54_2490	2709555	2710514	+	pyridoxal-phosphate dependent enzyme family protein	[E] COG1171 Threonine dehydratase	gene	gene2479	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2490
CH54_2491	CH54_2491		CH54_2491	2710511	2711449	+	ornithine cyclodeaminase/mu-crystallin family protein	[E] COG2423 Predicted ornithine cyclodeaminase%2C mu-crystallin homolog	gene	gene2480	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2491
CH54_2492	CH54_2492		CH54_2492	2711781	2712590	-	HAD hydrolase%2C IIB family protein	HAD-SF-IIB: HAD hydrolase%2C IIB family protein~[R] COG0561 Predicted hydrolases of the HAD superfamily	gene	gene2481	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2492
CH54_2493	CH54_2493	gyrB	gyrB	2712799	2715213	-	DNA gyrase%2C B subunit	gyrB: DNA gyrase%2C B subunit~[L] COG0187 Type IIA topoisomerase (DNA gyrase/topo II%2C topoisomerase IV)%2C B subunit	gene	gene2482	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2493
CH54_2494	CH54_2494	recF	recF	2715233	2716318	-	DNA replication and repair RecF family protein	recf: DNA replication and repair RecF family protein~[L] COG1195 Recombinational DNA repair ATPase (RecF pathway)	gene	gene2483	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2494
CH54_2495	CH54_2495	dnaN	dnaN	2716322	2717422	-	DNA polymerase III%2C beta subunit	dnan: DNA polymerase III%2C beta subunit~[L] COG0592 DNA polymerase sliding clamp subunit (PCNA homolog)	gene	gene2484	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2495
CH54_2496	CH54_2496	dnaA	dnaA	2717427	2718818	-	chromosomal replication initiator protein DnaA	dnaA: chromosomal replication initiator protein DnaA~[L] COG0593 ATPase involved in DNA replication initiation	gene	gene2485	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2496
CH54_2497	CH54_2497	rpmH	rpmH	2719521	2719661	+	ribosomal protein L34	rpmH_bact: ribosomal protein L34~[J] COG0230 Ribosomal protein L34	gene	gene2486	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2497
CH54_2498	CH54_2498	rnpA	rnpA	2719680	2720039	+	ribonuclease P protein component	rnpA: ribonuclease P protein component~[J] COG0594 RNase P protein component	gene	gene2487	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2498
CH54_2499	CH54_2499		CH54_2499	2720003	2720260	+	putative membrane protein insertion efficiency factor	[S] COG0759 Uncharacterized conserved protein	gene	gene2488	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2499
CH54_25	CH54_25		CH54_25	24687	24965	+	acylphosphatase family protein	[C] COG1254 Acylphosphatases	gene	gene24	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_25
CH54_250	CH54_250		CH54_250	256687	260106	-	outer membrane autotransporter barrel domain protein	autotrans_barl: outer membrane autotransporter barrel domain protein~[MU] COG3468 Type V secretory pathway%2C adhesin AidA	gene	gene248	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_250
CH54_2500	CH54_2500	yidC	yidC	2720263	2721903	+	Preprotein translocase subunit YidC	yidC_nterm: membrane protein insertase%2C YidC/Oxa1 family%2C N-terminal domain~[U] COG0706 Preprotein translocase subunit YidC	gene	gene2489	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2500
CH54_2501	CH54_2501	trmE	trmE	2722022	2723386	+	tRNA modification GTPase TrmE	mnmE_trmE_thdF: tRNA modification GTPase TrmE~[R] COG0486 Predicted GTPase	gene	gene2490	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2501
CH54_2502	CH54_2502		CH54_2502	2723516	2724715	+	NAD(P)H binding domain of trans-2-enoyl-CoA reductase family protein	[S] COG3007 Uncharacterized paraquat-inducible protein B	gene	gene2491	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2502
CH54_2503	CH54_2503		CH54_2503	2724934	2725746	+	NLPA lipofamily protein	[P] COG1464 ABC-type metal ion transport system%2C periplasmic component/surface antigen	gene	gene2492	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2503
CH54_2504	CH54_2504		CH54_2504	2725758	2726774	+	ABC transporter family protein	[P] COG1135 ABC-type metal ion transport system%2C ATPase component	gene	gene2493	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2504
CH54_2505	CH54_2505		CH54_2505	2726774	2727433	+	binding--dependent transport system inner membrane component family protein	[P] COG2011 ABC-type metal ion transport system%2C permease component	gene	gene2494	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2505
CH54_2506	CH54_2506		CH54_2506	2727562	2729466	-	methyl-accepting chemotaxis (MCP) signaling domain protein	[NT] COG0840 Methyl-accepting chemotaxis protein	gene	gene2495	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2506
CH54_2507	CH54_2507		CH54_2507	2729707	2730279	+	NADPH-dependent FMN reductase family protein	[R] COG0431 Predicted flavoprotein	gene	gene2496	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2507
CH54_2508	CH54_2508		CH54_2508	2730386	2731735	+	his Kinase A domain protein	[T] COG0642 Signal transduction histidine kinase	gene	gene2497	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2508
CH54_2509	CH54_2509		CH54_2509	2731710	2732327	+	bacterial regulatory s%2C luxR family protein	[T] COG4566 Response regulator	gene	gene2498	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2509
CH54_251	CH54_251		CH54_251	260291	260407	+	hypothetical protein		gene	gene249	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_251
CH54_2510	CH54_2510		CH54_2510	2732764	2733258	+	hypothetical protein	conserved hypothetical protein~[R] COG3193 Uncharacterized protein%2C possibly involved in utilization of glycolate and propanediol	gene	gene2499	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2510
CH54_2511	CH54_2511		CH54_2511	2733335	2734663	-	permease family protein	[R] COG2252 Permeases	gene	gene2500	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2511
CH54_2512	CH54_2512		CH54_2512	2735598	2736353	-	amino ABC transporter%2C permease%2C 3-TM region%2C His/Glu/Gln/Arg/opine family domain protein	HEQRo_perm_3TM: amino ABC transporter%2C permease%2C 3-TM region%2C His/Glu/Gln/Arg/opine family domain protein~[E] COG0765 ABC-type amino acid transport system%2C permease component	gene	gene2502	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2512
CH54_2513	CH54_2513		CH54_2513	2734933	2735601	+	HAD hydrolase%2C IA%2C variant 1 family protein	HAD-SF-IA-v1: HAD hydrolase%2C IA%2C variant 1 family protein~[R] COG0637 Predicted phosphatase/phosphohexomutase	gene	gene2501	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2513
CH54_2514	CH54_2514		CH54_2514	2736355	2737092	-	amino ABC transporter%2C permease%2C 3-TM region%2C His/Glu/Gln/Arg/opine family domain protein	HEQRo_perm_3TM: amino ABC transporter%2C permease%2C 3-TM region%2C His/Glu/Gln/Arg/opine family domain protein~[E] COG0765 ABC-type amino acid transport system%2C permease component	gene	gene2503	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2514
CH54_2515	CH54_2515		CH54_2515	2737180	2738034	-	bacterial extracellular solute-binding s%2C 3 family protein	[ET] COG0834 ABC-type amino acid transport/signal transduction systems%2C periplasmic component/domain	gene	gene2504	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2515
CH54_2516	CH54_2516		CH54_2516	2738289	2738747	-	polymer-forming cytoskeletal family protein	[M] COG1664 Integral membrane protein CcmA involved in cell shape determination	gene	gene2505	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2516
CH54_2517	CH54_2517	phoU	phoU	2739276	2739998	-	phosphate transport system regulatory protein PhoU	phoU_full: phosphate transport system regulatory protein PhoU~[P] COG0704 Phosphate uptake regulator	gene	gene2506	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2517
CH54_2518	CH54_2518	pstB	pstB	2740053	2740829	-	phosphate ABC transporter%2C ATP-binding protein	3a0107s01c2: phosphate ABC transporter%2C ATP-binding protein~[P] COG1117 ABC-type phosphate transport system%2C ATPase component	gene	gene2507	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2518
CH54_2519	CH54_2519	pstA	pstA	2740929	2741816	-	phosphate ABC transporter%2C permease protein PstA	3a0107s02c: phosphate ABC transporter%2C permease protein PstA~[P] COG0581 ABC-type phosphate transport system%2C permease component	gene	gene2508	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2519
CH54_252	CH54_252	thrS	thrS	261465	263393	+	threonine--tRNA ligase	thrS: threonine--tRNA ligase~[J] COG0441 Threonyl-tRNA synthetase	gene	gene250	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_252
CH54_2520	CH54_2520	pstC	pstC	2741818	2742771	-	phosphate ABC transporter%2C permease protein PstC	phosphate_pstC: phosphate ABC transporter%2C permease protein PstC~[P] COG0573 ABC-type phosphate transport system%2C permease component	gene	gene2509	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2520
CH54_2521	CH54_2521	pstS	pstS	2742983	2744023	-	phosphate ABC transporter%2C phosphate-binding protein PstS	3a0107s03: phosphate ABC transporter%2C phosphate-binding protein PstS~[P] COG0226 ABC-type phosphate transport system%2C periplasmic component	gene	gene2510	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2521
CH54_2522	CH54_2522		CH54_2522	2744698	2746203	+	sulfate transporter family protein	[P] COG0659 Sulfate permease and related transporters (MFS superfamily)	gene	gene2511	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2522
CH54_2523	CH54_2523	glmS	glmS	2746283	2748112	-	glutamine-fructose-6-phosphate transaminase	glmS: glutamine-fructose-6-phosphate transaminase~[M] COG0449 Glucosamine 6-phosphate synthetase%2C contains amidotransferase and phosphosugar isomerase domains	gene	gene2512	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2523
CH54_2524	CH54_2524	glmU	glmU	2748321	2749691	-	UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase	glmU: UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase~[M] COG1207 N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains)	gene	gene2513	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2524
CH54_2525	CH54_2525	atpC	atpC	2750226	2750648	-	ATP synthase F1%2C epsilon subunit	ATP_synt_epsi: ATP synthase F1%2C epsilon subunit~[C] COG0355 F0F1-type ATP synthase%2C epsilon subunit (mitochondrial delta subunit)	gene	gene2514	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2525
CH54_2526	CH54_2526	atpD	atpD	2750670	2752052	-	ATP synthase F1%2C beta subunit	atpD: ATP synthase F1%2C beta subunit~[C] COG0055 F0F1-type ATP synthase%2C beta subunit	gene	gene2515	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2526
CH54_2527	CH54_2527	atpG	atpG	2752209	2753072	-	ATP synthase F1%2C gamma subunit	ATPsyn_F1gamma: ATP synthase F1%2C gamma subunit~[C] COG0224 F0F1-type ATP synthase%2C gamma subunit	gene	gene2516	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2527
CH54_2528	CH54_2528	atpA	atpA	2753134	2754675	-	ATP synthase F1%2C alpha subunit	atpA: ATP synthase F1%2C alpha subunit~[C] COG0056 F0F1-type ATP synthase%2C alpha subunit	gene	gene2517	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2528
CH54_2529	CH54_2529	atpH	atpH	2754690	2755223	-	ATP synthase F1%2C delta subunit	ATP_synt_delta: ATP synthase F1%2C delta subunit~[C] COG0712 F0F1-type ATP synthase%2C delta subunit (mitochondrial oligomycin sensitivity protein)	gene	gene2518	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2529
CH54_253	CH54_253	infC	infC	263598	263948	+	translation initiation factor IF-3	infC: translation initiation factor IF-3~[J] COG0290 Translation initiation factor 3 (IF-3)	gene	gene251	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_253
CH54_2530	CH54_2530	atpF	atpF	2755238	2755708	-	ATP synthase F0%2C B subunit	ATP_synt_b: ATP synthase F0%2C B subunit~[C] COG0711 F0F1-type ATP synthase%2C subunit b	gene	gene2519	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2530
CH54_2531	CH54_2531	atpE	atpE	2755769	2756008	-	ATP synthase F0%2C C subunit	ATP_synt_c: ATP synthase F0%2C C subunit~[C] COG0636 F0F1-type ATP synthase%2C subunit c/Archaeal/vacuolar-type H+-ATPase%2C subunit K	gene	gene2520	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2531
CH54_2532	CH54_2532	atpB	atpB	2756058	2756882	-	ATP synthase F0%2C A subunit	ATP_synt_6_or_A: ATP synthase F0%2C A subunit~[C] COG0356 F0F1-type ATP synthase%2C subunit a	gene	gene2521	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2532
CH54_2533	CH54_2533		CH54_2533	2756938	2757321	-	ATP synthase I chain family protein	[C] COG3312 F0F1-type ATP synthase%2C subunit I	gene	gene2522	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2533
CH54_2534	CH54_2534	rsmG	rsmG	2757987	2758607	-	16S rRNA (guanine(527)-N(7))-methyltransferase RsmG	rsmG_gidB: 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG~[M] COG0357 Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division	gene	gene2523	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2534
CH54_2535	CH54_2535	gidA	gidA	2758771	2760660	-	tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA	gidA: tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA~[D] COG0445 NAD/FAD-utilizing enzyme apparently involved in cell division	gene	gene2524	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2535
CH54_2536	CH54_2536		CH54_2536	2761041	2761481	-	flavodoxin family protein	[C] COG0716 Flavodoxins	gene	gene2525	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2536
CH54_2537	CH54_2537		CH54_2537	2761573	2762034	-	asnC-type helix-turn-helix domain protein	[K] COG1522 Transcriptional regulators	gene	gene2526	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2537
CH54_2538	CH54_2538	asnA	asnA	2762221	2763213	+	aspartate--ammonia ligase	asnA: aspartate--ammonia ligase~[E] COG2502 Asparagine synthetase A	gene	gene2527	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2538
CH54_2539	CH54_2539		CH54_2539	2763337	2764008	+	hypothetical protein	conserved hypothetical protein~[S] COG4291 Predicted membrane protein	gene	gene2528	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2539
CH54_254	CH54_254	rpmI	rpmI	264045	264242	+	ribosomal protein L35	rpmI_bact: ribosomal protein L35~[J] COG0291 Ribosomal protein L35	gene	gene252	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_254
CH54_2540	CH54_2540		CH54_2540	2764018	2765484	-	VWA domain containing CoxE-like family protein	[R] COG2425 Uncharacterized protein containing a von Willebrand factor type A (vWA) domain	gene	gene2529	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2540
CH54_2541	CH54_2541		CH54_2541	2765488	2766996	-	AAA domain family protein	[R] COG0714 MoxR-like ATPases	gene	gene2530	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2541
CH54_2542	CH54_2542	kup	kup	2767173	2769152	+	potassium uptake protein	kup: potassium uptake protein~[P] COG3158 K+ transporter	gene	gene2531	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2542
CH54_2543	CH54_2543		CH54_2543	2769474	2769893	+	rbsD / FucU transport family protein	[G] COG1869 ABC-type ribose transport system%2C auxiliary component	gene	gene2532	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2543
CH54_2544	CH54_2544	ccmA	ccmA	2769901	2771403	+	heme ABC exporter%2C ATP-binding protein CcmA	ccmA: heme ABC exporter%2C ATP-binding protein CcmA~[G] COG1129 ABC-type sugar transport system%2C ATPase component	gene	gene2533	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2544
CH54_2545	CH54_2545		CH54_2545	2771491	2772459	+	branched-chain amino acid transport system / permease component family protein	[G] COG1172 Ribose/xylose/arabinose/galactoside ABC-type transport systems%2C permease components	gene	gene2534	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2545
CH54_2546	CH54_2546		CH54_2546	2772486	2773376	+	periplasmic binding domain protein	[G] COG1879 ABC-type sugar transport system%2C periplasmic component	gene	gene2535	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2546
CH54_2547	CH54_2547	rbsK	rbsK	2773451	2774377	+	ribokinase	D_ribokin_bact: ribokinase~[G] COG0524 Sugar kinases%2C ribokinase family	gene	gene2536	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2547
CH54_2548	CH54_2548		CH54_2548	2775378	2776802	-	drug resistance MFS transporter%2C drug:H+ antiporter-2 family protein	efflux_EmrB: drug resistance MFS transporter%2C drug:H+ antiporter-2 family protein~[GEPR] COG0477 Permeases of the major facilitator superfamily	gene	gene2538	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2548
CH54_2549	CH54_2549		CH54_2549	2774389	2775381	+	bacterial regulatory s%2C lacI family protein	[K] COG1609 Transcriptional regulators	gene	gene2537	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2549
CH54_255	CH54_255	rplT	rplT	264280	264636	+	ribosomal protein L20	rplT_bact: ribosomal protein L20~[J] COG0292 Ribosomal protein L20	gene	gene253	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_255
CH54_2550	CH54_2550		CH54_2550	2776873	2777562	-	bacterial regulatory s%2C gntR family protein	[K] COG2186 Transcriptional regulators	gene	gene2539	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2550
CH54_2551	CH54_2551		CH54_2551	2778122	2779652	+	16S ribosomal RNA		rRNA	gene2540	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2551
CH54_2552	CH54_2552		CH54_2552	2779793	2779868	+	tRNA-Glu		tRNA	gene2541	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2552
CH54_2553	CH54_2553		CH54_2553	2780096	2783087	+	23S ribosomal RNA		rRNA	gene2542	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2553
CH54_2554	CH54_2554		CH54_2554	2783205	2783319	+	5S ribosomal RNA		rRNA	gene2543	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2554
CH54_2555	CH54_2555	mobB	mobB	2783524	2784060	-	molybdopterin-guanine dinucleotide biosynthesis protein B	mobB: molybdopterin-guanine dinucleotide biosynthesis protein B~[H] COG1763 Molybdopterin-guanine dinucleotide biosynthesis protein	gene	gene2544	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2555
CH54_2556	CH54_2556	mobA	mobA	2784057	2784647	-	molybdenum cofactor guanylyltransferase	molyb_mobA: molybdenum cofactor guanylyltransferase~[H] COG0746 Molybdopterin-guanine dinucleotide biosynthesis protein A	gene	gene2545	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2556
CH54_2557	CH54_2557		CH54_2557	2784801	2785070	+	hypothetical protein	conserved hypothetical protein~[S] COG3084 Uncharacterized protein conserved in bacteria	gene	gene2546	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2557
CH54_2558	CH54_2558		CH54_2558	2785162	2786148	+	phosphotransferase enzyme family protein	[R] COG2334 Putative homoserine kinase type II (protein kinase fold)	gene	gene2547	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2558
CH54_2559	CH54_2559		CH54_2559	2786176	2786799	+	DSBA-like thioredoxin domain protein	[OC] COG0526 Thiol-disulfide isomerase and thioredoxins	gene	gene2548	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2559
CH54_256	CH54_256	pheS	pheS	265100	266083	+	phenylalanine--tRNA ligase%2C alpha subunit	pheS: phenylalanine--tRNA ligase%2C alpha subunit~[J] COG0016 Phenylalanyl-tRNA synthetase alpha subunit	gene	gene254	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_256
CH54_2560	CH54_2560	polA	polA	2787390	2790188	+	DNA polymerase I	pola: DNA polymerase I~[L] COG0749 DNA polymerase I - 3'-5' exonuclease and polymerase domains	gene	gene2549	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2560
CH54_2561	CH54_2561	ysxC	ysxC	2790627	2791277	-	ribosome biogenesis GTP-binding protein YsxC	GTPase_YsxC: ribosome biogenesis GTP-binding protein YsxC~[R] COG0218 Predicted GTPase	gene	gene2550	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2561
CH54_2562	CH54_2562		CH54_2562	2792059	2792622	+	der GTPase activator family protein	[S] COG3078 Uncharacterized protein conserved in bacteria	gene	gene2551	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2562
CH54_2563	CH54_2563	hemN	hemN	2792805	2794178	+	oxygen-independent coproporphyrinogen III oxidase	hemN: oxygen-independent coproporphyrinogen III oxidase~[H] COG0635 Coproporphyrinogen III oxidase and related Fe-S oxidoreductases	gene	gene2552	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2563
CH54_2564	CH54_2564	ntrC	ntrC	2794220	2795632	-	nitrogen regulation protein NR	ntrC: nitrogen regulation protein NR~[T] COG2204 Response regulator containing CheY-like receiver%2C AAA-type ATPase%2C and DNA-binding domains	gene	gene2553	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2564
CH54_2565	CH54_2565		CH54_2565	2795640	2796689	-	PAS fold family protein	[T] COG3852 Signal transduction histidine kinase%2C nitrogen specific	gene	gene2554	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2565
CH54_2566	CH54_2566	glnA	glnA	2797017	2798426	-	glutamine synthetase%2C type I	glnA: glutamine synthetase%2C type I~[E] COG0174 Glutamine synthetase	gene	gene2555	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2566
CH54_2567	CH54_2567	typA	typA	2798847	2800670	+	GTP-binding protein TypA/BipA	typA_BipA: GTP-binding protein TypA/BipA~[T] COG1217 Predicted membrane GTPase involved in stress response	gene	gene2556	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2567
CH54_2568	CH54_2568		CH54_2568	2800907	2801494	+	HAD hydrolase%2C IA%2C variant 3 family protein	HAD-SF-IA-v3: HAD hydrolase%2C IA%2C variant 3 family protein~[R] COG1011 Predicted hydrolase (HAD superfamily)	gene	gene2557	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2568
CH54_2569	CH54_2569	yihY	yihY	2801576	2802460	+	YihY family inner membrane domain protein	yihY_not_rbn: YihY family inner membrane domain protein~[S] COG1295 Predicted membrane protein	gene	gene2558	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2569
CH54_257	CH54_257	pheT	pheT	266098	268485	+	phenylalanine--tRNA ligase%2C beta subunit	pheT_bact: phenylalanine--tRNA ligase%2C beta subunit~[J] COG0072 Phenylalanyl-tRNA synthetase beta subunit	gene	gene255	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_257
CH54_2570	CH54_2570	dtd	dtd	2802467	2802904	+	D-tyrosyl-tRNA(Tyr) deacylase	[J] COG1490 D-Tyr-tRNAtyr deacylase	gene	gene2559	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2570
CH54_2571	CH54_2571		CH54_2571	2802977	2803900	+	putative thioesterase domain protein	yiiD_Cterm: putative thioesterase domain protein~[KR] COG0454 Histone acetyltransferase HPA2 and related acetyltransferases	gene	gene2560	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2571
CH54_2572	CH54_2572		CH54_2572	2804306	2804551	+	winged helix-turn-helix DNA-binding family protein	[K] COG3423 Predicted transcriptional regulator	gene	gene2561	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2572
CH54_2573	CH54_2573		CH54_2573	2804564	2805250	+	bacterial regulatory s%2C luxR family protein	[TK] COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain	gene	gene2562	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2573
CH54_2574	CH54_2574		CH54_2574	2805280	2805969	+	bacterial regulatory s%2C luxR family protein	[TK] COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain	gene	gene2563	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2574
CH54_2575	CH54_2575		CH54_2575	2806075	2807784	-	asmA family protein		gene	gene2564	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2575
CH54_2576	CH54_2576	pbuX	pbuX	2807931	2809349	-	xanthine permease family protein	pbuX: xanthine permease family protein~[F] COG2233 Xanthine/uracil permeases	gene	gene2565	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2576
CH54_2577	CH54_2577	gltS	gltS	2809555	2810769	+	sodium/glutamate symporter	gltS: sodium/glutamate symporter~[E] COG0786 Na+/glutamate symporter	gene	gene2566	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2577
CH54_2578	CH54_2578	recG	recG	2810820	2812901	-	ATP-dependent DNA helicase RecG	recG: ATP-dependent DNA helicase RecG~[LK] COG1200 RecG-like helicase	gene	gene2567	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2578
CH54_2579	CH54_2579		CH54_2579	2812902	2813561	-	spoU rRNA Methylase family protein	[J] COG0566 rRNA methylases	gene	gene2568	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2579
CH54_258	CH54_258	ihfA	ihfA	268490	268786	+	integration host factor%2C alpha subunit	himA: integration host factor%2C alpha subunit~[L] COG0776 Bacterial nucleoid DNA-binding protein	gene	gene256	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_258
CH54_2580	CH54_2580		CH54_2580	2813600	2815702	-	RelA/SpoT family protein	spoT_relA: RelA/SpoT family protein~[TK] COG0317 Guanosine polyphosphate pyrophosphohydrolases/synthetases	gene	gene2569	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2580
CH54_2581	CH54_2581	rpoZ	rpoZ	2815721	2815996	-	DNA-directed RNA polymerase%2C omega subunit	rpoZ: DNA-directed RNA polymerase%2C omega subunit~[K] COG1758 DNA-directed RNA polymerase%2C subunit K/omega	gene	gene2570	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2581
CH54_2582	CH54_2582	gmk	gmk	2816051	2816674	-	guanylate kinase	guanyl_kin: guanylate kinase~[F] COG0194 Guanylate kinase	gene	gene2571	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2582
CH54_2583	CH54_2583		CH54_2583	2816961	2818655	+	NAD-dependent DNA ligase adenylation domain protein	[L] COG0272 NAD-dependent DNA ligase (contains BRCT domain type II)	gene	gene2572	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2583
CH54_2584	CH54_2584		CH54_2584	2818671	2819291	-	hypothetical protein	conserved hypothetical protein~[S] COG2860 Predicted membrane protein	gene	gene2573	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2584
CH54_2585	CH54_2585		CH54_2585	2820171	2820857	-		na+ dependent nucleoside transporter family protein	pseudogene	gene2574	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2585
CH54_2587	CH54_2587		CH54_2587	2821022	2821888	+	enoyl-CoA hydratase/isomerase family protein	[I] COG1024 Enoyl-CoA hydratase/carnithine racemase	gene	gene2575	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2587
CH54_2588	CH54_2588		CH54_2588	2821898	2823892	-	diguanylate cyclase domain protein	GGDEF: diguanylate cyclase domain protein~[T] COG2200 FOG: EAL domain	gene	gene2576	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2588
CH54_2589	CH54_2589		CH54_2589	2824334	2824570	-	hypothetical protein	conserved hypothetical protein	gene	gene2577	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2589
CH54_259	CH54_259		CH54_259	269126	269665	+	hypothetical protein	conserved hypothetical protein~[S] COG3122 Uncharacterized protein conserved in bacteria	gene	gene257	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_259
CH54_2590	CH54_2590		CH54_2590	2824690	2825523	-	metallo-beta-lactamase superfamily protein	[R] COG1237 Metal-dependent hydrolases of the beta-lactamase superfamily II	gene	gene2578	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2590
CH54_2591	CH54_2591		CH54_2591	2825564	2826111	-		putative membrane protein%3BlysE type translocator family protein	pseudogene	gene2579	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2591
CH54_2593	CH54_2593		CH54_2593	2826290	2826439	+	acetyltransferase%2C GNAT family		gene	gene2580	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2593
CH54_2594	CH54_2594		CH54_2594	2826743	2827606	-	hypothetical protein	conserved hypothetical protein~[S] COG1561 Uncharacterized stress-induced protein	gene	gene2581	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2594
CH54_2595	CH54_2595	rph	rph	2827734	2828450	+	ribonuclease PH	RNasePH: ribonuclease PH~[J] COG0689 RNase PH	gene	gene2582	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2595
CH54_2596	CH54_2596		CH54_2596	2828600	2828926	-	hypothetical protein		gene	gene2583	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2596
CH54_2597	CH54_2597		CH54_2597	2829062	2829277	-	ogr/Delta-like zinc finger family protein		gene	gene2584	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2597
CH54_2598	CH54_2598		CH54_2598	2829352	2830458	-	phage late control protein	[R] COG3500 Phage protein D	gene	gene2585	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2598
CH54_2599	CH54_2599		CH54_2599	2830455	2830916	-	phage P2 GpU family protein	[R] COG3499 Phage protein U	gene	gene2586	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2599
CH54_26	CH54_26	tusE	tusE	24993	25322	-	sulfur relay%2C TusE/DsrC/DsvC family protein	dsrC_tusE_dsvC: sulfur relay%2C TusE/DsrC/DsvC family protein~[P] COG2920 Dissimilatory sulfite reductase (desulfoviridin)%2C gamma subunit	gene	gene25	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_26
CH54_260	CH54_260		CH54_260	270087	270611	+	hypothetical protein	conserved hypothetical protein	gene	gene258	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_260
CH54_2600	CH54_2600		CH54_2600	2830931	2833858	-	phage tail tape measure protein%2C TP901 family%2C core region	tape_meas_TP901: phage tail tape measure protein%2C TP901 family%2C core region~[S] COG5283 Phage-related tail protein	gene	gene2587	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2600
CH54_2601	CH54_2601		CH54_2601	2833985	2834338	-	mu-like prophage FluMu gp41 family protein		gene	gene2588	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2601
CH54_2602	CH54_2602		CH54_2602	2834415	2834930	-	phage major tail tube protein	tail_tube: phage major tail tube protein~[R] COG3498 Phage tail tube protein FII	gene	gene2589	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2602
CH54_2603	CH54_2603		CH54_2603	2834944	2836119	-	phage tail sheath family protein	[R] COG3497 Phage tail sheath protein FI	gene	gene2590	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2603
CH54_2604	CH54_2604		CH54_2604	2836245	2836724	-	hypothetical protein		gene	gene2591	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2604
CH54_2605	CH54_2605		CH54_2605	2836724	2837734	-	phage tail-collar fiber family protein	[R] COG5301 Phage-related tail fibre protein	gene	gene2592	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2605
CH54_2606	CH54_2606		CH54_2606	2837731	2838339	-	phage tail protein I	tail_P2_I: phage tail protein I~[R] COG4385 Bacteriophage P2-related tail formation protein	gene	gene2593	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2606
CH54_2607	CH54_2607		CH54_2607	2838332	2839240	-	baseplate J-like family protein	[R] COG3948 Phage-related baseplate assembly protein	gene	gene2594	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2607
CH54_2608	CH54_2608		CH54_2608	2839240	2839596	-	lysozyme family protein	[R] COG3628 Phage baseplate assembly protein W	gene	gene2595	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2608
CH54_2609	CH54_2609		CH54_2609	2839593	2840228	-	phage baseplate assembly V family protein	phage_P2_V: phage baseplate assembly V family protein~[R] COG4540 Phage P2 baseplate assembly protein gpV	gene	gene2596	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2609
CH54_261	CH54_261		CH54_261	270804	271811	+	fecCD transport family protein	[H] COG4139 ABC-type cobalamin transport system%2C permease component	gene	gene259	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_261
CH54_2610	CH54_2610		CH54_2610	2840415	2840861	-	phage virion morphogenesis protein	tail_comp_S: phage virion morphogenesis protein	gene	gene2597	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2610
CH54_2611	CH54_2611		CH54_2611	2840858	2841325	-	P2 phage tail completion R family protein		gene	gene2598	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2611
CH54_2612	CH54_2612		CH54_2612	2841424	2841897	-	phage lysis regulatory%2C LysB family protein	phage_LysB: phage lysis regulatory%2C LysB family protein	gene	gene2599	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2612
CH54_2613	CH54_2613		CH54_2613	2841854	2842249	-	D-alanyl-D-alanine carboxypeptidase family protein		gene	gene2600	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2613
CH54_2614	CH54_2614		CH54_2614	2842236	2842622	-	phage holin family protein		gene	gene2601	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2614
CH54_2615	CH54_2615		CH54_2615	2842653	2842856	-	phage Tail Protein X family protein	[R] COG5004 P2-like prophage tail protein X	gene	gene2602	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2615
CH54_2616	CH54_2616		CH54_2616	2842856	2843347	-	phage head completion family protein		gene	gene2603	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2616
CH54_2617	CH54_2617		CH54_2617	2843446	2844102	-	phage small terminase subunit		gene	gene2604	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2617
CH54_2618	CH54_2618		CH54_2618	2844108	2845163	-	phage major capsid protein%2C P2 family	major_capsid_P2: phage major capsid protein%2C P2 family	gene	gene2605	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2618
CH54_2619	CH54_2619		CH54_2619	2845200	2846012	-	phage capsid scaffolding (GPO) serine peptidase family protein		gene	gene2606	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2619
CH54_262	CH54_262		CH54_262	271873	272427	+	glutathione peroxidase family protein	[O] COG0386 Glutathione peroxidase	gene	gene260	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_262
CH54_2620	CH54_2620		CH54_2620	2846181	2847944	+	ATPase subunit of terminase family protein	[S] COG5484 Uncharacterized conserved protein	gene	gene2607	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2620
CH54_2621	CH54_2621		CH54_2621	2847944	2848669	+	terminase-like family protein	[S] COG5484 Uncharacterized conserved protein	gene	gene2608	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2621
CH54_2622	CH54_2622		CH54_2622	2848666	2849697	+	phage portal protein%2C PBSX family	portal_PBSX: phage portal protein%2C PBSX family~[R] COG5518 Bacteriophage capsid portal protein	gene	gene2609	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2622
CH54_2623	CH54_2623		CH54_2623	2850379	2850723	-	hypothetical protein		gene	gene2610	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2623
CH54_2624	CH54_2624		CH54_2624	2850737	2851057	-	hypothetical protein		gene	gene2611	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2624
CH54_2625	CH54_2625		CH54_2625	2851081	2851311	-	hypothetical protein		gene	gene2612	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2625
CH54_2626	CH54_2626		CH54_2626	2851292	2853916	-	bacteriophage replication protein		gene	gene2613	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2626
CH54_2627	CH54_2627		CH54_2627	2853913	2854194	-	hypothetical protein		gene	gene2614	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2627
CH54_2628	CH54_2628		CH54_2628	2854191	2854553	-	hypothetical protein		gene	gene2615	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2628
CH54_2629	CH54_2629	dam	dam	2854550	2855371	-	DNA adenine methylase family protein	dam: DNA adenine methylase family protein~[L] COG0338 Site-specific DNA methylase	gene	gene2616	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2629
CH54_263	CH54_263		CH54_263	272452	273216	+	ABC transporter family protein	[H] COG4138 ABC-type cobalamin transport system%2C ATPase component	gene	gene261	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_263
CH54_2630	CH54_2630		CH54_2630	2855368	2856012	-	exonuclease family protein	[L] COG0847 DNA polymerase III%2C epsilon subunit and related 3'-5' exonucleases	gene	gene2617	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2630
CH54_2631	CH54_2631		CH54_2631	2856009	2856446	-	hypothetical protein	conserved hypothetical protein	gene	gene2618	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2631
CH54_2632	CH54_2632		CH54_2632	2856529	2856834	-	hypothetical protein	conserved hypothetical protein	gene	gene2619	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2632
CH54_2633	CH54_2633		CH54_2633	2856838	2857005	-	hypothetical protein		gene	gene2620	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2633
CH54_2634	CH54_2634		CH54_2634	2857041	2857322	-	hypothetical protein		gene	gene2621	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2634
CH54_2635	CH54_2635		CH54_2635	2857357	2857515	-	hypothetical protein	conserved hypothetical protein	gene	gene2622	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2635
CH54_2636	CH54_2636		CH54_2636	2857500	2857814	-	hypothetical protein	conserved hypothetical protein	gene	gene2623	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2636
CH54_2637	CH54_2637		CH54_2637	2857811	2858020	-	hypothetical protein		gene	gene2624	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2637
CH54_2638	CH54_2638		CH54_2638	2858017	2858391	-	regulatory phage cox family protein		gene	gene2625	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2638
CH54_2639	CH54_2639		CH54_2639	2858501	2858800	+	hypothetical protein		gene	gene2626	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2639
CH54_264	CH54_264		CH54_264	273557	274705	+	beta-eliminating lyase family protein	[M] COG0399 Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis	gene	gene262	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_264
CH54_2640	CH54_2640		CH54_2640	2858867	2859862	+	phage integrase family protein	[L] COG0582 Integrase	gene	gene2627	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2640
CH54_2641	CH54_2641	pyrE	pyrE	2860063	2860704	+	orotate phosphoribosyltransferase	pyrE: orotate phosphoribosyltransferase~[F] COG0461 Orotate phosphoribosyltransferase	gene	gene2628	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2641
CH54_2642	CH54_2642		CH54_2642	2860779	2861375	-	bacterial regulatory s%2C tetR family protein	[K] COG1309 Transcriptional regulator	gene	gene2629	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2642
CH54_2643	CH54_2643	dut	dut	2861497	2861955	-	dUTP diphosphatase family protein	dut: dUTP diphosphatase family protein~[F] COG0756 dUTPase	gene	gene2630	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2643
CH54_2644	CH54_2644	coaBC	coaBC	2861933	2863165	-	phosphopantothenoylcysteine decarboxylase / phosphopantothenate--cysteine ligase	coaBC_dfp: phosphopantothenoylcysteine decarboxylase / phosphopantothenate--cysteine ligase~[H] COG0452 Phosphopantothenoylcysteine synthetase/decarboxylase	gene	gene2631	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2644
CH54_2645	CH54_2645		CH54_2645	2863360	2864028	+	DNA repair RadC family protein	radc: DNA repair RadC family protein~[L] COG2003 DNA repair proteins	gene	gene2632	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2645
CH54_2646	CH54_2646	rpmB	rpmB	2864292	2864528	+	ribosomal protein L28	L28: ribosomal protein L28~[J] COG0227 Ribosomal protein L28	gene	gene2633	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2646
CH54_2647	CH54_2647	rpmG	rpmG	2864540	2864707	+	ribosomal protein L33	rpmG_bact: ribosomal protein L33~[J] COG0267 Ribosomal protein L33	gene	gene2634	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2647
CH54_2648	CH54_2648	mutM	mutM	2864793	2865602	+	DNA-formamidopyrimidine glycosylase	fpg: DNA-formamidopyrimidine glycosylase~[L] COG0266 Formamidopyrimidine-DNA glycosylase	gene	gene2635	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2648
CH54_2649	CH54_2649	coaD	coaD	2865686	2866165	-	pantetheine-phosphate adenylyltransferase	coaD_prev_kdtB: pantetheine-phosphate adenylyltransferase~[H] COG0669 Phosphopantetheine adenylyltransferase	gene	gene2636	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2649
CH54_265	CH54_265		CH54_265	274698	275681	+	glycosyltransferase like 2 family protein	[M] COG0463 Glycosyltransferases involved in cell wall biogenesis	gene	gene263	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_265
CH54_2650	CH54_2650		CH54_2650	2866162	2866944	-	glycosyltransferase like 2 family protein	[M] COG0463 Glycosyltransferases involved in cell wall biogenesis	gene	gene2637	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2650
CH54_2651	CH54_2651		CH54_2651	2866945	2868222	-	glycosyl transferases group 1 family protein	[M] COG1519 3-deoxy-D-manno-octulosonic-acid transferase	gene	gene2638	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2651
CH54_2652	CH54_2652	waaC	waaC	2868780	2869745	-	lipopolysaccharide heptosyltransferase I	heptsyl_trn_I: lipopolysaccharide heptosyltransferase I~[M] COG0859 ADP-heptose:LPS heptosyltransferase	gene	gene2639	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2652
CH54_2653	CH54_2653	waaF	waaF	2869745	2870809	-	lipopolysaccharide heptosyltransferase II	heptsyl_trn_II: lipopolysaccharide heptosyltransferase II~[M] COG0859 ADP-heptose:LPS heptosyltransferase	gene	gene2640	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2653
CH54_2654	CH54_2654	rfaD	rfaD	2870840	2871772	-	ADP-glyceromanno-heptose 6-epimerase	heptose_epim: ADP-glyceromanno-heptose 6-epimerase~[MG] COG0451 Nucleoside-diphosphate-sugar epimerases	gene	gene2641	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2654
CH54_2655	CH54_2655	kbl	kbl	2872016	2873227	+	glycine C-acetyltransferase	2am3keto_CoA: glycine C-acetyltransferase~[H] COG0156 7-keto-8-aminopelargonate synthetase and related enzymes	gene	gene2642	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2655
CH54_2656	CH54_2656	tdh	tdh	2873237	2874292	+	L-threonine 3-dehydrogenase	tdh: L-threonine 3-dehydrogenase~[ER] COG1063 Threonine dehydrogenase and related Zn-dependent dehydrogenases	gene	gene2643	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2656
CH54_2657	CH54_2657		CH54_2657	2874498	2875523	-	divergent polysaccharide deacetylase family protein	[S] COG2861 Uncharacterized protein conserved in bacteria	gene	gene2644	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2657
CH54_2658	CH54_2658		CH54_2658	2875547	2876917	-	peptidase M23 family protein	[D] COG4942 Membrane-bound metallopeptidase	gene	gene2645	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2658
CH54_2659	CH54_2659	gpmI	gpmI	2876927	2878474	-	phosphoglycerate mutase	pgm_bpd_ind: phosphoglycerate mutase~[G] COG0696 Phosphoglyceromutase	gene	gene2646	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2659
CH54_266	CH54_266		CH54_266	275678	277711	+	3-beta hydroxysteroid dehydrogenase/isomerase family protein	[MG] COG0451 Nucleoside-diphosphate-sugar epimerases	gene	gene264	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_266
CH54_2660	CH54_2660		CH54_2660	2878716	2879150	+	rhodanese-like domain protein	[P] COG0607 Rhodanese-related sulfurtransferase	gene	gene2647	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2660
CH54_2661	CH54_2661	grxC	grxC	2879200	2879448	+	glutaredoxin 3	GRX_bact: glutaredoxin 3~[O] COG0695 Glutaredoxin and related proteins	gene	gene2648	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2661
CH54_2662	CH54_2662	secB	secB	2879539	2880015	+	protein-export chaperone SecB	secB: protein-export chaperone SecB~[U] COG1952 Preprotein translocase subunit SecB	gene	gene2649	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2662
CH54_2663	CH54_2663		CH54_2663	2880015	2881034	+	ketopantoate reductase PanE/ApbA family protein	[C] COG0240 Glycerol-3-phosphate dehydrogenase	gene	gene2650	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2663
CH54_2664	CH54_2664	cysE	cysE	2881167	2881988	+	serine O-acetyltransferase	cysE: serine O-acetyltransferase~[E] COG1045 Serine acetyltransferase	gene	gene2651	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2664
CH54_2665	CH54_2665	trmL	trmL	2882156	2882674	-	tRNA (cytidine(34)-2'-O)-methyltransferase	tRNA_yibK_trmL: tRNA (cytidine(34)-2'-O)-methyltransferase~[J] COG0219 Predicted rRNA methylase (SpoU class)	gene	gene2652	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2665
CH54_2666	CH54_2666		CH54_2666	2882893	2883960	+	methylated-DNA--[]-cysteine S-methyltransferase family protein	ogt: methylated-DNA--[]-cysteine S-methyltransferase family protein~[F] COG2169 Adenosine deaminase	gene	gene2653	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2666
CH54_2667	CH54_2667		CH54_2667	2884005	2885381	-	HAMP domain protein	[T] COG0642 Signal transduction histidine kinase	gene	gene2654	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2667
CH54_2668	CH54_2668		CH54_2668	2885378	2886076	-	hypothetical protein	transcriptional regulatory%2C C terminal family protein~[TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain	gene	gene2655	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2668
CH54_2669	CH54_2669		CH54_2669	2886264	2886761	+	LTXXQ motif family protein	[UNTP] COG3678 P pilus assembly/Cpx signaling pathway%2C periplasmic inhibitor/zinc-resistance associated protein	gene	gene2656	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2669
CH54_267	CH54_267		CH54_267	277708	278613	+	polysaccharide deacetylase family protein	[G] COG0726 Predicted xylanase/chitin deacetylase	gene	gene265	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_267
CH54_2670	CH54_2670		CH54_2670	2886893	2887795	+	cation diffusion facilitator transporter family protein	CDF: cation diffusion facilitator transporter family protein~[P] COG0053 Predicted Co/Zn/Cd cation transporters	gene	gene2657	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2670
CH54_2671	CH54_2671	pfkA	pfkA	2888045	2889028	+	6-phosphofructokinase	PFKA_ATP: 6-phosphofructokinase~[G] COG0205 6-phosphofructokinase	gene	gene2658	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2671
CH54_2672	CH54_2672		CH54_2672	2889242	2890231	+	sulfate ABC transporter%2C sulfate-binding family protein	3a0106s03: sulfate ABC transporter%2C sulfate-binding family protein~[P] COG1613 ABC-type sulfate transport system%2C periplasmic component	gene	gene2659	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2672
CH54_2673	CH54_2673		CH54_2673	2890470	2891381	+	papain fold toxin 1 family protein		gene	gene2660	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2673
CH54_2674	CH54_2674	tpiA	tpiA	2891402	2892169	-	triose-phosphate isomerase	tim: triose-phosphate isomerase~[G] COG0149 Triosephosphate isomerase	gene	gene2661	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2674
CH54_2675	CH54_2675		CH54_2675	2892298	2892903	-	hypothetical protein	conserved hypothetical protein	gene	gene2662	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2675
CH54_2676	CH54_2676		CH54_2676	2893063	2893500	+	hypothetical protein	conserved hypothetical protein~[S] COG3152 Predicted membrane protein	gene	gene2663	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2676
CH54_2677	CH54_2677		CH54_2677	2893555	2894301	-	oxidoreductase NAD-binding domain protein	[C] COG1018 Flavodoxin reductases (ferredoxin-NADPH reductases) family 1	gene	gene2664	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2677
CH54_2678	CH54_2678		CH54_2678	2894602	2895852	+	sugar (and other) transporter family protein	[GEPR] COG0477 Permeases of the major facilitator superfamily	gene	gene2665	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2678
CH54_2679	CH54_2679	glpX	glpX	2895953	2896963	-	fructose-1%2C6-bisphosphatase%2C class II	glpX: fructose-1%2C6-bisphosphatase%2C class II~[G] COG1494 Fructose-1%2C6-bisphosphatase/sedoheptulose 1%2C7-bisphosphatase and related proteins	gene	gene2666	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2679
CH54_268	CH54_268		CH54_268	278610	280274	+	dolichyl-phosphate-mannose-mannosyltransferase family protein	[M] COG1807 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family	gene	gene266	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_268
CH54_2680	CH54_2680	glpK	glpK	2897258	2898781	-	glycerol kinase	glycerol_kin: glycerol kinase~[C] COG0554 Glycerol kinase	gene	gene2667	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2680
CH54_2681	CH54_2681		CH54_2681	2898817	2899665	-	MIP channel s family protein	MIP: MIP channel s family protein~[G] COG0580 Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family)	gene	gene2668	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2681
CH54_2682	CH54_2682		CH54_2682	2900298	2900537	+	hypothetical protein	conserved hypothetical protein~[S] COG3074 Uncharacterized protein conserved in bacteria	gene	gene2669	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2682
CH54_2683	CH54_2683	rraA	rraA	2900665	2901150	-	regulator of ribonuclease activity A	rraA_entero: regulator of ribonuclease activity A~[H] COG0684 Demethylmenaquinone methyltransferase	gene	gene2670	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2683
CH54_2684	CH54_2684	menA	menA	2901281	2902249	-	1%2C4-dihydroxy-2-naphthoate octaprenyltransferase	menA: 1%2C4-dihydroxy-2-naphthoate octaprenyltransferase~[H] COG1575 1%2C4-dihydroxy-2-naphthoate octaprenyltransferase	gene	gene2671	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2684
CH54_2685	CH54_2685	hslU	hslU	2902346	2903677	-	ATP-dependent protease HslVU%2C ATPase subunit	hslU: ATP-dependent protease HslVU%2C ATPase subunit~[O] COG1220 ATP-dependent protease HslVU (ClpYQ)%2C ATPase subunit	gene	gene2672	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2685
CH54_2686	CH54_2686	hslV	hslV	2903690	2904238	-	ATP-dependent protease HslVU%2C peptidase subunit	ATP_dep_HslV: ATP-dependent protease HslVU%2C peptidase subunit~[O] COG5405 ATP-dependent protease HslVU (ClpYQ)%2C peptidase subunit	gene	gene2673	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2686
CH54_2687	CH54_2687	ftsN	ftsN	2904339	2905106	-	cell division protein FtsN	ftsN: cell division protein FtsN~[D] COG3087 Cell division protein	gene	gene2674	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2687
CH54_2688	CH54_2688		CH54_2688	2905271	2906299	-	bacterial regulatory s%2C lacI family protein	[K] COG1609 Transcriptional regulators	gene	gene2675	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2688
CH54_2689	CH54_2689	priA	priA	2906530	2908728	-	primosomal protein N'	priA: primosomal protein N'~[L] COG1198 Primosomal protein N' (replication factor Y) - superfamily II helicase	gene	gene2676	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2689
CH54_269	CH54_269		CH54_269	280271	280615	+	small Multidrug Resistance family protein	[GER] COG0697 Permeases of the drug/metabolite transporter (DMT) superfamily	gene	gene267	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_269
CH54_2690	CH54_2690	rpmE	rpmE	2909047	2909265	+	ribosomal protein L31	L31: ribosomal protein L31~[J] COG0254 Ribosomal protein L31	gene	gene2677	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2690
CH54_2691	CH54_2691		CH54_2691	2909358	2909675	-	met Apo-repressor%2C MetJ family protein	[KE] COG3060 Transcriptional regulator of met regulon	gene	gene2678	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2691
CH54_2692	CH54_2692	metB	metB	2910150	2911307	+	O-succinylhomoserine (thiol)-lyase	O_succ_thio_ly: O-succinylhomoserine (thiol)-lyase~[E] COG0626 Cystathionine beta-lyases/cystathionine gamma-synthases	gene	gene2679	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2692
CH54_2693	CH54_2693		CH54_2693	2911315	2913750	+	aspartate kinase domain protein	asp_kinase: aspartate kinase domain protein~[E] COG0527 Aspartokinases	gene	gene2680	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2693
CH54_2694	CH54_2694	metF	metF	2913994	2914878	+	methylenetetrahydrofolate reductase [NAD(P)H]	fadh2: methylenetetrahydrofolate reductase [NAD(P)H]~[E] COG0685 5%2C10-methylenetetrahydrofolate reductase	gene	gene2681	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2694
CH54_2695	CH54_2695		CH54_2695	2915574	2918309	-	phosphoenolpyruvate carboxylase family protein	[C] COG2352 Phosphoenolpyruvate carboxylase	gene	gene2682	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2695
CH54_2696	CH54_2696	argE	argE	2918434	2919597	-	acetylornithine deacetylase	acOrn-deacetyl: acetylornithine deacetylase~[E] COG0624 Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases	gene	gene2683	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2696
CH54_2697	CH54_2697	argC	argC	2919950	2920954	+	N-acetyl-gamma-glutamyl-phosphate reductase	argC: N-acetyl-gamma-glutamyl-phosphate reductase~[E] COG0002 Acetylglutamate semialdehyde dehydrogenase	gene	gene2684	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2697
CH54_2698	CH54_2698	argB	argB	2921018	2921794	+	acetylglutamate kinase	argB: acetylglutamate kinase~[E] COG0548 Acetylglutamate kinase	gene	gene2685	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2698
CH54_2699	CH54_2699	argH	argH	2921966	2923339	+	argininosuccinate lyase	argH: argininosuccinate lyase~[E] COG0165 Argininosuccinate lyase	gene	gene2686	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2699
CH54_27	CH54_27		CH54_27	25570	25657	+	tRNA-Ser		tRNA	gene26	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_27
CH54_270	CH54_270		CH54_270	280612	280998	+	eamA-like transporter family protein	[GER] COG0697 Permeases of the drug/metabolite transporter (DMT) superfamily	gene	gene268	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_270
CH54_2700	CH54_2700		CH54_2700	2923863	2926343	+	TonB-dependent hemoglobin/transferrin/lactoferrin receptor family protein	tonB-hemlactrns: TonB-dependent hemoglobin/transferrin/lactoferrin receptor family protein~[P] COG1629 Outer membrane receptor proteins%2C mostly Fe transport	gene	gene2687	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2700
CH54_2701	CH54_2701		CH54_2701	2926484	2927101	+	heme-binding A family protein		gene	gene2688	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2701
CH54_2702	CH54_2702		CH54_2702	2927275	2927916	+	heme-binding A family protein		gene	gene2689	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2702
CH54_2703	CH54_2703		CH54_2703	2928098	2928766	+	heme-binding A family protein		gene	gene2690	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2703
CH54_2704	CH54_2704		CH54_2704	2928783	2929475	+	heme-binding A family protein		gene	gene2691	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2704
CH54_2705	CH54_2705		CH54_2705	2929641	2931446	+	type I secretion system ATPase family protein	type_I_sec_PrtD: type I secretion system ATPase family protein~[R] COG4618 ABC-type protease/lipase transport system%2C ATPase and permease components	gene	gene2692	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2705
CH54_2706	CH54_2706		CH54_2706	2931480	2932811	+	type I secretion membrane fusion%2C HlyD family protein	type_I_hlyD: type I secretion membrane fusion%2C HlyD family protein~[M] COG0845 Membrane-fusion protein	gene	gene2693	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2706
CH54_2707	CH54_2707		CH54_2707	2932849	2933688	+	hypothetical protein	tonB_Cterm: TonB family C-terminal domain protein~[M] COG0810 Periplasmic protein TonB%2C links inner and outer membranes	gene	gene2694	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2707
CH54_2708	CH54_2708		CH54_2708	2933896	2935359	-	pyridine nucleotide-disulfide oxidoreductase family protein	[C] COG1249 Pyruvate/2-oxoglutarate dehydrogenase complex%2C dihydrolipoamide dehydrogenase (E3) component%2C and related enzymes	gene	gene2695	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2708
CH54_2709	CH54_2709		CH54_2709	2935559	2936290	-	hypothetical protein	glutathione S-transferase%2C N-terminal domain protein~[O] COG0678 Peroxiredoxin	gene	gene2696	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2709
CH54_271	CH54_271		CH54_271	281306	281770	+	nlpC/P60 family protein	[M] COG0791 Cell wall-associated hydrolases (invasion-associated proteins)	gene	gene269	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_271
CH54_2710	CH54_2710		CH54_2710	2937353	2938753	-	pyridine nucleotide-disulfide oxidoreductase family protein	[C] COG1249 Pyruvate/2-oxoglutarate dehydrogenase complex%2C dihydrolipoamide dehydrogenase (E3) component%2C and related enzymes	gene	gene2698	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2710
CH54_2711	CH54_2711		CH54_2711	2936438	2937370	+	bacterial regulatory helix-turn-helix%2C lysR family protein	[K] COG0583 Transcriptional regulator	gene	gene2697	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2711
CH54_2712	CH54_2712		CH54_2712	2938971	2939603	+	bacterial regulatory s%2C tetR family protein	[K] COG1309 Transcriptional regulator	gene	gene2699	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2712
CH54_2713	CH54_2713		CH54_2713	2939626	2940066	+	hypothetical protein	conserved hypothetical protein	gene	gene2700	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2713
CH54_2714	CH54_2714	trmA	trmA	2940147	2941250	-	tRNA (uracil(54)-C(5))-methyltransferase	trmA_only: tRNA (uracil(54)-C(5))-methyltransferase~[J] COG2265 SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase	gene	gene2701	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2714
CH54_2715	CH54_2715	btuB	btuB	2941664	2943556	+	TonB-dependent vitamin B12 receptor	tonB-B12: TonB-dependent vitamin B12 receptor~[H] COG4206 Outer membrane cobalamin receptor protein	gene	gene2702	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2715
CH54_2716	CH54_2716	murI	murI	2943501	2944364	+	glutamate racemase	glut_race: glutamate racemase~[M] COG0796 Glutamate racemase	gene	gene2703	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2716
CH54_2717	CH54_2717		CH54_2717	2944821	2946351	+	16S ribosomal RNA		rRNA	gene2704	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2717
CH54_2718	CH54_2718		CH54_2718	2946459	2946535	+	tRNA-Ile		tRNA	gene2705	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2718
CH54_2719	CH54_2719		CH54_2719	2946646	2946721	+	tRNA-Ala		tRNA	gene2706	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2719
CH54_272	CH54_272		CH54_272	282022	283038	+	lipoyltransferase and lipoate-ligase family protein	lipoyltrans: lipoyltransferase and lipoate-ligase family protein~[H] COG0095 Lipoate-protein ligase A	gene	gene270	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_272
CH54_2720	CH54_2720		CH54_2720	2946932	2949836	+	23S ribosomal RNA		rRNA	gene2707	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2720
CH54_2721	CH54_2721		CH54_2721	2949954	2950068	+	5S ribosomal RNA		rRNA	gene2708	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2721
CH54_2722	CH54_2722		CH54_2722	2950193	2950269	+	tRNA-Asp		tRNA	gene2709	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2722
CH54_2723	CH54_2723		CH54_2723	2950323	2950398	+	tRNA-Trp		tRNA	gene2710	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2723
CH54_2724	CH54_2724		CH54_2724	2951097	2951978	-	bacterial regulatory helix-turn-helix%2C lysR family protein	[K] COG0583 Transcriptional regulator	gene	gene2711	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2724
CH54_2725	CH54_2725		CH54_2725	2952097	2952435	+	hypothetical protein	conserved hypothetical protein~[S] COG3085 Uncharacterized protein conserved in bacteria	gene	gene2712	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2725
CH54_2726	CH54_2726		CH54_2726	2952670	2954193	-	sigma-54 interaction domain protein	[O] COG0606 Predicted ATPase with chaperone activity	gene	gene2713	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2726
CH54_2727	CH54_2727	ilvB	ilvB	2954766	2956412	+	acetolactate synthase%2C large subunit%2C biosynthetic type	acolac_lg: acetolactate synthase%2C large subunit%2C biosynthetic type~[EH] COG0028 Thiamine pyrophosphate-requiring enzymes [acetolactate synthase%2C pyruvate dehydrogenase (cytochrome)%2C glyoxylate carboligase%2C phosphonopyruvate decarboxylase]	gene	gene2714	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2727
CH54_2728	CH54_2728		CH54_2728	2956409	2956684	+	ACT domain protein	[S] COG3978 Acetolactate synthase (isozyme II)%2C small (regulatory) subunit	gene	gene2715	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2728
CH54_2729	CH54_2729	ilvE	ilvE	2956707	2957633	+	branched-chain amino acid aminotransferase	ilvE_I: branched-chain amino acid aminotransferase~[EH] COG0115 Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase	gene	gene2716	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2729
CH54_273	CH54_273		CH54_273	283038	284498	+	hypothetical protein	conserved hypothetical protein~[S] COG0397 Uncharacterized conserved protein	gene	gene271	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_273
CH54_2730	CH54_2730	ilvD	ilvD	2957745	2959595	+	dihydroxy-acid dehydratase	ilvD: dihydroxy-acid dehydratase~[EG] COG0129 Dihydroxyacid dehydratase/phosphogluconate dehydratase	gene	gene2717	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2730
CH54_2731	CH54_2731	ilvA	ilvA	2959601	2961145	+	threonine ammonia-lyase%2C biosynthetic	ilvA_2Cterm: threonine ammonia-lyase%2C biosynthetic~[E] COG1171 Threonine dehydratase	gene	gene2718	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2731
CH54_2732	CH54_2732		CH54_2732	2961190	2962071	-	bacterial regulatory helix-turn-helix%2C lysR family protein	[K] COG0583 Transcriptional regulator	gene	gene2719	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2732
CH54_2733	CH54_2733	ilvC	ilvC	2962327	2963805	+	ketol-acid reductoisomerase	ilvC: ketol-acid reductoisomerase~[EH] COG0059 Ketol-acid reductoisomerase	gene	gene2720	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2733
CH54_2734	CH54_2734		CH54_2734	2964216	2967164	+	DNase/tRNase domain of colicin-like bacteriocin family protein		gene	gene2721	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2734
CH54_2735	CH54_2735		CH54_2735	2967166	2967423	+	colicin immunity / pyocin immunity family protein		gene	gene2722	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2735
CH54_2736	CH54_2736		CH54_2736	2967864	2968118	+	colicin immunity / pyocin immunity family protein		gene	gene2723	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2736
CH54_2737	CH54_2737		CH54_2737	2968273	2968530	+	colicin immunity / pyocin immunity family protein		gene	gene2724	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2737
CH54_2738	CH54_2738		CH54_2738	2968905	2969267	+	phage antitermination Q family protein		gene	gene2725	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2738
CH54_2739	CH54_2739		CH54_2739	2969802	2970560	-	hypothetical protein	pili and flagellar-assembly chaperone%2C PapD N-terminal domain protein~[NU] COG3121 P pilus assembly protein%2C chaperone PapD	gene	gene2726	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2739
CH54_274	CH54_274		CH54_274	284546	285397	-	periplasmic binding family protein	[P] COG4558 ABC-type hemin transport system%2C periplasmic component	gene	gene272	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_274
CH54_2740	CH54_2740		CH54_2740	2970526	2971893	-	fimbrial family protein		gene	gene2727	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2740
CH54_2741	CH54_2741		CH54_2741	2971911	2974595	-	hypothetical protein	papC N-terminal domain protein~[NU] COG3188 P pilus assembly protein%2C porin PapC	gene	gene2728	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2741
CH54_2742	CH54_2742		CH54_2742	2974652	2975380	-	hypothetical protein	pili and flagellar-assembly chaperone%2C PapD N-terminal domain protein~[NU] COG3121 P pilus assembly protein%2C chaperone PapD	gene	gene2729	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2742
CH54_2743	CH54_2743		CH54_2743	2975513	2976043	-	hypothetical protein	[NU] COG3539 P pilus assembly protein%2C pilin FimA	gene	gene2730	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2743
CH54_2744	CH54_2744		CH54_2744	2976656	2976937	-	PPIC-type PPIASE domain protein	[O] COG0760 Parvulin-like peptidyl-prolyl isomerase	gene	gene2731	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2744
CH54_2745	CH54_2745	rep	rep	2977200	2979224	+	ATP-dependent DNA helicase Rep	rep: ATP-dependent DNA helicase Rep~[L] COG0210 Superfamily I DNA and RNA helicases	gene	gene2732	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2745
CH54_2746	CH54_2746		CH54_2746	2979257	2980753	-	ppx/GppA phosphatase family protein	[FP] COG0248 Exopolyphosphatase	gene	gene2733	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2746
CH54_2747	CH54_2747		CH54_2747	2980757	2982043	-	DEAD/DEAH box helicase family protein	[LKJ] COG0513 Superfamily II DNA and RNA helicases	gene	gene2734	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2747
CH54_2748	CH54_2748	trxA	trxA	2982162	2982488	+	thioredoxin	thioredoxin: thioredoxin~[OC] COG0526 Thiol-disulfide isomerase and thioredoxins	gene	gene2735	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2748
CH54_2749	CH54_2749	rho	rho	2983126	2984385	+	Transcription termination factor	rho: transcription termination factor Rho~[K] COG1158 Transcription termination factor	gene	gene2736	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2749
CH54_275	CH54_275		CH54_275	285390	286448	-	hemin-degrading HemS.ChuX domain protein	[P] COG3720 Putative heme degradation protein	gene	gene273	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_275
CH54_2750	CH54_2750	wecA	wecA	2984772	2985869	+	undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphatetransferase	ECA_wecA: undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphatetransferase~[M] COG0472 UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase	gene	gene2737	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2750
CH54_2751	CH54_2751		CH54_2751	2985890	2986966	+	chain length determinant family protein	[M] COG3765 Chain length determinant protein	gene	gene2738	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2751
CH54_2752	CH54_2752		CH54_2752	2987098	2988228	+	UDP-N-acetylglucosamine 2-epimerase	wecB: UDP-N-acetylglucosamine 2-epimerase~[M] COG0381 UDP-N-acetylglucosamine 2-epimerase	gene	gene2739	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2752
CH54_2753	CH54_2753		CH54_2753	2988225	2989487	+	nucleotide sugar dehydrogenase family protein	NDP-sugDHase: nucleotide sugar dehydrogenase family protein~[M] COG0677 UDP-N-acetyl-D-mannosaminuronate dehydrogenase	gene	gene2740	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2753
CH54_2754	CH54_2754	rfbB	rfbB	2989478	2990551	+	dTDP-glucose 4%2C6-dehydratase	dTDP_gluc_dehyt: dTDP-glucose 4%2C6-dehydratase~[M] COG1088 dTDP-D-glucose 4%2C6-dehydratase	gene	gene2741	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2754
CH54_2755	CH54_2755	rfbA	rfbA	2990646	2991527	+	glucose-1-phosphate thymidylyltransferase	rmlA: glucose-1-phosphate thymidylyltransferase~[M] COG1209 dTDP-glucose pyrophosphorylase	gene	gene2742	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2755
CH54_2756	CH54_2756	wecD	wecD	2991505	2992242	+	TDP-D-fucosamine acetyltransferase	wecD_rffC: TDP-D-fucosamine acetyltransferase~[KR] COG0454 Histone acetyltransferase HPA2 and related acetyltransferases	gene	gene2743	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2756
CH54_2757	CH54_2757	wecE	wecE	2992244	2993374	+	TDP-4-keto-6-deoxy-D-glucose transaminase family protein	ECA_wecE: TDP-4-keto-6-deoxy-D-glucose transaminase family protein~[M] COG0399 Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis	gene	gene2744	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2757
CH54_2758	CH54_2758		CH54_2758	2993376	2994632	+	polysaccharide biosynthesis family protein	[R] COG2244 Membrane protein involved in the export of O-antigen and teichoic acid	gene	gene2745	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2758
CH54_2759	CH54_2759		CH54_2759	2994655	2995740	+	4-alpha-L-fucosyltransferase glycosyl transferase group 56 family protein		gene	gene2746	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2759
CH54_276	CH54_276		CH54_276	286564	288600	-	TonB-dependent hemoglobin/transferrin/lactoferrin receptor family protein	tonB-hemlactrns: TonB-dependent hemoglobin/transferrin/lactoferrin receptor family protein~[P] COG1629 Outer membrane receptor proteins%2C mostly Fe transport	gene	gene274	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_276
CH54_2760	CH54_2760		CH54_2760	2995737	2997113	+	wzyE family protein		gene	gene2747	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2760
CH54_2761	CH54_2761		CH54_2761	2997122	2997898	+	glycosyltransferase%2C WecB/TagA/CpsF family protein	wecG_tagA_cpsF: glycosyltransferase%2C WecB/TagA/CpsF family protein~[M] COG1922 Teichoic acid biosynthesis proteins	gene	gene2748	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2761
CH54_2762	CH54_2762		CH54_2762	2998234	2999625	+	amino acid permease family protein	[E] COG1113 Gamma-aminobutyrate permease and related permeases	gene	gene2749	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2762
CH54_2763	CH54_2763		CH54_2763	2999774	2999850	+	tRNA-Arg		tRNA	gene2750	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2763
CH54_2764	CH54_2764		CH54_2764	2999934	3000009	+	tRNA-His		tRNA	gene2751	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2764
CH54_2766	CH54_2766		CH54_2766	3000025	3000111	+	tRNA-Leu		tRNA	gene2752	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2766
CH54_2767	CH54_2767		CH54_2767	3000187	3000263	+	tRNA-Pro		tRNA	gene2753	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2767
CH54_2768	CH54_2768		CH54_2768	3000886	3001020	-	hypothetical protein		gene	gene2754	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2768
CH54_2769	CH54_2769		CH54_2769	3001606	3002805	-	tetratricopeptide repeat family protein	[H] COG3071 Uncharacterized enzyme of heme biosynthesis	gene	gene2755	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2769
CH54_277	CH54_277		CH54_277	289171	290226	-	3-deoxy-7-phosphoheptulonate synthase	aroFGH: 3-deoxy-7-phosphoheptulonate synthase~[E] COG0722 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase	gene	gene275	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_277
CH54_2770	CH54_2770		CH54_2770	3002808	3003932	-	hemX family protein	[H] COG2959 Uncharacterized enzyme of heme biosynthesis	gene	gene2756	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2770
CH54_2771	CH54_2771		CH54_2771	3003962	3004711	-	uroporphyrinogen-III synthase HemD family protein	[H] COG1587 Uroporphyrinogen-III synthase	gene	gene2757	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2771
CH54_2772	CH54_2772	hemC	hemC	3004708	3005649	-	hydroxymethylbilane synthase	hemC: hydroxymethylbilane synthase~[H] COG0181 Porphobilinogen deaminase	gene	gene2758	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2772
CH54_2773	CH54_2773		CH54_2773	3006141	3008687	+	adenylate cyclase%2C class-I family protein	[F] COG3072 Adenylate cyclase	gene	gene2759	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2773
CH54_2774	CH54_2774	cyaY	cyaY	3008849	3009169	-	iron donor protein CyaY	feS_CyaY: iron donor protein CyaY~[P] COG1965 Protein implicated in iron transport%2C frataxin homolog	gene	gene2760	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2774
CH54_2775	CH54_2775		CH54_2775	3009283	3009486	+	prokaryotic lipo-attachment site family protein	[N] COG5567 Predicted small periplasmic lipoprotein	gene	gene2761	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2775
CH54_2776	CH54_2776	dapF	dapF	3009559	3010383	+	diaminopimelate epimerase	dapF: diaminopimelate epimerase~[E] COG0253 Diaminopimelate epimerase	gene	gene2762	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2776
CH54_2777	CH54_2777		CH54_2777	3010535	3011239	+	hypothetical protein	conserved hypothetical protein~[S] COG3159 Uncharacterized protein conserved in bacteria	gene	gene2763	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2777
CH54_2778	CH54_2778	xerC	xerC	3011236	3012147	+	tyrosine recombinase XerC	recomb_XerC: tyrosine recombinase XerC~[L] COG4973 Site-specific recombinase XerC	gene	gene2764	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2778
CH54_2779	CH54_2779		CH54_2779	3012147	3012863	+	HAD hydrolase%2C IA%2C variant 1 family protein	HAD-SF-IA-v1: HAD hydrolase%2C IA%2C variant 1 family protein~[R] COG1011 Predicted hydrolase (HAD superfamily)	gene	gene2765	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2779
CH54_278	CH54_278		CH54_278	290405	291226	-	kinase/pyrophosphorylase family protein	[S] COG1806 Uncharacterized protein conserved in bacteria	gene	gene276	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_278
CH54_2780	CH54_2780	uvrD	uvrD	3012964	3015126	+	DNA helicase II	uvrD: DNA helicase II~[L] COG0210 Superfamily I DNA and RNA helicases	gene	gene2766	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2780
CH54_2781	CH54_2781		CH54_2781	3015186	3015842	-	bacterial regulatory s%2C tetR family protein	[K] COG1309 Transcriptional regulator	gene	gene2767	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2781
CH54_2782	CH54_2782		CH54_2782	3016062	3017282	+	hypothetical protein	conserved hypothetical protein~[S] COG5441 Uncharacterized conserved protein	gene	gene2768	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2782
CH54_2783	CH54_2783		CH54_2783	3017321	3018151	+	nitronate monooxygenase family protein	[R] COG5564 Predicted TIM-barrel enzyme%2C possibly a dioxygenase	gene	gene2769	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2783
CH54_2784	CH54_2784		CH54_2784	3018271	3018741	-	cupin fold metallo%2C WbuC family protein	cupin_WbuC: cupin fold metallo%2C WbuC family protein	gene	gene2770	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2784
CH54_2785	CH54_2785	corA	corA	3019439	3020389	+	magnesium and cobalt transport protein CorA	corA: magnesium and cobalt transport protein CorA~[P] COG0598 Mg2+ and Co2+ transporters	gene	gene2771	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2785
CH54_2786	CH54_2786		CH54_2786	3020557	3021447	-	eamA-like transporter family protein	[R] COG2962 Predicted permeases	gene	gene2772	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2786
CH54_2787	CH54_2787		CH54_2787	3021527	3021997	-	hypothetical protein	conserved hypothetical protein~[Q] COG2050 Uncharacterized protein%2C possibly involved in aromatic compounds catabolism	gene	gene2773	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2787
CH54_2788	CH54_2788		CH54_2788	3022178	3023056	+	phospholipase A1 family protein	[M] COG2829 Outer membrane phospholipase A	gene	gene2774	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2788
CH54_2789	CH54_2789	recQ	recQ	3023133	3024965	+	ATP-dependent DNA helicase RecQ	recQ: ATP-dependent DNA helicase RecQ~[L] COG0514 Superfamily II DNA helicase	gene	gene2775	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2789
CH54_279	CH54_279	ppsA	ppsA	291452	293833	+	phosphoenolpyruvate synthase	PEP_synth: phosphoenolpyruvate synthase~[G] COG0574 Phosphoenolpyruvate synthase/pyruvate phosphate dikinase	gene	gene277	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_279
CH54_2790	CH54_2790		CH54_2790	3024998	3025618	+	homoserine/Threonine efflux family protein	2A76: homoserine/Threonine efflux family protein~[E] COG1280 Putative threonine efflux protein	gene	gene2776	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2790
CH54_2791	CH54_2791		CH54_2791	3025667	3026287	-	lysE type translocator family protein	[E] COG1280 Putative threonine efflux protein	gene	gene2777	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2791
CH54_2792	CH54_2792		CH54_2792	3026493	3027533	+	prolyl oligopeptidase family protein	[I] COG2267 Lysophospholipase	gene	gene2778	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2792
CH54_2793	CH54_2793		CH54_2793	3027568	3028377	+	HAD hydrolase%2C IIB family protein	HAD-SF-IIB: HAD hydrolase%2C IIB family protein~[R] COG0561 Predicted hydrolases of the HAD superfamily	gene	gene2779	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2793
CH54_2794	CH54_2794		CH54_2794	3028475	3029581	-	glycerophosphoryl diester phosphodiesterase family protein	[C] COG0584 Glycerophosphoryl diester phosphodiesterase	gene	gene2780	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2794
CH54_2795	CH54_2795	glpT	glpT	3029685	3031049	-	glycerol-3-phosphate transporter	glpT: glycerol-3-phosphate transporter~[G] COG2271 Sugar phosphate permease	gene	gene2781	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2795
CH54_2796	CH54_2796	glpA	glpA	3031435	3033102	+	glycerol-3-phosphate dehydrogenase%2C anaerobic%2C A subunit	glycerol3P_GlpA: glycerol-3-phosphate dehydrogenase%2C anaerobic%2C A subunit~[C] COG0578 Glycerol-3-phosphate dehydrogenase	gene	gene2782	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2796
CH54_2797	CH54_2797	glpB	glpB	3033092	3034366	+	glycerol-3-phosphate dehydrogenase%2C anaerobic%2C B subunit	glycerol3P_GlpB: glycerol-3-phosphate dehydrogenase%2C anaerobic%2C B subunit~[E] COG3075 Anaerobic glycerol-3-phosphate dehydrogenase	gene	gene2783	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2797
CH54_2798	CH54_2798	glpC	glpC	3034363	3035649	+	glycerol-3-phosphate dehydrogenase%2C anaerobic%2C C subunit	glycerol3P_GlpC: glycerol-3-phosphate dehydrogenase%2C anaerobic%2C C subunit~[C] COG0247 Fe-S oxidoreductase	gene	gene2784	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2798
CH54_2799	CH54_2799		CH54_2799	3035835	3036374	-	putative lipoprotein		gene	gene2785	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2799
CH54_28	CH54_28	cas1	cas1	27014	27994	+	CRISPR-associated endonuclease Cas1	cas1: CRISPR-associated endonuclease Cas1~[L] COG1518 Uncharacterized protein predicted to be involved in DNA repair	gene	gene27	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_28
CH54_280	CH54_280		CH54_280	294402	295505	-	hypothetical protein	conserved hypothetical protein~[R] COG0628 Predicted permease	gene	gene278	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_280
CH54_2800	CH54_2800		CH54_2800	3036552	3037232	-	hypothetical protein	conserved hypothetical integral membrane family protein~[S] COG1738 Uncharacterized conserved protein	gene	gene2786	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2800
CH54_2801	CH54_2801		CH54_2801	3037499	3037753	+	sulfurtransferase TusA family protein	[O] COG0425 Predicted redox protein%2C regulator of disulfide bond formation	gene	gene2787	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2801
CH54_2802	CH54_2802	cadA	cadA	3037830	3040157	-	cadmium-translocating P-type ATPase	ATPase-IB2_Cd: cadmium-translocating P-type ATPase~[P] COG2217 Cation transport ATPase	gene	gene2788	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2802
CH54_2803	CH54_2803		CH54_2803	3040423	3041049	-	yhhN-like family protein	[S] COG3714 Predicted membrane protein	gene	gene2789	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2803
CH54_2804	CH54_2804		CH54_2804	3041337	3041657	+	hypothetical protein	conserved hypothetical protein~[S] COG4517 Uncharacterized protein conserved in bacteria	gene	gene2790	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2804
CH54_2805	CH54_2805		CH54_2805	3041697	3042080	+	hypothetical protein	conserved hypothetical protein	gene	gene2791	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2805
CH54_2806	CH54_2806		CH54_2806	3042125	3042397	-	hypothetical protein	conserved hypothetical protein~[S] COG3776 Predicted membrane protein	gene	gene2792	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2806
CH54_2807	CH54_2807	rsmD	rsmD	3042387	3043040	-	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	[L] COG0742 N6-adenine-specific methylase	gene	gene2793	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2807
CH54_2808	CH54_2808	ftsY	ftsY	3043259	3044782	+	signal recognition particle-docking protein FtsY	ftsY: signal recognition particle-docking protein FtsY~[U] COG0552 Signal recognition particle GTPase	gene	gene2794	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2808
CH54_2809	CH54_2809	ftsE	ftsE	3044788	3045456	+	cell division ATP-binding protein FtsE	ftsE: cell division ATP-binding protein FtsE~[D] COG2884 Predicted ATPase involved in cell division	gene	gene2795	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2809
CH54_281	CH54_281		CH54_281	295951	299007	+	hypothetical protein	FAD linked oxidase%2C C-terminal domain protein~[C] COG0277 FAD/FMN-containing dehydrogenases	gene	gene279	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_281
CH54_2810	CH54_2810	ftsX	ftsX	3045446	3046402	+	putative protein insertion permease FtsX	ftsX: putative protein insertion permease FtsX~[D] COG2177 Cell division protein	gene	gene2796	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2810
CH54_2811	CH54_2811	rpoH	rpoH	3046686	3047543	+	alternative sigma factor RpoH	rpoH_proteo: alternative sigma factor RpoH~[K] COG0568 DNA-directed RNA polymerase%2C sigma subunit (sigma70/sigma32)	gene	gene2797	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2811
CH54_2812	CH54_2812		CH54_2812	3048040	3050403	+	hypothetical protein		gene	gene2798	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2812
CH54_2813	CH54_2813		CH54_2813	3050408	3050800	-	acetyltransferase domain protein		gene	gene2799	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2813
CH54_2814	CH54_2814		CH54_2814	3051222	3052337	+	receptor ligand binding region family protein	[E] COG0683 ABC-type branched-chain amino acid transport systems%2C periplasmic component	gene	gene2800	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2814
CH54_2815	CH54_2815		CH54_2815	3052502	3053428	+	branched-chain amino acid transport system / permease component family protein	[E] COG0559 Branched-chain amino acid ABC-type transport system%2C permease components	gene	gene2801	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2815
CH54_2816	CH54_2816		CH54_2816	3053425	3054711	+	branched-chain amino acid transport system / permease component family protein	[E] COG4177 ABC-type branched-chain amino acid transport system%2C permease component	gene	gene2802	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2816
CH54_2817	CH54_2817		CH54_2817	3054708	3055475	+	ABC transporter family protein	[E] COG0411 ABC-type branched-chain amino acid transport systems%2C ATPase component	gene	gene2803	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2817
CH54_2818	CH54_2818		CH54_2818	3055536	3056237	+	ABC transporter family protein	[E] COG0410 ABC-type branched-chain amino acid transport systems%2C ATPase component	gene	gene2804	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2818
CH54_2819	CH54_2819		CH54_2819	3056310	3057410	-	putative exported protein		gene	gene2805	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2819
CH54_282	CH54_282		CH54_282	299058	299477	+	hypothetical protein	conserved hypothetical protein~[Q] COG2050 Uncharacterized protein%2C possibly involved in aromatic compounds catabolism	gene	gene280	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_282
CH54_2820	CH54_2820		CH54_2820	3057444	3057962	-	putative exported protein		gene	gene2806	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2820
CH54_2821	CH54_2821		CH54_2821	3057984	3058631	-	putative exported protein		gene	gene2807	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2821
CH54_2822	CH54_2822		CH54_2822	3058603	3059286	-	hypothetical protein	pili and flagellar-assembly chaperone%2C PapD N-terminal domain protein	gene	gene2808	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2822
CH54_2823	CH54_2823		CH54_2823	3059289	3061604	-	hypothetical protein		gene	gene2809	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2823
CH54_2824	CH54_2824		CH54_2824	3061776	3062264	-	CS1 type fimbrial major subunit		gene	gene2810	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2824
CH54_2825	CH54_2825		CH54_2825	3062775	3064094	+	bacterial extracellular solute-binding family protein	[G] COG1653 ABC-type sugar transport system%2C periplasmic component	gene	gene2811	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2825
CH54_2826	CH54_2826		CH54_2826	3064307	3065194	+	binding--dependent transport system inner membrane component family protein	[G] COG1175 ABC-type sugar transport systems%2C permease components	gene	gene2812	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2826
CH54_2827	CH54_2827		CH54_2827	3065191	3066036	+	binding--dependent transport system inner membrane component family protein	[G] COG0395 ABC-type sugar transport system%2C permease component	gene	gene2813	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2827
CH54_2828	CH54_2828		CH54_2828	3066043	3067131	+	ABC transporter family protein	[G] COG3839 ABC-type sugar transport systems%2C ATPase components	gene	gene2814	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2828
CH54_2829	CH54_2829		CH54_2829	3067128	3067868	+	glycerophosphoryl diester phosphodiesterase family protein	[C] COG0584 Glycerophosphoryl diester phosphodiesterase	gene	gene2815	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2829
CH54_283	CH54_283		CH54_283	300039	300410	+	iron-sulfur cluster assembly accessory family protein	[S] COG0316 Uncharacterized conserved protein	gene	gene281	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_283
CH54_2830	CH54_2830		CH54_2830	3068001	3068960	+	membrane transport family protein	[R] COG0679 Predicted permeases	gene	gene2816	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2830
CH54_2831	CH54_2831		CH54_2831	3069902	3070855	-	bacterial regulatory helix-turn-helix%2C lysR family protein	[K] COG0583 Transcriptional regulator	gene	gene2818	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2831
CH54_2832	CH54_2832	yedA	yedA	3069115	3070014	+	carboxylate/amino acid/amine transporter family protein	2A78: carboxylate/amino acid/amine transporter family protein~[GER] COG0697 Permeases of the drug/metabolite transporter (DMT) superfamily	gene	gene2817	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2832
CH54_2833	CH54_2833	metE	metE	3070961	3073237	+	5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase	met_syn_B12ind: 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase~[E] COG0620 Methionine synthase II (cobalamin-independent)	gene	gene2819	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2833
CH54_2834	CH54_2834		CH54_2834	3073459	3074316	-	chlorophyllase family protein	[Q] COG0412 Dienelactone hydrolase and related enzymes	gene	gene2820	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2834
CH54_2835	CH54_2835	udp	udp	3074763	3075524	+	uridine phosphorylase	uridine-psphlse: uridine phosphorylase~[F] COG2820 Uridine phosphorylase	gene	gene2821	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2835
CH54_2836	CH54_2836		CH54_2836	3075670	3076467	+	tyrosine phosphatase family protein	[T] COG2365 Protein tyrosine/serine phosphatase	gene	gene2822	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2836
CH54_2837	CH54_2837		CH54_2837	3076656	3078467	+	carbon starvation CstA family protein	[T] COG1966 Carbon starvation protein%2C predicted membrane protein	gene	gene2823	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2837
CH54_2838	CH54_2838		CH54_2838	3078596	3079126	+	hypothetical protein	conserved hypothetical protein~[S] COG0586 Uncharacterized membrane-associated protein	gene	gene2824	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2838
CH54_2839	CH54_2839		CH54_2839	3079327	3080853	+	rmuC family protein	[S] COG1322 Uncharacterized protein conserved in bacteria	gene	gene2825	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2839
CH54_284	CH54_284	sufB	sufB	300425	301939	+	FeS assembly protein SufB	sufB: FeS assembly protein SufB~[O] COG0719 ABC-type transport system involved in Fe-S cluster assembly%2C permease component	gene	gene282	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_284
CH54_2840	CH54_2840		CH54_2840	3080987	3081742	+	ubiquinone/menaquinone biosynthesis methyltransferase family protein	menG_MenH_UbiE: ubiquinone/menaquinone biosynthesis methyltransferase family protein~[H] COG2226 Methylase involved in ubiquinone/menaquinone biosynthesis	gene	gene2826	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2840
CH54_2841	CH54_2841		CH54_2841	3081756	3082409	+	SCP-2 sterol transfer family protein	[S] COG3165 Uncharacterized protein conserved in bacteria	gene	gene2827	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2841
CH54_2842	CH54_2842	ubiB	ubiB	3082406	3084037	+	2-polyprenylphenol 6-hydroxylase	ubiB: 2-polyprenylphenol 6-hydroxylase~[R] COG0661 Predicted unusual protein kinase	gene	gene2828	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2842
CH54_2843	CH54_2843	tatA	tatA	3084239	3084505	+	twin arginine-targeting translocase%2C TatA/E family protein	tatAE: twin arginine-targeting translocase%2C TatA/E family protein~[U] COG1826 Sec-independent protein secretion pathway components	gene	gene2829	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2843
CH54_2844	CH54_2844	tatB	tatB	3084509	3085165	+	twin arginine-targeting protein translocase TatB	tatB: twin arginine-targeting protein translocase TatB~[U] COG1826 Sec-independent protein secretion pathway components	gene	gene2830	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2844
CH54_2845	CH54_2845	tatC	tatC	3085168	3085947	+	twin arginine-targeting protein translocase TatC	tatC: twin arginine-targeting protein translocase TatC~[U] COG0805 Sec-independent protein secretion pathway component TatC	gene	gene2831	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2845
CH54_2846	CH54_2846		CH54_2846	3086003	3086785	+	tatD related DNase family protein	[L] COG0084 Mg-dependent DNase	gene	gene2832	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2846
CH54_2847	CH54_2847		CH54_2847	3086800	3087822	+	delta-aminolevulinic acid dehydratase family protein	[H] COG0113 Delta-aminolevulinic acid dehydratase	gene	gene2833	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2847
CH54_2848	CH54_2848	rfaH	rfaH	3087893	3088381	-	transcription elongation factor/antiterminator RfaH	rfaH: transcription elongation factor/antiterminator RfaH~[K] COG0250 Transcription antiterminator	gene	gene2834	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2848
CH54_2849	CH54_2849		CH54_2849	3088630	3090150	+	decarboxylase%2C UbiD family protein	[H] COG0043 3-polyprenyl-4-hydroxybenzoate decarboxylase and related decarboxylases	gene	gene2835	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2849
CH54_285	CH54_285	sufC	sufC	301996	302742	+	FeS assembly ATPase SufC	sufC: FeS assembly ATPase SufC~[O] COG0396 ABC-type transport system involved in Fe-S cluster assembly%2C ATPase component	gene	gene283	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_285
CH54_2850	CH54_2850		CH54_2850	3090205	3090906	+	oxidoreductase NAD-binding domain protein	[HC] COG0543 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases	gene	gene2836	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2850
CH54_2851	CH54_2851	fadA	fadA	3091004	3092167	-	acetyl-CoA C-acyltransferase FadA	fadA: acetyl-CoA C-acyltransferase FadA~[I] COG0183 Acetyl-CoA acetyltransferase	gene	gene2837	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2851
CH54_2852	CH54_2852	fadB	fadB	3092179	3094368	-	fatty oxidation complex%2C alpha subunit FadB	fadB: fatty oxidation complex%2C alpha subunit FadB~[I] COG1250 3-hydroxyacyl-CoA dehydrogenase	gene	gene2838	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2852
CH54_2853	CH54_2853		CH54_2853	3094545	3094670	+	hypothetical protein	conserved hypothetical protein	gene	gene2839	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2853
CH54_2854	CH54_2854		CH54_2854	3094695	3096026	+	metallopeptidase M24 family protein	[E] COG0006 Xaa-Pro aminopeptidase	gene	gene2840	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2854
CH54_2855	CH54_2855		CH54_2855	3096026	3096640	+	hypothetical protein	conserved hypothetical protein~[S] COG1739 Uncharacterized conserved protein	gene	gene2841	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2855
CH54_2856	CH54_2856		CH54_2856	3096677	3098128	+	potassium uptake%2C TrkH family protein	2a38: potassium uptake%2C TrkH family protein~[P] COG0168 Trk-type K+ transport systems%2C membrane components	gene	gene2842	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2856
CH54_2857	CH54_2857		CH54_2857	3098150	3098683	+	flavodoxin domain protein	[CH] COG4635 Flavodoxin	gene	gene2843	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2857
CH54_2858	CH54_2858		CH54_2858	3099158	3100688	+	16S ribosomal RNA		rRNA	gene2844	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2858
CH54_2859	CH54_2859		CH54_2859	3100829	3100904	+	tRNA-Glu		tRNA	gene2845	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2859
CH54_286	CH54_286	sufD	sufD	302717	304048	+	FeS assembly protein SufD	sufD: FeS assembly protein SufD~[O] COG0719 ABC-type transport system involved in Fe-S cluster assembly%2C permease component	gene	gene284	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_286
CH54_2860	CH54_2860		CH54_2860	3101145	3104049	+	23S ribosomal RNA		rRNA	gene2846	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2860
CH54_2861	CH54_2861		CH54_2861	3104167	3104281	+	5S ribosomal RNA		rRNA	gene2847	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2861
CH54_2862	CH54_2862	murB	murB	3104464	3105501	+	UDP-N-acetylenolpyruvoylglucosamine reductase	murB: UDP-N-acetylenolpyruvoylglucosamine reductase~[M] COG0812 UDP-N-acetylmuramate dehydrogenase	gene	gene2848	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2862
CH54_2863	CH54_2863		CH54_2863	3105498	3106457	+	biotin operon repressor	birA_repr_reg: biotin operon repressor~[H] COG0340 Biotin-(acetyl-CoA carboxylase) ligase	gene	gene2849	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2863
CH54_2864	CH54_2864	coaA	coaA	3106498	3107448	-	pantothenate kinase	panK_bact: pantothenate kinase~[H] COG1072 Panthothenate kinase	gene	gene2850	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2864
CH54_2865	CH54_2865		CH54_2865	3107658	3108209	-	acetyltransferase domain protein	[KR] COG0454 Histone acetyltransferase HPA2 and related acetyltransferases	gene	gene2851	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2865
CH54_2866	CH54_2866		CH54_2866	3108346	3108591	-	hypothetical protein		gene	gene2852	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2866
CH54_2867	CH54_2867		CH54_2867	3108626	3108701	+	tRNA-Thr		tRNA	gene2853	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2867
CH54_2869	CH54_2869		CH54_2869	3108720	3108804	+	tRNA-Tyr		tRNA	gene2854	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2869
CH54_287	CH54_287	sufS	sufS	304045	305280	+	cysteine desulfurase%2C SufS family protein	sufS: cysteine desulfurase%2C SufS family protein~[E] COG0520 Selenocysteine lyase	gene	gene285	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_287
CH54_2870	CH54_2870		CH54_2870	3108808	3108975	-	hypothetical protein	conserved hypothetical protein	gene	gene2855	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2870
CH54_2871	CH54_2871		CH54_2871	3109123	3109197	+	tRNA-Gly		tRNA	gene2856	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2871
CH54_2872	CH54_2872		CH54_2872	3109204	3109279	+	tRNA-Thr		tRNA	gene2857	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2872
CH54_2873	CH54_2873	tuf	tuf	3109388	3110572	+	translation elongation factor Tu	EF-Tu: translation elongation factor Tu~[J] COG0050 GTPases - translation elongation factors	gene	gene2858	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2873
CH54_2874	CH54_2874	secE	secE	3110812	3111195	+	preprotein translocase%2C SecE subunit	secE_bact: preprotein translocase%2C SecE subunit~[U] COG0690 Preprotein translocase subunit SecE	gene	gene2859	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2874
CH54_2875	CH54_2875	nusG	nusG	3111197	3111742	+	Transcription antiterminator	nusG: transcription termination/antitermination factor NusG~[K] COG0250 Transcription antiterminator	gene	gene2860	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2875
CH54_2876	CH54_2876	rplK	rplK	3111936	3112364	+	ribosomal protein L11	L11_bact: ribosomal protein L11~[J] COG0080 Ribosomal protein L11	gene	gene2861	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2876
CH54_2877	CH54_2877	rplA	rplA	3112368	3113072	+	ribosomal protein L1	rplA_bact: ribosomal protein L1~[J] COG0081 Ribosomal protein L1	gene	gene2862	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2877
CH54_2878	CH54_2878		CH54_2878	3113448	3113951	+	ribosomal L10 family protein	[J] COG0244 Ribosomal protein L10	gene	gene2863	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2878
CH54_2879	CH54_2879	rplL	rplL	3114021	3114389	+	ribosomal protein L7/L12	L12: ribosomal protein L7/L12~[J] COG0222 Ribosomal protein L7/L12	gene	gene2864	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2879
CH54_288	CH54_288		CH54_288	305435	305857	+	fe-S metabolism associated domain protein	[R] COG2166 SufE protein probably involved in Fe-S center assembly	gene	gene286	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_288
CH54_2880	CH54_2880	rpoB	rpoB	3114735	3118763	+	DNA-directed RNA polymerase%2C beta subunit	rpoB: DNA-directed RNA polymerase%2C beta subunit~[K] COG0085 DNA-directed RNA polymerase%2C beta subunit/140 kD subunit	gene	gene2865	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2880
CH54_2881	CH54_2881	rpoC	rpoC	3118884	3123104	+	DNA-directed RNA polymerase%2C beta' subunit	rpoC_TIGR: DNA-directed RNA polymerase%2C beta' subunit~[K] COG0086 DNA-directed RNA polymerase%2C beta' subunit/160 kD subunit	gene	gene2866	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2881
CH54_2882	CH54_2882	thiH	thiH	3123187	3124317	-	thiazole biosynthesis protein ThiH	thiH: thiazole biosynthesis protein ThiH~[HR] COG1060 Thiamine biosynthesis enzyme ThiH and related uncharacterized enzymes	gene	gene2867	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2882
CH54_2883	CH54_2883		CH54_2883	3124310	3125098	-	thiazole biosynthesis ThiG family protein	[H] COG2022 Uncharacterized enzyme of thiazole biosynthesis	gene	gene2868	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2883
CH54_2884	CH54_2884	thiS	thiS	3125100	3125315	-	thiamine biosynthesis protein ThiS	thiS: thiamine biosynthesis protein ThiS~[H] COG2104 Sulfur transfer protein involved in thiamine biosynthesis	gene	gene2869	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2884
CH54_2885	CH54_2885		CH54_2885	3125312	3126094	-	thiF family protein	[H] COG0476 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2	gene	gene2870	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2885
CH54_2886	CH54_2886	thiE	thiE	3126078	3126758	-	thiamine-phosphate diphosphorylase	thiE: thiamine-phosphate diphosphorylase~[H] COG0352 Thiamine monophosphate synthase	gene	gene2871	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2886
CH54_2887	CH54_2887	thiC	thiC	3126745	3128775	-	phosphomethylpyrimidine synthase	thiC: phosphomethylpyrimidine synthase~[H] COG0422 Thiamine biosynthesis protein ThiC	gene	gene2872	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2887
CH54_2888	CH54_2888		CH54_2888	3129205	3129708	-	regulator of RNA polymerase sigma(70) subunit%2C Rsd/AlgQ family protein	[K] COG3160 Regulator of sigma D	gene	gene2873	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2888
CH54_2889	CH54_2889		CH54_2889	3129807	3130592	+	NADH pyrophosphatase-like rudimentary NUDIX domain protein	[L] COG2816 NTP pyrophosphohydrolases containing a Zn-finger%2C probably nucleic-acid-binding	gene	gene2874	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2889
CH54_289	CH54_289		CH54_289	306302	307369	+	L%2CD-transpeptidase catalytic domain protein	[S] COG1376 Uncharacterized protein conserved in bacteria	gene	gene287	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_289
CH54_2890	CH54_2890	hemE	hemE	3130674	3131741	+	uroporphyrinogen decarboxylase	hemE: uroporphyrinogen decarboxylase~[H] COG0407 Uroporphyrinogen-III decarboxylase	gene	gene2875	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2890
CH54_2891	CH54_2891		CH54_2891	3131766	3132470	+	endonuclease V family protein	[L] COG1515 Deoxyinosine 3'endonuclease (endonuclease V)	gene	gene2876	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2891
CH54_2892	CH54_2892		CH54_2892	3132516	3133106	+	hypothetical protein	conserved hypothetical protein~[S] COG3068 Uncharacterized protein conserved in bacteria	gene	gene2877	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2892
CH54_2893	CH54_2893		CH54_2893	3133295	3133570	+	bacterial DNA-binding family protein	[L] COG0776 Bacterial nucleoid DNA-binding protein	gene	gene2878	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2893
CH54_2894	CH54_2894		CH54_2894	3133623	3134276	+	hypothetical protein	conserved hypothetical protein	gene	gene2879	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2894
CH54_2895	CH54_2895	purD	purD	3134387	3135676	-	phosphoribosylamine--glycine ligase	purD: phosphoribosylamine--glycine ligase~[F] COG0151 Phosphoribosylamine-glycine ligase	gene	gene2880	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2895
CH54_2896	CH54_2896	purH	purH	3135703	3137292	-	phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	purH: phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase~[F] COG0138 AICAR transformylase/IMP cyclohydrolase PurH (only IMP cyclohydrolase domain in Aful)	gene	gene2881	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2896
CH54_2897	CH54_2897		CH54_2897	3137854	3137994	+	hypothetical protein	conserved hypothetical protein	gene	gene2882	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2897
CH54_2898	CH54_2898		CH54_2898	3138101	3139631	+	16S ribosomal RNA		rRNA	gene2883	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2898
CH54_2899	CH54_2899		CH54_2899	3139772	3139847	+	tRNA-Glu		tRNA	gene2884	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2899
CH54_29	CH54_29	cas3f	cas3f	27991	31263	+	CRISPR-associated helicase Cas3%2C subtype I-F/YPEST	cas3_yersinia: CRISPR-associated helicase Cas3%2C subtype I-F/YPEST~[R] COG1203 Predicted helicases	gene	gene28	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_29
CH54_290	CH54_290		CH54_290	307586	307822	-	lipoleucine-zipper family protein	[M] COG4238 Murein lipoprotein	gene	gene288	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_290
CH54_2900	CH54_2900		CH54_2900	3140075	3143066	+	23S ribosomal RNA		rRNA	gene2885	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2900
CH54_2901	CH54_2901		CH54_2901	3143184	3143298	+	5S ribosomal RNA		rRNA	gene2886	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2901
CH54_2902	CH54_2902		CH54_2902	3143312	3143387	+	tRNA-Thr		tRNA	gene2887	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2902
CH54_2903	CH54_2903		CH54_2903	3143431	3143545	+	5S ribosomal RNA		rRNA	gene2888	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2903
CH54_2904	CH54_2904	metA	metA	3143927	3144856	+	homoserine O-succinyltransferase	metA: homoserine O-succinyltransferase~[E] COG1897 Homoserine trans-succinylase	gene	gene2889	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2904
CH54_2905	CH54_2905	aceB	aceB	3145262	3146860	+	malate synthase A	malate_syn_A: malate synthase A~[C] COG2225 Malate synthase	gene	gene2890	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2905
CH54_2906	CH54_2906	aceA	aceA	3146893	3148200	+	isocitrate lyase	isocit_lyase: isocitrate lyase~[C] COG2224 Isocitrate lyase	gene	gene2891	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2906
CH54_2907	CH54_2907		CH54_2907	3148278	3150005	+	isocitrate dehydrogenase kinase/phosphatase family protein	[T] COG4579 Isocitrate dehydrogenase kinase/phosphatase	gene	gene2892	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2907
CH54_2908	CH54_2908		CH54_2908	3150123	3150962	-	iclR helix-turn-helix domain protein	[K] COG1414 Transcriptional regulator	gene	gene2893	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2908
CH54_2909	CH54_2909	metH	metH	3151206	3154931	+	methionine synthase	metH: methionine synthase~[E] COG1410 Methionine synthase I%2C cobalamin-binding domain	gene	gene2894	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2909
CH54_291	CH54_291	pyk	pyk	308140	309552	-	pyruvate kinase	pyruv_kin: pyruvate kinase~[G] COG0469 Pyruvate kinase	gene	gene289	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_291
CH54_2910	CH54_2910		CH54_2910	3155025	3159884	-	hypothetical protein	adhes_NPXG: filamentous hemagglutinin family N-terminal domain protein~[U] COG3210 Large exoproteins involved in heme utilization or adhesion	gene	gene2895	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2910
CH54_2911	CH54_2911		CH54_2911	3159950	3161620	-	hemolysin secretion/activation ShlB/FhaC/HecB family protein	[U] COG2831 Hemolysin activation/secretion protein	gene	gene2896	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2911
CH54_2912	CH54_2912		CH54_2912	3161937	3162860	-	sodium Bile acid symporter family protein	[R] COG0385 Predicted Na+-dependent transporter	gene	gene2897	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2912
CH54_2913	CH54_2913		CH54_2913	3162944	3164359	-	aspartate kinase%2C monofunctional class	asp_kin_monofn: aspartate kinase%2C monofunctional class~[E] COG0527 Aspartokinases	gene	gene2898	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2913
CH54_2914	CH54_2914		CH54_2914	3164540	3164710	+	hypothetical protein		gene	gene2899	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2914
CH54_2915	CH54_2915		CH54_2915	3164729	3166375	+	phosphoglucose isomerase family protein	[G] COG0166 Glucose-6-phosphate isomerase	gene	gene2900	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2915
CH54_2916	CH54_2916		CH54_2916	3166479	3166886	+	phosphate-starvation-inducible E family protein	[S] COG3223 Predicted membrane protein	gene	gene2901	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2916
CH54_2917	CH54_2917		CH54_2917	3166976	3167866	-	binding--dependent transport system inner membrane component family protein	[G] COG3833 ABC-type maltose transport systems%2C permease component	gene	gene2902	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2917
CH54_2918	CH54_2918		CH54_2918	3167880	3169526	-	binding--dependent transport system inner membrane component family protein	[G] COG1175 ABC-type sugar transport systems%2C permease components	gene	gene2903	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2918
CH54_2919	CH54_2919		CH54_2919	3169737	3170948	-	bacterial extracellular solute-binding family protein	[G] COG2182 Maltose-binding periplasmic proteins/domains	gene	gene2904	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2919
CH54_292	CH54_292		CH54_292	310068	310144	-	tRNA-Val		tRNA	gene290	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_292
CH54_2920	CH54_2920		CH54_2920	3171627	3172742	+	ABC transporter family protein	[G] COG3839 ABC-type sugar transport systems%2C ATPase components	gene	gene2905	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2920
CH54_2921	CH54_2921		CH54_2921	3172814	3174085	+	lamB porin family protein	[G] COG4580 Maltoporin (phage lambda and maltose receptor)	gene	gene2906	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2921
CH54_2922	CH54_2922		CH54_2922	3174249	3175160	+	maltose operon periplasmic family protein		gene	gene2907	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2922
CH54_2923	CH54_2923		CH54_2923	3175492	3178491	+	hypothetical protein		gene	gene2908	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2923
CH54_2924	CH54_2924		CH54_2924	3178625	3179131	+	chorismate lyase family protein	[H] COG3161 4-hydroxybenzoate synthetase (chorismate lyase)	gene	gene2909	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2924
CH54_2925	CH54_2925	ubiA	ubiA	3179146	3180030	+	4-hydroxybenzoate polyprenyl transferase	ubiA_proteo: 4-hydroxybenzoate polyprenyl transferase~[H] COG0382 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases	gene	gene2910	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2925
CH54_2926	CH54_2926	plsB	plsB	3180118	3182586	-	glycerol-3-phosphate O-acyltransferase	plsB: glycerol-3-phosphate O-acyltransferase~[I] COG2937 Glycerol-3-phosphate O-acyltransferase	gene	gene2911	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2926
CH54_2927	CH54_2927		CH54_2927	3182713	3183081	+	prokaryotic diacylglycerol kinase family protein	[M] COG0818 Diacylglycerol kinase	gene	gene2912	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2927
CH54_2928	CH54_2928	lexA	lexA	3183198	3183806	+	repressor LexA	lexA: repressor LexA~[KT] COG1974 SOS-response transcriptional repressors (RecA-mediated autopeptidases)	gene	gene2913	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2928
CH54_2929	CH54_2929		CH54_2929	3184165	3184374	+	csbD-like family protein	[S] COG3237 Uncharacterized protein conserved in bacteria	gene	gene2914	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2929
CH54_293	CH54_293		CH54_293	310187	310263	-	tRNA-Val		tRNA	gene291	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_293
CH54_2930	CH54_2930		CH54_2930	3184686	3185198	-	ferric uptake regulator family protein	[P] COG0735 Fe2+/Zn2+ uptake regulation proteins	gene	gene2915	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2930
CH54_2931	CH54_2931	dusA	dusA	3185469	3186500	+	tRNA dihydrouridine synthase A family protein	yjbN: tRNA dihydrouridine synthase A family protein~[J] COG0042 tRNA-dihydrouridine synthase	gene	gene2916	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2931
CH54_2932	CH54_2932	pspG	pspG	3186718	3186936	+	phage shock protein G	phageshock_pspG: phage shock protein G	gene	gene2917	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2932
CH54_2933	CH54_2933		CH54_2933	3187322	3187648	-	hypothetical protein	conserved hypothetical protein	gene	gene2918	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2933
CH54_2934	CH54_2934		CH54_2934	3187831	3188814	-	zinc-binding dehydrogenase family protein	[CR] COG0604 NADPH:quinone reductase and related Zn-dependent oxidoreductases	gene	gene2919	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2934
CH54_2935	CH54_2935	dnaB	dnaB	3189001	3190407	+	replicative DNA helicase	dnaB: replicative DNA helicase~[L] COG0305 Replicative DNA helicase	gene	gene2920	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2935
CH54_2936	CH54_2936	alr	alr	3190561	3191640	+	alanine racemase	alr: alanine racemase~[M] COG0787 Alanine racemase	gene	gene2921	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2936
CH54_2937	CH54_2937		CH54_2937	3191707	3192900	+	aminotransferase class I and II family protein	[E] COG1448 Aspartate/tyrosine/aromatic aminotransferase	gene	gene2922	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2937
CH54_2938	CH54_2938		CH54_2938	3193216	3193569	+	yjbR family protein	[S] COG2315 Uncharacterized protein conserved in bacteria	gene	gene2923	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2938
CH54_2939	CH54_2939	uvrA	uvrA	3193629	3196460	-	excinuclease ABC subunit A	uvra: excinuclease ABC subunit A~[L] COG0178 Excinuclease ATPase subunit	gene	gene2924	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2939
CH54_294	CH54_294		CH54_294	310302	310378	-	tRNA-Val		tRNA	gene292	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_294
CH54_2940	CH54_2940	ssb	ssb	3196873	3197421	+	single-stranded DNA-binding family protein	ssb: single-stranded DNA-binding family protein~[L] COG0629 Single-stranded DNA-binding protein	gene	gene2925	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2940
CH54_2941	CH54_2941		CH54_2941	3197486	3198040	-		hypothetical protein	pseudogene	gene2926	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2941
CH54_2943	CH54_2943		CH54_2943	3198042	3198356	-	helix-turn-helix family protein	[K] COG1396 Predicted transcriptional regulators	gene	gene2927	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2943
CH54_2944	CH54_2944		CH54_2944	3198620	3199291	+	hypothetical protein	glutathione S-transferase%2C N-terminal domain protein~[O] COG0625 Glutathione S-transferase	gene	gene2928	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2944
CH54_2945	CH54_2945		CH54_2945	3199711	3201078	+	permease family protein	[R] COG2252 Permeases	gene	gene2929	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2945
CH54_2946	CH54_2946		CH54_2946	3201290	3202939	+	Na+/H+ antiporter	a_cpa1: Na+/H+ antiporter~[P] COG0025 NhaP-type Na+/H+ and K+/H+ antiporters	gene	gene2930	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2946
CH54_2947	CH54_2947		CH54_2947	3202946	3203872	-	bacterial regulatory helix-turn-helix%2C lysR family protein	[K] COG0583 Transcriptional regulator	gene	gene2931	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2947
CH54_2948	CH54_2948		CH54_2948	3204013	3204438	+	lrgA family protein	[R] COG1380 Putative effector of murein hydrolase LrgA	gene	gene2932	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2948
CH54_2949	CH54_2949		CH54_2949	3204431	3205120	+	lrgB-like family protein	[M] COG1346 Putative effector of murein hydrolase	gene	gene2933	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2949
CH54_295	CH54_295		CH54_295	310748	312121	-	MATE efflux family protein	matE: MATE efflux family protein~[V] COG0534 Na+-driven multidrug efflux pump	gene	gene293	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_295
CH54_2950	CH54_2950		CH54_2950	3205374	3206918	+	phoPQ-activated pathogenicity-related family protein	[R] COG4287 PhoPQ-activated pathogenicity-related protein	gene	gene2934	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2950
CH54_2951	CH54_2951	lpxL	lpxL	3206984	3207904	-	lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase family protein	lipid_A_htrB: lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase family protein~[M] COG1560 Lauroyl/myristoyl acyltransferase	gene	gene2935	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2951
CH54_2952	CH54_2952		CH54_2952	3208209	3209621	-	transporter%2C divalent anion:Na+ symporter family protein	dass: transporter%2C divalent anion:Na+ symporter family protein~[P] COG0471 Di- and tricarboxylate transporters	gene	gene2936	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2952
CH54_2953	CH54_2953		CH54_2953	3210168	3211154	+	transposase DDE domain protein		gene	gene2937	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2953
CH54_2954	CH54_2954		CH54_2954	3211498	3211710	-	'Cold-shock' DNA-binding domain protein	[K] COG1278 Cold shock proteins	gene	gene2938	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2954
CH54_2955	CH54_2955		CH54_2955	3211975	3212187	-	'Cold-shock' DNA-binding domain protein	[K] COG1278 Cold shock proteins	gene	gene2939	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2955
CH54_2956	CH54_2956		CH54_2956	3212569	3213039	-	glycine zipper 2TM domain protein	[M] COG3133 Outer membrane lipoprotein	gene	gene2940	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2956
CH54_2957	CH54_2957		CH54_2957	3213246	3214817	+	diguanylate cyclase domain protein	GGDEF: diguanylate cyclase domain protein~[T] COG2199 FOG: GGDEF domain	gene	gene2941	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2957
CH54_2958	CH54_2958		CH54_2958	3214889	3215185	-	bacterial regulatory%2C Fis family protein	[KL] COG2901 Factor for inversion stimulation Fis%2C transcriptional activator	gene	gene2942	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2958
CH54_2959	CH54_2959		CH54_2959	3215210	3216175	-	TIM-barrel%2C nifR3 family protein	nifR3_yhdG: TIM-barrel%2C nifR3 family protein~[J] COG0042 tRNA-dihydrouridine synthase	gene	gene2943	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2959
CH54_296	CH54_296	ribE	ribE	312758	313414	+	riboflavin synthase%2C alpha subunit	ribE: riboflavin synthase%2C alpha subunit~[H] COG0307 Riboflavin synthase alpha chain	gene	gene294	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_296
CH54_2960	CH54_2960	prmA	prmA	3216617	3217498	-	ribosomal protein L11 methyltransferase	prmA: ribosomal protein L11 methyltransferase~[J] COG2264 Ribosomal protein L11 methylase	gene	gene2944	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2960
CH54_2961	CH54_2961	panF	panF	3217590	3219044	-	sodium/pantothenate symporter	panF: sodium/pantothenate symporter~[H] COG4145 Na+/panthothenate symporter	gene	gene2945	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2961
CH54_2962	CH54_2962		CH54_2962	3219034	3219276	-	hypothetical protein	conserved hypothetical protein~[S] COG3924 Predicted membrane protein	gene	gene2946	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2962
CH54_2963	CH54_2963	accC	accC	3219565	3220914	-	acetyl-CoA carboxylase%2C biotin carboxylase subunit	accC: acetyl-CoA carboxylase%2C biotin carboxylase subunit~[I] COG0439 Biotin carboxylase	gene	gene2947	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2963
CH54_2964	CH54_2964	accB	accB	3220926	3221390	-	acetyl-CoA carboxylase%2C biotin carboxyl carrier protein	BCCP: acetyl-CoA carboxylase%2C biotin carboxyl carrier protein~[I] COG0511 Biotin carboxyl carrier protein	gene	gene2948	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2964
CH54_2965	CH54_2965	aroQ	aroQ	3221422	3221874	-	3-dehydroquinate dehydratase%2C type II	aroQ: 3-dehydroquinate dehydratase%2C type II~[E] COG0757 3-dehydroquinate dehydratase II	gene	gene2949	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2965
CH54_2966	CH54_2966		CH54_2966	3222083	3222682	-	ferric reductase like transmembrane component family protein	[S] COG2717 Predicted membrane protein	gene	gene2950	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2966
CH54_2967	CH54_2967		CH54_2967	3222682	3223716	-	oxidoreductase molybdopterin binding domain protein	[R] COG2041 Sulfite oxidase and related enzymes	gene	gene2951	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2967
CH54_2968	CH54_2968		CH54_2968	3223875	3224852	-	quinone oxidoreductase%2C YhdH/YhfP family protein	oxido_YhdH: quinone oxidoreductase%2C YhdH/YhfP family protein~[CR] COG0604 NADPH:quinone reductase and related Zn-dependent oxidoreductases	gene	gene2952	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2968
CH54_2969	CH54_2969		CH54_2969	3225147	3227066	+	EAL domain protein	[T] COG2200 FOG: EAL domain	gene	gene2953	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2969
CH54_297	CH54_297		CH54_297	313470	314621	-	L-isoaspartate family protein	-L-isoaspartate family protein~[M] COG2230 Cyclopropane fatty acid synthase and related methyltransferases	gene	gene295	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_297
CH54_2970	CH54_2970		CH54_2970	3227401	3228444	+	cell shape determining%2C MreB/Mrl family protein	mreB: cell shape determining%2C MreB/Mrl family protein~[D] COG1077 Actin-like ATPase involved in cell morphogenesis	gene	gene2954	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2970
CH54_2971	CH54_2971	mreC	mreC	3228660	3229646	+	rod shape-determining protein MreC	mreC: rod shape-determining protein MreC~[M] COG1792 Cell shape-determining protein	gene	gene2955	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2971
CH54_2972	CH54_2972	mreD	mreD	3229643	3230131	+	rod shape-determining protein MreD	shape_MreD: rod shape-determining protein MreD~[M] COG2891 Cell shape-determining protein	gene	gene2956	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2972
CH54_2973	CH54_2973	maf	maf	3230145	3230738	+	septum formation protein Maf	maf: septum formation protein Maf~[D] COG0424 Nucleotide-binding protein implicated in inhibition of septum formation	gene	gene2957	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2973
CH54_2974	CH54_2974		CH54_2974	3230728	3232197	+	ribonuclease%2C Rne/Rng family domain protein	RNaseEG: ribonuclease%2C Rne/Rng family domain protein~[J] COG1530 Ribonucleases G and E	gene	gene2958	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2974
CH54_2975	CH54_2975		CH54_2975	3232274	3236149	+	hypothetical protein	conserved hypothetical protein~[S] COG3164 Predicted membrane protein	gene	gene2959	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2975
CH54_2976	CH54_2976		CH54_2976	3236146	3237003	+	carbon-nitrogen hydrolase family protein	[R] COG0388 Predicted amidohydrolase	gene	gene2960	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2976
CH54_2977	CH54_2977		CH54_2977	3237031	3238476	+	modulator of DNA gyrase family protein	[R] COG0312 Predicted Zn-dependent proteases and their inactivated homologs	gene	gene2961	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2977
CH54_2978	CH54_2978		CH54_2978	3238827	3239738	-	bacterial regulatory helix-turn-helix%2C lysR family protein	[K] COG0583 Transcriptional regulator	gene	gene2962	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2978
CH54_2979	CH54_2979		CH54_2979	3240053	3240256	+	hypothetical protein	conserved hypothetical protein	gene	gene2963	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2979
CH54_298	CH54_298		CH54_298	314940	316157	-	drug resistance transporter%2C Bcr/CflA subfamily protein	efflux_Bcr_CflA: drug resistance transporter%2C Bcr/CflA subfamily protein~[GEPR] COG0477 Permeases of the major facilitator superfamily	gene	gene296	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_298
CH54_2980	CH54_2980		CH54_2980	3240264	3241199	+	efflux transporter%2C RND family%2C MFP subunit	RND_mfp: efflux transporter%2C RND family%2C MFP subunit~[V] COG1566 Multidrug resistance efflux pump	gene	gene2964	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2980
CH54_2981	CH54_2981		CH54_2981	3241201	3243156	+	fusaric acid resistance family protein	[S] COG1289 Predicted membrane protein	gene	gene2965	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2981
CH54_2982	CH54_2982		CH54_2982	3243355	3244848	+	succinate-semialdehyde dehydrogenase family protein	SSADH: succinate-semialdehyde dehydrogenase family protein~[C] COG1012 NAD-dependent aldehyde dehydrogenases	gene	gene2966	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2982
CH54_2983	CH54_2983		CH54_2983	3244943	3245416	+	ribonuclease family protein		gene	gene2967	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2983
CH54_2984	CH54_2984		CH54_2984	3245421	3245687	+	barstar family protein	[K] COG2732 Barstar%2C RNAse (barnase) inhibitor	gene	gene2968	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2984
CH54_2985	CH54_2985		CH54_2985	3245720	3246265	-	hypothetical protein	conserved hypothetical protein~[S] COG3028 Uncharacterized protein conserved in bacteria	gene	gene2969	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2985
CH54_2986	CH54_2986		CH54_2986	3246434	3247774	+	modulator of DNA gyrase family protein	[R] COG0312 Predicted Zn-dependent proteases and their inactivated homologs	gene	gene2970	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2986
CH54_2987	CH54_2987		CH54_2987	3247956	3248342	+	cytochrome b562 family protein	[C] COG3783 Soluble cytochrome b562	gene	gene2971	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2987
CH54_2988	CH54_2988		CH54_2988	3248390	3248800	-	hypothetical protein	transcription elongation factor%2C GreA/GreB%2C C-term family protein~[K] COG0782 Transcription elongation factor	gene	gene2972	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2988
CH54_2989	CH54_2989		CH54_2989	3249210	3249554	+	PRD domain protein		gene	gene2973	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2989
CH54_299	CH54_299		CH54_299	316321	317247	+	bacterial regulatory helix-turn-helix%2C lysR family protein	[K] COG0583 Transcriptional regulator	gene	gene297	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_299
CH54_2990	CH54_2990		CH54_2990	3249578	3249943	+	glycine-rich SFCGS family protein		gene	gene2974	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2990
CH54_2991	CH54_2991		CH54_2991	3249943	3250239	+	hypothetical protein	conserved hypothetical protein	gene	gene2975	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2991
CH54_2992	CH54_2992		CH54_2992	3250258	3251034	+	hypothetical protein	conserved hypothetical protein	gene	gene2976	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2992
CH54_2993	CH54_2993		CH54_2993	3251056	3251706	+	hypothetical protein	conserved hypothetical protein	gene	gene2977	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2993
CH54_2994	CH54_2994		CH54_2994	3251790	3252959	+	amidohydrolase family protein	[R] COG3964 Predicted amidohydrolase	gene	gene2978	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2994
CH54_2995	CH54_2995		CH54_2995	3252943	3254055	+	beta-eliminating lyase family protein	[E] COG1921 Selenocysteine synthase [seryl-tRNASer selenium transferase]	gene	gene2979	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2995
CH54_2996	CH54_2996		CH54_2996	3254059	3254799	+	hypothetical protein	conserved hypothetical protein	gene	gene2980	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2996
CH54_2997	CH54_2997		CH54_2997	3254929	3256170	+	arylesterase family protein	[G] COG2706 3-carboxymuconate cyclase	gene	gene2981	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2997
CH54_2998	CH54_2998		CH54_2998	3256242	3258170	+	PRD domain protein	[K] COG3711 Transcriptional antiterminator	gene	gene2982	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2998
CH54_2999	CH54_2999	mgtA	mgtA	3258790	3261519	-	magnesium-translocating P-type ATPase	ATPase-IIIB_Mg: magnesium-translocating P-type ATPase~[P] COG0474 Cation transport ATPase	gene	gene2983	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_2999
CH54_3	CH54_3		CH54_3	2811	4238	+	integral membrane%2C PqiA family protein	pqiA_fam: integral membrane%2C PqiA family protein~[S] COG2995 Uncharacterized paraquat-inducible protein A	gene	gene2	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3
CH54_30	CH54_30		CH54_30	31488	31652	+	hypothetical protein		gene	gene29	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_30
CH54_300	CH54_300		CH54_300	317297	318322	-	bacterial regulatory s%2C lacI family protein	[K] COG1609 Transcriptional regulators	gene	gene298	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_300
CH54_3000	CH54_3000	treR	treR	3262068	3263015	+	trehalose operon repressor	trehalos_R_Ecol: trehalose operon repressor~[K] COG1609 Transcriptional regulators	gene	gene2984	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3000
CH54_3001	CH54_3001	treP	treP	3263329	3264744	+	PTS system%2C trehalose-specific IIBC component	PTS-IIBC-Tre: PTS system%2C trehalose-specific IIBC component~[G] COG1263 Phosphotransferase system IIC components%2C glucose/maltose/N-acetylglucosamine-specific	gene	gene2985	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3001
CH54_3002	CH54_3002	treC	treC	3264860	3266524	+	alpha%2Calpha-phosphotrehalase	trehalose_treC: alpha%2Calpha-phosphotrehalase~[G] COG0366 Glycosidases	gene	gene2986	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3002
CH54_3003	CH54_3003		CH54_3003	3266688	3267074	-	reactive intermediate/imine deaminase family protein	[J] COG0251 Putative translation initiation inhibitor%2C yjgF family	gene	gene2987	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3003
CH54_3004	CH54_3004	pyrI	pyrI	3267157	3267621	-	aspartate carbamoyltransferase%2C regulatory subunit	ATCase_reg: aspartate carbamoyltransferase%2C regulatory subunit~[F] COG1781 Aspartate carbamoyltransferase%2C regulatory subunit	gene	gene2988	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3004
CH54_3005	CH54_3005	pyrB	pyrB	3267634	3268569	-	aspartate carbamoyltransferase	asp_carb_tr: aspartate carbamoyltransferase~[F] COG0540 Aspartate carbamoyltransferase%2C catalytic chain	gene	gene2989	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3005
CH54_3006	CH54_3006		CH54_3006	3268800	3268928	-	hypothetical protein	conserved hypothetical protein	gene	gene2990	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3006
CH54_3007	CH54_3007		CH54_3007	3269492	3269764	-	phosphocarrier%2C HPr family protein	PTS_HPr_: phosphocarrier%2C HPr family protein~[G] COG1925 Phosphotransferase system%2C HPr-related proteins	gene	gene2991	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3007
CH54_3008	CH54_3008		CH54_3008	3269764	3270615	-	P-loop ATPase family protein	[R] COG1660 Predicted P-loop-containing kinase	gene	gene2992	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3008
CH54_3009	CH54_3009	ptsN	ptsN	3270698	3271180	-	PTS IIA-like nitrogen-regulatory protein PtsN	nitro_reg_IIA: PTS IIA-like nitrogen-regulatory protein PtsN~[GT] COG1762 Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type)	gene	gene2993	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3009
CH54_301	CH54_301		CH54_301	318678	318767	+	putative membrane protein		gene	gene299	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_301
CH54_3010	CH54_3010	raiA	raiA	3271354	3271641	-	ribosomal subunit interface protein	yfiA: ribosomal subunit interface protein~[J] COG1544 Ribosome-associated protein Y (PSrp-1)	gene	gene2994	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3010
CH54_3011	CH54_3011	rpoN	rpoN	3271665	3273098	-	RNA polymerase sigma-54 factor	rpoN_sigma: RNA polymerase sigma-54 factor~[K] COG1508 DNA-directed RNA polymerase specialized sigma subunit%2C sigma54 homolog	gene	gene2995	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3011
CH54_3012	CH54_3012	lptB	lptB	3273161	3273886	-	LPS export ABC transporter ATP-binding protein	LPS_export_lptB: LPS export ABC transporter ATP-binding protein~[R] COG1137 ABC-type (unclassified) transport system%2C ATPase component	gene	gene2996	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3012
CH54_3013	CH54_3013	lptA	lptA	3273893	3274438	-	lipopolysaccharide transport periplasmic protein LptA	outer_YhbN_LptA: lipopolysaccharide transport periplasmic protein LptA~[S] COG1934 Uncharacterized protein conserved in bacteria	gene	gene2997	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3013
CH54_3014	CH54_3014	lptC	lptC	3274422	3274985	-	LPS export ABC transporter periplasmic protein LptC	lptC_YrbK: LPS export ABC transporter periplasmic protein LptC~[S] COG3117 Uncharacterized protein conserved in bacteria	gene	gene2998	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3014
CH54_3015	CH54_3015		CH54_3015	3274982	3275545	-	3-deoxy-D-manno-octulosonate 8-phosphate phosphatase%2C YrbI family protein	yrbI-phosphatas: 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase%2C YrbI family protein~[R] COG1778 Low specificity phosphatase (HAD superfamily)	gene	gene2999	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3015
CH54_3016	CH54_3016		CH54_3016	3275559	3276545	-	sugar isomerase%2C KpsF/GutQ family protein	kpsF: sugar isomerase%2C KpsF/GutQ family protein~[M] COG0794 Predicted sugar phosphate isomerase involved in capsule formation	gene	gene3000	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3016
CH54_3017	CH54_3017		CH54_3017	3276582	3277556	-	sodium/calcium exchanger family protein	[P] COG0530 Ca2+/Na+ antiporter	gene	gene3001	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3017
CH54_3018	CH54_3018		CH54_3018	3277957	3278766	+	ABC transporter family protein	[Q] COG1127 ABC-type transport system involved in resistance to organic solvents%2C ATPase component	gene	gene3002	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3018
CH54_3019	CH54_3019		CH54_3019	3278781	3279563	+	ABC transport permease subunit	[Q] COG0767 ABC-type transport system involved in resistance to organic solvents%2C permease component	gene	gene3003	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3019
CH54_302	CH54_302		CH54_302	318870	319448	-	iron/manganese superoxide dismutase%2C alpha-hairpin domain protein	[P] COG0605 Superoxide dismutase	gene	gene300	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_302
CH54_3020	CH54_3020	mlaD	mlaD	3279568	3280122	+	outer membrane lipid asymmetry maintenance protein MlaD	OM_asym_MlaD: outer membrane lipid asymmetry maintenance protein MlaD~[Q] COG1463 ABC-type transport system involved in resistance to organic solvents%2C periplasmic component	gene	gene3004	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3020
CH54_3021	CH54_3021		CH54_3021	3280134	3280757	+	toluene tolerance%2C Ttg2 family protein	[Q] COG2854 ABC-type transport system involved in resistance to organic solvents%2C auxiliary component	gene	gene3005	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3021
CH54_3022	CH54_3022		CH54_3022	3280763	3281086	+	STAS domain protein	[R] COG3113 Predicted NTP binding protein (contains STAS domain)	gene	gene3006	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3022
CH54_3023	CH54_3023		CH54_3023	3281261	3281515	+	bolA-like family protein	[K] COG5007 Predicted transcriptional regulator%2C BolA superfamily	gene	gene3007	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3023
CH54_3024	CH54_3024	murA	murA	3281653	3282918	+	UDP-N-acetylglucosamine 1-carboxyvinyltransferase	murA: UDP-N-acetylglucosamine 1-carboxyvinyltransferase~[M] COG0766 UDP-N-acetylglucosamine enolpyruvyl transferase	gene	gene3008	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3024
CH54_3025	CH54_3025	degS	degS	3283043	3284179	-	periplasmic serine peptidase DegS	protease_degS: periplasmic serine peptidase DegS~[O] COG0265 Trypsin-like serine proteases%2C typically periplasmic%2C contain C-terminal PDZ domain	gene	gene3009	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3025
CH54_3026	CH54_3026		CH54_3026	3284226	3285599	-	peptidase Do family protein	degP_htrA_DO: peptidase Do family protein~[O] COG0265 Trypsin-like serine proteases%2C typically periplasmic%2C contain C-terminal PDZ domain	gene	gene3010	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3026
CH54_3027	CH54_3027		CH54_3027	3286058	3286462	-	hypothetical protein	conserved hypothetical protein~[S] COG3105 Uncharacterized protein conserved in bacteria	gene	gene3011	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3027
CH54_3028	CH54_3028		CH54_3028	3286702	3287829	+	AFG1-like ATPase family protein	[R] COG1485 Predicted ATPase	gene	gene3012	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3028
CH54_3029	CH54_3029	rplM	rplM	3288162	3288590	+	ribosomal protein L13	rplM_bact: ribosomal protein L13~[J] COG0102 Ribosomal protein L13	gene	gene3013	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3029
CH54_303	CH54_303		CH54_303	319746	320666	-	nlpC/P60 family protein	[M] COG0791 Cell wall-associated hydrolases (invasion-associated proteins)	gene	gene301	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_303
CH54_3030	CH54_3030		CH54_3030	3288605	3288997	+	ribosomal S9/S16 family protein	[J] COG0103 Ribosomal protein S9	gene	gene3014	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3030
CH54_3031	CH54_3031		CH54_3031	3289393	3290034	+	hypothetical protein	glutathione S-transferase%2C N-terminal domain protein~[O] COG0625 Glutathione S-transferase	gene	gene3015	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3031
CH54_3032	CH54_3032		CH54_3032	3290039	3290551	+	stringent starvation B family protein	[R] COG2969 Stringent starvation protein B	gene	gene3016	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3032
CH54_3033	CH54_3033		CH54_3033	3290639	3291124	-	hypothetical protein		gene	gene3017	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3033
CH54_3034	CH54_3034		CH54_3034	3291367	3292785	-	glutamate synthase%2C small subunit domain protein	gltD_gamma_fam: glutamate synthase%2C small subunit domain protein~[ER] COG0493 NADPH-dependent glutamate synthase beta chain and related oxidoreductases	gene	gene3018	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3034
CH54_3035	CH54_3035		CH54_3035	3292795	3297255	-	glutamine amidotransferases class-II family protein	[E] COG0070 Glutamate synthase domain 3	gene	gene3019	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3035
CH54_3036	CH54_3036		CH54_3036	3297953	3298855	+	radical SAM superfamily protein	[R] COG1242 Predicted Fe-S oxidoreductase	gene	gene3020	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3036
CH54_3037	CH54_3037		CH54_3037	3299171	3301507	+	sensory box protein	[T] COG0642 Signal transduction histidine kinase	gene	gene3021	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3037
CH54_3038	CH54_3038		CH54_3038	3301749	3302402	+	DJ-1/PfpI family protein	[Q] COG3155 Uncharacterized protein involved in an early stage of isoprenoid biosynthesis	gene	gene3022	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3038
CH54_3039	CH54_3039	mtgA	mtgA	3302399	3303124	+	monofunctional biosynthetic peptidoglycan transglycosylase	mono_pep_trsgly: monofunctional biosynthetic peptidoglycan transglycosylase~[M] COG0744 Membrane carboxypeptidase (penicillin-binding protein)	gene	gene3023	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3039
CH54_304	CH54_304	grxD	grxD	321100	321450	+	monothiol glutaredoxin%2C Grx4 family	[O] COG0278 Glutaredoxin-related protein	gene	gene302	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_304
CH54_3040	CH54_3040		CH54_3040	3303185	3303760	-	BON domain protein	[R] COG2823 Predicted periplasmic or secreted lipoprotein	gene	gene3024	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3040
CH54_3041	CH54_3041		CH54_3041	3303771	3304361	-	SIS domain protein	[G] COG0279 Phosphoheptose isomerase	gene	gene3025	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3041
CH54_3042	CH54_3042		CH54_3042	3304542	3304895	-	hypothetical protein	conserved hypothetical protein~[L] COG0792 Predicted endonuclease distantly related to archaeal Holliday junction resolvase	gene	gene3026	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3042
CH54_3043	CH54_3043		CH54_3043	3305450	3307420	-	lppC lipofamily protein	[R] COG3107 Putative lipoprotein	gene	gene3027	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3043
CH54_3044	CH54_3044	rsmI	rsmI	3307483	3308382	+	16S rRNA (cytidine(1402)-2'-O)-methyltransferase	[R] COG0313 Predicted methyltransferases	gene	gene3028	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3044
CH54_3045	CH54_3045		CH54_3045	3308841	3310490	+	phage integrase family protein	[L] COG0582 Integrase	gene	gene3029	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3045
CH54_3046	CH54_3046		CH54_3046	3310501	3310698	-	hypothetical protein		gene	gene3030	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3046
CH54_3047	CH54_3047		CH54_3047	3310797	3311210	-	hypothetical protein		gene	gene3031	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3047
CH54_3048	CH54_3048		CH54_3048	3311259	3311501	-	hypothetical protein	conserved hypothetical protein	gene	gene3032	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3048
CH54_3049	CH54_3049		CH54_3049	3311692	3311811	+	hypothetical protein		gene	gene3033	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3049
CH54_305	CH54_305	rnt	rnt	321536	322219	-	ribonuclease T	RNaseT: ribonuclease T~[L] COG0847 DNA polymerase III%2C epsilon subunit and related 3'-5' exonucleases	gene	gene303	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_305
CH54_3050	CH54_3050		CH54_3050	3312100	3312771	+	hypothetical protein	conserved hypothetical protein	gene	gene3034	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3050
CH54_3051	CH54_3051		CH54_3051	3313003	3313572	-	hypothetical protein	resolvase%2C N terminal domain protein~[L] COG1961 Site-specific recombinases%2C DNA invertase Pin homologs	gene	gene3035	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3051
CH54_3052	CH54_3052		CH54_3052	3314357	3314890	+	hypothetical protein		gene	gene3036	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3052
CH54_3053	CH54_3053	dcm	dcm	3315228	3316307	-	DNA (cytosine-5-)-methyltransferase family protein	dcm: DNA (cytosine-5-)-methyltransferase family protein~[L] COG0270 Site-specific DNA methylase	gene	gene3037	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3053
CH54_3054	CH54_3054		CH54_3054	3316386	3316952	-	hypothetical protein		gene	gene3038	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3054
CH54_3055	CH54_3055		CH54_3055	3316945	3317178	-	helix-turn-helix family protein	[K] COG1396 Predicted transcriptional regulators	gene	gene3039	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3055
CH54_3056	CH54_3056		CH54_3056	3317599	3318246	-	pentapeptide repeats family protein	[S] COG1357 Uncharacterized low-complexity proteins	gene	gene3040	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3056
CH54_3057	CH54_3057		CH54_3057	3318282	3319445	-	ABC-2 transporter family protein	[V] COG0842 ABC-type multidrug transport system%2C permease component	gene	gene3041	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3057
CH54_3058	CH54_3058		CH54_3058	3319429	3320457	-	hlyD secretion family protein	[M] COG0845 Membrane-fusion protein	gene	gene3042	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3058
CH54_3059	CH54_3059		CH54_3059	3320656	3321159	-	marR family protein	[K] COG1846 Transcriptional regulators	gene	gene3043	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3059
CH54_306	CH54_306	gloA	gloA	322297	322707	-	lactoylglutathione lyase	glyox_I: lactoylglutathione lyase~[E] COG0346 Lactoylglutathione lyase and related lyases	gene	gene304	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_306
CH54_3060	CH54_3060		CH54_3060	3321279	3322172	-	bacterial regulatory helix-turn-helix%2C lysR family protein	[K] COG0583 Transcriptional regulator	gene	gene3044	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3060
CH54_3061	CH54_3061		CH54_3061	3322356	3323351	+	aldo/keto reductase family protein	[C] COG0667 Predicted oxidoreductases (related to aryl-alcohol dehydrogenases)	gene	gene3045	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3061
CH54_3062	CH54_3062		CH54_3062	3323457	3323852	+	araC-like ligand binding domain protein	[S] COG1917 Uncharacterized conserved protein%2C contains double-stranded beta-helix domain	gene	gene3046	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3062
CH54_3063	CH54_3063		CH54_3063	3323866	3324606	+	short chain dehydrogenase family protein	[R] COG4221 Short-chain alcohol dehydrogenase of unknown specificity	gene	gene3047	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3063
CH54_3064	CH54_3064		CH54_3064	3324655	3325710	+	zinc-binding dehydrogenase family protein	[R] COG1064 Zn-dependent alcohol dehydrogenases	gene	gene3048	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3064
CH54_3065	CH54_3065		CH54_3065	3325805	3326509	-	pirin family protein	[R] COG1741 Pirin-related protein	gene	gene3049	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3065
CH54_3066	CH54_3066		CH54_3066	3327070	3327966	+	bacterial regulatory helix-turn-helix%2C lysR family protein	[K] COG0583 Transcriptional regulator	gene	gene3050	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3066
CH54_3067	CH54_3067		CH54_3067	3328016	3329002	-	hypothetical protein	glutathione S-transferase%2C N-terminal domain protein~[O] COG0435 Predicted glutathione S-transferase	gene	gene3051	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3067
CH54_3068	CH54_3068		CH54_3068	3329087	3329482	-	doxX family protein	[S] COG2259 Predicted membrane protein	gene	gene3052	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3068
CH54_3069	CH54_3069		CH54_3069	3329777	3330061	-	yqjK-like family protein		gene	gene3053	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3069
CH54_307	CH54_307		CH54_307	322881	323978	-	flavin oxidoreductase / NADH oxidase family protein	NADH:flavin oxidoreductase / NADH oxidase family protein~[C] COG1902 NADH:flavin oxidoreductases%2C Old Yellow Enzyme family	gene	gene305	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_307
CH54_3070	CH54_3070		CH54_3070	3330058	3330453	-	hypothetical protein	conserved hypothetical protein~[S] COG5393 Predicted membrane protein	gene	gene3054	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3070
CH54_3071	CH54_3071		CH54_3071	3330456	3330761	-	hypothetical protein	conserved hypothetical protein~[S] COG4575 Uncharacterized conserved protein	gene	gene3055	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3071
CH54_3072	CH54_3072		CH54_3072	3330875	3331276	-	hypothetical protein	conserved hypothetical protein	gene	gene3056	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3072
CH54_3073	CH54_3073		CH54_3073	3331461	3331850	-	hypothetical protein	secD export N-terminal TM region family protein	gene	gene3057	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3073
CH54_3074	CH54_3074		CH54_3074	3331847	3332539	-	hypothetical protein	conserved hypothetical protein~[S] COG0586 Uncharacterized membrane-associated protein	gene	gene3058	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3074
CH54_3075	CH54_3075		CH54_3075	3332733	3333368	-	putative lipoprotein		gene	gene3059	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3075
CH54_3076	CH54_3076		CH54_3076	3333524	3334339	-	bacterial regulatory s%2C gntR family protein	[K] COG2186 Transcriptional regulators	gene	gene3060	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3076
CH54_3077	CH54_3077		CH54_3077	3334581	3335885	-	major Facilitator Superfamily protein	[GEPR] COG0477 Permeases of the major facilitator superfamily	gene	gene3061	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3077
CH54_3078	CH54_3078		CH54_3078	3336422	3337831	+	glucuronate isomerase family protein	[G] COG1904 Glucuronate isomerase	gene	gene3062	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3078
CH54_3079	CH54_3079		CH54_3079	3337953	3339404	+	mannitol dehydrogenase Rossmann domain protein	[G] COG0246 Mannitol-1-phosphate/altronate dehydrogenases	gene	gene3063	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3079
CH54_308	CH54_308		CH54_308	324062	324664	-	bacterial regulatory s%2C tetR family protein	[K] COG1309 Transcriptional regulator	gene	gene306	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_308
CH54_3080	CH54_3080		CH54_3080	3339415	3340905	+	hypothetical protein	D-galactarate dehydratase / Altronate hydrolase%2C C terminus family protein~[G] COG2721 Altronate dehydratase	gene	gene3064	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3080
CH54_3081	CH54_3081		CH54_3081	3341010	3341561	+	bacterial inner membrane family protein		gene	gene3065	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3081
CH54_3082	CH54_3082		CH54_3082	3341604	3342860	-	dicarboxylate symporter family protein	sodium:dicarboxylate symporter family protein~[E] COG3633 Na+/serine symporter	gene	gene3066	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3082
CH54_3083	CH54_3083		CH54_3083	3343362	3344348	-	integral membrane%2C TerC family protein	R_switched_Alx: integral membrane%2C TerC family protein~[P] COG0861 Membrane protein TerC%2C possibly involved in tellurium resistance	gene	gene3067	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3083
CH54_3084	CH54_3084		CH54_3084	3344653	3345648	-	oxidoreductase%2C NAD-binding Rossmann fold family protein	[R] COG0673 Predicted dehydrogenases and related proteins	gene	gene3068	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3084
CH54_3085	CH54_3085		CH54_3085	3345738	3346241	-	hypothetical protein	conserved hypothetical protein~[R] COG1451 Predicted metal-dependent hydrolase	gene	gene3069	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3085
CH54_3086	CH54_3086		CH54_3086	3346482	3348794	-	outer membrane autotransporter barrel domain protein	autotrans_barl: outer membrane autotransporter barrel domain protein~[MU] COG3468 Type V secretory pathway%2C adhesin AidA	gene	gene3070	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3086
CH54_3087	CH54_3087		CH54_3087	3349307	3350494	+	methyltransferase small domain protein	[J] COG2813 16S RNA G1207 methylase RsmC	gene	gene3071	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3087
CH54_3088	CH54_3088		CH54_3088	3350947	3352968	-	flavin oxidoreductase / NADH oxidase family protein	NADH:flavin oxidoreductase / NADH oxidase family protein~[C] COG1902 NADH:flavin oxidoreductases%2C Old Yellow Enzyme family	gene	gene3072	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3088
CH54_3089	CH54_3089		CH54_3089	3353136	3353267	-	putative membrane protein		gene	gene3073	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3089
CH54_309	CH54_309		CH54_309	324772	326403	-	hypothetical protein	conserved hypothetical protein~[R] COG2194 Predicted membrane-associated%2C metal-dependent hydrolase	gene	gene308	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_309
CH54_3090	CH54_3090		CH54_3090	3353553	3354119	-	hypothetical protein	conserved hypothetical protein~[S] COG3247 Uncharacterized conserved protein	gene	gene3074	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3090
CH54_3091	CH54_3091		CH54_3091	3354334	3354489	+	hypothetical protein		gene	gene3075	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3091
CH54_3092	CH54_3092		CH54_3092	3354835	3356235	+	glutamate decarboxylase	glu-decarb-GAD: glutamate decarboxylase~[E] COG0076 Glutamate decarboxylase and related PLP-dependent proteins	gene	gene3076	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3092
CH54_3093	CH54_3093		CH54_3093	3356313	3357884	+	amino acid permease family protein	[E] COG0531 Amino acid transporters	gene	gene3077	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3093
CH54_3094	CH54_3094	glsA	glsA	3357955	3358899	+	glutaminase A	gln_ase: glutaminase A~[E] COG2066 Glutaminase	gene	gene3078	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3094
CH54_3095	CH54_3095		CH54_3095	3358961	3360328	-	phosphotransferase system%2C EIIC family protein	[G] COG1263 Phosphotransferase system IIC components%2C glucose/maltose/N-acetylglucosamine-specific	gene	gene3079	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3095
CH54_3096	CH54_3096	murQ	murQ	3360415	3361323	-	N-acetylmuramic acid 6-phosphate etherase	[R] COG2103 Predicted sugar phosphate isomerase	gene	gene3080	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3096
CH54_3097	CH54_3097		CH54_3097	3361551	3362411	+	SIS domain protein	[K] COG1737 Transcriptional regulators	gene	gene3081	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3097
CH54_3098	CH54_3098		CH54_3098	3362751	3364622	+	hypothetical protein	glycosyl hydrolase family 3 N terminal domain protein~[G] COG1472 Beta-glucosidase-related glycosidases	gene	gene3082	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3098
CH54_3099	CH54_3099		CH54_3099	3364641	3365726	+	hypothetical protein	conserved hypothetical protein	gene	gene3083	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3099
CH54_31	CH54_31	csy1	csy1	31687	33030	+	CRISPR type I-F/YPEST-associated protein Csy1	cas_Csy1: CRISPR type I-F/YPEST-associated protein Csy1	gene	gene30	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_31
CH54_310	CH54_310		CH54_310	324708	324821	+	putative membrane protein		gene	gene307	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_310
CH54_3100	CH54_3100		CH54_3100	3365779	3367110	+	hypothetical protein	conserved hypothetical protein~[S] COG3876 Uncharacterized protein conserved in bacteria	gene	gene3084	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3100
CH54_3101	CH54_3101		CH54_3101	3367254	3367330	-	tRNA-Met		tRNA	gene3085	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3101
CH54_3102	CH54_3102	rpoD	rpoD	3367536	3369374	-	RNA polymerase sigma factor RpoD	rpoD_Cterm: RNA polymerase sigma factor RpoD~[K] COG0568 DNA-directed RNA polymerase%2C sigma subunit (sigma70/sigma32)	gene	gene3086	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3102
CH54_3103	CH54_3103	dnaG	dnaG	3369532	3371280	-	DNA primase	dnaG: DNA primase~[L] COG0358 DNA primase (bacterial type)	gene	gene3087	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3103
CH54_3104	CH54_3104	rpsU	rpsU	3371417	3371632	-	ribosomal protein S21	S21p: ribosomal protein S21~[J] COG0828 Ribosomal protein S21	gene	gene3088	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3104
CH54_3105	CH54_3105		CH54_3105	3371903	3372040	+	hypothetical protein		gene	gene3089	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3105
CH54_3106	CH54_3106	tsaD	tsaD	3372006	3373019	+	tRNA threonylcarbamoyl adenosine modification protein TsaD	T6A_TsaD_YgjD: tRNA threonylcarbamoyl adenosine modification protein TsaD~[O] COG0533 Metal-dependent proteases with possible chaperone activity	gene	gene3090	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3106
CH54_3107	CH54_3107	plsY	plsY	3373196	3373846	-	acyl-phosphate glycerol 3-phosphate acyltransferase	[S] COG0344 Predicted membrane protein	gene	gene3091	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3107
CH54_3108	CH54_3108	folB	folB	3373954	3374313	+	dihydroneopterin aldolase	folB: dihydroneopterin aldolase~[H] COG1539 Dihydroneopterin aldolase	gene	gene3092	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3108
CH54_3109	CH54_3109	uppP	uppP	3374494	3375312	+	undecaprenyl-diphosphatase UppP	undec_PP_bacA: undecaprenyl-diphosphatase UppP~[V] COG1968 Uncharacterized bacitracin resistance protein	gene	gene3093	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3109
CH54_311	CH54_311		CH54_311	326625	326864	+	hypothetical protein	conserved hypothetical protein~[R] COG3313 Predicted Fe-S protein	gene	gene309	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_311
CH54_3110	CH54_3110		CH54_3110	3375385	3376710	-	poly A polymerase head domain protein	[J] COG0617 tRNA nucleotidyltransferase/poly(A) polymerase	gene	gene3094	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3110
CH54_3111	CH54_3111		CH54_3111	3377034	3377654	-	bacterial SH3 domain protein	[T] COG3103 SH3 domain protein	gene	gene3095	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3111
CH54_3112	CH54_3112		CH54_3112	3377940	3379304	+	CYTH domain protein	[S] COG3025 Uncharacterized conserved protein	gene	gene3096	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3112
CH54_3113	CH54_3113		CH54_3113	3379330	3382182	+	glutamate-ammonia ligase adenylyltransferase family protein	[OT] COG1391 Glutamine synthetase adenylyltransferase	gene	gene3097	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3113
CH54_3114	CH54_3114	rfaE1	rfaE1	3382472	3383902	+	bifunctional protein RfaE%2C domain I	rfaE_dom_I: bifunctional protein RfaE%2C domain I~[M] COG2870 ADP-heptose synthase%2C bifunctional sugar kinase/adenylyltransferase	gene	gene3098	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3114
CH54_3115	CH54_3115		CH54_3115	3383981	3385231	+	amino acid permease family protein	[E] COG0531 Amino acid transporters	gene	gene3099	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3115
CH54_3116	CH54_3116		CH54_3116	3385281	3385580	-	membrane fusogenic activity family protein	[S] COG2960 Uncharacterized protein conserved in bacteria	gene	gene3100	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3116
CH54_3117	CH54_3117	ribB	ribB	3386018	3386671	+	3%2C4-dihydroxy-2-butanone-4-phosphate synthase	ribB: 3%2C4-dihydroxy-2-butanone-4-phosphate synthase~[H] COG0108 3%2C4-dihydroxy-2-butanone 4-phosphate synthase	gene	gene3101	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3117
CH54_3118	CH54_3118		CH54_3118	3386932	3387714	+	catalytic LigB subunit of aromatic ring-opening dioxygenase family protein	[S] COG3384 Uncharacterized conserved protein	gene	gene3102	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3118
CH54_3119	CH54_3119		CH54_3119	3388038	3389198	-	glutathionylspermidine synthase preATP-grasp family protein	[E] COG0754 Glutathionylspermidine synthase	gene	gene3103	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3119
CH54_312	CH54_312		CH54_312	326864	326986	+	hypothetical protein		gene	gene310	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_312
CH54_3120	CH54_3120		CH54_3120	3389209	3389901	-	hypothetical protein	conserved hypothetical protein~[S] COG5463 Predicted integral membrane protein	gene	gene3104	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3120
CH54_3121	CH54_3121		CH54_3121	3390139	3391611	-	type I secretion outer membrane%2C TolC family protein	type_I_sec_TolC: type I secretion outer membrane%2C TolC family protein~[MU] COG1538 Outer membrane protein	gene	gene3105	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3121
CH54_3122	CH54_3122		CH54_3122	3391929	3392561	+	nudix-type nucleoside diphosphatase%2C YffH/AdpP family protein	[LR] COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes	gene	gene3106	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3122
CH54_3123	CH54_3123		CH54_3123	3392577	3393002	+	hypothetical protein	conserved hypothetical protein~[S] COG3151 Uncharacterized protein conserved in bacteria	gene	gene3107	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3123
CH54_3124	CH54_3124		CH54_3124	3393082	3393909	+	calcineurin-like phosphoesterase family protein	[R] COG1409 Predicted phosphohydrolases	gene	gene3108	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3124
CH54_3125	CH54_3125		CH54_3125	3393910	3394491	+	hypothetical protein	conserved hypothetical protein~[R] COG3150 Predicted esterase	gene	gene3109	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3125
CH54_3126	CH54_3126	parE	parE	3394622	3396517	+	DNA topoisomerase IV%2C B subunit	parE_Gneg: DNA topoisomerase IV%2C B subunit~[L] COG0187 Type IIA topoisomerase (DNA gyrase/topo II%2C topoisomerase IV)%2C B subunit	gene	gene3110	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3126
CH54_3127	CH54_3127		CH54_3127	3396538	3397461	+	bacterial regulatory helix-turn-helix%2C lysR family protein	[K] COG0583 Transcriptional regulator	gene	gene3111	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3127
CH54_3128	CH54_3128		CH54_3128	3397577	3397882	-	antibiotic biosynthesis monooxygenase family protein	[S] COG1359 Uncharacterized conserved protein	gene	gene3112	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3128
CH54_3129	CH54_3129		CH54_3129	3397907	3398500	-	flavodoxin-like fold family protein	[R] COG2249 Putative NADPH-quinone reductase (modulator of drug activity B)	gene	gene3113	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3129
CH54_313	CH54_313		CH54_313	327002	327898	+	aldo/keto reductase family protein	[R] COG4989 Predicted oxidoreductase	gene	gene311	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_313
CH54_3130	CH54_3130	parC	parC	3398859	3401132	+	DNA topoisomerase IV%2C A subunit	parC_Gneg: DNA topoisomerase IV%2C A subunit~[L] COG0188 Type IIA topoisomerase (DNA gyrase/topo II%2C topoisomerase IV)%2C A subunit	gene	gene3114	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3130
CH54_3131	CH54_3131		CH54_3131	3401315	3402046	+	1-acylglycerol-3-phosphate O-acyltransferases domain protein	AGP_acyltrn: 1-acylglycerol-3-phosphate O-acyltransferases domain protein~[I] COG0204 1-acyl-sn-glycerol-3-phosphate acyltransferase	gene	gene3115	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3131
CH54_3132	CH54_3132		CH54_3132	3402287	3403714	+	multicopper oxidase family protein	[Q] COG2132 Putative multicopper oxidases	gene	gene3116	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3132
CH54_3133	CH54_3133		CH54_3133	3403946	3406231	+	radical SAM superfamily protein	[C] COG1032 Fe-S oxidoreductase	gene	gene3117	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3133
CH54_3134	CH54_3134		CH54_3134	3406251	3407078	-	aldo/keto reductase family protein	[R] COG0656 Aldo/keto reductases%2C related to diketogulonate reductase	gene	gene3118	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3134
CH54_3135	CH54_3135		CH54_3135	3407127	3408284	-	iron-containing alcohol dehydrogenase family protein	[C] COG1979 Uncharacterized oxidoreductases%2C Fe-dependent alcohol dehydrogenase family	gene	gene3119	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3135
CH54_3136	CH54_3136		CH54_3136	3408533	3409426	+	helix-turn-helix domain protein	[K] COG2207 AraC-type DNA-binding domain-containing proteins	gene	gene3120	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3136
CH54_3137	CH54_3137		CH54_3137	3409485	3410147	-	hypothetical protein	conserved hypothetical protein~[S] COG0586 Uncharacterized membrane-associated protein	gene	gene3121	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3137
CH54_3138	CH54_3138	metC	metC	3410354	3411565	-	cystathionine beta-lyase	cysta_beta_ly_B: cystathionine beta-lyase~[E] COG0626 Cystathionine beta-lyases/cystathionine gamma-synthases	gene	gene3122	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3138
CH54_3139	CH54_3139	exbB	exbB	3412048	3413058	+	tonB-system energizer ExbB	exbB: tonB-system energizer ExbB~[U] COG0811 Biopolymer transport proteins	gene	gene3123	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3139
CH54_314	CH54_314		CH54_314	327923	329983	-	aluminum activated malate transporter family protein	[S] COG1289 Predicted membrane protein	gene	gene312	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_314
CH54_3140	CH54_3140	exbD	exbD	3413062	3413487	+	TonB system transport protein ExbD	exbD_1: TonB system transport protein ExbD~[U] COG0848 Biopolymer transport protein	gene	gene3124	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3140
CH54_3141	CH54_3141		CH54_3141	3413524	3415050	-	von Willebrand factor type A domain protein	[U] COG4961 Flp pilus assembly protein TadG	gene	gene3125	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3141
CH54_3142	CH54_3142		CH54_3142	3415095	3415658	-	hypothetical protein		gene	gene3126	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3142
CH54_3143	CH54_3143		CH54_3143	3415642	3416109	-	tadE-like family protein		gene	gene3127	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3143
CH54_3144	CH54_3144		CH54_3144	3416109	3416864	-	tetratricopeptide repeat family protein	[U] COG5010 Flp pilus assembly protein TadD%2C contains TPR repeats	gene	gene3128	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3144
CH54_3145	CH54_3145		CH54_3145	3416857	3417672	-	type II secretion system (T2SS)%2C F family protein	[NU] COG2064 Flp pilus assembly protein TadC	gene	gene3129	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3145
CH54_3146	CH54_3146		CH54_3146	3417669	3418550	-	type II secretion system (T2SS)%2C F family protein	[U] COG4965 Flp pilus assembly protein TadB	gene	gene3130	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3146
CH54_3147	CH54_3147		CH54_3147	3418547	3419833	-	type II/IV secretion system family protein	[U] COG4962 Flp pilus assembly protein%2C ATPase CpaF	gene	gene3131	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3147
CH54_3148	CH54_3148		CH54_3148	3419837	3420970	-	hypothetical protein	[U] COG4963 Flp pilus assembly protein%2C ATPase CpaE	gene	gene3132	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3148
CH54_3149	CH54_3149		CH54_3149	3420961	3421242	-	hypothetical protein	conserved hypothetical protein	gene	gene3133	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3149
CH54_315	CH54_315		CH54_315	329987	330757	-	efflux transporter%2C RND family%2C MFP subunit	RND_mfp: efflux transporter%2C RND family%2C MFP subunit~[V] COG1566 Multidrug resistance efflux pump	gene	gene313	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_315
CH54_3150	CH54_3150		CH54_3150	3421239	3422555	-	bacterial type II and III secretion system family protein	[U] COG4964 Flp pilus assembly protein%2C secretin CpaC	gene	gene3134	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3150
CH54_3151	CH54_3151		CH54_3151	3422552	3423391	-	hypothetical protein		gene	gene3135	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3151
CH54_3152	CH54_3152		CH54_3152	3423431	3423901	-	type IV leader peptidase family protein	[OU] COG4960 Flp pilus assembly protein%2C protease CpaA	gene	gene3136	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3152
CH54_3153	CH54_3153		CH54_3153	3423928	3424140	-	putative pilin protein%2C major subunit		gene	gene3137	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3153
CH54_3154	CH54_3154		CH54_3154	3424342	3424941	-	hypothetical protein		gene	gene3138	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3154
CH54_3155	CH54_3155		CH54_3155	3425458	3426123	+	2OG-Fe(II) oxygenase superfamily protein	[L] COG3145 Alkylated DNA repair protein	gene	gene3139	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3155
CH54_3156	CH54_3156		CH54_3156	3426191	3429322	-	heavy metal efflux pump%2C CzcA family protein	2A0601: heavy metal efflux pump%2C CzcA family protein~[P] COG3696 Putative silver efflux pump	gene	gene3140	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3156
CH54_3157	CH54_3157		CH54_3157	3429319	3430857	-	efflux transporter%2C RND family%2C MFP subunit	RND_mfp: efflux transporter%2C RND family%2C MFP subunit~[M] COG0845 Membrane-fusion protein	gene	gene3141	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3157
CH54_3158	CH54_3158		CH54_3158	3430854	3432149	-	outer membrane efflux family protein		gene	gene3142	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3158
CH54_3159	CH54_3159		CH54_3159	3432163	3432552	-	copper binding periplasmic CusF family protein		gene	gene3143	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3159
CH54_316	CH54_316		CH54_316	330851	331087	-	hypothetical protein	conserved hypothetical protein	gene	gene314	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_316
CH54_3160	CH54_3160		CH54_3160	3432630	3433043	-	hypothetical protein		gene	gene3144	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3160
CH54_3161	CH54_3161		CH54_3161	3433354	3435567	-	TonB-dependent siderophore receptor family protein	tonB-siderophor: TonB-dependent siderophore receptor family protein~[P] COG1629 Outer membrane receptor proteins%2C mostly Fe transport	gene	gene3145	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3161
CH54_3162	CH54_3162		CH54_3162	3436025	3437329	+	hypothetical protein	conserved hypothetical protein~[P] COG2382 Enterochelin esterase and related enzymes	gene	gene3146	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3162
CH54_3163	CH54_3163		CH54_3163	3437343	3437594	+	mbtH-like family protein	[S] COG3251 Uncharacterized protein conserved in bacteria	gene	gene3147	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3163
CH54_3164	CH54_3164		CH54_3164	3437684	3444874	+	amino acid adenylation domain protein	AA-adenyl-dom: amino acid adenylation domain protein~[Q] COG1020 Non-ribosomal peptide synthetase modules and related proteins	gene	gene3148	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3164
CH54_3165	CH54_3165		CH54_3165	3445600	3446871	-	major Facilitator Superfamily protein	[GEPR] COG0477 Permeases of the major facilitator superfamily	gene	gene3149	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3165
CH54_3166	CH54_3166		CH54_3166	3446901	3447038	+	hypothetical protein		gene	gene3150	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3166
CH54_3167	CH54_3167		CH54_3167	3447083	3448150	+	fecCD transport family protein	[P] COG0609 ABC-type Fe3+-siderophore transport system%2C permease component	gene	gene3151	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3167
CH54_3168	CH54_3168		CH54_3168	3448147	3449190	+	fecCD transport family protein	[P] COG4779 ABC-type enterobactin transport system%2C permease component	gene	gene3152	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3168
CH54_3169	CH54_3169		CH54_3169	3449187	3449999	+	ABC transporter family protein	[PH] COG1120 ABC-type cobalamin/Fe3+-siderophores transport systems%2C ATPase components	gene	gene3153	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3169
CH54_317	CH54_317		CH54_317	331268	331699	+	winged helix DNA-binding domain protein	[K] COG1846 Transcriptional regulators	gene	gene315	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_317
CH54_3170	CH54_3170		CH54_3170	3450109	3451272	-	periplasmic binding family protein	[P] COG4592 ABC-type Fe2+-enterobactin transport system%2C periplasmic component	gene	gene3154	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3170
CH54_3171	CH54_3171		CH54_3171	3451332	3452564	+	isochorismate synthase family protein	isochor_syn: isochorismate synthase family protein~[HQ] COG1169 Isochorismate synthase	gene	gene3155	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3171
CH54_3172	CH54_3172		CH54_3172	3452561	3454207	+	(2%2C3-dihydroxybenzoyl)adenylate synthase	DHB_AMP_lig: (2%2C3-dihydroxybenzoyl)adenylate synthase~[Q] COG1021 Peptide arylation enzymes	gene	gene3156	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3172
CH54_3173	CH54_3173		CH54_3173	3454218	3455126	+	isochorismatase family protein	[Q] COG1535 Isochorismate hydrolase	gene	gene3157	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3173
CH54_3174	CH54_3174		CH54_3174	3455126	3455935	+	2%2C3-dihydro-2%2C3-dihydroxybenzoate dehydrogenase	dhbA_paeA: 2%2C3-dihydro-2%2C3-dihydroxybenzoate dehydrogenase~[IQR] COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)	gene	gene3158	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3174
CH54_3175	CH54_3175		CH54_3175	3456347	3457657	+	sugar (and other) transporter family protein	[GEPR] COG0477 Permeases of the major facilitator superfamily	gene	gene3159	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3175
CH54_3176	CH54_3176		CH54_3176	3457683	3458678	+	3-beta hydroxysteroid dehydrogenase/isomerase family protein	[MG] COG0451 Nucleoside-diphosphate-sugar epimerases	gene	gene3160	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3176
CH54_3177	CH54_3177		CH54_3177	3458876	3459865	+	hypothetical protein	[S] COG4461 Uncharacterized protein conserved in bacteria%2C putative lipoprotein	gene	gene3161	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3177
CH54_3178	CH54_3178		CH54_3178	3460044	3462140	-	FHIPEP family protein	[NU] COG1298 Flagellar biosynthesis pathway%2C component FlhA	gene	gene3162	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3178
CH54_3179	CH54_3179		CH54_3179	3462127	3463260	-	flhB HrpN YscU SpaS family protein	[NU] COG1377 Flagellar biosynthesis pathway%2C component FlhB	gene	gene3163	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3179
CH54_318	CH54_318		CH54_318	331854	332321	-	glycine zipper 2TM domain protein	[M] COG3133 Outer membrane lipoprotein	gene	gene316	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_318
CH54_3180	CH54_3180	fliR	fliR	3463260	3464033	-	flagellar biosynthetic protein FliR	fliR: flagellar biosynthetic protein FliR~[NU] COG1684 Flagellar biosynthesis pathway%2C component FliR	gene	gene3164	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3180
CH54_3181	CH54_3181	fliQ	fliQ	3464040	3464312	-	flagellar biosynthetic protein FliQ	fliQ: flagellar biosynthetic protein FliQ~[NU] COG1987 Flagellar biosynthesis pathway%2C component FliQ	gene	gene3165	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3181
CH54_3182	CH54_3182	fliP	fliP	3464314	3465084	-	flagellar biosynthetic protein FliP	fliP: flagellar biosynthetic protein FliP~[NU] COG1338 Flagellar biosynthesis pathway%2C component FliP	gene	gene3166	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3182
CH54_3183	CH54_3183	fliN	fliN	3465081	3465470	-	flagellar motor switch protein FliN	fliN: flagellar motor switch protein FliN~[NU] COG1886 Flagellar motor switch/type III secretory pathway protein	gene	gene3167	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3183
CH54_3184	CH54_3184		CH54_3184	3465463	3466338	-	surface presentation of antigens family protein		gene	gene3168	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3184
CH54_3185	CH54_3185		CH54_3185	3466749	3467807	+	AAA domain family protein	[T] COG2204 Response regulator containing CheY-like receiver%2C AAA-type ATPase%2C and DNA-binding domains	gene	gene3169	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3185
CH54_3186	CH54_3186	fliE	fliE	3467819	3468199	+	flagellar hook-basal body complex protein FliE	fliE: flagellar hook-basal body complex protein FliE~[NU] COG1677 Flagellar hook-basal body protein	gene	gene3170	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3186
CH54_3187	CH54_3187	fliF	fliF	3468209	3469834	+	flagellar M-ring protein FliF	fliF: flagellar M-ring protein FliF~[NU] COG1766 Flagellar biosynthesis/type III secretory pathway lipoprotein	gene	gene3171	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3187
CH54_3188	CH54_3188		CH54_3188	3469806	3470861	+	fliG middle domain protein	[N] COG1536 Flagellar motor switch protein	gene	gene3172	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3188
CH54_3189	CH54_3189		CH54_3189	3470866	3471582	+	hypothetical protein	essential Yae1%2C N terminal family protein~[NU] COG1317 Flagellar biosynthesis/type III secretory pathway protein	gene	gene3173	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3189
CH54_319	CH54_319		CH54_319	332764	333876	+	hypothetical protein	conserved hypothetical protein~[O] COG2377 Predicted molecular chaperone distantly related to HSP70-fold metalloproteases	gene	gene317	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_319
CH54_3190	CH54_3190		CH54_3190	3471575	3472924	+	ATPase%2C FliI/YscN family protein	fliI_yscN: ATPase%2C FliI/YscN family protein~[NU] COG1157 Flagellar biosynthesis/type III secretory pathway ATPase	gene	gene3174	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3190
CH54_3191	CH54_3191	fliJ	fliJ	3472921	3473352	+	flagellar export protein FliJ	flagell_FliJ: flagellar export protein FliJ	gene	gene3175	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3191
CH54_3192	CH54_3192		CH54_3192	3473556	3473996	-	flgN family protein		gene	gene3176	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3192
CH54_3193	CH54_3193		CH54_3193	3474004	3474279	-	anti-sigma-28 factor%2C FlgM family protein		gene	gene3177	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3193
CH54_3194	CH54_3194	flgA	flgA	3474391	3475209	-	flagella basal body P-ring formation protein FlgA	flgA_cterm: flagella basal body P-ring formation protein FlgA~[NO] COG1261 Flagellar basal body P-ring biosynthesis protein	gene	gene3178	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3194
CH54_3195	CH54_3195	flgB	flgB	3475298	3475648	+	flagellar basal-body rod protein FlgB	flgB: flagellar basal-body rod protein FlgB~[N] COG1815 Flagellar basal body protein	gene	gene3179	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3195
CH54_3196	CH54_3196	flgC	flgC	3475690	3476076	+	flagellar basal-body rod protein FlgC	flgC: flagellar basal-body rod protein FlgC~[N] COG1558 Flagellar basal body rod protein	gene	gene3180	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3196
CH54_3197	CH54_3197		CH54_3197	3476079	3476735	+	hypothetical protein	flagellar hook capping - N-terminal region family protein~[N] COG1843 Flagellar hook capping protein	gene	gene3181	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3197
CH54_3198	CH54_3198		CH54_3198	3476781	3477992	+	flagellar hook-basal body family protein	flgEFG_subfam: flagellar hook-basal body family protein~[N] COG1749 Flagellar hook protein FlgE	gene	gene3182	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3198
CH54_3199	CH54_3199	flgF	flgF	3477992	3478723	+	flagellar basal-body rod protein FlgF	flgF: flagellar basal-body rod protein FlgF~[N] COG4787 Flagellar basal body rod protein	gene	gene3183	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3199
CH54_32	CH54_32	csy2	csy2	33027	33986	+	CRISPR type I-F/YPEST-associated protein Csy2	cas_Csy2: CRISPR type I-F/YPEST-associated protein Csy2	gene	gene31	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_32
CH54_320	CH54_320		CH54_320	333932	334252	+	membrane-bound lysozyme-inhibitor of c-type lysozyme family protein	[R] COG3895 Predicted periplasmic protein	gene	gene318	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_320
CH54_3200	CH54_3200	flgG	flgG	3478794	3479579	+	flagellar basal-body rod protein FlgG	flgG_G_neg: flagellar basal-body rod protein FlgG~[N] COG4786 Flagellar basal body rod protein	gene	gene3184	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3200
CH54_3201	CH54_3201		CH54_3201	3479644	3480279	+	flagellar L-ring family protein	[N] COG2063 Flagellar basal body L-ring protein	gene	gene3185	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3201
CH54_3202	CH54_3202		CH54_3202	3480292	3481389	+	flagellar P-ring family protein	[N] COG1706 Flagellar basal-body P-ring protein	gene	gene3186	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3202
CH54_3203	CH54_3203		CH54_3203	3481399	3481692	+	rod binding family protein	[MNO] COG3951 Rod binding protein	gene	gene3187	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3203
CH54_3204	CH54_3204	flgK	flgK	3481823	3483193	+	flagellar hook-associated protein FlgK	flgK_ends: flagellar hook-associated protein FlgK~[N] COG1256 Flagellar hook-associated protein	gene	gene3188	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3204
CH54_3205	CH54_3205	flgL	flgL	3483230	3484147	+	flagellar hook-associated protein 3	flagell_flgL: flagellar hook-associated protein 3~[N] COG1344 Flagellin and related hook-associated proteins	gene	gene3189	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3205
CH54_3206	CH54_3206		CH54_3206	3484159	3485169	+	hypothetical protein		gene	gene3190	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3206
CH54_3207	CH54_3207		CH54_3207	3485232	3485693	-	hypothetical protein	conserved hypothetical protein	gene	gene3191	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3207
CH54_3208	CH54_3208		CH54_3208	3485674	3486729	-	hypothetical protein	transcriptional regulatory%2C C terminal family protein~[K] COG3710 DNA-binding winged-HTH domains	gene	gene3192	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3208
CH54_3209	CH54_3209		CH54_3209	3487245	3488522	+	hypothetical protein	bacterial flagellin C-terminal helical region family protein~[N] COG1344 Flagellin and related hook-associated proteins	gene	gene3193	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3209
CH54_321	CH54_321	pdxH	pdxH	334297	335013	+	pyridoxamine 5'-phosphate oxidase	pdxH: pyridoxamine 5'-phosphate oxidase~[H] COG0259 Pyridoxamine-phosphate oxidase	gene	gene319	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_321
CH54_3210	CH54_3210		CH54_3210	3488750	3490021	+	flagellar hook-associated family protein	[N] COG1345 Flagellar capping protein	gene	gene3194	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3210
CH54_3211	CH54_3211	fliS	fliS	3490021	3490404	+	flagellar protein FliS	fliS: flagellar protein FliS~[NUO] COG1516 Flagellin-specific chaperone FliS	gene	gene3195	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3211
CH54_3212	CH54_3212		CH54_3212	3490404	3490733	+	hypothetical protein		gene	gene3196	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3212
CH54_3213	CH54_3213		CH54_3213	3490730	3491707	+	flagellar hook-length control FliK family protein	[N] COG3144 Flagellar hook-length control protein	gene	gene3197	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3213
CH54_3214	CH54_3214		CH54_3214	3491718	3492185	+	flagellar basal body-associated FliL family protein		gene	gene3198	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3214
CH54_3215	CH54_3215		CH54_3215	3492200	3492886	+	RNA polymerase sigma factor%2C FliA/WhiG family protein	fliA_WhiG: RNA polymerase sigma factor%2C FliA/WhiG family protein~[K] COG1191 DNA-directed RNA polymerase specialized sigma subunit	gene	gene3199	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3215
CH54_3216	CH54_3216	motA	motA	3492902	3493768	+	flagellar motor stator protein MotA	motA1: flagellar motor stator protein MotA~[N] COG1291 Flagellar motor component	gene	gene3200	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3216
CH54_3217	CH54_3217		CH54_3217	3493770	3494678	+	membrane MotB of proton-channel complex MotA/MotB family protein	[N] COG1360 Flagellar motor protein	gene	gene3201	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3217
CH54_3218	CH54_3218		CH54_3218	3494898	3495365	-	glycine zipper 2TM domain protein	[M] COG3133 Outer membrane lipoprotein	gene	gene3202	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3218
CH54_3219	CH54_3219		CH54_3219	3496049	3497164	+	hydrogenase family protein	hydA: hydrogenase family protein~[C] COG1740 Ni%2CFe-hydrogenase I small subunit	gene	gene3203	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3219
CH54_322	CH54_322	tyrS	tyrS	335134	336408	+	tyrosine--tRNA ligase	tyrS: tyrosine--tRNA ligase~[J] COG0162 Tyrosyl-tRNA synthetase	gene	gene320	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_322
CH54_3220	CH54_3220		CH54_3220	3497167	3498195	+	4Fe-4S dicluster domain protein	[C] COG0437 Fe-S-cluster-containing hydrogenase components 1	gene	gene3204	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3220
CH54_3221	CH54_3221		CH54_3221	3498182	3499381	+	putative membrane protein	[C] COG5557 Polysulphide reductase	gene	gene3205	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3221
CH54_3222	CH54_3222		CH54_3222	3499359	3501053	+	nickel-dependent hydrogenase family protein	[C] COG0374 Ni%2CFe-hydrogenase I large subunit	gene	gene3206	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3222
CH54_3223	CH54_3223	hybD	hybD	3501053	3501544	+	hydrogenase expression/formation protein	hupD: hydrogenase expression/formation protein~[C] COG0680 Ni%2CFe-hydrogenase maturation factor	gene	gene3207	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3223
CH54_3224	CH54_3224		CH54_3224	3501537	3502034	+	[NiFe] hydrogenase assembly chaperone%2C HybE family domain protein	hydrog_HybE: [NiFe] hydrogenase assembly chaperone%2C HybE family domain protein	gene	gene3208	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3224
CH54_3225	CH54_3225	hypA	hypA	3502027	3502368	+	hydrogenase nickel insertion protein HypA	hypA: hydrogenase nickel insertion protein HypA~[R] COG0375 Zn finger protein HypA/HybF (possibly regulating hydrogenase expression)	gene	gene3209	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3225
CH54_3226	CH54_3226	hypB	hypB	3502389	3503465	+	hydrogenase accessory protein HypB	hypB: hydrogenase accessory protein HypB~[OK] COG0378 Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase	gene	gene3210	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3226
CH54_3227	CH54_3227	hypC	hypC	3503456	3503740	+	hydrogenase assembly chaperone HypC/HupF	hypC_hupF: hydrogenase assembly chaperone HypC/HupF~[O] COG0298 Hydrogenase maturation factor	gene	gene3211	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3227
CH54_3228	CH54_3228	hypD	hypD	3503703	3504830	+	hydrogenase expression/formation protein HypD	hypD: hydrogenase expression/formation protein HypD~[O] COG0409 Hydrogenase maturation factor	gene	gene3212	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3228
CH54_3229	CH54_3229	hypE	hypE	3504976	3505992	+	hydrogenase expression/formation protein HypE	hypE: hydrogenase expression/formation protein HypE~[O] COG0309 Hydrogenase maturation factor	gene	gene3213	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3229
CH54_323	CH54_323		CH54_323	336482	337342	+	pyridoxal kinase	pyridox_kin: pyridoxal kinase~[H] COG2240 Pyridoxal/pyridoxine/pyridoxamine kinase	gene	gene321	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_323
CH54_3230	CH54_3230	hypF	hypF	3506525	3508819	+	carbamoyltransferase HypF	hypF: carbamoyltransferase HypF~[O] COG0068 Hydrogenase maturation factor	gene	gene3214	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3230
CH54_3231	CH54_3231		CH54_3231	3509148	3509831	+	hypothetical protein	conserved hypothetical protein	gene	gene3215	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3231
CH54_3232	CH54_3232		CH54_3232	3509895	3512504	-	diguanylate cyclase domain protein	GGDEF: diguanylate cyclase domain protein~[T] COG2200 FOG: EAL domain	gene	gene3216	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3232
CH54_3233	CH54_3233		CH54_3233	3512997	3514199	+	efflux transporter%2C RND family%2C MFP subunit	RND_mfp: efflux transporter%2C RND family%2C MFP subunit~[M] COG0845 Membrane-fusion protein	gene	gene3217	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3233
CH54_3234	CH54_3234		CH54_3234	3514212	3517337	+	RND transporter%2C hydrophobe/amphiphile efflux-1 family protein	2A0602: RND transporter%2C hydrophobe/amphiphile efflux-1 family protein~[V] COG0841 Cation/multidrug efflux pump	gene	gene3218	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3234
CH54_3235	CH54_3235		CH54_3235	3517764	3518324	+	hypothetical protein		gene	gene3219	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3235
CH54_3236	CH54_3236		CH54_3236	3519220	3532230	+	outer membrane autotransporter barrel domain protein	autotrans_barl: outer membrane autotransporter barrel domain protein~[MU] COG3468 Type V secretory pathway%2C adhesin AidA	gene	gene3220	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3236
CH54_3237	CH54_3237		CH54_3237	3532656	3534263	+	abgT transporter family protein	[H] COG2978 Putative p-aminobenzoyl-glutamate transporter	gene	gene3221	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3237
CH54_3238	CH54_3238	pepT	pepT	3534298	3535530	+	peptidase T	peptidase-T: peptidase T~[E] COG2195 Di- and tripeptidases	gene	gene3222	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3238
CH54_3239	CH54_3239	pNaS	pNaS	3535590	3537209	-	sodium-dependent inorganic phosphate (Pi) transporter family protein	2a58: sodium-dependent inorganic phosphate (Pi) transporter family protein~[P] COG1283 Na+/phosphate symporter	gene	gene3223	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3239
CH54_324	CH54_324		CH54_324	337402	338004	-	hypothetical protein	glutathione S-transferase%2C N-terminal domain protein~[O] COG0625 Glutathione S-transferase	gene	gene322	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_324
CH54_3240	CH54_3240		CH54_3240	3537242	3538225	-	inosine-uridine preferring nucleoside hydrolase family protein	[F] COG1957 Inosine-uridine nucleoside N-ribohydrolase	gene	gene3224	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3240
CH54_3241	CH54_3241		CH54_3241	3538254	3539302	-		periplasmic binding -like domain protein%3Bbacterial regulatory s%2C lacI family protein	pseudogene	gene3225	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3241
CH54_3243	CH54_3243		CH54_3243	3539518	3540921	-	sugar (and other) transporter family protein	[GEPR] COG0477 Permeases of the major facilitator superfamily	gene	gene3226	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3243
CH54_3244	CH54_3244		CH54_3244	3541526	3542083	+	metA-pathway of phenol degradation family protein		gene	gene3227	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3244
CH54_3245	CH54_3245		CH54_3245	3542848	3544431	+	hypothetical protein	conserved hypothetical protein	gene	gene3228	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3245
CH54_3246	CH54_3246		CH54_3246	3544577	3545530	+	periplasmic binding family protein	[P] COG4607 ABC-type enterochelin transport system%2C periplasmic component	gene	gene3229	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3246
CH54_3247	CH54_3247		CH54_3247	3545540	3546499	+	fecCD transport family protein	[P] COG4606 ABC-type enterochelin transport system%2C permease component	gene	gene3230	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3247
CH54_3248	CH54_3248		CH54_3248	3546489	3547496	+	fecCD transport family protein	[P] COG4605 ABC-type enterochelin transport system%2C permease component	gene	gene3231	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3248
CH54_3249	CH54_3249		CH54_3249	3547493	3548251	+	ABC transporter family protein	[P] COG4604 ABC-type enterochelin transport system%2C ATPase component	gene	gene3232	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3249
CH54_325	CH54_325		CH54_325	338188	338451	-	hypothetical protein	conserved hypothetical protein	gene	gene323	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_325
CH54_3250	CH54_3250	map	map	3548332	3549117	-	methionine aminopeptidase%2C type I	met_pdase_I: methionine aminopeptidase%2C type I~[J] COG0024 Methionine aminopeptidase	gene	gene3233	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3250
CH54_3251	CH54_3251		CH54_3251	3549114	3549365	-	hypothetical protein	conserved hypothetical protein	gene	gene3234	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3251
CH54_3252	CH54_3252		CH54_3252	3549749	3551212	+	amidohydrolase family protein	[Q] COG1228 Imidazolonepropionase and related amidohydrolases	gene	gene3235	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3252
CH54_3253	CH54_3253		CH54_3253	3551277	3551600	+	putative membrane protein		gene	gene3236	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3253
CH54_3254	CH54_3254		CH54_3254	3551610	3552659	+	efflux transporter%2C RND family%2C MFP subunit	RND_mfp: efflux transporter%2C RND family%2C MFP subunit~[V] COG1566 Multidrug resistance efflux pump	gene	gene3237	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3254
CH54_3255	CH54_3255		CH54_3255	3552643	3554562	+	fusaric acid resistance family protein	[S] COG1289 Predicted membrane protein	gene	gene3238	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3255
CH54_3256	CH54_3256		CH54_3256	3554564	3556084	+	outer membrane efflux family protein	[MU] COG1538 Outer membrane protein	gene	gene3239	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3256
CH54_3257	CH54_3257		CH54_3257	3556205	3557278	-	linear amide C-N hydrolase%2C choloylglycine hydrolase family protein	[M] COG3049 Penicillin V acylase and related amidases	gene	gene3240	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3257
CH54_3258	CH54_3258		CH54_3258	3558393	3558893	+	hypothetical protein	conserved hypothetical protein~[S] COG3516 Uncharacterized protein conserved in bacteria	gene	gene3241	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3258
CH54_3259	CH54_3259		CH54_3259	3558942	3560489	+	hypothetical protein	conserved hypothetical protein~[S] COG3517 Uncharacterized protein conserved in bacteria	gene	gene3242	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3259
CH54_326	CH54_326		CH54_326	338686	339276	-	yip1 domain protein		gene	gene324	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_326
CH54_3260	CH54_3260		CH54_3260	3560501	3561850	+	hypothetical protein	conserved hypothetical protein~[S] COG3522 Uncharacterized protein conserved in bacteria	gene	gene3243	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3260
CH54_3261	CH54_3261		CH54_3261	3561847	3562536	+	type IV/VI secretion system%2C DotU family domain protein	IV_VI_DotU: type IV/VI secretion system%2C DotU family domain protein~[S] COG3455 Uncharacterized protein conserved in bacteria	gene	gene3244	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3261
CH54_3262	CH54_3262		CH54_3262	3562536	3564179	+	ompA family protein	[M] COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)proteins	gene	gene3245	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3262
CH54_3263	CH54_3263		CH54_3263	3564274	3564765	+	type VI secretion system effector%2C Hcp1 family protein	VI_effect_Hcp1: type VI secretion system effector%2C Hcp1 family protein~[S] COG3157 Hemolysin-coregulated protein (uncharacterized)	gene	gene3246	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3263
CH54_3264	CH54_3264	clpV	clpV	3565063	3567714	+	type VI secretion ATPase%2C ClpV1 family	VI_ClpV1: type VI secretion ATPase%2C ClpV1 family~[O] COG0542 ATPases with chaperone activity%2C ATP-binding subunit	gene	gene3247	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3264
CH54_3265	CH54_3265		CH54_3265	3567707	3570064	+	Rhs element Vgr family protein	vgr_GE: Rhs element Vgr family protein~[S] COG3501 Uncharacterized protein conserved in bacteria	gene	gene3248	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3265
CH54_3266	CH54_3266		CH54_3266	3570080	3572761	+	hypothetical protein	[R] COG3179 Predicted chitinase	gene	gene3249	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3266
CH54_3267	CH54_3267		CH54_3267	3572758	3573228	+	hypothetical protein		gene	gene3250	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3267
CH54_3268	CH54_3268		CH54_3268	3573768	3574139	+	hypothetical protein	conserved hypothetical protein~[S] COG3755 Uncharacterized protein conserved in bacteria	gene	gene3251	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3268
CH54_3269	CH54_3269		CH54_3269	3574227	3574697	+	hypothetical protein		gene	gene3252	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3269
CH54_327	CH54_327		CH54_327	339472	339825	+	glyoxalase-like domain protein	[R] COG3324 Predicted enzyme related to lactoylglutathione lyase	gene	gene325	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_327
CH54_3270	CH54_3270		CH54_3270	3574684	3575526	+	hypothetical protein		gene	gene3253	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3270
CH54_3271	CH54_3271		CH54_3271	3576329	3577114	+	hypothetical protein		gene	gene3254	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3271
CH54_3272	CH54_3272		CH54_3272	3577674	3578144	+	hypothetical protein		gene	gene3255	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3272
CH54_3273	CH54_3273		CH54_3273	3578267	3578986	+	hypothetical protein	[R] COG3179 Predicted chitinase	gene	gene3256	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3273
CH54_3274	CH54_3274		CH54_3274	3578973	3579830	+	hypothetical protein		gene	gene3257	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3274
CH54_3275	CH54_3275		CH54_3275	3580776	3581039	+	PAAR motif family protein	[S] COG4104 Uncharacterized conserved protein	gene	gene3258	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3275
CH54_3276	CH54_3276		CH54_3276	3581042	3582247	+	hypothetical protein		gene	gene3259	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3276
CH54_3277	CH54_3277		CH54_3277	3582244	3585624	+	intracellular multiplication and macrophage-killing family protein	[S] COG3523 Uncharacterized protein conserved in bacteria	gene	gene3260	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3277
CH54_3278	CH54_3278		CH54_3278	3585688	3587295	+	hypothetical protein	impA-related N-terminal family protein~[S] COG3515 Uncharacterized protein conserved in bacteria	gene	gene3261	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3278
CH54_3279	CH54_3279		CH54_3279	3587335	3589104	+	hypothetical protein	conserved hypothetical protein~[S] COG3519 Uncharacterized protein conserved in bacteria	gene	gene3262	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3279
CH54_328	CH54_328		CH54_328	339888	341429	-	amino acid/peptide transporter family protein	yjdL_sub1_fam: amino acid/peptide transporter family protein~[E] COG3104 Dipeptide/tripeptide permease	gene	gene326	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_328
CH54_3280	CH54_3280		CH54_3280	3589068	3590150	+	hypothetical protein	conserved hypothetical protein~[S] COG3520 Uncharacterized protein conserved in bacteria	gene	gene3263	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3280
CH54_3281	CH54_3281		CH54_3281	3590186	3590698	+	type VI secretion lipofamily protein	[S] COG3521 Uncharacterized protein conserved in bacteria	gene	gene3264	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3281
CH54_3282	CH54_3282		CH54_3282	3590703	3593165	+	Rhs element Vgr family protein	vgr_GE: Rhs element Vgr family protein~[S] COG3501 Uncharacterized protein conserved in bacteria	gene	gene3265	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3282
CH54_3283	CH54_3283		CH54_3283	3593171	3594145	+	hypothetical protein		gene	gene3266	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3283
CH54_3284	CH54_3284		CH54_3284	3594147	3594533	+	hypothetical protein		gene	gene3267	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3284
CH54_3285	CH54_3285		CH54_3285	3594640	3595068	-	hypothetical protein		gene	gene3268	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3285
CH54_3286	CH54_3286		CH54_3286	3595124	3595807	+	Rhs element Vgr family protein	vgr_GE: Rhs element Vgr family protein~[S] COG3501 Uncharacterized protein conserved in bacteria	gene	gene3269	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3286
CH54_3287	CH54_3287		CH54_3287	3595890	3596432	+	hypothetical protein	conserved hypothetical protein	gene	gene3270	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3287
CH54_3288	CH54_3288		CH54_3288	3596435	3598222	+	hypothetical protein	conserved hypothetical protein	gene	gene3271	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3288
CH54_3289	CH54_3289		CH54_3289	3598325	3598690	+	putative membrane protein		gene	gene3272	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3289
CH54_329	CH54_329		CH54_329	341975	342880	+	bacterial regulatory helix-turn-helix%2C lysR family protein	[K] COG0583 Transcriptional regulator	gene	gene327	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_329
CH54_3290	CH54_3290		CH54_3290	3598726	3599055	+	putative membrane protein		gene	gene3273	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3290
CH54_3291	CH54_3291		CH54_3291	3599529	3599978	+	lysozyme family protein	[S] COG3518 Uncharacterized protein conserved in bacteria	gene	gene3274	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3291
CH54_3292	CH54_3292		CH54_3292	3599978	3601408	+	hypothetical protein	impA-related N-terminal family protein~[S] COG3515 Uncharacterized protein conserved in bacteria	gene	gene3275	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3292
CH54_3293	CH54_3293		CH54_3293	3602185	3603195	-	luciferase oxidoreductase%2C group 1 family protein	oxido_grp_1: luciferase oxidoreductase%2C group 1 family protein~[C] COG2141 Coenzyme F420-dependent N5%2CN10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases	gene	gene3277	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3293
CH54_3294	CH54_3294		CH54_3294	3601925	3602188	+	hypothetical protein		gene	gene3276	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3294
CH54_3295	CH54_3295		CH54_3295	3603214	3604167	-	bacterial extracellular solute-binding s%2C 3 family protein	[P] COG0715 ABC-type nitrate/sulfonate/bicarbonate transport systems%2C periplasmic components	gene	gene3278	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3295
CH54_3296	CH54_3296		CH54_3296	3604185	3604937	-	ABC transporter family protein	[P] COG1116 ABC-type nitrate/sulfonate/bicarbonate transport system%2C ATPase component	gene	gene3279	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3296
CH54_3297	CH54_3297		CH54_3297	3604921	3605688	-	binding--dependent transport system inner membrane component family protein	[P] COG0600 ABC-type nitrate/sulfonate/bicarbonate transport system%2C permease component	gene	gene3280	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3297
CH54_3298	CH54_3298		CH54_3298	3606287	3607177	-	aldo/keto reductase family protein	[R] COG0656 Aldo/keto reductases%2C related to diketogulonate reductase	gene	gene3281	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3298
CH54_3299	CH54_3299		CH54_3299	3607247	3608134	+	bacterial regulatory helix-turn-helix%2C lysR family protein	[K] COG0583 Transcriptional regulator	gene	gene3282	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3299
CH54_33	CH54_33	csy3	csy3	33999	35003	+	CRISPR type I-F/YPEST-associated protein Csy3	cas_Csy3: CRISPR type I-F/YPEST-associated protein Csy3	gene	gene32	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_33
CH54_330	CH54_330		CH54_330	342901	344145	-	hypothetical protein	[S] COG4950 Uncharacterized protein conserved in bacteria	gene	gene328	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_330
CH54_3300	CH54_3300		CH54_3300	3608166	3609239	-	alpha/beta hydrolase family protein		gene	gene3283	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3300
CH54_3301	CH54_3301		CH54_3301	3609339	3609524	+	hypothetical protein		gene	gene3284	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3301
CH54_3302	CH54_3302		CH54_3302	3610166	3610381	+	hypothetical protein	conserved hypothetical protein~[S] COG3477 Predicted periplasmic/secreted protein	gene	gene3285	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3302
CH54_3303	CH54_3303		CH54_3303	3610588	3611607	-	bacterial regulatory s%2C lacI family protein	[K] COG1609 Transcriptional regulators	gene	gene3286	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3303
CH54_3304	CH54_3304		CH54_3304	3611900	3612964	+	glycosyl hydrolase 10 family protein		gene	gene3287	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3304
CH54_3305	CH54_3305	gph	gph	3613060	3614424	+	phosphoglycolate phosphatase	gph: sugar (Glycoside-Pentoside-Hexuronide) transporter domain protein~[G] COG2211 Na+/melibiose symporter and related transporters	gene	gene3288	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3305
CH54_3306	CH54_3306		CH54_3306	3614492	3614752	-	hypothetical protein	conserved hypothetical protein~[L] COG0582 Integrase	gene	gene3289	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3306
CH54_3307	CH54_3307		CH54_3307	3615240	3615527	-	helix-turn-helix family protein	[K] COG1396 Predicted transcriptional regulators	gene	gene3290	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3307
CH54_3308	CH54_3308		CH54_3308	3615514	3615837	-	hypothetical protein	conserved hypothetical protein~[S] COG4679 Phage-related protein	gene	gene3291	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3308
CH54_3309	CH54_3309		CH54_3309	3616037	3616903	-	methyltransferase domain protein		gene	gene3292	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3309
CH54_331	CH54_331		CH54_331	344571	345386	-	ABC transporter family protein	[V] COG4167 ABC-type antimicrobial peptide transport system%2C ATPase component	gene	gene329	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_331
CH54_3310	CH54_3310		CH54_3310	3616990	3617322	-	yagB/YeeU/YfjZ family protein		gene	gene3293	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3310
CH54_3311	CH54_3311		CH54_3311	3617328	3617693	-	hypothetical protein	conserved hypothetical protein	gene	gene3294	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3311
CH54_3312	CH54_3312		CH54_3312	3617749	3618081	-	hypothetical protein		gene	gene3295	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3312
CH54_3313	CH54_3313		CH54_3313	3618075	3618563	-	DNA repair RadC family protein	radc: DNA repair RadC family protein~[L] COG2003 DNA repair proteins	gene	gene3296	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3313
CH54_3314	CH54_3314		CH54_3314	3618581	3619012	-	antirestriction family protein		gene	gene3297	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3314
CH54_3315	CH54_3315		CH54_3315	3619354	3619551	-	hypothetical protein	[E] COG2040 Homocysteine/selenocysteine methylase (S-methylmethionine-dependent)	gene	gene3298	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3315
CH54_3316	CH54_3316		CH54_3316	3620822	3621322	+	hypothetical protein	conserved hypothetical protein~[S] COG3516 Uncharacterized protein conserved in bacteria	gene	gene3299	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3316
CH54_3317	CH54_3317		CH54_3317	3621367	3622914	+	hypothetical protein	conserved hypothetical protein~[S] COG3517 Uncharacterized protein conserved in bacteria	gene	gene3300	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3317
CH54_3318	CH54_3318		CH54_3318	3622926	3624263	+	hypothetical protein	conserved hypothetical protein~[S] COG3522 Uncharacterized protein conserved in bacteria	gene	gene3301	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3318
CH54_3319	CH54_3319		CH54_3319	3624260	3624913	+	type IV/VI secretion system%2C DotU family domain protein	IV_VI_DotU: type IV/VI secretion system%2C DotU family domain protein~[S] COG3455 Uncharacterized protein conserved in bacteria	gene	gene3302	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3319
CH54_332	CH54_332		CH54_332	345386	346378	-	hypothetical protein	oligo_HPY: oligopeptide/dipeptide ABC transporter%2C ATP-binding%2C C-terminal domain protein~[V] COG4170 ABC-type antimicrobial peptide transport system%2C ATPase component	gene	gene330	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_332
CH54_3320	CH54_3320		CH54_3320	3624917	3626629	+	ompA family protein	[M] COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)proteins	gene	gene3303	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3320
CH54_3321	CH54_3321		CH54_3321	3626645	3627136	+	type VI secretion system effector%2C Hcp1 family protein	VI_effect_Hcp1: type VI secretion system effector%2C Hcp1 family protein~[S] COG3157 Hemolysin-coregulated protein (uncharacterized)	gene	gene3304	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3321
CH54_3322	CH54_3322	clpV	clpV	3627318	3629957	+	type VI secretion ATPase%2C ClpV1 family	VI_ClpV1: type VI secretion ATPase%2C ClpV1 family~[O] COG0542 ATPases with chaperone activity%2C ATP-binding subunit	gene	gene3305	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3322
CH54_3323	CH54_3323		CH54_3323	3630052	3630507	+	hypothetical protein		gene	gene3306	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3323
CH54_3324	CH54_3324		CH54_3324	3630504	3630824	+	hypothetical protein	conserved hypothetical protein	gene	gene3307	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3324
CH54_3325	CH54_3325		CH54_3325	3630926	3633649	+	Rhs element Vgr family protein	vgr_GE: Rhs element Vgr family protein~[S] COG3501 Uncharacterized protein conserved in bacteria	gene	gene3308	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3325
CH54_3326	CH54_3326		CH54_3326	3633650	3634255	+	hypothetical protein	conserved hypothetical protein	gene	gene3309	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3326
CH54_3327	CH54_3327		CH54_3327	3634252	3634506	+	putative membrane protein		gene	gene3310	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3327
CH54_3328	CH54_3328		CH54_3328	3634561	3636477	+	lipase family protein	[I] COG3675 Predicted lipase	gene	gene3311	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3328
CH54_3329	CH54_3329		CH54_3329	3636474	3637238	+	putative lipoprotein		gene	gene3312	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3329
CH54_333	CH54_333		CH54_333	346393	347283	-	binding--dependent transport system inner membrane component family protein	[V] COG4171 ABC-type antimicrobial peptide transport system%2C permease component	gene	gene331	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_333
CH54_3330	CH54_3330		CH54_3330	3637795	3639717	+	lipase family protein	[I] COG3675 Predicted lipase	gene	gene3313	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3330
CH54_3331	CH54_3331		CH54_3331	3639701	3640447	+	putative lipoprotein		gene	gene3314	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3331
CH54_3332	CH54_3332		CH54_3332	3640576	3640842	+	PAAR motif family protein	[S] COG4104 Uncharacterized conserved protein	gene	gene3315	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3332
CH54_3333	CH54_3333		CH54_3333	3640846	3642021	+	hypothetical protein		gene	gene3316	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3333
CH54_3334	CH54_3334		CH54_3334	3642005	3645406	+	intracellular multiplication and macrophage-killing family protein	[S] COG3523 Uncharacterized protein conserved in bacteria	gene	gene3317	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3334
CH54_3335	CH54_3335		CH54_3335	3645406	3646992	+	hypothetical protein	impA-related N-terminal family protein~[S] COG3515 Uncharacterized protein conserved in bacteria	gene	gene3318	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3335
CH54_3336	CH54_3336		CH54_3336	3647024	3648787	+	hypothetical protein	conserved hypothetical protein~[S] COG3519 Uncharacterized protein conserved in bacteria	gene	gene3319	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3336
CH54_3337	CH54_3337		CH54_3337	3648751	3649848	+	hypothetical protein	conserved hypothetical protein~[S] COG3520 Uncharacterized protein conserved in bacteria	gene	gene3320	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3337
CH54_3338	CH54_3338		CH54_3338	3649823	3650365	+	type VI secretion lipofamily protein	[S] COG3521 Uncharacterized protein conserved in bacteria	gene	gene3321	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3338
CH54_3339	CH54_3339		CH54_3339	3650367	3650807	+	lysozyme family protein	[S] COG3518 Uncharacterized protein conserved in bacteria	gene	gene3322	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3339
CH54_334	CH54_334		CH54_334	347270	348235	-	binding--dependent transport system inner membrane component family protein	[V] COG4168 ABC-type antimicrobial peptide transport system%2C permease component	gene	gene332	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_334
CH54_3340	CH54_3340		CH54_3340	3650876	3651292	+	hypothetical protein		gene	gene3323	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3340
CH54_3341	CH54_3341		CH54_3341	3651412	3652812	+	hypothetical protein	impA-related N-terminal family protein~[S] COG3515 Uncharacterized protein conserved in bacteria	gene	gene3324	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3341
CH54_3342	CH54_3342		CH54_3342	3652910	3653560	+	myb-like DNA-binding domain protein		gene	gene3325	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3342
CH54_3343	CH54_3343		CH54_3343	3653917	3654600	+	putative lipoprotein		gene	gene3326	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3343
CH54_3344	CH54_3344		CH54_3344	3654781	3656322	+	hypothetical protein	uvrD/REP helicase N-terminal domain protein~[L] COG0210 Superfamily I DNA and RNA helicases	gene	gene3327	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3344
CH54_3345	CH54_3345		CH54_3345	3656855	3657802	+	TIR domain protein		gene	gene3328	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3345
CH54_3346	CH54_3346		CH54_3346	3658061	3659071	-	phage late control protein	[S] COG3501 Uncharacterized protein conserved in bacteria	gene	gene3329	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3346
CH54_3347	CH54_3347		CH54_3347	3659095	3659298	-	hypothetical protein		gene	gene3330	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3347
CH54_3348	CH54_3348		CH54_3348	3659971	3660531	+	putative lipoprotein		gene	gene3331	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3348
CH54_3349	CH54_3349		CH54_3349	3660565	3660810	-	hypothetical protein	conserved hypothetical protein~[L] COG0582 Integrase	gene	gene3332	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3349
CH54_335	CH54_335		CH54_335	348232	349971	-	bacterial extracellular solute-binding s%2C 5 Middle family protein	[E] COG4166 ABC-type oligopeptide transport system%2C periplasmic component	gene	gene333	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_335
CH54_3350	CH54_3350		CH54_3350	3661096	3661971	+	anion-transporting ATPase family protein	[D] COG1192 ATPases involved in chromosome partitioning	gene	gene3333	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3350
CH54_3351	CH54_3351	dnaB	dnaB	3661968	3663311	+	replicative DNA helicase	dnaB: replicative DNA helicase~[L] COG0305 Replicative DNA helicase	gene	gene3334	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3351
CH54_3352	CH54_3352		CH54_3352	3663301	3663990	+	arginine repressor%2C DNA binding domain protein		gene	gene3335	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3352
CH54_3353	CH54_3353		CH54_3353	3663994	3664746	-	integrase core domain protein	[L] COG2801 Transposase and inactivated derivatives	gene	gene3336	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3353
CH54_3354	CH54_3354		CH54_3354	3664857	3665168	-	transposase family protein	[L] COG2963 Transposase and inactivated derivatives	gene	gene3337	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3354
CH54_3355	CH54_3355		CH54_3355	3665470	3666432	+	phage integrase family protein	[L] COG0582 Integrase	gene	gene3338	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3355
CH54_3356	CH54_3356		CH54_3356	3666655	3666730	-	tRNA-Phe		tRNA	gene3339	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3356
CH54_3357	CH54_3357		CH54_3357	3667392	3669554	+	beta-eliminating lyase family protein	[E] COG1982 Arginine/lysine/ornithine decarboxylases	gene	gene3340	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3357
CH54_3358	CH54_3358		CH54_3358	3669616	3670365	-	sulfite exporter TauE/SafE family protein	[R] COG0730 Predicted permeases	gene	gene3341	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3358
CH54_3359	CH54_3359		CH54_3359	3670523	3671716	-	hypothetical protein	conserved hypothetical protein~[M] COG0741 Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains)	gene	gene3342	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3359
CH54_336	CH54_336		CH54_336	350507	351280	+	pertussis toxin%2C subunit 1 family protein		gene	gene334	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_336
CH54_3360	CH54_3360		CH54_3360	3671679	3671951	-	bacterial Fe(2+) trafficking family protein	[CO] COG2924 Fe-S cluster protector protein	gene	gene3343	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3360
CH54_3361	CH54_3361	mutY	mutY	3672015	3673091	-	A/G-specific adenine glycosylase	mutY: A/G-specific adenine glycosylase~[L] COG1194 A/G-specific DNA glycosylase	gene	gene3344	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3361
CH54_3362	CH54_3362	trmB	trmB	3673380	3674177	+	tRNA (guanine-N(7)-)-methyltransferase	[R] COG0220 Predicted S-adenosylmethionine-dependent methyltransferase	gene	gene3345	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3362
CH54_3363	CH54_3363		CH54_3363	3674177	3674503	+	hypothetical protein	conserved hypothetical protein~[S] COG3171 Uncharacterized protein conserved in bacteria	gene	gene3346	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3363
CH54_3364	CH54_3364	glsA	glsA	3674614	3675558	+	glutaminase A	gln_ase: glutaminase A~[E] COG2066 Glutaminase	gene	gene3347	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3364
CH54_3365	CH54_3365		CH54_3365	3675661	3676401	+	hypothetical protein	conserved hypothetical protein	gene	gene3348	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3365
CH54_3366	CH54_3366		CH54_3366	3676738	3677868	-	radical SAM superfamily protein	[H] COG0635 Coproporphyrinogen III oxidase and related Fe-S oxidoreductases	gene	gene3349	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3366
CH54_3367	CH54_3367	rdgB	rdgB	3677861	3678454	-	non-canonical purine NTP pyrophosphatase%2C RdgB/HAM1 family	[F] COG0127 Xanthosine triphosphate pyrophosphatase	gene	gene3350	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3367
CH54_3368	CH54_3368		CH54_3368	3678506	3678796	-	hypothetical protein	conserved hypothetical protein~[S] COG1872 Uncharacterized conserved protein	gene	gene3351	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3368
CH54_3369	CH54_3369		CH54_3369	3678793	3679347	-	YGGT family protein	[S] COG0762 Predicted integral membrane protein	gene	gene3352	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3369
CH54_337	CH54_337		CH54_337	351330	351686	+	hypothetical protein	conserved hypothetical protein	gene	gene335	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_337
CH54_3370	CH54_3370	proC	proC	3679476	3680297	-	pyrroline-5-carboxylate reductase	proC: pyrroline-5-carboxylate reductase~[E] COG0345 Pyrroline-5-carboxylate reductase	gene	gene3353	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3370
CH54_3371	CH54_3371		CH54_3371	3680540	3681235	-	hypothetical protein	alanine racemase%2C N-terminal domain protein~[R] COG0325 Predicted enzyme with a TIM-barrel fold	gene	gene3354	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3371
CH54_3372	CH54_3372		CH54_3372	3681255	3682394	+	twitching motility family protein	pilT_fam: twitching motility family protein~[NU] COG2805 Tfp pilus assembly protein%2C pilus retraction ATPase PilT	gene	gene3355	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3372
CH54_3373	CH54_3373	aguA	aguA	3682556	3683680	-	agmatine deiminase	agmatine_aguA: agmatine deiminase~[E] COG2957 Peptidylarginine deiminase and related enzymes	gene	gene3356	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3373
CH54_3374	CH54_3374	aguB	aguB	3683684	3684568	-	N-carbamoylputrescine amidase	agmatine_aguB: N-carbamoylputrescine amidase~[R] COG0388 Predicted amidohydrolase	gene	gene3357	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3374
CH54_3375	CH54_3375		CH54_3375	3684749	3685171	-	hypothetical protein	conserved hypothetical protein~[L] COG0816 Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis)	gene	gene3358	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3375
CH54_3376	CH54_3376		CH54_3376	3685171	3685677	-	hypothetical protein	conserved hypothetical protein~[K] COG1678 Putative transcriptional regulator	gene	gene3359	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3376
CH54_3377	CH54_3377	gshB	gshB	3685937	3686890	-	glutathione synthase	glut_syn: glutathione synthase~[HJ] COG0189 Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase)	gene	gene3360	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3377
CH54_3378	CH54_3378		CH54_3378	3686916	3687647	-	RNA methyltransferase%2C RsmE family protein	[S] COG1385 Uncharacterized protein conserved in bacteria	gene	gene3361	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3378
CH54_3379	CH54_3379		CH54_3379	3687693	3688400	-	endonuclease I family protein	[L] COG2356 Endonuclease I	gene	gene3362	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3379
CH54_338	CH54_338	pspF	pspF	351742	352761	-	psp operon transcriptional activator	phageshock_pspF: psp operon transcriptional activator~[KT] COG1221 Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain	gene	gene336	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_338
CH54_3380	CH54_3380		CH54_3380	3688490	3689008	-	sprT-like family protein	[S] COG3091 Uncharacterized protein conserved in bacteria	gene	gene3363	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3380
CH54_3381	CH54_3381		CH54_3381	3689135	3689464	+	bacterial regulatory%2C arsR family protein	[K] COG0640 Predicted transcriptional regulators	gene	gene3364	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3381
CH54_3382	CH54_3382		CH54_3382	3689461	3689892	+	sulfur transport family protein	[R] COG2391 Predicted transporter component	gene	gene3365	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3382
CH54_3383	CH54_3383		CH54_3383	3689909	3690328	+	sulfur transport family protein	[R] COG2391 Predicted transporter component	gene	gene3366	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3383
CH54_3384	CH54_3384		CH54_3384	3690442	3691635	+	transposase DDE domain protein		gene	gene3367	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3384
CH54_3385	CH54_3385	metK	metK	3691705	3692859	-	methionine adenosyltransferase	metK: methionine adenosyltransferase~[H] COG0192 S-adenosylmethionine synthetase	gene	gene3368	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3385
CH54_3386	CH54_3386	speA	speA	3693988	3695967	+	arginine decarboxylase	speA: arginine decarboxylase~[E] COG1166 Arginine decarboxylase (spermidine biosynthesis)	gene	gene3369	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3386
CH54_3387	CH54_3387		CH54_3387	3696102	3696416	+	rieske [2Fe-2S] domain protein	[PR] COG2146 Ferredoxin subunits of nitrite reductase and ring-hydroxylating dioxygenases	gene	gene3370	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3387
CH54_3388	CH54_3388		CH54_3388	3696474	3697226	-	peptidase M48 family protein	[O] COG0501 Zn-dependent protease with chaperone function	gene	gene3371	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3388
CH54_3389	CH54_3389	tkt	tkt	3697736	3699730	+	transketolase	tktlase_bact: transketolase~[G] COG0021 Transketolase	gene	gene3372	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3389
CH54_339	CH54_339	pspA	pspA	352990	353655	+	phage shock protein A	phageshock_pspA: phage shock protein A~[KT] COG1842 Phage shock protein A (IM30)%2C suppresses sigma54-dependent transcription	gene	gene337	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_339
CH54_3390	CH54_3390	epd	epd	3700070	3701086	+	erythrose-4-phosphate dehydrogenase	E4PD_g-proteo: erythrose-4-phosphate dehydrogenase~[G] COG0057 Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase	gene	gene3373	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3390
CH54_3391	CH54_3391		CH54_3391	3701189	3702352	+	phosphoglycerate kinase family protein	[G] COG0126 3-phosphoglycerate kinase	gene	gene3374	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3391
CH54_3392	CH54_3392	fbaA	fbaA	3702497	3703576	+	fructose-bisphosphate aldolase%2C class II	fruBisAldo_II_A: fructose-bisphosphate aldolase%2C class II~[G] COG0191 Fructose/tagatose bisphosphate aldolase	gene	gene3375	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3392
CH54_3393	CH54_3393		CH54_3393	3703832	3704032	-	hypothetical protein		gene	gene3376	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3393
CH54_3394	CH54_3394		CH54_3394	3704857	3705726	+	mechanosensitive ion channel family protein	[M] COG0668 Small-conductance mechanosensitive channel	gene	gene3377	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3394
CH54_3395	CH54_3395	lysE	lysE	3706018	3706635	+	L-lysine exporter family protein	2a75: L-lysine exporter family protein~[R] COG1279 Lysine efflux permease	gene	gene3378	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3395
CH54_3396	CH54_3396		CH54_3396	3706720	3707475	+	hypothetical protein	conserved hypothetical protein~[S] COG2968 Uncharacterized conserved protein	gene	gene3379	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3396
CH54_3397	CH54_3397	argP	argP	3707477	3708370	-	transcriptional regulator%2C ArgP family protein	argP: transcriptional regulator%2C ArgP family protein~[K] COG0583 Transcriptional regulator	gene	gene3380	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3397
CH54_3398	CH54_3398	rpiA	rpiA	3708591	3709253	+	ribose 5-phosphate isomerase A	rpiA: ribose 5-phosphate isomerase A~[G] COG0120 Ribose 5-phosphate isomerase	gene	gene3381	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3398
CH54_3399	CH54_3399		CH54_3399	3709566	3710807	+	ACT domain protein	[HE] COG0111 Phosphoglycerate dehydrogenase and related dehydrogenases	gene	gene3382	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3399
CH54_34	CH54_34	cas6f	cas6f	35013	35570	+	CRISPR-associated endoribonuclease Cas6/Csy4%2C subtype I-F/YPEST	cas_Csy4: CRISPR-associated endoribonuclease Cas6/Csy4%2C subtype I-F/YPEST	gene	gene33	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_34
CH54_340	CH54_340	pspB	pspB	353760	353987	+	phage shock protein B	phageshock_pspB: phage shock protein B	gene	gene338	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_340
CH54_3400	CH54_3400		CH54_3400	3710882	3711478	-	5-formyltetrahydrofolate cyclo-ligase	MTHFS_bact: 5-formyltetrahydrofolate cyclo-ligase~[H] COG0212 5-formyltetrahydrofolate cyclo-ligase	gene	gene3383	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3400
CH54_3401	CH54_3401		CH54_3401	3711799	3712128	-	cell division ZapA family protein	[S] COG3027 Uncharacterized protein conserved in bacteria	gene	gene3384	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3401
CH54_3402	CH54_3402		CH54_3402	3712321	3712899	+	yecA family protein	ygfB_yecA: yecA family protein~[S] COG3079 Uncharacterized protein conserved in bacteria	gene	gene3385	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3402
CH54_3403	CH54_3403		CH54_3403	3712954	3714267	+	hypothetical protein	aminopeptidase P%2C N-terminal domain protein~[E] COG0006 Xaa-Pro aminopeptidase	gene	gene3386	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3403
CH54_3404	CH54_3404	ubiH	ubiH	3714271	3715449	+	2-polyprenyl-6-methoxyphenol 4-hydroxylase	ubiH: 2-polyprenyl-6-methoxyphenol 4-hydroxylase~[HC] COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases	gene	gene3387	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3404
CH54_3405	CH54_3405		CH54_3405	3715499	3716713	+	ubiquinone biosynthesis hydroxylase%2C UbiH/UbiF/VisC/COQ6 family protein	ubi-OHases: ubiquinone biosynthesis hydroxylase%2C UbiH/UbiF/VisC/COQ6 family protein~[HC] COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases	gene	gene3388	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3405
CH54_3406	CH54_3406	gcvT	gcvT	3717216	3718313	+	glycine cleavage system T protein	gcvT: glycine cleavage system T protein~[E] COG0404 Glycine cleavage system T protein (aminomethyltransferase)	gene	gene3389	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3406
CH54_3407	CH54_3407	gcvH	gcvH	3718378	3718764	+	glycine cleavage system H protein	gcvH: glycine cleavage system H protein~[E] COG0509 Glycine cleavage system H protein (lipoate-binding)	gene	gene3390	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3407
CH54_3408	CH54_3408	gcvP	gcvP	3718965	3721844	+	glycine dehydrogenase	gcvP: glycine dehydrogenase~[E] COG1003 Glycine cleavage system protein P (pyridoxal-binding)%2C C-terminal domain	gene	gene3391	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3408
CH54_3409	CH54_3409		CH54_3409	3721971	3722720	+	short chain dehydrogenase family protein	[IQR] COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)	gene	gene3392	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3409
CH54_341	CH54_341	pspC	pspC	353987	354391	+	phage shock protein C	phageshock_pspC: phage shock protein C~[KT] COG1983 Putative stress-responsive transcriptional regulator	gene	gene339	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_341
CH54_3410	CH54_3410		CH54_3410	3722733	3723335	-	HD domain protein	[R] COG1896 Predicted hydrolases of HD superfamily	gene	gene3393	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3410
CH54_3411	CH54_3411		CH54_3411	3723590	3724273	+	channel%2C hemolysin III family protein	hlyIII: channel%2C hemolysin III family protein~[R] COG1272 Predicted membrane protein%2C hemolysin III homolog	gene	gene3394	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3411
CH54_3412	CH54_3412		CH54_3412	3724322	3725314	-	aminomethyltransferase folate-binding domain protein	[R] COG0354 Predicted aminomethyltransferase related to GcvT	gene	gene3395	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3412
CH54_3413	CH54_3413		CH54_3413	3725580	3725846	+	flavinator of succinate dehydrogenase family protein	[S] COG2938 Uncharacterized conserved protein	gene	gene3396	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3413
CH54_3414	CH54_3414		CH54_3414	3725827	3726252	+	hypothetical protein	conserved hypothetical protein	gene	gene3397	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3414
CH54_3415	CH54_3415		CH54_3415	3726252	3726950	+	hypothetical protein	transcriptional regulatory%2C C terminal family protein~[TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain	gene	gene3398	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3415
CH54_3416	CH54_3416		CH54_3416	3726961	3728388	+	HAMP domain protein	[T] COG0642 Signal transduction histidine kinase	gene	gene3399	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3416
CH54_3417	CH54_3417		CH54_3417	3728481	3729902	+	inner membrane CreD family protein	[V] COG4452 Inner membrane protein involved in colicin E2 resistance	gene	gene3400	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3417
CH54_3418	CH54_3418		CH54_3418	3729976	3730512	-	flavodoxin	flav_long: flavodoxin~[C] COG0716 Flavodoxins	gene	gene3401	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3418
CH54_3419	CH54_3419	xerD	xerD	3730600	3731499	+	tyrosine recombinase XerD	recomb_XerD: tyrosine recombinase XerD~[L] COG4974 Site-specific recombinase XerD	gene	gene3402	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3419
CH54_342	CH54_342		CH54_342	354437	354676	+	phage shock PspD family protein		gene	gene340	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_342
CH54_3420	CH54_3420		CH54_3420	3731549	3732265	+	DSBA-like thioredoxin domain protein	[O] COG1651 Protein-disulfide isomerase	gene	gene3403	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3420
CH54_3421	CH54_3421	recJ	recJ	3732272	3734005	+	single-stranded-DNA-specific exonuclease RecJ	recJ: single-stranded-DNA-specific exonuclease RecJ~[L] COG0608 Single-stranded DNA-specific exonuclease	gene	gene3404	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3421
CH54_3422	CH54_3422	prfB	prfB	3734484	3735353	+	peptide chain release factor 2	prfB: peptide chain release factor 2~[J] COG1186 Protein chain release factor B	gene	gene3405	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3422
CH54_3423	CH54_3423	lysS	lysS	3735376	3736893	+	lysine--tRNA ligase	lysS_bact: lysine--tRNA ligase~[J] COG1190 Lysyl-tRNA synthetase (class II)	gene	gene3406	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3423
CH54_3424	CH54_3424		CH54_3424	3737065	3737138	+	tRNA-Gly		tRNA	gene3407	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3424
CH54_3425	CH54_3425		CH54_3425	3737910	3738464	-	hypothetical protein	resolvase%2C N terminal domain protein~[L] COG1961 Site-specific recombinases%2C DNA invertase Pin homologs	gene	gene3408	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3425
CH54_3426	CH54_3426		CH54_3426	3739246	3739407	+	putative membrane protein		gene	gene3409	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3426
CH54_3427	CH54_3427		CH54_3427	3739483	3739749	+	hypothetical protein		gene	gene3410	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3427
CH54_3428	CH54_3428		CH54_3428	3740044	3740355	+	transposase family protein	[L] COG2963 Transposase and inactivated derivatives	gene	gene3411	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3428
CH54_3429	CH54_3429		CH54_3429	3740466	3741218	+	integrase core domain protein	[L] COG2801 Transposase and inactivated derivatives	gene	gene3412	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3429
CH54_343	CH54_343		CH54_343	354657	356054	+	hypothetical protein	conserved hypothetical protein~[R] COG3106 Predicted ATPase	gene	gene341	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_343
CH54_3430	CH54_3430		CH54_3430	3741240	3742331	-	hypothetical protein	conserved hypothetical protein	gene	gene3413	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3430
CH54_3431	CH54_3431		CH54_3431	3742312	3742719	-	hypothetical protein	conserved hypothetical protein	gene	gene3414	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3431
CH54_3432	CH54_3432		CH54_3432	3742935	3743120	-	hypothetical protein		gene	gene3415	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3432
CH54_3433	CH54_3433		CH54_3433	3743720	3743980	+	plasmid stabilization system family protein	[JD] COG2026 Cytotoxic translational repressor of toxin-antitoxin stability system	gene	gene3416	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3433
CH54_3434	CH54_3434		CH54_3434	3744043	3744405	+	helix-turn-helix family protein	[K] COG1396 Predicted transcriptional regulators	gene	gene3417	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3434
CH54_3435	CH54_3435		CH54_3435	3744623	3745537	+	hypothetical protein		gene	gene3418	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3435
CH54_3436	CH54_3436		CH54_3436	3745527	3746369	+	hypothetical protein		gene	gene3419	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3436
CH54_3437	CH54_3437		CH54_3437	3746393	3746815	+	hypothetical protein		gene	gene3420	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3437
CH54_3438	CH54_3438		CH54_3438	3747200	3749494	-	zinc-binding domain of primase-helicase family protein	[S] COG4643 Uncharacterized protein conserved in bacteria	gene	gene3421	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3438
CH54_3439	CH54_3439		CH54_3439	3749602	3750279	-	hypothetical protein		gene	gene3422	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3439
CH54_344	CH54_344		CH54_344	356051	357112	+	hypothetical protein	conserved hypothetical protein~[S] COG3768 Predicted membrane protein	gene	gene342	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_344
CH54_3440	CH54_3440		CH54_3440	3750276	3750476	-	prophage CP4-57 regulatory family protein	[K] COG3311 Predicted transcriptional regulator	gene	gene3423	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3440
CH54_3441	CH54_3441		CH54_3441	3750691	3751371	-	hypothetical protein	conserved hypothetical protein	gene	gene3424	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3441
CH54_3442	CH54_3442		CH54_3442	3751384	3751749	-	hypothetical protein	conserved hypothetical protein	gene	gene3425	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3442
CH54_3443	CH54_3443		CH54_3443	3752018	3753160	+	fic/DOC family protein	[S] COG3177 Uncharacterized conserved protein	gene	gene3426	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3443
CH54_3444	CH54_3444		CH54_3444	3753611	3754081	-	asnC-type helix-turn-helix domain protein	[K] COG1522 Transcriptional regulators	gene	gene3427	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3444
CH54_3445	CH54_3445		CH54_3445	3754208	3754630	+	hypothetical protein	conserved hypothetical protein	gene	gene3428	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3445
CH54_3446	CH54_3446		CH54_3446	3754713	3757088	-	glycosyl hydrolases 31 family protein	[G] COG1501 Alpha-glucosidases%2C family 31 of glycosyl hydrolases	gene	gene3429	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3446
CH54_3447	CH54_3447		CH54_3447	3757117	3758424	-	major Facilitator Superfamily protein	[GEPR] COG0477 Permeases of the major facilitator superfamily	gene	gene3430	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3447
CH54_3448	CH54_3448		CH54_3448	3758835	3759917	+	bacterial regulatory s%2C lacI family protein	[K] COG1609 Transcriptional regulators	gene	gene3431	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3448
CH54_3449	CH54_3449		CH54_3449	3760111	3761067	+	dnaJ domain protein	[O] COG2214 DnaJ-class molecular chaperone	gene	gene3432	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3449
CH54_345	CH54_345		CH54_345	357119	357577	-	RES domain protein	[S] COG5654 Uncharacterized conserved protein	gene	gene343	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_345
CH54_3450	CH54_3450		CH54_3450	3761074	3761379	+	merR HTH regulatory family protein		gene	gene3433	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3450
CH54_3451	CH54_3451		CH54_3451	3761619	3762368	-	short chain dehydrogenase family protein	[IQR] COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)	gene	gene3434	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3451
CH54_3452	CH54_3452		CH54_3452	3762471	3762854	+	hxlR-like helix-turn-helix family protein	[K] COG1733 Predicted transcriptional regulators	gene	gene3435	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3452
CH54_3453	CH54_3453		CH54_3453	3763018	3763773	+	Tat (twin-arginine translocation) pathway signal sequence domain protein	TAT_signal_seq: Tat (twin-arginine translocation) pathway signal sequence domain protein~[P] COG0288 Carbonic anhydrase	gene	gene3436	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3453
CH54_3454	CH54_3454		CH54_3454	3764464	3764880	+	hypothetical protein		gene	gene3437	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3454
CH54_3455	CH54_3455		CH54_3455	3764931	3765428	+	type IV pilus biogenesis family protein		gene	gene3438	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3455
CH54_3456	CH54_3456	gspD	gspD	3765464	3767437	+	type II secretion system protein D	type_II_gspD: type II secretion system protein D~[NU] COG1450 Type II secretory pathway%2C component PulD	gene	gene3439	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3456
CH54_3457	CH54_3457	gspE	gspE	3767434	3768939	+	type II secretion system protein E	type_II_gspE: type II secretion system protein E~[NU] COG2804 Type II secretory pathway%2C ATPase PulE/Tfp pilus assembly pathway%2C ATPase PilB	gene	gene3440	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3457
CH54_3458	CH54_3458		CH54_3458	3768926	3770134	+	type II secretion system (T2SS)%2C F family protein	[NU] COG1459 Type II secretory pathway%2C component PulF	gene	gene3441	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3458
CH54_3459	CH54_3459	gspG	gspG	3770154	3770606	+	type II secretion system protein G	typeII_sec_gspG: type II secretion system protein G~[NU] COG2165 Type II secretory pathway%2C pseudopilin PulG	gene	gene3442	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3459
CH54_346	CH54_346		CH54_346	357663	358109	-	hypothetical protein	conserved hypothetical protein~[S] COG5642 Uncharacterized conserved protein	gene	gene344	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_346
CH54_3460	CH54_3460	gspI	gspI	3770641	3771003	+	type II secretion system protein I	gspI: type II secretion system protein I~[NU] COG2165 Type II secretory pathway%2C pseudopilin PulG	gene	gene3443	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3460
CH54_3461	CH54_3461	gspJ	gspJ	3770996	3771589	+	type II secretion system protein J	gspJ: type II secretion system protein J~[U] COG4795 Type II secretory pathway%2C component PulJ	gene	gene3444	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3461
CH54_3462	CH54_3462		CH54_3462	3771604	3772617	+	type II secretion system (T2SS)%2C K family protein	[U] COG3156 Type II secretory pathway%2C component PulK	gene	gene3445	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3462
CH54_3463	CH54_3463		CH54_3463	3772568	3773758	+	type II secretion system (T2SS)%2C L family protein	[U] COG3297 Type II secretory pathway%2C component PulL	gene	gene3446	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3463
CH54_3464	CH54_3464		CH54_3464	3773755	3774219	+	hypothetical protein		gene	gene3447	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3464
CH54_3465	CH54_3465		CH54_3465	3775050	3775418	-	bacterial chaperone lipo family protein		gene	gene3449	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3465
CH54_3466	CH54_3466		CH54_3466	3774239	3775069	+	type IV leader peptidase family protein	[NOU] COG1989 Type II secretory pathway%2C prepilin signal peptidase PulO and related peptidases	gene	gene3448	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3466
CH54_3467	CH54_3467		CH54_3467	3775680	3776339	+	hypothetical protein	transcriptional regulatory%2C C terminal family protein~[K] COG3710 DNA-binding winged-HTH domains	gene	gene3450	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3467
CH54_3468	CH54_3468		CH54_3468	3776324	3776800	+	hypothetical protein	conserved hypothetical protein	gene	gene3451	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3468
CH54_3469	CH54_3469		CH54_3469	3776924	3777419	+		methyl-accepting chemotaxis (MCP) signaling domain protein	pseudogene	gene3452	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3469
CH54_347	CH54_347		CH54_347	358429	360006	+	TyrR family helix-turn-helix domain protein	HTH_TypR: TyrR family helix-turn-helix domain protein~[KE] COG3283 Transcriptional regulator of aromatic amino acids metabolism	gene	gene345	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_347
CH54_3471	CH54_3471		CH54_3471	3777494	3778138	-	DSBA-like thioredoxin domain protein	[O] COG3531 Predicted protein-disulfide isomerase	gene	gene3453	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3471
CH54_3472	CH54_3472		CH54_3472	3778202	3779095	-	metallo-beta-lactamase superfamily protein	[R] COG0491 Zn-dependent hydrolases%2C including glyoxylases	gene	gene3454	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3472
CH54_3473	CH54_3473		CH54_3473	3779197	3780093	+	bacterial regulatory helix-turn-helix%2C lysR family protein	[K] COG0583 Transcriptional regulator	gene	gene3455	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3473
CH54_3474	CH54_3474		CH54_3474	3780486	3781646	+	sugar (and other) transporter family protein	[G] COG2814 Arabinose efflux permease	gene	gene3456	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3474
CH54_3475	CH54_3475		CH54_3475	3781655	3782596	-	bacterial regulatory helix-turn-helix%2C lysR family protein	[K] COG0583 Transcriptional regulator	gene	gene3457	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3475
CH54_3476	CH54_3476	lysA	lysA	3782764	3784026	+	diaminopimelate decarboxylase	lysA: diaminopimelate decarboxylase~[E] COG0019 Diaminopimelate decarboxylase	gene	gene3458	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3476
CH54_3477	CH54_3477		CH54_3477	3784045	3785076	-	bacterial regulatory s%2C lacI family protein	[K] COG1609 Transcriptional regulators	gene	gene3459	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3477
CH54_3478	CH54_3478		CH54_3478	3785367	3787661	+	molybdopterin oxidoreductase family protein	[C] COG0243 Anaerobic dehydrogenases%2C typically selenocysteine-containing	gene	gene3460	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3478
CH54_3479	CH54_3479		CH54_3479	3787994	3790150	+	acyltransferase family protein	[IQ] COG0318 Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II	gene	gene3461	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3479
CH54_348	CH54_348		CH54_348	360167	360670	-	ahpC/TSA family protein	[O] COG2077 Peroxiredoxin	gene	gene346	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_348
CH54_3480	CH54_3480		CH54_3480	3790147	3791358	+	major Facilitator Superfamily protein	[GEPR] COG0477 Permeases of the major facilitator superfamily	gene	gene3462	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3480
CH54_3481	CH54_3481		CH54_3481	3791526	3792566	-	aldo/keto reductase family protein	[C] COG0667 Predicted oxidoreductases (related to aryl-alcohol dehydrogenases)	gene	gene3463	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3481
CH54_3482	CH54_3482		CH54_3482	3792717	3793433	-	integral membrane TerC family protein	[P] COG0861 Membrane protein TerC%2C possibly involved in tellurium resistance	gene	gene3464	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3482
CH54_3483	CH54_3483	mutH	mutH	3793733	3794419	-	DNA mismatch repair endonuclease MutH	mutH_TIGR: DNA mismatch repair endonuclease MutH~[L] COG3066 DNA mismatch repair protein	gene	gene3465	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3483
CH54_3484	CH54_3484		CH54_3484	3795117	3795644	+	NUDIX domain protein	[LR] COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes	gene	gene3466	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3484
CH54_3485	CH54_3485	ptsP	ptsP	3795696	3797903	+	phosphoenolpyruvate-protein phosphotransferase	PTS_I_fam: phosphoenolpyruvate-protein phosphotransferase~[T] COG3605 Signal transduction protein containing GAF and PtsI domains	gene	gene3467	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3485
CH54_3486	CH54_3486	lgt	lgt	3798079	3798951	+	prolipoprotein diacylglyceryl transferase	lgt: prolipoprotein diacylglyceryl transferase~[M] COG0682 Prolipoprotein diacylglyceryltransferase	gene	gene3468	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3486
CH54_3487	CH54_3487	thyA	thyA	3798958	3799752	+	thymidylate synthase	thym_sym: thymidylate synthase~[F] COG0207 Thymidylate synthase	gene	gene3469	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3487
CH54_3488	CH54_3488		CH54_3488	3800015	3800512	+	hypothetical protein	IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain protein~[NU] COG2165 Type II secretory pathway%2C pseudopilin PulG	gene	gene3470	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3488
CH54_3489	CH54_3489		CH54_3489	3800506	3801132	+	hypothetical protein	IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain protein~[U] COG4795 Type II secretory pathway%2C component PulJ	gene	gene3471	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3489
CH54_349	CH54_349		CH54_349	361790	362497	-	zinc carboxypeptidase family protein	[E] COG2866 Predicted carboxypeptidase	gene	gene348	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_349
CH54_3490	CH54_3490		CH54_3490	3801129	3801596	+	hypothetical protein	conserved hypothetical protein	gene	gene3472	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3490
CH54_3491	CH54_3491		CH54_3491	3801587	3801985	+	hypothetical protein	conserved hypothetical protein~[NU] COG4967 Tfp pilus assembly protein PilV	gene	gene3473	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3491
CH54_3492	CH54_3492	recC	recC	3802136	3805522	+	exodeoxyribonuclease V%2C gamma subunit	recC: exodeoxyribonuclease V%2C gamma subunit~[L] COG1330 Exonuclease V gamma subunit	gene	gene3474	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3492
CH54_3493	CH54_3493		CH54_3493	3805621	3808512	+	insulinase family protein	[O] COG1025 Secreted/periplasmic Zn-dependent peptidases%2C insulinase-like	gene	gene3475	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3493
CH54_3494	CH54_3494	recB	recB	3808509	3812138	+	exodeoxyribonuclease V%2C beta subunit	recB: exodeoxyribonuclease V%2C beta subunit~[L] COG1074 ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains)	gene	gene3476	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3494
CH54_3495	CH54_3495	recD	recD	3812135	3814036	+	exodeoxyribonuclease V%2C alpha subunit	recD: exodeoxyribonuclease V%2C alpha subunit~[L] COG0507 ATP-dependent exoDNAse (exonuclease V)%2C alpha subunit - helicase superfamily I member	gene	gene3477	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3495
CH54_3496	CH54_3496	argA	argA	3814067	3815392	-	amino-acid N-acetyltransferase	N-Ac-Glu-synth: amino-acid N-acetyltransferase~[E] COG0548 Acetylglutamate kinase	gene	gene3478	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3496
CH54_3497	CH54_3497		CH54_3497	3815627	3816877	+	N-acetylmuramoyl-L-alanine amidase family protein	[M] COG0860 N-acetylmuramoyl-L-alanine amidase	gene	gene3479	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3497
CH54_3498	CH54_3498		CH54_3498	3817165	3817241	-	tRNA-Met		tRNA	gene3480	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3498
CH54_3499	CH54_3499		CH54_3499	3817281	3817357	-	tRNA-Met		tRNA	gene3481	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3499
CH54_35	CH54_35		CH54_35	37813	38619	-	hypothetical protein		gene	gene34	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_35
CH54_350	CH54_350		CH54_350	360822	361793	+	hypothetical protein	mandelate racemase / muconate lactonizing enzyme%2C N-terminal domain protein~[MR] COG4948 L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily	gene	gene347	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_350
CH54_3500	CH54_3500		CH54_3500	3817468	3817544	-	tRNA-Met		tRNA	gene3482	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3500
CH54_3501	CH54_3501		CH54_3501	3817779	3818951	+	mltA specific insert domain protein	[M] COG2821 Membrane-bound lytic murein transglycosylase	gene	gene3483	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3501
CH54_3502	CH54_3502	csdE	csdE	3819878	3820315	-	cysteine desulfurase%2C sulfur acceptor subunit CsdE	feS_syn_CsdE: cysteine desulfurase%2C sulfur acceptor subunit CsdE~[R] COG2166 SufE protein probably involved in Fe-S center assembly	gene	gene3485	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3502
CH54_3503	CH54_3503		CH54_3503	3819065	3819883	+	thiF family protein	[H] COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1	gene	gene3484	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3503
CH54_3504	CH54_3504	csdA	csdA	3820357	3821562	-	cysteine desulfurase%2C catalytic subunit CsdA	feS_syn_CsdA: cysteine desulfurase%2C catalytic subunit CsdA~[E] COG0520 Selenocysteine lyase	gene	gene3486	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3504
CH54_3505	CH54_3505		CH54_3505	3821745	3821966	+	hypothetical protein	conserved hypothetical protein	gene	gene3487	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3505
CH54_3506	CH54_3506		CH54_3506	3822461	3823378	+	bacterial regulatory helix-turn-helix%2C lysR family protein	[K] COG0583 Transcriptional regulator	gene	gene3488	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3506
CH54_3507	CH54_3507		CH54_3507	3823421	3823816	+	hypothetical protein	conserved hypothetical protein~[S] COG2363 Uncharacterized small membrane protein	gene	gene3489	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3507
CH54_3508	CH54_3508		CH54_3508	3823809	3824915	+	ftsJ-like methyltransferase family protein	[R] COG2933 Predicted SAM-dependent methyltransferase	gene	gene3490	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3508
CH54_3509	CH54_3509		CH54_3509	3824984	3825739	-	hypothetical protein	5'-3' exonuclease%2C C-terminal SAM fold family protein~[L] COG0258 5'-3' exonuclease (including N-terminal domain of PolI)	gene	gene3491	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3509
CH54_351	CH54_351		CH54_351	362781	364397	+	bacterial extracellular solute-binding s%2C 5 Middle family protein	[E] COG4166 ABC-type oligopeptide transport system%2C periplasmic component	gene	gene349	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_351
CH54_3510	CH54_3510		CH54_3510	3825884	3827248	-	hypothetical protein	conserved hypothetical protein~[R] COG1611 Predicted Rossmann fold nucleotide-binding protein	gene	gene3492	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3510
CH54_3511	CH54_3511	queF	queF	3827460	3828305	-	queuine synthase	queF: queuine synthase~[R] COG0780 Enzyme related to GTP cyclohydrolase I	gene	gene3493	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3511
CH54_3512	CH54_3512		CH54_3512	3828355	3828987	+	syd family protein		gene	gene3494	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3512
CH54_3513	CH54_3513		CH54_3513	3829660	3829992	+	tRNA pseudouridine synthase C family protein	[S] COG3098 Uncharacterized protein conserved in bacteria	gene	gene3495	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3513
CH54_3514	CH54_3514		CH54_3514	3829992	3830765	+	RNA pseudouridylate synthase family protein	[J] COG0564 Pseudouridylate synthases%2C 23S RNA-specific	gene	gene3496	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3514
CH54_3515	CH54_3515		CH54_3515	3830794	3831243	+	flavodoxin family protein	[C] COG0716 Flavodoxins	gene	gene3497	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3515
CH54_3516	CH54_3516		CH54_3516	3831413	3831802	-	hypothetical protein	conserved hypothetical protein	gene	gene3498	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3516
CH54_3517	CH54_3517	dapD	dapD	3831994	3832818	-	2%2C3%2C4%2C5-tetrahydropyridine-2%2C6-dicarboxylate N-succinyltransferase	dapD: 2%2C3%2C4%2C5-tetrahydropyridine-2%2C6-dicarboxylate N-succinyltransferase~[E] COG2171 Tetrahydrodipicolinate N-succinyltransferase	gene	gene3499	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3517
CH54_3518	CH54_3518	glnD	glnD	3832869	3835547	-	protein-P-II uridylyltransferase	UTase_glnD: protein-P-II uridylyltransferase~[O] COG2844 UTP:GlnB (protein PII) uridylyltransferase	gene	gene3500	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3518
CH54_3519	CH54_3519	map	map	3835610	3836401	-	methionine aminopeptidase%2C type I	met_pdase_I: methionine aminopeptidase%2C type I~[J] COG0024 Methionine aminopeptidase	gene	gene3501	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3519
CH54_352	CH54_352		CH54_352	364857	365123	-	hypothetical protein	conserved hypothetical protein	gene	gene350	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_352
CH54_3520	CH54_3520	rpsB	rpsB	3836848	3837573	+	ribosomal protein S2	rpsB_bact: ribosomal protein S2~[J] COG0052 Ribosomal protein S2	gene	gene3502	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3520
CH54_3521	CH54_3521	tsf	tsf	3837702	3838559	+	translation elongation factor Ts	tsf: translation elongation factor Ts~[J] COG0264 Translation elongation factor Ts	gene	gene3503	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3521
CH54_3522	CH54_3522	pyrH	pyrH	3838826	3839572	+	UMP kinase	pyrH_bact: UMP kinase~[F] COG0528 Uridylate kinase	gene	gene3504	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3522
CH54_3523	CH54_3523	frr	frr	3839689	3840246	+	ribosome recycling factor	frr: ribosome recycling factor~[J] COG0233 Ribosome recycling factor	gene	gene3505	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3523
CH54_3524	CH54_3524	dxr	dxr	3840485	3841681	+	1-deoxy-D-xylulose 5-phosphate reductoisomerase	dxr: 1-deoxy-D-xylulose 5-phosphate reductoisomerase~[I] COG0743 1-deoxy-D-xylulose 5-phosphate reductoisomerase	gene	gene3506	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3524
CH54_3525	CH54_3525	uppS	uppS	3841907	3842665	+	di-trans%2Cpoly-cis-decaprenylcistransferase	uppS: di-trans%2Cpoly-cis-decaprenylcistransferase~[I] COG0020 Undecaprenyl pyrophosphate synthase	gene	gene3507	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3525
CH54_3526	CH54_3526		CH54_3526	3842675	3843523	+	cytidylyltransferase family protein	[I] COG0575 CDP-diglyceride synthetase	gene	gene3508	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3526
CH54_3527	CH54_3527	rseP	rseP	3843552	3844907	+	RIP metalloprotease RseP	[M] COG0750 Predicted membrane-associated Zn-dependent proteases 1	gene	gene3509	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3527
CH54_3528	CH54_3528	yaeT	yaeT	3844944	3847331	+	outer membrane assembly complex%2C YaeT protein	OM_YaeT: outer membrane assembly complex%2C YaeT protein~[M] COG4775 Outer membrane protein/protective antigen OMA87	gene	gene3510	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3528
CH54_3529	CH54_3529		CH54_3529	3847506	3848003	+	outer membrane family protein	[M] COG2825 Outer membrane protein	gene	gene3511	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3529
CH54_353	CH54_353		CH54_353	365338	366321	+	corA-like Mg2+ transporter family protein	[P] COG0598 Mg2+ and Co2+ transporters	gene	gene351	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_353
CH54_3530	CH54_3530	lpxD	lpxD	3848007	3849029	+	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase LpxD	lipid_A_lpxD: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase LpxD~[M] COG1044 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase	gene	gene3512	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3530
CH54_3531	CH54_3531	fabZ	fabZ	3849192	3849698	+	beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ	fabZ: beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ~[I] COG0764 3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier protein) dehydratases	gene	gene3513	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3531
CH54_3532	CH54_3532	lpxA	lpxA	3849702	3850490	+	acyl-[acyl-carrier-protein]-UDP-N-acetylglucosamine O-acyltransferase	lipid_A_lpxA: acyl-[acyl-carrier-protein]-UDP-N-acetylglucosamine O-acyltransferase~[M] COG1043 Acyl-[acyl carrier protein]--UDP-N-acetylglucosamine O-acyltransferase	gene	gene3514	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3532
CH54_3533	CH54_3533	lpxB	lpxB	3850494	3851678	+	lipid-A-disaccharide synthase	lpxB: lipid-A-disaccharide synthase~[M] COG0763 Lipid A disaccharide synthetase	gene	gene3515	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3533
CH54_3534	CH54_3534		CH54_3534	3851675	3852271	+	ribonuclease HII family protein	[L] COG0164 Ribonuclease HII	gene	gene3516	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3534
CH54_3535	CH54_3535	dnaE	dnaE	3852350	3855865	+	DNA polymerase III%2C alpha subunit	polc: DNA polymerase III%2C alpha subunit~[L] COG0587 DNA polymerase III%2C alpha subunit	gene	gene3517	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3535
CH54_3536	CH54_3536	accA	accA	3855878	3856837	+	acetyl-CoA carboxylase%2C carboxyl transferase%2C alpha subunit	accA: acetyl-CoA carboxylase%2C carboxyl transferase%2C alpha subunit~[I] COG0825 Acetyl-CoA carboxylase alpha subunit	gene	gene3518	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3536
CH54_3537	CH54_3537		CH54_3537	3856900	3857157	-	hypothetical protein	conserved hypothetical protein	gene	gene3519	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3537
CH54_3538	CH54_3538		CH54_3538	3857290	3857973	-	putative hydrolase/acyltransferase		gene	gene3520	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3538
CH54_3539	CH54_3539		CH54_3539	3858036	3858194	-	hypothetical protein		gene	gene3521	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3539
CH54_354	CH54_354		CH54_354	366640	367581	-	PP-loop family protein	[D] COG0037 Predicted ATPase of the PP-loop superfamily implicated in cell cycle control	gene	gene352	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_354
CH54_3540	CH54_3540		CH54_3540	3858449	3858847	+	glyoxalase/Bleomycin resistance /Dioxygenase superfamily protein	[E] COG0346 Lactoylglutathione lyase and related lyases	gene	gene3522	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3540
CH54_3541	CH54_3541	tilS	tilS	3858849	3860234	+	tRNA(Ile)-lysidine synthetase	lysidine_TilS_N: tRNA(Ile)-lysidine synthetase~[D] COG0037 Predicted ATPase of the PP-loop superfamily implicated in cell cycle control	gene	gene3523	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3541
CH54_3542	CH54_3542		CH54_3542	3860260	3860571	+	cytochrome c family protein	[C] COG2863 Cytochrome c553	gene	gene3524	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3542
CH54_3543	CH54_3543		CH54_3543	3860633	3860893	-	hypothetical protein	modulator of Rho-dependent transcription termination family protein~[K] COG4568 Transcriptional antiterminator	gene	gene3525	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3543
CH54_3544	CH54_3544		CH54_3544	3860880	3861080	-	hypothetical protein	conserved hypothetical protein	gene	gene3526	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3544
CH54_3545	CH54_3545		CH54_3545	3861318	3861866	+	yaeQ family protein	[S] COG4681 Uncharacterized protein conserved in bacteria	gene	gene3527	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3545
CH54_3546	CH54_3546		CH54_3546	3861845	3862285	+	RF-1 domain protein	[J] COG1186 Protein chain release factor B	gene	gene3528	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3546
CH54_3547	CH54_3547		CH54_3547	3862359	3863042	+	hypothetical protein	nlpE N-terminal domain protein~[MP] COG3015 Uncharacterized lipoprotein NlpE involved in copper resistance	gene	gene3529	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3547
CH54_3548	CH54_3548	proS	proS	3863116	3864834	-	proline--tRNA ligase	proS_fam_II: proline--tRNA ligase~[J] COG0442 Prolyl-tRNA synthetase	gene	gene3530	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3548
CH54_3549	CH54_3549	tsaA	tsaA	3864942	3865649	-	tRNA-Thr(GGU) m(6)t(6)A37 methyltransferase TsaA	tRNA_TsaA: tRNA-Thr(GGU) m(6)t(6)A37 methyltransferase TsaA~[S] COG1720 Uncharacterized conserved protein	gene	gene3531	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3549
CH54_355	CH54_355		CH54_355	367906	368763	-	phosphatidylinositol-specific phospholipase C%2C X domain protein		gene	gene353	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_355
CH54_3550	CH54_3550		CH54_3550	3865646	3866053	-	putative lipoprotein		gene	gene3532	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3550
CH54_3551	CH54_3551		CH54_3551	3866216	3867031	-	lipo%2C YaeC family protein	[P] COG1464 ABC-type metal ion transport system%2C periplasmic component/surface antigen	gene	gene3533	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3551
CH54_3552	CH54_3552		CH54_3552	3867226	3867879	-	binding--dependent transport system inner membrane component family protein	[P] COG2011 ABC-type metal ion transport system%2C permease component	gene	gene3534	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3552
CH54_3553	CH54_3553	metN	metN	3867872	3868903	-	D-methionine ABC transporter%2C ATP-binding protein	ABC_MetN: D-methionine ABC transporter%2C ATP-binding protein~[P] COG1135 ABC-type metal ion transport system%2C ATPase component	gene	gene3535	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3553
CH54_3554	CH54_3554	gmhB	gmhB	3869091	3869657	+	D%2CD-heptose 1%2C7-bisphosphate phosphatase family protein	gmhB_yaeD: D%2CD-heptose 1%2C7-bisphosphate phosphatase family protein~[E] COG0241 Histidinol phosphatase and related phosphatases	gene	gene3536	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3554
CH54_3555	CH54_3555		CH54_3555	3870110	3871639	+	16S ribosomal RNA		rRNA	gene3537	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3555
CH54_3556	CH54_3556		CH54_3556	3871747	3871823	+	tRNA-Ile		tRNA	gene3538	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3556
CH54_3557	CH54_3557		CH54_3557	3871934	3872009	+	tRNA-Ala		tRNA	gene3539	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3557
CH54_3558	CH54_3558		CH54_3558	3872220	3875123	+	23S ribosomal RNA		rRNA	gene3540	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3558
CH54_3559	CH54_3559		CH54_3559	3875241	3875355	+	5S ribosomal RNA		rRNA	gene3541	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3559
CH54_356	CH54_356	nifJ	nifJ	368921	372454	-	ferredoxin (flavodoxin) oxidoreductase	pyruvate:ferredoxin (flavodoxin) oxidoreductase~pyruv_ox_red: pyruvate:ferredoxin (flavodoxin) oxidoreductase~[C] COG1014 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases%2C gamma subunit	gene	gene354	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_356
CH54_3560	CH54_3560		CH54_3560	3875528	3875869	-	hypothetical protein	conserved hypothetical protein~[R] COG5544 Predicted periplasmic lipoprotein	gene	gene3542	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3560
CH54_3561	CH54_3561		CH54_3561	3875933	3877288	-	phospholipase D family protein	[I] COG1502 Phosphatidylserine/phosphatidylglycerophosphate/cardiolipin synthases and related enzymes	gene	gene3543	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3561
CH54_3562	CH54_3562		CH54_3562	3877466	3880108	-	acetyltransferase family protein	[C] COG1042 Acyl-CoA synthetase (NDP forming)	gene	gene3544	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3562
CH54_3563	CH54_3563		CH54_3563	3880338	3881096	-	DTW domain protein	[S] COG3148 Uncharacterized conserved protein	gene	gene3545	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3563
CH54_3564	CH54_3564	trxA	trxA	3881268	3881708	-	thioredoxin	thioredoxin: thioredoxin~[OC] COG0526 Thiol-disulfide isomerase and thioredoxins	gene	gene3546	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3564
CH54_3565	CH54_3565		CH54_3565	3881929	3883020	+	RNA 2'-O ribose methyltransferase substrate binding family protein	[J] COG0566 rRNA methylases	gene	gene3547	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3565
CH54_3566	CH54_3566		CH54_3566	3883229	3884764	-	drug resistance MFS transporter%2C drug:H+ antiporter-2 family protein	efflux_EmrB: drug resistance MFS transporter%2C drug:H+ antiporter-2 family protein~[GEPR] COG0477 Permeases of the major facilitator superfamily	gene	gene3548	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3566
CH54_3567	CH54_3567		CH54_3567	3884804	3885976	-	efflux pump membrane family protein	8a0101: efflux pump membrane family protein~[V] COG1566 Multidrug resistance efflux pump	gene	gene3549	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3567
CH54_3568	CH54_3568		CH54_3568	3886365	3886877	-	winged helix DNA-binding domain protein	[K] COG1846 Transcriptional regulators	gene	gene3550	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3568
CH54_3569	CH54_3569		CH54_3569	3887049	3887390	-	branched-chain amino acid transport family protein		gene	gene3551	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3569
CH54_357	CH54_357		CH54_357	372847	373179	+	small Multidrug Resistance family protein	[P] COG2076 Membrane transporters of cations and cationic drugs	gene	gene355	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_357
CH54_3570	CH54_3570		CH54_3570	3887387	3888160	-	azlC family protein	[E] COG1296 Predicted branched-chain amino acid permease (azaleucine resistance)	gene	gene3552	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3570
CH54_3571	CH54_3571		CH54_3571	3888289	3889491	-	sugar (and other) transporter family protein	[GEPR] COG0477 Permeases of the major facilitator superfamily	gene	gene3553	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3571
CH54_3572	CH54_3572		CH54_3572	3889567	3890337	-	carbon-nitrogen hydrolase family protein	[R] COG0388 Predicted amidohydrolase	gene	gene3554	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3572
CH54_3573	CH54_3573		CH54_3573	3890325	3891485	-	cys/Met metabolism PLP-dependent enzyme family protein	[E] COG0436 Aspartate/tyrosine/aromatic aminotransferase	gene	gene3555	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3573
CH54_3574	CH54_3574	mtnB	mtnB	3891758	3892390	+	methylthioribulose-1-phosphate dehydratase	salvage_mtnB: methylthioribulose-1-phosphate dehydratase~[G] COG0235 Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases	gene	gene3556	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3574
CH54_3575	CH54_3575	mtnC	mtnC	3892387	3893076	+	2%2C3-diketo-5-methylthio-1-phosphopentane phosphatase	enolase-ppase: 2%2C3-diketo-5-methylthio-1-phosphopentane phosphatase~[C] COG4229 Predicted enolase-phosphatase	gene	gene3557	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3575
CH54_3576	CH54_3576		CH54_3576	3893073	3893615	+	ARD/ARD' family protein	[S] COG1791 Uncharacterized conserved protein%2C contains double-stranded beta-helix domain	gene	gene3558	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3576
CH54_3577	CH54_3577	mtnA	mtnA	3893705	3894745	-	S-methyl-5-thioribose-1-phosphate isomerase	salvage_mtnA: S-methyl-5-thioribose-1-phosphate isomerase~[J] COG0182 Predicted translation initiation factor 2B subunit%2C eIF-2B alpha/beta/delta family	gene	gene3559	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3577
CH54_3578	CH54_3578	mtnK	mtnK	3894939	3896138	+	S-methyl-5-thioribose kinase	MTRK: S-methyl-5-thioribose kinase~[R] COG4857 Predicted kinase	gene	gene3560	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3578
CH54_3579	CH54_3579		CH54_3579	3896253	3898700	-	hypothetical protein	acyl-CoA dehydrogenase%2C C-terminal domain protein~[I] COG1960 Acyl-CoA dehydrogenases	gene	gene3561	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3579
CH54_358	CH54_358		CH54_358	373253	373912	-	mgtC family protein	[S] COG1285 Uncharacterized membrane protein	gene	gene356	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_358
CH54_3580	CH54_3580	gmhA	gmhA	3898995	3899576	+	phosphoheptose isomerase	gmhA: phosphoheptose isomerase~[G] COG0279 Phosphoheptose isomerase	gene	gene3562	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3580
CH54_3581	CH54_3581		CH54_3581	3900405	3901208	-	L%2CD-transpeptidase catalytic domain protein	[S] COG3034 Uncharacterized protein conserved in bacteria	gene	gene3564	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3581
CH54_3582	CH54_3582		CH54_3582	3899667	3900449	+	glutamine amidotransferases class-II family protein	[R] COG0121 Predicted glutamine amidotransferase	gene	gene3563	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3582
CH54_3583	CH54_3583	nqrA	nqrA	3901680	3903023	+	ubiquinone oxidoreductase%2C Na(+)-translocating%2C A subunit	NADH:ubiquinone oxidoreductase%2C Na(+)-translocating%2C A subunit~nqrA: NADH:ubiquinone oxidoreductase%2C Na(+)-translocating%2C A subunit~[C] COG1726 Na+-transporting NADH:ubiquinone oxidoreductase%2C subunit NqrA	gene	gene3565	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3583
CH54_3584	CH54_3584	nqrB	nqrB	3903027	3904268	+	ubiquinone oxidoreductase%2C Na(+)-translocating%2C B subunit	NADH:ubiquinone oxidoreductase%2C Na(+)-translocating%2C B subunit~nqrB: NADH:ubiquinone oxidoreductase%2C Na(+)-translocating%2C B subunit~[C] COG1805 Na+-transporting NADH:ubiquinone oxidoreductase%2C subunit NqrB	gene	gene3566	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3584
CH54_3585	CH54_3585	nqrC	nqrC	3904258	3905058	+	ubiquinone oxidoreductase%2C Na(+)-translocating%2C C subunit	NADH:ubiquinone oxidoreductase%2C Na(+)-translocating%2C C subunit~nqrC: NADH:ubiquinone oxidoreductase%2C Na(+)-translocating%2C C subunit~[C] COG2869 Na+-transporting NADH:ubiquinone oxidoreductase%2C subunit NqrC	gene	gene3567	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3585
CH54_3586	CH54_3586	nqrD	nqrD	3905051	3905680	+	ubiquinone oxidoreductase%2C Na(+)-translocating%2C D subunit	NADH:ubiquinone oxidoreductase%2C Na(+)-translocating%2C D subunit~nqrD: NADH:ubiquinone oxidoreductase%2C Na(+)-translocating%2C D subunit~[C] COG1347 Na+-transporting NADH:ubiquinone oxidoreductase%2C subunit NqrD	gene	gene3568	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3586
CH54_3587	CH54_3587	nqrE	nqrE	3905687	3906283	+	ubiquinone oxidoreductase%2C Na(+)-translocating%2C E subunit	NADH:ubiquinone oxidoreductase%2C Na(+)-translocating%2C E subunit~nqrE: NADH:ubiquinone oxidoreductase%2C Na(+)-translocating%2C E subunit~[C] COG2209 Na+-transporting NADH:ubiquinone oxidoreductase%2C subunit NqrE	gene	gene3569	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3587
CH54_3588	CH54_3588	nqrF	nqrF	3906299	3907522	+	ubiquinone oxidoreductase%2C Na(+)-translocating%2C F subunit	NADH:ubiquinone oxidoreductase%2C Na(+)-translocating%2C F subunit~nqrF: NADH:ubiquinone oxidoreductase%2C Na(+)-translocating%2C F subunit~[C] COG2871 Na+-transporting NADH:ubiquinone oxidoreductase%2C subunit NqrF	gene	gene3570	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3588
CH54_3589	CH54_3589		CH54_3589	3907592	3908599	+	apbE family protein	[H] COG1477 Membrane-associated lipoprotein involved in thiamine biosynthesis	gene	gene3571	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3589
CH54_359	CH54_359		CH54_359	374096	374416	+	hypothetical protein	conserved hypothetical protein~[R] COG3042 Putative hemolysin	gene	gene357	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_359
CH54_3590	CH54_3590		CH54_3590	3908612	3908839	+	hypothetical protein	conserved hypothetical protein~[S] COG2991 Uncharacterized protein conserved in bacteria	gene	gene3572	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3590
CH54_3591	CH54_3591		CH54_3591	3908979	3909929	-	FMN-dependent dehydrogenase family protein	[C] COG0584 Glycerophosphoryl diester phosphodiesterase	gene	gene3573	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3591
CH54_3592	CH54_3592		CH54_3592	3910019	3910219	-	hypothetical protein		gene	gene3574	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3592
CH54_3593	CH54_3593		CH54_3593	3910346	3911446	+	D-alanine--D-alanine ligase family protein	D_ala_D_alaTIGR: D-alanine--D-alanine ligase family protein~[M] COG1181 D-alanine-D-alanine ligase and related ATP-grasp enzymes	gene	gene3575	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3593
CH54_3594	CH54_3594		CH54_3594	3911551	3912183	+	sensory box protein	[S] COG2964 Uncharacterized protein conserved in bacteria	gene	gene3576	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3594
CH54_3595	CH54_3595		CH54_3595	3912186	3913154	+	pyridoxal-phosphate dependent enzyme family protein	[E] COG1171 Threonine dehydratase	gene	gene3577	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3595
CH54_3596	CH54_3596		CH54_3596	3913154	3913546	+	endoribonuclease L-PSP family protein	[J] COG0251 Putative translation initiation inhibitor%2C yjgF family	gene	gene3578	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3596
CH54_3597	CH54_3597		CH54_3597	3913648	3914706	+	hypothetical protein	impB/mucB/samB family C-terminal domain protein~[L] COG0389 Nucleotidyltransferase/DNA polymerase involved in DNA repair	gene	gene3579	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3597
CH54_3598	CH54_3598	pepD	pepD	3914773	3916236	-	Xaa-His dipeptidase family protein	aa-his-dipept: Xaa-His dipeptidase family protein~[E] COG2195 Di- and tripeptidases	gene	gene3580	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3598
CH54_3599	CH54_3599		CH54_3599	3916427	3917566	-	chain length determinant family protein	[M] COG3765 Chain length determinant protein	gene	gene3581	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3599
CH54_36	CH54_36		CH54_36	38692	38919	-	hypothetical protein		gene	gene35	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_36
CH54_360	CH54_360		CH54_360	374678	375670	-	D-isomer specific 2-hydroxyacid dehydrogenase%2C NAD binding domain protein	[CHR] COG1052 Lactate dehydrogenase and related dehydrogenases	gene	gene358	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_360
CH54_3600	CH54_3600		CH54_3600	3917721	3918212	-	cupin fold metallo%2C WbuC family protein	cupin_WbuC: cupin fold metallo%2C WbuC family protein	gene	gene3582	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3600
CH54_3601	CH54_3601		CH54_3601	3918233	3919366	-	UDP-N-acetylglucosamine 2-epimerase	wecB: UDP-N-acetylglucosamine 2-epimerase~[M] COG0381 UDP-N-acetylglucosamine 2-epimerase	gene	gene3583	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3601
CH54_3602	CH54_3602		CH54_3602	3919356	3920474	-	rmlD substrate binding domain protein	[MG] COG0451 Nucleoside-diphosphate-sugar epimerases	gene	gene3584	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3602
CH54_3603	CH54_3603		CH54_3603	3920477	3921511	-	3-beta hydroxysteroid dehydrogenase/isomerase family protein	[MG] COG1086 Predicted nucleoside-diphosphate sugar epimerases	gene	gene3585	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3603
CH54_3604	CH54_3604		CH54_3604	3921514	3922722	-	glycosyl transferases group 1 family protein	[M] COG0438 Glycosyltransferase	gene	gene3586	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3604
CH54_3605	CH54_3605		CH54_3605	3922712	3923809	-	glycosyl transferases group 1 family protein	[M] COG0438 Glycosyltransferase	gene	gene3587	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3605
CH54_3606	CH54_3606		CH54_3606	3923809	3924963	-	epsG family protein		gene	gene3588	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3606
CH54_3607	CH54_3607		CH54_3607	3924965	3926359	-	polysaccharide biosynthesis family protein	[R] COG2244 Membrane protein involved in the export of O-antigen and teichoic acid	gene	gene3589	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3607
CH54_3608	CH54_3608		CH54_3608	3926362	3927408	-	glycosyl transferases group 1 family protein	[M] COG0438 Glycosyltransferase	gene	gene3590	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3608
CH54_3609	CH54_3609		CH54_3609	3927405	3928529	-	glycosyl transferases group 1 family protein	[M] COG0438 Glycosyltransferase	gene	gene3591	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3609
CH54_361	CH54_361		CH54_361	376070	378730	+	dicarboxylate transport family protein		gene	gene359	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_361
CH54_3610	CH54_3610		CH54_3610	3928489	3929652	-	Poly(glycerophosphate) glycerophosphotransferase family protein	CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase family protein~[M] COG1887 Putative glycosyl/glycerophosphate transferases involved in teichoic acid biosynthesis TagF/TagB/EpsJ/RodC	gene	gene3592	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3610
CH54_3611	CH54_3611		CH54_3611	3929649	3930047	-	cytidyltransferase-like domain protein	cyt_tran_rel: cytidyltransferase-like domain protein~[MI] COG0615 Cytidylyltransferase	gene	gene3593	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3611
CH54_3612	CH54_3612		CH54_3612	3930962	3931219	+	hypothetical protein		gene	gene3594	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3612
CH54_3613	CH54_3613		CH54_3613	3931334	3931792	+	phosphoribosyl transferase domain protein	[F] COG0503 Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins	gene	gene3595	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3613
CH54_3614	CH54_3614		CH54_3614	3931918	3933165	+	alpha/beta hydrolase family protein	[R] COG1073 Hydrolases of the alpha/beta superfamily	gene	gene3596	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3614
CH54_3615	CH54_3615		CH54_3615	3933225	3933626	+	transcriptional regulator Crl family protein		gene	gene3597	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3615
CH54_3616	CH54_3616	proB	proB	3933781	3934884	+	glutamate 5-kinase	proB: glutamate 5-kinase~[E] COG0263 Glutamate 5-kinase	gene	gene3598	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3616
CH54_3617	CH54_3617		CH54_3617	3936056	3936313	-	hypothetical protein	conserved hypothetical protein	gene	gene3600	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3617
CH54_3618	CH54_3618	proA	proA	3934894	3936153	+	glutamate-5-semialdehyde dehydrogenase	proA: glutamate-5-semialdehyde dehydrogenase~[E] COG0014 Gamma-glutamyl phosphate reductase	gene	gene3599	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3618
CH54_3619	CH54_3619		CH54_3619	3936590	3937708	+	bacterial regulatory s%2C luxR family protein	[G] COG0524 Sugar kinases%2C ribokinase family	gene	gene3601	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3619
CH54_362	CH54_362		CH54_362	378727	378921	+	ynbE-like lipofamily protein		gene	gene360	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_362
CH54_3620	CH54_3620		CH54_3620	3937705	3938640	+	indigoidine synthase A like family protein	[Q] COG2313 Uncharacterized enzyme involved in pigment biosynthesis	gene	gene3602	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3620
CH54_3621	CH54_3621		CH54_3621	3938788	3940056	+	nucleoside transporter%2C NupC family protein	nupC: nucleoside transporter%2C NupC family protein~[F] COG1972 Nucleoside permease	gene	gene3603	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3621
CH54_3622	CH54_3622		CH54_3622	3940139	3940849	-	UTRA domain protein	[K] COG2188 Transcriptional regulators	gene	gene3604	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3622
CH54_3623	CH54_3623		CH54_3623	3941088	3942632	+	PTS system%2C alpha-glucoside-specific IIBC component domain protein	PTS-IIBC-alpha: PTS system%2C alpha-glucoside-specific IIBC component domain protein~[G] COG1263 Phosphotransferase system IIC components%2C glucose/maltose/N-acetylglucosamine-specific	gene	gene3605	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3623
CH54_3624	CH54_3624		CH54_3624	3942644	3943966	+	4 glycosyl hydrolase family protein	[G] COG1486 Alpha-galactosidases/6-phospho-beta-glucosidases%2C family 4 of glycosyl hydrolases	gene	gene3606	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3624
CH54_3625	CH54_3625		CH54_3625	3944166	3944915	+	pilZ domain protein	[M] COG5581 Predicted glycosyltransferase	gene	gene3607	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3625
CH54_3626	CH54_3626		CH54_3626	3945421	3954132	+	glycosyltransferase 36 associated family protein	[G] COG3459 Cellobiose phosphorylase	gene	gene3608	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3626
CH54_3627	CH54_3627		CH54_3627	3954284	3954538	+	hypothetical protein		gene	gene3609	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3627
CH54_3628	CH54_3628		CH54_3628	3954602	3955081	-	acetyltransferase domain protein	[KR] COG0454 Histone acetyltransferase HPA2 and related acetyltransferases	gene	gene3610	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3628
CH54_3629	CH54_3629		CH54_3629	3955211	3955981	+	S-adenosyl-L-methionine-dependent methyltransferase family protein	[QR] COG0500 SAM-dependent methyltransferases	gene	gene3611	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3629
CH54_363	CH54_363		CH54_363	378931	379302	+	hypothetical protein	conserved hypothetical protein~[S] COG3784 Uncharacterized protein conserved in bacteria	gene	gene361	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_363
CH54_3630	CH54_3630		CH54_3630	3956195	3956464	+	hypothetical protein	conserved hypothetical protein	gene	gene3612	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3630
CH54_3631	CH54_3631		CH54_3631	3956709	3957266	+	methyltransferase small domain protein	[I] COG3963 Phospholipid N-methyltransferase	gene	gene3613	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3631
CH54_3632	CH54_3632		CH54_3632	3957416	3958323	+		tonB dependent receptor family protein	pseudogene	gene3614	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3632
CH54_3636	CH54_3636		CH54_3636	3958671	3959219	+	cytidylate kinase-like family protein	[E] COG0703 Shikimate kinase	gene	gene3615	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3636
CH54_3637	CH54_3637		CH54_3637	3959753	3960040	+	hypothetical protein	conserved hypothetical protein~[S] COG3123 Uncharacterized protein conserved in bacteria	gene	gene3616	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3637
CH54_3638	CH54_3638		CH54_3638	3960110	3961021	-	exonuclease%2C RdgC family protein	[L] COG2974 DNA recombination-dependent growth factor C	gene	gene3617	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3638
CH54_3639	CH54_3639		CH54_3639	3961356	3962270	+	glucokinase family protein	[KG] COG1940 Transcriptional regulator/sugar kinase	gene	gene3618	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3639
CH54_364	CH54_364		CH54_364	379445	380050	-	NADPH-dependent FMN reductase family protein	[I] COG1182 Acyl carrier protein phosphodiesterase	gene	gene362	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_364
CH54_3640	CH54_3640		CH54_3640	3962446	3966135	-	exonuclease SbcC family protein	sbcc: exonuclease SbcC family protein~[L] COG0419 ATPase involved in DNA repair	gene	gene3619	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3640
CH54_3641	CH54_3641	sbcD	sbcD	3966132	3967370	-	exonuclease SbcCD%2C D subunit	sbcd: exonuclease SbcCD%2C D subunit~[L] COG0420 DNA repair exonuclease	gene	gene3620	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3641
CH54_3642	CH54_3642		CH54_3642	3967337	3967588	-	hypothetical protein		gene	gene3621	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3642
CH54_3643	CH54_3643	phoB	phoB	3967640	3968329	+	phosphate regulon transcriptional regulatory protein PhoB	phoB: phosphate regulon transcriptional regulatory protein PhoB~[TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain	gene	gene3622	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3643
CH54_3644	CH54_3644	phoR	phoR	3968354	3969670	+	phosphate regulon sensor kinase PhoR	phoR_proteo: phosphate regulon sensor kinase PhoR~[T] COG0642 Signal transduction histidine kinase	gene	gene3623	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3644
CH54_3645	CH54_3645	pstS	pstS	3969692	3970669	+	phosphate ABC transporter%2C phosphate-binding protein PstS	ptsS_2: phosphate binding family protein~[P] COG0226 ABC-type phosphate transport system%2C periplasmic component	gene	gene3624	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3645
CH54_3646	CH54_3646	brnQ	brnQ	3971038	3972357	+	branched-chain amino acid transport system II carrier protein	livcs: branched-chain amino acid transport system II carrier protein~[E] COG1114 Branched-chain amino acid permeases	gene	gene3625	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3646
CH54_3647	CH54_3647		CH54_3647	3972433	3973824	+	amino acid permease family protein	[E] COG1113 Gamma-aminobutyrate permease and related permeases	gene	gene3626	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3647
CH54_3648	CH54_3648		CH54_3648	3974090	3975928	+	alpha amylase%2C catalytic domain protein	[G] COG0366 Glycosidases	gene	gene3627	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3648
CH54_3649	CH54_3649		CH54_3649	3976076	3976759	+	short chain dehydrogenase family protein	[IQR] COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)	gene	gene3628	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3649
CH54_365	CH54_365	hrpA	hrpA	380409	384296	+	RNA helicase HrpA	DEAH_box_HrpA: RNA helicase HrpA~[L] COG1643 HrpA-like helicases	gene	gene363	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_365
CH54_3650	CH54_3650	ggt	ggt	3976831	3978594	-	gamma-glutamyltransferase	g_glut_trans: gamma-glutamyltransferase~[E] COG0405 Gamma-glutamyltransferase	gene	gene3629	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3650
CH54_3651	CH54_3651		CH54_3651	3979052	3979654	-	hypothetical protein	C-terminal domain of 1-Cys peroxiredoxin family protein~[O] COG0450 Peroxiredoxin	gene	gene3630	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3651
CH54_3652	CH54_3652		CH54_3652	3979879	3980460	-	hypothetical protein	conserved hypothetical protein~[S] COG3124 Uncharacterized protein conserved in bacteria	gene	gene3631	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3652
CH54_3653	CH54_3653	queA	queA	3980603	3981673	+	tRNA ribosyltransferase-isomerase	S-adenosylmethionine:tRNA ribosyltransferase-isomerase~queA: S-adenosylmethionine:tRNA ribosyltransferase-isomerase~[J] COG0809 S-adenosylmethionine:tRNA-ribosyltransferase-isomerase (queuine synthetase)	gene	gene3632	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3653
CH54_3654	CH54_3654		CH54_3654	3981813	3983615	-	outer membrane autotransporter barrel domain protein	autotrans_barl: outer membrane autotransporter barrel domain protein~[MU] COG3468 Type V secretory pathway%2C adhesin AidA	gene	gene3633	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3654
CH54_3655	CH54_3655		CH54_3655	3983627	3984667	-	autotransporter-associated beta strand repeat family protein	[MU] COG3468 Type V secretory pathway%2C adhesin AidA	gene	gene3634	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3655
CH54_3656	CH54_3656		CH54_3656	3984856	3985152	-	hypothetical protein	conserved hypothetical protein	gene	gene3635	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3656
CH54_3657	CH54_3657	tgt	tgt	3985756	3986892	+	tRNA-guanine transglycosylase	Q_tRNA_tgt: tRNA-guanine transglycosylase~[J] COG0343 Queuine/archaeosine tRNA-ribosyltransferase	gene	gene3636	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3657
CH54_3658	CH54_3658	yajC	yajC	3987003	3987335	+	preprotein translocase%2C YajC subunit	yajC: preprotein translocase%2C YajC subunit~[U] COG1862 Preprotein translocase subunit YajC	gene	gene3637	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3658
CH54_3659	CH54_3659	secD	secD	3987396	3989210	+	export membrane protein SecD	secD: -export membrane protein SecD~[U] COG0342 Preprotein translocase subunit SecD	gene	gene3638	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3659
CH54_366	CH54_366		CH54_366	384629	384958	+	hypothetical protein	conserved hypothetical protein~[S] COG4679 Phage-related protein	gene	gene364	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_366
CH54_3660	CH54_3660	secF	secF	3989221	3990189	+	export membrane protein SecF	3a0501s07: -export membrane protein SecF~[U] COG0341 Preprotein translocase subunit SecF	gene	gene3639	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3660
CH54_3661	CH54_3661		CH54_3661	3990590	3992986	+	permease of the major facilitator superfamily protein	permease of the major facilitator superfamily	gene	gene3640	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3661
CH54_3662	CH54_3662	nrdR	nrdR	3993075	3993524	+	transcriptional regulator NrdR	[K] COG1327 Predicted transcriptional regulator%2C consists of a Zn-ribbon and ATP-cone domains	gene	gene3641	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3662
CH54_3663	CH54_3663	ribD	ribD	3993588	3994697	+	riboflavin biosynthesis protein RibD	eubact_ribD: riboflavin biosynthesis protein RibD~[H] COG1985 Pyrimidine reductase%2C riboflavin biosynthesis	gene	gene3642	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3663
CH54_3664	CH54_3664	ribH	ribH	3994831	3995301	+	6%2C7-dimethyl-8-ribityllumazine synthase	lumazine-synth: 6%2C7-dimethyl-8-ribityllumazine synthase~[H] COG0054 Riboflavin synthase beta-chain	gene	gene3643	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3664
CH54_3665	CH54_3665	nusB	nusB	3995327	3995743	+	transcription antitermination factor NusB	nusB: transcription antitermination factor NusB~[K] COG0781 Transcription termination factor	gene	gene3644	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3665
CH54_3666	CH54_3666	thiL	thiL	3995823	3996815	+	thiamine-phosphate kinase	thiL: thiamine-phosphate kinase~[H] COG0611 Thiamine monophosphate kinase	gene	gene3645	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3666
CH54_3667	CH54_3667		CH54_3667	3996805	3997317	+	phosphatidylglycerophosphatase A family protein	[I] COG1267 Phosphatidylglycerophosphatase A and related proteins	gene	gene3646	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3667
CH54_3668	CH54_3668	dxs	dxs	3997367	3999226	-	1-deoxy-D-xylulose-5-phosphate synthase	dxs: 1-deoxy-D-xylulose-5-phosphate synthase~[HI] COG1154 Deoxyxylulose-5-phosphate synthase	gene	gene3647	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3668
CH54_3669	CH54_3669		CH54_3669	3999280	4000200	-	polyprenyl synthetase family protein	[H] COG0142 Geranylgeranyl pyrophosphate synthase	gene	gene3648	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3669
CH54_367	CH54_367		CH54_367	384955	385278	+	helix-turn-helix family protein	[K] COG1396 Predicted transcriptional regulators	gene	gene365	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_367
CH54_3670	CH54_3670	xseB	xseB	4000205	4000459	-	exodeoxyribonuclease VII%2C small subunit	xseB: exodeoxyribonuclease VII%2C small subunit~[L] COG1722 Exonuclease VII small subunit	gene	gene3649	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3670
CH54_3671	CH54_3671	thiI	thiI	4000735	4002186	+	tRNA sulfurtransferase ThiI	[H] COG0301 Thiamine biosynthesis ATP pyrophosphatase	gene	gene3650	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3671
CH54_3672	CH54_3672		CH54_3672	4002502	4003098	-	DJ-1 family protein	not_thiJ: DJ-1 family protein~[R] COG0693 Putative intracellular protease/amidase	gene	gene3651	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3672
CH54_3673	CH54_3673		CH54_3673	4003061	4003972	-	2-dehydropantoate 2-reductase family protein	apbA_panE: 2-dehydropantoate 2-reductase family protein~[H] COG1893 Ketopantoate reductase	gene	gene3652	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3673
CH54_3674	CH54_3674		CH54_3674	4004307	4004798	+	hypothetical protein	conserved hypothetical protein~[S] COG1666 Uncharacterized protein conserved in bacteria	gene	gene3653	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3674
CH54_3675	CH54_3675		CH54_3675	4004841	4006205	-	sugar (and other) transporter family protein	[GEPR] COG0477 Permeases of the major facilitator superfamily	gene	gene3654	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3675
CH54_3676	CH54_3676	cyoE	cyoE	4006379	4007266	-	protoheme IX farnesyltransferase	cyoE_ctaB: protoheme IX farnesyltransferase~[O] COG0109 Polyprenyltransferase (cytochrome oxidase assembly factor)	gene	gene3655	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3676
CH54_3677	CH54_3677	cyoD	cyoD	4007280	4007627	-	cytochrome o ubiquinol oxidase subunit IV	cyoD: cytochrome o ubiquinol oxidase subunit IV~[C] COG3125 Heme/copper-type cytochrome/quinol oxidase%2C subunit 4	gene	gene3656	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3677
CH54_3678	CH54_3678	cyoC	cyoC	4007627	4008241	-	cytochrome o ubiquinol oxidase%2C subunit III	cyoC: cytochrome o ubiquinol oxidase%2C subunit III~[C] COG1845 Heme/copper-type cytochrome/quinol oxidase%2C subunit 3	gene	gene3657	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3678
CH54_3679	CH54_3679	cyoB	cyoB	4008231	4010222	-	cytochrome o ubiquinol oxidase%2C subunit I	cyoB: cytochrome o ubiquinol oxidase%2C subunit I~[C] COG0843 Heme/copper-type cytochrome/quinol oxidases%2C subunit 1	gene	gene3658	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3679
CH54_368	CH54_368		CH54_368	385334	386167	-	trypsin family protein	[E] COG3591 V8-like Glu-specific endopeptidase	gene	gene366	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_368
CH54_3680	CH54_3680	cyoA	cyoA	4010227	4011183	-	ubiquinol oxidase%2C subunit II	cyoA: ubiquinol oxidase%2C subunit II~[C] COG1622 Heme/copper-type cytochrome/quinol oxidases%2C subunit 2	gene	gene3659	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3680
CH54_3681	CH54_3681		CH54_3681	4011546	4012325	-	nucleoside-specific channel-forming%2C Tsx family protein		gene	gene3660	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3681
CH54_3682	CH54_3682		CH54_3682	4012590	4014068	-	AmpG-like permease family protein	2A0125: AmpG-like permease family protein~[GEPR] COG0477 Permeases of the major facilitator superfamily	gene	gene3661	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3682
CH54_3683	CH54_3683		CH54_3683	4014149	4014727	-	hypothetical protein	conserved hypothetical protein~[M] COG3056 Uncharacterized lipoprotein	gene	gene3662	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3683
CH54_3684	CH54_3684		CH54_3684	4015111	4015431	+	bolA-like family protein	[T] COG0271 Stress-induced morphogen (activity unknown)	gene	gene3663	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3684
CH54_3685	CH54_3685	tig	tig	4015879	4017183	+	trigger factor	tig: trigger factor~[O] COG0544 FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor)	gene	gene3664	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3685
CH54_3686	CH54_3686	clpP	clpP	4017756	4018379	+	ATP-dependent Clp endopeptidase%2C proteolytic subunit ClpP	clpP: ATP-dependent Clp endopeptidase%2C proteolytic subunit ClpP~[OU] COG0740 Protease subunit of ATP-dependent Clp proteases	gene	gene3665	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3686
CH54_3687	CH54_3687	clpX	clpX	4018601	4019872	+	ATP-dependent Clp protease%2C ATP-binding subunit ClpX	clpX: ATP-dependent Clp protease%2C ATP-binding subunit ClpX~[O] COG1219 ATP-dependent protease Clp%2C ATPase subunit	gene	gene3666	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3687
CH54_3688	CH54_3688	lon	lon	4020067	4022421	+	endopeptidase La	lon: endopeptidase La~[O] COG0466 ATP-dependent Lon protease%2C bacterial type	gene	gene3667	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3688
CH54_3689	CH54_3689		CH54_3689	4022639	4022911	+	bacterial DNA-binding family protein	[L] COG0776 Bacterial nucleoid DNA-binding protein	gene	gene3668	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3689
CH54_369	CH54_369		CH54_369	386525	386800	-	hypothetical protein		gene	gene367	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_369
CH54_3690	CH54_3690		CH54_3690	4023027	4023143	+	hypothetical protein	conserved hypothetical protein	gene	gene3669	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3690
CH54_3691	CH54_3691		CH54_3691	4023140	4025026	+	PPIC-type PPIASE domain protein	[O] COG0760 Parvulin-like peptidyl-prolyl isomerase	gene	gene3670	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3691
CH54_3692	CH54_3692		CH54_3692	4025182	4025598	+	competence ComEA helix-hairpin-helix repeat region domain protein	[L] COG1555 DNA uptake protein and related DNA-binding proteins	gene	gene3671	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3692
CH54_3693	CH54_3693		CH54_3693	4025862	4026269	+	acyl-CoA thioester hydrolase%2C YbgC/YbaW family protein	[R] COG0824 Predicted thioesterase	gene	gene3672	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3693
CH54_3694	CH54_3694	queC	queC	4026370	4027068	-	queuosine biosynthesis protein QueC	[R] COG0603 Predicted PP-loop superfamily ATPase	gene	gene3673	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3694
CH54_3695	CH54_3695		CH54_3695	4027142	4028884	-	bacterial extracellular solute-binding s%2C 5 Middle family protein	[R] COG4533 ABC-type uncharacterized transport system%2C periplasmic component	gene	gene3674	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3695
CH54_3696	CH54_3696		CH54_3696	4028989	4029810	+	HAD hydrolase%2C IIB family protein	HAD-SF-IIB: HAD hydrolase%2C IIB family protein~[R] COG0561 Predicted hydrolases of the HAD superfamily	gene	gene3675	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3696
CH54_3697	CH54_3697		CH54_3697	4029929	4030969	-	pyridoxal-phosphate dependent enzyme family protein	[E] COG0031 Cysteine synthase	gene	gene3676	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3697
CH54_3698	CH54_3698		CH54_3698	4031095	4031556	+	asnC-type helix-turn-helix domain protein	[K] COG1522 Transcriptional regulators	gene	gene3677	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3698
CH54_3699	CH54_3699		CH54_3699	4031705	4033471	+	ABC transporter family protein	[V] COG1132 ABC-type multidrug transport system%2C ATPase and permease components	gene	gene3678	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3699
CH54_37	CH54_37		CH54_37	39553	40971	+	cytochrome c552 family protein	[P] COG3303 Formate-dependent nitrite reductase%2C periplasmic cytochrome c552 subunit	gene	gene36	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_37
CH54_370	CH54_370		CH54_370	387177	387614	+	hypothetical protein	conserved hypothetical protein	gene	gene368	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_370
CH54_3700	CH54_3700		CH54_3700	4033437	4035242	+	ABC transporter family protein	[V] COG1132 ABC-type multidrug transport system%2C ATPase and permease components	gene	gene3679	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3700
CH54_3701	CH54_3701		CH54_3701	4035623	4035961	+	nitrogen regulatory P-II family protein	[E] COG0347 Nitrogen regulatory protein PII	gene	gene3680	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3701
CH54_3702	CH54_3702	amt	amt	4035998	4037290	+	ammonium transporter family protein	amt: ammonium transporter family protein~[P] COG0004 Ammonia permease	gene	gene3681	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3702
CH54_3703	CH54_3703	tesB	tesB	4037372	4038232	-	acyl-CoA thioesterase II	tesB: acyl-CoA thioesterase II~[I] COG1946 Acyl-CoA thioesterase	gene	gene3682	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3703
CH54_3704	CH54_3704		CH54_3704	4038490	4039014	+	type III secretion system lipochaperone family protein	[S] COG3126 Uncharacterized protein conserved in bacteria	gene	gene3683	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3704
CH54_3705	CH54_3705		CH54_3705	4039058	4039453	-	methylated-DNA--[]-cysteine S-methyltransferase family protein	ogt: methylated-DNA--[]-cysteine S-methyltransferase family protein~[L] COG3695 Predicted methylated DNA-protein cysteine methyltransferase	gene	gene3684	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3705
CH54_3706	CH54_3706		CH54_3706	4040326	4040529	-	hemolysin expression modulating family protein		gene	gene3685	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3706
CH54_3707	CH54_3707		CH54_3707	4040576	4040944	-	biofilm formation regulator YbaJ family protein		gene	gene3686	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3707
CH54_3708	CH54_3708		CH54_3708	4041103	4041456	-	hypothetical protein		gene	gene3687	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3708
CH54_3709	CH54_3709		CH54_3709	4042223	4042951	+	ABC transporter family protein	[P] COG1121 ABC-type Mn/Zn transport systems%2C ATPase component	gene	gene3688	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3709
CH54_371	CH54_371		CH54_371	387774	389255	-	carboxypeptidase Taq (M32) metallopeptidase family protein	[E] COG2317 Zn-dependent carboxypeptidase	gene	gene369	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_371
CH54_3710	CH54_3710		CH54_3710	4042948	4043805	+	ABC 3 transport family protein	[P] COG1108 ABC-type Mn2+/Zn2+ transport systems%2C permease components	gene	gene3689	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3710
CH54_3711	CH54_3711		CH54_3711	4043852	4044730	+	periplasmic solute binding family protein	[P] COG0803 ABC-type metal ion transport system%2C periplasmic component/surface adhesin	gene	gene3690	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3711
CH54_3712	CH54_3712	rpmJ	rpmJ	4044852	4044995	-	ribosomal protein L36	rpmJ_bact: ribosomal protein L36~[J] COG0257 Ribosomal protein L36	gene	gene3691	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3712
CH54_3713	CH54_3713	rpmE	rpmE	4045011	4045271	-	ribosomal protein L31	L31: ribosomal protein L31~[J] COG0254 Ribosomal protein L31	gene	gene3692	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3713
CH54_3714	CH54_3714		CH54_3714	4045436	4046608	-	hypothetical protein	conserved hypothetical protein	gene	gene3693	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3714
CH54_3715	CH54_3715		CH54_3715	4046828	4047193	-	hypothetical protein	conserved hypothetical protein	gene	gene3694	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3715
CH54_3716	CH54_3716		CH54_3716	4047229	4048494	-	metalloenzyme superfamily protein	[G] COG1015 Phosphopentomutase	gene	gene3695	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3716
CH54_3717	CH54_3717		CH54_3717	4048487	4049665	-	hypothetical protein	alanine racemase%2C N-terminal domain protein~[E] COG3457 Predicted amino acid racemase	gene	gene3696	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3717
CH54_3718	CH54_3718		CH54_3718	4049800	4050255	-	PRD domain protein		gene	gene3697	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3718
CH54_3719	CH54_3719		CH54_3719	4050414	4053566	-	RND transporter%2C hydrophobe/amphiphile efflux-1 family protein	2A0602: RND transporter%2C hydrophobe/amphiphile efflux-1 family protein~[V] COG0841 Cation/multidrug efflux pump	gene	gene3698	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3719
CH54_372	CH54_372		CH54_372	389336	390649	-	HAMP domain protein	[T] COG0642 Signal transduction histidine kinase	gene	gene370	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_372
CH54_3720	CH54_3720		CH54_3720	4053583	4054770	-	efflux transporter%2C RND family%2C MFP subunit	RND_mfp: efflux transporter%2C RND family%2C MFP subunit~[M] COG0845 Membrane-fusion protein	gene	gene3699	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3720
CH54_3721	CH54_3721		CH54_3721	4054915	4055553	+	bacterial regulatory s%2C tetR family protein	[K] COG1309 Transcriptional regulator	gene	gene3700	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3721
CH54_3722	CH54_3722		CH54_3722	4055574	4055939	+	dsrE/DsrF-like family protein	[P] COG1553 Uncharacterized conserved protein involved in intracellular sulfur reduction	gene	gene3701	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3722
CH54_3723	CH54_3723		CH54_3723	4056219	4059590	+	mechanosensitive ion channel family protein	[M] COG3264 Small-conductance mechanosensitive channel	gene	gene3702	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3723
CH54_3724	CH54_3724		CH54_3724	4060131	4060667	-	primosomal replication priB and priC family protein	[L] COG3923 Primosomal replication protein N''	gene	gene3703	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3724
CH54_3725	CH54_3725		CH54_3725	4060843	4061223	+	hypothetical protein	conserved hypothetical protein~[S] COG2832 Uncharacterized protein conserved in bacteria	gene	gene3704	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3725
CH54_3726	CH54_3726	apt	apt	4061438	4062001	+	adenine phosphoribosyltransferase	apt: adenine phosphoribosyltransferase~[F] COG0503 Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins	gene	gene3705	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3726
CH54_3727	CH54_3727	dnaX	dnaX	4062085	4064064	+	DNA polymerase III%2C subunit gamma and tau	dnaX_nterm: DNA polymerase III%2C subunit gamma and tau~[L] COG2812 DNA polymerase III%2C gamma/tau subunits	gene	gene3706	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3727
CH54_3728	CH54_3728		CH54_3728	4064120	4064452	+	DNA-binding protein%2C YbaB/EbfC family	DNA_YbaB_EbfC: DNA-binding protein%2C YbaB/EbfC family~[S] COG0718 Uncharacterized protein conserved in bacteria	gene	gene3707	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3728
CH54_3729	CH54_3729	recR	recR	4064452	4065057	+	recombination protein RecR	recR: recombination protein RecR~[L] COG0353 Recombinational DNA repair protein (RecF pathway)	gene	gene3708	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3729
CH54_373	CH54_373		CH54_373	390646	391374	-	response regulator	[TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain	gene	gene371	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_373
CH54_3730	CH54_3730		CH54_3730	4065391	4067265	+	hsp90 family protein	[O] COG0326 Molecular chaperone%2C HSP90 family	gene	gene3709	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3730
CH54_3731	CH54_3731		CH54_3731	4067496	4068140	+	adenylate kinase family protein	adk: adenylate kinase family protein~[F] COG0563 Adenylate kinase and related kinases	gene	gene3710	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3731
CH54_3732	CH54_3732	hemH	hemH	4068271	4069233	+	ferrochelatase	hemH: ferrochelatase~[H] COG0276 Protoheme ferro-lyase (ferrochelatase)	gene	gene3711	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3732
CH54_3733	CH54_3733		CH54_3733	4069587	4070843	+	polysaccharide biosynthesis family protein	[R] COG2244 Membrane protein involved in the export of O-antigen and teichoic acid	gene	gene3712	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3733
CH54_3734	CH54_3734		CH54_3734	4070836	4071792	+	glycosyltransferase like 2 family protein	[M] COG0463 Glycosyltransferases involved in cell wall biogenesis	gene	gene3713	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3734
CH54_3735	CH54_3735		CH54_3735	4071794	4072672	+	glycosyltransferase like 2 family protein	[M] COG0463 Glycosyltransferases involved in cell wall biogenesis	gene	gene3714	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3735
CH54_3736	CH54_3736		CH54_3736	4072681	4073766	+	glycosyl transferases group 1 family protein	[M] COG0438 Glycosyltransferase	gene	gene3715	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3736
CH54_3737	CH54_3737		CH54_3737	4073904	4075004	+	glycosyl transferases group 1 family protein	[M] COG0438 Glycosyltransferase	gene	gene3716	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3737
CH54_3738	CH54_3738		CH54_3738	4075088	4076113	+	glycosyl transferase 4 family protein	[M] COG0472 UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase	gene	gene3717	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3738
CH54_3739	CH54_3739		CH54_3739	4076243	4078108	+	3-beta hydroxysteroid dehydrogenase/isomerase family protein	[MG] COG1086 Predicted nucleoside-diphosphate sugar epimerases	gene	gene3718	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3739
CH54_374	CH54_374		CH54_374	391753	392160	+	hypothetical protein		gene	gene372	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_374
CH54_3740	CH54_3740		CH54_3740	4078164	4079183	+	glycosyl transferases group 1 family protein	[M] COG0438 Glycosyltransferase	gene	gene3719	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3740
CH54_3741	CH54_3741	galE	galE	4079220	4080230	+	UDP-glucose 4-epimerase GalE	galE: UDP-glucose 4-epimerase GalE~[M] COG1087 UDP-glucose 4-epimerase	gene	gene3720	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3741
CH54_3742	CH54_3742		CH54_3742	4080292	4081596	+	pfkB carbohydrate kinase family protein	[G] COG0524 Sugar kinases%2C ribokinase family	gene	gene3721	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3742
CH54_3743	CH54_3743		CH54_3743	4081942	4083633	-	transporter%2C monovalent cation:proton antiporter-2 family protein	2a37: transporter%2C monovalent cation:proton antiporter-2 family protein~[P] COG4651 Kef-type K+ transport system%2C predicted NAD-binding component	gene	gene3722	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3743
CH54_3744	CH54_3744		CH54_3744	4083870	4085102	-	major Facilitator Superfamily protein	[GEPR] COG0477 Permeases of the major facilitator superfamily	gene	gene3723	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3744
CH54_3745	CH54_3745		CH54_3745	4085368	4087020	+	hypothetical protein	5'-nucleotidase%2C C-terminal domain protein~[F] COG0737 5'-nucleotidase/2'%2C3'-cyclic phosphodiesterase and related esterases	gene	gene3724	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3745
CH54_3746	CH54_3746		CH54_3746	4087080	4087559	-	aminoacyl-tRNA editing domain protein	[S] COG2606 Uncharacterized conserved protein	gene	gene3725	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3746
CH54_3747	CH54_3747		CH54_3747	4087832	4088641	-	utp13 specific WD40 associated domain protein	[S] COG3735 Uncharacterized protein conserved in bacteria	gene	gene3726	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3747
CH54_3748	CH54_3748		CH54_3748	4088840	4091599	-	copper-translocating P-type ATPase	ATPase-IB1_Cu: copper-translocating P-type ATPase~[P] COG2217 Cation transport ATPase	gene	gene3727	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3748
CH54_3749	CH54_3749	cueR	cueR	4091797	4092246	+	Cu(I)-responsive transcriptional regulator	cueR: Cu(I)-responsive transcriptional regulator~[K] COG0789 Predicted transcriptional regulators	gene	gene3728	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3749
CH54_375	CH54_375		CH54_375	392257	393648	-	transporter%2C basic amino acid/polyamine antiporter family protein	2A0302: transporter%2C basic amino acid/polyamine antiporter family protein~[E] COG0531 Amino acid transporters	gene	gene373	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_375
CH54_3750	CH54_3750		CH54_3750	4092308	4092757	-	hypothetical protein	nfeD-like C-terminal%2C partner-binding family protein~[OU] COG1585 Membrane protein implicated in regulation of membrane protease activity	gene	gene3729	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3750
CH54_3751	CH54_3751		CH54_3751	4092760	4093674	-	SPFH domain / Band 7 family protein	[O] COG0330 Membrane protease subunits%2C stomatin/prohibitin homologs	gene	gene3730	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3751
CH54_3752	CH54_3752		CH54_3752	4093870	4094739	-	thioredoxin family protein	[O] COG3118 Thioredoxin domain-containing protein	gene	gene3731	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3752
CH54_3753	CH54_3753		CH54_3753	4094804	4095580	-	short chain dehydrogenase family protein	[IQR] COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)	gene	gene3732	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3753
CH54_3754	CH54_3754		CH54_3754	4095633	4096208	-	GDSL-like Lipase/Acylhydrolase family protein	[E] COG2755 Lysophospholipase L1 and related esterases	gene	gene3733	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3754
CH54_3755	CH54_3755		CH54_3755	4096242	4096928	+	ABC transporter family protein	[Q] COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis%2C ATPase component	gene	gene3734	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3755
CH54_3756	CH54_3756		CH54_3756	4096925	4099357	+	ftsX-like permease family protein	[Q] COG3127 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis%2C permease component	gene	gene3735	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3756
CH54_3757	CH54_3757	purK	purK	4099396	4100460	-	phosphoribosylaminoimidazole carboxylase%2C ATPase subunit	purK: phosphoribosylaminoimidazole carboxylase%2C ATPase subunit~[F] COG0026 Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase)	gene	gene3736	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3757
CH54_3758	CH54_3758	purE	purE	4100457	4100981	-	phosphoribosylaminoimidazole carboxylase%2C catalytic subunit	purE: phosphoribosylaminoimidazole carboxylase%2C catalytic subunit~[F] COG0041 Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase	gene	gene3737	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3758
CH54_3759	CH54_3759	lpxH	lpxH	4101160	4101882	-	UDP-2%2C3-diacylglucosamine diphosphatase	lipid_A_lpxH: UDP-2%2C3-diacylglucosamine diphosphatase~[S] COG2908 Uncharacterized protein conserved in bacteria	gene	gene3738	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3759
CH54_376	CH54_376		CH54_376	393912	394865	-	hypothetical protein	conserved hypothetical protein	gene	gene374	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_376
CH54_3760	CH54_3760		CH54_3760	4101893	4102387	-	cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD family protein	[O] COG0652 Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family	gene	gene3739	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3760
CH54_3761	CH54_3761	cysS	cysS	4102600	4103988	+	cysteine--tRNA ligase	cysS: cysteine--tRNA ligase~[J] COG0215 Cysteinyl-tRNA synthetase	gene	gene3740	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3761
CH54_3762	CH54_3762		CH54_3762	4104195	4104407	-	S4 domain protein	[S] COG2501 Uncharacterized conserved protein	gene	gene3741	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3762
CH54_3763	CH54_3763		CH54_3763	4104407	4105288	-	tetrahydrofolate dehydrogenase/cyclohydrolase%2C catalytic domain protein	[H] COG0190 5%2C10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase	gene	gene3742	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3763
CH54_3764	CH54_3764		CH54_3764	4105502	4105578	+	tRNA-Arg		tRNA	gene3743	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3764
CH54_3765	CH54_3765		CH54_3765	4105612	4106766	-	phage integrase family protein	[L] COG0582 Integrase	gene	gene3744	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3765
CH54_3766	CH54_3766		CH54_3766	4107353	4107895	-	phage N-6-adenine-methyltransferase	phage_N6A_met: phage N-6-adenine-methyltransferase	gene	gene3745	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3766
CH54_3767	CH54_3767		CH54_3767	4107892	4108095	-	hypothetical protein	conserved hypothetical protein	gene	gene3746	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3767
CH54_3768	CH54_3768		CH54_3768	4108095	4108271	-	hypothetical protein		gene	gene3747	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3768
CH54_3769	CH54_3769		CH54_3769	4108332	4108502	-	hypothetical protein		gene	gene3748	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3769
CH54_377	CH54_377	pntA	pntA	395509	397035	+	NAD(P)(+) transhydrogenase (AB-specific)%2C alpha subunit	pntA: NAD(P)(+) transhydrogenase (AB-specific)%2C alpha subunit~[C] COG3288 NAD/NADP transhydrogenase alpha subunit	gene	gene375	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_377
CH54_3770	CH54_3770		CH54_3770	4108502	4108777	-	hypothetical protein		gene	gene3749	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3770
CH54_3771	CH54_3771		CH54_3771	4108761	4108982	-	hypothetical protein		gene	gene3750	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3771
CH54_3772	CH54_3772		CH54_3772	4108972	4109517	-	AP2 domain protein		gene	gene3751	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3772
CH54_3773	CH54_3773		CH54_3773	4109507	4109893	-	hypothetical protein		gene	gene3752	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3773
CH54_3774	CH54_3774		CH54_3774	4109893	4110537	-	hypothetical protein		gene	gene3753	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3774
CH54_3775	CH54_3775		CH54_3775	4110761	4111468	-	yqaJ-like viral recombinase domain protein		gene	gene3754	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3775
CH54_3776	CH54_3776		CH54_3776	4111461	4112360	-	recombinase%2C phage RecT family protein	rect: recombinase%2C phage RecT family protein~[L] COG3723 Recombinational DNA repair protein (RecE pathway)	gene	gene3755	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3776
CH54_3777	CH54_3777		CH54_3777	4112360	4112653	-	hypothetical protein		gene	gene3756	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3777
CH54_3778	CH54_3778		CH54_3778	4113100	4113321	-	hypothetical protein	conserved hypothetical protein	gene	gene3757	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3778
CH54_3779	CH54_3779		CH54_3779	4113395	4113967	-	hypothetical protein	conserved hypothetical protein	gene	gene3758	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3779
CH54_378	CH54_378		CH54_378	397222	398613	+	NAD(P) transhydrogenase beta subunit	[C] COG1282 NAD/NADP transhydrogenase beta subunit	gene	gene376	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_378
CH54_3780	CH54_3780		CH54_3780	4113992	4114252	-	hypothetical protein		gene	gene3759	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3780
CH54_3781	CH54_3781		CH54_3781	4114989	4115267	-	hypothetical protein		gene	gene3761	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3781
CH54_3782	CH54_3782		CH54_3782	4114415	4114996	+	superinfection exclusion B family protein		gene	gene3760	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3782
CH54_3783	CH54_3783		CH54_3783	4115270	4115566	-	hypothetical protein		gene	gene3762	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3783
CH54_3784	CH54_3784		CH54_3784	4115613	4115810	-	hypothetical protein		gene	gene3763	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3784
CH54_3785	CH54_3785		CH54_3785	4116454	4116663	+	hypothetical protein	conserved hypothetical protein	gene	gene3764	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3785
CH54_3786	CH54_3786		CH54_3786	4116723	4117691	-	P63C domain protein		gene	gene3765	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3786
CH54_3787	CH54_3787		CH54_3787	4117889	4118611	-	helix-turn-helix family protein	[KT] COG1974 SOS-response transcriptional repressors (RecA-mediated autopeptidases)	gene	gene3766	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3787
CH54_3788	CH54_3788		CH54_3788	4118716	4118910	+	cro family protein		gene	gene3767	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3788
CH54_3789	CH54_3789		CH54_3789	4119026	4119322	+	bacteriophage CII family protein		gene	gene3768	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3789
CH54_379	CH54_379		CH54_379	398695	399651	-	universal stress family protein	[T] COG0589 Universal stress protein UspA and related nucleotide-binding proteins	gene	gene377	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_379
CH54_3790	CH54_3790		CH54_3790	4119334	4119750	+	hypothetical protein	conserved hypothetical protein	gene	gene3769	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3790
CH54_3791	CH54_3791		CH54_3791	4119747	4119911	+	hypothetical protein		gene	gene3770	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3791
CH54_3792	CH54_3792		CH54_3792	4119904	4120770	+	hypothetical protein	phage_O_Nterm: phage replication protein O%2C N-terminal domain	gene	gene3771	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3792
CH54_3793	CH54_3793		CH54_3793	4120772	4122109	+	hypothetical protein	dnaB-like helicase N terminal domain protein~[L] COG0305 Replicative DNA helicase	gene	gene3772	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3793
CH54_3794	CH54_3794		CH54_3794	4122125	4122400	+	hypothetical protein	conserved hypothetical protein	gene	gene3773	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3794
CH54_3795	CH54_3795		CH54_3795	4122397	4122699	+	hypothetical protein		gene	gene3774	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3795
CH54_3796	CH54_3796		CH54_3796	4122696	4123169	+	hypothetical protein		gene	gene3775	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3796
CH54_3797	CH54_3797		CH54_3797	4123166	4123612	+	hypothetical protein		gene	gene3776	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3797
CH54_3798	CH54_3798		CH54_3798	4123616	4124065	+	hypothetical protein	conserved hypothetical protein	gene	gene3777	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3798
CH54_3799	CH54_3799		CH54_3799	4124153	4124500	+	hypothetical protein	conserved hypothetical protein	gene	gene3778	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3799
CH54_38	CH54_38	nrfB	nrfB	41061	41618	+	cytochrome c nitrite reductase%2C pentaheme subunit	cyt_nit_nrfB: cytochrome c nitrite reductase%2C pentaheme subunit	gene	gene37	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_38
CH54_380	CH54_380		CH54_380	399886	400638	-	bacterial regulatory s%2C crp family protein	[T] COG0664 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases	gene	gene378	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_380
CH54_3800	CH54_3800		CH54_3800	4124493	4124627	+	hypothetical protein		gene	gene3779	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3800
CH54_3801	CH54_3801		CH54_3801	4124602	4124892	+	hypothetical protein	conserved hypothetical protein	gene	gene3780	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3801
CH54_3802	CH54_3802		CH54_3802	4124889	4125251	+	endodeoxyribonuclease RusA family protein	[L] COG4570 Holliday junction resolvase	gene	gene3781	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3802
CH54_3803	CH54_3803		CH54_3803	4125248	4125853	+	hypothetical protein		gene	gene3782	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3803
CH54_3804	CH54_3804		CH54_3804	4126259	4126582	+	hypothetical protein	conserved hypothetical protein	gene	gene3783	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3804
CH54_3805	CH54_3805		CH54_3805	4126706	4126900	+	hypothetical protein		gene	gene3784	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3805
CH54_3806	CH54_3806		CH54_3806	4126878	4127360	+	phage lysozyme family protein	[R] COG3772 Phage-related lysozyme (muraminidase)	gene	gene3785	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3806
CH54_3807	CH54_3807		CH54_3807	4127345	4127737	+	hypothetical protein		gene	gene3786	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3807
CH54_3808	CH54_3808		CH54_3808	4128010	4128114	+	putative membrane protein		gene	gene3787	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3808
CH54_3809	CH54_3809		CH54_3809	4128380	4129081	+	phage antirepressor KilAC domain protein	[S] COG3645 Uncharacterized phage-encoded protein	gene	gene3788	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3809
CH54_381	CH54_381		CH54_381	400711	401229	-	methylated-DNA--[]-cysteine S-methyltransferase family protein	ogt: methylated-DNA--[]-cysteine S-methyltransferase family protein~[L] COG0350 Methylated DNA-protein cysteine methyltransferase	gene	gene379	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_381
CH54_3810	CH54_3810		CH54_3810	4129169	4129441	+	hypothetical protein	conserved hypothetical protein	gene	gene3789	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3810
CH54_3811	CH54_3811		CH54_3811	4129567	4129998	+	terminase small subunit		gene	gene3790	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3811
CH54_3812	CH54_3812		CH54_3812	4129982	4131280	+	phage terminase large subunit	[R] COG1783 Phage terminase large subunit	gene	gene3791	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3812
CH54_3813	CH54_3813		CH54_3813	4131225	4132754	+	hypothetical protein		gene	gene3792	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3813
CH54_3814	CH54_3814		CH54_3814	4132696	4133700	+	phage Mu F like family protein		gene	gene3793	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3814
CH54_3815	CH54_3815		CH54_3815	4133743	4135140	+	hypothetical protein		gene	gene3794	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3815
CH54_3816	CH54_3816		CH54_3816	4135144	4135584	+	hypothetical protein		gene	gene3795	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3816
CH54_3817	CH54_3817		CH54_3817	4135595	4136671	+	hypothetical protein		gene	gene3796	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3817
CH54_3818	CH54_3818		CH54_3818	4136681	4137046	+	hypothetical protein	conserved hypothetical protein	gene	gene3797	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3818
CH54_3819	CH54_3819		CH54_3819	4137049	4137420	+	hypothetical protein		gene	gene3798	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3819
CH54_382	CH54_382		CH54_382	401472	402260	+	N-formylglutamate amidohydrolase family protein	[E] COG3931 Predicted N-formylglutamate amidohydrolase	gene	gene380	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_382
CH54_3820	CH54_3820		CH54_3820	4137423	4137734	+	hypothetical protein		gene	gene3799	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3820
CH54_3821	CH54_3821		CH54_3821	4137731	4138072	+	hypothetical protein		gene	gene3800	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3821
CH54_3822	CH54_3822		CH54_3822	4138074	4138445	+	hypothetical protein		gene	gene3801	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3822
CH54_3823	CH54_3823		CH54_3823	4138442	4138657	+	hypothetical protein	conserved hypothetical protein	gene	gene3802	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3823
CH54_3824	CH54_3824		CH54_3824	4138654	4139028	+	hypothetical protein		gene	gene3803	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3824
CH54_3825	CH54_3825		CH54_3825	4139086	4139829	+	bacterial Ig-like domain family protein	[N] COG5492 Bacterial surface proteins containing Ig-like domains	gene	gene3804	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3825
CH54_3826	CH54_3826		CH54_3826	4139882	4140622	+	hypothetical protein		gene	gene3805	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3826
CH54_3827	CH54_3827		CH54_3827	4140669	4143809	+	tape measure domain protein	tape_meas_nterm: tape measure domain protein~[S] COG5281 Phage-related minor tail protein	gene	gene3806	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3827
CH54_3828	CH54_3828		CH54_3828	4143806	4144273	+	hypothetical protein		gene	gene3807	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3828
CH54_3829	CH54_3829		CH54_3829	4144273	4144743	+	hypothetical protein		gene	gene3808	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3829
CH54_383	CH54_383		CH54_383	402418	402936	+	hypothetical protein	conserved hypothetical protein~[S] COG1683 Uncharacterized conserved protein	gene	gene381	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_383
CH54_3830	CH54_3830		CH54_3830	4144777	4145169	+	nlpC/P60 family protein		gene	gene3809	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3830
CH54_3831	CH54_3831		CH54_3831	4145129	4147606	+	hypothetical protein		gene	gene3810	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3831
CH54_3832	CH54_3832		CH54_3832	4147669	4147812	-	hypothetical protein		gene	gene3811	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3832
CH54_3833	CH54_3833		CH54_3833	4147826	4148161	-	arc-like DNA binding domain protein		gene	gene3812	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3833
CH54_3834	CH54_3834		CH54_3834	4148251	4148409	+	hypothetical protein	conserved hypothetical protein	gene	gene3813	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3834
CH54_3835	CH54_3835		CH54_3835	4148483	4149385	+	hypothetical protein	P22_AR N-terminal domain protein~[K] COG3617 Prophage antirepressor	gene	gene3814	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3835
CH54_3836	CH54_3836		CH54_3836	4149461	4150165	+	phage regulatory Rha family protein		gene	gene3815	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3836
CH54_3837	CH54_3837		CH54_3837	4150268	4150732	+	putative lipoprotein		gene	gene3816	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3837
CH54_3838	CH54_3838		CH54_3838	4150819	4151718	-	hypothetical protein	P22AR C-terminal domain protein	gene	gene3817	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3838
CH54_3839	CH54_3839		CH54_3839	4151723	4151929	-	arc-like DNA binding domain protein		gene	gene3818	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3839
CH54_384	CH54_384		CH54_384	403044	403520	+	gyrI-like small molecule binding domain protein	[L] COG3449 DNA gyrase inhibitor	gene	gene382	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_384
CH54_3840	CH54_3840		CH54_3840	4152021	4152305	+	arc-like DNA binding domain protein		gene	gene3819	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3840
CH54_3841	CH54_3841		CH54_3841	4152362	4152748	+	putative lipoprotein		gene	gene3820	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3841
CH54_3842	CH54_3842		CH54_3842	4152848	4155022	+	GDSL-like Lipase/Acylhydrolase family protein		gene	gene3821	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3842
CH54_3843	CH54_3843		CH54_3843	4155443	4155697	+	hypothetical protein	conserved hypothetical protein~[L] COG0582 Integrase	gene	gene3822	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3843
CH54_3844	CH54_3844		CH54_3844	4155790	4155864	-	tRNA-Arg		tRNA	gene3823	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3844
CH54_3845	CH54_3845		CH54_3845	4156038	4156949	-	formate/nitrite transporter family protein	[P] COG2116 Formate/nitrite family of transporters	gene	gene3824	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3845
CH54_3846	CH54_3846	ccmA	ccmA	4157221	4157847	+	heme ABC exporter%2C ATP-binding protein CcmA	ccmA: heme ABC exporter%2C ATP-binding protein CcmA~[O] COG4133 ABC-type transport system involved in cytochrome c biogenesis%2C ATPase component	gene	gene3825	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3846
CH54_3847	CH54_3847	ccmB	ccmB	4157847	4158506	+	heme exporter protein CcmB	ccmB: heme exporter protein CcmB~[O] COG2386 ABC-type transport system involved in cytochrome c biogenesis%2C permease component	gene	gene3826	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3847
CH54_3848	CH54_3848	ccmC	ccmC	4158689	4159426	+	heme exporter CcmC family protein	ccmC: heme exporter CcmC family protein~[O] COG0755 ABC-type transport system involved in cytochrome c biogenesis%2C permease component	gene	gene3827	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3848
CH54_3849	CH54_3849	ccmD	ccmD	4159423	4159671	+	heme exporter protein CcmD	cytochro_ccmD: heme exporter protein CcmD~[U] COG3114 Heme exporter protein D	gene	gene3828	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3849
CH54_385	CH54_385		CH54_385	403600	404571	-	bacterial regulatory helix-turn-helix%2C lysR family protein	[K] COG0583 Transcriptional regulator	gene	gene384	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_385
CH54_3850	CH54_3850		CH54_3850	4159668	4160162	+	ccmE family protein	[O] COG2332 Cytochrome c-type biogenesis protein CcmE	gene	gene3829	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3850
CH54_3851	CH54_3851	ccmF	ccmF	4160159	4162126	+	cytochrome c-type biogenesis protein CcmF	nrfE: cytochrome c-type biogenesis protein CcmF~[O] COG1138 Cytochrome c biogenesis factor	gene	gene3830	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3851
CH54_3852	CH54_3852	dsbE	dsbE	4162126	4162692	+	periplasmic thiol:disulfide oxidoreductase%2C DsbE subfamily protein	dsbE: periplasmic thiol:disulfide oxidoreductases%2C DsbE subfamily protein~[OC] COG0526 Thiol-disulfide isomerase and thioredoxins	gene	gene3831	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3852
CH54_3853	CH54_3853		CH54_3853	4162689	4163210	+	cytochrome C biogenesis family protein	[O] COG3088 Uncharacterized protein involved in biosynthesis of c-type cytochromes	gene	gene3832	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3853
CH54_3854	CH54_3854	ccmI	ccmI	4163210	4164430	+	cytochrome c-type biogenesis protein CcmI	cytochro_ccmI: cytochrome c-type biogenesis protein CcmI~[O] COG4235 Cytochrome c biogenesis factor	gene	gene3833	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3854
CH54_3855	CH54_3855		CH54_3855	4164467	4165231	+	vacJ like lipofamily protein	[M] COG2853 Surface lipoprotein	gene	gene3834	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3855
CH54_3856	CH54_3856		CH54_3856	4165309	4166577	-	outer membrane transport family protein	[I] COG2067 Long-chain fatty acid transport protein	gene	gene3835	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3856
CH54_3857	CH54_3857		CH54_3857	4166992	4167288	+	hypothetical protein	conserved hypothetical family protein~[S] COG3691 Uncharacterized protein conserved in bacteria	gene	gene3836	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3857
CH54_3858	CH54_3858	fadI	fadI	4167606	4168916	+	acetyl-CoA C-acyltransferase FadI	fadI: acetyl-CoA C-acyltransferase FadI~[I] COG0183 Acetyl-CoA acetyltransferase	gene	gene3837	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3858
CH54_3859	CH54_3859	fadJ	fadJ	4168916	4171153	+	fatty oxidation complex%2C alpha subunit FadJ	fadJ: fatty oxidation complex%2C alpha subunit FadJ~[I] COG1024 Enoyl-CoA hydratase/carnithine racemase	gene	gene3838	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3859
CH54_386	CH54_386		CH54_386	403459	403662	+	hypothetical protein		gene	gene383	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_386
CH54_3860	CH54_3860	sixA	sixA	4171536	4172027	+	phosphohistidine phosphatase SixA	sixA: phosphohistidine phosphatase SixA~[T] COG2062 Phosphohistidine phosphatase SixA	gene	gene3839	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3860
CH54_3861	CH54_3861		CH54_3861	4172155	4172709	-	smr domain protein	[S] COG2840 Uncharacterized protein conserved in bacteria	gene	gene3840	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3861
CH54_3862	CH54_3862	prmB	prmB	4172892	4173824	+	(glutamine-N5) methyltransferase%2C ribosomal protein L3-specific	L3_gln_methyl: -(glutamine-N5) methyltransferase%2C ribosomal protein L3-specific~[J] COG2890 Methylase of polypeptide chain release factors	gene	gene3841	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3862
CH54_3863	CH54_3863	aroC	aroC	4173898	4174983	+	chorismate synthase	aroC: chorismate synthase~[E] COG0082 Chorismate synthase	gene	gene3842	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3863
CH54_3864	CH54_3864		CH54_3864	4174989	4175816	+	penicillin-insensitive murein endopeptidase family protein	[M] COG3770 Murein endopeptidase	gene	gene3843	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3864
CH54_3865	CH54_3865		CH54_3865	4175820	4176626	+	sulfite exporter TauE/SafE family protein	[R] COG0730 Predicted permeases	gene	gene3844	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3865
CH54_3866	CH54_3866		CH54_3866	4176782	4177405	+	hypothetical protein	conserved hypothetical protein~[S] COG3101 Uncharacterized protein conserved in bacteria	gene	gene3845	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3866
CH54_3867	CH54_3867		CH54_3867	4177450	4177737	+	yfcL family protein		gene	gene3846	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3867
CH54_3868	CH54_3868	mnmC	mnmC	4178257	4180320	-	tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC	mnmC_Cterm: tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC%2C C-terminal domain~[E] COG0665 Glycine/D-amino acid oxidases (deaminating)	gene	gene3847	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3868
CH54_3869	CH54_3869		CH54_3869	4180492	4181715	+	hypothetical protein	thiolase%2C N-terminal domain protein~[IQ] COG0304 3-oxoacyl-(acyl-carrier-protein) synthase	gene	gene3848	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3869
CH54_387	CH54_387		CH54_387	404747	405487	+	short chain dehydrogenase family protein	[IQR] COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)	gene	gene385	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_387
CH54_3870	CH54_3870		CH54_3870	4182134	4183141	+	diguanylate cyclase domain protein	GGDEF: diguanylate cyclase domain protein~[T] COG2202 FOG: PAS/PAC domain	gene	gene3849	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3870
CH54_3871	CH54_3871		CH54_3871	4183179	4183877	-	aspartate racemase family protein	asp_race: aspartate racemase family protein~[M] COG1794 Aspartate racemase	gene	gene3850	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3871
CH54_3872	CH54_3872		CH54_3872	4184047	4185441	-	lamB porin family protein	[G] COG4580 Maltoporin (phage lambda and maltose receptor)	gene	gene3851	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3872
CH54_3873	CH54_3873		CH54_3873	4185629	4185931	-	PTS system%2C Lactose/Cellobiose specific IIA subunit	[G] COG1447 Phosphotransferase system cellobiose-specific component IIA	gene	gene3852	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3873
CH54_3874	CH54_3874		CH54_3874	4185946	4187328	-	glycosyl hydrolase 1 family protein	[G] COG2723 Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase	gene	gene3853	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3874
CH54_3875	CH54_3875		CH54_3875	4187355	4188686	-	PTS system%2C lactose/cellobiose IIC component family protein	lacE: PTS system%2C lactose/cellobiose IIC component family protein~[G] COG1455 Phosphotransferase system cellobiose-specific component IIC	gene	gene3854	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3875
CH54_3876	CH54_3876		CH54_3876	4188699	4189013	-	PTS system%2C Lactose/Cellobiose specific IIB subunit	[G] COG1440 Phosphotransferase system cellobiose-specific component IIB	gene	gene3855	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3876
CH54_3877	CH54_3877		CH54_3877	4189367	4190323	+	bacterial regulatory s%2C lacI family protein	[K] COG1609 Transcriptional regulators	gene	gene3856	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3877
CH54_3878	CH54_3878		CH54_3878	4190560	4191861	+	histidine phosphatase super family protein		gene	gene3857	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3878
CH54_3879	CH54_3879		CH54_3879	4191977	4193110	+	citrate transporter family protein	[P] COG0471 Di- and tricarboxylate transporters	gene	gene3858	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3879
CH54_388	CH54_388		CH54_388	405706	407136	+	alkaline phosphatase family protein	[P] COG1785 Alkaline phosphatase	gene	gene386	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_388
CH54_3880	CH54_3880		CH54_3880	4193179	4194216	-	hypothetical protein		gene	gene3859	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3880
CH54_3881	CH54_3881		CH54_3881	4194945	4197005	+	cytochrome C biogenesis transmembrane region family protein	[OC] COG4232 Thiol:disulfide interchange protein	gene	gene3860	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3881
CH54_3882	CH54_3882		CH54_3882	4197002	4197745	+	DSBA-like thioredoxin domain protein	[O] COG1651 Protein-disulfide isomerase	gene	gene3861	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3882
CH54_3883	CH54_3883		CH54_3883	4197742	4198242	+	thioredoxin family protein	[OC] COG0526 Thiol-disulfide isomerase and thioredoxins	gene	gene3862	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3883
CH54_3884	CH54_3884		CH54_3884	4198281	4199747	-	aminotransferase class I and II family protein	[KE] COG1167 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs	gene	gene3863	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3884
CH54_3885	CH54_3885		CH54_3885	4199929	4200972	+	eamA-like transporter family protein	[GER] COG0697 Permeases of the drug/metabolite transporter (DMT) superfamily	gene	gene3864	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3885
CH54_3886	CH54_3886		CH54_3886	4200977	4201861	-	eamA-like transporter family protein	[GER] COG0697 Permeases of the drug/metabolite transporter (DMT) superfamily	gene	gene3865	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3886
CH54_3887	CH54_3887		CH54_3887	4202000	4202782	+	helix-turn-helix domain protein	[K] COG2207 AraC-type DNA-binding domain-containing proteins	gene	gene3866	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3887
CH54_3888	CH54_3888		CH54_3888	4202829	4203962	+	hypothetical protein	conserved hypothetical protein~[HE] COG0111 Phosphoglycerate dehydrogenase and related dehydrogenases	gene	gene3867	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3888
CH54_3889	CH54_3889		CH54_3889	4204155	4205165	+	semialdehyde dehydrogenase%2C dimerization domain protein	[E] COG0136 Aspartate-semialdehyde dehydrogenase	gene	gene3868	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3889
CH54_389	CH54_389		CH54_389	407661	410024	+	terB-N family protein		gene	gene387	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_389
CH54_3890	CH54_3890	truA	truA	4205165	4206007	+	tRNA pseudouridine(38-40) synthase	hisT_truA: tRNA pseudouridine(38-40) synthase~[J] COG0101 Pseudouridylate synthase	gene	gene3869	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3890
CH54_3891	CH54_3891		CH54_3891	4206752	4206889	-	hypothetical protein		gene	gene3871	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3891
CH54_3892	CH54_3892		CH54_3892	4206152	4206814	+	hypothetical protein	conserved hypothetical protein~[S] COG0586 Uncharacterized membrane-associated protein	gene	gene3870	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3892
CH54_3893	CH54_3893	accD	accD	4207060	4207971	+	acetyl-CoA carboxylase%2C carboxyl transferase%2C beta subunit	accD: acetyl-CoA carboxylase%2C carboxyl transferase%2C beta subunit~[I] COG0777 Acetyl-CoA carboxylase beta subunit	gene	gene3872	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3893
CH54_3894	CH54_3894		CH54_3894	4208021	4208164	-	hypothetical protein		gene	gene3873	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3894
CH54_3895	CH54_3895	folC	folC	4208278	4209528	+	bifunctional FolC family protein	folC: bifunctional FolC family protein~[H] COG0285 Folylpolyglutamate synthase	gene	gene3874	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3895
CH54_3896	CH54_3896		CH54_3896	4210266	4210421	-	hypothetical protein		gene	gene3876	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3896
CH54_3897	CH54_3897		CH54_3897	4209564	4210313	+	sporulation related domain protein	[S] COG3147 Uncharacterized protein conserved in bacteria	gene	gene3875	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3897
CH54_3898	CH54_3898		CH54_3898	4210505	4211014	+	colicin V production family protein	[R] COG1286 Uncharacterized membrane protein%2C required for colicin V production	gene	gene3877	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3898
CH54_3899	CH54_3899	purF	purF	4211027	4212544	+	amidophosphoribosyltransferase	purF: amidophosphoribosyltransferase~[F] COG0034 Glutamine phosphoribosylpyrophosphate amidotransferase	gene	gene3878	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3899
CH54_39	CH54_39	nrfC	nrfC	41615	42286	+	cytochrome c nitrite reductase%2C Fe-S protein	cyt_nit_nrfC: cytochrome c nitrite reductase%2C Fe-S protein~[C] COG0437 Fe-S-cluster-containing hydrogenase components 1	gene	gene38	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_39
CH54_390	CH54_390		CH54_390	410127	410801	+	noncanonical pyrimidine nucleotidase%2C YjjG family	yjjG/YfnB: noncanonical pyrimidine nucleotidase%2C YjjG family~[R] COG1011 Predicted hydrolase (HAD superfamily)	gene	gene388	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_390
CH54_3900	CH54_3900		CH54_3900	4212769	4213341	+	polyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylase family protein	ubiX_pad: polyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylase family protein~[H] COG0163 3-polyprenyl-4-hydroxybenzoate decarboxylase	gene	gene3879	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3900
CH54_3901	CH54_3901		CH54_3901	4213649	4214431	+	lysine-arginine-ornithine-binding periplasmic family protein	3A0103s03R: lysine-arginine-ornithine-binding periplasmic family protein~[ET] COG0834 ABC-type amino acid transport/signal transduction systems%2C periplasmic component/domain	gene	gene3880	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3901
CH54_3902	CH54_3902		CH54_3902	4214541	4215227	+	amino ABC transporter%2C permease%2C 3-TM region%2C His/Glu/Gln/Arg/opine family domain protein	HEQRo_perm_3TM: amino ABC transporter%2C permease%2C 3-TM region%2C His/Glu/Gln/Arg/opine family domain protein~[E] COG4215 ABC-type arginine transport system%2C permease component	gene	gene3881	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3902
CH54_3903	CH54_3903		CH54_3903	4215224	4215940	+	amino ABC transporter%2C permease%2C 3-TM region%2C His/Glu/Gln/Arg/opine family domain protein	HEQRo_perm_3TM: amino ABC transporter%2C permease%2C 3-TM region%2C His/Glu/Gln/Arg/opine family domain protein~[E] COG4160 ABC-type arginine/histidine transport system%2C permease component	gene	gene3882	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3903
CH54_3904	CH54_3904		CH54_3904	4215955	4216773	+	ABC transporter family protein	[E] COG4598 ABC-type histidine transport system%2C ATPase component	gene	gene3883	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3904
CH54_3905	CH54_3905		CH54_3905	4216822	4217730	-	rmlD substrate binding domain protein	[R] COG1090 Predicted nucleoside-diphosphate sugar epimerase	gene	gene3884	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3905
CH54_3906	CH54_3906		CH54_3906	4218222	4218914	+	EAL domain protein	[T] COG2200 FOG: EAL domain	gene	gene3885	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3906
CH54_3907	CH54_3907		CH54_3907	4219163	4219717	+	phosphodiesterase%2C family protein	yfcE: phosphodiesterase%2C MJ0936 family protein~[R] COG0622 Predicted phosphoesterase	gene	gene3886	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3907
CH54_3908	CH54_3908		CH54_3908	4219789	4220337	+	NUDIX domain protein	[LR] COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes	gene	gene3887	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3908
CH54_3909	CH54_3909		CH54_3909	4220409	4221665	-	PTS system sugar-specific permease component family protein	[S] COG3037 Uncharacterized protein conserved in bacteria	gene	gene3888	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3909
CH54_391	CH54_391		CH54_391	410980	411300	-	ACT domain protein	[E] COG0440 Acetolactate synthase%2C small (regulatory) subunit	gene	gene389	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_391
CH54_3910	CH54_3910		CH54_3910	4221678	4221965	-	PTS system%2C Lactose/Cellobiose specific IIB subunit	[G] COG3414 Phosphotransferase system%2C galactitol-specific IIB component	gene	gene3889	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3910
CH54_3911	CH54_3911		CH54_3911	4222008	4222451	-	phosphoenolpyruvate-dependent sugar phosphotransferase system%2C EIIA 2 family protein	[GT] COG1762 Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type)	gene	gene3890	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3911
CH54_3912	CH54_3912		CH54_3912	4222697	4223731	+	bacterial regulatory s%2C lacI family protein	[K] COG1609 Transcriptional regulators	gene	gene3891	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3912
CH54_3913	CH54_3913	pta	pta	4223812	4225965	-	phosphate acetyltransferase	pta: phosphate acetyltransferase~[C] COG0280 Phosphotransacetylase	gene	gene3892	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3913
CH54_3914	CH54_3914	ackA	ackA	4226247	4227449	-	acetate kinase	ackA: acetate kinase~[C] COG0282 Acetate kinase	gene	gene3893	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3914
CH54_3915	CH54_3915		CH54_3915	4227869	4228324	+	hypothetical protein	conserved hypothetical protein~[S] COG3092 Uncharacterized protein conserved in bacteria	gene	gene3894	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3915
CH54_3916	CH54_3916		CH54_3916	4228538	4229032	+	yfbU domain protein	[S] COG3013 Uncharacterized conserved protein	gene	gene3895	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3916
CH54_3917	CH54_3917		CH54_3917	4229095	4229751	+	HAD hydrolase%2C IA%2C variant 1 family protein	HAD-SF-IA-v1: HAD hydrolase%2C IA%2C variant 1 family protein~[R] COG0637 Predicted phosphatase/phosphohexomutase	gene	gene3896	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3917
CH54_3918	CH54_3918		CH54_3918	4229799	4229984	-	hypothetical protein		gene	gene3897	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3918
CH54_3919	CH54_3919		CH54_3919	4230204	4230401	-	hypothetical protein		gene	gene3898	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3919
CH54_392	CH54_392	ilvB	ilvB	411302	412969	-	acetolactate synthase%2C large subunit%2C biosynthetic type	acolac_lg: acetolactate synthase%2C large subunit%2C biosynthetic type~[EH] COG0028 Thiamine pyrophosphate-requiring enzymes [acetolactate synthase%2C pyruvate dehydrogenase (cytochrome)%2C glyoxylate carboligase%2C phosphonopyruvate decarboxylase]	gene	gene390	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_392
CH54_3920	CH54_3920		CH54_3920	4230712	4232601	+	citrate transporter family protein	[P] COG0471 Di- and tricarboxylate transporters	gene	gene3899	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3920
CH54_3921	CH54_3921		CH54_3921	4232787	4233380	-	HD domain protein	[R] COG1896 Predicted hydrolases of HD superfamily	gene	gene3900	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3921
CH54_3922	CH54_3922		CH54_3922	4233719	4233922	-	hypothetical protein		gene	gene3901	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3922
CH54_3923	CH54_3923		CH54_3923	4234233	4235447	-	aminotransferase class I and II family protein	[E] COG0436 Aspartate/tyrosine/aromatic aminotransferase	gene	gene3902	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3923
CH54_3924	CH54_3924		CH54_3924	4236505	4237437	+	bacterial regulatory helix-turn-helix%2C lysR family protein	[K] COG0583 Transcriptional regulator	gene	gene3903	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3924
CH54_3925	CH54_3925		CH54_3925	4238113	4238613	+	NADH-ubiquinone/plastoquinone oxidoreductase%2C chain 3 family protein	[C] COG0838 NADH:ubiquinone oxidoreductase subunit 3 (chain A)	gene	gene3904	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3925
CH54_3926	CH54_3926		CH54_3926	4238715	4239392	+	NADH-quinone oxidoreductase%2C B subunit	nuoB_fam: NADH-quinone oxidoreductase%2C B subunit~[C] COG0377 NADH:ubiquinone oxidoreductase 20 kD subunit and related Fe-S oxidoreductases	gene	gene3905	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3926
CH54_3927	CH54_3927	nuoD	nuoD	4239533	4241329	+	NADH dehydrogenase (quinone)%2C D subunit	nuoD: NADH dehydrogenase (quinone)%2C D subunit~[C] COG0649 NADH:ubiquinone oxidoreductase 49 kD subunit 7	gene	gene3906	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3927
CH54_3928	CH54_3928	nuoE	nuoE	4241332	4241895	+	NADH-quinone oxidoreductase%2C E subunit	nuoE_fam: NADH-quinone oxidoreductase%2C E subunit~[C] COG1905 NADH:ubiquinone oxidoreductase 24 kD subunit	gene	gene3907	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3928
CH54_3929	CH54_3929	nuoF	nuoF	4241892	4243280	+	NADH oxidoreductase (quinone)%2C F subunit	nuoF_fam: NADH oxidoreductase (quinone)%2C F subunit~[C] COG1894 NADH:ubiquinone oxidoreductase%2C NADH-binding (51 kD) subunit	gene	gene3908	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3929
CH54_393	CH54_393		CH54_393	413537	414331	+	hypothetical protein	conserved hypothetical protein	gene	gene391	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_393
CH54_3930	CH54_3930	nuoG	nuoG	4243387	4246131	+	NADH dehydrogenase (quinone)%2C G subunit	nuoG: NADH dehydrogenase (quinone)%2C G subunit~[C] COG1034 NADH dehydrogenase/NADH:ubiquinone oxidoreductase 75 kD subunit (chain G)	gene	gene3909	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3930
CH54_3931	CH54_3931		CH54_3931	4246128	4247105	+	NADH dehydrogenase family protein	[C] COG1005 NADH:ubiquinone oxidoreductase subunit 1 (chain H)	gene	gene3910	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3931
CH54_3932	CH54_3932		CH54_3932	4247120	4247662	+	NADH-quinone oxidoreductase%2C chain I family protein	nuoI: NADH-quinone oxidoreductase%2C chain I family protein~[C] COG1143 Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I)	gene	gene3911	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3932
CH54_3933	CH54_3933		CH54_3933	4247675	4248220	+	NADH-ubiquinone/plastoquinone oxidoreductase chain 6 family protein	[C] COG0839 NADH:ubiquinone oxidoreductase subunit 6 (chain J)	gene	gene3912	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3933
CH54_3934	CH54_3934		CH54_3934	4248217	4248519	+	NADH-ubiquinone/plastoquinone oxidoreductase chain 4L family protein	[C] COG0713 NADH:ubiquinone oxidoreductase subunit 11 or 4L (chain K)	gene	gene3913	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3934
CH54_3935	CH54_3935		CH54_3935	4248516	4250360	+	proton-translocating NADH-quinone oxidoreductase%2C chain L family protein	NDH_I_L: proton-translocating NADH-quinone oxidoreductase%2C chain L family protein~[CP] COG1009 NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter%2C MnhA subunit	gene	gene3914	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3935
CH54_3936	CH54_3936		CH54_3936	4250379	4251902	+	proton-translocating NADH-quinone oxidoreductase%2C chain M family protein	NDH_I_M: proton-translocating NADH-quinone oxidoreductase%2C chain M family protein~[C] COG1008 NADH:ubiquinone oxidoreductase subunit 4 (chain M)	gene	gene3915	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3936
CH54_3937	CH54_3937		CH54_3937	4251909	4253366	+	proton-translocating NADH-quinone oxidoreductase%2C chain N family protein	NDH_I_N: proton-translocating NADH-quinone oxidoreductase%2C chain N family protein~[C] COG1007 NADH:ubiquinone oxidoreductase subunit 2 (chain N)	gene	gene3916	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3937
CH54_3938	CH54_3938		CH54_3938	4253546	4254274	+	hypothetical protein	conserved hypothetical protein	gene	gene3917	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3938
CH54_3939	CH54_3939		CH54_3939	4254422	4254913	+	hypothetical protein	conserved hypothetical protein	gene	gene3918	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3939
CH54_394	CH54_394		CH54_394	414419	415192	+	N-acetylmuramoyl-L-alanine amidase family protein	[V] COG3023 Negative regulator of beta-lactamase expression	gene	gene392	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_394
CH54_3940	CH54_3940		CH54_3940	4255089	4255556	-	yhcH/YjgK/YiaL family protein	[G] COG2731 Beta-galactosidase%2C beta subunit	gene	gene3919	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3940
CH54_3941	CH54_3941		CH54_3941	4255597	4256127	-	carbohydrate kinase%2C thermoresistant glucokinase family protein	therm_gnt_kin: carbohydrate kinase%2C thermoresistant glucokinase family protein~[G] COG3265 Gluconate kinase	gene	gene3920	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3941
CH54_3942	CH54_3942		CH54_3942	4256174	4256938	-	short chain dehydrogenase family protein	[IQR] COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)	gene	gene3921	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3942
CH54_3943	CH54_3943		CH54_3943	4257322	4258314	+	bacterial regulatory s%2C lacI family protein	[K] COG1609 Transcriptional regulators	gene	gene3922	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3943
CH54_3944	CH54_3944		CH54_3944	4258695	4259660	+	D-isomer specific 2-hydroxyacid dehydrogenase%2C NAD binding domain protein	[CHR] COG1052 Lactate dehydrogenase and related dehydrogenases	gene	gene3923	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3944
CH54_3945	CH54_3945		CH54_3945	4259837	4261153	+	major Facilitator Superfamily protein	[GEPR] COG0477 Permeases of the major facilitator superfamily	gene	gene3924	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3945
CH54_3946	CH54_3946		CH54_3946	4261215	4261721	+	hypothetical protein	conserved hypothetical protein~[S] COG4702 Uncharacterized conserved protein	gene	gene3925	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3946
CH54_3947	CH54_3947	edd	edd	4261731	4263545	+	phosphogluconate dehydratase	edd: phosphogluconate dehydratase~[EG] COG0129 Dihydroxyacid dehydratase/phosphogluconate dehydratase	gene	gene3926	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3947
CH54_3948	CH54_3948		CH54_3948	4263805	4264113	+	hypothetical protein	conserved hypothetical protein~[S] COG4575 Uncharacterized conserved protein	gene	gene3927	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3948
CH54_3949	CH54_3949		CH54_3949	4264549	4266840	+	outer membrane autotransporter barrel domain protein	autotrans_barl: outer membrane autotransporter barrel domain protein~[MU] COG3468 Type V secretory pathway%2C adhesin AidA	gene	gene3928	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3949
CH54_395	CH54_395		CH54_395	415286	417817	-	bacterial virulence factor family protein	[S] COG4458 Uncharacterized protein conserved in bacteria%2C putative virulence factor	gene	gene393	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_395
CH54_3950	CH54_3950		CH54_3950	4267013	4268407	+	isochorismate synthase family protein	isochor_syn: isochorismate synthase family protein~[HQ] COG1169 Isochorismate synthase	gene	gene3929	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3950
CH54_3951	CH54_3951	menD	menD	4268580	4270253	+	2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase	menD: 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase~[H] COG1165 2-succinyl-6-hydroxy-2%2C4-cyclohexadiene-1-carboxylate synthase	gene	gene3930	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3951
CH54_3952	CH54_3952	menH	menH	4270250	4271056	+	2-succinyl-6-hydroxy-2%2C4-cyclohexadiene-1-carboxylate synthase	menH_SHCHC: 2-succinyl-6-hydroxy-2%2C4-cyclohexadiene-1-carboxylate synthase~[R] COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily)	gene	gene3931	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3952
CH54_3953	CH54_3953	menB	menB	4271070	4271927	+	naphthoate synthase	menB: naphthoate synthase~[H] COG0447 Dihydroxynaphthoic acid synthase	gene	gene3932	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3953
CH54_3954	CH54_3954	menC	menC	4271927	4272898	+	o-succinylbenzoate synthase	menC_gamma/gm+: o-succinylbenzoate synthase~[H] COG1441 O-succinylbenzoate synthase	gene	gene3933	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3954
CH54_3955	CH54_3955	menE	menE	4272886	4274313	+	O-succinylbenzoate-CoA ligase	menE: O-succinylbenzoate-CoA ligase~[IQ] COG0318 Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II	gene	gene3934	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3955
CH54_3956	CH54_3956		CH54_3956	4274959	4276398	-	catalase family protein	[P] COG0753 Catalase	gene	gene3935	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3956
CH54_3957	CH54_3957		CH54_3957	4276958	4277500	+	yfaZ family protein		gene	gene3936	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3957
CH54_3958	CH54_3958		CH54_3958	4277573	4278781	-	aromatic amino acid transport family protein	araaP: aromatic amino acid transport family protein~[E] COG0814 Amino acid permeases	gene	gene3937	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3958
CH54_3959	CH54_3959		CH54_3959	4279011	4280204	+	molybdenum cofactor synthesis domain protein	molyb_syn: molybdenum cofactor synthesis domain protein~[R] COG1058 Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA	gene	gene3938	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3959
CH54_396	CH54_396		CH54_396	417814	420843	-	virulence factor SrfB family protein	[S] COG4457 Uncharacterized protein conserved in bacteria%2C putative virulence factor	gene	gene394	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_396
CH54_3960	CH54_3960		CH54_3960	4280272	4280778	-	ecotin family protein	[R] COG4574 Serine protease inhibitor ecotin	gene	gene3939	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3960
CH54_3961	CH54_3961		CH54_3961	4280998	4281303	-	2Fe-2S iron-sulfur cluster binding domain protein	[C] COG0633 Ferredoxin	gene	gene3940	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3961
CH54_3962	CH54_3962		CH54_3962	4281383	4282513	-	ribonucleotide reductase%2C small chain family protein	[F] COG0208 Ribonucleotide reductase%2C beta subunit	gene	gene3941	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3962
CH54_3963	CH54_3963		CH54_3963	4282588	4284873	-	ribonucleoside-diphosphate reductase%2C alpha subunit	nrdE_NrdA: ribonucleoside-diphosphate reductase%2C alpha subunit~[F] COG0209 Ribonucleotide reductase%2C alpha subunit	gene	gene3942	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3963
CH54_3964	CH54_3964	ubiG	ubiG	4285367	4286113	-	3-demethylubiquinone-9 3-O-methyltransferase	ubiG: 3-demethylubiquinone-9 3-O-methyltransferase~[H] COG2227 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1%2C4-benzoquinol methylase	gene	gene3943	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3964
CH54_3965	CH54_3965	gyrA	gyrA	4286316	4288982	+	DNA gyrase%2C A subunit	gyrA: DNA gyrase%2C A subunit~[L] COG0188 Type IIA topoisomerase (DNA gyrase/topo II%2C topoisomerase IV)%2C A subunit	gene	gene3944	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3965
CH54_3966	CH54_3966		CH54_3966	4289181	4291979	+	rcsC Alpha-Beta-Loop family protein	[T] COG0642 Signal transduction histidine kinase	gene	gene3945	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3966
CH54_3967	CH54_3967		CH54_3967	4292207	4292854	-	bacterial regulatory s%2C luxR family protein	[TK] COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain	gene	gene3946	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3967
CH54_3968	CH54_3968		CH54_3968	4292857	4295550	-	hpt domain protein	[T] COG0642 Signal transduction histidine kinase	gene	gene3947	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3968
CH54_3969	CH54_3969		CH54_3969	4295573	4296838	-	major Facilitator Superfamily protein	[GEPR] COG0477 Permeases of the major facilitator superfamily	gene	gene3948	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3969
CH54_397	CH54_397		CH54_397	420848	422179	-	hypothetical protein		gene	gene395	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_397
CH54_3970	CH54_3970		CH54_3970	4297421	4310143	+	bacterial Ig-like domain family protein		gene	gene3949	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3970
CH54_3971	CH54_3971		CH54_3971	4310206	4311591	+	type I secretion outer membrane%2C TolC family protein	type_I_sec_TolC: type I secretion outer membrane%2C TolC family protein~[MU] COG1538 Outer membrane protein	gene	gene3950	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3971
CH54_3972	CH54_3972		CH54_3972	4311667	4313802	+	type I secretion system ATPase family protein	type_I_sec_LssB: type I secretion system ATPase family protein~[V] COG2274 ABC-type bacteriocin/lantibiotic exporters%2C contain an N-terminal double-glycine peptidase domain	gene	gene3951	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3972
CH54_3973	CH54_3973		CH54_3973	4313815	4314984	+	type I secretion membrane fusion%2C HlyD family protein	type_I_hlyD: type I secretion membrane fusion%2C HlyD family protein~[M] COG0845 Membrane-fusion protein	gene	gene3952	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3973
CH54_3974	CH54_3974		CH54_3974	4315651	4316754	+	gram-negative porin family protein	[M] COG3203 Outer membrane protein (porin)	gene	gene3953	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3974
CH54_3975	CH54_3975		CH54_3975	4316988	4317075	+	tRNA-Ser		tRNA	gene3954	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3975
CH54_3976	CH54_3976		CH54_3976	4317082	4317157	+	tRNA-Thr		tRNA	gene3955	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3976
CH54_3977	CH54_3977		CH54_3977	4317249	4318391	-	beta-lactamase family protein	[V] COG1680 Beta-lactamase class C and other penicillin binding proteins	gene	gene3956	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3977
CH54_3978	CH54_3978		CH54_3978	4318558	4320084	-	MFS/sugar transport family protein	[G] COG2211 Na+/melibiose symporter and related transporters	gene	gene3957	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3978
CH54_3979	CH54_3979		CH54_3979	4320534	4321523	+	beta-lactamase superfamily domain protein	[R] COG2220 Predicted Zn-dependent hydrolases of the beta-lactamase fold	gene	gene3958	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3979
CH54_398	CH54_398	amn	amn	422457	423917	+	AMP nucleosidase	AMP-nucleosdse: AMP nucleosidase~[F] COG0775 Nucleoside phosphorylase	gene	gene396	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_398
CH54_3980	CH54_3980		CH54_3980	4321584	4323371	-	methyl-accepting chemotaxis (MCP) signaling domain protein	[NT] COG0840 Methyl-accepting chemotaxis protein	gene	gene3959	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3980
CH54_3981	CH54_3981		CH54_3981	4323704	4324639	-	omptin family protein	[M] COG4571 Outer membrane protease	gene	gene3960	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3981
CH54_3982	CH54_3982		CH54_3982	4324812	4325054	-	dinI-like family protein		gene	gene3961	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3982
CH54_3983	CH54_3983		CH54_3983	4325475	4325753	+	putative bacteriophage protein		gene	gene3962	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3983
CH54_3984	CH54_3984		CH54_3984	4326125	4326865	+	SIS domain protein	[K] COG1737 Transcriptional regulators	gene	gene3963	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3984
CH54_3985	CH54_3985		CH54_3985	4327033	4328574	+	phosphotransferase system%2C EIIB family protein	[G] COG1263 Phosphotransferase system IIC components%2C glucose/maltose/N-acetylglucosamine-specific	gene	gene3964	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3985
CH54_3986	CH54_3986		CH54_3986	4328662	4330098	+	glycosyl hydrolase 1 family protein	[G] COG2723 Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase	gene	gene3965	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3986
CH54_3987	CH54_3987		CH54_3987	4330406	4330482	-	tRNA-Pro		tRNA	gene3966	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3987
CH54_3988	CH54_3988		CH54_3988	4330580	4332373	-	type I phosphodiesterase / nucleotide pyrophosphatase family protein	[R] COG3083 Predicted hydrolase of alkaline phosphatase superfamily	gene	gene3967	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3988
CH54_3989	CH54_3989		CH54_3989	4332401	4332628	-	hypothetical protein	conserved hypothetical protein~[S] COG3082 Uncharacterized protein conserved in bacteria	gene	gene3968	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3989
CH54_399	CH54_399		CH54_399	424070	424198	-	putative lipoprotein		gene	gene397	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_399
CH54_3990	CH54_3990		CH54_3990	4332806	4333810	+	37-kD nucleoid-associated bacterial family protein	[R] COG3081 Nucleoid-associated protein	gene	gene3969	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3990
CH54_3991	CH54_3991		CH54_3991	4333902	4334186	-	ribosomal L25p family protein	[J] COG1825 Ribosomal protein L25 (general stress protein Ctc)	gene	gene3970	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3991
CH54_3992	CH54_3992		CH54_3992	4334348	4336120	-	DEAD/DEAH box helicase family protein	[KL] COG1061 DNA or RNA helicases of superfamily II	gene	gene3971	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3992
CH54_3993	CH54_3993		CH54_3993	4336479	4337186	+	pseudouridine synthase family protein	[J] COG1187 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases	gene	gene3972	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3993
CH54_3994	CH54_3994		CH54_3994	4337277	4338497	+	drug resistance transporter%2C Bcr/CflA subfamily protein	efflux_Bcr_CflA: drug resistance transporter%2C Bcr/CflA subfamily protein~[GEPR] COG0477 Permeases of the major facilitator superfamily	gene	gene3973	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3994
CH54_3995	CH54_3995		CH54_3995	4339210	4339557	+	yejG-like family protein		gene	gene3974	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3995
CH54_3996	CH54_3996	nikE	nikE	4339629	4341221	-	nickel import ATP-binding protein NikE	nickel_nikE: nickel import ATP-binding protein NikE~[R] COG4172 ABC-type uncharacterized transport system%2C duplicated ATPase component	gene	gene3975	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3996
CH54_3997	CH54_3997		CH54_3997	4341223	4342251	-	binding--dependent transport system inner membrane component family protein	[R] COG4239 ABC-type uncharacterized transport system%2C permease component	gene	gene3976	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3997
CH54_3998	CH54_3998		CH54_3998	4342248	4343348	-	binding--dependent transport system inner membrane component family protein	[R] COG4174 ABC-type uncharacterized transport system%2C permease component	gene	gene3977	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3998
CH54_3999	CH54_3999		CH54_3999	4343357	4345165	-	bacterial extracellular solute-binding s%2C 5 Middle family protein	[E] COG4166 ABC-type oligopeptide transport system%2C periplasmic component	gene	gene3978	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_3999
CH54_4	CH54_4		CH54_4	4225	5877	+	mce related family protein	[R] COG3008 Paraquat-inducible protein B	gene	gene3	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_4
CH54_40	CH54_40	nrfD	nrfD	42283	43248	+	cytochrome c nitrite reductase%2C NrfD subunit	cyt_nit_nrfD: cytochrome c nitrite reductase%2C NrfD subunit~[P] COG3301 Formate-dependent nitrite reductase%2C membrane component	gene	gene39	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_40
CH54_400	CH54_400		CH54_400	424445	425203	+	amidinotransferase family protein	[E] COG1834 N-Dimethylarginine dimethylaminohydrolase	gene	gene398	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_400
CH54_4000	CH54_4000		CH54_4000	4345264	4346826	-	EAL domain protein	[T] COG2200 FOG: EAL domain	gene	gene3979	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_4000
CH54_4001	CH54_4001		CH54_4001	4347331	4347915	-	nlpC/P60 family protein	[M] COG0791 Cell wall-associated hydrolases (invasion-associated proteins)	gene	gene3980	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_4001
CH54_4002	CH54_4002		CH54_4002	4348771	4349754	-	cobW/HypB/UreG%2C nucleotide-binding domain protein	[R] COG0523 Putative GTPases (G3E family)	gene	gene3981	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_4002
CH54_4003	CH54_4003		CH54_4003	4350070	4350396	+	hypothetical protein		gene	gene3982	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_4003
CH54_4004	CH54_4004		CH54_4004	4350606	4351349	+	bacterial regulatory s%2C gntR family protein	[K] COG2186 Transcriptional regulators	gene	gene3983	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_4004
CH54_4005	CH54_4005		CH54_4005	4351454	4352926	-	mannitol dehydrogenase Rossmann domain protein	[G] COG0246 Mannitol-1-phosphate/altronate dehydrogenases	gene	gene3984	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_4005
CH54_4006	CH54_4006	uxuA	uxuA	4353327	4354517	+	mannonate dehydratase	uxuA: mannonate dehydratase~[G] COG1312 D-mannonate dehydratase	gene	gene3985	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_4006
CH54_4007	CH54_4007		CH54_4007	4354784	4355356	-	elongation factor P (EF-P) OB domain protein	[J] COG0231 Translation elongation factor P (EF-P)/translation initiation factor 5A (eIF-5A)	gene	gene3986	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_4007
CH54_4008	CH54_4008		CH54_4008	4355586	4356830	-	aromatic amino acid transport family protein	araaP: aromatic amino acid transport family protein~[E] COG0814 Amino acid permeases	gene	gene3987	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_4008
CH54_4009	CH54_4009		CH54_4009	4357605	4357844	-	hypothetical protein	[C] COG0243 Anaerobic dehydrogenases%2C typically selenocysteine-containing	gene	gene3989	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_4009
CH54_401	CH54_401		CH54_401	425259	426035	+	lysine-arginine-ornithine-binding periplasmic family protein	3A0103s03R: lysine-arginine-ornithine-binding periplasmic family protein~[ET] COG0834 ABC-type amino acid transport/signal transduction systems%2C periplasmic component/domain	gene	gene399	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_401
CH54_4010	CH54_4010		CH54_4010	4357354	4357608	+	putative zinc-/iron-chelating domain protein	[R] COG0727 Predicted Fe-S-cluster oxidoreductase	gene	gene3988	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_4010
CH54_4011	CH54_4011		CH54_4011	4358003	4358425	-	NUDIX domain protein	[F] COG1051 ADP-ribose pyrophosphatase	gene	gene3990	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_4011
CH54_4012	CH54_4012		CH54_4012	4358686	4359822	+	phosphocarrier%2C HPr family protein	PTS_HPr_: phosphocarrier%2C HPr family protein~[G] COG4668 Mannitol/fructose-specific phosphotransferase system%2C IIA domain	gene	gene3991	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_4012
CH54_4013	CH54_4013	pfkB	pfkB	4359819	4360757	+	1-phosphofructokinase	pfkB: 1-phosphofructokinase~[G] COG1105 Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB)	gene	gene3992	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_4013
CH54_4014	CH54_4014		CH54_4014	4360772	4362448	+	PTS system%2C Fru family%2C IIB component domain protein	FRU: PTS system%2C Fru family%2C IIB component domain protein~[G] COG1299 Phosphotransferase system%2C fructose-specific IIC component	gene	gene3993	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_4014
CH54_4015	CH54_4015		CH54_4015	4362517	4363359	-	apurinic endonuclease family protein	nfo: apurinic endonuclease family protein~[L] COG0648 Endonuclease IV	gene	gene3994	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_4015
CH54_4016	CH54_4016		CH54_4016	4363489	4364571	-	hypothetical protein	conserved hypothetical family protein~[S] COG2855 Predicted membrane protein	gene	gene3995	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_4016
CH54_4017	CH54_4017		CH54_4017	4364761	4364961	-	hypothetical protein		gene	gene3996	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_4017
CH54_4018	CH54_4018		CH54_4018	4365498	4366940	-	SH3 domain of SH3b2 type family protein	[M] COG0791 Cell wall-associated hydrolases (invasion-associated proteins)	gene	gene3997	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_4018
CH54_4019	CH54_4019		CH54_4019	4367043	4367336	+	hypothetical protein		gene	gene3998	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_4019
CH54_402	CH54_402		CH54_402	426115	426807	+	amino ABC transporter%2C permease%2C 3-TM region%2C His/Glu/Gln/Arg/opine family domain protein	HEQRo_perm_3TM: amino ABC transporter%2C permease%2C 3-TM region%2C His/Glu/Gln/Arg/opine family domain protein~[E] COG4215 ABC-type arginine transport system%2C permease component	gene	gene400	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_402
CH54_4020	CH54_4020		CH54_4020	4367524	4368396	+	bacterial regulatory helix-turn-helix%2C lysR family protein	[K] COG0583 Transcriptional regulator	gene	gene3999	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_4020
CH54_4021	CH54_4021		CH54_4021	4368640	4370166	+	amino acid permease family protein	[E] COG0833 Amino acid transporters	gene	gene4000	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_4021
CH54_4022	CH54_4022		CH54_4022	4370441	4370809	+	fecCD transport family protein	[P] COG0609 ABC-type Fe3+-siderophore transport system%2C permease component	gene	gene4001	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_4022
CH54_4023	CH54_4023		CH54_4023	4370968	4372941	+	tonB dependent receptor family protein	[P] COG4771 Outer membrane receptor for ferrienterochelin and colicins	gene	gene4002	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_4023
CH54_4024	CH54_4024		CH54_4024	4373261	4373881	-	hypothetical protein	glutathione S-transferase%2C N-terminal domain protein~[O] COG0625 Glutathione S-transferase	gene	gene4003	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_4024
CH54_4025	CH54_4025		CH54_4025	4373900	4374559	-	HAD phosphoserine phosphatase-like hydrolase%2C IB family protein	HAD-SF-IB: HAD phosphoserine phosphatase-like hydrolase%2C IB family protein~[E] COG0560 Phosphoserine phosphatase	gene	gene4004	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_4025
CH54_4026	CH54_4026		CH54_4026	4374985	4375107	+	hypothetical protein	conserved hypothetical protein	gene	gene4005	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_4026
CH54_4027	CH54_4027		CH54_4027	4375070	4376137	+	2OG-Fe(II) oxygenase superfamily protein	[R] COG3491 Isopenicillin N synthase and related dioxygenases	gene	gene4006	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_4027
CH54_4028	CH54_4028		CH54_4028	4376174	4376998	+	NLPA lipofamily protein	[P] COG1464 ABC-type metal ion transport system%2C periplasmic component/surface antigen	gene	gene4007	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_4028
CH54_4029	CH54_4029		CH54_4029	4376995	4377981	+	ABC transporter family protein	[P] COG1135 ABC-type metal ion transport system%2C ATPase component	gene	gene4008	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_4029
CH54_403	CH54_403		CH54_403	426807	427529	+	amino ABC transporter%2C permease%2C 3-TM region%2C His/Glu/Gln/Arg/opine family domain protein	HEQRo_perm_3TM: amino ABC transporter%2C permease%2C 3-TM region%2C His/Glu/Gln/Arg/opine family domain protein~[E] COG4160 ABC-type arginine/histidine transport system%2C permease component	gene	gene401	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_403
CH54_4030	CH54_4030		CH54_4030	4377978	4378649	+	binding--dependent transport system inner membrane component family protein	[P] COG2011 ABC-type metal ion transport system%2C permease component	gene	gene4009	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_4030
CH54_4031	CH54_4031		CH54_4031	4378783	4379139	+	hypothetical protein	conserved hypothetical protein	gene	gene4010	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_4031
CH54_4032	CH54_4032		CH54_4032	4379153	4379593	+	helix-turn-helix family protein	[K] COG2944 Predicted transcriptional regulator	gene	gene4011	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_4032
CH54_4033	CH54_4033		CH54_4033	4379657	4380802	-	cys/Met metabolism PLP-dependent enzyme family protein	[E] COG0626 Cystathionine beta-lyases/cystathionine gamma-synthases	gene	gene4012	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_4033
CH54_4034	CH54_4034		CH54_4034	4380828	4382195	-	CBS domain protein	[E] COG0031 Cysteine synthase	gene	gene4013	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_4034
CH54_4035	CH54_4035		CH54_4035	4382492	4383805	+	D-alanyl-D-alanine carboxypeptidase family protein	[M] COG1686 D-alanyl-D-alanine carboxypeptidase	gene	gene4014	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_4035
CH54_4036	CH54_4036		CH54_4036	4384047	4385414	-	L-serine ammonia-lyase	sda_mono: L-serine ammonia-lyase~[E] COG1760 L-serine deaminase	gene	gene4015	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_4036
CH54_4037	CH54_4037	stp	stp	4385679	4386974	-	serine transporter family protein	stp: serine transporter family protein~[E] COG0814 Amino acid permeases	gene	gene4016	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_4037
CH54_4038	CH54_4038		CH54_4038	4387989	4388753	-	deoR-like helix-turn-helix domain protein	[KG] COG1349 Transcriptional regulators of sugar metabolism	gene	gene4017	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_4038
CH54_4039	CH54_4039	deoC	deoC	4388948	4389619	-	deoxyribose-phosphate aldolase	deoC: deoxyribose-phosphate aldolase~[F] COG0274 Deoxyribose-phosphate aldolase	gene	gene4018	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_4039
CH54_404	CH54_404		CH54_404	427569	428024	-	asnC-type helix-turn-helix domain protein	[K] COG1522 Transcriptional regulators	gene	gene402	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_404
CH54_4040	CH54_4040		CH54_4040	4389871	4390479	-	PAP2 superfamily protein	[I] COG0671 Membrane-associated phospholipid phosphatase	gene	gene4019	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_4040
CH54_4041	CH54_4041		CH54_4041	4390476	4391108	-	PAP2 superfamily protein	[R] COG3907 PAP2 (acid phosphatase) superfamily protein	gene	gene4020	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_4041
CH54_4042	CH54_4042		CH54_4042	4391523	4393211	-	AspT/YidE/YbjL antiporter duplication domain protein	yidE_YbjL_dupl: AspT/YidE/YbjL antiporter duplication domain protein~[R] COG2985 Predicted permease	gene	gene4021	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_4042
CH54_4043	CH54_4043	grxA	grxA	4393624	4393887	-	glutaredoxin%2C GrxA family	GRXA: glutaredoxin%2C GrxA family~[O] COG0695 Glutaredoxin and related proteins	gene	gene4022	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_4043
CH54_4044	CH54_4044		CH54_4044	4394136	4394444	+	hypothetical protein	conserved hypothetical protein	gene	gene4023	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_4044
CH54_4045	CH54_4045		CH54_4045	4394563	4395048	+	bacterial sensory transduction regulator family protein		gene	gene4024	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_4045
CH54_4046	CH54_4046		CH54_4046	4395464	4396573	+	bacterial extracellular solute-binding family protein	[E] COG0687 Spermidine/putrescine-binding periplasmic protein	gene	gene4025	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_4046
CH54_4047	CH54_4047		CH54_4047	4396741	4397874	+	polyamine ABC transporter%2C ATP-binding family protein	potA: polyamine ABC transporter%2C ATP-binding family protein~[E] COG3842 ABC-type spermidine/putrescine transport systems%2C ATPase components	gene	gene4026	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_4047
CH54_4048	CH54_4048		CH54_4048	4397897	4398862	+	binding--dependent transport system inner membrane component family protein	[E] COG1176 ABC-type spermidine/putrescine transport system%2C permease component I	gene	gene4027	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_4048
CH54_4049	CH54_4049		CH54_4049	4398859	4399704	+	binding--dependent transport system inner membrane component family protein	[E] COG1177 ABC-type spermidine/putrescine transport system%2C permease component II	gene	gene4028	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_4049
CH54_405	CH54_405		CH54_405	428039	429148	+	zinc carboxypeptidase family protein	[R] COG3608 Predicted deacylase	gene	gene403	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_405
CH54_4050	CH54_4050		CH54_4050	4399890	4400351	+	hypothetical protein	conserved hypothetical protein	gene	gene4029	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_4050
CH54_4051	CH54_4051	rumA	rumA	4400456	4401586	+	23S rRNA (uracil-5-)-methyltransferase RumA	rumA: 23S rRNA (uracil-5-)-methyltransferase RumA~[J] COG2265 SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase	gene	gene4030	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_4051
CH54_4052	CH54_4052		CH54_4052	4402106	4402837	-	lysine-arginine-ornithine-binding periplasmic family protein	3A0103s03R: lysine-arginine-ornithine-binding periplasmic family protein~[ET] COG0834 ABC-type amino acid transport/signal transduction systems%2C periplasmic component/domain	gene	gene4031	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_4052
CH54_4053	CH54_4053		CH54_4053	4403674	4404342	-	amino ABC transporter%2C permease%2C 3-TM region%2C His/Glu/Gln/Arg/opine family domain protein	HEQRo_perm_3TM: amino ABC transporter%2C permease%2C 3-TM region%2C His/Glu/Gln/Arg/opine family domain protein~[E] COG4160 ABC-type arginine/histidine transport system%2C permease component	gene	gene4032	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_4053
CH54_4054	CH54_4054		CH54_4054	4404342	4405058	-	amino ABC transporter%2C permease%2C 3-TM region%2C His/Glu/Gln/Arg/opine family domain protein	HEQRo_perm_3TM: amino ABC transporter%2C permease%2C 3-TM region%2C His/Glu/Gln/Arg/opine family domain protein~[E] COG4215 ABC-type arginine transport system%2C permease component	gene	gene4033	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_4054
CH54_4055	CH54_4055		CH54_4055	4405070	4405801	-	lysine-arginine-ornithine-binding periplasmic family protein	3A0103s03R: lysine-arginine-ornithine-binding periplasmic family protein~[ET] COG0834 ABC-type amino acid transport/signal transduction systems%2C periplasmic component/domain	gene	gene4034	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_4055
CH54_4056	CH54_4056		CH54_4056	4405822	4406601	-	ABC transporter family protein	[E] COG4161 ABC-type arginine transport system%2C ATPase component	gene	gene4035	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_4056
CH54_4057	CH54_4057		CH54_4057	4407024	4407599	-	putative lipoprotein		gene	gene4036	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_4057
CH54_4058	CH54_4058		CH54_4058	4407673	4408680	-	3-beta hydroxysteroid dehydrogenase/isomerase family protein	[MG] COG0451 Nucleoside-diphosphate-sugar epimerases	gene	gene4037	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_4058
CH54_4059	CH54_4059		CH54_4059	4408867	4410306	-	3-beta hydroxysteroid dehydrogenase/isomerase family protein	[MG] COG0702 Predicted nucleoside-diphosphate-sugar epimerases	gene	gene4038	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_4059
CH54_406	CH54_406		CH54_406	429152	430285	-	FAD dependent oxidoreductase family protein	[R] COG0446 Uncharacterized NAD(FAD)-dependent dehydrogenases	gene	gene404	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_406
CH54_4060	CH54_4060		CH54_4060	4410303	4411322	-	beta-eliminating lyase family protein	[E] COG2008 Threonine aldolase	gene	gene4039	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_4060
CH54_4061	CH54_4061		CH54_4061	4411400	4412287	-	methyltransferase%2C family protein	methyltransferase%2C TIGR00027 family protein~mthyl_TIGR00027: methyltransferase%2C TIGR00027 family protein~[Q] COG3315 O-Methyltransferase involved in polyketide biosynthesis	gene	gene4040	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_4061
CH54_4062	CH54_4062		CH54_4062	4412517	4414238	-	thiamine pyrophosphate enzyme%2C central domain protein	[EH] COG0028 Thiamine pyrophosphate-requiring enzymes [acetolactate synthase%2C pyruvate dehydrogenase (cytochrome)%2C glyoxylate carboligase%2C phosphonopyruvate decarboxylase]	gene	gene4041	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_4062
CH54_4063	CH54_4063		CH54_4063	4414349	4415371	-	2Fe-2S iron-sulfur cluster binding domain protein	[C] COG1018 Flavodoxin reductases (ferredoxin-NADPH reductases) family 1	gene	gene4042	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_4063
CH54_4064	CH54_4064	hcp	hcp	4415468	4417120	-	hydroxylamine reductase	hybrid_clust: hydroxylamine reductase~[C] COG1151 6Fe-6S prismane cluster-containing protein	gene	gene4043	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_4064
CH54_4065	CH54_4065		CH54_4065	4417318	4418217	-	hypothetical protein	conserved hypothetical protein~[S] COG2431 Predicted membrane protein	gene	gene4044	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_4065
CH54_4066	CH54_4066		CH54_4066	4418448	4420109	+	AAA domain protein	[L] COG3593 Predicted ATP-dependent endonuclease of the OLD family	gene	gene4045	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_4066
CH54_4067	CH54_4067		CH54_4067	4420124	4421077	-	hypothetical protein	conserved hypothetical protein~[S] COG2990 Uncharacterized protein conserved in bacteria	gene	gene4046	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_4067
CH54_4068	CH54_4068		CH54_4068	4421266	4422378	+	efflux transporter%2C RND family%2C MFP subunit	RND_mfp: efflux transporter%2C RND family%2C MFP subunit~[M] COG0845 Membrane-fusion protein	gene	gene4047	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_4068
CH54_4069	CH54_4069		CH54_4069	4422378	4424327	+	ABC transporter family protein	[V] COG0577 ABC-type antimicrobial peptide transport system%2C permease component	gene	gene4048	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_4069
CH54_407	CH54_407		CH54_407	430297	431754	-	flavodoxin family protein	[C] COG0426 Uncharacterized flavoproteins	gene	gene405	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_407
CH54_4070	CH54_4070	cspD	cspD	4424526	4424783	-	cold shock domain protein CspD	cspD: cold shock domain protein CspD~[K] COG1278 Cold shock proteins	gene	gene4049	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_4070
CH54_4071	CH54_4071		CH54_4071	4425143	4425463	+	ATP-dependent Clp protease adaptor ClpS family protein	[S] COG2127 Uncharacterized conserved protein	gene	gene4050	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_4071
CH54_4072	CH54_4072	clpA	clpA	4425489	4427765	+	ATP-dependent Clp protease ATP-binding subunit ClpA	clpA: ATP-dependent Clp protease ATP-binding subunit ClpA~[O] COG0542 ATPases with chaperone activity%2C ATP-binding subunit	gene	gene4051	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_4072
CH54_4073	CH54_4073	infA	infA	4428010	4428228	-	translation initiation factor IF-1	infA: translation initiation factor IF-1~[J] COG0361 Translation initiation factor 1 (IF-1)	gene	gene4052	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_4073
CH54_4074	CH54_4074	aat	aat	4428394	4429104	-	leucyl/phenylalanyl-tRNA--protein transferase	aat: leucyl/phenylalanyl-tRNA--protein transferase~[O] COG2360 Leu/Phe-tRNA-protein transferase	gene	gene4053	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_4074
CH54_4075	CH54_4075	cydC	cydC	4429533	4431257	-	thiol reductant ABC exporter%2C CydC subunit	cydC: thiol reductant ABC exporter%2C CydC subunit~[CO] COG4987 ABC-type transport system involved in cytochrome bd biosynthesis%2C fused ATPase and permease components	gene	gene4054	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_4075
CH54_4076	CH54_4076	cydD	cydD	4431260	4433026	-	thiol reductant ABC exporter%2C CydD subunit	cydD: thiol reductant ABC exporter%2C CydD subunit~[CO] COG4988 ABC-type transport system involved in cytochrome bd biosynthesis%2C ATPase and permease components	gene	gene4055	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_4076
CH54_4077	CH54_4077		CH54_4077	4433141	4433260	+	hypothetical protein	conserved hypothetical protein	gene	gene4056	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_4077
CH54_4078	CH54_4078	trxB	trxB	4433296	4434258	-	thioredoxin-disulfide reductase	TRX_reduct: thioredoxin-disulfide reductase~[O] COG0492 Thioredoxin reductase	gene	gene4057	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_4078
CH54_4079	CH54_4079		CH54_4079	4434768	4434869	-	hypothetical protein		gene	gene4058	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_4079
CH54_408	CH54_408		CH54_408	431917	433464	+	AAA domain family protein	[KT] COG3604 Transcriptional regulator containing GAF%2C AAA-type ATPase%2C and DNA binding domains	gene	gene406	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_408
CH54_4080	CH54_4080		CH54_4080	4435027	4435521	+	asnC-type helix-turn-helix domain protein	[K] COG1522 Transcriptional regulators	gene	gene4059	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_4080
CH54_4081	CH54_4081		CH54_4081	4435643	4439239	+	ftsK/SpoIIIE family protein	[D] COG1674 DNA segregation ATPase FtsK/SpoIIIE and related proteins	gene	gene4060	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_4081
CH54_4082	CH54_4082	lolA	lolA	4439499	4440110	+	outer membrane lipocarrier protein LolA	lolA: outer membrane lipocarrier protein LolA~[M] COG2834 Outer membrane lipoprotein-sorting protein	gene	gene4061	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_4082
CH54_4083	CH54_4083		CH54_4083	4440118	4441461	+	sigma-54 interaction domain protein	[L] COG2256 ATPase related to the helicase subunit of the Holliday junction resolvase	gene	gene4062	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_4083
CH54_4084	CH54_4084	serS	serS	4441633	4442925	+	serine--tRNA ligase	serS: serine--tRNA ligase~[J] COG0172 Seryl-tRNA synthetase	gene	gene4063	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_4084
CH54_4085	CH54_4085		CH54_4085	4443144	4444292	+	sugar (and other) transporter family protein	[GEPR] COG0477 Permeases of the major facilitator superfamily	gene	gene4064	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_4085
CH54_4086	CH54_4086	pflA	pflA	4444369	4445109	-	pyruvate formate-lyase 1-activating enzyme	PFLA: pyruvate formate-lyase 1-activating enzyme~[O] COG1180 Pyruvate-formate lyase-activating enzyme	gene	gene4065	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_4086
CH54_4087	CH54_4087	pflB	pflB	4445188	4447470	-	formate acetyltransferase	pyr_form_ly_1: formate acetyltransferase~[C] COG1882 Pyruvate-formate lyase	gene	gene4066	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_4087
CH54_4088	CH54_4088	focA	focA	4447523	4448380	-	formate transporter FocA	formate_focA: formate transporter FocA~[P] COG2116 Formate/nitrite family of transporters	gene	gene4067	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_4088
CH54_4089	CH54_4089		CH54_4089	4448924	4450690	-	ycaO-type kinase domain protein	[S] COG1944 Uncharacterized conserved protein	gene	gene4068	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_4089
CH54_409	CH54_409		CH54_409	433530	434378	-	hypothetical protein	glutathione S-transferase%2C N-terminal domain protein~[O] COG0625 Glutathione S-transferase	gene	gene407	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_409
CH54_4090	CH54_4090		CH54_4090	4450839	4451876	+	L-asparaginase%2C type II family protein	asnASE_II: L-asparaginase%2C type II family protein~[EJ] COG0252 L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D	gene	gene4069	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_4090
CH54_4091	CH54_4091		CH54_4091	4452022	4452714	+	hypothetical protein	conserved hypothetical protein~[S] COG2323 Predicted membrane protein	gene	gene4070	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_4091
CH54_4092	CH54_4092	serC	serC	4452917	4454002	+	phosphoserine transaminase	serC_1: phosphoserine transaminase~[HE] COG1932 Phosphoserine aminotransferase	gene	gene4071	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_4092
CH54_4093	CH54_4093	aroA	aroA	4454101	4455387	+	3-phosphoshikimate 1-carboxyvinyltransferase	aroA: 3-phosphoshikimate 1-carboxyvinyltransferase~[E] COG0128 5-enolpyruvylshikimate-3-phosphate synthase	gene	gene4072	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_4093
CH54_4094	CH54_4094	cmk	cmk	4455687	4456379	+	cytidylate kinase	cmk: cytidylate kinase~[F] COG0283 Cytidylate kinase	gene	gene4073	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_4094
CH54_4095	CH54_4095	rpsA	rpsA	4456548	4458221	+	ribosomal protein S1	rpsA: ribosomal protein S1~[J] COG0539 Ribosomal protein S1	gene	gene4074	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_4095
CH54_4096	CH54_4096	ihfB	ihfB	4458282	4458566	+	integration host factor%2C beta subunit	hip: integration host factor%2C beta subunit~[L] COG0776 Bacterial nucleoid DNA-binding protein	gene	gene4075	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_4096
CH54_4097	CH54_4097		CH54_4097	4458615	4458734	-	hypothetical protein		gene	gene4076	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_4097
CH54_4098	CH54_4098		CH54_4098	4459023	4461215	+	DNA internalization-related competence protein ComEC/Rec2	comEC_Rec2: DNA internalization-related competence protein ComEC/Rec2~[R] COG0658 Predicted membrane metal-binding protein	gene	gene4077	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_4098
CH54_4099	CH54_4099	msbA	msbA	4461251	4462999	+	lipid A export permease/ATP-binding protein MsbA	msbA_lipidA: lipid A export permease/ATP-binding protein MsbA~[V] COG1132 ABC-type multidrug transport system%2C ATPase and permease components	gene	gene4078	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_4099
CH54_41	CH54_41	ccmF	ccmF	43310	45217	+	cytochrome c-type biogenesis protein CcmF	nrfE: cytochrome c-type biogenesis protein CcmF~[O] COG1138 Cytochrome c biogenesis factor	gene	gene40	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_41
CH54_410	CH54_410		CH54_410	434536	434706	+	hypothetical protein	[S] COG4222 Uncharacterized protein conserved in bacteria	gene	gene408	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_410
CH54_4100	CH54_4100	lpxK	lpxK	4462996	4463979	+	tetraacyldisaccharide 4'-kinase	lpxK: tetraacyldisaccharide 4'-kinase~[M] COG1663 Tetraacyldisaccharide-1-P 4'-kinase	gene	gene4079	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_4100
CH54_4101	CH54_4101		CH54_4101	4463986	4465395	-	hypothetical protein	conserved hypothetical protein~[S] COG5383 Uncharacterized protein conserved in bacteria	gene	gene4080	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_4101
CH54_4102	CH54_4102		CH54_4102	4466056	4466265	+	'Cold-shock' DNA-binding domain protein	[K] COG1278 Cold shock proteins	gene	gene4081	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_4102
CH54_4103	CH54_4103		CH54_4103	4466673	4466855	+	trm112p-like family protein	[S] COG2835 Uncharacterized conserved protein	gene	gene4082	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_4103
CH54_4104	CH54_4104	kdsB	kdsB	4466852	4467604	+	3-deoxy-D-manno-octulosonate cytidylyltransferase	kdsB: 3-deoxy-D-manno-octulosonate cytidylyltransferase~[M] COG1212 CMP-2-keto-3-deoxyoctulosonic acid synthetase	gene	gene4083	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_4104
CH54_4105	CH54_4105		CH54_4105	4467791	4468684	+	fructosamine kinase family protein		gene	gene4084	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_4105
CH54_4106	CH54_4106		CH54_4106	4468693	4469460	-	hypothetical protein	conserved hypothetical protein~[S] COG1434 Uncharacterized conserved protein	gene	gene4085	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_4106
CH54_4107	CH54_4107		CH54_4107	4469651	4470436	+	methyltransferase small domain protein	[QR] COG0500 SAM-dependent methyltransferases	gene	gene4086	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_4107
CH54_4108	CH54_4108		CH54_4108	4470433	4471755	+	kicB killing factor family protein	[D] COG3006 Uncharacterized protein involved in chromosome partitioning	gene	gene4087	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_4108
CH54_4109	CH54_4109		CH54_4109	4471736	4472464	+	mukE-like family protein	[D] COG3095 Uncharacterized protein involved in chromosome partitioning	gene	gene4088	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_4109
CH54_411	CH54_411		CH54_411	434915	436156	+	sugar (and other) transporter family protein	[GEPR] COG0477 Permeases of the major facilitator superfamily	gene	gene409	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_411
CH54_4110	CH54_4110		CH54_4110	4472461	4476906	+	hypothetical protein	mukB N-terminal family protein~[D] COG3096 Uncharacterized protein involved in chromosome partitioning	gene	gene4089	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_4110
CH54_4111	CH54_4111		CH54_4111	4477243	4479117	+	L%2CD-transpeptidase catalytic domain protein	[S] COG2989 Uncharacterized protein conserved in bacteria	gene	gene4090	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_4111
CH54_4112	CH54_4112		CH54_4112	4479383	4479931	+	hypothetical protein	conserved hypothetical protein~[S] COG3108 Uncharacterized protein conserved in bacteria	gene	gene4091	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_4112
CH54_4113	CH54_4113		CH54_4113	4480110	4480757	+	beta-lactamase superfamily domain protein	[R] COG0491 Zn-dependent hydrolases%2C including glyoxylases	gene	gene4092	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_4113
CH54_4114	CH54_4114		CH54_4114	4481164	4482705	+	EAL domain protein	[T] COG2200 FOG: EAL domain	gene	gene4093	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_4114
CH54_4115	CH54_4115		CH54_4115	4482776	4483966	-	aminotransferase class I and II family protein	[E] COG1448 Aspartate/tyrosine/aromatic aminotransferase	gene	gene4094	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_4115
CH54_4116	CH54_4116		CH54_4116	4484239	4485354	-	gram-negative porin family protein	[M] COG3203 Outer membrane protein (porin)	gene	gene4095	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_4116
CH54_4117	CH54_4117	asnS	asnS	4485651	4487051	-	asparagine--tRNA ligase	asnS: asparagine--tRNA ligase~[J] COG0017 Aspartyl/asparaginyl-tRNA synthetases	gene	gene4096	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_4117
CH54_4118	CH54_4118	pncB	pncB	4487420	4488625	-	nicotinate phosphoribosyltransferase	NAPRTase: nicotinate phosphoribosyltransferase~[H] COG1488 Nicotinic acid phosphoribosyltransferase	gene	gene4097	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_4118
CH54_4119	CH54_4119	pepN	pepN	4489208	4491823	+	aminopeptidase N	pepN_proteo: aminopeptidase N~[E] COG0308 Aminopeptidase N	gene	gene4098	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_4119
CH54_412	CH54_412		CH54_412	436203	437333	+	acyl-synthetase%2C LuxE family protein		gene	gene410	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_412
CH54_4120	CH54_4120	pyrD	pyrD	4492043	4493053	+	dihydroorotate dehydrogenase	pyrD_sub2: dihydroorotate dehydrogenase~[F] COG0167 Dihydroorotate dehydrogenase	gene	gene4099	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_4120
CH54_4121	CH54_4121		CH54_4121	4493227	4493778	+	hypothetical protein	conserved hypothetical protein	gene	gene4100	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_4121
CH54_4122	CH54_4122		CH54_4122	4494023	4495132	-	MOSC domain protein	[R] COG3217 Uncharacterized Fe-S protein	gene	gene4101	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_4122
CH54_413	CH54_413		CH54_413	437336	439741	+	acyl-CoA reductase family protein	[H] COG1541 Coenzyme F390 synthetase	gene	gene411	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_413
CH54_414	CH54_414		CH54_414	439798	441144	+	AMP-binding enzyme family protein	[H] COG1541 Coenzyme F390 synthetase	gene	gene412	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_414
CH54_415	CH54_415		CH54_415	441141	442037	+	acetyltransferase family protein	[KR] COG0454 Histone acetyltransferase HPA2 and related acetyltransferases	gene	gene413	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_415
CH54_416	CH54_416		CH54_416	442118	443299	-	hypothetical protein	[O] COG1076 DnaJ-domain-containing proteins 1	gene	gene414	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_416
CH54_417	CH54_417		CH54_417	443342	443713	-	hypothetical protein		gene	gene415	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_417
CH54_418	CH54_418		CH54_418	444515	444643	-	luxR-family transcriptional regulatory domain protein		gene	gene417	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_418
CH54_419	CH54_419		CH54_419	443827	444540	+	major Facilitator Superfamily protein	[GEPR] COG0477 Permeases of the major facilitator superfamily	gene	gene416	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_419
CH54_42	CH54_42	dsbE	dsbE	45214	45762	+	periplasmic thiol:disulfide oxidoreductase%2C DsbE subfamily protein	dsbE: periplasmic thiol:disulfide oxidoreductases%2C DsbE subfamily protein~[OC] COG0526 Thiol-disulfide isomerase and thioredoxins	gene	gene41	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_42
CH54_420	CH54_420		CH54_420	445579	445899	+	bacterial regulatory%2C arsR family protein	[K] COG0640 Predicted transcriptional regulators	gene	gene418	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_420
CH54_421	CH54_421	arsB	arsB	445946	447235	+	arsenite/antimonite efflux pump membrane family protein	2a45: arsenite/antimonite efflux pump membrane family protein~[P] COG1055 Na+/H+ antiporter NhaD and related arsenite permeases	gene	gene419	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_421
CH54_422	CH54_422	arsC	arsC	447300	447728	+	arsenate reductase	arsC: arsenate reductase~[P] COG1393 Arsenate reductase and related proteins%2C glutaredoxin family	gene	gene420	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_422
CH54_423	CH54_423		CH54_423	447848	448528	-	integrase core domain protein	[L] COG3316 Transposase and inactivated derivatives	gene	gene421	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_423
CH54_424	CH54_424	hisC	hisC	449019	450134	+	histidinol-phosphate transaminase	hisC: histidinol-phosphate transaminase~[E] COG0079 Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase	gene	gene422	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_424
CH54_425	CH54_425		CH54_425	450218	451612	+	permease for cytosine/purine%2C uracil%2C thiamine%2C allantoin family protein	[F] COG1457 Purine-cytosine permease and related proteins	gene	gene423	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_425
CH54_426	CH54_426		CH54_426	452343	452513	+	hypothetical protein	[L] COG3316 Transposase and inactivated derivatives	gene	gene424	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_426
CH54_427	CH54_427		CH54_427	452514	453047	+	integrase core domain protein	[L] COG3316 Transposase and inactivated derivatives	gene	gene425	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_427
CH54_428	CH54_428		CH54_428	453206	453955	+	polysaccharide biosynthesis family protein	[R] COG4221 Short-chain alcohol dehydrogenase of unknown specificity	gene	gene426	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_428
CH54_429	CH54_429		CH54_429	454011	454337	-	hypothetical protein	conserved hypothetical protein~[S] COG1742 Uncharacterized conserved protein	gene	gene427	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_429
CH54_43	CH54_43		CH54_43	45759	46169	+	cytochrome C biogenesis family protein	[O] COG3088 Uncharacterized protein involved in biosynthesis of c-type cytochromes	gene	gene42	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_43
CH54_430	CH54_430		CH54_430	454610	454981	+	hypothetical protein	conserved hypothetical protein	gene	gene428	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_430
CH54_431	CH54_431		CH54_431	455073	455318	+	hypothetical protein	conserved hypothetical protein	gene	gene429	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_431
CH54_432	CH54_432		CH54_432	455902	457245	+	voltage gated chloride channel family protein	[P] COG0038 Chloride channel protein EriC	gene	gene430	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_432
CH54_433	CH54_433	bioD	bioD	457411	458079	-	dethiobiotin synthase	bioD: dethiobiotin synthase~[H] COG0132 Dethiobiotin synthetase	gene	gene431	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_433
CH54_434	CH54_434		CH54_434	458302	459519	-	ROK family protein	[KG] COG1940 Transcriptional regulator/sugar kinase	gene	gene432	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_434
CH54_435	CH54_435		CH54_435	459730	460653	-	bacterial regulatory helix-turn-helix%2C lysR family protein	[K] COG0583 Transcriptional regulator	gene	gene433	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_435
CH54_436	CH54_436		CH54_436	460789	462075	+	sugar (and other) transporter family protein	[GEPR] COG0477 Permeases of the major facilitator superfamily	gene	gene434	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_436
CH54_437	CH54_437		CH54_437	462263	462652	+	hypothetical protein	phospholipase_D-nuclease N-terminal family protein	gene	gene435	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_437
CH54_438	CH54_438	tus	tus	463015	463953	+	DNA replication terminus site-binding protein	rep_term_tus: DNA replication terminus site-binding protein	gene	gene436	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_438
CH54_439	CH54_439		CH54_439	464028	464753	-	bacterial regulatory s%2C luxR family protein	[TK] COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain	gene	gene437	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_439
CH54_44	CH54_44		CH54_44	46169	46828	+	tetratricopeptide repeat family protein	[O] COG4235 Cytochrome c biogenesis factor	gene	gene43	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_44
CH54_440	CH54_440	fumC	fumC	465105	466499	-	fumarate hydratase%2C class II	fumC_II: fumarate hydratase%2C class II~[C] COG0114 Fumarase	gene	gene438	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_440
CH54_441	CH54_441	manA	manA	466743	467918	+	mannose-6-phosphate isomerase%2C class I	manA: mannose-6-phosphate isomerase%2C class I~[G] COG1482 Phosphomannose isomerase	gene	gene439	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_441
CH54_442	CH54_442		CH54_442	468143	469678	+	hypothetical protein	conserved hypothetical protein~[S] COG5339 Uncharacterized protein conserved in bacteria	gene	gene440	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_442
CH54_443	CH54_443		CH54_443	470168	471442	+	MASE1 family protein	[T] COG3447 Predicted integral membrane sensor domain	gene	gene441	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_443
CH54_444	CH54_444		CH54_444	471458	472792	+	putative membrane protein		gene	gene442	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_444
CH54_445	CH54_445		CH54_445	472805	473836	-	bacterial regulatory s%2C lacI family protein	[K] COG1609 Transcriptional regulators	gene	gene443	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_445
CH54_446	CH54_446		CH54_446	473833	474141	-	hypothetical protein		gene	gene444	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_446
CH54_447	CH54_447		CH54_447	474285	475895	+	PTS system%2C glucose-like IIB component domain protein	EIIB_glc: PTS system%2C glucose-like IIB component domain protein~[G] COG1263 Phosphotransferase system IIC components%2C glucose/maltose/N-acetylglucosamine-specific	gene	gene445	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_447
CH54_448	CH54_448		CH54_448	476090	477268	+	C-S lyase family protein	C_S_lyase_PatB: C-S lyase family protein~[E] COG1168 Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities	gene	gene446	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_448
CH54_449	CH54_449	add	add	477430	478428	+	adenosine deaminase	aden_deam: adenosine deaminase~[F] COG1816 Adenosine deaminase	gene	gene447	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_449
CH54_45	CH54_45		CH54_45	47393	48319	+	eamA-like transporter family protein	[GER] COG0697 Permeases of the drug/metabolite transporter (DMT) superfamily	gene	gene44	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_45
CH54_450	CH54_450		CH54_450	478499	479536	-	hypothetical protein	conserved hypothetical protein~[R] COG0385 Predicted Na+-dependent transporter	gene	gene448	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_450
CH54_451	CH54_451		CH54_451	479651	480703	-	hypothetical protein	oxidoreductase family%2C C-terminal alpha/beta domain protein~[R] COG0673 Predicted dehydrogenases and related proteins	gene	gene449	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_451
CH54_452	CH54_452		CH54_452	480940	481881	-	helix-turn-helix domain protein	[K] COG2207 AraC-type DNA-binding domain-containing proteins	gene	gene450	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_452
CH54_453	CH54_453		CH54_453	482124	482828	-	bacterial regulatory s%2C luxR family protein	[TK] COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain	gene	gene451	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_453
CH54_454	CH54_454		CH54_454	482894	484174	-	permease for cytosine/purine%2C uracil%2C thiamine%2C allantoin family protein	[F] COG1457 Purine-cytosine permease and related proteins	gene	gene452	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_454
CH54_455	CH54_455		CH54_455	484445	485197	+	bacterial regulatory s%2C luxR family protein	[TK] COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain	gene	gene453	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_455
CH54_456	CH54_456	araB	araB	485373	487076	+	ribulokinase	L-ribulokinase: ribulokinase~[C] COG1069 Ribulose kinase	gene	gene454	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_456
CH54_457	CH54_457		CH54_457	487140	488642	+	L-arabinose isomerase family protein	[G] COG2160 L-arabinose isomerase	gene	gene455	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_457
CH54_458	CH54_458		CH54_458	488764	489942	-	ABC transporter family protein	[R] COG4637 Predicted ATPase	gene	gene456	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_458
CH54_459	CH54_459		CH54_459	490081	492201	-	type I secretion system ATPase family protein	type_I_sec_HlyB: type I secretion system ATPase family protein~[V] COG2274 ABC-type bacteriocin/lantibiotic exporters%2C contain an N-terminal double-glycine peptidase domain	gene	gene457	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_459
CH54_46	CH54_46		CH54_46	48431	51163	-	bacterial extracellular solute-binding s%2C 3 family protein	[ET] COG0834 ABC-type amino acid transport/signal transduction systems%2C periplasmic component/domain	gene	gene45	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_46
CH54_460	CH54_460		CH54_460	492203	493597	-	type I secretion membrane fusion%2C HlyD family protein	type_I_hlyD: type I secretion membrane fusion%2C HlyD family protein~[M] COG0845 Membrane-fusion protein	gene	gene458	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_460
CH54_461	CH54_461		CH54_461	493594	495720	-	type I secretion system ATPase family protein	type_I_sec_HlyB: type I secretion system ATPase family protein~[V] COG2274 ABC-type bacteriocin/lantibiotic exporters%2C contain an N-terminal double-glycine peptidase domain	gene	gene459	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_461
CH54_462	CH54_462		CH54_462	496091	497848	+	formate--tetrahydrofolate ligase family protein	[F] COG2759 Formyltetrahydrofolate synthetase	gene	gene460	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_462
CH54_463	CH54_463		CH54_463	497915	498358	+	hypothetical protein	conserved hypothetical protein	gene	gene461	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_463
CH54_464	CH54_464		CH54_464	498489	499070	+	electron transport complex%2C RnfABCDGE type%2C A subunit	rnfA: electron transport complex%2C RnfABCDGE type%2C A subunit~[C] COG4657 Predicted NADH:ubiquinone oxidoreductase%2C subunit RnfA	gene	gene462	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_464
CH54_465	CH54_465		CH54_465	499070	499693	+	electron transport complex%2C RnfABCDGE type%2C B subunit	rnfB: electron transport complex%2C RnfABCDGE type%2C B subunit~[C] COG2878 Predicted NADH:ubiquinone oxidoreductase%2C subunit RnfB	gene	gene463	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_465
CH54_466	CH54_466		CH54_466	499686	501899	+	electron transport complex%2C RnfABCDGE type%2C C subunit	rnfC: electron transport complex%2C RnfABCDGE type%2C C subunit~[C] COG4656 Predicted NADH:ubiquinone oxidoreductase%2C subunit RnfC	gene	gene464	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_466
CH54_467	CH54_467		CH54_467	501929	502816	-	helix-turn-helix domain protein	[K] COG2207 AraC-type DNA-binding domain-containing proteins	gene	gene465	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_467
CH54_468	CH54_468		CH54_468	503276	504370	+	electron transport complex%2C RnfABCDGE type%2C D subunit	rnfD: electron transport complex%2C RnfABCDGE type%2C D subunit~[C] COG4658 Predicted NADH:ubiquinone oxidoreductase%2C subunit RnfD	gene	gene466	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_468
CH54_469	CH54_469		CH54_469	504380	505009	+	electron transport complex%2C RnfABCDGE type%2C G subunit	rnfG: electron transport complex%2C RnfABCDGE type%2C G subunit~[C] COG4659 Predicted NADH:ubiquinone oxidoreductase%2C subunit RnfG	gene	gene467	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_469
CH54_47	CH54_47		CH54_47	51638	53365	-	trkA-C domain protein	[P] COG3263 NhaP-type Na+/H+ and K+/H+ antiporters with a unique C-terminal domain	gene	gene46	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_47
CH54_470	CH54_470		CH54_470	505006	505707	+	electron transport complex%2C RnfABCDGE type%2C E subunit	rnfE: electron transport complex%2C RnfABCDGE type%2C E subunit~[C] COG4660 Predicted NADH:ubiquinone oxidoreductase%2C subunit RnfE	gene	gene468	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_470
CH54_471	CH54_471	nth	nth	505704	506345	+	endonuclease III	nth: endonuclease III~[L] COG0177 Predicted EndoIII-related endonuclease	gene	gene469	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_471
CH54_472	CH54_472		CH54_472	506397	506618	-	hypothetical protein	conserved hypothetical protein	gene	gene470	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_472
CH54_473	CH54_473		CH54_473	506712	507752	-	hypothetical protein		gene	gene471	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_473
CH54_474	CH54_474		CH54_474	507796	509118	-	hypothetical protein		gene	gene472	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_474
CH54_475	CH54_475		CH54_475	509787	512111	+	molybdopterin oxidoreductase family protein	[C] COG0243 Anaerobic dehydrogenases%2C typically selenocysteine-containing	gene	gene473	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_475
CH54_476	CH54_476		CH54_476	514144	514329	-	hypothetical protein		gene	gene475	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_476
CH54_477	CH54_477	rnb	rnb	512294	514228	+	exoribonuclease II	RNase_B: exoribonuclease II~[K] COG4776 Exoribonuclease II	gene	gene474	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_477
CH54_478	CH54_478		CH54_478	514738	516804	+	carbon starvation CstA family protein	[T] COG1966 Carbon starvation protein%2C predicted membrane protein	gene	gene476	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_478
CH54_479	CH54_479		CH54_479	516797	517132	+	hypothetical protein	conserved hypothetical protein~[S] COG2879 Uncharacterized small protein	gene	gene477	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_479
CH54_48	CH54_48		CH54_48	53565	53810	-	hypothetical protein		gene	gene47	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_48
CH54_480	CH54_480	fsa	fsa	517250	517915	-	fructose-6-phosphate aldolase	fsa_talC_mipB: fructose-6-phosphate aldolase~[G] COG0176 Transaldolase	gene	gene478	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_480
CH54_481	CH54_481		CH54_481	518066	518812	+	deoR-like helix-turn-helix domain protein	[KG] COG1349 Transcriptional regulators of sugar metabolism	gene	gene479	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_481
CH54_482	CH54_482		CH54_482	518858	519106	+	hypothetical protein	conserved hypothetical protein~[S] COG5460 Uncharacterized conserved protein	gene	gene480	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_482
CH54_483	CH54_483	araD	araD	519133	519828	-	L-ribulose-5-phosphate 4-epimerase	araD: L-ribulose-5-phosphate 4-epimerase~[G] COG0235 Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases	gene	gene481	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_483
CH54_484	CH54_484		CH54_484	520321	520536	+	glycine zipper 2TM domain protein		gene	gene482	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_484
CH54_485	CH54_485		CH54_485	520717	521043	-	translation initiation factor SUI1 family protein	[J] COG0023 Translation initiation factor 1 (eIF-1/SUI1) and related proteins	gene	gene483	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_485
CH54_486	CH54_486	pyrF	pyrF	521040	521780	-	orotidine 5'-phosphate decarboxylase	pyrF: orotidine 5'-phosphate decarboxylase~[F] COG0284 Orotidine-5'-phosphate decarboxylase	gene	gene484	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_486
CH54_487	CH54_487		CH54_487	522170	522430	+	hypothetical protein	conserved hypothetical protein	gene	gene485	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_487
CH54_488	CH54_488		CH54_488	522598	522897	+	hypothetical protein		gene	gene486	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_488
CH54_489	CH54_489		CH54_489	522985	524154	-	tetratricopeptide repeat family protein	[G] COG2956 Predicted N-acetylglucosaminyl transferase	gene	gene487	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_489
CH54_49	CH54_49		CH54_49	54000	55238	-	acyltransferase family protein		gene	gene48	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_49
CH54_490	CH54_490		CH54_490	524161	524472	-	hypothetical protein	conserved hypothetical protein~[S] COG3771 Predicted membrane protein	gene	gene488	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_490
CH54_491	CH54_491		CH54_491	524662	525429	-	PAP2 superfamily protein	[I] COG0671 Membrane-associated phospholipid phosphatase	gene	gene489	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_491
CH54_492	CH54_492	ribA	ribA	525892	526494	+	GTP cyclohydrolase II	ribA: GTP cyclohydrolase II~[H] COG0807 GTP cyclohydrolase II	gene	gene490	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_492
CH54_493	CH54_493	acnA	acnA	526618	529290	-	aconitate hydratase 1	aconitase_1: aconitate hydratase 1~[C] COG1048 Aconitase A	gene	gene491	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_493
CH54_494	CH54_494		CH54_494	529434	530255	-	hypothetical protein		gene	gene492	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_494
CH54_495	CH54_495		CH54_495	530516	530764	+	hypothetical protein		gene	gene493	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_495
CH54_496	CH54_496		CH54_496	530963	531937	-	bacterial regulatory helix-turn-helix%2C lysR family protein	[K] COG0583 Transcriptional regulator	gene	gene494	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_496
CH54_497	CH54_497	topA	topA	532449	535064	-	DNA topoisomerase I	topA_bact: DNA topoisomerase I~[L] COG0551 Zn-finger domain associated with topoisomerase type I	gene	gene495	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_497
CH54_498	CH54_498		CH54_498	535504	535755	+	hypothetical protein	conserved hypothetical protein	gene	gene496	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_498
CH54_499	CH54_499		CH54_499	535860	536906	-	serine dehydrogenase ase family protein	[OU] COG0616 Periplasmic serine proteases (ClpP class)	gene	gene497	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_499
CH54_5	CH54_5		CH54_5	5874	6434	+	hypothetical protein	conserved hypothetical protein~[S] COG3009 Uncharacterized protein conserved in bacteria	gene	gene4	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_5
CH54_50	CH54_50		CH54_50	55467	57053	+	periplasmic glucan biosynthesis%2C MdoG family protein	[P] COG3131 Periplasmic glucans biosynthesis protein	gene	gene49	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_50
CH54_500	CH54_500		CH54_500	537087	537848	+	short chain dehydrogenase family protein	[IQR] COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)	gene	gene498	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_500
CH54_501	CH54_501	cobO	cobO	537860	538450	+	cob(I)yrinic acid a%2Cc-diamide adenosyltransferase	cobA: cob(I)yrinic acid a%2Cc-diamide adenosyltransferase~[H] COG2109 ATP:corrinoid adenosyltransferase	gene	gene499	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_501
CH54_502	CH54_502		CH54_502	538566	538850	-	hypothetical protein	conserved hypothetical protein	gene	gene500	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_502
CH54_503	CH54_503		CH54_503	539116	540165	-	pseudouridine synthase family protein	[J] COG1187 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases	gene	gene501	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_503
CH54_504	CH54_504		CH54_504	540277	541947	+	phage integrase family protein	[L] COG0582 Integrase	gene	gene502	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_504
CH54_505	CH54_505		CH54_505	541986	543797	-	hypothetical protein		gene	gene503	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_505
CH54_506	CH54_506		CH54_506	543870	544058	-	hypothetical protein		gene	gene504	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_506
CH54_507	CH54_507		CH54_507	544193	545236	-	phage major capsid E family protein		gene	gene505	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_507
CH54_508	CH54_508		CH54_508	545359	545670	+	transposase family protein	[L] COG2963 Transposase and inactivated derivatives	gene	gene506	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_508
CH54_509	CH54_509		CH54_509	545781	546533	+	integrase core domain protein	[L] COG2801 Transposase and inactivated derivatives	gene	gene507	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_509
CH54_51	CH54_51		CH54_51	57046	59646	+	glycosyl transferase 21 family protein	[M] COG2943 Membrane glycosyltransferase	gene	gene50	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_51
CH54_510	CH54_510		CH54_510	546655	547272	-	hypothetical protein		gene	gene508	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_510
CH54_511	CH54_511		CH54_511	547828	548382	+	hypothetical protein	resolvase%2C N terminal domain protein~[L] COG1961 Site-specific recombinases%2C DNA invertase Pin homologs	gene	gene509	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_511
CH54_512	CH54_512		CH54_512	548631	548837	+	hypothetical protein		gene	gene510	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_512
CH54_513	CH54_513		CH54_513	549200	550507	+	PAAR motif family protein		gene	gene511	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_513
CH54_514	CH54_514		CH54_514	550507	550935	+	hypothetical protein		gene	gene512	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_514
CH54_515	CH54_515		CH54_515	551103	551759	-	bacterial regulatory s%2C luxR family protein	[TK] COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain	gene	gene513	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_515
CH54_516	CH54_516		CH54_516	551803	552054	-	putative membrane protein		gene	gene514	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_516
CH54_517	CH54_517		CH54_517	552095	552514	-	response regulator	[TK] COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain	gene	gene515	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_517
CH54_518	CH54_518		CH54_518	552602	553621	-	putative large exoprotein involved in heme utilization/adhesion		gene	gene516	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_518
CH54_519	CH54_519		CH54_519	553856	556972	-	bacterial Ig-like domain family protein		gene	gene517	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_519
CH54_52	CH54_52		CH54_52	59738	59998	+	hypothetical protein	conserved hypothetical protein~[R] COG5645 Predicted periplasmic lipoprotein	gene	gene51	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_52
CH54_520	CH54_520		CH54_520	557406	557774	-	hypothetical protein		gene	gene518	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_520
CH54_521	CH54_521		CH54_521	558341	558958	-	bacterial regulatory s%2C luxR family protein	[TK] COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain	gene	gene519	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_521
CH54_522	CH54_522		CH54_522	559076	566164	-	outer membrane autotransporter barrel domain protein	autotrans_barl: outer membrane autotransporter barrel domain protein~[MU] COG3468 Type V secretory pathway%2C adhesin AidA	gene	gene520	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_522
CH54_523	CH54_523		CH54_523	567337	567957	-	tRNA threonylcarbamoyl adenosine modification protein%2C Sua5/YciO/YrdC/YwlC family	[J] COG0009 Putative translation factor (SUA5)	gene	gene521	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_523
CH54_524	CH54_524		CH54_524	567990	568931	-	PHP domain protein	[R] COG0613 Predicted metal-dependent phosphoesterases (PHP family)	gene	gene522	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_524
CH54_525	CH54_525	trpE	trpE	569358	570920	+	anthranilate synthase component I	trpE_proteo: anthranilate synthase component I~[EH] COG0147 Anthranilate/para-aminobenzoate synthases component I	gene	gene523	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_525
CH54_526	CH54_526		CH54_526	570920	571525	+	glutamine amidotransferase of anthranilate synthase/aminodeoxychorismate synthase family protein	trpG_papA: glutamine amidotransferase of anthranilate synthase/aminodeoxychorismate synthase family protein~[EH] COG0512 Anthranilate/para-aminobenzoate synthases component II	gene	gene524	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_526
CH54_527	CH54_527	trpD	trpD	571587	572603	+	anthranilate phosphoribosyltransferase	trpD: anthranilate phosphoribosyltransferase~[E] COG0547 Anthranilate phosphoribosyltransferase	gene	gene525	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_527
CH54_528	CH54_528		CH54_528	572607	573983	+	indole-3-glycerol phosphate synthase family protein	[E] COG0134 Indole-3-glycerol phosphate synthase	gene	gene526	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_528
CH54_529	CH54_529	trpB	trpB	574007	575197	+	tryptophan synthase%2C beta subunit	trpB: tryptophan synthase%2C beta subunit~[E] COG0133 Tryptophan synthase beta chain	gene	gene527	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_529
CH54_53	CH54_53		CH54_53	60001	60549	-	acetyltransferase domain protein		gene	gene52	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_53
CH54_530	CH54_530	trpA	trpA	575197	576003	+	tryptophan synthase%2C alpha subunit	trpA: tryptophan synthase%2C alpha subunit~[E] COG0159 Tryptophan synthase alpha chain	gene	gene528	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_530
CH54_531	CH54_531		CH54_531	576335	576649	+	BON domain protein	[R] COG2823 Predicted periplasmic or secreted lipoprotein	gene	gene529	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_531
CH54_532	CH54_532		CH54_532	576995	577630	-	ompW family protein	[M] COG3047 Outer membrane protein W	gene	gene530	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_532
CH54_533	CH54_533		CH54_533	577992	578759	+	hypothetical protein	conserved hypothetical protein	gene	gene531	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_533
CH54_534	CH54_534		CH54_534	578807	580561	-	sulfate transporter family protein	[P] COG0659 Sulfate permease and related transporters (MFS superfamily)	gene	gene532	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_534
CH54_535	CH54_535	ispZ	ispZ	580792	581334	+	intracellular septation protein A	ispZ: intracellular septation protein A~[D] COG2917 Intracellular septation protein A	gene	gene533	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_535
CH54_536	CH54_536		CH54_536	581354	581803	+	thioesterase superfamily protein	[I] COG1607 Acyl-CoA hydrolase	gene	gene534	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_536
CH54_537	CH54_537		CH54_537	581895	582653	-	hypothetical protein	tonB_Cterm: TonB family C-terminal domain protein~[M] COG0810 Periplasmic protein TonB%2C links inner and outer membranes	gene	gene535	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_537
CH54_538	CH54_538		CH54_538	582958	583254	+	YCII-related domain protein	[S] COG2350 Uncharacterized protein conserved in bacteria	gene	gene536	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_538
CH54_539	CH54_539		CH54_539	583480	583737	+	transcription factor zinc-finger family protein	[S] COG3809 Uncharacterized protein conserved in bacteria	gene	gene537	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_539
CH54_54	CH54_54		CH54_54	60592	61044	+	hypothetical protein		gene	gene53	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_54
CH54_540	CH54_540		CH54_540	583814	584077	-	hypothetical protein	conserved hypothetical protein	gene	gene538	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_540
CH54_541	CH54_541		CH54_541	584218	584949	-	EAL domain protein	[T] COG2200 FOG: EAL domain	gene	gene539	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_541
CH54_542	CH54_542	cls	cls	585988	587448	+	cardiolipin synthase	bac_cardiolipin: cardiolipin synthase~[I] COG1502 Phosphatidylserine/phosphatidylglycerophosphate/cardiolipin synthases and related enzymes	gene	gene540	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_542
CH54_543	CH54_543		CH54_543	587582	587905	+	hypothetical protein	conserved hypothetical protein~[S] COG3099 Uncharacterized protein conserved in bacteria	gene	gene541	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_543
CH54_544	CH54_544		CH54_544	588149	589150	-	hypothetical protein	oligo_HPY: oligopeptide/dipeptide ABC transporter%2C ATP-binding%2C C-terminal domain protein~[E] COG4608 ABC-type oligopeptide transport system%2C ATPase component	gene	gene542	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_544
CH54_545	CH54_545		CH54_545	589147	590148	-	hypothetical protein	oligo_HPY: oligopeptide/dipeptide ABC transporter%2C ATP-binding%2C C-terminal domain protein~[EP] COG0444 ABC-type dipeptide/oligopeptide/nickel transport system%2C ATPase component	gene	gene543	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_545
CH54_546	CH54_546		CH54_546	590160	591065	-	binding--dependent transport system inner membrane component family protein	[EP] COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems%2C permease components	gene	gene544	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_546
CH54_547	CH54_547		CH54_547	591084	592004	-	binding--dependent transport system inner membrane component family protein	[EP] COG0601 ABC-type dipeptide/oligopeptide/nickel transport systems%2C permease components	gene	gene545	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_547
CH54_548	CH54_548		CH54_548	592080	593717	-	bacterial extracellular solute-binding s%2C 5 Middle family protein	[E] COG4166 ABC-type oligopeptide transport system%2C periplasmic component	gene	gene546	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_548
CH54_549	CH54_549		CH54_549	593943	595580	-	bacterial extracellular solute-binding s%2C 5 Middle family protein	[E] COG4166 ABC-type oligopeptide transport system%2C periplasmic component	gene	gene547	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_549
CH54_55	CH54_55		CH54_55	61107	62642	-	amino acid/peptide transporter family protein	yjdL_sub1_fam: amino acid/peptide transporter family protein~[E] COG3104 Dipeptide/tripeptide permease	gene	gene54	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_55
CH54_550	CH54_550		CH54_550	596299	596943	-	marC integral membrane family protein	[U] COG2095 Multiple antibiotic transporter	gene	gene548	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_550
CH54_551	CH54_551		CH54_551	597644	600319	+	aldehyde dehydrogenase family protein	[C] COG1012 NAD-dependent aldehyde dehydrogenases	gene	gene549	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_551
CH54_552	CH54_552		CH54_552	600692	601444	-	integrase core domain protein	[L] COG2801 Transposase and inactivated derivatives	gene	gene550	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_552
CH54_553	CH54_553		CH54_553	601555	601866	-	transposase family protein	[L] COG2963 Transposase and inactivated derivatives	gene	gene551	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_553
CH54_554	CH54_554		CH54_554	602058	602657	-	thymidine kinase family protein	[F] COG1435 Thymidine kinase	gene	gene552	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_554
CH54_555	CH54_555		CH54_555	603410	603820	+	H-NS histone family protein	[R] COG2916 DNA-binding protein H-NS	gene	gene553	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_555
CH54_556	CH54_556		CH54_556	604214	605563	-	nucleotide sugar dehydrogenase family protein	NDP-sugDHase: nucleotide sugar dehydrogenase family protein~[M] COG1004 Predicted UDP-glucose 6-dehydrogenase	gene	gene554	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_556
CH54_557	CH54_557		CH54_557	605869	606897	-	response regulator	[T] COG0784 FOG: CheY-like receiver	gene	gene555	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_557
CH54_558	CH54_558		CH54_558	606999	607898	-	patatin-like phospholipase family protein	[R] COG1752 Predicted esterase of the alpha-beta hydrolase superfamily	gene	gene556	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_558
CH54_559	CH54_559		CH54_559	608286	608627	+	acetyltransferase domain protein	[KR] COG0454 Histone acetyltransferase HPA2 and related acetyltransferases	gene	gene557	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_559
CH54_56	CH54_56		CH54_56	63096	64337	-	sugar (and other) transporter family protein	[GEPR] COG0477 Permeases of the major facilitator superfamily	gene	gene55	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_56
CH54_560	CH54_560		CH54_560	609274	609768	+	SEC-C motif family protein	[S] COG3012 Uncharacterized protein conserved in bacteria	gene	gene558	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_560
CH54_561	CH54_561	purU	purU	609850	610698	+	formyltetrahydrofolate deformylase	purU: formyltetrahydrofolate deformylase~[F] COG0788 Formyltetrahydrofolate hydrolase	gene	gene559	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_561
CH54_563	CH54_563		CH54_563	610858	610942	+	tRNA-Tyr		tRNA	gene560	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_563
CH54_564	CH54_564		CH54_564	611065	611149	+	tRNA-Tyr		tRNA	gene561	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_564
CH54_565	CH54_565		CH54_565	611254	612114	-	bacterial regulatory helix-turn-helix%2C lysR family protein	[K] COG0583 Transcriptional regulator	gene	gene562	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_565
CH54_566	CH54_566	xth	xth	612833	613708	+	exodeoxyribonuclease III	exoDNase_III: exodeoxyribonuclease III~[L] COG0708 Exonuclease III	gene	gene563	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_566
CH54_567	CH54_567		CH54_567	613793	614179	+	NUDIX domain protein	[LR] COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes	gene	gene564	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_567
CH54_568	CH54_568		CH54_568	614184	614468	-	hypothetical protein	conserved hypothetical protein	gene	gene565	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_568
CH54_569	CH54_569	topB	topB	614465	616393	-	DNA topoisomerase III family protein	topB: DNA topoisomerase III family protein~[L] COG0550 Topoisomerase IA	gene	gene566	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_569
CH54_57	CH54_57		CH54_57	64667	65101	-	doxX family protein	[S] COG2259 Predicted membrane protein	gene	gene56	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_57
CH54_570	CH54_570	selD	selD	616437	617483	-	selenide%2C water dikinase	selD: selenide%2C water dikinase~[E] COG0709 Selenophosphate synthase	gene	gene567	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_570
CH54_571	CH54_571		CH54_571	617804	618355	-	nitroreductase family protein	[C] COG0778 Nitroreductase	gene	gene568	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_571
CH54_572	CH54_572	sppA	sppA	618494	620368	+	signal peptide peptidase SppA%2C 67K type	sppA_67K: signal peptide peptidase SppA%2C 67K type~[OU] COG0616 Periplasmic serine proteases (ClpP class)	gene	gene569	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_572
CH54_573	CH54_573		CH54_573	620486	621502	+	L-asparaginase%2C type I family protein	asnASE_I: L-asparaginase%2C type I family protein~[EJ] COG0252 L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D	gene	gene570	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_573
CH54_574	CH54_574		CH54_574	621518	622168	+	isochorismatase family protein	[Q] COG1335 Amidases related to nicotinamidase	gene	gene571	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_574
CH54_575	CH54_575		CH54_575	622254	622526	-	hypothetical protein	conserved hypothetical protein~[S] COG3139 Uncharacterized protein conserved in bacteria	gene	gene572	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_575
CH54_576	CH54_576	msrB	msrB	622602	623015	-	methionine-R-sulfoxide reductase	[O] COG0229 Conserved domain frequently associated with peptide methionine sulfoxide reductase	gene	gene573	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_576
CH54_577	CH54_577	gap	gap	623363	624358	+	glyceraldehyde-3-phosphate dehydrogenase%2C type I	GAPDH-I: glyceraldehyde-3-phosphate dehydrogenase%2C type I~[G] COG0057 Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase	gene	gene574	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_577
CH54_578	CH54_578		CH54_578	624598	625476	+	aldose 1-epimerase family protein	[G] COG0676 Uncharacterized enzymes related to aldose 1-epimerase	gene	gene575	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_578
CH54_579	CH54_579		CH54_579	625550	626320	-	mltA-interacting MipA family protein	[M] COG3713 Outer membrane protein V	gene	gene576	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_579
CH54_58	CH54_58		CH54_58	65236	65418	+	hypothetical protein		gene	gene57	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_58
CH54_580	CH54_580		CH54_580	626743	628677	+	hypothetical protein	prkA serine kinase C-terminal domain protein~[T] COG2766 Putative Ser protein kinase	gene	gene577	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_580
CH54_581	CH54_581		CH54_581	628789	630066	+	hypothetical protein	conserved hypothetical protein~[S] COG2718 Uncharacterized conserved protein	gene	gene578	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_581
CH54_582	CH54_582		CH54_582	630184	631254	+	eamA-like transporter family protein	[GER] COG0697 Permeases of the drug/metabolite transporter (DMT) superfamily	gene	gene579	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_582
CH54_583	CH54_583		CH54_583	631313	632218	-	bacterial regulatory helix-turn-helix%2C lysR family protein	[K] COG0583 Transcriptional regulator	gene	gene580	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_583
CH54_584	CH54_584		CH54_584	632393	633265	+	pirin family protein	[R] COG1741 Pirin-related protein	gene	gene581	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_584
CH54_585	CH54_585		CH54_585	633647	635875	+	diguanylate cyclase domain protein	GGDEF: diguanylate cyclase domain protein~[T] COG5001 Predicted signal transduction protein containing a membrane domain%2C an EAL and a GGDEF domain	gene	gene582	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_585
CH54_586	CH54_586		CH54_586	636072	637298	+	drug resistance transporter%2C Bcr/CflA subfamily protein	efflux_Bcr_CflA: drug resistance transporter%2C Bcr/CflA subfamily protein~[GEPR] COG0477 Permeases of the major facilitator superfamily	gene	gene583	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_586
CH54_587	CH54_587	alr	alr	637513	638580	-	alanine racemase	alr: alanine racemase~[M] COG0787 Alanine racemase	gene	gene584	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_587
CH54_588	CH54_588		CH54_588	638648	639952	-	ketopantoate reductase PanE/ApbA family protein	[E] COG0665 Glycine/D-amino acid oxidases (deaminating)	gene	gene585	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_588
CH54_589	CH54_589		CH54_589	640475	642010	+	spoVR like family protein	[S] COG2719 Uncharacterized conserved protein	gene	gene586	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_589
CH54_59	CH54_59	lpxL	lpxL	65484	66404	-	lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase family protein	lipid_A_htrB: lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase family protein~[M] COG1560 Lauroyl/myristoyl acyltransferase	gene	gene58	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_59
CH54_590	CH54_590	fadR	fadR	642091	642810	-	fatty acid metabolism transcriptional regulator FadR	fadR_gamma: fatty acid metabolism transcriptional regulator FadR~[K] COG2186 Transcriptional regulators	gene	gene587	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_590
CH54_591	CH54_591	nhaB	nhaB	643055	644629	+	Na+/H+ antiporter NhaB	nhaB: Na+/H+ antiporter NhaB~[P] COG3067 Na+/H+ antiporter	gene	gene588	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_591
CH54_592	CH54_592		CH54_592	644858	645388	+	disulfide bond formation DsbB family protein	[O] COG1495 Disulfide bond formation protein DsbB	gene	gene589	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_592
CH54_593	CH54_593	lpxA	lpxA	645503	646237	-	acyl-[acyl-carrier-protein]-UDP-N-acetylglucosamine O-acyltransferase	lipid_A_lpxA: acyl-[acyl-carrier-protein]-UDP-N-acetylglucosamine O-acyltransferase~[M] COG1043 Acyl-[acyl carrier protein]--UDP-N-acetylglucosamine O-acyltransferase	gene	gene590	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_593
CH54_594	CH54_594		CH54_594	646858	647214	-	hypothetical protein		gene	gene591	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_594
CH54_595	CH54_595		CH54_595	647280	647726	-	putative zinc-/iron-chelating domain protein	[S] COG2983 Uncharacterized conserved protein	gene	gene592	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_595
CH54_596	CH54_596		CH54_596	647844	648500	-	fumarylacetoacetate (FAA) hydrolase family protein	[Q] COG0179 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1%2C7-dioic acid hydratase (catechol pathway)	gene	gene593	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_596
CH54_597	CH54_597		CH54_597	648548	649615	-	lytic murein transglycosylase family protein	mltB_2: lytic murein transglycosylase family protein~[M] COG2951 Membrane-bound lytic murein transglycosylase B	gene	gene594	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_597
CH54_598	CH54_598		CH54_598	649654	649926	-	ycgL domain protein	[S] COG3100 Uncharacterized protein conserved in bacteria	gene	gene595	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_598
CH54_599	CH54_599		CH54_599	650073	650438	-	putative exported protein		gene	gene596	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_599
CH54_6	CH54_6		CH54_6	6704	6871	+	ribosome modulation factor family protein	[J] COG3130 Ribosome modulation factor	gene	gene5	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_6
CH54_60	CH54_60		CH54_60	66834	66992	+	putative membrane protein		gene	gene59	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_60
CH54_600	CH54_600	minC	minC	651083	651769	+	septum site-determining protein MinC	minC: septum site-determining protein MinC~[D] COG0850 Septum formation inhibitor	gene	gene597	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_600
CH54_601	CH54_601	minD	minD	651795	652607	+	septum site-determining protein MinD	minD_bact: septum site-determining protein MinD~[D] COG2894 Septum formation inhibitor-activating ATPase	gene	gene598	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_601
CH54_602	CH54_602	minE	minE	652611	652880	+	cell division topological specificity factor MinE	minE: cell division topological specificity factor MinE~[D] COG0851 Septum formation topological specificity factor	gene	gene599	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_602
CH54_603	CH54_603	rnd	rnd	653095	654216	-	ribonuclease D	rnd: ribonuclease D~[J] COG0349 Ribonuclease D	gene	gene600	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_603
CH54_604	CH54_604		CH54_604	654314	656008	-	AMP-binding enzyme family protein	[IQ] COG0318 Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II	gene	gene601	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_604
CH54_605	CH54_605		CH54_605	656375	656980	-	outer membrane lipo%2C Slp family protein	slp: outer membrane lipo%2C Slp family protein~[M] COG3065 Starvation-inducible outer membrane lipoprotein	gene	gene602	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_605
CH54_606	CH54_606	yeaZ	yeaZ	657080	657778	-	tRNA threonylcarbamoyl adenosine modification protein YeaZ	T6A_YeaZ: tRNA threonylcarbamoyl adenosine modification protein YeaZ~[O] COG1214 Inactive homolog of metal-dependent proteases%2C putative molecular chaperone	gene	gene603	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_606
CH54_607	CH54_607		CH54_607	657853	659757	-	DEAD_2 family protein	[KL] COG1199 Rad3-related DNA helicases	gene	gene604	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_607
CH54_608	CH54_608		CH54_608	659878	660222	+	endoribonuclease L-PSP family protein	[J] COG0251 Putative translation initiation inhibitor%2C yjgF family	gene	gene605	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_608
CH54_609	CH54_609		CH54_609	660386	660715	-	small Multidrug Resistance family protein	[P] COG2076 Membrane transporters of cations and cationic drugs	gene	gene606	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_609
CH54_61	CH54_61		CH54_61	67170	68234	+	rhodanese-like domain protein	[R] COG1054 Predicted sulfurtransferase	gene	gene60	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_61
CH54_610	CH54_610		CH54_610	660702	661079	-	small Multidrug Resistance family protein	[P] COG2076 Membrane transporters of cations and cationic drugs	gene	gene607	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_610
CH54_611	CH54_611	eda	eda	661630	662271	-	2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase family protein	eda: 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase family protein~[G] COG0800 2-keto-3-deoxy-6-phosphogluconate aldolase	gene	gene608	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_611
CH54_612	CH54_612	zwf	zwf	662585	664069	-	glucose-6-phosphate dehydrogenase	zwf: glucose-6-phosphate dehydrogenase~[G] COG0364 Glucose-6-phosphate 1-dehydrogenase	gene	gene609	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_612
CH54_613	CH54_613		CH54_613	664404	665291	+	SIS domain protein	[K] COG1737 Transcriptional regulators	gene	gene610	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_613
CH54_614	CH54_614	pyk	pyk	665709	667151	+	pyruvate kinase	pyruv_kin: pyruvate kinase~[G] COG0469 Pyruvate kinase	gene	gene611	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_614
CH54_615	CH54_615	msbB	msbB	667250	668212	-	lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase	lipid_A_msbB: lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase~[M] COG1560 Lauroyl/myristoyl acyltransferase	gene	gene612	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_615
CH54_616	CH54_616		CH54_616	668302	669618	-	lysM domain protein	[M] COG0739 Membrane proteins related to metalloendopeptidases	gene	gene613	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_616
CH54_617	CH54_617		CH54_617	669639	670595	-	periplasmic solute binding family protein	[P] COG4531 ABC-type Zn2+ transport system%2C periplasmic component/surface adhesin	gene	gene614	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_617
CH54_618	CH54_618		CH54_618	670671	671429	+	ABC transporter family protein	[P] COG1121 ABC-type Mn/Zn transport systems%2C ATPase component	gene	gene615	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_618
CH54_619	CH54_619		CH54_619	671426	672211	+	ABC 3 transport family protein	[P] COG1108 ABC-type Mn2+/Zn2+ transport systems%2C permease components	gene	gene616	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_619
CH54_62	CH54_62		CH54_62	68334	69395	+	hypothetical protein	conserved hypothetical protein~[R] COG0628 Predicted permease	gene	gene61	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_62
CH54_620	CH54_620		CH54_620	672481	673962	+	amino acid/peptide transporter family protein	yjdL_sub1_fam: amino acid/peptide transporter family protein~[E] COG3104 Dipeptide/tripeptide permease	gene	gene617	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_620
CH54_621	CH54_621	ruvB	ruvB	674012	675016	-	Holliday junction DNA helicase RuvB	ruvB: Holliday junction DNA helicase RuvB~[L] COG2255 Holliday junction resolvasome%2C helicase subunit	gene	gene618	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_621
CH54_622	CH54_622	ruvA	ruvA	675057	675674	-	Holliday junction DNA helicase RuvA	ruvA: Holliday junction DNA helicase RuvA~[L] COG0632 Holliday junction resolvasome%2C DNA-binding subunit	gene	gene619	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_622
CH54_623	CH54_623	ruvC	ruvC	675797	676318	-	crossover junction endodeoxyribonuclease RuvC	ruvC: crossover junction endodeoxyribonuclease RuvC~[L] COG0817 Holliday junction resolvasome%2C endonuclease subunit	gene	gene620	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_623
CH54_624	CH54_624		CH54_624	676427	677170	-	DNA-binding regulatory%2C YebC/PmpR family protein	[S] COG0217 Uncharacterized conserved protein	gene	gene621	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_624
CH54_625	CH54_625		CH54_625	677193	677675	-	NUDIX domain protein	[LR] COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes	gene	gene622	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_625
CH54_626	CH54_626		CH54_626	677668	677763	-	hypothetical protein		gene	gene623	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_626
CH54_627	CH54_627	aspS	aspS	677763	679559	-	aspartate--tRNA ligase	aspS_bact: aspartate--tRNA ligase~[J] COG0173 Aspartyl-tRNA synthetase	gene	gene624	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_627
CH54_628	CH54_628		CH54_628	679863	680438	+	isochorismatase family protein	[Q] COG1335 Amidases related to nicotinamidase	gene	gene625	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_628
CH54_629	CH54_629		CH54_629	680630	681445	+	hypothetical protein	conserved hypothetical protein~[S] COG1801 Uncharacterized conserved protein	gene	gene626	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_629
CH54_63	CH54_63		CH54_63	69460	69573	-	hypothetical protein	conserved hypothetical protein	gene	gene62	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_63
CH54_630	CH54_630		CH54_630	681638	682033	+	MAPEG family protein	[R] COG3788 Uncharacterized relative of glutathione S-transferase%2C MAPEG superfamily	gene	gene627	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_630
CH54_631	CH54_631	cmoA	cmoA	682185	683039	+	tRNA (cmo5U34)-methyltransferase	[QR] COG0500 SAM-dependent methyltransferases	gene	gene628	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_631
CH54_632	CH54_632	cmoB	cmoB	683036	684007	+	tRNA (mo5U34)-methyltransferase	[QR] COG0500 SAM-dependent methyltransferases	gene	gene629	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_632
CH54_633	CH54_633		CH54_633	684087	684854	-	cutC family protein	[P] COG3142 Uncharacterized protein involved in copper resistance	gene	gene630	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_633
CH54_634	CH54_634		CH54_634	685104	685664	-	yecM family protein	[S] COG3102 Uncharacterized protein conserved in bacteria	gene	gene631	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_634
CH54_635	CH54_635	argS	argS	685982	687712	+	arginine--tRNA ligase	argS: arginine--tRNA ligase~[J] COG0018 Arginyl-tRNA synthetase	gene	gene632	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_635
CH54_636	CH54_636	mviN	mviN	687803	689341	-	murein biosynthesis integral membrane protein MurJ	murJ_mviN: murein biosynthesis integral membrane protein MurJ~[R] COG0728 Uncharacterized membrane protein%2C putative virulence factor	gene	gene633	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_636
CH54_637	CH54_637		CH54_637	689589	690530	-	oxidoreductase%2C NAD-binding Rossmann fold family protein	[R] COG0673 Predicted dehydrogenases and related proteins	gene	gene634	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_637
CH54_638	CH54_638		CH54_638	690546	691187	-	hypothetical protein	conserved hypothetical protein~[S] COG3132 Uncharacterized protein conserved in bacteria	gene	gene635	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_638
CH54_639	CH54_639		CH54_639	691195	691779	-	acetyltransferase family protein	[J] COG1670 Acetyltransferases%2C including N-acetylases of ribosomal proteins	gene	gene636	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_639
CH54_64	CH54_64		CH54_64	69889	70473	-	bacterial regulatory s%2C luxR family protein	[K] COG2771 DNA-binding HTH domain-containing proteins	gene	gene63	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_64
CH54_640	CH54_640		CH54_640	692136	693341	+	major Facilitator Superfamily protein	[GEPR] COG0477 Permeases of the major facilitator superfamily	gene	gene637	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_640
CH54_641	CH54_641		CH54_641	693569	694132	+	hypothetical protein	conserved hypothetical protein	gene	gene638	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_641
CH54_642	CH54_642		CH54_642	694174	694734	-	nitrate reductase delta subunit	[R] COG3381 Uncharacterized component of anaerobic dehydrogenases	gene	gene639	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_642
CH54_643	CH54_643		CH54_643	694808	695545	-	PHP domain protein	[ER] COG1387 Histidinol phosphatase and related hydrolases of the PHP family	gene	gene640	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_643
CH54_644	CH54_644		CH54_644	695691	696632	-	D-isomer specific 2-hydroxyacid dehydrogenase%2C NAD binding domain protein	[HE] COG0111 Phosphoglycerate dehydrogenase and related dehydrogenases	gene	gene641	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_644
CH54_645	CH54_645		CH54_645	696852	696941	+	tRNA-Ser		tRNA	gene642	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_645
CH54_646	CH54_646		CH54_646	697006	697377	+	hypothetical protein		gene	gene643	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_646
CH54_647	CH54_647		CH54_647	697689	698579	+	glycerophosphoryl diester phosphodiesterase family protein	[C] COG0584 Glycerophosphoryl diester phosphodiesterase	gene	gene644	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_647
CH54_648	CH54_648		CH54_648	698720	698809	+	tRNA-Ser		tRNA	gene645	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_648
CH54_649	CH54_649		CH54_649	698890	699021	-	putative inner membrane domain protein		gene	gene646	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_649
CH54_65	CH54_65		CH54_65	70723	71844	-	FAD dependent oxidoreductase family protein	[E] COG0665 Glycine/D-amino acid oxidases (deaminating)	gene	gene64	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_65
CH54_650	CH54_650	sulP	sulP	699487	701184	+	sulfate permease family protein	sulP: sulfate permease family protein~[P] COG0659 Sulfate permease and related transporters (MFS superfamily)	gene	gene647	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_650
CH54_651	CH54_651	kdsA	kdsA	701295	702149	-	3-deoxy-8-phosphooctulonate synthase	KDO8P_synth: 3-deoxy-8-phosphooctulonate synthase~[M] COG2877 3-deoxy-D-manno-octulosonic acid (KDO) 8-phosphate synthase	gene	gene648	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_651
CH54_652	CH54_652		CH54_652	702290	703099	-	tetratricopeptide repeat family protein	[S] COG2912 Uncharacterized conserved protein	gene	gene649	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_652
CH54_653	CH54_653		CH54_653	703096	703497	-	invasion expression up-regulator%2C SirB family protein	[S] COG3094 Uncharacterized protein conserved in bacteria	gene	gene650	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_653
CH54_654	CH54_654	prmC	prmC	703540	704370	-	protein-(glutamine-N5) methyltransferase%2C release factor-specific	RF_mod_PrmC: protein-(glutamine-N5) methyltransferase%2C release factor-specific~[J] COG2890 Methylase of polypeptide chain release factors	gene	gene651	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_654
CH54_655	CH54_655	prfA	prfA	704370	705452	-	peptide chain release factor 1	prfA: peptide chain release factor 1~[J] COG0216 Protein chain release factor A	gene	gene652	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_655
CH54_656	CH54_656	hemA	hemA	705484	706746	-	glutamyl-tRNA reductase	hemA: glutamyl-tRNA reductase~[H] COG0373 Glutamyl-tRNA reductase	gene	gene653	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_656
CH54_657	CH54_657	lolB	lolB	707076	707699	+	outer membrane lipoprotein LolB	lolB: outer membrane lipoprotein LolB~[M] COG3017 Outer membrane lipoprotein involved in outer membrane biogenesis	gene	gene654	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_657
CH54_658	CH54_658	ispE	ispE	707701	708582	+	4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase	ispE: 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase~[I] COG1947 4-diphosphocytidyl-2C-methyl-D-erythritol 2-phosphate synthase	gene	gene655	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_658
CH54_659	CH54_659	prs	prs	708781	709728	+	ribose-phosphate diphosphokinase family protein	ribP_PPkin: ribose-phosphate diphosphokinase family protein~[FE] COG0462 Phosphoribosylpyrophosphate synthetase	gene	gene656	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_659
CH54_66	CH54_66		CH54_66	72125	72379	-	bssS family protein		gene	gene65	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_66
CH54_660	CH54_660		CH54_660	710115	710390	-	hypothetical protein	conserved hypothetical protein	gene	gene657	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_660
CH54_661	CH54_661	pth	pth	710722	711312	+	aminoacyl-tRNA hydrolase	pth: aminoacyl-tRNA hydrolase~[J] COG0193 Peptidyl-tRNA hydrolase	gene	gene658	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_661
CH54_662	CH54_662		CH54_662	711367	711825	-	hypothetical protein	conserved hypothetical protein	gene	gene659	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_662
CH54_663	CH54_663		CH54_663	712093	713184	+	50S ribosome-binding GTPase family protein	[J] COG0012 Predicted GTPase%2C probable translation factor	gene	gene660	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_663
CH54_664	CH54_664		CH54_664	713222	714214	+	yjbR family protein	[S] COG2315 Uncharacterized protein conserved in bacteria	gene	gene661	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_664
CH54_665	CH54_665		CH54_665	714504	715199	+	lysM domain protein	[M] COG0739 Membrane proteins related to metalloendopeptidases	gene	gene662	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_665
CH54_666	CH54_666		CH54_666	715306	715944	-	ribose/Galactose Isomerase family protein	[G] COG0698 Ribose 5-phosphate isomerase RpiB	gene	gene663	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_666
CH54_667	CH54_667		CH54_667	716339	717004	-	yodA lipocalin-like domain protein	[R] COG3443 Predicted periplasmic or secreted protein	gene	gene664	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_667
CH54_668	CH54_668		CH54_668	717086	718126	-	branched-chain amino acid transport system / permease component family protein	[G] COG1172 Ribose/xylose/arabinose/galactoside ABC-type transport systems%2C permease components	gene	gene665	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_668
CH54_669	CH54_669		CH54_669	718146	719630	-	ABC transporter family protein	[G] COG1129 ABC-type sugar transport system%2C ATPase component	gene	gene666	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_669
CH54_67	CH54_67		CH54_67	72673	72918	-	dinI-like family protein		gene	gene66	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_67
CH54_670	CH54_670		CH54_670	719821	720750	-	periplasmic binding domain protein	[G] COG1879 ABC-type sugar transport system%2C periplasmic component	gene	gene667	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_670
CH54_671	CH54_671		CH54_671	721324	721896	-	hutD family protein	[S] COG3758 Uncharacterized protein conserved in bacteria	gene	gene668	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_671
CH54_672	CH54_672	hutF	hutF	721896	723266	-	formiminoglutamate deiminase	hutF: formiminoglutamate deiminase~[FR] COG0402 Cytosine deaminase and related metal-dependent hydrolases	gene	gene669	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_672
CH54_673	CH54_673	hutC	hutC	723416	724183	+	histidine utilization repressor	his_ut_repres: histidine utilization repressor~[K] COG2188 Transcriptional regulators	gene	gene670	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_673
CH54_674	CH54_674	hutI	hutI	724319	725539	+	imidazolonepropionase	hutI: imidazolonepropionase~[Q] COG1228 Imidazolonepropionase and related amidohydrolases	gene	gene671	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_674
CH54_675	CH54_675	hutG	hutG	725536	726345	+	N-formylglutamate deformylase	hutG_amidohyd: N-formylglutamate deformylase~[E] COG3741 N-formylglutamate amidohydrolase	gene	gene672	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_675
CH54_676	CH54_676		CH54_676	726635	727717	-	gram-negative porin family protein	[M] COG3203 Outer membrane protein (porin)	gene	gene673	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_676
CH54_677	CH54_677	astE	astE	728440	729432	-	succinylglutamate desuccinylase	arg_catab_astE: succinylglutamate desuccinylase~[E] COG2988 Succinylglutamate desuccinylase	gene	gene674	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_677
CH54_678	CH54_678	astB	astB	729515	730858	-	succinylarginine dihydrolase	arg_catab_astB: succinylarginine dihydrolase~[E] COG3724 Succinylarginine dihydrolase	gene	gene675	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_678
CH54_679	CH54_679	astD	astD	730918	732399	-	succinylglutamate-semialdehyde dehydrogenase	arg_catab_astD: succinylglutamate-semialdehyde dehydrogenase~[C] COG1012 NAD-dependent aldehyde dehydrogenases	gene	gene676	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_679
CH54_68	CH54_68	pyrC	pyrC	73035	74081	-	dihydroorotase%2C homodimeric type	pyrC_dimer: dihydroorotase%2C homodimeric type~[F] COG0418 Dihydroorotase	gene	gene67	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_68
CH54_680	CH54_680	astA	astA	732396	733433	-	arginine N-succinyltransferase	arg_catab_AstA: arginine N-succinyltransferase~[E] COG3138 Arginine/ornithine N-succinyltransferase beta subunit	gene	gene677	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_680
CH54_681	CH54_681	astC	astC	733491	734735	-	succinylornithine transaminase family protein	arg_catab_astC: succinylornithine transaminase family protein~[E] COG4992 Ornithine/acetylornithine aminotransferase	gene	gene678	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_681
CH54_682	CH54_682		CH54_682	735347	736780	-	aminotransferase class I and II family protein	[KE] COG1167 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs	gene	gene680	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_682
CH54_683	CH54_683		CH54_683	735183	735350	+	hypothetical protein		gene	gene679	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_683
CH54_684	CH54_684		CH54_684	736964	738418	+	bacterial Cytochrome Ubiquinol Oxidase family protein	[C] COG1271 Cytochrome bd-type quinol oxidase%2C subunit 1	gene	gene681	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_684
CH54_685	CH54_685	cydB	cydB	738418	739425	+	cytochrome d ubiquinol oxidase%2C subunit II	cydB: cytochrome d ubiquinol oxidase%2C subunit II~[C] COG1294 Cytochrome bd-type quinol oxidase%2C subunit 2	gene	gene682	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_685
CH54_686	CH54_686		CH54_686	739659	741440	+	histidine kinase family protein	[T] COG3850 Signal transduction histidine kinase%2C nitrate/nitrite-specific	gene	gene683	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_686
CH54_687	CH54_687		CH54_687	741479	742435	-	bacterial regulatory helix-turn-helix%2C lysR family protein	[K] COG0583 Transcriptional regulator	gene	gene684	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_687
CH54_688	CH54_688		CH54_688	742945	743790	+	siderophore-interacting FAD-binding domain protein	[P] COG2375 Siderophore-interacting protein	gene	gene685	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_688
CH54_689	CH54_689	chaA	chaA	744010	745110	+	calcium/proton exchanger family protein	caca2: calcium/proton exchanger family protein~[P] COG0387 Ca2+/H+ antiporter	gene	gene686	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_689
CH54_69	CH54_69		CH54_69	74468	74755	+	antibiotic biosynthesis monooxygenase family protein	[S] COG1359 Uncharacterized conserved protein	gene	gene68	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_69
CH54_690	CH54_690		CH54_690	745210	745998	-	phoH-like family protein	[T] COG1702 Phosphate starvation-inducible protein PhoH%2C predicted ATPase	gene	gene687	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_690
CH54_691	CH54_691		CH54_691	746066	746311	-	hypothetical protein	conserved hypothetical protein	gene	gene688	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_691
CH54_692	CH54_692		CH54_692	746646	747353	-	acetyltransferase family protein	[J] COG1670 Acetyltransferases%2C including N-acetylases of ribosomal proteins	gene	gene689	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_692
CH54_693	CH54_693	pgaD	pgaD	747556	748023	-	poly-beta-1%2C6-N-acetyl-D-glucosamine biosynthesis protein PgaD	PGA_PgaD: poly-beta-1%2C6-N-acetyl-D-glucosamine biosynthesis protein PgaD	gene	gene690	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_693
CH54_694	CH54_694	pgaC	pgaC	748020	749393	-	poly-beta-1%2C6 N-acetyl-D-glucosamine synthase	pgaC_IcaA: poly-beta-1%2C6 N-acetyl-D-glucosamine synthase~[M] COG1215 Glycosyltransferases%2C probably involved in cell wall biogenesis	gene	gene691	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_694
CH54_695	CH54_695	pgaB	pgaB	749344	751368	-	poly-beta-1%2C6-N-acetyl-D-glucosamine N-deacetylase PgaB	deacetyl_PgaB: poly-beta-1%2C6-N-acetyl-D-glucosamine N-deacetylase PgaB~[G] COG0726 Predicted xylanase/chitin deacetylase	gene	gene692	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_695
CH54_696	CH54_696	pgaA	pgaA	751380	753848	-	poly-beta-1%2C6 N-acetyl-D-glucosamine export porin PgaA	PGA_TPR_OMP: poly-beta-1%2C6 N-acetyl-D-glucosamine export porin PgaA	gene	gene693	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_696
CH54_697	CH54_697		CH54_697	754531	755748	-	hypothetical protein	creatinase/Prolidase N-terminal domain protein~[E] COG0006 Xaa-Pro aminopeptidase	gene	gene694	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_697
CH54_698	CH54_698	fhuF	fhuF	755799	756602	-	siderophore-iron reductase FhuF	fe_III_red_FhuF: siderophore-iron reductase FhuF~[R] COG4114 Uncharacterized Fe-S protein	gene	gene695	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_698
CH54_699	CH54_699		CH54_699	756760	757389	-	threonyl and Alanyl tRNA synthetase second additional domain protein	[R] COG2872 Predicted metal-dependent hydrolases related to alanyl-tRNA synthetase HxxxH domain	gene	gene696	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_699
CH54_7	CH54_7	fabF	fabF	7116	8390	-	beta-ketoacyl-acyl-carrier-protein synthase II	fabF: beta-ketoacyl-acyl-carrier-protein synthase II~[IQ] COG0304 3-oxoacyl-(acyl-carrier-protein) synthase	gene	gene6	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_7
CH54_70	CH54_70		CH54_70	74825	78283	-	ribonuclease%2C Rne/Rng family domain protein	RNaseEG: ribonuclease%2C Rne/Rng family domain protein~[J] COG1530 Ribonucleases G and E	gene	gene69	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_70
CH54_700	CH54_700		CH54_700	757476	758408	+	bacterial regulatory helix-turn-helix%2C lysR family protein	[K] COG0583 Transcriptional regulator	gene	gene697	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_700
CH54_701	CH54_701	tehB	tehB	758460	759329	-	tellurite resistance protein TehB	tehB: tellurite resistance protein TehB~[QR] COG0500 SAM-dependent methyltransferases	gene	gene698	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_701
CH54_702	CH54_702		CH54_702	759484	759798	-	cytochrome c family protein	[C] COG2863 Cytochrome c553	gene	gene699	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_702
CH54_703	CH54_703		CH54_703	759795	760295	-	thioredoxin family protein	[OC] COG0526 Thiol-disulfide isomerase and thioredoxins	gene	gene700	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_703
CH54_704	CH54_704		CH54_704	760285	760998	-	ABC transporter family protein	[V] COG1136 ABC-type antimicrobial peptide transport system%2C ATPase component	gene	gene701	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_704
CH54_705	CH54_705		CH54_705	761002	762159	-	ftsX-like permease family protein	[V] COG0577 ABC-type antimicrobial peptide transport system%2C permease component	gene	gene702	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_705
CH54_706	CH54_706		CH54_706	762149	763441	-	ftsX-like permease family protein	[V] COG0577 ABC-type antimicrobial peptide transport system%2C permease component	gene	gene703	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_706
CH54_707	CH54_707		CH54_707	763444	764847	-	YHS domain protein	[S] COG4393 Predicted membrane protein	gene	gene704	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_707
CH54_708	CH54_708		CH54_708	764984	765511	-	fe2+ transport family protein	[P] COG3470 Uncharacterized protein probably involved in high-affinity Fe2+ transport	gene	gene705	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_708
CH54_709	CH54_709		CH54_709	765579	767471	-	iron permease FTR1 family protein	[P] COG0672 High-affinity Fe2+/Pb2+ permease	gene	gene706	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_709
CH54_71	CH54_71		CH54_71	78859	79818	+	pseudouridine synthase%2C RluA family protein	rluA_subfam: pseudouridine synthase%2C RluA family protein~[J] COG0564 Pseudouridylate synthases%2C 23S RNA-specific	gene	gene70	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_71
CH54_710	CH54_710		CH54_710	767703	768230	+	hypothetical protein		gene	gene707	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_710
CH54_711	CH54_711		CH54_711	768571	770937	+	penicillin amidase family protein	[R] COG2366 Protein related to penicillin acylase	gene	gene708	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_711
CH54_712	CH54_712		CH54_712	771054	772694	-	major Facilitator Superfamily protein	[GEPR] COG0477 Permeases of the major facilitator superfamily	gene	gene709	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_712
CH54_713	CH54_713	glsA	glsA	772804	773811	-	glutaminase A	gln_ase: glutaminase A~[E] COG2066 Glutaminase	gene	gene710	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_713
CH54_714	CH54_714		CH54_714	774251	775030	-	xylose isomerase-like TIM barrel family protein	[G] COG3622 Hydroxypyruvate isomerase	gene	gene711	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_714
CH54_715	CH54_715		CH54_715	775033	775656	-	hypothetical protein	class II Aldolase and Adducin N-terminal domain protein~[G] COG0235 Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases	gene	gene712	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_715
CH54_716	CH54_716		CH54_716	775653	776915	-	hypothetical protein	conserved hypothetical protein~[S] COG3395 Uncharacterized protein conserved in bacteria	gene	gene713	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_716
CH54_717	CH54_717		CH54_717	777262	778041	+	deoR-like helix-turn-helix domain protein	[KG] COG1349 Transcriptional regulators of sugar metabolism	gene	gene714	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_717
CH54_718	CH54_718		CH54_718	778290	779963	+	PAS fold family protein	[T] COG3290 Signal transduction histidine kinase regulating citrate/malate metabolism	gene	gene715	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_718
CH54_719	CH54_719		CH54_719	779989	780675	+	response regulator	[KT] COG4565 Response regulator of citrate/malate metabolism	gene	gene716	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_719
CH54_72	CH54_72	maf	maf	79865	80485	-	septum formation protein Maf	maf: septum formation protein Maf~[D] COG0424 Nucleotide-binding protein implicated in inhibition of septum formation	gene	gene71	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_72
CH54_720	CH54_720		CH54_720	780752	782110	-	2-hydroxycarboxylate transporter family protein	[C] COG3493 Na+/citrate symporter	gene	gene717	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_720
CH54_721	CH54_721		CH54_721	783147	784667	+	amino acid permease family protein	[E] COG1113 Gamma-aminobutyrate permease and related permeases	gene	gene718	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_721
CH54_722	CH54_722		CH54_722	784818	785276	-	acetyltransferase domain protein	[KR] COG0454 Histone acetyltransferase HPA2 and related acetyltransferases	gene	gene719	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_722
CH54_723	CH54_723		CH54_723	785532	786092	+	phage late control protein	[R] COG3500 Phage protein D	gene	gene720	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_723
CH54_724	CH54_724		CH54_724	786167	786382	+	ogr/Delta-like zinc finger family protein		gene	gene721	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_724
CH54_725	CH54_725		CH54_725	786604	786689	-	tRNA-Leu		tRNA	gene722	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_725
CH54_726	CH54_726		CH54_726	786700	786773	-	tRNA-Cys		tRNA	gene723	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_726
CH54_727	CH54_727		CH54_727	786826	786901	-	tRNA-Gly		tRNA	gene724	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_727
CH54_728	CH54_728	pgsA	pgsA	787046	787594	-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	pgsA: CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase~[I] COG0558 Phosphatidylglycerophosphate synthase	gene	gene725	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_728
CH54_729	CH54_729	uvrC	uvrC	787653	789518	-	excinuclease ABC subunit C	uvrC: excinuclease ABC subunit C~[L] COG0322 Nuclease subunit of the excinuclease complex	gene	gene726	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_729
CH54_73	CH54_73		CH54_73	80588	81118	+	hypothetical protein	conserved hypothetical protein~[R] COG1399 Predicted metal-binding%2C possibly nucleic acid-binding protein	gene	gene72	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_73
CH54_730	CH54_730		CH54_730	789478	790134	-	bacterial regulatory s%2C luxR family protein	[TK] COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain	gene	gene727	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_730
CH54_731	CH54_731		CH54_731	790818	791042	+	hypothetical protein	conserved hypothetical protein	gene	gene728	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_731
CH54_732	CH54_732		CH54_732	791527	791781	-	putative membrane protein		gene	gene729	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_732
CH54_733	CH54_733		CH54_733	791831	793321	-	alpha amylase%2C catalytic domain protein	[G] COG0366 Glycosidases	gene	gene730	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_733
CH54_734	CH54_734		CH54_734	793550	793972	+	hypothetical protein	[QR] COG0500 SAM-dependent methyltransferases	gene	gene731	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_734
CH54_735	CH54_735		CH54_735	794429	794815	+	cupin domain protein		gene	gene732	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_735
CH54_736	CH54_736		CH54_736	795015	795533	-	dinB family protein	[S] COG2318 Uncharacterized protein conserved in bacteria	gene	gene733	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_736
CH54_737	CH54_737		CH54_737	797078	798001	+	glycosyl transferase 2 family protein	[M] COG0463 Glycosyltransferases involved in cell wall biogenesis	gene	gene734	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_737
CH54_738	CH54_738		CH54_738	797988	799427	+	glucosyl transferase GtrII family protein		gene	gene735	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_738
CH54_739	CH54_739		CH54_739	799465	800007	-	hypothetical protein		gene	gene736	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_739
CH54_74	CH54_74	rpmF	rpmF	81124	81291	+	ribosomal protein L32	rpmF_bact: ribosomal protein L32~[J] COG0333 Ribosomal protein L32	gene	gene73	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_74
CH54_740	CH54_740		CH54_740	800290	800805	+	phage integrase family protein	[L] COG0582 Integrase	gene	gene737	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_740
CH54_741	CH54_741		CH54_741	800790	800999	+	phage integrase family protein	[L] COG0582 Integrase	gene	gene738	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_741
CH54_742	CH54_742		CH54_742	801010	801085	-	tRNA-Lys		tRNA	gene739	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_742
CH54_743	CH54_743		CH54_743	801437	802864	+	amino acid permease family protein	[E] COG1113 Gamma-aminobutyrate permease and related permeases	gene	gene740	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_743
CH54_744	CH54_744		CH54_744	803182	804366	-	mutarotase%2C YjhT family protein	muta_rot_YjhT: mutatrotase%2C YjhT family protein~[S] COG3055 Uncharacterized protein conserved in bacteria	gene	gene741	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_744
CH54_745	CH54_745		CH54_745	804703	805188	+	helix-turn-helix family protein		gene	gene742	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_745
CH54_746	CH54_746		CH54_746	805234	805473	-	winged helix-turn-helix DNA-binding family protein	[K] COG3423 Predicted transcriptional regulator	gene	gene743	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_746
CH54_747	CH54_747		CH54_747	805695	806477	+	bacterial regulatory s%2C luxR family protein		gene	gene744	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_747
CH54_748	CH54_748		CH54_748	806505	807692	+	major Facilitator Superfamily protein	[GEPR] COG0477 Permeases of the major facilitator superfamily	gene	gene745	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_748
CH54_749	CH54_749	wrbA	wrbA	807873	808472	+	quinone oxidoreductase%2C type IV	NAD(P)H:quinone oxidoreductase%2C type IV~flav_wrbA: NAD(P)H:quinone oxidoreductase%2C type IV~[R] COG0655 Multimeric flavodoxin WrbA	gene	gene746	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_749
CH54_75	CH54_75	plsX	plsX	81325	82359	+	fatty acid/phospholipid synthesis protein PlsX	plsX: fatty acid/phospholipid synthesis protein PlsX~[I] COG0416 Fatty acid/phospholipid biosynthesis enzyme	gene	gene74	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_75
CH54_750	CH54_750		CH54_750	808786	810096	-	Dyp-type peroxidase family protein	dyp_perox_fam: Dyp-type peroxidase family protein~[P] COG2837 Predicted iron-dependent peroxidase	gene	gene747	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_750
CH54_751	CH54_751		CH54_751	810106	811230	-	imelysin family protein	[P] COG2822 Predicted periplasmic lipoprotein involved in iron transport	gene	gene748	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_751
CH54_752	CH54_752		CH54_752	811247	812107	-	iron permease FTR1 family protein	[P] COG0672 High-affinity Fe2+/Pb2+ permease	gene	gene749	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_752
CH54_753	CH54_753	putP	putP	812396	813880	-	sodium/proline symporter	na_Pro_sym: sodium/proline symporter~[ER] COG0591 Na+/proline symporter	gene	gene750	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_753
CH54_754	CH54_754		CH54_754	814407	818396	+	delta-1-pyrroline-5-carboxylate dehydrogenase	D1pyr5carbox3: delta-1-pyrroline-5-carboxylate dehydrogenase~[E] COG0506 Proline dehydrogenase	gene	gene751	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_754
CH54_755	CH54_755		CH54_755	818466	818567	-	hypothetical protein		gene	gene752	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_755
CH54_756	CH54_756		CH54_756	818705	818998	+	hypothetical protein		gene	gene753	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_756
CH54_757	CH54_757		CH54_757	818998	819369	+	hypothetical protein	conserved hypothetical protein~[K] COG0640 Predicted transcriptional regulators	gene	gene754	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_757
CH54_758	CH54_758		CH54_758	819473	820228	-	ABC transporter family protein	[E] COG1126 ABC-type polar amino acid transport system%2C ATPase component	gene	gene755	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_758
CH54_759	CH54_759		CH54_759	820231	820893	-	amino ABC transporter%2C permease%2C 3-TM region%2C His/Glu/Gln/Arg/opine family domain protein	HEQRo_perm_3TM: amino ABC transporter%2C permease%2C 3-TM region%2C His/Glu/Gln/Arg/opine family domain protein~[E] COG0765 ABC-type amino acid transport system%2C permease component	gene	gene756	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_759
CH54_76	CH54_76	fabH	fabH	82366	83319	+	3-oxoacyl-[acyl-carrier-] synthase III family protein	fabH: 3-oxoacyl-[acyl-carrier-] synthase III family protein~[I] COG0332 3-oxoacyl-[acyl-carrier-protein] synthase III	gene	gene75	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_76
CH54_760	CH54_760		CH54_760	820893	821693	-	bacterial extracellular solute-binding s%2C 3 family protein	[ET] COG0834 ABC-type amino acid transport/signal transduction systems%2C periplasmic component/domain	gene	gene757	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_760
CH54_761	CH54_761		CH54_761	821812	822804	-	pyridoxal phosphate-dependent enzyme%2C D-cysteine desulfhydrase family protein	ACC_deam_rel: pyridoxal phosphate-dependent enzymes%2C D-cysteine desulfhydrase family protein~[E] COG2515 1-aminocyclopropane-1-carboxylate deaminase	gene	gene758	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_761
CH54_762	CH54_762	fliZ	fliZ	823183	823707	-	flagellar regulatory protein FliZ	fliZ: flagellar regulatory protein FliZ	gene	gene759	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_762
CH54_763	CH54_763		CH54_763	823763	824485	-	RNA polymerase sigma factor%2C FliA/WhiG family protein	fliA_WhiG: RNA polymerase sigma factor%2C FliA/WhiG family protein~[K] COG1191 DNA-directed RNA polymerase specialized sigma subunit	gene	gene760	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_763
CH54_764	CH54_764		CH54_764	824801	826303	-	hypothetical protein	bacterial flagellin C-terminal helical region family protein~[N] COG1344 Flagellin and related hook-associated proteins	gene	gene761	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_764
CH54_765	CH54_765		CH54_765	826601	828001	+	flagellar hook-associated family protein	[N] COG1345 Flagellar capping protein	gene	gene762	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_765
CH54_766	CH54_766	fliS	fliS	828012	828410	+	flagellar protein FliS	fliS: flagellar protein FliS~[NUO] COG1516 Flagellin-specific chaperone FliS	gene	gene763	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_766
CH54_767	CH54_767		CH54_767	828422	828784	+	flagellar FliT family protein		gene	gene764	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_767
CH54_768	CH54_768		CH54_768	829060	829929	+	helix-turn-helix domain protein	[K] COG2207 AraC-type DNA-binding domain-containing proteins	gene	gene765	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_768
CH54_769	CH54_769		CH54_769	830242	833193	+	HAMP domain protein	[T] COG2206 HD-GYP domain	gene	gene766	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_769
CH54_77	CH54_77	fabD	fabD	83375	84304	+	malonyl CoA-acyl carrier protein transacylase	fabD: malonyl CoA-acyl carrier protein transacylase~[I] COG0331 (acyl-carrier-protein) S-malonyltransferase	gene	gene76	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_77
CH54_770	CH54_770		CH54_770	833275	833883	+	hhH-GPD superbase excision DNA repair family protein	[L] COG0122 3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase	gene	gene767	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_770
CH54_771	CH54_771		CH54_771	833915	834223	-	hypothetical protein		gene	gene768	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_771
CH54_772	CH54_772	fliE	fliE	834403	834714	-	flagellar hook-basal body complex protein FliE	fliE: flagellar hook-basal body complex protein FliE~[NU] COG1677 Flagellar hook-basal body protein	gene	gene769	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_772
CH54_773	CH54_773	fliF	fliF	835243	836961	+	flagellar M-ring protein FliF	fliF: flagellar M-ring protein FliF~[NU] COG1766 Flagellar biosynthesis/type III secretory pathway lipoprotein	gene	gene770	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_773
CH54_774	CH54_774	fliG	fliG	836958	837950	+	flagellar motor switch protein FliG	fliG: flagellar motor switch protein FliG~[N] COG1536 Flagellar motor switch protein	gene	gene771	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_774
CH54_775	CH54_775		CH54_775	837943	838665	+	flagellar assembly FliH family protein	[NU] COG1317 Flagellar biosynthesis/type III secretory pathway protein	gene	gene772	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_775
CH54_776	CH54_776	fliI	fliI	838665	840029	+	flagellar protein export ATPase FliI	fliI_clade1: flagellar protein export ATPase FliI~[NU] COG1157 Flagellar biosynthesis/type III secretory pathway ATPase	gene	gene773	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_776
CH54_777	CH54_777	fliJ	fliJ	840078	840524	+	flagellar export protein FliJ	flagell_FliJ: flagellar export protein FliJ~[NUO] COG2882 Flagellar biosynthesis chaperone	gene	gene774	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_777
CH54_778	CH54_778		CH54_778	840521	841915	+	flagellar hook-length control FliK family protein	[N] COG3144 Flagellar hook-length control protein	gene	gene775	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_778
CH54_779	CH54_779		CH54_779	842232	842702	+	flagellar basal body-associated FliL family protein	[N] COG1580 Flagellar basal body-associated protein	gene	gene776	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_779
CH54_78	CH54_78	fabG	fabG	84319	85053	+	3-oxoacyl-[acyl-carrier-protein] reductase	3oxo_ACP_reduc: 3-oxoacyl-[acyl-carrier-protein] reductase~[IQR] COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)	gene	gene77	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_78
CH54_780	CH54_780	fliM	fliM	842708	843712	+	flagellar motor switch protein FliM	fliM_switch: flagellar motor switch protein FliM~[N] COG1868 Flagellar motor switch protein	gene	gene777	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_780
CH54_781	CH54_781	fliN	fliN	843705	844121	+	flagellar motor switch protein FliN	fliN: flagellar motor switch protein FliN~[NU] COG1886 Flagellar motor switch/type III secretory pathway protein	gene	gene778	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_781
CH54_782	CH54_782	fliO	fliO	844121	844690	+	flagellar biosynthetic protein FliO	fliO_TIGR: flagellar biosynthetic protein FliO~[N] COG3190 Flagellar biogenesis protein	gene	gene779	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_782
CH54_783	CH54_783	fliP	fliP	844687	845439	+	flagellar biosynthetic protein FliP	fliP: flagellar biosynthetic protein FliP~[NU] COG1338 Flagellar biosynthesis pathway%2C component FliP	gene	gene780	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_783
CH54_784	CH54_784	fliQ	fliQ	845452	845721	+	flagellar biosynthetic protein FliQ	fliQ: flagellar biosynthetic protein FliQ~[NU] COG1987 Flagellar biosynthesis pathway%2C component FliQ	gene	gene781	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_784
CH54_785	CH54_785	fliR	fliR	845724	846506	+	flagellar biosynthetic protein FliR	fliR: flagellar biosynthetic protein FliR~[NU] COG1684 Flagellar biosynthesis pathway%2C component FliR	gene	gene782	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_785
CH54_786	CH54_786	flgL	flgL	846553	847587	-	flagellar hook-associated protein 3	flagell_flgL: flagellar hook-associated protein 3~[N] COG1344 Flagellin and related hook-associated proteins	gene	gene783	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_786
CH54_787	CH54_787	flgK	flgK	847639	849303	-	flagellar hook-associated protein FlgK	flgK_ends: flagellar hook-associated protein FlgK~[N] COG1256 Flagellar hook-associated protein	gene	gene784	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_787
CH54_788	CH54_788	flgJ	flgJ	849490	850452	-	flagellar rod assembly protein/muramidase FlgJ	flagell_FlgJ: flagellar rod assembly protein/muramidase FlgJ~[NU] COG1705 Muramidase (flagellum-specific)	gene	gene785	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_788
CH54_789	CH54_789		CH54_789	850452	851573	-	flagellar P-ring family protein	[N] COG1706 Flagellar basal-body P-ring protein	gene	gene786	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_789
CH54_79	CH54_79	acpP	acpP	85207	85443	+	acyl carrier protein	acyl_carrier: acyl carrier protein~[IQ] COG0236 Acyl carrier protein	gene	gene78	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_79
CH54_790	CH54_790		CH54_790	851585	852301	-	flagellar L-ring family protein	[N] COG2063 Flagellar basal body L-ring protein	gene	gene787	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_790
CH54_791	CH54_791	flgG	flgG	852393	853175	-	flagellar basal-body rod protein FlgG	flgG_G_neg: flagellar basal-body rod protein FlgG~[N] COG4786 Flagellar basal body rod protein	gene	gene788	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_791
CH54_792	CH54_792		CH54_792	853202	853957	-	flagellar hook-basal body family protein	flgEFG_subfam: flagellar hook-basal body family protein~[N] COG4787 Flagellar basal body rod protein	gene	gene789	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_792
CH54_793	CH54_793		CH54_793	853979	855262	-	flagellar hook-basal body family protein	flgEFG_subfam: flagellar hook-basal body family protein~[N] COG1749 Flagellar hook protein FlgE	gene	gene790	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_793
CH54_794	CH54_794		CH54_794	855388	856074	-	hypothetical protein	flagellar hook capping - N-terminal region family protein~[N] COG1843 Flagellar hook capping protein	gene	gene791	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_794
CH54_795	CH54_795	flgC	flgC	856090	856494	-	flagellar basal-body rod protein FlgC	flgC: flagellar basal-body rod protein FlgC~[N] COG1558 Flagellar basal body rod protein	gene	gene792	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_795
CH54_796	CH54_796	flgB	flgB	856500	856913	-	flagellar basal-body rod protein FlgB	flgB: flagellar basal-body rod protein FlgB~[N] COG1815 Flagellar basal body protein	gene	gene793	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_796
CH54_797	CH54_797	flgA	flgA	857097	857777	+	flagella basal body P-ring formation protein FlgA	flgA_cterm: flagella basal body P-ring formation protein FlgA~[NO] COG1261 Flagellar basal body P-ring biosynthesis protein	gene	gene794	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_797
CH54_798	CH54_798	flgM	flgM	857926	858225	+	flagellar biosynthesis anti-sigma factor FlgM	flgM_jcvi: flagellar biosynthesis anti-sigma factor FlgM~[KNU] COG2747 Negative regulator of flagellin synthesis (anti-sigma28 factor)	gene	gene795	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_798
CH54_799	CH54_799		CH54_799	858276	858716	+	flgN family protein	[NUO] COG3418 Flagellar biosynthesis/type III secretory pathway chaperone	gene	gene796	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_799
CH54_8	CH54_8		CH54_8	8390	8932	-	hxlR-like helix-turn-helix family protein	[K] COG1733 Predicted transcriptional regulators	gene	gene7	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_8
CH54_80	CH54_80	fabF	fabF	85541	86779	+	beta-ketoacyl-acyl-carrier-protein synthase II	fabF: beta-ketoacyl-acyl-carrier-protein synthase II~[IQ] COG0304 3-oxoacyl-(acyl-carrier-protein) synthase	gene	gene79	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_80
CH54_800	CH54_800		CH54_800	859102	859524	-	flagellar FlhE family protein		gene	gene798	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_800
CH54_801	CH54_801		CH54_801	858950	859105	+	hypothetical protein	conserved hypothetical protein	gene	gene797	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_801
CH54_802	CH54_802	flhA	flhA	859524	861602	-	flagellar biosynthesis protein FlhA	flhA: flagellar biosynthesis protein FlhA~[NU] COG1298 Flagellar biosynthesis pathway%2C component FlhA	gene	gene799	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_802
CH54_803	CH54_803	flhB	flhB	861602	862750	-	flagellar biosynthetic protein FlhB	flhB: flagellar biosynthetic protein FlhB~[NU] COG1377 Flagellar biosynthesis pathway%2C component FlhB	gene	gene800	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_803
CH54_804	CH54_804		CH54_804	863179	864822	+	subtilase family protein	[O] COG1404 Subtilisin-like serine proteases	gene	gene801	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_804
CH54_805	CH54_805		CH54_805	864918	865562	-	chemotaxis phosphatase%2C CheZ family protein	[NT] COG3143 Chemotaxis protein	gene	gene802	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_805
CH54_806	CH54_806		CH54_806	865572	865961	-	response regulator	[T] COG0784 FOG: CheY-like receiver	gene	gene803	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_806
CH54_807	CH54_807		CH54_807	866036	867085	-	cheB methylesterase family protein	[NT] COG2201 Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain	gene	gene804	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_807
CH54_808	CH54_808		CH54_808	867085	867945	-	methyltransferase domain protein	[NT] COG1352 Methylase of chemotaxis methyl-accepting proteins	gene	gene805	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_808
CH54_809	CH54_809		CH54_809	867974	869626	-	hypothetical protein	conserved hypothetical protein~[NT] COG0840 Methyl-accepting chemotaxis protein	gene	gene806	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_809
CH54_81	CH54_81	pabC	pabC	87149	87973	+	aminodeoxychorismate lyase	pabC_Proteo: aminodeoxychorismate lyase~[EH] COG0115 Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase	gene	gene80	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_81
CH54_810	CH54_810		CH54_810	869888	871561	-	hypothetical protein	conserved hypothetical protein~[NT] COG0840 Methyl-accepting chemotaxis protein	gene	gene807	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_810
CH54_811	CH54_811		CH54_811	871834	872331	-	cheW-like domain protein	[NT] COG0835 Chemotaxis signal transduction protein	gene	gene808	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_811
CH54_812	CH54_812		CH54_812	872384	874420	-	signal transducing histidine kinase%2C homodimeric domain protein	[NT] COG0643 Chemotaxis protein histidine kinase and related kinases	gene	gene809	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_812
CH54_813	CH54_813		CH54_813	874431	875654	-	membrane MotB of proton-channel complex MotA/MotB family protein	[N] COG1360 Flagellar motor protein	gene	gene810	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_813
CH54_814	CH54_814	motA	motA	875651	876538	-	flagellar motor stator protein MotA	motA1: flagellar motor stator protein MotA~[N] COG1291 Flagellar motor component	gene	gene811	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_814
CH54_815	CH54_815		CH54_815	876676	877257	-	flagellar transcriptional activator family protein		gene	gene812	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_815
CH54_816	CH54_816		CH54_816	877261	877611	-	flagellar transcriptional activator family protein		gene	gene813	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_816
CH54_817	CH54_817		CH54_817	878641	879060	+	universal stress family protein	[T] COG0589 Universal stress protein UspA and related nucleotide-binding proteins	gene	gene814	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_817
CH54_818	CH54_818		CH54_818	879183	879338	+	hypothetical protein	[R] COG2130 Putative NADP-dependent oxidoreductases	gene	gene815	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_818
CH54_819	CH54_819	mgtA	mgtA	879401	882103	-	magnesium-translocating P-type ATPase	ATPase-IIIB_Mg: magnesium-translocating P-type ATPase~[P] COG0474 Cation transport ATPase	gene	gene816	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_819
CH54_82	CH54_82		CH54_82	88034	89059	+	yceG-like family protein	[R] COG1559 Predicted periplasmic solute-binding protein	gene	gene81	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_82
CH54_820	CH54_820		CH54_820	882320	883018	-	mgtC family protein	[S] COG1285 Uncharacterized membrane protein	gene	gene817	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_820
CH54_821	CH54_821		CH54_821	883954	885693	+	hypothetical protein	conserved hypothetical protein~[NT] COG0840 Methyl-accepting chemotaxis protein	gene	gene818	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_821
CH54_822	CH54_822		CH54_822	885827	886018	-	dextransucrase DSRB family protein		gene	gene819	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_822
CH54_823	CH54_823		CH54_823	886277	886489	-	'Cold-shock' DNA-binding domain protein	[K] COG1278 Cold shock proteins	gene	gene820	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_823
CH54_824	CH54_824		CH54_824	886874	887908	+	bacterial regulatory s%2C lacI family protein	[K] COG1609 Transcriptional regulators	gene	gene821	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_824
CH54_825	CH54_825		CH54_825	888064	891219	+	glycosyl hydrolases 2 family protein	[G] COG3250 Beta-galactosidase/beta-glucuronidase	gene	gene822	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_825
CH54_826	CH54_826		CH54_826	891568	892596	+	NAD(P)H quinone oxidoreductase%2C PIG3 family protein	quinone_pig3: NAD(P)H quinone oxidoreductase%2C PIG3 family protein~[CR] COG0604 NADPH:quinone reductase and related Zn-dependent oxidoreductases	gene	gene823	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_826
CH54_827	CH54_827		CH54_827	892815	893300	+	inner membrane YlaC family protein		gene	gene824	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_827
CH54_828	CH54_828		CH54_828	893622	894080	+	asnC-type helix-turn-helix domain protein	[K] COG1522 Transcriptional regulators	gene	gene825	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_828
CH54_829	CH54_829		CH54_829	894159	895061	+	3-deoxy-D-manno-oct-2-ulosonic acid (Kdo) hydroxylase family protein		gene	gene826	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_829
CH54_83	CH54_83	tmk	tmk	89049	89687	+	dTMP kinase	DTMP_kinase: dTMP kinase~[F] COG0125 Thymidylate kinase	gene	gene82	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_83
CH54_830	CH54_830		CH54_830	895393	895593	+	ydfZ family protein		gene	gene827	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_830
CH54_831	CH54_831		CH54_831	895827	897152	-	histidine phosphatase super family protein		gene	gene828	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_831
CH54_832	CH54_832	glgC	glgC	897466	898743	+	glucose-1-phosphate adenylyltransferase	glgC: glucose-1-phosphate adenylyltransferase~[G] COG0448 ADP-glucose pyrophosphorylase	gene	gene829	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_832
CH54_833	CH54_833		CH54_833	898835	898927	+	putative membrane protein		gene	gene830	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_833
CH54_834	CH54_834		CH54_834	899001	899402	-	putative Zn-dependent hydrolases of the beta-lactamase fold protein	putative predicted Zn-dependent hydrolases of the beta-lactamase fold	gene	gene831	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_834
CH54_835	CH54_835		CH54_835	899396	900709	-	tyrosine phosphatase family protein	-tyrosine phosphatase family protein~[I] COG0671 Membrane-associated phospholipid phosphatase	gene	gene832	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_835
CH54_836	CH54_836		CH54_836	900702	902465	-	alpha/beta hydrolase family protein	[QR] COG0500 SAM-dependent methyltransferases	gene	gene833	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_836
CH54_837	CH54_837		CH54_837	902462	903100	-	acyltransferase family protein	[I] COG0204 1-acyl-sn-glycerol-3-phosphate acyltransferase	gene	gene834	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_837
CH54_838	CH54_838		CH54_838	903110	904030	-	cytidylyltransferase family protein	[R] COG4589 Predicted CDP-diglyceride synthetase/phosphatidate cytidylyltransferase	gene	gene835	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_838
CH54_839	CH54_839		CH54_839	904032	904631	-	CDP-alcohol phosphatidyltransferase family protein	[I] COG0558 Phosphatidylglycerophosphate synthase	gene	gene836	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_839
CH54_84	CH54_84	holB	holB	89687	90688	+	DNA polymerase III%2C delta' subunit	holB: DNA polymerase III%2C delta' subunit~[L] COG0470 ATPase involved in DNA replication	gene	gene83	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_84
CH54_840	CH54_840		CH54_840	904895	905638	-	hypothetical protein	pili and flagellar-assembly chaperone%2C PapD N-terminal domain protein~[NU] COG3121 P pilus assembly protein%2C chaperone PapD	gene	gene837	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_840
CH54_841	CH54_841		CH54_841	905699	908077	-	hypothetical protein	papC N-terminal domain protein~[NU] COG3188 P pilus assembly protein%2C porin PapC	gene	gene838	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_841
CH54_842	CH54_842		CH54_842	908196	908840	-	hypothetical protein	conserved hypothetical protein	gene	gene839	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_842
CH54_843	CH54_843		CH54_843	908963	909601	-	hypothetical protein	conserved hypothetical protein	gene	gene840	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_843
CH54_844	CH54_844		CH54_844	910473	911507	+	transposase family protein	[L] COG3547 Transposase and inactivated derivatives	gene	gene841	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_844
CH54_845	CH54_845		CH54_845	911651	911797	+	hypothetical protein		gene	gene842	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_845
CH54_846	CH54_846		CH54_846	912185	912988	+	glucose-regulated metallo-peptidase M90 family protein	[S] COG3228 Uncharacterized protein conserved in bacteria	gene	gene843	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_846
CH54_848	CH54_848		CH54_848	913156	913231	+	tRNA-Asn		tRNA	gene844	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_848
CH54_849	CH54_849		CH54_849	914059	914352	-	hypothetical protein		gene	gene846	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_849
CH54_85	CH54_85		CH54_85	90700	91500	+	hydrolase%2C TatD family protein	[L] COG0084 Mg-dependent DNase	gene	gene84	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_85
CH54_850	CH54_850		CH54_850	913374	914087	+	RNA pseudouridylate synthase family protein	[J] COG0564 Pseudouridylate synthases%2C 23S RNA-specific	gene	gene845	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_850
CH54_851	CH54_851		CH54_851	914541	915443	-	aspartyl/Asparaginyl beta-hydroxylase family protein	[O] COG3555 Aspartyl/asparaginyl beta-hydroxylase and related dioxygenases	gene	gene847	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_851
CH54_852	CH54_852		CH54_852	915814	916506	-	outer membrane beta-barrel domain protein	[M] COG3637 Opacity protein and related surface antigens	gene	gene848	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_852
CH54_853	CH54_853		CH54_853	916773	917522	-	4'-phosphopantetheinyl transferase superfamily protein	[Q] COG2977 Phosphopantetheinyl transferase component of siderophore synthetase	gene	gene849	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_853
CH54_854	CH54_854		CH54_854	917893	918870	+	TRAP transporter solute receptor%2C DctP family protein	dctP: TRAP transporter solute receptor%2C DctP family protein~[G] COG1638 TRAP-type C4-dicarboxylate transport system%2C periplasmic component	gene	gene850	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_854
CH54_855	CH54_855		CH54_855	919053	919559	+	tripartite ATP-independent periplasmic transporter%2C DctQ component family protein	[G] COG3090 TRAP-type C4-dicarboxylate transport system%2C small permease component	gene	gene851	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_855
CH54_856	CH54_856		CH54_856	919578	920870	+	TRAP transporter%2C DctM subunit	dctM: TRAP transporter%2C DctM subunit~[G] COG1593 TRAP-type C4-dicarboxylate transport system%2C large permease component	gene	gene852	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_856
CH54_857	CH54_857		CH54_857	920933	922396	-	transporter%2C divalent anion:Na+ symporter family protein	dass: transporter%2C divalent anion:Na+ symporter family protein~[P] COG0471 Di- and tricarboxylate transporters	gene	gene853	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_857
CH54_858	CH54_858	citG	citG	922390	923385	-	triphosphoribosyl-dephospho-CoA synthase CitG	citrate_citG: triphosphoribosyl-dephospho-CoA synthase CitG~[H] COG1767 Triphosphoribosyl-dephospho-CoA synthetase	gene	gene854	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_858
CH54_859	CH54_859	citX	citX	923363	923911	-	holo-ACP synthase CitX	citrate_citX: holo-ACP synthase CitX~[HI] COG3697 Phosphoribosyl-dephospho-CoA transferase (holo-ACP synthetase)	gene	gene855	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_859
CH54_86	CH54_86	ptsG	ptsG	91817	93250	+	PTS system%2C glucose-specific IIBC component	PTS-II-BC-glcB: PTS system%2C glucose-specific IIBC component~[G] COG1263 Phosphotransferase system IIC components%2C glucose/maltose/N-acetylglucosamine-specific	gene	gene85	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_86
CH54_860	CH54_860	citF	citF	923915	925432	-	citrate lyase%2C alpha subunit	citF: citrate lyase%2C alpha subunit~[C] COG3051 Citrate lyase%2C alpha subunit	gene	gene856	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_860
CH54_861	CH54_861		CH54_861	925436	926329	-	hpcH/HpaI aldolase/citrate lyase family protein	[G] COG2301 Citrate lyase beta subunit	gene	gene857	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_861
CH54_862	CH54_862	citD	citD	926329	926622	-	citrate lyase acyl carrier protein	citD: citrate lyase acyl carrier protein~[C] COG3052 Citrate lyase%2C gamma subunit	gene	gene858	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_862
CH54_863	CH54_863	citC	citC	926745	927809	-	[citrate (pro-3S)-lyase] ligase	cit_ly_ligase: [citrate (pro-3S)-lyase] ligase~[C] COG3053 Citrate lyase synthetase	gene	gene859	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_863
CH54_864	CH54_864		CH54_864	928245	929822	+	sensory box protein	[T] COG3290 Signal transduction histidine kinase regulating citrate/malate metabolism	gene	gene860	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_864
CH54_865	CH54_865		CH54_865	929844	930530	+	response regulator	[KT] COG4565 Response regulator of citrate/malate metabolism	gene	gene861	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_865
CH54_866	CH54_866		CH54_866	930721	931350	+	bacterial regulatory s%2C luxR family protein	[TK] COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain	gene	gene862	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_866
CH54_867	CH54_867		CH54_867	931352	932929	+	histidine kinase family protein	[T] COG3851 Signal transduction histidine kinase%2C glucose-6-phosphate specific	gene	gene863	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_867
CH54_868	CH54_868		CH54_868	933018	934349	+	major Facilitator Superfamily protein	[G] COG2271 Sugar phosphate permease	gene	gene864	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_868
CH54_869	CH54_869		CH54_869	934480	935511	+	bacterial extracellular solute-binding family protein	[P] COG1840 ABC-type Fe3+ transport system%2C periplasmic component	gene	gene865	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_869
CH54_87	CH54_87		CH54_87	93350	94267	-	aspartyl protease family protein		gene	gene86	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_87
CH54_870	CH54_870		CH54_870	935630	937708	+	binding--dependent transport system inner membrane component family protein	[P] COG1178 ABC-type Fe3+ transport system%2C permease component	gene	gene866	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_870
CH54_871	CH54_871		CH54_871	937731	938825	+	ABC transporter family protein	[E] COG3842 ABC-type spermidine/putrescine transport systems%2C ATPase components	gene	gene867	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_871
CH54_872	CH54_872		CH54_872	939023	939098	+	tRNA-Asn		tRNA	gene868	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_872
CH54_873	CH54_873		CH54_873	939424	940704	-	cytochrome P450 family protein	[Q] COG2124 Cytochrome P450	gene	gene869	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_873
CH54_874	CH54_874		CH54_874	940720	942456	-	ABC transporter family protein	[V] COG1132 ABC-type multidrug transport system%2C ATPase and permease components	gene	gene870	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_874
CH54_875	CH54_875		CH54_875	942447	944210	-	ABC transporter family protein	[V] COG1132 ABC-type multidrug transport system%2C ATPase and permease components	gene	gene871	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_875
CH54_876	CH54_876	ccmA	ccmA	944188	945663	-	heme ABC exporter%2C ATP-binding protein CcmA	ccmA: heme ABC exporter%2C ATP-binding protein CcmA~[R] COG1123 ATPase components of various ABC-type transport systems%2C contain duplicated ATPase	gene	gene872	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_876
CH54_877	CH54_877		CH54_877	945663	946415	-	binding--dependent transport system inner membrane component family protein	[V] COG4171 ABC-type antimicrobial peptide transport system%2C permease component	gene	gene873	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_877
CH54_878	CH54_878		CH54_878	946412	947359	-	binding--dependent transport system inner membrane component family protein	[EP] COG0601 ABC-type dipeptide/oligopeptide/nickel transport systems%2C permease components	gene	gene874	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_878
CH54_879	CH54_879		CH54_879	947356	948843	-	bacterial extracellular solute-binding s%2C 5 Middle family protein	[E] COG0747 ABC-type dipeptide transport system%2C periplasmic component	gene	gene875	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_879
CH54_88	CH54_88		CH54_88	94248	96389	-	ABC transporter family protein	[V] COG2274 ABC-type bacteriocin/lantibiotic exporters%2C contain an N-terminal double-glycine peptidase domain	gene	gene87	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_88
CH54_880	CH54_880		CH54_880	948902	951100	-	tonB dependent receptor family protein	[P] COG1629 Outer membrane receptor proteins%2C mostly Fe transport	gene	gene876	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_880
CH54_881	CH54_881		CH54_881	951233	952186	-	helix-turn-helix domain protein	[K] COG2207 AraC-type DNA-binding domain-containing proteins	gene	gene877	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_881
CH54_882	CH54_882		CH54_882	952474	953799	-	salicylate synthase	salicyl_syn: salicylate synthase~[EH] COG0147 Anthranilate/para-aminobenzoate synthases component I	gene	gene878	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_882
CH54_883	CH54_883		CH54_883	953815	955419	-	AMP-binding enzyme family protein	[Q] COG1021 Peptide arylation enzymes	gene	gene879	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_883
CH54_884	CH54_884		CH54_884	955412	956116	-	methyltransferase domain protein		gene	gene880	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_884
CH54_885	CH54_885		CH54_885	956120	956884	-	thioesterase domain protein	[Q] COG3208 Predicted thioesterase involved in non-ribosomal peptide biosynthesis	gene	gene881	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_885
CH54_886	CH54_886		CH54_886	956881	957972	-	thiazolinyl imide reductase family protein	thiaz-red: thiazolinyl imide reductase family protein~[Q] COG4693 Oxidoreductase (NAD-binding)%2C involved in siderophore biosynthesis	gene	gene882	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_886
CH54_887	CH54_887		CH54_887	957969	959096	-	saccharopine dehydrogenase family protein	[S] COG3268 Uncharacterized conserved protein	gene	gene883	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_887
CH54_888	CH54_888		CH54_888	959096	964519	-	amino acid adenylation domain protein	AA-adenyl-dom: amino acid adenylation domain protein~[Q] COG1020 Non-ribosomal peptide synthetase modules and related proteins	gene	gene884	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_888
CH54_889	CH54_889	dltA	dltA	964516	974094	-	D-alanine--poly(phosphoribitol) ligase%2C subunit 1	D-ala-DACP-lig: D-alanine--poly(phosphoribitol) ligase%2C subunit 1~[Q] COG1020 Non-ribosomal peptide synthetase modules and related proteins	gene	gene885	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_889
CH54_89	CH54_89		CH54_89	96386	97669	-	hlyD secretion family protein	[M] COG0845 Membrane-fusion protein	gene	gene88	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_89
CH54_890	CH54_890		CH54_890	974193	974486	-	hypothetical protein		gene	gene886	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_890
CH54_891	CH54_891		CH54_891	974502	975215	+	4'-phosphopantetheinyl transferase superfamily protein	[Q] COG2977 Phosphopantetheinyl transferase component of siderophore synthetase	gene	gene887	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_891
CH54_892	CH54_892		CH54_892	975391	976350	-	zinc-binding dehydrogenase family protein	[CR] COG0604 NADPH:quinone reductase and related Zn-dependent oxidoreductases	gene	gene888	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_892
CH54_893	CH54_893		CH54_893	976412	976801	-	endoribonuclease L-PSP family protein	[J] COG0251 Putative translation initiation inhibitor%2C yjgF family	gene	gene889	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_893
CH54_894	CH54_894		CH54_894	976943	977863	+	bacterial regulatory helix-turn-helix%2C lysR family protein	[K] COG0583 Transcriptional regulator	gene	gene890	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_894
CH54_895	CH54_895		CH54_895	978684	979316	+	bacterial regulatory s%2C luxR family protein	[TK] COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain	gene	gene891	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_895
CH54_896	CH54_896		CH54_896	979291	983148	+	hpt domain protein	[T] COG0642 Signal transduction histidine kinase	gene	gene892	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_896
CH54_897	CH54_897		CH54_897	983593	984123	+	fimbrial family protein	[NU] COG3539 P pilus assembly protein%2C pilin FimA	gene	gene893	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_897
CH54_898	CH54_898		CH54_898	984216	984950	+	hypothetical protein	pili and flagellar-assembly chaperone%2C PapD N-terminal domain protein~[NU] COG3121 P pilus assembly protein%2C chaperone PapD	gene	gene894	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_898
CH54_899	CH54_899		CH54_899	984999	987641	+	hypothetical protein	papC N-terminal domain protein~[NU] COG3188 P pilus assembly protein%2C porin PapC	gene	gene895	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_899
CH54_9	CH54_9	fabA	fabA	9084	9602	-	beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA	fabA: beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA~[I] COG0764 3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier protein) dehydratases	gene	gene8	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_9
CH54_90	CH54_90	xyeB	xyeB	97704	98888	-	radical SAM/SPASM domain peptide maturase%2C XyeB family	rSAM_XyeB: radical SAM/SPASM domain peptide maturase%2C XyeB family~[R] COG0641 Arylsulfatase regulator (Fe-S oxidoreductase)	gene	gene89	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_90
CH54_900	CH54_900		CH54_900	987656	988990	+	fimbrial family protein		gene	gene896	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_900
CH54_901	CH54_901		CH54_901	988987	989727	+	hypothetical protein	pili and flagellar-assembly chaperone%2C PapD N-terminal domain protein~[NU] COG3121 P pilus assembly protein%2C chaperone PapD	gene	gene897	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_901
CH54_902	CH54_902		CH54_902	989895	989970	+	tRNA-Asn		tRNA	gene898	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_902
CH54_903	CH54_903		CH54_903	990222	991196	-	response regulator	[NT] COG0835 Chemotaxis signal transduction protein	gene	gene899	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_903
CH54_904	CH54_904		CH54_904	991325	992206	-	bacterial regulatory helix-turn-helix%2C lysR family protein	[K] COG0583 Transcriptional regulator	gene	gene900	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_904
CH54_905	CH54_905		CH54_905	992340	993533	+	beta-lactamase family protein	[V] COG1680 Beta-lactamase class C and other penicillin binding proteins	gene	gene901	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_905
CH54_906	CH54_906		CH54_906	993533	994720	+	major Facilitator Superfamily protein	[G] COG2814 Arabinose efflux permease	gene	gene902	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_906
CH54_907	CH54_907		CH54_907	994853	995614	-	deoR-like helix-turn-helix domain protein	[KG] COG1349 Transcriptional regulators of sugar metabolism	gene	gene903	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_907
CH54_908	CH54_908		CH54_908	995693	996502	-	HAD hydrolase%2C IIB family protein	HAD-SF-IIB: HAD hydrolase%2C IIB family protein~[R] COG0561 Predicted hydrolases of the HAD superfamily	gene	gene904	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_908
CH54_909	CH54_909		CH54_909	996574	997413	-	histidine biosynthesis family protein		gene	gene905	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_909
CH54_91	CH54_91		CH54_91	99038	99127	-	hypothetical protein		gene	gene90	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_91
CH54_910	CH54_910		CH54_910	997456	999060	-	putative membrane protein		gene	gene906	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_910
CH54_911	CH54_911		CH54_911	999444	1000841	-	MATE efflux family protein	matE: MATE efflux family protein~[V] COG0534 Na+-driven multidrug efflux pump	gene	gene907	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_911
CH54_912	CH54_912	argG	argG	1001079	1002443	+	argininosuccinate synthase	argG: argininosuccinate synthase~[E] COG0137 Argininosuccinate synthase	gene	gene908	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_912
CH54_913	CH54_913		CH54_913	1002537	1003793	-	nucleoside transporter family protein	2A0110: nucleoside transporter family protein~[GEPR] COG0477 Permeases of the major facilitator superfamily	gene	gene909	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_913
CH54_914	CH54_914	xapA	xapA	1003944	1004801	-	xanthosine phosphorylase	XAPA: xanthosine phosphorylase~[F] COG0005 Purine nucleoside phosphorylase	gene	gene910	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_914
CH54_915	CH54_915		CH54_915	1005006	1005887	+	eamA-like transporter family protein	[GER] COG0697 Permeases of the drug/metabolite transporter (DMT) superfamily	gene	gene911	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_915
CH54_916	CH54_916		CH54_916	1005906	1006799	-	bacterial regulatory helix-turn-helix%2C lysR family protein	[K] COG0583 Transcriptional regulator	gene	gene912	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_916
CH54_917	CH54_917	cobT	cobT	1006944	1008005	-	nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase	cobT_DBIPRT: nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase~[H] COG2038 NaMN:DMB phosphoribosyltransferase	gene	gene913	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_917
CH54_918	CH54_918	cobC	cobC	1008010	1008702	-	alpha-ribazole phosphatase	ribazole_cobC: alpha-ribazole phosphatase~[G] COG0406 Fructose-2%2C6-bisphosphatase	gene	gene914	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_918
CH54_919	CH54_919	cobS	cobS	1008728	1009474	-	cobalamin 5'-phosphate synthase	cobS: cobalamin 5'-phosphate synthase~[H] COG0368 Cobalamin-5-phosphate synthase	gene	gene915	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_919
CH54_92	CH54_92		CH54_92	99521	101311	-	bacterial extracellular solute-binding s%2C 5 Middle family protein	[R] COG4533 ABC-type uncharacterized transport system%2C periplasmic component	gene	gene91	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_92
CH54_920	CH54_920		CH54_920	1009471	1010016	-	cobinamide kinase / cobinamide phosphate guanyltransferase family protein	[H] COG2087 Adenosyl cobinamide kinase/adenosyl cobinamide phosphate guanylyltransferase	gene	gene916	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_920
CH54_921	CH54_921	cobQ	cobQ	1010013	1011566	-	cobyric acid synthase CobQ	cobQ: cobyric acid synthase CobQ~[H] COG1492 Cobyric acid synthase	gene	gene917	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_921
CH54_922	CH54_922		CH54_922	1011563	1012378	-	cobalt ABC transporter%2C ATP-binding family protein	cbiO: cobalt ABC transporter%2C ATP-binding family protein~[P] COG1122 ABC-type cobalt transport system%2C ATPase component	gene	gene918	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_922
CH54_923	CH54_923	cbiQ	cbiQ	1012390	1013067	-	cobalt ABC transporter%2C permease protein CbiQ	cbiQ_TIGR: cobalt ABC transporter%2C permease protein CbiQ~[P] COG0619 ABC-type cobalt transport system%2C permease component CbiQ and related transporters	gene	gene919	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_923
CH54_924	CH54_924	cbiN	cbiN	1013054	1013335	-	cobalt transport family protein	cbiN: cobalt transport family protein~[P] COG1930 ABC-type cobalt transport system%2C periplasmic component	gene	gene920	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_924
CH54_925	CH54_925	cbiM	cbiM	1013337	1014074	-	cobalamin biosynthesis protein CbiM	cbiM: cobalamin biosynthesis protein CbiM~[P] COG0310 ABC-type Co2+ transport system%2C permease component	gene	gene921	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_925
CH54_926	CH54_926	cobI	cobI	1014128	1014838	-	precorrin-2 C(20)-methyltransferase	cobI_cbiL: precorrin-2 C(20)-methyltransferase~[H] COG2243 Precorrin-2 methylase	gene	gene922	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_926
CH54_927	CH54_927		CH54_927	1014838	1015632	-	cbiX family protein	[H] COG4822 Cobalamin biosynthesis protein CbiK%2C Co2+ chelatase	gene	gene923	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_927
CH54_928	CH54_928	cobK	cobK	1015629	1016456	-	precorrin-6x reductase	precor6x_red: precorrin-6x reductase~[H] COG2099 Precorrin-6x reductase	gene	gene924	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_928
CH54_929	CH54_929	cobJ	cobJ	1016487	1017212	-	precorrin-3B C17-methyltransferase	cobJ_cbiH: precorrin-3B C17-methyltransferase~[H] COG1010 Precorrin-3B methylase	gene	gene925	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_929
CH54_93	CH54_93		CH54_93	101460	102281	+	shikimate dehydrogenase substrate binding domain protein	[E] COG0169 Shikimate 5-dehydrogenase	gene	gene92	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_93
CH54_930	CH54_930		CH54_930	1017212	1018324	-	cobalamin synthesis G family protein	[H] COG2073 Cobalamin biosynthesis protein CbiG	gene	gene926	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_930
CH54_931	CH54_931	cobM	cobM	1018263	1019084	-	precorrin-4 C11-methyltransferase	cobM_cbiF: precorrin-4 C11-methyltransferase~[H] COG2875 Precorrin-4 methylase	gene	gene927	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_931
CH54_932	CH54_932	cbiT	cbiT	1019068	1019661	-	precorrin-6Y C5%2C15-methyltransferase (decarboxylating)%2C CbiT subunit	cbiT: precorrin-6Y C5%2C15-methyltransferase (decarboxylating)%2C CbiT subunit~[H] COG2242 Precorrin-6B methylase 2	gene	gene928	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_932
CH54_933	CH54_933	cbiE	cbiE	1019651	1020253	-	precorrin-6y C5%2C15-methyltransferase (decarboxylating)%2C CbiE subunit	cbiE: precorrin-6y C5%2C15-methyltransferase (decarboxylating)%2C CbiE subunit~[H] COG2241 Precorrin-6B methylase 1	gene	gene929	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_933
CH54_934	CH54_934	cbiD	cbiD	1020250	1021416	-	cobalamin biosynthesis protein CbiD	cbiD: cobalamin biosynthesis protein CbiD~[H] COG1903 Cobalamin biosynthesis protein CbiD	gene	gene930	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_934
CH54_935	CH54_935		CH54_935	1021440	1022075	-	precorrin-8X methylmutase family protein	[H] COG2082 Precorrin isomerase	gene	gene931	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_935
CH54_936	CH54_936	cobD	cobD	1022089	1023045	-	cobalamin biosynthesis protein CobD	cobD: cobalamin biosynthesis protein CobD~[H] COG1270 Cobalamin biosynthesis protein CobD/CbiB	gene	gene932	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_936
CH54_937	CH54_937	cobB	cobB	1023042	1024445	-	cobyrinic acid a%2Cc-diamide synthase	cobB: cobyrinic acid a%2Cc-diamide synthase~[H] COG1797 Cobyrinic acid a%2Cc-diamide synthase	gene	gene933	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_937
CH54_938	CH54_938		CH54_938	1025123	1026025	-	helix-turn-helix domain protein	[TK] COG4936 Predicted sensor domain	gene	gene934	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_938
CH54_939	CH54_939		CH54_939	1026311	1027126	-	MIP channel s family protein	MIP: MIP channel s family protein~[G] COG0580 Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family)	gene	gene935	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_939
CH54_94	CH54_94		CH54_94	102357	102710	+	HIT domain protein	[FGR] COG0537 Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases	gene	gene93	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_94
CH54_940	CH54_940		CH54_940	1027146	1027262	-	putative membrane protein		gene	gene936	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_940
CH54_941	CH54_941		CH54_941	1027995	1028294	+	BMC domain protein	[QC] COG4577 Carbon dioxide concentrating mechanism/carboxysome shell protein	gene	gene937	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_941
CH54_942	CH54_942	pduB	pduB	1028291	1029103	+	microcompartment protein PduB	microcomp_PduB: microcompartment protein PduB~[E] COG4816 Ethanolamine utilization protein	gene	gene938	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_942
CH54_943	CH54_943		CH54_943	1029124	1030788	+	dehydratase large subunit	[Q] COG4909 Propanediol dehydratase%2C large subunit	gene	gene939	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_943
CH54_944	CH54_944		CH54_944	1030801	1031469	+	dehydratase medium subunit	[Q] COG4909 Propanediol dehydratase%2C large subunit	gene	gene940	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_944
CH54_945	CH54_945		CH54_945	1031484	1032008	+	dehydratase small subunit	[Q] COG4910 Propanediol dehydratase%2C small subunit	gene	gene941	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_945
CH54_946	CH54_946		CH54_946	1032099	1033922	+	diol dehydratase reactivase alpha subunit	reactive_PduG: diol dehydratase reactivase alpha subunit	gene	gene942	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_946
CH54_947	CH54_947		CH54_947	1033922	1034263	+	dehydratase medium subunit		gene	gene943	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_947
CH54_948	CH54_948		CH54_948	1034295	1034570	+	BMC domain protein	[QC] COG4577 Carbon dioxide concentrating mechanism/carboxysome shell protein	gene	gene944	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_948
CH54_949	CH54_949		CH54_949	1034592	1035200	+	BMC domain protein	[QC] COG4577 Carbon dioxide concentrating mechanism/carboxysome shell protein	gene	gene945	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_949
CH54_95	CH54_95		CH54_95	102724	103131	+	hypothetical protein	conserved hypothetical protein~[R] COG5633 Predicted periplasmic lipoprotein	gene	gene94	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_95
CH54_950	CH54_950		CH54_950	1035200	1035847	+	propanediol utilization PduL family protein	[Q] COG4869 Propanediol utilization protein	gene	gene946	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_950
CH54_951	CH54_951	pduM	pduM	1035844	1036341	+	microcompartment protein PduM	microcomp_PduM: microcompartment protein PduM	gene	gene947	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_951
CH54_952	CH54_952		CH54_952	1036345	1036620	+	ethanolamine utilization EutN/carboxysome family protein	[QC] COG4576 Carbon dioxide concentrating mechanism/carboxysome shell protein	gene	gene948	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_952
CH54_953	CH54_953		CH54_953	1036636	1037655	+	cob(I)alamin adenosyltransferase	ATP:cob(I)alamin adenosyltransferase~pduO_Nterm: ATP:cob(I)alamin adenosyltransferase~[S] COG2096 Uncharacterized conserved protein	gene	gene949	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_953
CH54_954	CH54_954		CH54_954	1037655	1039043	+	aldehyde dehydrogenase family protein	[C] COG1012 NAD-dependent aldehyde dehydrogenases	gene	gene950	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_954
CH54_955	CH54_955		CH54_955	1039054	1040169	+	iron-containing alcohol dehydrogenase family protein	[C] COG1454 Alcohol dehydrogenase%2C class IV	gene	gene951	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_955
CH54_956	CH54_956		CH54_956	1040162	1041556	+	electron transport complex%2C RnfABCDGE type%2C C subunit	rnfC: electron transport complex%2C RnfABCDGE type%2C C subunit~[C] COG4656 Predicted NADH:ubiquinone oxidoreductase%2C subunit RnfC	gene	gene952	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_956
CH54_957	CH54_957		CH54_957	1041568	1042125	+	BMC domain protein	[QC] COG4577 Carbon dioxide concentrating mechanism/carboxysome shell protein	gene	gene953	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_957
CH54_958	CH54_958		CH54_958	1042125	1042475	+	BMC domain protein	[E] COG4810 Ethanolamine utilization protein	gene	gene954	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_958
CH54_959	CH54_959	eutP	eutP	1042480	1042932	+	ethanolamine utilization protein%2C EutP	eutP: ethanolamine utilization protein%2C EutP~[E] COG4917 Ethanolamine utilization protein	gene	gene955	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_959
CH54_96	CH54_96		CH54_96	103152	103733	+	hypothetical protein	conserved hypothetical protein~[R] COG3417 Collagen-binding surface adhesin SpaP (antigen I/II family)	gene	gene95	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_96
CH54_960	CH54_960	ackA	ackA	1042922	1044142	+	acetate kinase	ackA: acetate kinase~[C] COG0282 Acetate kinase	gene	gene956	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_960
CH54_961	CH54_961	cobA	cobA	1044151	1044933	+	uroporphyrinogen-III C-methyltransferase	cobA_cysG_Cterm: uroporphyrinogen-III C-methyltransferase~[H] COG0007 Uroporphyrinogen-III methylase	gene	gene957	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_961
CH54_962	CH54_962		CH54_962	1044965	1046038	+	threonine-phosphate decarboxylase	L_thr_O3P_dcar: threonine-phosphate decarboxylase~[E] COG0079 Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase	gene	gene958	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_962
CH54_963	CH54_963		CH54_963	1046031	1046891	+	hypothetical protein	GHMP kinase N terminal domain protein~[Q] COG4542 Protein involved in propanediol utilization%2C and related proteins (includes coumermycin biosynthetic protein)%2C possible kinase	gene	gene959	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_963
CH54_964	CH54_964		CH54_964	1047276	1048259	+	periplasmic binding domain protein	[G] COG1879 ABC-type sugar transport system%2C periplasmic component	gene	gene960	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_964
CH54_965	CH54_965		CH54_965	1048340	1049821	+	ABC transporter family protein	[G] COG1129 ABC-type sugar transport system%2C ATPase component	gene	gene961	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_965
CH54_966	CH54_966		CH54_966	1049814	1050836	+	branched-chain amino acid transport system / permease component family protein	[G] COG1172 Ribose/xylose/arabinose/galactoside ABC-type transport systems%2C permease components	gene	gene962	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_966
CH54_967	CH54_967		CH54_967	1050839	1051822	+	branched-chain amino acid transport system / permease component family protein	[G] COG1172 Ribose/xylose/arabinose/galactoside ABC-type transport systems%2C permease components	gene	gene963	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_967
CH54_968	CH54_968		CH54_968	1051910	1052227	-	hypothetical protein	conserved hypothetical protein~[S] COG2926 Uncharacterized protein conserved in bacteria	gene	gene964	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_968
CH54_969	CH54_969		CH54_969	1052385	1053443	-	fusaric acid resistance family protein	[S] COG1289 Predicted membrane protein	gene	gene965	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_969
CH54_97	CH54_97	thiK	thiK	103714	104661	+	thiamine kinase	ycfN_thiK: thiamine kinase~[M] COG0510 Predicted choline kinase involved in LPS biosynthesis	gene	gene96	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_97
CH54_970	CH54_970		CH54_970	1053593	1054702	-	3-beta hydroxysteroid dehydrogenase/isomerase family protein	[MG] COG0451 Nucleoside-diphosphate-sugar epimerases	gene	gene966	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_970
CH54_971	CH54_971		CH54_971	1054940	1056370	+	hypothetical protein	exonuclease C-terminal family protein~[L] COG2925 Exonuclease I	gene	gene967	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_971
CH54_972	CH54_972		CH54_972	1056466	1057854	-	amino acid permease family protein	[E] COG0531 Amino acid transporters	gene	gene968	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_972
CH54_973	CH54_973		CH54_973	1057844	1058059	-	hypothetical protein	conserved hypothetical protein	gene	gene969	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_973
CH54_974	CH54_974		CH54_974	1058308	1059399	-	iron-containing alcohol dehydrogenase family protein	[C] COG0371 Glycerol dehydrogenase and related enzymes	gene	gene970	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_974
CH54_975	CH54_975		CH54_975	1059601	1061115	+	ABC transporter family protein	[G] COG1129 ABC-type sugar transport system%2C ATPase component	gene	gene971	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_975
CH54_976	CH54_976		CH54_976	1061112	1062110	+	branched-chain amino acid transport system / permease component family protein	[G] COG1172 Ribose/xylose/arabinose/galactoside ABC-type transport systems%2C permease components	gene	gene972	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_976
CH54_977	CH54_977		CH54_977	1062234	1063061	-	UDP-glucose/GDP-mannose dehydrogenase family%2C NAD binding domain protein	[MG] COG0451 Nucleoside-diphosphate-sugar epimerases	gene	gene973	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_977
CH54_978	CH54_978	hisG	hisG	1063586	1064485	+	ATP phosphoribosyltransferase	hisG: ATP phosphoribosyltransferase~[E] COG0040 ATP phosphoribosyltransferase	gene	gene974	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_978
CH54_979	CH54_979	hisD	hisD	1064489	1065814	+	histidinol dehydrogenase	hisD: histidinol dehydrogenase~[E] COG0141 Histidinol dehydrogenase	gene	gene975	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_979
CH54_98	CH54_98		CH54_98	104698	105723	+	hypothetical protein	glycosyl hydrolase family 3 N terminal domain protein~[G] COG1472 Beta-glucosidase-related glycosidases	gene	gene97	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_98
CH54_980	CH54_980	hisC	hisC	1065811	1066935	+	histidinol-phosphate transaminase	hisC: histidinol-phosphate transaminase~[E] COG0079 Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase	gene	gene976	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_980
CH54_981	CH54_981	hisB	hisB	1066932	1067999	+	histidinol-phosphatase	hisB_Nterm: histidinol-phosphatase~[E] COG0131 Imidazoleglycerol-phosphate dehydratase	gene	gene977	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_981
CH54_982	CH54_982	hisH	hisH	1067999	1068589	+	imidazole glycerol phosphate synthase%2C glutamine amidotransferase subunit	IMP_synth_hisH: imidazole glycerol phosphate synthase%2C glutamine amidotransferase subunit~[E] COG0118 Glutamine amidotransferase	gene	gene978	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_982
CH54_983	CH54_983	hisA	hisA	1068595	1069332	+	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase	[E] COG0106 Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase	gene	gene979	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_983
CH54_984	CH54_984	hisF	hisF	1069314	1070090	+	imidazoleglycerol phosphate synthase%2C cyclase subunit	hisF: imidazoleglycerol phosphate synthase%2C cyclase subunit~[E] COG0107 Imidazoleglycerol-phosphate synthase	gene	gene980	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_984
CH54_985	CH54_985	hisE	hisE	1070084	1070698	+	phosphoribosyl-ATP diphosphatase	histidine_hisI: phosphoribosyl-ATP diphosphatase~[E] COG0139 Phosphoribosyl-AMP cyclohydrolase	gene	gene981	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_985
CH54_986	CH54_986	gnd	gnd	1070958	1072367	-	6-phosphogluconate dehydrogenase	gnd: 6-phosphogluconate dehydrogenase~[G] COG0362 6-phosphogluconate dehydrogenase	gene	gene982	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_986
CH54_987	CH54_987	galU	galU	1072624	1073517	-	UTP--glucose-1-phosphate uridylyltransferase	galU: UTP--glucose-1-phosphate uridylyltransferase~[M] COG1210 UDP-glucose pyrophosphorylase	gene	gene983	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_987
CH54_988	CH54_988	galU	galU	1073581	1074471	-	UTP--glucose-1-phosphate uridylyltransferase	galU: UTP--glucose-1-phosphate uridylyltransferase~[M] COG1210 UDP-glucose pyrophosphorylase	gene	gene984	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_988
CH54_989	CH54_989		CH54_989	1075653	1077239	+	integral membrane TerC family protein	[R] COG1253 Hemolysins and related proteins containing CBS domains	gene	gene985	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_989
CH54_99	CH54_99		CH54_99	105726	106268	+	hypothetical protein	conserved hypothetical protein~[R] COG3150 Predicted esterase	gene	gene98	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_99
CH54_990	CH54_990		CH54_990	1077366	1078724	-	transporter%2C anaerobic C4-dicarboxylate uptake C family protein	dcuC: transporter%2C anaerobic C4-dicarboxylate uptake C family protein~[C] COG3069 C4-dicarboxylate transporter	gene	gene986	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_990
CH54_991	CH54_991		CH54_991	1079119	1080966	-	asmA family protein	[M] COG2982 Uncharacterized protein involved in outer membrane biogenesis	gene	gene987	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_991
CH54_992	CH54_992	dcd	dcd	1081063	1081644	-	deoxycytidine triphosphate deaminase	dCTP_deam: deoxycytidine triphosphate deaminase~[F] COG0717 Deoxycytidine deaminase	gene	gene988	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_992
CH54_993	CH54_993	udk	udk	1081730	1082371	-	uridine kinase	udk: uridine kinase~[F] COG0572 Uridine kinase	gene	gene989	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_993
CH54_994	CH54_994		CH54_994	1082547	1083659	-	4Fe-4S iron sulfur cluster binding s%2C NifH/frxC family protein	[D] COG0489 ATPases involved in chromosome partitioning	gene	gene990	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_994
CH54_995	CH54_995	metG	metG	1083988	1086018	+	methionine--tRNA ligase	metG: methionine--tRNA ligase~[J] COG0143 Methionyl-tRNA synthetase	gene	gene991	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_995
CH54_996	CH54_996		CH54_996	1086101	1086946	-	putative membrane protein		gene	gene992	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_996
CH54_997	CH54_997		CH54_997	1087404	1088480	+	periplasmic binding domain protein	[G] COG1879 ABC-type sugar transport system%2C periplasmic component	gene	gene993	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_997
CH54_998	CH54_998		CH54_998	1088527	1089780	+	LVIVD repeat family protein	[S] COG5276 Uncharacterized conserved protein	gene	gene994	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_998
CH54_999	CH54_999		CH54_999	1089982	1091199	+	major Facilitator Superfamily protein	[GEPR] COG0477 Permeases of the major facilitator superfamily	gene	gene995	http://www.ncbi.nlm.nih.gov/gene/?term=CH54_999