locus-tag class description HRD68_00015 PF08751 TrwC relaxase HRD68_00015 PF18340 DNA relaxase TraI 2B/2B-like domain HRD68_00015 PF07057 DNA helicase TraI HRD68_00015 PF18272 single-stranded DNA binding TraI N-terminal subdomain HRD68_00025 PF10723 Replication regulatory protein RepB HRD68_00040 PF13610 DDE domain HRD68_00050 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain HRD68_00055 PF13954 PapC N-terminal domain HRD68_00055 PF13953 PapC C-terminal domain HRD68_00055 PF00577 Outer membrane usher protein HRD68_00075 PF03960 ArsC family HRD68_00080 PF02040 Arsenical pump membrane protein HRD68_00085 PF02374 Anion-transporting ATPase HRD68_00090 PF06953 Arsenical resistance operon trans-acting repressor ArsD HRD68_00095 PF01022 Bacterial regulatory protein, arsR family HRD68_00100 PF13610 DDE domain HRD68_00130 PF00816 H-NS histone family HRD68_00135 PF05321 Haemolysin expression modulating protein HRD68_00160 PF00437 Type II/IV secretion system protein HRD68_00165 PF03743 Bacterial conjugation TrbI-like protein HRD68_00170 PF03524 Conjugal transfer protein HRD68_00175 PF04335 VirB8 protein HRD68_00195 PF06769 YoeB-like toxin of bacterial type II toxin-antitoxin system HRD68_00200 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system HRD68_00210 PF03135 CagE, TrbE, VirB family, component of type IV transporter system HRD68_00215 PF04956 TrbC/VIRB2 family HRD68_00220 PF01464 Transglycosylase SLT domain HRD68_00245 PF13614 AAA domain HRD68_00245 PF00376 MerR family regulatory protein HRD68_00255 PF18818 Metallopeptidase superfamily domain HRD68_00255 PF13362 Toprim domain HRD68_00255 PF08401 Domain of unknown function (DUF1738) HRD68_00265 PF01751 Toprim domain HRD68_00265 PF01131 DNA topoisomerase HRD68_00270 PF13091 PLD-like domain HRD68_00275 PF13610 DDE domain HRD68_00285 PF11924 Inverse autotransporter, beta-domain HRD68_00285 PF07979 Intimin C-type lectin domain HRD68_00285 PF09134 Invasin, domain 3 HRD68_00285 PF02369 Bacterial Ig-like domain (group 1) HRD68_00290 PF13610 DDE domain HRD68_00295 PF03797 Autotransporter beta-domain HRD68_00310 PF13610 DDE domain HRD68_00340 PF13610 DDE domain HRD68_00345 PF00589 Phage integrase family HRD68_00365 PF13610 DDE domain HRD68_00370 PF12728 Helix-turn-helix domain HRD68_00380 PF00239 Resolvase, N terminal domain HRD68_00380 PF02796 Helix-turn-helix domain of resolvase HRD68_00395 PF00817 impB/mucB/samB family HRD68_00395 PF13438 Domain of unknown function (DUF4113) HRD68_00395 PF11799 impB/mucB/samB family C-terminal domain HRD68_00395 PF11798 IMS family HHH motif HRD68_00400 PF00717 Peptidase S24-like HRD68_00410 PF02195 ParB-like nuclease domain HRD68_00465 PF01464 Transglycosylase SLT domain HRD68_00480 PF00356 Bacterial regulatory proteins, lacI family HRD68_00490 PF00155 Aminotransferase class I and II HRD68_00505 PF05513 TraA HRD68_00510 PF07178 TraL protein HRD68_00520 PF06586 TraK protein HRD68_00525 PF03743 Bacterial conjugation TrbI-like protein HRD68_00535 PF09676 Type IV conjugative transfer system lipoprotein (TraV) HRD68_00540 PF11130 F pilus assembly Type-IV secretion system for plasmid transfer HRD68_00575 PF12477 Sex factor F TraW protein N terminal HRD68_00580 PF06834 TraU protein HRD68_00585 PF09673 Type-F conjugative transfer system pilin assembly protein HRD68_00590 PF06986 Type-1V conjugative transfer system mating pair stabilisation HRD68_00595 PF13728 F plasmid transfer operon protein HRD68_00605 PF13728 F plasmid transfer operon protein HRD68_00625 PF06122 Conjugative relaxosome accessory transposon protein HRD68_00630 PF07916 TraG-like protein, N-terminal region HRD68_00640 PF01848 Hok/gef family HRD68_00645 PF10412 Type IV secretion-system coupling protein DNA-binding domain HRD68_00645 PF12615 F sex factor protein N terminal HRD68_00650 PF08751 TrwC relaxase HRD68_00650 PF18340 DNA relaxase TraI 2B/2B-like domain HRD68_00650 PF07057 DNA helicase TraI HRD68_00650 PF18272 single-stranded DNA binding TraI N-terminal subdomain HRD68_00660 PF00239 Resolvase, N terminal domain HRD68_00660 PF02796 Helix-turn-helix domain of resolvase HRD68_00685 PF13091 PLD-like domain HRD68_00695 PF18821 Large polyvalent protein-associated domain 7 HRD68_00695 PF03432 Relaxase/Mobilisation nuclease domain HRD68_00715 PF06067 Domain of unknown function (DUF932) HRD68_00750 PF06952 PsiA protein HRD68_00760 PF02195 ParB-like nuclease domain HRD68_00795 PF06406 StbA protein HRD68_00805 PF01381 Helix-turn-helix HRD68_00810 PF05015 RelE-like toxin of type II toxin-antitoxin system HigB HRD68_00820 PF00717 Peptidase S24-like HRD68_00825 PF11799 impB/mucB/samB family C-terminal domain HRD68_00825 PF00817 impB/mucB/samB family HRD68_00825 PF13438 Domain of unknown function (DUF4113) HRD68_00855 PF02796 Helix-turn-helix domain of resolvase HRD68_00855 PF00239 Resolvase, N terminal domain HRD68_00900 PF01051 Initiator Replication protein HRD68_00955 PF00437 Type II/IV secretion system protein HRD68_00970 PF01464 Transglycosylase SLT domain HRD68_00980 PF04917 Bacterial shufflon protein, N-terminal constant region HRD68_01120 PF17482 Phage tail sheath C-terminal domain HRD68_01120 PF04984 Phage tail sheath protein subtilisin-like domain HRD68_01225 PF06530 Phage antitermination protein Q HRD68_01295 PF13356 Arm DNA-binding domain HRD68_01295 PF14659 Phage integrase, N-terminal SAM-like domain HRD68_01295 PF00589 Phage integrase family HRD68_01305 PF04358 DsrC like protein HRD68_01310 PF00708 Acylphosphatase HRD68_01320 PF00717 Peptidase S24-like HRD68_01325 PF10672 S-adenosylmethionine-dependent methyltransferase HRD68_01325 PF17785 PUA-like domain HRD68_01330 PF08755 Hemimethylated DNA-binding protein YccV like HRD68_01335 PF13380 CoA binding domain HRD68_01340 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) HRD68_01345 PF02142 MGS-like domain HRD68_01350 PF00580 UvrD/REP helicase N-terminal domain HRD68_01350 PF12462 DNA helicase IV / RNA helicase N terminal HRD68_01350 PF13361 UvrD-like helicase C-terminal domain HRD68_01355 PF03733 Inner membrane component domain HRD68_01360 PF12805 FUSC-like inner membrane protein yccS HRD68_01365 PF04993 TfoX N-terminal domain HRD68_01365 PF04994 TfoX C-terminal domain HRD68_01370 PF03846 Cell division inhibitor SulA HRD68_01375 PF01389 OmpA-like transmembrane domain HRD68_01375 PF00691 OmpA family HRD68_01380 PF06303 MatP N-terminal domain HRD68_01380 PF17414 MatP C-terminal ribbon-helix-helix domain HRD68_01385 PF05362 Lon protease (S16) C-terminal proteolytic domain HRD68_01385 PF13654 AAA domain HRD68_01390 PF07977 FabA-like domain HRD68_01400 PF02801 Beta-ketoacyl synthase, C-terminal domain HRD68_01400 PF00109 Beta-ketoacyl synthase, N-terminal domain HRD68_01405 PF04957 Ribosome modulation factor HRD68_01410 PF03886 ABC-type transport auxiliary lipoprotein component HRD68_01415 PF02470 MlaD protein HRD68_01420 PF04403 Paraquat-inducible protein A HRD68_01425 PF00005 ABC transporter HRD68_01425 PF12848 ABC transporter HRD68_01425 PF16326 ABC transporter C-terminal domain HRD68_01430 PF10672 S-adenosylmethionine-dependent methyltransferase HRD68_01430 PF01170 Putative RNA methylase family UPF0020 HRD68_01430 PF02926 THUMP domain HRD68_01435 PF03473 MOSC domain HRD68_01435 PF00111 2Fe-2S iron-sulfur cluster binding domain HRD68_01435 PF03476 MOSC N-terminal beta barrel domain HRD68_01440 PF07126 Cell-division protein ZapC HRD68_01445 PF01180 Dihydroorotate dehydrogenase HRD68_01450 PF17432 Domain of unknown function (DUF3458_C) ARM repeats HRD68_01450 PF11940 Domain of unknown function (DUF3458) Ig-like fold HRD68_01450 PF01433 Peptidase family M1 domain HRD68_01455 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain HRD68_01455 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family HRD68_01460 PF00152 tRNA synthetases class II (D, K and N) HRD68_01460 PF01336 OB-fold nucleic acid binding domain HRD68_01465 PF00267 Gram-negative porin HRD68_01470 PF00155 Aminotransferase class I and II HRD68_01475 PF00563 EAL domain HRD68_01475 PF12792 CSS motif domain associated with EAL HRD68_01480 PF00753 Metallo-beta-lactamase superfamily HRD68_01485 PF05951 Bacterial protein of unknown function (DUF882) HRD68_01490 PF03734 L,D-transpeptidase catalytic domain HRD68_01490 PF01471 Putative peptidoglycan binding domain HRD68_01495 PF16330 MukB hinge domain HRD68_01495 PF04310 MukB N-terminal HRD68_01500 PF04288 MukE-like family HRD68_01505 PF03882 MukF winged-helix domain HRD68_01505 PF17193 MukF C-terminal domain HRD68_01505 PF17192 MukF middle domain HRD68_01510 PF13847 Methyltransferase domain HRD68_01515 PF02698 DUF218 domain HRD68_01520 PF01636 Phosphotransferase enzyme family HRD68_01525 PF02348 Cytidylyltransferase HRD68_01530 PF03966 Trm112p-like protein HRD68_01535 PF00313 'Cold-shock' DNA-binding domain HRD68_01540 PF07063 Domain of unknown function (DUF1338) HRD68_01545 PF02606 Tetraacyldisaccharide-1-P 4'-kinase HRD68_01550 PF00664 ABC transporter transmembrane region HRD68_01550 PF00005 ABC transporter HRD68_01560 PF00216 Bacterial DNA-binding protein HRD68_01565 PF00575 S1 RNA binding domain HRD68_01570 PF02224 Cytidylate kinase HRD68_01575 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) HRD68_01580 PF00266 Aminotransferase class-V HRD68_01585 PF04239 Protein of unknown function (DUF421) HRD68_01590 PF00710 Asparaginase, N-terminal HRD68_01590 PF17763 Glutaminase/Asparaginase C-terminal domain HRD68_01595 PF18381 YcaO cyclodehydratase C-terminal domain HRD68_01595 PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding HRD68_01600 PF01226 Formate/nitrite transporter HRD68_01605 PF01228 Glycine radical HRD68_01605 PF02901 Pyruvate formate lyase-like HRD68_01610 PF04055 Radical SAM superfamily HRD68_01615 PF07690 Major Facilitator Superfamily HRD68_01620 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) HRD68_01620 PF02403 Seryl-tRNA synthetase N-terminal domain HRD68_01625 PF00004 ATPase family associated with various cellular activities (AAA) HRD68_01625 PF16193 AAA C-terminal domain HRD68_01625 PF12002 MgsA AAA+ ATPase C terminal HRD68_01630 PF03548 Outer membrane lipoprotein carrier protein LolA HRD68_01635 PF09397 Ftsk gamma domain HRD68_01635 PF13491 4TM region of DNA translocase FtsK/SpoIIIE HRD68_01635 PF01580 FtsK/SpoIIIE family HRD68_01635 PF17854 FtsK alpha domain HRD68_01640 PF01037 Lrp/AsnC ligand binding domain HRD68_01645 PF07992 Pyridine nucleotide-disulphide oxidoreductase HRD68_01650 PF00005 ABC transporter HRD68_01650 PF00664 ABC transporter transmembrane region HRD68_01655 PF00005 ABC transporter HRD68_01655 PF00664 ABC transporter transmembrane region HRD68_01660 PF03588 Leucyl/phenylalanyl-tRNA protein transferase HRD68_01665 PF01176 Translation initiation factor 1A / IF-1 HRD68_01670 PF00004 ATPase family associated with various cellular activities (AAA) HRD68_01670 PF07724 AAA domain (Cdc48 subfamily) HRD68_01670 PF02861 Clp amino terminal domain, pathogenicity island component HRD68_01670 PF17871 AAA lid domain HRD68_01670 PF10431 C-terminal, D2-small domain, of ClpB protein HRD68_01675 PF02617 ATP-dependent Clp protease adaptor protein ClpS HRD68_01680 PF00313 'Cold-shock' DNA-binding domain HRD68_01685 PF02687 FtsX-like permease family HRD68_01685 PF12704 MacB-like periplasmic core domain HRD68_01685 PF00005 ABC transporter HRD68_01690 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion HRD68_01695 PF04393 Protein of unknown function (DUF535) HRD68_01700 PF11398 Protein of unknown function (DUF2813) HRD68_01705 PF03956 Lysine exporter LysO HRD68_01710 PF03063 Prismane/CO dehydrogenase family HRD68_01715 PF00175 Oxidoreductase NAD-binding domain HRD68_01715 PF00970 Oxidoreductase FAD-binding domain HRD68_01715 PF00111 2Fe-2S iron-sulfur cluster binding domain HRD68_01720 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain HRD68_01720 PF00205 Thiamine pyrophosphate enzyme, central domain HRD68_01720 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain HRD68_01730 PF01212 Beta-eliminating lyase HRD68_01735 PF11066 Protein of unknown function (DUF2867) HRD68_01735 PF13460 NAD(P)H-binding HRD68_01740 PF01370 NAD dependent epimerase/dehydratase family HRD68_01745 PF12883 Protein of unknown function (DUF3828) HRD68_01750 PF01817 Chorismate mutase type II HRD68_01755 PF00005 ABC transporter HRD68_01760 PF00497 Bacterial extracellular solute-binding proteins, family 3 HRD68_01765 PF00528 Binding-protein-dependent transport system inner membrane component HRD68_01770 PF00528 Binding-protein-dependent transport system inner membrane component HRD68_01775 PF00497 Bacterial extracellular solute-binding proteins, family 3 HRD68_01780 PF05958 tRNA (Uracil-5-)-methyltransferase HRD68_01790 PF00528 Binding-protein-dependent transport system inner membrane component HRD68_01795 PF00528 Binding-protein-dependent transport system inner membrane component HRD68_01800 PF08402 TOBE domain HRD68_01800 PF00005 ABC transporter HRD68_01805 PF13416 Bacterial extracellular solute-binding protein HRD68_01810 PF10722 Putative bacterial sensory transduction regulator HRD68_01815 PF07214 Protein of unknown function (DUF1418) HRD68_01820 PF00462 Glutaredoxin HRD68_01825 PF06826 Predicted Permease Membrane Region HRD68_01825 PF02080 TrkA-C domain HRD68_01840 PF04754 Putative transposase, YhgA-like HRD68_01850 PF01569 PAP2 superfamily HRD68_01855 PF01791 DeoC/LacD family aldolase HRD68_01860 PF00455 DeoR C terminal sensor domain HRD68_01860 PF08220 DeoR-like helix-turn-helix domain HRD68_01870 PF03315 Serine dehydratase beta chain HRD68_01870 PF03313 Serine dehydratase alpha chain HRD68_01875 PF07943 Penicillin-binding protein 5, C-terminal domain HRD68_01875 PF00768 D-alanyl-D-alanine carboxypeptidase HRD68_01880 PF00571 CBS domain HRD68_01880 PF00291 Pyridoxal-phosphate dependent enzyme HRD68_01885 PF01053 Cys/Met metabolism PLP-dependent enzyme HRD68_01900 PF00528 Binding-protein-dependent transport system inner membrane component HRD68_01905 PF00005 ABC transporter HRD68_01905 PF09383 NIL domain HRD68_01910 PF03180 NLPA lipoprotein HRD68_01925 PF00043 Glutathione S-transferase, C-terminal domain HRD68_01925 PF13417 Glutathione S-transferase, N-terminal domain HRD68_01930 PF00593 TonB dependent receptor HRD68_01930 PF07715 TonB-dependent Receptor Plug Domain HRD68_01935 PF00324 Amino acid permease HRD68_01940 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HRD68_01940 PF03466 LysR substrate binding domain HRD68_01950 PF03601 Conserved hypothetical protein 698 HRD68_01955 PF01261 Xylose isomerase-like TIM barrel HRD68_01960 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit HRD68_01960 PF02378 Phosphotransferase system, EIIC HRD68_01965 PF00294 pfkB family carbohydrate kinase HRD68_01970 PF00381 PTS HPr component phosphorylation site HRD68_01970 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 HRD68_01975 PF00293 NUDIX domain HRD68_01975 PF13344 Haloacid dehalogenase-like hydrolase HRD68_01980 PF03692 Putative zinc- or iron-chelating domain HRD68_01985 PF03222 Tryptophan/tyrosine permease family HRD68_01990 PF01132 Elongation factor P (EF-P) OB domain HRD68_01990 PF09285 Elongation factor P, C-terminal HRD68_01990 PF08207 Elongation factor P (EF-P) KOW-like domain HRD68_01995 PF03786 D-mannonate dehydratase (UxuA) HRD68_02000 PF01232 Mannitol dehydrogenase Rossmann domain HRD68_02000 PF08125 Mannitol dehydrogenase C-terminal domain HRD68_02005 PF00392 Bacterial regulatory proteins, gntR family HRD68_02005 PF07729 FCD domain HRD68_02015 PF02492 CobW/HypB/UreG, nucleotide-binding domain HRD68_02015 PF07683 Cobalamin synthesis protein cobW C-terminal domain HRD68_02020 PF01569 PAP2 superfamily HRD68_02025 PF00877 NlpC/P60 family HRD68_02030 PF00563 EAL domain HRD68_02030 PF12792 CSS motif domain associated with EAL HRD68_02035 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle HRD68_02040 PF00528 Binding-protein-dependent transport system inner membrane component HRD68_02045 PF12911 N-terminal TM domain of oligopeptide transport permease C HRD68_02045 PF00528 Binding-protein-dependent transport system inner membrane component HRD68_02050 PF00005 ABC transporter HRD68_02050 PF08352 Oligopeptide/dipeptide transporter, C-terminal region HRD68_02055 PF13989 YejG-like protein HRD68_02060 PF07690 Major Facilitator Superfamily HRD68_02065 PF01479 S4 domain HRD68_02065 PF00849 RNA pseudouridylate synthase HRD68_02070 PF00271 Helicase conserved C-terminal domain HRD68_02070 PF04851 Type III restriction enzyme, res subunit HRD68_02075 PF01386 Ribosomal L25p family HRD68_02080 PF04245 37-kD nucleoid-associated bacterial protein HRD68_02085 PF07208 Protein of unknown function (DUF1414) HRD68_02090 PF11893 Domain of unknown function (DUF3413) HRD68_02090 PF00884 Sulfatase HRD68_02100 PF06183 DinI-like family HRD68_02110 PF07859 alpha/beta hydrolase fold HRD68_02110 PF13472 GDSL-like Lipase/Acylhydrolase family HRD68_02115 PF09160 FimH, mannose binding HRD68_02115 PF00419 Fimbrial protein HRD68_02125 PF00419 Fimbrial protein HRD68_02135 PF02753 Pili assembly chaperone PapD, C-terminal domain HRD68_02135 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain HRD68_02140 PF00419 Fimbrial protein HRD68_02145 PF00232 Glycosyl hydrolase family 1 HRD68_02150 PF02378 Phosphotransferase system, EIIC HRD68_02150 PF00367 phosphotransferase system, EIIB HRD68_02150 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 HRD68_02155 PF01418 Helix-turn-helix domain, rpiR family HRD68_02155 PF01380 SIS domain HRD68_02160 PF02753 Pili assembly chaperone PapD, C-terminal domain HRD68_02160 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain HRD68_02170 PF13954 PapC N-terminal domain HRD68_02170 PF13953 PapC C-terminal domain HRD68_02170 PF00577 Outer membrane usher protein HRD68_02175 PF02753 Pili assembly chaperone PapD, C-terminal domain HRD68_02175 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain HRD68_02185 PF06183 DinI-like family HRD68_02190 PF01278 Omptin family HRD68_02195 PF00672 HAMP domain HRD68_02195 PF02743 Cache domain HRD68_02195 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HRD68_02200 PF12706 Beta-lactamase superfamily domain HRD68_02210 PF00144 Beta-lactamase HRD68_02225 PF00267 Gram-negative porin HRD68_02230 PF00529 HlyD membrane-fusion protein of T1SS HRD68_02235 PF00664 ABC transporter transmembrane region HRD68_02235 PF00005 ABC transporter HRD68_02250 PF07690 Major Facilitator Superfamily HRD68_02255 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HRD68_02255 PF01627 Hpt domain HRD68_02255 PF16359 RcsD-ABL domain HRD68_02260 PF00072 Response regulator receiver domain HRD68_02260 PF00196 Bacterial regulatory proteins, luxR family HRD68_02265 PF00512 His Kinase A (phospho-acceptor) domain HRD68_02265 PF00072 Response regulator receiver domain HRD68_02265 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HRD68_02265 PF09456 RcsC Alpha-Beta-Loop (ABL) HRD68_02270 PF03989 DNA gyrase C-terminal domain, beta-propeller HRD68_02270 PF00521 DNA gyrase/topoisomerase IV, subunit A HRD68_02280 PF02867 Ribonucleotide reductase, barrel domain HRD68_02280 PF03477 ATP cone domain HRD68_02280 PF00317 Ribonucleotide reductase, all-alpha domain HRD68_02285 PF00268 Ribonucleotide reductase, small chain HRD68_02290 PF00111 2Fe-2S iron-sulfur cluster binding domain HRD68_02295 PF03974 Ecotin HRD68_02300 PF00994 Probable molybdopterin binding domain HRD68_02305 PF03222 Tryptophan/tyrosine permease family HRD68_02310 PF07437 YfaZ precursor HRD68_02315 PF06628 Catalase-related immune-responsive HRD68_02315 PF00199 Catalase HRD68_02320 PF00501 AMP-binding enzyme HRD68_02320 PF13193 AMP-binding enzyme C-terminal domain HRD68_02325 PF13378 Enolase C-terminal domain-like HRD68_02330 PF00378 Enoyl-CoA hydratase/isomerase HRD68_02335 PF12697 Alpha/beta hydrolase family HRD68_02340 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain HRD68_02340 PF16582 Middle domain of thiamine pyrophosphate HRD68_02340 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain HRD68_02345 PF00425 chorismate binding enzyme HRD68_02355 PF05957 Bacterial protein of unknown function (DUF883) HRD68_02360 PF00920 Dehydratase family HRD68_02365 PF03928 Haem-degrading HRD68_02370 PF07690 Major Facilitator Superfamily HRD68_02375 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain HRD68_02375 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain HRD68_02380 PF00356 Bacterial regulatory proteins, lacI family HRD68_02385 PF00106 short chain dehydrogenase HRD68_02390 PF01202 Shikimate kinase HRD68_02395 PF04074 YhcH/YjgK/YiaL HRD68_02400 PF06496 Protein of unknown function (DUF1097) HRD68_02415 PF00361 Proton-conducting membrane transporter HRD68_02420 PF00361 Proton-conducting membrane transporter HRD68_02425 PF00361 Proton-conducting membrane transporter HRD68_02425 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus HRD68_02430 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L HRD68_02435 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 HRD68_02440 PF12838 4Fe-4S dicluster domain HRD68_02445 PF00146 NADH dehydrogenase HRD68_02450 PF00384 Molybdopterin oxidoreductase HRD68_02450 PF04879 Molybdopterin oxidoreductase Fe4S4 domain HRD68_02450 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region HRD68_02450 PF01568 Molydopterin dinucleotide binding domain HRD68_02455 PF10531 SLBB domain HRD68_02455 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit HRD68_02455 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region HRD68_02465 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit HRD68_02465 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit HRD68_02470 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit HRD68_02475 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 HRD68_02480 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HRD68_02480 PF03466 LysR substrate binding domain HRD68_02485 PF00155 Aminotransferase class I and II HRD68_02495 PF03600 Citrate transporter HRD68_02495 PF02080 TrkA-C domain HRD68_02505 PF13419 Haloacid dehalogenase-like hydrolase HRD68_02510 PF03887 YfbU domain HRD68_02515 PF04217 Protein of unknown function, DUF412 HRD68_02520 PF00871 Acetokinase family HRD68_02525 PF07085 DRTGG domain HRD68_02525 PF01515 Phosphate acetyl/butaryl transferase HRD68_02530 PF00356 Bacterial regulatory proteins, lacI family HRD68_02530 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family HRD68_02535 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 HRD68_02545 PF03611 PTS system sugar-specific permease component HRD68_02550 PF03459 TOBE domain HRD68_02550 PF00005 ABC transporter HRD68_02555 PF00528 Binding-protein-dependent transport system inner membrane component HRD68_02560 PF06183 DinI-like family HRD68_02565 PF06183 DinI-like family HRD68_02595 PF10076 Uncharacterised protein conserved in bacteria (DUF2313) HRD68_02600 PF04865 Baseplate J-like protein HRD68_02645 PF04984 Phage tail sheath protein subtilisin-like domain HRD68_02645 PF17482 Phage tail sheath C-terminal domain HRD68_02695 PF03354 Phage Terminase HRD68_02740 PF03796 DnaB-like helicase C terminal domain HRD68_02740 PF00772 DnaB-like helicase N terminal domain HRD68_02745 PF01695 IstB-like ATP binding protein HRD68_02880 PF00589 Phage integrase family HRD68_02880 PF13356 Arm DNA-binding domain HRD68_02890 PF10766 Multidrug efflux pump-associated protein AcrZ HRD68_02895 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HRD68_02895 PF03459 TOBE domain HRD68_02900 PF00005 ABC transporter HRD68_02910 PF16363 GDP-mannose 4,6 dehydratase HRD68_02915 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain HRD68_02915 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain HRD68_02920 PF10509 Galactokinase galactose-binding signature HRD68_02920 PF08544 GHMP kinases C terminal HRD68_02920 PF00288 GHMP kinases N terminal domain HRD68_02925 PF01263 Aldose 1-epimerase HRD68_02935 PF00300 Histidine phosphatase superfamily (branch 1) HRD68_02940 PF00793 DAHP synthetase I family HRD68_02945 PF01545 Cation efflux family HRD68_02950 PF04973 Nicotinamide mononucleotide transporter HRD68_02955 PF02445 Quinolinate synthetase A protein HRD68_02985 PF16331 TolA binding protein trimerisation HRD68_02985 PF13174 Tetratricopeptide repeat HRD68_02990 PF00691 OmpA family HRD68_02995 PF04052 TolB amino-terminal domain HRD68_02995 PF07676 WD40-like Beta Propeller Repeat HRD68_03000 PF06519 TolA C-terminal HRD68_03000 PF06519 TolA C-terminal HRD68_03005 PF02472 Biopolymer transport protein ExbD/TolR HRD68_03010 PF01618 MotA/TolQ/ExbB proton channel family HRD68_03015 PF03061 Thioesterase superfamily HRD68_03020 PF09600 Cyd operon protein YbgE (Cyd_oper_YbgE) HRD68_03025 PF08173 Membrane bound YbgT-like protein HRD68_03030 PF02322 Cytochrome bd terminal oxidase subunit II HRD68_03035 PF01654 Cytochrome bd terminal oxidase subunit I HRD68_03040 PF02872 5'-nucleotidase, C-terminal domain HRD68_03040 PF00149 Calcineurin-like phosphoesterase HRD68_03045 PF02629 CoA binding domain HRD68_03045 PF00549 CoA-ligase HRD68_03050 PF08442 ATP-grasp domain HRD68_03050 PF00549 CoA-ligase HRD68_03055 PF00364 Biotin-requiring enzyme HRD68_03055 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) HRD68_03055 PF02817 e3 binding domain HRD68_03060 PF02779 Transketolase, pyrimidine binding domain HRD68_03060 PF16870 2-oxoglutarate dehydrogenase C-terminal HRD68_03060 PF16078 2-oxoglutarate dehydrogenase N-terminus HRD68_03060 PF00676 Dehydrogenase E1 component HRD68_03065 PF13085 2Fe-2S iron-sulfur cluster binding domain HRD68_03070 PF02910 Fumarate reductase flavoprotein C-term HRD68_03070 PF00890 FAD binding domain HRD68_03075 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit HRD68_03080 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit HRD68_03085 PF00285 Citrate synthase, C-terminal domain HRD68_03090 PF01470 Pyroglutamyl peptidase HRD68_03105 PF03746 LamB/YcsF family HRD68_03110 PF02626 Carboxyltransferase domain, subdomain A and B HRD68_03115 PF02682 Carboxyltransferase domain, subdomain C and D HRD68_03120 PF01784 NIF3 (NGG1p interacting factor 3) HRD68_03125 PF02112 cAMP phosphodiesterases class-II HRD68_03130 PF00875 DNA photolyase HRD68_03130 PF03441 FAD binding domain of DNA photolyase HRD68_03135 PF08349 Protein of unknown function (DUF1722) HRD68_03140 PF10725 Protein of unknown function (DUF2517) HRD68_03145 PF09604 F subunit of K+-transporting ATPase (Potass_KdpF) HRD68_03150 PF03814 Potassium-transporting ATPase A subunit HRD68_03160 PF02669 K+-transporting ATPase, c chain HRD68_03165 PF00512 His Kinase A (phospho-acceptor) domain HRD68_03165 PF13492 GAF domain HRD68_03165 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HRD68_03165 PF02702 Osmosensitive K+ channel His kinase sensor domain HRD68_03165 PF13493 Domain of unknown function (DUF4118) HRD68_03170 PF00486 Transcriptional regulatory protein, C terminal HRD68_03170 PF00072 Response regulator receiver domain HRD68_03180 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain HRD68_03180 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II HRD68_03180 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I HRD68_03180 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III HRD68_03185 PF03925 SeqA protein C-terminal domain HRD68_03185 PF17206 SeqA protein N-terminal domain HRD68_03190 PF12697 Alpha/beta hydrolase family HRD68_03195 PF01402 Ribbon-helix-helix protein, copG family HRD68_03200 PF02203 Tar ligand binding domain homologue HRD68_03200 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HRD68_03200 PF00672 HAMP domain HRD68_03205 PF00258 Flavodoxin HRD68_03210 PF01475 Ferric uptake regulator family HRD68_03220 PF03173 Putative carbohydrate binding domain HRD68_03220 PF03174 Chitobiase/beta-hexosaminidase C-terminal domain HRD68_03220 PF00728 Glycosyl hydrolase family 20, catalytic domain HRD68_03220 PF02838 Glycosyl hydrolase family 20, domain 2 HRD68_03225 PF13982 YbfN-like lipoprotein HRD68_03230 PF03573 outer membrane porin, OprD family HRD68_03235 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain HRD68_03235 PF00749 tRNA synthetases class I (E and Q), catalytic domain HRD68_03240 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 HRD68_03240 PF00367 phosphotransferase system, EIIB HRD68_03240 PF02378 Phosphotransferase system, EIIC HRD68_03245 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase HRD68_03250 PF01979 Amidohydrolase family HRD68_03255 PF00480 ROK family HRD68_03255 PF01047 MarR family HRD68_03260 PF13344 Haloacid dehalogenase-like hydrolase HRD68_03265 PF00733 Asparagine synthase HRD68_03265 PF13537 Glutamine amidotransferase domain HRD68_03300 PF01494 FAD binding domain HRD68_03305 PF01938 TRAM domain HRD68_03305 PF00919 Uncharacterized protein family UPF0004 HRD68_03305 PF04055 Radical SAM superfamily HRD68_03310 PF02562 PhoH-like protein HRD68_03315 PF02130 Uncharacterized protein family UPF0054 HRD68_03320 PF03471 Transporter associated domain HRD68_03320 PF00571 CBS domain HRD68_03325 PF00795 Carbon-nitrogen hydrolase HRD68_03335 PF00497 Bacterial extracellular solute-binding proteins, family 3 HRD68_03340 PF00528 Binding-protein-dependent transport system inner membrane component HRD68_03345 PF00528 Binding-protein-dependent transport system inner membrane component HRD68_03350 PF00005 ABC transporter HRD68_03355 PF07295 Zinc-ribbon containing domain HRD68_03360 PF08264 Anticodon-binding domain of tRNA HRD68_03360 PF00133 tRNA synthetases class I (I, L, M and V) HRD68_03360 PF13603 Leucyl-tRNA synthetase, Domain 2 HRD68_03365 PF04390 Lipopolysaccharide-assembly HRD68_03370 PF14840 Processivity clamp loader gamma complex DNA pol III C-term HRD68_03370 PF06144 DNA polymerase III, delta subunit HRD68_03375 PF01467 Cytidylyltransferase-like HRD68_03385 PF02590 Predicted SPOUT methyltransferase HRD68_03390 PF03717 Penicillin-binding Protein dimerisation domain HRD68_03390 PF00905 Penicillin binding protein transpeptidase domain HRD68_03395 PF01098 Cell cycle protein HRD68_03400 PF05036 Sporulation related domain HRD68_03400 PF03330 Lytic transglycolase HRD68_03405 PF00768 D-alanyl-D-alanine carboxypeptidase HRD68_03405 PF07943 Penicillin-binding protein 5, C-terminal domain HRD68_03410 PF04359 Protein of unknown function (DUF493) HRD68_03415 PF03099 Biotin/lipoate A/B protein ligase family HRD68_03420 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family HRD68_03420 PF04055 Radical SAM superfamily HRD68_03425 PF02416 mttA/Hcf106 family HRD68_03430 PF05230 MASE2 domain HRD68_03430 PF00990 Diguanylate cyclase, GGDEF domain HRD68_03435 PF02537 CrcB-like protein, Camphor Resistance (CrcB) HRD68_03440 PF00313 'Cold-shock' DNA-binding domain HRD68_03445 PF00313 'Cold-shock' DNA-binding domain HRD68_03450 PF00196 Bacterial regulatory proteins, luxR family HRD68_03460 PF00149 Calcineurin-like phosphoesterase HRD68_03475 PF00664 ABC transporter transmembrane region HRD68_03475 PF00005 ABC transporter HRD68_03485 PF08007 Cupin superfamily protein HRD68_03490 PF07702 UTRA domain HRD68_03490 PF00392 Bacterial regulatory proteins, gntR family HRD68_03495 PF10397 Adenylosuccinate lyase C-terminus HRD68_03495 PF00206 Lyase HRD68_03500 PF00939 Sodium:sulfate symporter transmembrane region HRD68_03510 PF04391 Protein of unknown function (DUF533) HRD68_03520 PF01306 LacY proton/sugar symporter HRD68_03525 PF00294 pfkB family carbohydrate kinase HRD68_03530 PF08244 Glycosyl hydrolases family 32 C terminal HRD68_03530 PF00251 Glycosyl hydrolases family 32 N-terminal domain HRD68_03535 PF00356 Bacterial regulatory proteins, lacI family HRD68_03535 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family HRD68_03550 PF00294 pfkB family carbohydrate kinase HRD68_03555 PF04227 Indigoidine synthase A like protein HRD68_03560 PF07662 Na+ dependent nucleoside transporter C-terminus HRD68_03560 PF01773 Na+ dependent nucleoside transporter N-terminus HRD68_03585 PF03544 Gram-negative bacterial TonB protein C-terminal HRD68_03605 PF06519 TolA C-terminal HRD68_03625 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain HRD68_03625 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain HRD68_03650 PF00419 Fimbrial protein HRD68_03660 PF02753 Pili assembly chaperone PapD, C-terminal domain HRD68_03660 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain HRD68_03665 PF00577 Outer membrane usher protein HRD68_03665 PF13954 PapC N-terminal domain HRD68_03665 PF13953 PapC C-terminal domain HRD68_03670 PF00419 Fimbrial protein HRD68_03685 PF09190 DALR domain HRD68_03685 PF01406 tRNA synthetases class I (C) catalytic domain HRD68_03690 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD HRD68_03695 PF00149 Calcineurin-like phosphoesterase HRD68_03700 PF00731 AIR carboxylase HRD68_03705 PF02222 ATP-grasp domain HRD68_03705 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain HRD68_03715 PF00005 ABC transporter HRD68_03720 PF13472 GDSL-like Lipase/Acylhydrolase family HRD68_03725 PF00106 short chain dehydrogenase HRD68_03730 PF00085 Thioredoxin HRD68_03735 PF01145 SPFH domain / Band 7 family HRD68_03735 PF16200 C-terminal region of band_7 HRD68_03740 PF01957 NfeD-like C-terminal, partner-binding HRD68_03750 PF00403 Heavy-metal-associated domain HRD68_03755 PF01963 TraB family HRD68_03760 PF04073 Aminoacyl-tRNA editing domain HRD68_03765 PF00149 Calcineurin-like phosphoesterase HRD68_03765 PF02872 5'-nucleotidase, C-terminal domain HRD68_03770 PF07690 Major Facilitator Superfamily HRD68_03775 PF02254 TrkA-N domain HRD68_03775 PF00999 Sodium/hydrogen exchanger family HRD68_03780 PF00294 pfkB family carbohydrate kinase HRD68_03785 PF02706 Chain length determinant protein HRD68_03790 PF16363 GDP-mannose 4,6 dehydratase HRD68_03795 PF00534 Glycosyl transferases group 1 HRD68_03795 PF13439 Glycosyltransferase Family 4 HRD68_03800 PF01370 NAD dependent epimerase/dehydratase family HRD68_03825 PF00762 Ferrochelatase HRD68_03830 PF05191 Adenylate kinase, active site lid HRD68_03835 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HRD68_03835 PF00183 Hsp90 protein HRD68_03840 PF02132 RecR protein HRD68_03840 PF13662 Toprim domain HRD68_03845 PF02575 YbaB/EbfC DNA-binding family HRD68_03850 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding HRD68_03850 PF12169 DNA polymerase III subunits gamma and tau domain III HRD68_03850 PF12170 DNA polymerase III tau subunit V interacting with alpha HRD68_03855 PF00156 Phosphoribosyl transferase domain HRD68_03860 PF04304 Protein of unknown function (DUF454) HRD68_03870 PF10689 Protein of unknown function (DUF2496) HRD68_03875 PF12794 Mechanosensitive ion channel inner membrane domain 1 HRD68_03875 PF12795 Mechanosensitive ion channel porin domain HRD68_03875 PF00924 Mechanosensitive ion channel HRD68_03880 PF02635 DsrE/DsrF-like family HRD68_03885 PF00440 Bacterial regulatory proteins, tetR family HRD68_03885 PF08361 MAATS-type transcriptional repressor, C-terminal region HRD68_03890 PF00529 HlyD membrane-fusion protein of T1SS HRD68_03890 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion HRD68_03895 PF00873 AcrB/AcrD/AcrF family HRD68_03905 PF01168 Alanine racemase, N-terminal domain HRD68_03910 PF01676 Metalloenzyme superfamily HRD68_03915 PF01197 Ribosomal protein L31 HRD68_03920 PF00444 Ribosomal protein L36 HRD68_03925 PF01297 Zinc-uptake complex component A periplasmic HRD68_03930 PF00950 ABC 3 transport family HRD68_03935 PF00005 ABC transporter HRD68_03945 PF10757 Biofilm formation regulator YbaJ HRD68_03950 PF05321 Haemolysin expression modulating protein HRD68_03955 PF03797 Autotransporter beta-domain HRD68_03970 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain HRD68_03975 PF09619 Type III secretion system lipoprotein chaperone (YscW) HRD68_03985 PF00909 Ammonium Transporter Family HRD68_03990 PF00543 Nitrogen regulatory protein P-II HRD68_03995 PF00664 ABC transporter transmembrane region HRD68_03995 PF00005 ABC transporter HRD68_04000 PF00664 ABC transporter transmembrane region HRD68_04000 PF00005 ABC transporter HRD68_04005 PF01037 Lrp/AsnC ligand binding domain HRD68_04005 PF13404 AsnC-type helix-turn-helix domain HRD68_04020 PF12793 Sugar transport-related sRNA regulator N-term HRD68_04020 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle HRD68_04025 PF06508 Queuosine biosynthesis protein QueC HRD68_04040 PF13145 PPIC-type PPIASE domain HRD68_04045 PF00216 Bacterial DNA-binding protein HRD68_04050 PF00004 ATPase family associated with various cellular activities (AAA) HRD68_04050 PF05362 Lon protease (S16) C-terminal proteolytic domain HRD68_04050 PF02190 ATP-dependent protease La (LON) substrate-binding domain HRD68_04055 PF06689 ClpX C4-type zinc finger HRD68_04055 PF10431 C-terminal, D2-small domain, of ClpB protein HRD68_04055 PF07724 AAA domain (Cdc48 subfamily) HRD68_04060 PF00574 Clp protease HRD68_04065 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase HRD68_04065 PF05698 Bacterial trigger factor protein (TF) C-terminus HRD68_04065 PF05697 Bacterial trigger factor protein (TF) HRD68_04070 PF01722 BolA-like protein HRD68_04075 PF08139 Prokaryotic membrane lipoprotein lipid attachment site HRD68_04075 PF03923 Uncharacterized lipoprotein HRD68_04080 PF07690 Major Facilitator Superfamily HRD68_04085 PF03502 Nucleoside-specific channel-forming protein, Tsx HRD68_04090 PF06481 COX Aromatic Rich Motif HRD68_04090 PF00116 Cytochrome C oxidase subunit II, periplasmic domain HRD68_04095 PF00115 Cytochrome C and Quinol oxidase polypeptide I HRD68_04100 PF00510 Cytochrome c oxidase subunit III HRD68_04105 PF03626 Prokaryotic Cytochrome C oxidase subunit IV HRD68_04110 PF01040 UbiA prenyltransferase family HRD68_04115 PF07690 Major Facilitator Superfamily HRD68_04120 PF04461 Protein of unknown function (DUF520) HRD68_04125 PF08546 Ketopantoate reductase PanE/ApbA C terminal HRD68_04125 PF02558 Ketopantoate reductase PanE/ApbA HRD68_04130 PF01965 DJ-1/PfpI family HRD68_04135 PF02568 Thiamine biosynthesis protein (ThiI) HRD68_04135 PF02926 THUMP domain HRD68_04140 PF02609 Exonuclease VII small subunit HRD68_04145 PF00348 Polyprenyl synthetase HRD68_04150 PF02779 Transketolase, pyrimidine binding domain HRD68_04150 PF02780 Transketolase, C-terminal domain HRD68_04150 PF13292 1-deoxy-D-xylulose-5-phosphate synthase HRD68_04155 PF04608 Phosphatidylglycerophosphatase A HRD68_04160 PF02769 AIR synthase related protein, C-terminal domain HRD68_04160 PF00586 AIR synthase related protein, N-terminal domain HRD68_04165 PF01029 NusB family HRD68_04170 PF00885 6,7-dimethyl-8-ribityllumazine synthase HRD68_04175 PF01872 RibD C-terminal domain HRD68_04175 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region HRD68_04180 PF03477 ATP cone domain HRD68_04190 PF07549 SecD/SecF GG Motif HRD68_04190 PF02355 Protein export membrane protein HRD68_04195 PF13721 SecD export protein N-terminal TM region HRD68_04195 PF07549 SecD/SecF GG Motif HRD68_04195 PF02355 Protein export membrane protein HRD68_04200 PF02699 Preprotein translocase subunit HRD68_04205 PF01702 Queuine tRNA-ribosyltransferase HRD68_04210 PF02547 Queuosine biosynthesis protein HRD68_04215 PF04336 Acyl carrier protein phosphodiesterase HRD68_04220 PF00578 AhpC/TSA family HRD68_04220 PF10417 C-terminal domain of 1-Cys peroxiredoxin HRD68_04235 PF00128 Alpha amylase, catalytic domain HRD68_04235 PF02903 Alpha amylase, N-terminal ig-like domain HRD68_04240 PF00324 Amino acid permease HRD68_04245 PF05525 Branched-chain amino acid transport protein HRD68_04250 PF12849 PBP superfamily domain HRD68_04255 PF00512 His Kinase A (phospho-acceptor) domain HRD68_04255 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HRD68_04255 PF00989 PAS fold HRD68_04255 PF11808 Phosphate regulon sensor protein PhoR HRD68_04260 PF00486 Transcriptional regulatory protein, C terminal HRD68_04260 PF00072 Response regulator receiver domain HRD68_04265 PF00149 Calcineurin-like phosphoesterase HRD68_04265 PF12320 Type 5 capsule protein repressor C-terminal domain HRD68_04270 PF13476 AAA domain HRD68_04275 PF00480 ROK family HRD68_04280 PF04381 Putative exonuclease, RdgC HRD68_04285 PF06865 Pyrimidine/purine nucleoside phosphorylase HRD68_04290 PF01202 Shikimate kinase HRD68_04305 PF08241 Methyltransferase domain HRD68_04320 PF10091 Putative glucoamylase HRD68_04320 PF06165 Glycosyltransferase family 36 HRD68_04320 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain HRD68_04325 PF07317 Flagellar regulator YcgR HRD68_04325 PF07238 PilZ domain HRD68_04330 PF00171 Aldehyde dehydrogenase family HRD68_04335 PF01472 PUA domain HRD68_04335 PF00696 Amino acid kinase family HRD68_04340 PF07417 Sigma factor-binding transcriptional regulator Crl HRD68_04350 PF00156 Phosphoribosyl transferase domain HRD68_04355 PF07687 Peptidase dimerisation domain HRD68_04355 PF01546 Peptidase family M20/M25/M40 HRD68_04360 PF00817 impB/mucB/samB family HRD68_04360 PF11798 IMS family HHH motif HRD68_04360 PF11799 impB/mucB/samB family C-terminal domain HRD68_04365 PF03009 Glycerophosphoryl diester phosphodiesterase family HRD68_04370 PF04400 (Na+)-NQR maturation NqrM HRD68_04375 PF02424 ApbE family HRD68_04380 PF00175 Oxidoreductase NAD-binding domain HRD68_04380 PF00111 2Fe-2S iron-sulfur cluster binding domain HRD68_04380 PF00970 Oxidoreductase FAD-binding domain HRD68_04385 PF02508 Rnf-Nqr subunit, membrane protein HRD68_04390 PF02508 Rnf-Nqr subunit, membrane protein HRD68_04395 PF04205 FMN-binding domain HRD68_04400 PF03116 NQR2, RnfD, RnfE family HRD68_04405 PF11973 NQRA C-terminal domain HRD68_04405 PF05896 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) HRD68_04410 PF03734 L,D-transpeptidase catalytic domain HRD68_04415 PF13230 Glutamine amidotransferases class-II HRD68_04420 PF13580 SIS domain HRD68_04425 PF00441 Acyl-CoA dehydrogenase, C-terminal domain HRD68_04425 PF02771 Acyl-CoA dehydrogenase, N-terminal domain HRD68_04425 PF09317 Domain of unknown function (DUF1974) HRD68_04430 PF18254 HMW1 domain 2 HRD68_04430 PF18071 HMW1C N-terminal HRD68_04435 PF05860 haemagglutination activity domain HRD68_04440 PF08479 POTRA domain, ShlB-type HRD68_04440 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB HRD68_04445 PF01636 Phosphotransferase enzyme family HRD68_04450 PF01008 Initiation factor 2 subunit family HRD68_04455 PF03079 ARD/ARD' family HRD68_04465 PF00596 Class II Aldolase and Adducin N-terminal domain HRD68_04470 PF00155 Aminotransferase class I and II HRD68_04475 PF00795 Carbon-nitrogen hydrolase HRD68_04480 PF00266 Aminotransferase class-V HRD68_04485 PF07690 Major Facilitator Superfamily HRD68_04490 PF03591 AzlC protein HRD68_04495 PF05437 Branched-chain amino acid transport protein (AzlD) HRD68_04500 PF01047 MarR family HRD68_04510 PF00529 HlyD membrane-fusion protein of T1SS HRD68_04510 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion HRD68_04515 PF07690 Major Facilitator Superfamily HRD68_04520 PF00588 SpoU rRNA Methylase family HRD68_04520 PF08032 RNA 2'-O ribose methyltransferase substrate binding HRD68_04525 PF00085 Thioredoxin HRD68_04535 PF13607 Succinyl-CoA ligase like flavodoxin domain HRD68_04535 PF13380 CoA binding domain HRD68_04535 PF00583 Acetyltransferase (GNAT) family HRD68_04540 PF13091 PLD-like domain HRD68_04570 PF00004 ATPase family associated with various cellular activities (AAA) HRD68_04570 PF02861 Clp amino terminal domain, pathogenicity island component HRD68_04570 PF17871 AAA lid domain HRD68_04570 PF10431 C-terminal, D2-small domain, of ClpB protein HRD68_04570 PF07724 AAA domain (Cdc48 subfamily) HRD68_04580 PF01479 S4 domain HRD68_04580 PF00849 RNA pseudouridylate synthase HRD68_04585 PF13525 Outer membrane lipoprotein HRD68_04590 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein HRD68_04595 PF01817 Chorismate mutase type II HRD68_04595 PF00800 Prephenate dehydratase HRD68_04600 PF01817 Chorismate mutase type II HRD68_04600 PF02153 Prephenate dehydrogenase HRD68_04605 PF00793 DAHP synthetase I family HRD68_04610 PF04397 LytTr DNA-binding domain HRD68_04610 PF00072 Response regulator receiver domain HRD68_04615 PF03605 Anaerobic c4-dicarboxylate membrane transporter HRD68_04620 PF04338 Protein of unknown function, DUF481 HRD68_04625 PF01245 Ribosomal protein L19 HRD68_04630 PF01746 tRNA (Guanine-1)-methyltransferase HRD68_04635 PF01782 RimM N-terminal domain HRD68_04635 PF05239 PRC-barrel domain HRD68_04640 PF00886 Ribosomal protein S16 HRD68_04645 PF02978 Signal peptide binding domain HRD68_04645 PF00448 SRP54-type protein, GTPase domain HRD68_04645 PF02881 SRP54-type protein, helical bundle domain HRD68_04650 PF01578 Cytochrome C assembly protein HRD68_04655 PF03471 Transporter associated domain HRD68_04655 PF00571 CBS domain HRD68_04655 PF01595 Cyclin M transmembrane N-terminal domain HRD68_04660 PF02664 S-Ribosylhomocysteinase (LuxS) HRD68_04665 PF04262 Glutamate-cysteine ligase HRD68_04670 PF09335 SNARE associated Golgi protein HRD68_04675 PF13419 Haloacid dehalogenase-like hydrolase HRD68_04700 PF02599 Global regulator protein family HRD68_04705 PF02272 DHHA1 domain HRD68_04705 PF01411 tRNA synthetases class II (A) HRD68_04705 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain HRD68_04710 PF02631 RecX family HRD68_04715 PF00154 recA bacterial DNA recombination protein HRD68_04720 PF02464 Competence-damaged protein HRD68_04725 PF07690 Major Facilitator Superfamily HRD68_04740 PF02782 FGGY family of carbohydrate kinases, C-terminal domain HRD68_04740 PF00370 FGGY family of carbohydrate kinases, N-terminal domain HRD68_04745 PF02780 Transketolase, C-terminal domain HRD68_04745 PF02779 Transketolase, pyrimidine binding domain HRD68_04750 PF00456 Transketolase, thiamine diphosphate binding domain HRD68_04755 PF02653 Branched-chain amino acid transport system / permease component HRD68_04760 PF00005 ABC transporter HRD68_04785 PF02613 Nitrate reductase delta subunit HRD68_04790 PF04976 DMSO reductase anchor subunit (DmsC) HRD68_04795 PF13247 4Fe-4S dicluster domain HRD68_04795 PF12800 4Fe-4S binding domain HRD68_04800 PF04879 Molybdopterin oxidoreductase Fe4S4 domain HRD68_04800 PF00384 Molybdopterin oxidoreductase HRD68_04800 PF01568 Molydopterin dinucleotide binding domain HRD68_04805 PF00465 Iron-containing alcohol dehydrogenase HRD68_04810 PF00596 Class II Aldolase and Adducin N-terminal domain HRD68_04815 PF07690 Major Facilitator Superfamily HRD68_04820 PF07882 L-fucose isomerase, second N-terminal domain HRD68_04820 PF07881 L-fucose isomerase, first N-terminal domain HRD68_04820 PF02952 L-fucose isomerase, C-terminal domain HRD68_04825 PF02782 FGGY family of carbohydrate kinases, C-terminal domain HRD68_04825 PF00370 FGGY family of carbohydrate kinases, N-terminal domain HRD68_04830 PF05025 RbsD / FucU transport protein family HRD68_04835 PF08220 DeoR-like helix-turn-helix domain HRD68_04835 PF00455 DeoR C terminal sensor domain HRD68_04840 PF00596 Class II Aldolase and Adducin N-terminal domain HRD68_04845 PF00455 DeoR C terminal sensor domain HRD68_04845 PF08220 DeoR-like helix-turn-helix domain HRD68_04855 PF00005 ABC transporter HRD68_04860 PF02653 Branched-chain amino acid transport system / permease component HRD68_04865 PF02653 Branched-chain amino acid transport system / permease component HRD68_04870 PF01261 Xylose isomerase-like TIM barrel HRD68_04875 PF00370 FGGY family of carbohydrate kinases, N-terminal domain HRD68_04875 PF02782 FGGY family of carbohydrate kinases, C-terminal domain HRD68_04880 PF05681 Fumarate hydratase (Fumerase) HRD68_04880 PF05683 Fumarase C-terminus HRD68_04885 PF13458 Periplasmic binding protein HRD68_04890 PF02653 Branched-chain amino acid transport system / permease component HRD68_04895 PF02653 Branched-chain amino acid transport system / permease component HRD68_04895 PF11862 Domain of unknown function (DUF3382) HRD68_04900 PF00005 ABC transporter HRD68_04905 PF00005 ABC transporter HRD68_04925 PF00795 Carbon-nitrogen hydrolase HRD68_04930 PF04198 Putative sugar-binding domain HRD68_04930 PF13936 Helix-turn-helix domain HRD68_04935 PF03610 PTS system fructose IIA component HRD68_04940 PF03830 PTS system sorbose subfamily IIB component HRD68_04945 PF03609 PTS system sorbose-specific iic component HRD68_04950 PF03613 PTS system mannose/fructose/sorbose family IID component HRD68_04955 PF08240 Alcohol dehydrogenase GroES-like domain HRD68_04955 PF00107 Zinc-binding dehydrogenase HRD68_04960 PF01022 Bacterial regulatory protein, arsR family HRD68_04965 PF14492 Elongation Factor G, domain II HRD68_04965 PF00009 Elongation factor Tu GTP binding domain HRD68_04965 PF03144 Elongation factor Tu domain 2 HRD68_04965 PF00679 Elongation factor G C-terminus HRD68_04965 PF03764 Elongation factor G, domain IV HRD68_04980 PF01546 Peptidase family M20/M25/M40 HRD68_04985 PF00005 ABC transporter HRD68_04990 PF00528 Binding-protein-dependent transport system inner membrane component HRD68_04995 PF00528 Binding-protein-dependent transport system inner membrane component HRD68_05005 PF00291 Pyridoxal-phosphate dependent enzyme HRD68_05010 PF02447 GntP family permease HRD68_05015 PF03466 LysR substrate binding domain HRD68_05015 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HRD68_05020 PF00005 ABC transporter HRD68_05020 PF08352 Oligopeptide/dipeptide transporter, C-terminal region HRD68_05025 PF00005 ABC transporter HRD68_05025 PF08352 Oligopeptide/dipeptide transporter, C-terminal region HRD68_05035 PF00528 Binding-protein-dependent transport system inner membrane component HRD68_05040 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle HRD68_05045 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain HRD68_05045 PF13378 Enolase C-terminal domain-like HRD68_05050 PF00155 Aminotransferase class I and II HRD68_05055 PF00497 Bacterial extracellular solute-binding proteins, family 3 HRD68_05080 PF00109 Beta-ketoacyl synthase, N-terminal domain HRD68_05080 PF02801 Beta-ketoacyl synthase, C-terminal domain HRD68_05085 PF02321 Outer membrane efflux protein HRD68_05090 PF00005 ABC transporter HRD68_05090 PF12704 MacB-like periplasmic core domain HRD68_05090 PF02687 FtsX-like permease family HRD68_05095 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion HRD68_05100 PF03412 Peptidase C39 family HRD68_05100 PF00664 ABC transporter transmembrane region HRD68_05100 PF00005 ABC transporter HRD68_05125 PF00419 Fimbrial protein HRD68_05130 PF00419 Fimbrial protein HRD68_05145 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain HRD68_05145 PF02753 Pili assembly chaperone PapD, C-terminal domain HRD68_05150 PF00577 Outer membrane usher protein HRD68_05150 PF13954 PapC N-terminal domain HRD68_05150 PF13953 PapC C-terminal domain HRD68_05160 PF00419 Fimbrial protein HRD68_05175 PF07075 Protein of unknown function (DUF1343) HRD68_05185 PF00933 Glycosyl hydrolase family 3 N terminal domain HRD68_05185 PF01915 Glycosyl hydrolase family 3 C-terminal domain HRD68_05190 PF01418 Helix-turn-helix domain, rpiR family HRD68_05190 PF01380 SIS domain HRD68_05195 PF13580 SIS domain HRD68_05200 PF02378 Phosphotransferase system, EIIC HRD68_05200 PF00367 phosphotransferase system, EIIB HRD68_05210 PF13953 PapC C-terminal domain HRD68_05210 PF13954 PapC N-terminal domain HRD68_05210 PF00577 Outer membrane usher protein HRD68_05215 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain HRD68_05215 PF02753 Pili assembly chaperone PapD, C-terminal domain HRD68_05220 PF02753 Pili assembly chaperone PapD, C-terminal domain HRD68_05220 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain HRD68_05230 PF02753 Pili assembly chaperone PapD, C-terminal domain HRD68_05230 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain HRD68_05245 PF01053 Cys/Met metabolism PLP-dependent enzyme HRD68_05255 PF01624 MutS domain I HRD68_05255 PF05192 MutS domain III HRD68_05255 PF05190 MutS family domain IV HRD68_05255 PF05188 MutS domain II HRD68_05255 PF00488 MutS domain V HRD68_05260 PF00140 Sigma-70 factor, region 1.2 HRD68_05260 PF04542 Sigma-70 region 2 HRD68_05260 PF04539 Sigma-70 region 3 HRD68_05260 PF04545 Sigma-70, region 4 HRD68_05265 PF01476 LysM domain HRD68_05265 PF01551 Peptidase family M23 HRD68_05275 PF01975 Survival protein SurE HRD68_05280 PF01142 tRNA pseudouridine synthase D (TruD) HRD68_05285 PF02542 YgbB family HRD68_05290 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase HRD68_05295 PF04977 Septum formation initiator HRD68_05300 PF00497 Bacterial extracellular solute-binding proteins, family 3 HRD68_05305 PF00528 Binding-protein-dependent transport system inner membrane component HRD68_05310 PF00005 ABC transporter HRD68_05315 PF12084 Protein of unknown function (DUF3561) HRD68_05325 PF00009 Elongation factor Tu GTP binding domain HRD68_05330 PF01507 Phosphoadenosine phosphosulfate reductase family HRD68_05335 PF10414 Sirohaem synthase dimerisation region HRD68_05335 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases HRD68_05335 PF14824 Sirohaem biosynthesis protein central HRD68_05340 PF04389 Peptidase family M28 HRD68_05345 PF01507 Phosphoadenosine phosphosulfate reductase family HRD68_05350 PF01077 Nitrite and sulphite reductase 4Fe-4S domain HRD68_05350 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain HRD68_05355 PF00175 Oxidoreductase NAD-binding domain HRD68_05355 PF00667 FAD binding domain HRD68_05355 PF00258 Flavodoxin HRD68_05360 PF01242 6-pyruvoyl tetrahydropterin synthase HRD68_05365 PF04055 Radical SAM superfamily HRD68_05370 PF00080 Copper/zinc superoxide dismutase (SODC) HRD68_05375 PF03952 Enolase, N-terminal domain HRD68_05375 PF00113 Enolase, C-terminal TIM barrel domain HRD68_05380 PF06418 CTP synthase N-terminus HRD68_05380 PF00117 Glutamine amidotransferase class-I HRD68_05385 PF03819 MazG nucleotide pyrophosphohydrolase domain HRD68_05390 PF13291 ACT domain HRD68_05390 PF02824 TGS domain HRD68_05390 PF04607 Region found in RelA / SpoT proteins HRD68_05395 PF01938 TRAM domain HRD68_05395 PF05958 tRNA (Uracil-5-)-methyltransferase HRD68_05400 PF01627 Hpt domain HRD68_05400 PF00512 His Kinase A (phospho-acceptor) domain HRD68_05400 PF00672 HAMP domain HRD68_05400 PF00072 Response regulator receiver domain HRD68_05400 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) HRD68_05400 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HRD68_05405 PF00595 PDZ domain HRD68_05410 PF01966 HD domain HRD68_05410 PF13286 Phosphohydrolase-associated domain HRD68_05415 PF01048 Phosphorylase superfamily HRD68_05420 PF01497 Periplasmic binding protein HRD68_05425 PF03458 UPF0126 domain HRD68_05435 PF01521 Iron-sulphur cluster biosynthesis HRD68_05440 PF00654 Voltage gated chloride channel HRD68_05445 PF00202 Aminotransferase class-III HRD68_05450 PF01032 FecCD transport family HRD68_05455 PF01497 Periplasmic binding protein HRD68_05460 PF00005 ABC transporter HRD68_05465 PF14814 Bifunctional transglycosylase second domain HRD68_05465 PF00905 Penicillin binding protein transpeptidase domain HRD68_05465 PF00912 Transglycosylase HRD68_05465 PF14812 Transmembrane domain of transglycosylase PBP1 at N-terminal HRD68_05470 PF08482 ATP-dependent helicase C-terminal HRD68_05470 PF00270 DEAD/DEAH box helicase HRD68_05470 PF00271 Helicase conserved C-terminal domain HRD68_05470 PF04408 Helicase associated domain (HA2) HRD68_05475 PF02834 LigT like Phosphoesterase HRD68_05485 PF01258 Prokaryotic dksA/traR C4-type zinc finger HRD68_05490 PF00749 tRNA synthetases class I (E and Q), catalytic domain HRD68_05495 PF01743 Poly A polymerase head domain HRD68_05495 PF12626 Polymerase A arginine-rich C-terminus HRD68_05495 PF12627 Probable RNA and SrmB- binding site of polymerase A HRD68_05500 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) HRD68_05505 PF02548 Ketopantoate hydroxymethyltransferase HRD68_05510 PF02569 Pantoate-beta-alanine ligase HRD68_05515 PF02261 Aspartate decarboxylase HRD68_05520 PF01522 Polysaccharide deacetylase HRD68_05525 PF01061 ABC-2 type transporter HRD68_05530 PF00005 ABC transporter HRD68_05535 PF00484 Carbonic anhydrase HRD68_05540 PF00156 Phosphoribosyl transferase domain HRD68_05550 PF07731 Multicopper oxidase HRD68_05550 PF07732 Multicopper oxidase HRD68_05550 PF10518 TAT (twin-arginine translocation) pathway signal sequence HRD68_05550 PF00394 Multicopper oxidase HRD68_05555 PF09691 Type II secretion system pilotin lipoprotein (PulS_OutS) HRD68_05560 PF17284 Spermidine synthase tetramerisation domain HRD68_05565 PF02675 S-adenosylmethionine decarboxylase HRD68_05570 PF00892 EamA-like transporter family HRD68_05575 PF06062 Uncharacterised protein family (UPF0231) HRD68_05580 PF11791 Aconitate B N-terminal domain HRD68_05580 PF00330 Aconitase family (aconitate hydratase) HRD68_05580 PF06434 Aconitate hydratase 2 N-terminus HRD68_05585 PF07715 TonB-dependent Receptor Plug Domain HRD68_05585 PF00593 TonB dependent receptor HRD68_05595 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain HRD68_05595 PF07992 Pyridine nucleotide-disulphide oxidoreductase HRD68_05600 PF00364 Biotin-requiring enzyme HRD68_05600 PF02817 e3 binding domain HRD68_05600 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) HRD68_05605 PF17831 Pyruvate dehydrogenase E1 component middle domain HRD68_05605 PF00456 Transketolase, thiamine diphosphate binding domain HRD68_05610 PF00392 Bacterial regulatory proteins, gntR family HRD68_05610 PF07729 FCD domain HRD68_05615 PF00324 Amino acid permease HRD68_05620 PF02369 Bacterial Ig-like domain (group 1) HRD68_05620 PF02368 Bacterial Ig-like domain (group 2) HRD68_05620 PF11924 Inverse autotransporter, beta-domain HRD68_05620 PF01476 LysM domain HRD68_05620 PF07979 Intimin C-type lectin domain HRD68_05625 PF17113 Regulatory signalling modulator protein AmpE HRD68_05630 PF01510 N-acetylmuramoyl-L-alanine amidase HRD68_05635 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain HRD68_05635 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain HRD68_05640 PF07963 Prokaryotic N-terminal methylation motif HRD68_05645 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain HRD68_05645 PF00437 Type II/IV secretion system protein HRD68_05650 PF00482 Type II secretion system (T2SS), protein F HRD68_05655 PF00478 IMP dehydrogenase / GMP reductase domain HRD68_05660 PF01121 Dephospho-CoA kinase HRD68_05665 PF07072 Cell division protein HRD68_05670 PF03884 DNA gyrase inhibitor YacG HRD68_05675 PF00293 NUDIX domain HRD68_05680 PF02810 SEC-C motif HRD68_05680 PF07516 SecA Wing and Scaffold domain HRD68_05680 PF07517 SecA DEAD-like domain HRD68_05680 PF01043 SecA preprotein cross-linking domain HRD68_05685 PF06558 Secretion monitor precursor protein (SecM) HRD68_05695 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase HRD68_05700 PF00091 Tubulin/FtsZ family, GTPase domain HRD68_05700 PF12327 FtsZ family, C-terminal domain HRD68_05705 PF02491 SHS2 domain inserted in FTSA HRD68_05710 PF03799 Cell division protein FtsQ HRD68_05710 PF08478 POTRA domain, FtsQ-type HRD68_05715 PF01820 D-ala D-ala ligase N-terminus HRD68_05715 PF07478 D-ala D-ala ligase C-terminus HRD68_05720 PF01225 Mur ligase family, catalytic domain HRD68_05720 PF08245 Mur ligase middle domain HRD68_05720 PF02875 Mur ligase family, glutamate ligase domain HRD68_05725 PF04101 Glycosyltransferase family 28 C-terminal domain HRD68_05725 PF03033 Glycosyltransferase family 28 N-terminal domain HRD68_05730 PF01098 Cell cycle protein HRD68_05735 PF08245 Mur ligase middle domain HRD68_05735 PF02875 Mur ligase family, glutamate ligase domain HRD68_05740 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 HRD68_05740 PF00953 Glycosyl transferase family 4 HRD68_05745 PF08245 Mur ligase middle domain HRD68_05745 PF02875 Mur ligase family, glutamate ligase domain HRD68_05745 PF01225 Mur ligase family, catalytic domain HRD68_05750 PF01225 Mur ligase family, catalytic domain HRD68_05750 PF02875 Mur ligase family, glutamate ligase domain HRD68_05750 PF08245 Mur ligase middle domain HRD68_05755 PF03717 Penicillin-binding Protein dimerisation domain HRD68_05755 PF00905 Penicillin binding protein transpeptidase domain HRD68_05760 PF04999 Cell division protein FtsL HRD68_05765 PF01795 MraW methylase family HRD68_05770 PF02381 MraZ protein, putative antitoxin-like HRD68_05775 PF06610 L-alanine exporter HRD68_05780 PF00356 Bacterial regulatory proteins, lacI family HRD68_05780 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family HRD68_05785 PF10369 Small subunit of acetolactate synthase HRD68_05790 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain HRD68_05790 PF00205 Thiamine pyrophosphate enzyme, central domain HRD68_05790 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain HRD68_05795 PF00501 AMP-binding enzyme HRD68_05800 PF03466 LysR substrate binding domain HRD68_05800 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HRD68_05810 PF08502 LeuA allosteric (dimerisation) domain HRD68_05810 PF00682 HMGL-like HRD68_05815 PF00180 Isocitrate/isopropylmalate dehydrogenase HRD68_05820 PF00330 Aconitase family (aconitate hydratase) HRD68_05825 PF00694 Aconitase C-terminal domain HRD68_05835 PF01212 Beta-eliminating lyase HRD68_05840 PF03222 Tryptophan/tyrosine permease family HRD68_05845 PF07690 Major Facilitator Superfamily HRD68_05850 PF01228 Glycine radical HRD68_05850 PF02901 Pyruvate formate lyase-like HRD68_05855 PF04055 Radical SAM superfamily HRD68_05860 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle HRD68_05860 PF12793 Sugar transport-related sRNA regulator N-term HRD68_05870 PF00528 Binding-protein-dependent transport system inner membrane component HRD68_05875 PF00005 ABC transporter HRD68_05880 PF09335 SNARE associated Golgi protein HRD68_05885 PF03104 DNA polymerase family B, exonuclease domain HRD68_05885 PF00136 DNA polymerase family B HRD68_05890 PF18337 RapA N-terminal Tudor like domain HRD68_05890 PF18339 RapA N-terminal Tudor like domain 1 HRD68_05890 PF00176 SNF2 family N-terminal domain HRD68_05890 PF12137 RNA polymerase recycling family C-terminal HRD68_05890 PF00271 Helicase conserved C-terminal domain HRD68_05895 PF08021 Siderophore-interacting FAD-binding domain HRD68_05895 PF04954 Siderophore-interacting protein HRD68_05905 PF06276 Ferric iron reductase FhuF-like transporter HRD68_05905 PF04183 IucA / IucC family HRD68_05915 PF06276 Ferric iron reductase FhuF-like transporter HRD68_05915 PF04183 IucA / IucC family HRD68_05920 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) HRD68_05925 PF07715 TonB-dependent Receptor Plug Domain HRD68_05925 PF00593 TonB dependent receptor HRD68_05930 PF00849 RNA pseudouridylate synthase HRD68_05940 PF00226 DnaJ domain HRD68_05940 PF05099 Tellurite resistance protein TerB HRD68_05945 PF03968 OstA-like protein HRD68_05945 PF04453 LPS transport system D HRD68_05950 PF09312 SurA N-terminal domain HRD68_05950 PF00639 PPIC-type PPIASE domain HRD68_05955 PF04166 Pyridoxal phosphate biosynthetic protein PdxA HRD68_05960 PF00398 Ribosomal RNA adenine dimethylase HRD68_05965 PF04379 ApaG domain HRD68_05970 PF00149 Calcineurin-like phosphoesterase HRD68_05975 PF00186 Dihydrofolate reductase HRD68_05980 PF12821 Threonine/Serine exporter, ThrE HRD68_05985 PF06738 Putative threonine/serine exporter HRD68_05990 PF01810 LysE type translocator HRD68_05995 PF02142 MGS-like domain HRD68_05995 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain HRD68_05995 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain HRD68_06000 PF00117 Glutamine amidotransferase class-I HRD68_06000 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain HRD68_06005 PF01113 Dihydrodipicolinate reductase, N-terminus HRD68_06005 PF05173 Dihydrodipicolinate reductase, C-terminus HRD68_06010 PF02401 LytB protein HRD68_06015 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase HRD68_06020 PF01252 Signal peptidase (SPase) II HRD68_06025 PF00133 tRNA synthetases class I (I, L, M and V) HRD68_06025 PF06827 Zinc finger found in FPG and IleRS HRD68_06025 PF08264 Anticodon-binding domain of tRNA HRD68_06030 PF06574 FAD synthetase HRD68_06030 PF01687 Riboflavin kinase HRD68_06045 PF01649 Ribosomal protein S20 HRD68_06050 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HRD68_06050 PF03466 LysR substrate binding domain HRD68_06055 PF06965 Na+/H+ antiporter 1 HRD68_06065 PF00684 DnaJ central domain HRD68_06065 PF00226 DnaJ domain HRD68_06065 PF01556 DnaJ C terminal domain HRD68_06070 PF00012 Hsp70 protein HRD68_06075 PF01184 GPR1/FUN34/yaaH family HRD68_06085 PF00083 Sugar (and other) transporter HRD68_06085 PF08946 Osmosensory transporter coiled coil HRD68_06090 PF00994 Probable molybdopterin binding domain HRD68_06095 PF00923 Transaldolase/Fructose-6-phosphate aldolase HRD68_06100 PF03883 Peroxide stress protein YaaA HRD68_06105 PF14821 Threonine synthase N terminus HRD68_06105 PF00291 Pyridoxal-phosphate dependent enzyme HRD68_06110 PF08544 GHMP kinases C terminal HRD68_06110 PF00288 GHMP kinases N terminal domain HRD68_06115 PF00742 Homoserine dehydrogenase HRD68_06115 PF00696 Amino acid kinase family HRD68_06115 PF13840 ACT domain HRD68_06115 PF01842 ACT domain HRD68_06115 PF03447 Homoserine dehydrogenase, NAD binding domain HRD68_06120 PF08254 Threonine leader peptide HRD68_06125 PF00072 Response regulator receiver domain HRD68_06125 PF00486 Transcriptional regulatory protein, C terminal HRD68_06130 PF05981 CreA protein HRD68_06135 PF06445 GyrI-like small molecule binding domain HRD68_06135 PF12833 Helix-turn-helix domain HRD68_06140 PF00300 Histidine phosphatase superfamily (branch 1) HRD68_06145 PF01931 Protein of unknown function DUF84 HRD68_06150 PF01371 Trp repressor protein HRD68_06155 PF14718 Soluble lytic murein transglycosylase L domain HRD68_06155 PF01464 Transglycosylase SLT domain HRD68_06160 PF00689 Cation transporting ATPase, C-terminus HRD68_06160 PF00690 Cation transporter/ATPase, N-terminus HRD68_06170 PF00990 Diguanylate cyclase, GGDEF domain HRD68_06170 PF17152 Periplasmic sensor domain HRD68_06175 PF00691 OmpA family HRD68_06180 PF00005 ABC transporter HRD68_06180 PF12848 ABC transporter HRD68_06185 PF06379 L-rhamnose-proton symport protein (RhaT) HRD68_06190 PF12833 Helix-turn-helix domain HRD68_06190 PF02311 AraC-like ligand binding domain HRD68_06195 PF02311 AraC-like ligand binding domain HRD68_06195 PF12833 Helix-turn-helix domain HRD68_06200 PF02782 FGGY family of carbohydrate kinases, C-terminal domain HRD68_06200 PF00370 FGGY family of carbohydrate kinases, N-terminal domain HRD68_06205 PF06134 L-rhamnose isomerase (RhaA) HRD68_06210 PF00596 Class II Aldolase and Adducin N-terminal domain HRD68_06215 PF00465 Iron-containing alcohol dehydrogenase HRD68_06220 PF05336 L-rhamnose mutarotase HRD68_06225 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HRD68_06225 PF03466 LysR substrate binding domain HRD68_06230 PF00107 Zinc-binding dehydrogenase HRD68_06230 PF08240 Alcohol dehydrogenase GroES-like domain HRD68_06235 PF01381 Helix-turn-helix HRD68_06235 PF13521 AAA domain HRD68_06240 PF18073 Rubredoxin metal binding domain HRD68_06245 PF18429 Domain of unknown function (DUF5609) HRD68_06250 PF10144 Bacterial virulence factor haemolysin HRD68_06255 PF05016 ParE toxin of type II toxin-antitoxin system, parDE HRD68_06265 PF01048 Phosphorylase superfamily HRD68_06270 PF01676 Metalloenzyme superfamily HRD68_06275 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain HRD68_06275 PF00591 Glycosyl transferase family, a/b domain HRD68_06275 PF02885 Glycosyl transferase family, helical bundle domain HRD68_06280 PF01791 DeoC/LacD family aldolase HRD68_06285 PF01773 Na+ dependent nucleoside transporter N-terminus HRD68_06285 PF07670 Nucleoside recognition HRD68_06285 PF07662 Na+ dependent nucleoside transporter C-terminus HRD68_06290 PF01026 TatD related DNase HRD68_06295 PF01734 Patatin-like phospholipase HRD68_06300 PF07043 Protein of unknown function (DUF1328) HRD68_06305 PF04972 BON domain HRD68_06310 PF00009 Elongation factor Tu GTP binding domain HRD68_06310 PF03144 Elongation factor Tu domain 2 HRD68_06310 PF16658 Class II release factor RF3, C-terminal domain HRD68_06315 PF00583 Acetyltransferase (GNAT) family HRD68_06320 PF03603 DNA polymerase III psi subunit HRD68_06325 PF08468 Methyltransferase small domain N-terminal HRD68_06325 PF05175 Methyltransferase small domain HRD68_06330 PF00248 Aldo/keto reductase family HRD68_06335 PF03466 LysR substrate binding domain HRD68_06335 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HRD68_06355 PF07256 Protein of unknown function (DUF1435) HRD68_06360 PF00990 Diguanylate cyclase, GGDEF domain HRD68_06365 PF00158 Sigma-54 interaction domain HRD68_06365 PF02954 Bacterial regulatory protein, Fis family HRD68_06365 PF00989 PAS fold HRD68_06375 PF07690 Major Facilitator Superfamily HRD68_06390 PF16861 Carbamoyltransferase C-terminus HRD68_06390 PF02543 Carbamoyltransferase N-terminus HRD68_06400 PF03610 PTS system fructose IIA component HRD68_06400 PF05524 PEP-utilising enzyme, N-terminal HRD68_06400 PF00391 PEP-utilising enzyme, mobile domain HRD68_06400 PF00381 PTS HPr component phosphorylation site HRD68_06405 PF02734 DAK2 domain HRD68_06410 PF02733 Dak1 domain HRD68_06415 PF00465 Iron-containing alcohol dehydrogenase HRD68_06420 PF00873 AcrB/AcrD/AcrF family HRD68_06425 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion HRD68_06435 PF13520 Amino acid permease HRD68_06445 PF01075 Glycosyltransferase family 9 (heptosyltransferase) HRD68_06450 PF00370 FGGY family of carbohydrate kinases, N-terminal domain HRD68_06450 PF02782 FGGY family of carbohydrate kinases, C-terminal domain HRD68_06455 PF00325 Bacterial regulatory proteins, crp family HRD68_06455 PF04198 Putative sugar-binding domain HRD68_06460 PF00005 ABC transporter HRD68_06465 PF02653 Branched-chain amino acid transport system / permease component HRD68_06470 PF02653 Branched-chain amino acid transport system / permease component HRD68_06475 PF13407 Periplasmic binding protein domain HRD68_06480 PF01791 DeoC/LacD family aldolase HRD68_06485 PF03992 Antibiotic biosynthesis monooxygenase HRD68_06490 PF10696 Protein of unknown function (DUF2501) HRD68_06495 PF13657 HipA N-terminal domain HRD68_06495 PF07804 HipA-like C-terminal domain HRD68_06500 PF01381 Helix-turn-helix HRD68_06505 PF04655 Aminoglycoside/hydroxyurea antibiotic resistance kinase HRD68_06510 PF01740 STAS domain HRD68_06510 PF00916 Sulfate permease family HRD68_06515 PF00196 Bacterial regulatory proteins, luxR family HRD68_06515 PF03472 Autoinducer binding domain HRD68_06530 PF06154 CbeA_antitoxin, type IV, cytoskeleton bundling-enhancing factor A HRD68_06535 PF06755 CbtA_toxin of type IV toxin-antitoxin system HRD68_06540 PF03230 Antirestriction protein HRD68_06545 PF06067 Domain of unknown function (DUF932) HRD68_06595 PF07728 AAA domain (dynein-related subfamily) HRD68_06595 PF12102 Domain of unknown function (DUF3578) HRD68_06610 PF18766 SWI2/SNF2 ATPase HRD68_06610 PF12008 Type I restriction and modification enzyme - subunit R C terminal HRD68_06610 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) HRD68_06615 PF02384 N-6 DNA Methylase HRD68_06640 PF13356 Arm DNA-binding domain HRD68_06640 PF00589 Phage integrase family HRD68_06650 PF03739 Lipopolysaccharide export system permease LptF/LptG HRD68_06655 PF03739 Lipopolysaccharide export system permease LptF/LptG HRD68_06660 PF00883 Cytosol aminopeptidase family, catalytic domain HRD68_06660 PF02789 Cytosol aminopeptidase family, N-terminal domain HRD68_06665 PF04364 DNA polymerase III chi subunit, HolC HRD68_06670 PF10458 Valyl tRNA synthetase tRNA binding arm HRD68_06670 PF00133 tRNA synthetases class I (I, L, M and V) HRD68_06670 PF08264 Anticodon-binding domain of tRNA HRD68_06675 PF00583 Acetyltransferase (GNAT) family HRD68_06680 PF06877 Regulator of ribonuclease activity B HRD68_06685 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain HRD68_06685 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain HRD68_06690 PF04074 YhcH/YjgK/YiaL HRD68_06700 PF00528 Binding-protein-dependent transport system inner membrane component HRD68_06710 PF00005 ABC transporter HRD68_06710 PF08352 Oligopeptide/dipeptide transporter, C-terminal region HRD68_06715 PF08352 Oligopeptide/dipeptide transporter, C-terminal region HRD68_06715 PF00005 ABC transporter HRD68_06730 PF13597 Anaerobic ribonucleoside-triphosphate reductase HRD68_06730 PF03477 ATP cone domain HRD68_06750 PF07702 UTRA domain HRD68_06750 PF00392 Bacterial regulatory proteins, gntR family HRD68_06755 PF06754 Phosphonate metabolism protein PhnG HRD68_06760 PF05845 Bacterial phosphonate metabolism protein (PhnH) HRD68_06765 PF05861 Bacterial phosphonate metabolism protein (PhnI) HRD68_06770 PF06007 Phosphonate metabolism protein PhnJ HRD68_06775 PF00005 ABC transporter HRD68_06780 PF00005 ABC transporter HRD68_06785 PF07969 Amidohydrolase family HRD68_06795 PF12706 Beta-lactamase superfamily domain HRD68_06800 PF13460 NAD(P)H-binding HRD68_06815 PF00005 ABC transporter HRD68_06815 PF17912 MalK OB fold domain HRD68_06815 PF03459 TOBE domain HRD68_06820 PF00528 Binding-protein-dependent transport system inner membrane component HRD68_06825 PF00528 Binding-protein-dependent transport system inner membrane component HRD68_06830 PF13416 Bacterial extracellular solute-binding protein HRD68_06840 PF05426 Alginate lyase HRD68_06840 PF07940 Heparinase II/III-like protein HRD68_06850 PF01276 Orn/Lys/Arg decarboxylase, major domain HRD68_06850 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain HRD68_06850 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain HRD68_06855 PF13520 Amino acid permease HRD68_06860 PF01541 GIY-YIG catalytic domain HRD68_06865 PF13508 Acetyltransferase (GNAT) domain HRD68_06870 PF02036 SCP-2 sterol transfer family HRD68_06875 PF01136 Peptidase family U32 HRD68_06880 PF01136 Peptidase family U32 HRD68_06885 PF03313 Serine dehydratase alpha chain HRD68_06895 PF00296 Luciferase-like monooxygenase HRD68_06900 PF03880 DbpA RNA binding domain HRD68_06900 PF00270 DEAD/DEAH box helicase HRD68_06900 PF00271 Helicase conserved C-terminal domain HRD68_06900 PF12343 Cold shock protein DEAD box A HRD68_06910 PF13181 Tetratricopeptide repeat HRD68_06910 PF07719 Tetratricopeptide repeat HRD68_06915 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain HRD68_06915 PF01138 3' exoribonuclease family, domain 1 HRD68_06915 PF00013 KH domain HRD68_06915 PF00575 S1 RNA binding domain HRD68_06915 PF03725 3' exoribonuclease family, domain 2 HRD68_06920 PF00312 Ribosomal protein S15 HRD68_06925 PF09157 Pseudouridine synthase II TruB, C-terminal HRD68_06925 PF01509 TruB family pseudouridylate synthase (N terminal domain) HRD68_06925 PF16198 tRNA pseudouridylate synthase B C-terminal domain HRD68_06930 PF02033 Ribosome-binding factor A HRD68_06935 PF11987 Translation-initiation factor 2 HRD68_06935 PF08364 Bacterial translation initiation factor IF-2 associated region HRD68_06935 PF03144 Elongation factor Tu domain 2 HRD68_06935 PF00009 Elongation factor Tu GTP binding domain HRD68_06935 PF04760 Translation initiation factor IF-2, N-terminal region HRD68_06940 PF13184 NusA-like KH domain HRD68_06940 PF08529 NusA N-terminal domain HRD68_06940 PF00575 S1 RNA binding domain HRD68_06945 PF17384 RimP C-terminal SH3 domain HRD68_06945 PF02576 RimP N-terminal domain HRD68_06960 PF03840 Preprotein translocase SecG subunit HRD68_06965 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I HRD68_06965 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II HRD68_06965 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III HRD68_06965 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain HRD68_06970 PF00809 Pterin binding enzyme HRD68_06975 PF06480 FtsH Extracellular HRD68_06975 PF00004 ATPase family associated with various cellular activities (AAA) HRD68_06975 PF01434 Peptidase family M41 HRD68_06975 PF17862 AAA+ lid domain HRD68_06980 PF01728 FtsJ-like methyltransferase HRD68_06985 PF01985 CRS1 / YhbY (CRM) domain HRD68_06990 PF01272 Transcription elongation factor, GreA/GreB, C-term HRD68_06990 PF03449 Transcription elongation factor, N-terminal HRD68_06995 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family HRD68_07000 PF00072 Response regulator receiver domain HRD68_07000 PF00486 Transcriptional regulatory protein, C terminal HRD68_07005 PF00672 HAMP domain HRD68_07005 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HRD68_07005 PF00512 His Kinase A (phospho-acceptor) domain HRD68_07010 PF01926 50S ribosome-binding GTPase HRD68_07010 PF01018 GTP1/OBG HRD68_07015 PF00892 EamA-like transporter family HRD68_07020 PF01016 Ribosomal L27 protein HRD68_07025 PF00829 Ribosomal prokaryotic L21 protein HRD68_07030 PF00348 Polyprenyl synthetase HRD68_07040 PF13693 Winged helix-turn-helix DNA-binding HRD68_07045 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain HRD68_07045 PF00056 lactate/malate dehydrogenase, NAD binding domain HRD68_07050 PF02863 Arginine repressor, C-terminal domain HRD68_07050 PF01316 Arginine repressor, DNA binding domain HRD68_07060 PF01225 Mur ligase family, catalytic domain HRD68_07060 PF02875 Mur ligase family, glutamate ligase domain HRD68_07060 PF08245 Mur ligase middle domain HRD68_07065 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain HRD68_07070 PF00672 HAMP domain HRD68_07070 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HRD68_07070 PF02203 Tar ligand binding domain homologue HRD68_07075 PF00719 Inorganic pyrophosphatase HRD68_07080 PF06094 Gamma-glutamyl cyclotransferase, AIG2-like HRD68_07085 PF04357 TamB, inner membrane protein subunit of TAM complex HRD68_07090 PF17243 POTRA domain TamA domain 1 HRD68_07090 PF07244 Surface antigen variable number repeat HRD68_07090 PF01103 Surface antigen HRD68_07095 PF01625 Peptide methionine sulfoxide reductase HRD68_07100 PF00571 CBS domain HRD68_07100 PF01595 Cyclin M transmembrane N-terminal domain HRD68_07100 PF03471 Transporter associated domain HRD68_07105 PF06526 Protein of unknown function (DUF1107) HRD68_07110 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) HRD68_07115 PF00459 Inositol monophosphatase family HRD68_07120 PF02872 5'-nucleotidase, C-terminal domain HRD68_07120 PF00149 Calcineurin-like phosphoesterase HRD68_07125 PF04405 Domain of Unknown function (DUF542) HRD68_07125 PF01814 Hemerythrin HHE cation binding domain HRD68_07130 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase HRD68_07130 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase HRD68_07135 PF04225 Opacity-associated protein A LysM-like domain HRD68_07135 PF08525 Opacity-associated protein A N-terminal motif HRD68_07145 PF03948 Ribosomal protein L9, C-terminal domain HRD68_07145 PF01281 Ribosomal protein L9, N-terminal domain HRD68_07150 PF01084 Ribosomal protein S18 HRD68_07155 PF00436 Single-strand binding protein family HRD68_07160 PF01250 Ribosomal protein S6 HRD68_07165 PF07338 Protein of unknown function (DUF1471) HRD68_07170 PF00326 Prolyl oligopeptidase family HRD68_07175 PF07338 Protein of unknown function (DUF1471) HRD68_07180 PF02770 Acyl-CoA dehydrogenase, middle domain HRD68_07180 PF00441 Acyl-CoA dehydrogenase, C-terminal domain HRD68_07180 PF18158 Adaptive response protein AidB N-terminal domain HRD68_07185 PF00588 SpoU rRNA Methylase family HRD68_07185 PF08032 RNA 2'-O ribose methyltransferase substrate binding HRD68_07190 PF00575 S1 RNA binding domain HRD68_07190 PF08206 Ribonuclease B OB domain HRD68_07190 PF17876 Cold shock domain HRD68_07190 PF08461 Ribonuclease R winged-helix domain HRD68_07190 PF00773 RNB domain HRD68_07195 PF02082 Transcriptional regulator HRD68_07200 PF00709 Adenylosuccinate synthetase HRD68_07205 PF09838 Uncharacterized protein conserved in bacteria (DUF2065) HRD68_07210 PF01145 SPFH domain / Band 7 family HRD68_07215 PF01145 SPFH domain / Band 7 family HRD68_07215 PF12221 Bacterial membrane protein N terminal HRD68_07220 PF16360 GTP-binding GTPase Middle Region HRD68_07220 PF01926 50S ribosome-binding GTPase HRD68_07220 PF13167 GTP-binding GTPase N-terminal HRD68_07225 PF17209 Hfq protein HRD68_07235 PF08676 MutL C terminal dimerisation domain HRD68_07235 PF01119 DNA mismatch repair protein, C-terminal domain HRD68_07240 PF01520 N-acetylmuramoyl-L-alanine amidase HRD68_07245 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE HRD68_07250 PF03853 YjeF-related protein N-terminus HRD68_07250 PF01256 Carbohydrate kinase HRD68_07255 PF08331 Domain of unknown function (DUF1730) HRD68_07275 PF00929 Exonuclease HRD68_07280 PF03193 RsgA GTPase HRD68_07285 PF02666 Phosphatidylserine decarboxylase HRD68_07290 PF00924 Mechanosensitive ion channel HRD68_07290 PF12795 Mechanosensitive ion channel porin domain HRD68_07290 PF12794 Mechanosensitive ion channel inner membrane domain 1 HRD68_07295 PF00152 tRNA synthetases class II (D, K and N) HRD68_07300 PF02910 Fumarate reductase flavoprotein C-term HRD68_07300 PF00890 FAD binding domain HRD68_07305 PF13183 4Fe-4S dicluster domain HRD68_07305 PF13085 2Fe-2S iron-sulfur cluster binding domain HRD68_07310 PF02300 Fumarate reductase subunit C HRD68_07315 PF02313 Fumarate reductase subunit D HRD68_07320 PF08212 Lipocalin-like domain HRD68_07325 PF00893 Small Multidrug Resistance protein HRD68_07330 PF08085 Entericidin EcnA/B family HRD68_07335 PF01132 Elongation factor P (EF-P) OB domain HRD68_07335 PF08207 Elongation factor P (EF-P) KOW-like domain HRD68_07335 PF09285 Elongation factor P, C-terminal HRD68_07340 PF04055 Radical SAM superfamily HRD68_07345 PF13698 Domain of unknown function (DUF4156) HRD68_07350 PF00118 TCP-1/cpn60 chaperonin family HRD68_07355 PF00166 Chaperonin 10 Kd subunit HRD68_07360 PF04186 FxsA cytoplasmic membrane protein HRD68_07365 PF00206 Lyase HRD68_07365 PF10415 Fumarase C C-terminus HRD68_07370 PF03605 Anaerobic c4-dicarboxylate membrane transporter HRD68_07375 PF03091 CutA1 divalent ion tolerance protein HRD68_07380 PF02683 Cytochrome C biogenesis protein transmembrane region HRD68_07380 PF11412 Disulphide bond corrector protein DsbC HRD68_07385 PF01568 Molydopterin dinucleotide binding domain HRD68_07385 PF00384 Molybdopterin oxidoreductase HRD68_07385 PF04879 Molybdopterin oxidoreductase Fe4S4 domain HRD68_07390 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster HRD68_07390 PF13247 4Fe-4S dicluster domain HRD68_07390 PF07992 Pyridine nucleotide-disulphide oxidoreductase HRD68_07395 PF07992 Pyridine nucleotide-disulphide oxidoreductase HRD68_07395 PF13247 4Fe-4S dicluster domain HRD68_07395 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster HRD68_07400 PF07690 Major Facilitator Superfamily HRD68_07405 PF02595 Glycerate kinase family HRD68_07410 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus HRD68_07410 PF08666 SAF domain HRD68_07415 PF13556 PucR C-terminal helix-turn-helix domain HRD68_07415 PF17853 GGDEF-like domain HRD68_07415 PF05651 Putative sugar diacid recognition HRD68_07420 PF02595 Glycerate kinase family HRD68_07425 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase HRD68_07425 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase HRD68_07430 PF03328 HpcH/HpaI aldolase/citrate lyase family HRD68_07445 PF00111 2Fe-2S iron-sulfur cluster binding domain HRD68_07445 PF00175 Oxidoreductase NAD-binding domain HRD68_07445 PF00970 Oxidoreductase FAD-binding domain HRD68_07450 PF00483 Nucleotidyl transferase HRD68_07455 PF16363 GDP-mannose 4,6 dehydratase HRD68_07460 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family HRD68_07465 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain HRD68_07465 PF00205 Thiamine pyrophosphate enzyme, central domain HRD68_07465 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain HRD68_07480 PF00535 Glycosyl transferase family 2 HRD68_07495 PF10609 NUBPL iron-transfer P-loop NTPase HRD68_07500 PF07238 PilZ domain HRD68_07500 PF00535 Glycosyl transferase family 2 HRD68_07500 PF03552 Cellulose synthase HRD68_07505 PF03170 Bacterial cellulose synthase subunit HRD68_07510 PF13181 Tetratricopeptide repeat HRD68_07510 PF05420 Cellulose synthase operon protein C C-terminus (BCSC_C) HRD68_07520 PF01270 Glycosyl hydrolases family 8 HRD68_07525 PF04055 Radical SAM superfamily HRD68_07530 PF06228 Haem utilisation ChuX/HutX HRD68_07535 PF13460 NAD(P)H-binding HRD68_07540 PF10636 Hemin uptake protein hemP HRD68_07545 PF00593 TonB dependent receptor HRD68_07545 PF07715 TonB-dependent Receptor Plug Domain HRD68_07550 PF05171 Haemin-degrading HemS.ChuX domain HRD68_07555 PF01497 Periplasmic binding protein HRD68_07560 PF01032 FecCD transport family HRD68_07565 PF00005 ABC transporter HRD68_07570 PF00392 Bacterial regulatory proteins, gntR family HRD68_07570 PF00155 Aminotransferase class I and II HRD68_07580 PF00593 TonB dependent receptor HRD68_07580 PF07715 TonB-dependent Receptor Plug Domain HRD68_07585 PF00924 Mechanosensitive ion channel HRD68_07585 PF12794 Mechanosensitive ion channel inner membrane domain 1 HRD68_07585 PF12795 Mechanosensitive ion channel porin domain HRD68_07615 PF07720 Tetratricopeptide repeat HRD68_07620 PF01312 FlhB HrpN YscU SpaS Family HRD68_07625 PF01311 Bacterial export proteins, family 1 HRD68_07630 PF01313 Bacterial export proteins, family 3 HRD68_07635 PF00813 FliP family HRD68_07655 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain HRD68_07655 PF02874 ATP synthase alpha/beta family, beta-barrel domain HRD68_07655 PF18269 T3SS EscN ATPase C-terminal domain HRD68_07665 PF00771 FHIPEP family HRD68_07670 PF07201 HrpJ-like domain HRD68_07675 PF00263 Bacterial type II and III secretion system protein HRD68_07675 PF03958 Bacterial type II/III secretion system short domain HRD68_07680 PF12833 Helix-turn-helix domain HRD68_07700 PF01514 Secretory protein of YscJ/FliF family HRD68_07720 PF01464 Transglycosylase SLT domain HRD68_07735 PF00072 Response regulator receiver domain HRD68_07735 PF00196 Bacterial regulatory proteins, luxR family HRD68_07740 PF00672 HAMP domain HRD68_07740 PF00512 His Kinase A (phospho-acceptor) domain HRD68_07740 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HRD68_07775 PF00263 Bacterial type II and III secretion system protein HRD68_07775 PF03958 Bacterial type II/III secretion system short domain HRD68_07780 PF00437 Type II/IV secretion system protein HRD68_07785 PF00482 Type II secretion system (T2SS), protein F HRD68_07790 PF07963 Prokaryotic N-terminal methylation motif HRD68_07790 PF08334 Type II secretion system (T2SS), protein G HRD68_07795 PF07963 Prokaryotic N-terminal methylation motif HRD68_07800 PF07963 Prokaryotic N-terminal methylation motif HRD68_07800 PF02501 Type II secretion system (T2SS), protein I HRD68_07805 PF11612 Type II secretion system (T2SS), protein J HRD68_07805 PF07963 Prokaryotic N-terminal methylation motif HRD68_07810 PF03934 Type II secretion system (T2SS), protein K HRD68_07825 PF06750 Bacterial Peptidase A24 N-terminal domain HRD68_07825 PF01478 Type IV leader peptidase family HRD68_07835 PF18416 N-acetylglucosamine binding protein domain 2 HRD68_07835 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading HRD68_07845 PF05193 Peptidase M16 inactive domain HRD68_07845 PF00675 Insulinase (Peptidase family M16) HRD68_07850 PF00005 ABC transporter HRD68_07850 PF06472 ABC transporter transmembrane region 2 HRD68_07855 PF07715 TonB-dependent Receptor Plug Domain HRD68_07860 PF04773 FecR protein HRD68_07860 PF16220 Domain of unknown function (DUF4880) HRD68_07865 PF08281 Sigma-70, region 4 HRD68_07865 PF04542 Sigma-70 region 2 HRD68_07880 PF01381 Helix-turn-helix HRD68_07885 PF01206 Sulfurtransferase TusA HRD68_07890 PF04143 Sulphur transport HRD68_07895 PF01312 FlhB HrpN YscU SpaS Family HRD68_07900 PF01311 Bacterial export proteins, family 1 HRD68_07905 PF01313 Bacterial export proteins, family 3 HRD68_07910 PF00813 FliP family HRD68_07930 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain HRD68_07930 PF18269 T3SS EscN ATPase C-terminal domain HRD68_07935 PF00771 FHIPEP family HRD68_07945 PF07201 HrpJ-like domain HRD68_07960 PF01514 Secretory protein of YscJ/FliF family HRD68_07980 PF12833 Helix-turn-helix domain HRD68_07980 PF14525 AraC-binding-like domain HRD68_08000 PF05802 Enterobacterial EspB protein HRD68_08005 PF04888 Secretion system effector C (SseC) like family HRD68_08015 PF03433 EspA-like secreted protein HRD68_08035 PF00263 Bacterial type II and III secretion system protein HRD68_08035 PF03958 Bacterial type II/III secretion system short domain HRD68_08045 PF00672 HAMP domain HRD68_08045 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HRD68_08045 PF00512 His Kinase A (phospho-acceptor) domain HRD68_08045 PF01627 Hpt domain HRD68_08045 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) HRD68_08045 PF00072 Response regulator receiver domain HRD68_08050 PF00072 Response regulator receiver domain HRD68_08050 PF00196 Bacterial regulatory proteins, luxR family HRD68_08055 PF00375 Sodium:dicarboxylate symporter family HRD68_08060 PF16177 Acetyl-coenzyme A synthetase N-terminus HRD68_08060 PF00501 AMP-binding enzyme HRD68_08060 PF13193 AMP-binding enzyme C-terminal domain HRD68_08065 PF04341 Protein of unknown function, DUF485 HRD68_08070 PF00474 Sodium:solute symporter family HRD68_08110 PF01808 AICARFT/IMPCHase bienzyme HRD68_08110 PF02142 MGS-like domain HRD68_08115 PF02843 Phosphoribosylglycinamide synthetase, C domain HRD68_08115 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain HRD68_08115 PF02844 Phosphoribosylglycinamide synthetase, N domain HRD68_08120 PF07356 Protein of unknown function (DUF1481) HRD68_08125 PF00216 Bacterial DNA-binding protein HRD68_08130 PF04222 Protein of unknown function (DUF416) HRD68_08135 PF04493 Endonuclease V HRD68_08140 PF01208 Uroporphyrinogen decarboxylase (URO-D) HRD68_08145 PF09297 NADH pyrophosphatase zinc ribbon domain HRD68_08145 PF00293 NUDIX domain HRD68_08150 PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ HRD68_08155 PF13667 ThiC-associated domain HRD68_08155 PF01964 Radical SAM ThiC family HRD68_08160 PF02581 Thiamine monophosphate synthase HRD68_08165 PF00899 ThiF family HRD68_08170 PF02597 ThiS family HRD68_08175 PF05690 Thiazole biosynthesis protein ThiG HRD68_08180 PF06968 Biotin and Thiamin Synthesis associated domain HRD68_08180 PF04055 Radical SAM superfamily HRD68_08185 PF04997 RNA polymerase Rpb1, domain 1 HRD68_08185 PF00623 RNA polymerase Rpb1, domain 2 HRD68_08185 PF04983 RNA polymerase Rpb1, domain 3 HRD68_08185 PF05000 RNA polymerase Rpb1, domain 4 HRD68_08185 PF04998 RNA polymerase Rpb1, domain 5 HRD68_08190 PF04565 RNA polymerase Rpb2, domain 3 HRD68_08190 PF10385 RNA polymerase beta subunit external 1 domain HRD68_08190 PF04560 RNA polymerase Rpb2, domain 7 HRD68_08190 PF04561 RNA polymerase Rpb2, domain 2 HRD68_08190 PF00562 RNA polymerase Rpb2, domain 6 HRD68_08190 PF04563 RNA polymerase beta subunit HRD68_08195 PF16320 Ribosomal protein L7/L12 dimerisation domain HRD68_08195 PF00542 Ribosomal protein L7/L12 C-terminal domain HRD68_08200 PF00466 Ribosomal protein L10 HRD68_08205 PF00687 Ribosomal protein L1p/L10e family HRD68_08210 PF00298 Ribosomal protein L11, RNA binding domain HRD68_08210 PF03946 Ribosomal protein L11, N-terminal domain HRD68_08215 PF00467 KOW motif HRD68_08215 PF02357 Transcription termination factor nusG HRD68_08220 PF00584 SecE/Sec61-gamma subunits of protein translocation complex HRD68_08225 PF03143 Elongation factor Tu C-terminal domain HRD68_08225 PF03144 Elongation factor Tu domain 2 HRD68_08225 PF00009 Elongation factor Tu GTP binding domain HRD68_08250 PF13673 Acetyltransferase (GNAT) domain HRD68_08255 PF00485 Phosphoribulokinase / Uridine kinase family HRD68_08260 PF02237 Biotin protein ligase C terminal domain HRD68_08260 PF03099 Biotin/lipoate A/B protein ligase family HRD68_08260 PF08279 HTH domain HRD68_08265 PF01565 FAD binding domain HRD68_08265 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain HRD68_08290 PF12724 Flavodoxin domain HRD68_08295 PF02386 Cation transport protein HRD68_08300 PF01205 Uncharacterized protein family UPF0029 HRD68_08300 PF09186 Domain of unknown function (DUF1949) HRD68_08305 PF00557 Metallopeptidase family M24 HRD68_08310 PF00378 Enoyl-CoA hydratase/isomerase HRD68_08310 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain HRD68_08310 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain HRD68_08315 PF02803 Thiolase, C-terminal domain HRD68_08315 PF00108 Thiolase, N-terminal domain HRD68_08320 PF00970 Oxidoreductase FAD-binding domain HRD68_08320 PF00175 Oxidoreductase NAD-binding domain HRD68_08325 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase HRD68_08330 PF02357 Transcription termination factor nusG HRD68_08335 PF00490 Delta-aminolevulinic acid dehydratase HRD68_08340 PF01026 TatD related DNase HRD68_08345 PF00902 Sec-independent protein translocase protein (TatC) HRD68_08355 PF02416 mttA/Hcf106 family HRD68_08360 PF03109 ABC1 family HRD68_08365 PF02036 SCP-2 sterol transfer family HRD68_08370 PF01209 ubiE/COQ5 methyltransferase family HRD68_08375 PF02646 RmuC family HRD68_08380 PF09335 SNARE associated Golgi protein HRD68_08385 PF13722 5TM C-terminal transporter carbon starvation CstA HRD68_08385 PF02554 Carbon starvation protein CstA HRD68_08395 PF01048 Phosphorylase superfamily HRD68_08400 PF01738 Dienelactone hydrolase family HRD68_08405 PF01717 Cobalamin-independent synthase, Catalytic domain HRD68_08405 PF08267 Cobalamin-independent synthase, N-terminal domain HRD68_08410 PF03466 LysR substrate binding domain HRD68_08410 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HRD68_08415 PF00892 EamA-like transporter family HRD68_08420 PF03547 Membrane transport protein HRD68_08425 PF03009 Glycerophosphoryl diester phosphodiesterase family HRD68_08430 PF17912 MalK OB fold domain HRD68_08430 PF00005 ABC transporter HRD68_08435 PF00528 Binding-protein-dependent transport system inner membrane component HRD68_08440 PF00528 Binding-protein-dependent transport system inner membrane component HRD68_08445 PF13416 Bacterial extracellular solute-binding protein HRD68_08480 PF00005 ABC transporter HRD68_08485 PF00005 ABC transporter HRD68_08485 PF12399 Branched-chain amino acid ATP-binding cassette transporter HRD68_08490 PF11862 Domain of unknown function (DUF3382) HRD68_08490 PF02653 Branched-chain amino acid transport system / permease component HRD68_08495 PF02653 Branched-chain amino acid transport system / permease component HRD68_08500 PF13458 Periplasmic binding protein HRD68_08505 PF12568 Acetyltransferase (GNAT) domain, PanZ HRD68_08510 PF00140 Sigma-70 factor, region 1.2 HRD68_08510 PF04542 Sigma-70 region 2 HRD68_08510 PF04545 Sigma-70, region 4 HRD68_08515 PF02687 FtsX-like permease family HRD68_08515 PF18075 FtsX extracellular domain HRD68_08520 PF00005 ABC transporter HRD68_08525 PF02881 SRP54-type protein, helical bundle domain HRD68_08525 PF00448 SRP54-type protein, GTPase domain HRD68_08525 PF02881 SRP54-type protein, helical bundle domain HRD68_08525 PF00448 SRP54-type protein, GTPase domain HRD68_08535 PF06611 Protein of unknown function (DUF1145) HRD68_08550 PF07947 YhhN family HRD68_08555 PF00403 Heavy-metal-associated domain HRD68_08560 PF01206 Sulfurtransferase TusA HRD68_08565 PF02592 Putative vitamin uptake transporter HRD68_08570 PF08786 DcrB HRD68_08575 PF13183 4Fe-4S dicluster domain HRD68_08575 PF02754 Cysteine-rich domain HRD68_08580 PF00890 FAD binding domain HRD68_08585 PF01266 FAD dependent oxidoreductase HRD68_08585 PF04324 BFD-like [2Fe-2S] binding domain HRD68_08590 PF07690 Major Facilitator Superfamily HRD68_08595 PF03009 Glycerophosphoryl diester phosphodiesterase family HRD68_08605 PF12146 Serine aminopeptidase, S33 HRD68_08610 PF01810 LysE type translocator HRD68_08615 PF01810 LysE type translocator HRD68_08620 PF16124 RecQ zinc-binding HRD68_08620 PF00570 HRDC domain HRD68_08620 PF00271 Helicase conserved C-terminal domain HRD68_08620 PF00270 DEAD/DEAH box helicase HRD68_08620 PF09382 RQC domain HRD68_08625 PF02253 Phospholipase A1 HRD68_08630 PF03061 Thioesterase superfamily HRD68_08635 PF00892 EamA-like transporter family HRD68_08640 PF01544 CorA-like Mg2+ transporter protein HRD68_08645 PF09370 Phosphoenolpyruvate hydrolase-like HRD68_08660 PF00580 UvrD/REP helicase N-terminal domain HRD68_08660 PF13361 UvrD-like helicase C-terminal domain HRD68_08665 PF13419 Haloacid dehalogenase-like hydrolase HRD68_08670 PF00589 Phage integrase family HRD68_08670 PF02899 Phage integrase, N-terminal SAM-like domain HRD68_08675 PF04340 Protein of unknown function, DUF484 HRD68_08680 PF01678 Diaminopimelate epimerase HRD68_08685 PF13627 Prokaryotic lipoprotein-attachment site HRD68_08690 PF01491 Frataxin-like domain HRD68_08695 PF12633 Adenylate cyclase NT domain HRD68_08695 PF01295 Adenylate cyclase, class-I HRD68_08700 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain HRD68_08700 PF03900 Porphobilinogen deaminase, C-terminal domain HRD68_08705 PF02602 Uroporphyrinogen-III synthase HemD HRD68_08710 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase HRD68_08715 PF07219 HemY protein N-terminus HRD68_08715 PF07719 Tetratricopeptide repeat HRD68_08740 PF00324 Amino acid permease HRD68_08745 PF03808 Glycosyl transferase WecB/TagA/CpsF family HRD68_08750 PF06899 WzyE protein, O-antigen assembly polymerase HRD68_08755 PF07429 4-alpha-L-fucosyltransferase glycosyl transferase group 56 HRD68_08760 PF01943 Polysaccharide biosynthesis protein HRD68_08765 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family HRD68_08775 PF00483 Nucleotidyl transferase HRD68_08780 PF16363 GDP-mannose 4,6 dehydratase HRD68_08785 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain HRD68_08785 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain HRD68_08785 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain HRD68_08790 PF02350 UDP-N-acetylglucosamine 2-epimerase HRD68_08795 PF02706 Chain length determinant protein HRD68_08800 PF00953 Glycosyl transferase family 4 HRD68_08805 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain HRD68_08805 PF07497 Rho termination factor, RNA-binding domain HRD68_08805 PF07498 Rho termination factor, N-terminal domain HRD68_08810 PF00085 Thioredoxin HRD68_08815 PF00270 DEAD/DEAH box helicase HRD68_08815 PF00271 Helicase conserved C-terminal domain HRD68_08820 PF02541 Ppx/GppA phosphatase family HRD68_08825 PF00295 Glycosyl hydrolases family 28 HRD68_08830 PF00580 UvrD/REP helicase N-terminal domain HRD68_08830 PF13361 UvrD-like helicase C-terminal domain HRD68_08845 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain HRD68_08845 PF02753 Pili assembly chaperone PapD, C-terminal domain HRD68_08850 PF13953 PapC C-terminal domain HRD68_08850 PF00577 Outer membrane usher protein HRD68_08850 PF13954 PapC N-terminal domain HRD68_08860 PF02753 Pili assembly chaperone PapD, C-terminal domain HRD68_08860 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain HRD68_08865 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain HRD68_08865 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain HRD68_08870 PF03466 LysR substrate binding domain HRD68_08870 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HRD68_08880 PF00291 Pyridoxal-phosphate dependent enzyme HRD68_08880 PF00585 C-terminal regulatory domain of Threonine dehydratase HRD68_08885 PF00920 Dehydratase family HRD68_08890 PF01063 Amino-transferase class IV HRD68_08900 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain HRD68_08900 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain HRD68_08900 PF00205 Thiamine pyrophosphate enzyme, central domain HRD68_08905 PF08046 IlvGEDA operon leader peptide HRD68_08910 PF13335 Magnesium chelatase, subunit ChlI C-terminal HRD68_08910 PF01078 Magnesium chelatase, subunit ChlI HRD68_08915 PF04219 Protein of unknown function, DUF HRD68_08920 PF03466 LysR substrate binding domain HRD68_08920 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HRD68_08925 PF02653 Branched-chain amino acid transport system / permease component HRD68_08930 PF02653 Branched-chain amino acid transport system / permease component HRD68_08935 PF00005 ABC transporter HRD68_08940 PF13407 Periplasmic binding protein domain HRD68_08980 PF01177 Asp/Glu/Hydantoin racemase HRD68_08985 PF07715 TonB-dependent Receptor Plug Domain HRD68_08985 PF00593 TonB dependent receptor HRD68_08990 PF05958 tRNA (Uracil-5-)-methyltransferase HRD68_08995 PF07226 Protein of unknown function (DUF1422) HRD68_09000 PF00440 Bacterial regulatory proteins, tetR family HRD68_09005 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain HRD68_09005 PF07992 Pyridine nucleotide-disulphide oxidoreductase HRD68_09010 PF03466 LysR substrate binding domain HRD68_09010 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HRD68_09015 PF08534 Redoxin HRD68_09015 PF00462 Glutaredoxin HRD68_09020 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain HRD68_09020 PF07992 Pyridine nucleotide-disulphide oxidoreductase HRD68_09030 PF00529 HlyD membrane-fusion protein of T1SS HRD68_09035 PF00664 ABC transporter transmembrane region HRD68_09035 PF00005 ABC transporter HRD68_09045 PF07715 TonB-dependent Receptor Plug Domain HRD68_09045 PF00593 TonB dependent receptor HRD68_09050 PF00206 Lyase HRD68_09050 PF14698 Argininosuccinate lyase C-terminal HRD68_09055 PF00696 Amino acid kinase family HRD68_09060 PF01118 Semialdehyde dehydrogenase, NAD binding domain HRD68_09060 PF02774 Semialdehyde dehydrogenase, dimerisation domain HRD68_09065 PF01546 Peptidase family M20/M25/M40 HRD68_09065 PF07687 Peptidase dimerisation domain HRD68_09070 PF00311 Phosphoenolpyruvate carboxylase HRD68_09075 PF00175 Oxidoreductase NAD-binding domain HRD68_09075 PF00970 Oxidoreductase FAD-binding domain HRD68_09080 PF07690 Major Facilitator Superfamily HRD68_09085 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded HRD68_09090 PF00370 FGGY family of carbohydrate kinases, N-terminal domain HRD68_09090 PF02782 FGGY family of carbohydrate kinases, C-terminal domain HRD68_09095 PF00230 Major intrinsic protein HRD68_09100 PF06005 Cell division protein ZapB HRD68_09105 PF03737 Aldolase/RraA HRD68_09110 PF01040 UbiA prenyltransferase family HRD68_09115 PF07724 AAA domain (Cdc48 subfamily) HRD68_09115 PF10431 C-terminal, D2-small domain, of ClpB protein HRD68_09115 PF00004 ATPase family associated with various cellular activities (AAA) HRD68_09120 PF00227 Proteasome subunit HRD68_09125 PF05036 Sporulation related domain HRD68_09130 PF00356 Bacterial regulatory proteins, lacI family HRD68_09135 PF00271 Helicase conserved C-terminal domain HRD68_09135 PF00270 DEAD/DEAH box helicase HRD68_09135 PF18319 PriA DNA helicase Cys-rich region (CRR) domain HRD68_09135 PF17764 3′ DNA-binding domain (3′BD) HRD68_09135 PF18074 Primosomal protein N C-terminal domain HRD68_09140 PF01197 Ribosomal protein L31 HRD68_09145 PF01340 Met Apo-repressor, MetJ HRD68_09150 PF01053 Cys/Met metabolism PLP-dependent enzyme HRD68_09155 PF03447 Homoserine dehydrogenase, NAD binding domain HRD68_09155 PF00696 Amino acid kinase family HRD68_09155 PF00742 Homoserine dehydrogenase HRD68_09160 PF02219 Methylenetetrahydrofolate reductase HRD68_09165 PF05656 Protein of unknown function (DUF805) HRD68_09170 PF07305 Protein of unknown function (DUF1454) HRD68_09175 PF00121 Triosephosphate isomerase HRD68_09190 PF00365 Phosphofructokinase HRD68_09195 PF01545 Cation efflux family HRD68_09195 PF16916 Dimerisation domain of Zinc Transporter HRD68_09200 PF07813 LTXXQ motif family protein HRD68_09205 PF00486 Transcriptional regulatory protein, C terminal HRD68_09205 PF00072 Response regulator receiver domain HRD68_09210 PF00512 His Kinase A (phospho-acceptor) domain HRD68_09210 PF00672 HAMP domain HRD68_09210 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HRD68_09210 PF16527 Two-component sensor protein CpxA, periplasmic domain HRD68_09215 PF02805 Metal binding domain of Ada HRD68_09215 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain HRD68_09215 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain HRD68_09215 PF12833 Helix-turn-helix domain HRD68_09220 PF00588 SpoU rRNA Methylase family HRD68_09225 PF00132 Bacterial transferase hexapeptide (six repeats) HRD68_09225 PF06426 Serine acetyltransferase, N-terminal HRD68_09230 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus HRD68_09230 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus HRD68_09235 PF02556 Preprotein translocase subunit SecB HRD68_09240 PF00462 Glutaredoxin HRD68_09245 PF00581 Rhodanese-like domain HRD68_09250 PF01676 Metalloenzyme superfamily HRD68_09250 PF06415 BPG-independent PGAM N-terminus (iPGM_N) HRD68_09255 PF01551 Peptidase family M23 HRD68_09260 PF04748 Divergent polysaccharide deacetylase HRD68_09265 PF08240 Alcohol dehydrogenase GroES-like domain HRD68_09265 PF00107 Zinc-binding dehydrogenase HRD68_09270 PF00155 Aminotransferase class I and II HRD68_09275 PF01370 NAD dependent epimerase/dehydratase family HRD68_09280 PF01075 Glycosyltransferase family 9 (heptosyltransferase) HRD68_09285 PF01075 Glycosyltransferase family 9 (heptosyltransferase) HRD68_09290 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) HRD68_09295 PF00535 Glycosyl transferase family 2 HRD68_09300 PF01467 Cytidylyltransferase-like HRD68_09305 PF06827 Zinc finger found in FPG and IleRS HRD68_09305 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain HRD68_09305 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain HRD68_09310 PF00471 Ribosomal protein L33 HRD68_09315 PF00830 Ribosomal L28 family HRD68_09320 PF04002 RadC-like JAB domain HRD68_09325 PF04127 DNA / pantothenate metabolism flavoprotein HRD68_09325 PF02441 Flavoprotein HRD68_09330 PF00692 dUTPase HRD68_09335 PF00440 Bacterial regulatory proteins, tetR family HRD68_09340 PF06917 Periplasmic pectate lyase HRD68_09345 PF06178 Oligogalacturonate-specific porin protein (KdgM) HRD68_09355 PF00990 Diguanylate cyclase, GGDEF domain HRD68_09355 PF00672 HAMP domain HRD68_09355 PF17154 Gammaproteobacterial periplasmic sensor domain HRD68_09355 PF00563 EAL domain HRD68_09360 PF08352 Oligopeptide/dipeptide transporter, C-terminal region HRD68_09360 PF00005 ABC transporter HRD68_09365 PF08352 Oligopeptide/dipeptide transporter, C-terminal region HRD68_09365 PF00005 ABC transporter HRD68_09370 PF12911 N-terminal TM domain of oligopeptide transport permease C HRD68_09370 PF00528 Binding-protein-dependent transport system inner membrane component HRD68_09375 PF00528 Binding-protein-dependent transport system inner membrane component HRD68_09380 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle HRD68_09385 PF05860 haemagglutination activity domain HRD68_09385 PF13332 Hemagglutinin repeat HRD68_09390 PF17287 POTRA domain HRD68_09390 PF08479 POTRA domain, ShlB-type HRD68_09390 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB HRD68_09400 PF07690 Major Facilitator Superfamily HRD68_09405 PF07730 Histidine kinase HRD68_09405 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HRD68_09405 PF05231 MASE1 HRD68_09410 PF00196 Bacterial regulatory proteins, luxR family HRD68_09410 PF00072 Response regulator receiver domain HRD68_09415 PF00884 Sulfatase HRD68_09415 PF08019 Phosphoethanolamine transferase EptA/EptB HRD68_09420 PF02566 OsmC-like protein HRD68_09425 PF12146 Serine aminopeptidase, S33 HRD68_09430 PF00324 Amino acid permease HRD68_09435 PF00221 Aromatic amino acid lyase HRD68_09440 PF17391 Urocanase N-terminal domain HRD68_09440 PF17392 Urocanase C-terminal domain HRD68_09440 PF01175 Urocanase Rossmann-like domain HRD68_09445 PF13426 PAS domain HRD68_09445 PF00563 EAL domain HRD68_09445 PF00990 Diguanylate cyclase, GGDEF domain HRD68_09450 PF00378 Enoyl-CoA hydratase/isomerase HRD68_09455 PF07670 Nucleoside recognition HRD68_09455 PF07662 Na+ dependent nucleoside transporter C-terminus HRD68_09455 PF01773 Na+ dependent nucleoside transporter N-terminus HRD68_09465 PF03458 UPF0126 domain HRD68_09470 PF03120 NAD-dependent DNA ligase OB-fold domain HRD68_09470 PF01653 NAD-dependent DNA ligase adenylation domain HRD68_09475 PF00625 Guanylate kinase HRD68_09480 PF01192 RNA polymerase Rpb6 HRD68_09485 PF02824 TGS domain HRD68_09485 PF04607 Region found in RelA / SpoT proteins HRD68_09485 PF13291 ACT domain HRD68_09490 PF12105 SpoU, rRNA methylase, C-terminal HRD68_09490 PF00588 SpoU rRNA Methylase family HRD68_09495 PF00270 DEAD/DEAH box helicase HRD68_09495 PF00271 Helicase conserved C-terminal domain HRD68_09495 PF17191 RecG wedge domain HRD68_09500 PF03616 Sodium/glutamate symporter HRD68_09505 PF00860 Permease family HRD68_09510 PF05170 AsmA family HRD68_09525 PF06490 Flagellar regulatory protein FleQ HRD68_09525 PF02954 Bacterial regulatory protein, Fis family HRD68_09525 PF00158 Sigma-54 interaction domain HRD68_09530 PF09500 Putative thioesterase (yiiD_Cterm) HRD68_09530 PF00583 Acetyltransferase (GNAT) family HRD68_09535 PF02580 D-Tyr-tRNA(Tyr) deacylase HRD68_09540 PF03631 Virulence factor BrkB HRD68_09545 PF13419 Haloacid dehalogenase-like hydrolase HRD68_09555 PF03951 Glutamine synthetase, beta-Grasp domain HRD68_09555 PF00120 Glutamine synthetase, catalytic domain HRD68_09560 PF00512 His Kinase A (phospho-acceptor) domain HRD68_09560 PF00989 PAS fold HRD68_09560 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HRD68_09565 PF00072 Response regulator receiver domain HRD68_09565 PF00158 Sigma-54 interaction domain HRD68_09565 PF02954 Bacterial regulatory protein, Fis family HRD68_09570 PF06969 HemN C-terminal domain HRD68_09570 PF04055 Radical SAM superfamily HRD68_09575 PF04220 Der GTPase activator (YihI) HRD68_09580 PF01926 50S ribosome-binding GTPase HRD68_09585 PF01367 5'-3' exonuclease, C-terminal SAM fold HRD68_09585 PF00476 DNA polymerase family A HRD68_09585 PF01612 3'-5' exonuclease HRD68_09585 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain HRD68_09590 PF01323 DSBA-like thioredoxin domain HRD68_09595 PF01636 Phosphotransferase enzyme family HRD68_09600 PF06288 Protein of unknown function (DUF1040) HRD68_09605 PF12804 MobA-like NTP transferase domain HRD68_09610 PF03205 Molybdopterin guanine dinucleotide synthesis protein B HRD68_09635 PF00392 Bacterial regulatory proteins, gntR family HRD68_09635 PF07729 FCD domain HRD68_09640 PF07690 Major Facilitator Superfamily HRD68_09645 PF00356 Bacterial regulatory proteins, lacI family HRD68_09650 PF00294 pfkB family carbohydrate kinase HRD68_09655 PF13407 Periplasmic binding protein domain HRD68_09660 PF02653 Branched-chain amino acid transport system / permease component HRD68_09665 PF00005 ABC transporter HRD68_09670 PF05025 RbsD / FucU transport protein family HRD68_09675 PF02705 K+ potassium transporter HRD68_09680 PF17868 AAA lid domain HRD68_09680 PF12592 Protein of unknown function (DUF3763) HRD68_09680 PF07728 AAA domain (dynein-related subfamily) HRD68_09685 PF05762 VWA domain containing CoxE-like protein HRD68_09695 PF03590 Aspartate-ammonia ligase HRD68_09700 PF01037 Lrp/AsnC ligand binding domain HRD68_09705 PF00258 Flavodoxin HRD68_09710 PF01134 Glucose inhibited division protein A HRD68_09710 PF13932 GidA associated domain HRD68_09715 PF02527 rRNA small subunit methyltransferase G HRD68_09720 PF03899 ATP synthase I chain HRD68_09725 PF00119 ATP synthase A chain HRD68_09730 PF00137 ATP synthase subunit C HRD68_09735 PF00430 ATP synthase B/B' CF(0) HRD68_09740 PF00213 ATP synthase delta (OSCP) subunit HRD68_09745 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain HRD68_09745 PF00306 ATP synthase alpha/beta chain, C terminal domain HRD68_09745 PF02874 ATP synthase alpha/beta family, beta-barrel domain HRD68_09750 PF00231 ATP synthase HRD68_09755 PF02874 ATP synthase alpha/beta family, beta-barrel domain HRD68_09755 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain HRD68_09760 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain HRD68_09760 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain HRD68_09765 PF12804 MobA-like NTP transferase domain HRD68_09765 PF00132 Bacterial transferase hexapeptide (six repeats) HRD68_09770 PF01380 SIS domain HRD68_09775 PF12849 PBP superfamily domain HRD68_09780 PF00528 Binding-protein-dependent transport system inner membrane component HRD68_09785 PF00528 Binding-protein-dependent transport system inner membrane component HRD68_09790 PF00005 ABC transporter HRD68_09795 PF01895 PhoU domain HRD68_09800 PF00497 Bacterial extracellular solute-binding proteins, family 3 HRD68_09805 PF00528 Binding-protein-dependent transport system inner membrane component HRD68_09810 PF00528 Binding-protein-dependent transport system inner membrane component HRD68_09815 PF13419 Haloacid dehalogenase-like hydrolase HRD68_09820 PF00860 Permease family HRD68_09830 PF00072 Response regulator receiver domain HRD68_09830 PF00196 Bacterial regulatory proteins, luxR family HRD68_09835 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HRD68_09835 PF00512 His Kinase A (phospho-acceptor) domain HRD68_09835 PF00989 PAS fold HRD68_09840 PF03358 NADPH-dependent FMN reductase HRD68_09845 PF02203 Tar ligand binding domain homologue HRD68_09845 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HRD68_09845 PF00672 HAMP domain HRD68_09850 PF00528 Binding-protein-dependent transport system inner membrane component HRD68_09855 PF00005 ABC transporter HRD68_09855 PF09383 NIL domain HRD68_09875 PF01878 EVE domain HRD68_09885 PF07055 Enoyl reductase FAD binding domain HRD68_09885 PF12241 Trans-2-enoyl-CoA reductase catalytic region HRD68_09885 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase HRD68_09890 PF10396 GTP-binding protein TrmE N-terminus HRD68_09890 PF01926 50S ribosome-binding GTPase HRD68_09890 PF12631 MnmE helical domain HRD68_09895 PF02096 60Kd inner membrane protein HRD68_09895 PF14849 YidC periplasmic domain HRD68_09900 PF01809 Putative membrane protein insertion efficiency factor HRD68_09905 PF00825 Ribonuclease P HRD68_09910 PF00468 Ribosomal protein L34 HRD68_09915 PF11638 DnaA N-terminal domain HRD68_09915 PF00308 Bacterial dnaA protein HRD68_09915 PF08299 Bacterial dnaA protein helix-turn-helix HRD68_09920 PF02768 DNA polymerase III beta subunit, C-terminal domain HRD68_09920 PF00712 DNA polymerase III beta subunit, N-terminal domain HRD68_09920 PF02767 DNA polymerase III beta subunit, central domain HRD68_09925 PF02463 RecF/RecN/SMC N terminal domain HRD68_09930 PF00986 DNA gyrase B subunit, carboxyl terminus HRD68_09930 PF00204 DNA gyrase B HRD68_09930 PF18053 DNA gyrase B subunit insert domain HRD68_09930 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HRD68_09930 PF01751 Toprim domain HRD68_09940 PF02423 Ornithine cyclodeaminase/mu-crystallin family HRD68_09945 PF00291 Pyridoxal-phosphate dependent enzyme HRD68_09950 PF13309 HTH domain HRD68_09950 PF08348 YheO-like PAS domain HRD68_09955 PF12566 Protein of unknown function (DUF3748) HRD68_09955 PF07676 WD40-like Beta Propeller Repeat HRD68_09960 PF07119 Protein of unknown function (DUF1375) HRD68_09965 PF00011 Hsp20/alpha crystallin family HRD68_09970 PF00011 Hsp20/alpha crystallin family HRD68_09975 PF06826 Predicted Permease Membrane Region HRD68_09975 PF02080 TrkA-C domain HRD68_09980 PF00155 Aminotransferase class I and II HRD68_09985 PF00128 Alpha amylase, catalytic domain HRD68_09990 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain HRD68_09990 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain HRD68_09995 PF07690 Major Facilitator Superfamily HRD68_10005 PF00691 OmpA family HRD68_10005 PF13488 Glycine zipper HRD68_10020 PF03352 Methyladenine glycosylase HRD68_10030 PF02091 Glycyl-tRNA synthetase alpha subunit HRD68_10035 PF02092 Glycyl-tRNA synthetase beta subunit HRD68_10035 PF05746 DALR anticodon binding domain HRD68_10040 PF11254 Protein of unknown function (DUF3053) HRD68_10050 PF00009 Elongation factor Tu GTP binding domain HRD68_10050 PF03144 Elongation factor Tu domain 2 HRD68_10050 PF09106 Elongation factor SelB, winged helix HRD68_10050 PF09107 Elongation factor SelB, winged helix HRD68_10055 PF12390 Selenocysteine synthase N terminal HRD68_10055 PF03841 L-seryl-tRNA selenium transferase HRD68_10060 PF04216 Protein involved in formate dehydrogenase formation HRD68_10065 PF01292 Prokaryotic cytochrome b561 HRD68_10070 PF09163 Formate dehydrogenase N, transmembrane HRD68_10070 PF13247 4Fe-4S dicluster domain HRD68_10080 PF02634 FdhD/NarQ family HRD68_10085 PF02777 Iron/manganese superoxide dismutases, C-terminal domain HRD68_10085 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain HRD68_10090 PF02203 Tar ligand binding domain homologue HRD68_10090 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HRD68_10090 PF00672 HAMP domain HRD68_10095 PF03475 3-alpha domain HRD68_10095 PF03473 MOSC domain HRD68_10105 PF10928 Protein of unknown function (DUF2810) HRD68_10110 PF00392 Bacterial regulatory proteins, gntR family HRD68_10110 PF00155 Aminotransferase class I and II HRD68_10120 PF05068 Mannitol repressor HRD68_10125 PF08125 Mannitol dehydrogenase C-terminal domain HRD68_10125 PF01232 Mannitol dehydrogenase Rossmann domain HRD68_10130 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit HRD68_10130 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 HRD68_10130 PF02378 Phosphotransferase system, EIIC HRD68_10135 PF01757 Acyltransferase family HRD68_10140 PF12833 Helix-turn-helix domain HRD68_10140 PF01965 DJ-1/PfpI family HRD68_10145 PF00857 Isochorismatase family HRD68_10150 PF00419 Fimbrial protein HRD68_10155 PF00577 Outer membrane usher protein HRD68_10155 PF13954 PapC N-terminal domain HRD68_10155 PF13953 PapC C-terminal domain HRD68_10160 PF02753 Pili assembly chaperone PapD, C-terminal domain HRD68_10160 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain HRD68_10170 PF02782 FGGY family of carbohydrate kinases, C-terminal domain HRD68_10170 PF00370 FGGY family of carbohydrate kinases, N-terminal domain HRD68_10180 PF13407 Periplasmic binding protein domain HRD68_10185 PF00005 ABC transporter HRD68_10190 PF02653 Branched-chain amino acid transport system / permease component HRD68_10195 PF12833 Helix-turn-helix domain HRD68_10205 PF13356 Arm DNA-binding domain HRD68_10205 PF14659 Phage integrase, N-terminal SAM-like domain HRD68_10205 PF00589 Phage integrase family HRD68_10215 PF01966 HD domain HRD68_10215 PF13286 Phosphohydrolase-associated domain HRD68_10235 PF06508 Queuosine biosynthesis protein QueC HRD68_10285 PF06067 Domain of unknown function (DUF932) HRD68_10290 PF04002 RadC-like JAB domain HRD68_10295 PF06154 CbeA_antitoxin, type IV, cytoskeleton bundling-enhancing factor A HRD68_10300 PF06755 CbtA_toxin of type IV toxin-antitoxin system HRD68_10310 PF04829 Pre-toxin domain with VENN motif HRD68_10310 PF15605 Bacterial toxin 28 HRD68_10310 PF05860 haemagglutination activity domain HRD68_10310 PF13332 Hemagglutinin repeat HRD68_10315 PF17287 POTRA domain HRD68_10315 PF08479 POTRA domain, ShlB-type HRD68_10315 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB HRD68_10335 PF13454 FAD-NAD(P)-binding HRD68_10355 PF03755 YicC-like family, N-terminal region HRD68_10355 PF08340 Domain of unknown function (DUF1732) HRD68_10360 PF01138 3' exoribonuclease family, domain 1 HRD68_10360 PF03725 3' exoribonuclease family, domain 2 HRD68_10365 PF00156 Phosphoribosyl transferase domain HRD68_10370 PF00375 Sodium:dicarboxylate symporter family HRD68_10375 PF00675 Insulinase (Peptidase family M16) HRD68_10375 PF05193 Peptidase M16 inactive domain HRD68_10380 PF00294 pfkB family carbohydrate kinase HRD68_10385 PF01361 Tautomerase enzyme HRD68_10390 PF00563 EAL domain HRD68_10395 PF05170 AsmA family HRD68_10400 PF02611 CDP-diacylglycerol pyrophosphatase HRD68_10405 PF03631 Virulence factor BrkB HRD68_10410 PF07992 Pyridine nucleotide-disulphide oxidoreductase HRD68_10410 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain HRD68_10415 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ HRD68_10425 PF01432 Peptidase family M3 HRD68_10430 PF04445 Putative SAM-dependent methyltransferase HRD68_10435 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) HRD68_10435 PF08548 Peptidase M10 serralysin C terminal HRD68_10435 PF00413 Matrixin HRD68_10440 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain HRD68_10440 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase HRD68_10445 PF00582 Universal stress protein family HRD68_10450 PF10625 Universal stress protein B (UspB) HRD68_10455 PF01384 Phosphate transporter family HRD68_10465 PF00072 Response regulator receiver domain HRD68_10465 PF00196 Bacterial regulatory proteins, luxR family HRD68_10470 PF00196 Bacterial regulatory proteins, luxR family HRD68_10470 PF00072 Response regulator receiver domain HRD68_10480 PF03466 LysR substrate binding domain HRD68_10480 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HRD68_10485 PF07690 Major Facilitator Superfamily HRD68_10495 PF00083 Sugar (and other) transporter HRD68_10500 PF00171 Aldehyde dehydrogenase family HRD68_10505 PF04962 KduI/IolB family HRD68_10515 PF00294 pfkB family carbohydrate kinase HRD68_10520 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain HRD68_10520 PF00205 Thiamine pyrophosphate enzyme, central domain HRD68_10520 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain HRD68_10525 PF01408 Oxidoreductase family, NAD-binding Rossmann fold HRD68_10525 PF02894 Oxidoreductase family, C-terminal alpha/beta domain HRD68_10530 PF01261 Xylose isomerase-like TIM barrel HRD68_10535 PF00583 Acetyltransferase (GNAT) family HRD68_10540 PF02678 Pirin HRD68_10540 PF17954 Quercetinase C-terminal cupin domain HRD68_10545 PF00356 Bacterial regulatory proteins, lacI family HRD68_10545 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family HRD68_10550 PF02447 GntP family permease HRD68_10555 PF01202 Shikimate kinase HRD68_10560 PF01914 MarC family integral membrane protein HRD68_10565 PF02774 Semialdehyde dehydrogenase, dimerisation domain HRD68_10565 PF01118 Semialdehyde dehydrogenase, NAD binding domain HRD68_10570 PF06580 Histidine kinase HRD68_10570 PF07694 5TMR of 5TMR-LYT HRD68_10575 PF00128 Alpha amylase, catalytic domain HRD68_10575 PF02806 Alpha amylase, C-terminal all-beta domain HRD68_10575 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) HRD68_10580 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) HRD68_10580 PF18390 Glycogen debranching enzyme C-terminal domain HRD68_10580 PF00128 Alpha amylase, catalytic domain HRD68_10585 PF00483 Nucleotidyl transferase HRD68_10590 PF08323 Starch synthase catalytic domain HRD68_10590 PF00534 Glycosyl transferases group 1 HRD68_10595 PF00343 Carbohydrate phosphorylase HRD68_10600 PF16901 C-terminal domain of alpha-glycerophosphate oxidase HRD68_10600 PF01266 FAD dependent oxidoreductase HRD68_10605 PF00455 DeoR C terminal sensor domain HRD68_10605 PF08220 DeoR-like helix-turn-helix domain HRD68_10610 PF01694 Rhomboid family HRD68_10610 PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease HRD68_10615 PF00581 Rhodanese-like domain HRD68_10625 PF00196 Bacterial regulatory proteins, luxR family HRD68_10625 PF17874 MalT-like TPR region HRD68_10630 PF00343 Carbohydrate phosphorylase HRD68_10635 PF02446 4-alpha-glucanotransferase HRD68_10640 PF01106 NifU-like domain HRD68_10640 PF01521 Iron-sulphur cluster biosynthesis HRD68_10645 PF00156 Phosphoribosyl transferase domain HRD68_10650 PF00561 alpha/beta hydrolase fold HRD68_10655 PF07338 Protein of unknown function (DUF1471) HRD68_10660 PF09012 FeoC like transcriptional regulator HRD68_10665 PF07670 Nucleoside recognition HRD68_10665 PF02421 Ferrous iron transport protein B HRD68_10665 PF17910 FeoB cytosolic helical domain HRD68_10665 PF07664 Ferrous iron transport protein B C terminus HRD68_10670 PF04023 FeoA domain HRD68_10675 PF00575 S1 RNA binding domain HRD68_10675 PF16921 Tex protein YqgF-like domain HRD68_10675 PF09371 Tex-like protein N-terminal domain HRD68_10675 PF17674 HHH domain HRD68_10680 PF03449 Transcription elongation factor, N-terminal HRD68_10680 PF01272 Transcription elongation factor, GreA/GreB, C-term HRD68_10685 PF00072 Response regulator receiver domain HRD68_10685 PF00486 Transcriptional regulatory protein, C terminal HRD68_10690 PF00672 HAMP domain HRD68_10690 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HRD68_10690 PF00512 His Kinase A (phospho-acceptor) domain HRD68_10705 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain HRD68_10710 PF00577 Outer membrane usher protein HRD68_10710 PF13954 PapC N-terminal domain HRD68_10710 PF13953 PapC C-terminal domain HRD68_10730 PF01293 Phosphoenolpyruvate carboxykinase HRD68_10735 PF01430 Hsp33 protein HRD68_10740 PF01479 S4 domain HRD68_10745 PF13419 Haloacid dehalogenase-like hydrolase HRD68_10750 PF07095 Intracellular growth attenuator protein IgaA HRD68_10755 PF00293 NUDIX domain HRD68_10760 PF00912 Transglycosylase HRD68_10760 PF17092 Penicillin-binding protein OB-like domain HRD68_10760 PF00905 Penicillin binding protein transpeptidase domain HRD68_10785 PF00263 Bacterial type II and III secretion system protein HRD68_10785 PF03958 Bacterial type II/III secretion system short domain HRD68_10790 PF01202 Shikimate kinase HRD68_10795 PF01761 3-dehydroquinate synthase HRD68_10800 PF05036 Sporulation related domain HRD68_10805 PF02086 D12 class N6 adenine-specific DNA methyltransferase HRD68_10810 PF00834 Ribulose-phosphate 3 epimerase family HRD68_10815 PF13419 Haloacid dehalogenase-like hydrolase HRD68_10820 PF00579 tRNA synthetases class I (W and Y) HRD68_10825 PF14824 Sirohaem biosynthesis protein central HRD68_10825 PF10414 Sirohaem synthase dimerisation region HRD68_10825 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases HRD68_10830 PF01226 Formate/nitrite transporter HRD68_10835 PF13806 Rieske-like [2Fe-2S] domain HRD68_10840 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain HRD68_10840 PF18267 Rubredoxin NAD+ reductase C-terminal domain HRD68_10840 PF01077 Nitrite and sulphite reductase 4Fe-4S domain HRD68_10840 PF04324 BFD-like [2Fe-2S] binding domain HRD68_10840 PF07992 Pyridine nucleotide-disulphide oxidoreductase HRD68_10845 PF07969 Amidohydrolase family HRD68_10850 PF07690 Major Facilitator Superfamily HRD68_10860 PF07715 TonB-dependent Receptor Plug Domain HRD68_10860 PF00593 TonB dependent receptor HRD68_10865 PF00356 Bacterial regulatory proteins, lacI family HRD68_10870 PF11975 Family 4 glycosyl hydrolase C-terminal domain HRD68_10870 PF02056 Family 4 glycosyl hydrolase HRD68_10875 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD HRD68_10880 PF05872 Bacterial protein of unknown function (DUF853) HRD68_10885 PF00117 Glutamine amidotransferase class-I HRD68_10890 PF00202 Aminotransferase class-III HRD68_10925 PF09134 Invasin, domain 3 HRD68_10925 PF11924 Inverse autotransporter, beta-domain HRD68_10925 PF02369 Bacterial Ig-like domain (group 1) HRD68_10935 PF12951 Passenger-associated-transport-repeat HRD68_10940 PF12805 FUSC-like inner membrane protein yccS HRD68_10945 PF13545 Crp-like helix-turn-helix domain HRD68_10945 PF00027 Cyclic nucleotide-binding domain HRD68_10950 PF02566 OsmC-like protein HRD68_10955 PF00485 Phosphoribulokinase / Uridine kinase family HRD68_10960 PF06794 Uncharacterised protein family (UPF0270) HRD68_10965 PF00561 alpha/beta hydrolase fold HRD68_10970 PF01810 LysE type translocator HRD68_10975 PF02567 Phenazine biosynthesis-like protein HRD68_10980 PF04069 Substrate binding domain of ABC-type glycine betaine transport system HRD68_10985 PF00005 ABC transporter HRD68_10990 PF00528 Binding-protein-dependent transport system inner membrane component HRD68_10995 PF02668 Taurine catabolism dioxygenase TauD, TfdA family HRD68_11005 PF12848 ABC transporter HRD68_11005 PF00005 ABC transporter HRD68_11010 PF02525 Flavodoxin-like fold HRD68_11015 PF02254 TrkA-N domain HRD68_11015 PF00999 Sodium/hydrogen exchanger family HRD68_11020 PF09526 Probable metal-binding protein (DUF2387) HRD68_11025 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase HRD68_11030 PF04102 SlyX HRD68_11035 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase HRD68_11035 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase HRD68_11040 PF13309 HTH domain HRD68_11040 PF08348 YheO-like PAS domain HRD68_11045 PF02635 DsrE/DsrF-like family HRD68_11050 PF02635 DsrE/DsrF-like family HRD68_11055 PF04077 DsrH like protein HRD68_11060 PF00164 Ribosomal protein S12/S23 HRD68_11065 PF00177 Ribosomal protein S7p/S5e HRD68_11070 PF03764 Elongation factor G, domain IV HRD68_11070 PF03144 Elongation factor Tu domain 2 HRD68_11070 PF00009 Elongation factor Tu GTP binding domain HRD68_11070 PF00679 Elongation factor G C-terminus HRD68_11070 PF14492 Elongation Factor G, domain II HRD68_11075 PF03143 Elongation factor Tu C-terminal domain HRD68_11075 PF03144 Elongation factor Tu domain 2 HRD68_11075 PF00009 Elongation factor Tu GTP binding domain HRD68_11080 PF04324 BFD-like [2Fe-2S] binding domain HRD68_11085 PF00210 Ferritin-like domain HRD68_11090 PF00338 Ribosomal protein S10p/S20e HRD68_11095 PF00297 Ribosomal protein L3 HRD68_11100 PF00573 Ribosomal protein L4/L1 family HRD68_11105 PF00276 Ribosomal protein L23 HRD68_11110 PF03947 Ribosomal Proteins L2, C-terminal domain HRD68_11110 PF00181 Ribosomal Proteins L2, RNA binding domain HRD68_11115 PF00203 Ribosomal protein S19 HRD68_11120 PF00237 Ribosomal protein L22p/L17e HRD68_11125 PF00189 Ribosomal protein S3, C-terminal domain HRD68_11125 PF07650 KH domain HRD68_11130 PF00252 Ribosomal protein L16p/L10e HRD68_11135 PF00831 Ribosomal L29 protein HRD68_11140 PF00366 Ribosomal protein S17 HRD68_11145 PF00238 Ribosomal protein L14p/L23e HRD68_11150 PF00467 KOW motif HRD68_11150 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 HRD68_11155 PF00281 Ribosomal protein L5 HRD68_11155 PF00673 ribosomal L5P family C-terminus HRD68_11160 PF00253 Ribosomal protein S14p/S29e HRD68_11165 PF00410 Ribosomal protein S8 HRD68_11170 PF00347 Ribosomal protein L6 HRD68_11175 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast HRD68_11180 PF00333 Ribosomal protein S5, N-terminal domain HRD68_11180 PF03719 Ribosomal protein S5, C-terminal domain HRD68_11185 PF00327 Ribosomal protein L30p/L7e HRD68_11190 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A HRD68_11195 PF00344 SecY translocase HRD68_11200 PF00444 Ribosomal protein L36 HRD68_11205 PF00416 Ribosomal protein S13/S18 HRD68_11210 PF00411 Ribosomal protein S11 HRD68_11215 PF00163 Ribosomal protein S4/S9 N-terminal domain HRD68_11215 PF01479 S4 domain HRD68_11220 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain HRD68_11220 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain HRD68_11220 PF01000 RNA polymerase Rpb3/RpoA insert domain HRD68_11225 PF01196 Ribosomal protein L17 HRD68_11230 PF09350 Domain of unknown function (DUF1992) HRD68_11235 PF13411 MerR HTH family regulatory protein HRD68_11240 PF03889 Alternative ribosome-rescue factor A HRD68_11245 PF01741 Large-conductance mechanosensitive channel, MscL HRD68_11250 PF02080 TrkA-C domain HRD68_11250 PF02254 TrkA-N domain HRD68_11255 PF01029 NusB family HRD68_11255 PF01189 16S rRNA methyltransferase RsmB/F HRD68_11260 PF00551 Formyl transferase HRD68_11260 PF02911 Formyl transferase, C-terminal domain HRD68_11265 PF01327 Polypeptide deformylase HRD68_11270 PF02481 DNA recombination-mediator protein A HRD68_11270 PF17782 DprA winged helix domain HRD68_11275 PF04361 Protein of unknown function (DUF494) HRD68_11280 PF01396 Topoisomerase DNA binding C4 zinc finger HRD68_11285 PF01300 Telomere recombination HRD68_11290 PF08501 Shikimate dehydrogenase substrate binding domain HRD68_11290 PF18317 Shikimate 5'-dehydrogenase C-terminal domain HRD68_11290 PF01488 Shikimate / quinate 5-dehydrogenase HRD68_11295 PF00132 Bacterial transferase hexapeptide (six repeats) HRD68_11325 PF04204 Homoserine O-succinyltransferase HRD68_11330 PF01274 Malate synthase HRD68_11335 PF00463 Isocitrate lyase family HRD68_11340 PF06315 Isocitrate dehydrogenase kinase/phosphatase (AceK) HRD68_11345 PF09339 IclR helix-turn-helix domain HRD68_11345 PF01614 Bacterial transcriptional regulator HRD68_11350 PF02310 B12 binding domain HRD68_11350 PF02607 B12 binding domain HRD68_11350 PF02965 Vitamin B12 dependent methionine synthase, activation domain HRD68_11350 PF00809 Pterin binding enzyme HRD68_11350 PF02574 Homocysteine S-methyltransferase HRD68_11355 PF01758 Sodium Bile acid symporter family HRD68_11360 PF01842 ACT domain HRD68_11360 PF00696 Amino acid kinase family HRD68_11365 PF00342 Phosphoglucose isomerase HRD68_11370 PF06146 Phosphate-starvation-inducible E HRD68_11375 PF00528 Binding-protein-dependent transport system inner membrane component HRD68_11380 PF14785 Maltose transport system permease protein MalF P2 domain HRD68_11380 PF00528 Binding-protein-dependent transport system inner membrane component HRD68_11385 PF01547 Bacterial extracellular solute-binding protein HRD68_11390 PF17912 MalK OB fold domain HRD68_11390 PF00005 ABC transporter HRD68_11395 PF02264 LamB porin HRD68_11400 PF07148 Maltose operon periplasmic protein precursor (MalM) HRD68_11405 PF04345 Chorismate lyase HRD68_11410 PF01040 UbiA prenyltransferase family HRD68_11415 PF01553 Acyltransferase HRD68_11420 PF01219 Prokaryotic diacylglycerol kinase HRD68_11425 PF01726 LexA DNA binding domain HRD68_11425 PF00717 Peptidase S24-like HRD68_11430 PF05532 CsbD-like HRD68_11435 PF01475 Ferric uptake regulator family HRD68_11440 PF03797 Autotransporter beta-domain HRD68_11445 PF01207 Dihydrouridine synthase (Dus) HRD68_11450 PF09583 Phage shock protein G (Phageshock_PspG) HRD68_11455 PF08240 Alcohol dehydrogenase GroES-like domain HRD68_11455 PF00107 Zinc-binding dehydrogenase HRD68_11460 PF00772 DnaB-like helicase N terminal domain HRD68_11460 PF03796 DnaB-like helicase C terminal domain HRD68_11465 PF00842 Alanine racemase, C-terminal domain HRD68_11465 PF01168 Alanine racemase, N-terminal domain HRD68_11470 PF00155 Aminotransferase class I and II HRD68_11475 PF04237 YjbR HRD68_11480 PF17755 UvrA DNA-binding domain HRD68_11480 PF17760 UvrA interaction domain HRD68_11480 PF00005 ABC transporter HRD68_11485 PF00436 Single-strand binding protein family HRD68_11505 PF00860 Permease family HRD68_11510 PF00999 Sodium/hydrogen exchanger family HRD68_11515 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HRD68_11515 PF03466 LysR substrate binding domain HRD68_11520 PF03788 LrgA family HRD68_11525 PF04172 LrgB-like family HRD68_11530 PF00005 ABC transporter HRD68_11535 PF00528 Binding-protein-dependent transport system inner membrane component HRD68_11540 PF00528 Binding-protein-dependent transport system inner membrane component HRD68_11545 PF00497 Bacterial extracellular solute-binding proteins, family 3 HRD68_11555 PF03279 Bacterial lipid A biosynthesis acyltransferase HRD68_11565 PF00005 ABC transporter HRD68_11570 PF02653 Branched-chain amino acid transport system / permease component HRD68_11580 PF00370 FGGY family of carbohydrate kinases, N-terminal domain HRD68_11580 PF02782 FGGY family of carbohydrate kinases, C-terminal domain HRD68_11585 PF01380 SIS domain HRD68_11585 PF00571 CBS domain HRD68_11590 PF00939 Sodium:sulfate symporter transmembrane region HRD68_11595 PF00313 'Cold-shock' DNA-binding domain HRD68_11600 PF00313 'Cold-shock' DNA-binding domain HRD68_11605 PF05433 Glycine zipper 2TM domain HRD68_11610 PF00072 Response regulator receiver domain HRD68_11610 PF00990 Diguanylate cyclase, GGDEF domain HRD68_11620 PF02954 Bacterial regulatory protein, Fis family HRD68_11625 PF01207 Dihydrouridine synthase (Dus) HRD68_11635 PF00474 Sodium:solute symporter family HRD68_11640 PF06196 Protein of unknown function (DUF997) HRD68_11645 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain HRD68_11645 PF00289 Biotin carboxylase, N-terminal domain HRD68_11645 PF02785 Biotin carboxylase C-terminal domain HRD68_11650 PF00364 Biotin-requiring enzyme HRD68_11655 PF01220 Dehydroquinase class II HRD68_11660 PF01794 Ferric reductase like transmembrane component HRD68_11665 PF00174 Oxidoreductase molybdopterin binding domain HRD68_11670 PF00107 Zinc-binding dehydrogenase HRD68_11670 PF08240 Alcohol dehydrogenase GroES-like domain HRD68_11675 PF17157 Gammaproteobacterial periplasmic sensor domain HRD68_11675 PF00990 Diguanylate cyclase, GGDEF domain HRD68_11675 PF00563 EAL domain HRD68_11685 PF04085 rod shape-determining protein MreC HRD68_11690 PF04093 rod shape-determining protein MreD HRD68_11695 PF02545 Maf-like protein HRD68_11700 PF00575 S1 RNA binding domain HRD68_11700 PF10150 Ribonuclease E/G family HRD68_11705 PF13116 Protein of unknown function HRD68_11705 PF13502 AsmA-like C-terminal region HRD68_11710 PF00795 Carbon-nitrogen hydrolase HRD68_11715 PF01523 Putative modulator of DNA gyrase HRD68_11720 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HRD68_11720 PF03466 LysR substrate binding domain HRD68_11725 PF07869 Protein of unknown function (DUF1656) HRD68_11730 PF13533 Biotin-lipoyl like HRD68_11735 PF04632 Fusaric acid resistance protein family HRD68_11740 PF00171 Aldehyde dehydrogenase family HRD68_11750 PF01337 Barstar (barnase inhibitor) HRD68_11755 PF04751 Protein of unknown function (DUF615) HRD68_11760 PF01523 Putative modulator of DNA gyrase HRD68_11770 PF07361 Cytochrome b562 HRD68_11775 PF14760 Rnk N-terminus HRD68_11775 PF01272 Transcription elongation factor, GreA/GreB, C-term HRD68_11805 PF01979 Amidohydrolase family HRD68_11810 PF03841 L-seryl-tRNA selenium transferase HRD68_11815 PF07071 KDGP aldolase HRD68_11820 PF08279 HTH domain HRD68_11820 PF05043 Mga helix-turn-helix domain HRD68_11820 PF00874 PRD domain HRD68_11820 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 HRD68_11825 PF00690 Cation transporter/ATPase, N-terminus HRD68_11825 PF00689 Cation transporting ATPase, C-terminus HRD68_11830 PF00356 Bacterial regulatory proteins, lacI family HRD68_11835 PF00367 phosphotransferase system, EIIB HRD68_11835 PF02378 Phosphotransferase system, EIIC HRD68_11840 PF11941 Domain of unknown function (DUF3459) HRD68_11840 PF00128 Alpha amylase, catalytic domain HRD68_11845 PF00700 Bacterial flagellin C-terminal helical region HRD68_11845 PF08884 Flagellin D3 domain HRD68_11845 PF00669 Bacterial flagellin N-terminal helical region HRD68_11865 PF04168 A predicted alpha-helical domain with a conserved ER motif. HRD68_11865 PF14403 Circularly permuted ATP-grasp type 2 HRD68_11870 PF14403 Circularly permuted ATP-grasp type 2 HRD68_11875 PF01042 Endoribonuclease L-PSP HRD68_11880 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain HRD68_11880 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain HRD68_11885 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain HRD68_11885 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain HRD68_11890 PF00381 PTS HPr component phosphorylation site HRD68_11895 PF03668 P-loop ATPase protein family HRD68_11900 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 HRD68_11905 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein HRD68_11910 PF04963 Sigma-54 factor, core binding domain HRD68_11910 PF04552 Sigma-54, DNA binding domain HRD68_11910 PF00309 Sigma-54 factor, Activator interacting domain (AID) HRD68_11915 PF00005 ABC transporter HRD68_11915 PF12399 Branched-chain amino acid ATP-binding cassette transporter HRD68_11920 PF03968 OstA-like protein HRD68_11925 PF06835 Lipopolysaccharide-assembly, LptC-related HRD68_11935 PF00571 CBS domain HRD68_11935 PF01380 SIS domain HRD68_11940 PF01699 Sodium/calcium exchanger protein HRD68_11945 PF00005 ABC transporter HRD68_11950 PF02405 Permease MlaE HRD68_11955 PF02470 MlaD protein HRD68_11960 PF05494 MlaC protein HRD68_11965 PF13466 STAS domain HRD68_11970 PF01722 BolA-like protein HRD68_11975 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) HRD68_11980 PF13180 PDZ domain HRD68_11985 PF13180 PDZ domain HRD68_11985 PF00595 PDZ domain HRD68_11990 PF06295 Protein of unknown function (DUF1043) HRD68_12000 PF00572 Ribosomal protein L13 HRD68_12005 PF00380 Ribosomal protein S9/S16 HRD68_12010 PF02798 Glutathione S-transferase, N-terminal domain HRD68_12010 PF00043 Glutathione S-transferase, C-terminal domain HRD68_12015 PF04386 Stringent starvation protein B HRD68_12025 PF07992 Pyridine nucleotide-disulphide oxidoreductase HRD68_12025 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster HRD68_12030 PF04898 Glutamate synthase central domain HRD68_12030 PF00310 Glutamine amidotransferases class-II HRD68_12030 PF01645 Conserved region in glutamate synthase HRD68_12030 PF01493 GXGXG motif HRD68_12035 PF04055 Radical SAM superfamily HRD68_12035 PF16199 Radical_SAM C-terminal domain HRD68_12040 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HRD68_12040 PF00072 Response regulator receiver domain HRD68_12040 PF00989 PAS fold HRD68_12040 PF01627 Hpt domain HRD68_12040 PF18415 Histidine kinase receptor ArcB trans-membrane domain HRD68_12040 PF00512 His Kinase A (phospho-acceptor) domain HRD68_12050 PF00912 Transglycosylase HRD68_12055 PF04972 BON domain HRD68_12060 PF13580 SIS domain HRD68_12065 PF02021 Uncharacterised protein family UPF0102 HRD68_12070 PF04348 LppC putative lipoprotein HRD68_12075 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases HRD68_12100 PF03466 LysR substrate binding domain HRD68_12100 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HRD68_12110 PF00107 Zinc-binding dehydrogenase HRD68_12110 PF08240 Alcohol dehydrogenase GroES-like domain HRD68_12115 PF02678 Pirin HRD68_12115 PF17954 Quercetinase C-terminal cupin domain HRD68_12120 PF03466 LysR substrate binding domain HRD68_12120 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HRD68_12125 PF13409 Glutathione S-transferase, N-terminal domain HRD68_12130 PF07681 DoxX HRD68_12135 PF13997 YqjK-like protein HRD68_12140 PF07332 Putative Actinobacterial Holin-X, holin superfamily III HRD68_12145 PF05957 Bacterial protein of unknown function (DUF883) HRD68_12155 PF13721 SecD export protein N-terminal TM region HRD68_12160 PF09335 SNARE associated Golgi protein HRD68_12170 PF00392 Bacterial regulatory proteins, gntR family HRD68_12170 PF07729 FCD domain HRD68_12175 PF07690 Major Facilitator Superfamily HRD68_12180 PF02614 Glucuronate isomerase HRD68_12185 PF08125 Mannitol dehydrogenase C-terminal domain HRD68_12185 PF01232 Mannitol dehydrogenase Rossmann domain HRD68_12190 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus HRD68_12190 PF08666 SAF domain HRD68_12195 PF10688 Bacterial inner membrane protein HRD68_12200 PF00375 Sodium:dicarboxylate symporter family HRD68_12205 PF03741 Integral membrane protein TerC family HRD68_12215 PF01408 Oxidoreductase family, NAD-binding Rossmann fold HRD68_12220 PF01863 Protein of unknown function DUF45 HRD68_12225 PF05175 Methyltransferase small domain HRD68_12230 PF03797 Autotransporter beta-domain HRD68_12230 PF13018 Extended Signal Peptide of Type V secretion system HRD68_12230 PF16168 Adhesin of bacterial autotransporter system, probable stalk HRD68_12235 PF07992 Pyridine nucleotide-disulphide oxidoreductase HRD68_12235 PF00724 NADH:flavin oxidoreductase / NADH oxidase family HRD68_12240 PF03729 Short repeat of unknown function (DUF308) HRD68_12250 PF01081 KDPG and KHG aldolase HRD68_12255 PF07690 Major Facilitator Superfamily HRD68_12270 PF00465 Iron-containing alcohol dehydrogenase HRD68_12275 PF00155 Aminotransferase class I and II HRD68_12290 PF00589 Phage integrase family HRD68_12290 PF02899 Phage integrase, N-terminal SAM-like domain HRD68_12305 PF06892 Phage regulatory protein CII (CP76) HRD68_12325 PF05840 Bacteriophage replication gene A protein (GPA) HRD68_12425 PF06114 IrrE N-terminal-like domain HRD68_12500 PF04606 Ogr/Delta-like zinc finger HRD68_12510 PF04542 Sigma-70 region 2 HRD68_12510 PF00140 Sigma-70 factor, region 1.2 HRD68_12510 PF04539 Sigma-70 region 3 HRD68_12510 PF04545 Sigma-70, region 4 HRD68_12510 PF04546 Sigma-70, non-essential region HRD68_12510 PF03979 Sigma-70 factor, region 1.1 HRD68_12515 PF10410 DnaB-helicase binding domain of primase HRD68_12515 PF01807 CHC2 zinc finger HRD68_12515 PF08278 DNA primase DnaG DnaB-binding HRD68_12515 PF08275 DNA primase catalytic core, N-terminal domain HRD68_12520 PF01165 Ribosomal protein S21 HRD68_12525 PF00814 Glycoprotease family HRD68_12530 PF02660 Glycerol-3-phosphate acyltransferase HRD68_12535 PF02152 Dihydroneopterin aldolase HRD68_12540 PF02673 Bacitracin resistance protein BacA HRD68_12545 PF12627 Probable RNA and SrmB- binding site of polymerase A HRD68_12545 PF01966 HD domain HRD68_12545 PF01743 Poly A polymerase head domain HRD68_12550 PF08239 Bacterial SH3 domain HRD68_12555 PF01928 CYTH domain HRD68_12560 PF03710 Glutamate-ammonia ligase adenylyltransferase HRD68_12560 PF08335 GlnD PII-uridylyltransferase HRD68_12565 PF00294 pfkB family carbohydrate kinase HRD68_12565 PF01467 Cytidylyltransferase-like HRD68_12570 PF13520 Amino acid permease HRD68_12575 PF04380 Membrane fusogenic activity HRD68_12580 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase HRD68_12585 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase HRD68_12590 PF03738 Glutathionylspermidine synthase preATP-grasp HRD68_12595 PF06693 Protein of unknown function (DUF1190) HRD68_12600 PF02321 Outer membrane efflux protein HRD68_12605 PF00293 NUDIX domain HRD68_12610 PF06853 Protein of unknown function (DUF1249) HRD68_12615 PF00149 Calcineurin-like phosphoesterase HRD68_12620 PF05728 Uncharacterised protein family (UPF0227) HRD68_12625 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HRD68_12625 PF00986 DNA gyrase B subunit, carboxyl terminus HRD68_12625 PF01751 Toprim domain HRD68_12625 PF00204 DNA gyrase B HRD68_12630 PF03466 LysR substrate binding domain HRD68_12630 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HRD68_12635 PF03992 Antibiotic biosynthesis monooxygenase HRD68_12640 PF02525 Flavodoxin-like fold HRD68_12645 PF03989 DNA gyrase C-terminal domain, beta-propeller HRD68_12645 PF00521 DNA gyrase/topoisomerase IV, subunit A HRD68_12650 PF01553 Acyltransferase HRD68_12655 PF07732 Multicopper oxidase HRD68_12655 PF07731 Multicopper oxidase HRD68_12660 PF08497 Radical SAM N-terminal HRD68_12660 PF11842 Domain of unknown function (DUF3362) HRD68_12660 PF04055 Radical SAM superfamily HRD68_12665 PF00248 Aldo/keto reductase family HRD68_12670 PF00465 Iron-containing alcohol dehydrogenase HRD68_12675 PF06719 AraC-type transcriptional regulator N-terminus HRD68_12675 PF12833 Helix-turn-helix domain HRD68_12680 PF09335 SNARE associated Golgi protein HRD68_12685 PF01053 Cys/Met metabolism PLP-dependent enzyme HRD68_12690 PF01618 MotA/TolQ/ExbB proton channel family HRD68_12695 PF02472 Biopolymer transport protein ExbD/TolR HRD68_12730 PF00437 Type II/IV secretion system protein HRD68_12745 PF13629 Pilus formation protein N terminal region HRD68_12745 PF04972 BON domain HRD68_12745 PF00263 Bacterial type II and III secretion system protein HRD68_12770 PF00873 AcrB/AcrD/AcrF family HRD68_12775 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion HRD68_12775 PF00529 HlyD membrane-fusion protein of T1SS HRD68_12795 PF11806 Domain of unknown function (DUF3327) HRD68_12795 PF00756 Putative esterase HRD68_12800 PF00005 ABC transporter HRD68_12805 PF01032 FecCD transport family HRD68_12810 PF01032 FecCD transport family HRD68_12815 PF07690 Major Facilitator Superfamily HRD68_12820 PF00294 pfkB family carbohydrate kinase HRD68_12830 PF00356 Bacterial regulatory proteins, lacI family HRD68_12840 PF01497 Periplasmic binding protein HRD68_12845 PF00672 HAMP domain HRD68_12845 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HRD68_12845 PF02203 Tar ligand binding domain homologue HRD68_12860 PF18500 CadC C-terminal domain 1 HRD68_12860 PF00486 Transcriptional regulatory protein, C terminal HRD68_12865 PF05433 Glycine zipper 2TM domain HRD68_12870 PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal HRD68_12870 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit HRD68_12875 PF13247 4Fe-4S dicluster domain HRD68_12880 PF03916 Polysulphide reductase, NrfD HRD68_12885 PF00374 Nickel-dependent hydrogenase HRD68_12890 PF01750 Hydrogenase maturation protease HRD68_12895 PF11939 [NiFe]-hydrogenase assembly, chaperone, HybE HRD68_12900 PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA HRD68_12905 PF02492 CobW/HypB/UreG, nucleotide-binding domain HRD68_12910 PF01455 HupF/HypC family HRD68_12915 PF01924 Hydrogenase formation hypA family HRD68_12920 PF02769 AIR synthase related protein, C-terminal domain HRD68_12920 PF00586 AIR synthase related protein, N-terminal domain HRD68_12925 PF01300 Telomere recombination HRD68_12925 PF00708 Acylphosphatase HRD68_12925 PF17788 HypF Kae1-like domain HRD68_12925 PF07503 HypF finger HRD68_12930 PF11769 Protein of unknown function (DUF3313) HRD68_12935 PF00990 Diguanylate cyclase, GGDEF domain HRD68_12935 PF08448 PAS fold HRD68_12935 PF00563 EAL domain HRD68_12935 PF08447 PAS fold HRD68_12940 PF00939 Sodium:sulfate symporter transmembrane region HRD68_12945 PF05683 Fumarase C-terminus HRD68_12950 PF05681 Fumarate hydratase (Fumerase) HRD68_12955 PF03466 LysR substrate binding domain HRD68_12955 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HRD68_12960 PF00529 HlyD membrane-fusion protein of T1SS HRD68_12960 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion HRD68_12965 PF00873 AcrB/AcrD/AcrF family HRD68_12970 PF00324 Amino acid permease HRD68_12975 PF06751 Ethanolamine ammonia lyase large subunit (EutB) HRD68_12980 PF05985 Ethanolamine ammonia-lyase light chain (EutC) HRD68_12985 PF00083 Sugar (and other) transporter HRD68_12985 PF08946 Osmosensory transporter coiled coil HRD68_12995 PF03797 Autotransporter beta-domain HRD68_13000 PF02690 Na+/Pi-cotransporter HRD68_13005 PF01156 Inosine-uridine preferring nucleoside hydrolase HRD68_13010 PF00356 Bacterial regulatory proteins, lacI family HRD68_13015 PF07690 Major Facilitator Superfamily HRD68_13015 PF00083 Sugar (and other) transporter HRD68_13020 PF01497 Periplasmic binding protein HRD68_13025 PF01032 FecCD transport family HRD68_13030 PF01032 FecCD transport family HRD68_13035 PF00005 ABC transporter HRD68_13040 PF00557 Metallopeptidase family M24 HRD68_13055 PF01116 Fructose-bisphosphate aldolase class-II HRD68_13060 PF01380 SIS domain HRD68_13065 PF01979 Amidohydrolase family HRD68_13070 PF03610 PTS system fructose IIA component HRD68_13075 PF03613 PTS system mannose/fructose/sorbose family IID component HRD68_13080 PF03609 PTS system sorbose-specific iic component HRD68_13085 PF03830 PTS system sorbose subfamily IIB component HRD68_13090 PF08013 Tagatose 6 phosphate kinase HRD68_13095 PF08220 DeoR-like helix-turn-helix domain HRD68_13095 PF00455 DeoR C terminal sensor domain HRD68_13100 PF01209 ubiE/COQ5 methyltransferase family HRD68_13105 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle HRD68_13110 PF00528 Binding-protein-dependent transport system inner membrane component HRD68_13115 PF00528 Binding-protein-dependent transport system inner membrane component HRD68_13115 PF12911 N-terminal TM domain of oligopeptide transport permease C HRD68_13120 PF00005 ABC transporter HRD68_13125 PF00005 ABC transporter HRD68_13130 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB HRD68_13130 PF17287 POTRA domain HRD68_13130 PF08479 POTRA domain, ShlB-type HRD68_13135 PF05860 haemagglutination activity domain HRD68_13135 PF13018 Extended Signal Peptide of Type V secretion system HRD68_13135 PF13332 Hemagglutinin repeat HRD68_13135 PF04829 Pre-toxin domain with VENN motif HRD68_13150 PF18228 CdiI N-terminal domain HRD68_13180 PF04829 Pre-toxin domain with VENN motif HRD68_13180 PF05860 haemagglutination activity domain HRD68_13180 PF13332 Hemagglutinin repeat HRD68_13215 PF00691 OmpA family HRD68_13215 PF13488 Glycine zipper HRD68_13225 PF00004 ATPase family associated with various cellular activities (AAA) HRD68_13225 PF07724 AAA domain (Cdc48 subfamily) HRD68_13225 PF17871 AAA lid domain HRD68_13225 PF10431 C-terminal, D2-small domain, of ClpB protein HRD68_13245 PF00877 NlpC/P60 family HRD68_13245 PF01476 LysM domain HRD68_13305 PF01979 Amidohydrolase family HRD68_13315 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion HRD68_13315 PF00529 HlyD membrane-fusion protein of T1SS HRD68_13320 PF04632 Fusaric acid resistance protein family HRD68_13340 PF02369 Bacterial Ig-like domain (group 1) HRD68_13340 PF09134 Invasin, domain 3 HRD68_13340 PF07979 Intimin C-type lectin domain HRD68_13340 PF11924 Inverse autotransporter, beta-domain HRD68_13350 PF01569 PAP2 superfamily HRD68_13375 PF00437 Type II/IV secretion system protein HRD68_13390 PF04972 BON domain HRD68_13390 PF00263 Bacterial type II and III secretion system protein HRD68_13390 PF13629 Pilus formation protein N terminal region HRD68_13435 PF00005 ABC transporter HRD68_13440 PF00528 Binding-protein-dependent transport system inner membrane component HRD68_13460 PF09134 Invasin, domain 3 HRD68_13460 PF02369 Bacterial Ig-like domain (group 1) HRD68_13460 PF11924 Inverse autotransporter, beta-domain HRD68_13480 PF02203 Tar ligand binding domain homologue HRD68_13480 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HRD68_13480 PF00672 HAMP domain HRD68_13485 PF00196 Bacterial regulatory proteins, luxR family HRD68_13485 PF00072 Response regulator receiver domain HRD68_13510 PF04316 Anti-sigma-28 factor, FlgM HRD68_13520 PF00460 Flagella basal body rod protein HRD68_13525 PF00460 Flagella basal body rod protein HRD68_13525 PF06429 Flagellar basal body rod FlgEFG protein C-terminal HRD68_13530 PF13861 FlgD Tudor-like domain HRD68_13530 PF03963 Flagellar hook capping protein - N-terminal region HRD68_13530 PF13860 FlgD Ig-like domain HRD68_13535 PF07559 Flagellar basal body protein FlaE HRD68_13535 PF00460 Flagella basal body rod protein HRD68_13535 PF06429 Flagellar basal body rod FlgEFG protein C-terminal HRD68_13540 PF06429 Flagellar basal body rod FlgEFG protein C-terminal HRD68_13540 PF00460 Flagella basal body rod protein HRD68_13545 PF00460 Flagella basal body rod protein HRD68_13545 PF06429 Flagellar basal body rod FlgEFG protein C-terminal HRD68_13550 PF02107 Flagellar L-ring protein HRD68_13555 PF02119 Flagellar P-ring protein HRD68_13560 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase HRD68_13560 PF10135 Rod binding protein HRD68_13565 PF06429 Flagellar basal body rod FlgEFG protein C-terminal HRD68_13565 PF00460 Flagella basal body rod protein HRD68_13570 PF00669 Bacterial flagellin N-terminal helical region HRD68_13575 PF04545 Sigma-70, region 4 HRD68_13575 PF04539 Sigma-70 region 3 HRD68_13575 PF04542 Sigma-70 region 2 HRD68_13580 PF05247 Flagellar transcriptional activator (FlhD) HRD68_13585 PF05280 Flagellar transcriptional activator (FlhC) HRD68_13590 PF01618 MotA/TolQ/ExbB proton channel family HRD68_13595 PF00691 OmpA family HRD68_13595 PF13677 Membrane MotB of proton-channel complex MotA/MotB HRD68_13600 PF01584 CheW-like domain HRD68_13600 PF09078 CheY binding HRD68_13600 PF02895 Signal transducing histidine kinase, homodimeric domain HRD68_13600 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HRD68_13600 PF01627 Hpt domain HRD68_13605 PF01584 CheW-like domain HRD68_13615 PF02743 Cache domain HRD68_13615 PF00672 HAMP domain HRD68_13615 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HRD68_13620 PF00669 Bacterial flagellin N-terminal helical region HRD68_13620 PF00700 Bacterial flagellin C-terminal helical region HRD68_13620 PF08884 Flagellin D3 domain HRD68_13625 PF02465 Flagellar hook-associated protein 2 N-terminus HRD68_13625 PF07196 Flagellin hook IN motif HRD68_13625 PF07195 Flagellar hook-associated protein 2 C-terminus HRD68_13630 PF02561 Flagellar protein FliS HRD68_13645 PF00771 FHIPEP family HRD68_13650 PF01312 FlhB HrpN YscU SpaS Family HRD68_13655 PF04344 Chemotaxis phosphatase, CheZ HRD68_13660 PF00072 Response regulator receiver domain HRD68_13665 PF01339 CheB methylesterase HRD68_13665 PF00072 Response regulator receiver domain HRD68_13670 PF01739 CheR methyltransferase, SAM binding domain HRD68_13670 PF03705 CheR methyltransferase, all-alpha domain HRD68_13675 PF02049 Flagellar hook-basal body complex protein FliE HRD68_13680 PF08345 Flagellar M-ring protein C-terminal HRD68_13680 PF01514 Secretory protein of YscJ/FliF family HRD68_13685 PF01706 FliG C-terminal domain HRD68_13685 PF14842 FliG N-terminal domain HRD68_13685 PF14841 FliG middle domain HRD68_13690 PF02108 Flagellar assembly protein FliH HRD68_13695 PF18269 T3SS EscN ATPase C-terminal domain HRD68_13695 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain HRD68_13705 PF02120 Flagellar hook-length control protein FliK HRD68_13710 PF03748 Flagellar basal body-associated protein FliL HRD68_13715 PF02154 Flagellar motor switch protein FliM HRD68_13715 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term HRD68_13720 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term HRD68_13720 PF16973 Flagellar motor switch protein FliN N-terminal HRD68_13725 PF04347 Flagellar biosynthesis protein, FliO HRD68_13730 PF00813 FliP family HRD68_13735 PF01313 Bacterial export proteins, family 3 HRD68_13740 PF01311 Bacterial export proteins, family 1 HRD68_13750 PF00486 Transcriptional regulatory protein, C terminal HRD68_13750 PF00072 Response regulator receiver domain HRD68_13755 PF00144 Beta-lactamase HRD68_13760 PF03466 LysR substrate binding domain HRD68_13760 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HRD68_13765 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component HRD68_13775 PF03480 Bacterial extracellular solute-binding protein, family 7 HRD68_13780 PF04962 KduI/IolB family HRD68_13790 PF01408 Oxidoreductase family, NAD-binding Rossmann fold HRD68_13790 PF02894 Oxidoreductase family, C-terminal alpha/beta domain HRD68_13795 PF14583 Oligogalacturonate lyase HRD68_13800 PF13416 Bacterial extracellular solute-binding protein HRD68_13805 PF01261 Xylose isomerase-like TIM barrel HRD68_13810 PF01053 Cys/Met metabolism PLP-dependent enzyme HRD68_13815 PF03222 Tryptophan/tyrosine permease family HRD68_13820 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HRD68_13820 PF03466 LysR substrate binding domain HRD68_13830 PF13443 Cro/C1-type HTH DNA-binding domain HRD68_13845 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain HRD68_13845 PF02753 Pili assembly chaperone PapD, C-terminal domain HRD68_13850 PF00577 Outer membrane usher protein HRD68_13850 PF13953 PapC C-terminal domain HRD68_13850 PF13954 PapC N-terminal domain HRD68_13865 PF00072 Response regulator receiver domain HRD68_13865 PF00196 Bacterial regulatory proteins, luxR family HRD68_13875 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain HRD68_13875 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain HRD68_13875 PF01276 Orn/Lys/Arg decarboxylase, major domain HRD68_13880 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain HRD68_13880 PF01464 Transglycosylase SLT domain HRD68_13885 PF04362 Bacterial Fe(2+) trafficking HRD68_13890 PF00730 HhH-GPD superfamily base excision DNA repair protein HRD68_13890 PF14815 NUDIX domain HRD68_13890 PF10576 Iron-sulfur binding domain of endonuclease III HRD68_13890 PF00633 Helix-hairpin-helix motif HRD68_13895 PF02390 Putative methyltransferase HRD68_13900 PF04320 Protein with unknown function (DUF469) HRD68_13905 PF04960 Glutaminase HRD68_13910 PF11101 Protein of unknown function (DUF2884) HRD68_13915 PF04055 Radical SAM superfamily HRD68_13915 PF06969 HemN C-terminal domain HRD68_13920 PF01725 Ham1 family HRD68_13925 PF02594 Uncharacterised ACR, YggU family COG1872 HRD68_13930 PF02325 YGGT family HRD68_13935 PF03807 NADP oxidoreductase coenzyme F420-dependent HRD68_13935 PF14748 Pyrroline-5-carboxylate reductase dimerisation HRD68_13940 PF01168 Alanine racemase, N-terminal domain HRD68_13945 PF00437 Type II/IV secretion system protein HRD68_13950 PF04371 Porphyromonas-type peptidyl-arginine deiminase HRD68_13955 PF00795 Carbon-nitrogen hydrolase HRD68_13960 PF03652 Holliday junction resolvase HRD68_13965 PF02622 Uncharacterized ACR, COG1678 HRD68_13970 PF02951 Prokaryotic glutathione synthetase, N-terminal domain HRD68_13970 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain HRD68_13975 PF04452 RNA methyltransferase HRD68_13980 PF04231 Endonuclease I HRD68_13985 PF17283 SprT-like zinc ribbon domain HRD68_13985 PF10263 SprT-like family HRD68_13995 PF04143 Sulphur transport HRD68_14005 PF02773 S-adenosylmethionine synthetase, C-terminal domain HRD68_14005 PF00438 S-adenosylmethionine synthetase, N-terminal domain HRD68_14005 PF02772 S-adenosylmethionine synthetase, central domain HRD68_14010 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain HRD68_14010 PF17810 Arginine decarboxylase helical bundle domain HRD68_14010 PF17944 Arginine decarboxylase C-terminal helical extension HRD68_14015 PF00355 Rieske [2Fe-2S] domain HRD68_14020 PF01435 Peptidase family M48 HRD68_14025 PF02779 Transketolase, pyrimidine binding domain HRD68_14025 PF02780 Transketolase, C-terminal domain HRD68_14025 PF00456 Transketolase, thiamine diphosphate binding domain HRD68_14030 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain HRD68_14030 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain HRD68_14035 PF00162 Phosphoglycerate kinase HRD68_14040 PF01116 Fructose-bisphosphate aldolase class-II HRD68_14050 PF00924 Mechanosensitive ion channel HRD68_14050 PF05552 Conserved TM helix HRD68_14055 PF01810 LysE type translocator HRD68_14060 PF04402 Protein of unknown function (DUF541) HRD68_14065 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HRD68_14065 PF03466 LysR substrate binding domain HRD68_14070 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) HRD68_14075 PF01842 ACT domain HRD68_14075 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain HRD68_14075 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain HRD68_14080 PF01812 5-formyltetrahydrofolate cyclo-ligase family HRD68_14090 PF05164 Cell division protein ZapA HRD68_14095 PF03695 Uncharacterised protein family (UPF0149) HRD68_14100 PF00557 Metallopeptidase family M24 HRD68_14100 PF05195 Aminopeptidase P, N-terminal domain HRD68_14105 PF01494 FAD binding domain HRD68_14110 PF01494 FAD binding domain HRD68_14115 PF08669 Glycine cleavage T-protein C-terminal barrel domain HRD68_14115 PF01571 Aminomethyltransferase folate-binding domain HRD68_14120 PF01597 Glycine cleavage H-protein HRD68_14125 PF02347 Glycine cleavage system P-protein HRD68_14135 PF03006 Haemolysin-III related HRD68_14140 PF01571 Aminomethyltransferase folate-binding domain HRD68_14145 PF03937 Flavinator of succinate dehydrogenase HRD68_14150 PF07254 Membrane-bound toxin component of toxin-antitoxin system HRD68_14155 PF00486 Transcriptional regulatory protein, C terminal HRD68_14155 PF00072 Response regulator receiver domain HRD68_14160 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HRD68_14160 PF00672 HAMP domain HRD68_14160 PF00512 His Kinase A (phospho-acceptor) domain HRD68_14165 PF06123 Inner membrane protein CreD HRD68_14170 PF00258 Flavodoxin HRD68_14175 PF02899 Phage integrase, N-terminal SAM-like domain HRD68_14175 PF00589 Phage integrase family HRD68_14180 PF10411 Disulfide bond isomerase protein N-terminus HRD68_14180 PF13098 Thioredoxin-like domain HRD68_14185 PF02272 DHHA1 domain HRD68_14185 PF17768 RecJ OB domain HRD68_14185 PF01368 DHH family HRD68_14195 PF00152 tRNA synthetases class II (D, K and N) HRD68_14195 PF01336 OB-fold nucleic acid binding domain HRD68_14210 PF00248 Aldo/keto reductase family HRD68_14225 PF00561 alpha/beta hydrolase fold HRD68_14230 PF08448 PAS fold HRD68_14230 PF00990 Diguanylate cyclase, GGDEF domain HRD68_14235 PF01037 Lrp/AsnC ligand binding domain HRD68_14245 PF16338 Domain of unknown function (DUF4968) HRD68_14245 PF17137 Domain of unknown function (DUF5110) HRD68_14245 PF13802 Galactose mutarotase-like HRD68_14245 PF01055 Glycosyl hydrolases family 31 HRD68_14250 PF07690 Major Facilitator Superfamily HRD68_14255 PF00356 Bacterial regulatory proteins, lacI family HRD68_14260 PF01556 DnaJ C terminal domain HRD68_14260 PF00226 DnaJ domain HRD68_14275 PF01638 HxlR-like helix-turn-helix HRD68_14285 PF01478 Type IV leader peptidase family HRD68_14285 PF06750 Bacterial Peptidase A24 N-terminal domain HRD68_14310 PF03466 LysR substrate binding domain HRD68_14310 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HRD68_14315 PF07690 Major Facilitator Superfamily HRD68_14320 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HRD68_14320 PF03466 LysR substrate binding domain HRD68_14325 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain HRD68_14325 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain HRD68_14330 PF00356 Bacterial regulatory proteins, lacI family HRD68_14335 PF01568 Molydopterin dinucleotide binding domain HRD68_14335 PF00384 Molybdopterin oxidoreductase HRD68_14340 PF00501 AMP-binding enzyme HRD68_14340 PF13193 AMP-binding enzyme C-terminal domain HRD68_14340 PF01553 Acyltransferase HRD68_14345 PF07690 Major Facilitator Superfamily HRD68_14350 PF01381 Helix-turn-helix HRD68_14355 PF00248 Aldo/keto reductase family HRD68_14360 PF03741 Integral membrane protein TerC family HRD68_14365 PF02976 DNA mismatch repair enzyme MutH HRD68_14370 PF00293 NUDIX domain HRD68_14375 PF01590 GAF domain HRD68_14375 PF05524 PEP-utilising enzyme, N-terminal HRD68_14375 PF00391 PEP-utilising enzyme, mobile domain HRD68_14375 PF02896 PEP-utilising enzyme, TIM barrel domain HRD68_14380 PF01790 Prolipoprotein diacylglyceryl transferase HRD68_14385 PF00303 Thymidylate synthase HRD68_14390 PF07963 Prokaryotic N-terminal methylation motif HRD68_14410 PF17946 RecC C-terminal domain HRD68_14415 PF00675 Insulinase (Peptidase family M16) HRD68_14415 PF16187 Middle or third domain of peptidase_M16 HRD68_14415 PF05193 Peptidase M16 inactive domain HRD68_14420 PF00580 UvrD/REP helicase N-terminal domain HRD68_14420 PF12705 PD-(D/E)XK nuclease superfamily HRD68_14420 PF13361 UvrD-like helicase C-terminal domain HRD68_14425 PF13538 UvrD-like helicase C-terminal domain HRD68_14430 PF00696 Amino acid kinase family HRD68_14430 PF00583 Acetyltransferase (GNAT) family HRD68_14435 PF11741 AMIN domain HRD68_14435 PF01520 N-acetylmuramoyl-L-alanine amidase HRD68_14455 PF06725 3D domain HRD68_14455 PF03562 MltA specific insert domain HRD68_14460 PF00899 ThiF family HRD68_14465 PF02657 Fe-S metabolism associated domain HRD68_14470 PF00266 Aminotransferase class-V HRD68_14475 PF06004 Bacterial protein of unknown function (DUF903) HRD68_14480 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HRD68_14480 PF03466 LysR substrate binding domain HRD68_14485 PF04241 Protein of unknown function (DUF423) HRD68_14490 PF01728 FtsJ-like methyltransferase HRD68_14490 PF18125 RlmM ferredoxin-like domain HRD68_14495 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain HRD68_14495 PF01367 5'-3' exonuclease, C-terminal SAM fold HRD68_14500 PF03641 Possible lysine decarboxylase HRD68_14500 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases HRD68_14500 PF11892 Domain of unknown function (DUF3412) HRD68_14505 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term HRD68_14505 PF14489 QueF-like protein HRD68_14510 PF07348 Syd protein (SUKH-2) HRD68_14515 PF04287 tRNA pseudouridine synthase C HRD68_14520 PF00849 RNA pseudouridylate synthase HRD68_14525 PF00258 Flavodoxin HRD68_14535 PF11944 Protein of unknown function (DUF3461) HRD68_14540 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal HRD68_14540 PF14602 Hexapeptide repeat of succinyl-transferase HRD68_14540 PF00132 Bacterial transferase hexapeptide (six repeats) HRD68_14545 PF01909 Nucleotidyltransferase domain HRD68_14545 PF01842 ACT domain HRD68_14545 PF08335 GlnD PII-uridylyltransferase HRD68_14545 PF01966 HD domain HRD68_14550 PF00557 Metallopeptidase family M24 HRD68_14555 PF00318 Ribosomal protein S2 HRD68_14560 PF00889 Elongation factor TS HRD68_14565 PF00696 Amino acid kinase family HRD68_14570 PF01765 Ribosome recycling factor HRD68_14575 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain HRD68_14575 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase HRD68_14575 PF13288 DXP reductoisomerase C-terminal domain HRD68_14580 PF01255 Putative undecaprenyl diphosphate synthase HRD68_14590 PF17820 PDZ domain HRD68_14590 PF02163 Peptidase family M50 HRD68_14595 PF01103 Surface antigen HRD68_14595 PF07244 Surface antigen variable number repeat HRD68_14600 PF03938 Outer membrane protein (OmpH-like) HRD68_14605 PF00132 Bacterial transferase hexapeptide (six repeats) HRD68_14605 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD HRD68_14610 PF07977 FabA-like domain HRD68_14615 PF00132 Bacterial transferase hexapeptide (six repeats) HRD68_14615 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 HRD68_14620 PF02684 Lipid-A-disaccharide synthetase HRD68_14625 PF01351 Ribonuclease HII HRD68_14630 PF17657 Bacterial DNA polymerase III alpha subunit finger domain HRD68_14630 PF01336 OB-fold nucleic acid binding domain HRD68_14630 PF02811 PHP domain HRD68_14630 PF14579 Helix-hairpin-helix motif HRD68_14630 PF07733 Bacterial DNA polymerase III alpha NTPase domain HRD68_14635 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit HRD68_14640 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily HRD68_14645 PF11734 TilS substrate C-terminal domain HRD68_14645 PF01171 PP-loop family HRD68_14645 PF09179 TilS substrate binding domain HRD68_14650 PF00034 Cytochrome c HRD68_14655 PF07073 Modulator of Rho-dependent transcription termination (ROF) HRD68_14660 PF06786 Uncharacterised protein family (UPF0253) HRD68_14665 PF07152 YaeQ protein HRD68_14670 PF00472 RF-1 domain HRD68_14675 PF17185 NlpE C-terminal OB domain HRD68_14675 PF04170 NlpE N-terminal domain HRD68_14680 PF03129 Anticodon binding domain HRD68_14680 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) HRD68_14680 PF04073 Aminoacyl-tRNA editing domain HRD68_14685 PF18389 TrmO C-terminal domain HRD68_14685 PF01980 tRNA-methyltransferase O HRD68_14690 PF16358 RcsF lipoprotein HRD68_14695 PF03180 NLPA lipoprotein HRD68_14700 PF00528 Binding-protein-dependent transport system inner membrane component HRD68_14705 PF00005 ABC transporter HRD68_14705 PF09383 NIL domain HRD68_14745 PF03466 LysR substrate binding domain HRD68_14745 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HRD68_14750 PF00248 Aldo/keto reductase family HRD68_14755 PF03372 Endonuclease/Exonuclease/phosphatase family HRD68_14760 PF01464 Transglycosylase SLT domain HRD68_14760 PF01476 LysM domain HRD68_14765 PF00753 Metallo-beta-lactamase superfamily HRD68_14765 PF16123 Hydroxyacylglutathione hydrolase C-terminus HRD68_14770 PF08241 Methyltransferase domain HRD68_14775 PF00075 RNase H HRD68_14780 PF00929 Exonuclease HRD68_14790 PF04069 Substrate binding domain of ABC-type glycine betaine transport system HRD68_14795 PF00528 Binding-protein-dependent transport system inner membrane component HRD68_14800 PF00571 CBS domain HRD68_14800 PF00005 ABC transporter HRD68_14805 PF00268 Ribonucleotide reductase, small chain HRD68_14810 PF02867 Ribonucleotide reductase, barrel domain HRD68_14810 PF08343 Ribonucleotide reductase N-terminal HRD68_14810 PF00317 Ribonucleotide reductase, all-alpha domain HRD68_14815 PF07972 NrdI Flavodoxin like HRD68_14825 PF02627 Carboxymuconolactone decarboxylase family HRD68_14830 PF00392 Bacterial regulatory proteins, gntR family HRD68_14830 PF00155 Aminotransferase class I and II HRD68_14835 PF05957 Bacterial protein of unknown function (DUF883) HRD68_14840 PF06392 Acid shock protein repeat HRD68_14845 PF09400 Protein of unknown function (DUF2002) HRD68_14850 PF06711 Protein of unknown function (DUF1198) HRD68_14860 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle HRD68_14865 PF00528 Binding-protein-dependent transport system inner membrane component HRD68_14870 PF00528 Binding-protein-dependent transport system inner membrane component HRD68_14870 PF12911 N-terminal TM domain of oligopeptide transport permease C HRD68_14875 PF00005 ABC transporter HRD68_14880 PF00005 ABC transporter HRD68_14890 PF00547 Urease, gamma subunit HRD68_14895 PF00699 Urease beta subunit HRD68_14900 PF00449 Urease alpha-subunit, N-terminal domain HRD68_14900 PF01979 Amidohydrolase family HRD68_14905 PF05194 UreE urease accessory protein, C-terminal domain HRD68_14905 PF02814 UreE urease accessory protein, N-terminal domain HRD68_14910 PF01730 UreF HRD68_14915 PF02492 CobW/HypB/UreG, nucleotide-binding domain HRD68_14920 PF01774 UreD urease accessory protein HRD68_14925 PF03253 Urea transporter HRD68_14930 PF03824 High-affinity nickel-transport protein HRD68_14935 PF06411 HdeA/HdeB family HRD68_14940 PF02254 TrkA-N domain HRD68_14940 PF07885 Ion channel HRD68_14945 PF02537 CrcB-like protein, Camphor Resistance (CrcB) HRD68_14950 PF02537 CrcB-like protein, Camphor Resistance (CrcB) HRD68_14955 PF07995 Glucose / Sorbosone dehydrogenase HRD68_14960 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit HRD68_14965 PF02378 Phosphotransferase system, EIIC HRD68_14970 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit HRD68_14975 PF07883 Cupin domain HRD68_14975 PF12833 Helix-turn-helix domain HRD68_14980 PF04794 YdjC-like protein HRD68_14990 PF04542 Sigma-70 region 2 HRD68_14990 PF08281 Sigma-70, region 4 HRD68_14995 PF16220 Domain of unknown function (DUF4880) HRD68_14995 PF04773 FecR protein HRD68_15000 PF07715 TonB-dependent Receptor Plug Domain HRD68_15000 PF00593 TonB dependent receptor HRD68_15000 PF07660 Secretin and TonB N terminus short domain HRD68_15005 PF01497 Periplasmic binding protein HRD68_15010 PF01032 FecCD transport family HRD68_15015 PF01032 FecCD transport family HRD68_15020 PF00005 ABC transporter HRD68_15035 PF13411 MerR HTH family regulatory protein HRD68_15050 PF01042 Endoribonuclease L-PSP HRD68_15070 PF07728 AAA domain (dynein-related subfamily) HRD68_15075 PF01381 Helix-turn-helix HRD68_15075 PF00145 C-5 cytosine-specific DNA methylase HRD68_15120 PF01668 SmpB protein HRD68_15125 PF03364 Polyketide cyclase / dehydrase and lipid transport HRD68_15130 PF03658 RnfH family Ubiquitin HRD68_15135 PF04355 SmpA / OmlA family HRD68_15140 PF02463 RecF/RecN/SMC N terminal domain HRD68_15145 PF01513 ATP-NAD kinase HRD68_15150 PF01025 GrpE HRD68_15155 PF03167 Uracil DNA glycosylase superfamily HRD68_15160 PF01228 Glycine radical HRD68_15165 PF00270 DEAD/DEAH box helicase HRD68_15165 PF00271 Helicase conserved C-terminal domain HRD68_15170 PF05175 Methyltransferase small domain HRD68_15175 PF00890 FAD binding domain HRD68_15175 PF02910 Fumarate reductase flavoprotein C-term HRD68_15180 PF08281 Sigma-70, region 4 HRD68_15180 PF04542 Sigma-70 region 2 HRD68_15185 PF03873 Anti sigma-E protein RseA, C-terminal domain HRD68_15185 PF03872 Anti sigma-E protein RseA, N-terminal domain HRD68_15190 PF17188 MucB/RseB C-terminal domain HRD68_15190 PF03888 MucB/RseB N-terminal domain HRD68_15205 PF00679 Elongation factor G C-terminus HRD68_15205 PF06421 GTP-binding protein LepA C-terminus HRD68_15205 PF03144 Elongation factor Tu domain 2 HRD68_15205 PF00009 Elongation factor Tu GTP binding domain HRD68_15210 PF10502 Signal peptidase, peptidase S26 HRD68_15215 PF00035 Double-stranded RNA binding motif HRD68_15215 PF14622 Ribonuclease-III-like HRD68_15220 PF07650 KH domain HRD68_15220 PF01926 50S ribosome-binding GTPase HRD68_15225 PF02565 Recombination protein O C terminal HRD68_15225 PF11967 Recombination protein O N terminal HRD68_15230 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ HRD68_15235 PF01648 4'-phosphopantetheinyl transferase superfamily HRD68_15240 PF12838 4Fe-4S dicluster domain HRD68_15245 PF01418 Helix-turn-helix domain, rpiR family HRD68_15245 PF01380 SIS domain HRD68_15255 PF14437 MafB19-like deaminase HRD68_15260 PF00497 Bacterial extracellular solute-binding proteins, family 3 HRD68_15260 PF01464 Transglycosylase SLT domain HRD68_15265 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain HRD68_15265 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal HRD68_15265 PF02769 AIR synthase related protein, C-terminal domain HRD68_15275 PF00512 His Kinase A (phospho-acceptor) domain HRD68_15275 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HRD68_15280 PF13942 YfhG lipoprotein HRD68_15285 PF00072 Response regulator receiver domain HRD68_15285 PF00158 Sigma-54 interaction domain HRD68_15290 PF02540 NAD synthase HRD68_15290 PF00795 Carbon-nitrogen hydrolase HRD68_15295 PF00543 Nitrogen regulatory protein P-II HRD68_15300 PF10797 Protein of unknown function HRD68_15305 PF10941 Protein of unknown function DUF2620 HRD68_15310 PF02126 Phosphotriesterase family HRD68_15315 PF01168 Alanine racemase, N-terminal domain HRD68_15325 PF14503 YhfZ C-terminal domain HRD68_15325 PF14502 Helix-turn-helix domain HRD68_15330 PF00175 Oxidoreductase NAD-binding domain HRD68_15330 PF00042 Globin HRD68_15330 PF00970 Oxidoreductase FAD-binding domain HRD68_15335 PF00464 Serine hydroxymethyltransferase HRD68_15340 PF12832 MFS_1 like family HRD68_15345 PF00874 PRD domain HRD68_15350 PF06226 Protein of unknown function (DUF1007) HRD68_15355 PF03824 High-affinity nickel-transport protein HRD68_15360 PF00459 Inositol monophosphatase family HRD68_15365 PF00588 SpoU rRNA Methylase family HRD68_15370 PF02082 Transcriptional regulator HRD68_15375 PF00266 Aminotransferase class-V HRD68_15380 PF01592 NifU-like N terminal domain HRD68_15385 PF01521 Iron-sulphur cluster biosynthesis HRD68_15390 PF07743 HSCB C-terminal oligomerisation domain HRD68_15390 PF00226 DnaJ domain HRD68_15395 PF00012 Hsp70 protein HRD68_15400 PF00111 2Fe-2S iron-sulfur cluster binding domain HRD68_15405 PF04384 Iron-sulphur cluster assembly HRD68_15410 PF00883 Cytosol aminopeptidase family, catalytic domain HRD68_15410 PF12404 Peptidase HRD68_15415 PF14581 SseB protein C-terminal domain HRD68_15415 PF07179 SseB protein N-terminal domain HRD68_15420 PF03797 Autotransporter beta-domain HRD68_15420 PF16168 Adhesin of bacterial autotransporter system, probable stalk HRD68_15420 PF03212 Pertactin HRD68_15425 PF07703 Alpha-2-macroglobulin bait region domain HRD68_15425 PF17970 Bacterial Alpha-2-macroglobulin MG1 domain HRD68_15425 PF17973 Bacterial Alpha-2-macroglobulin MG10 domain HRD68_15425 PF17972 Bacterial Alpha-2-macroglobulin MG5 domain HRD68_15425 PF17962 Bacterial macroglobulin domain 6 HRD68_15425 PF00207 Alpha-2-macroglobulin family HRD68_15425 PF01835 MG2 domain HRD68_15425 PF11974 Bacterial alpha-2-macroglobulin MG3 domain HRD68_15425 PF07678 A-macroglobulin TED domain HRD68_15430 PF00905 Penicillin binding protein transpeptidase domain HRD68_15430 PF06832 Penicillin-Binding Protein C-terminus Family HRD68_15430 PF00912 Transglycosylase HRD68_15440 PF00334 Nucleoside diphosphate kinase HRD68_15445 PF04055 Radical SAM superfamily HRD68_15455 PF13464 Domain of unknown function (DUF4115) HRD68_15460 PF04551 GcpE protein HRD68_15465 PF13393 Histidyl-tRNA synthetase HRD68_15465 PF03129 Anticodon binding domain HRD68_15470 PF09976 Tetratricopeptide repeat-like domain HRD68_15475 PF13360 PQQ-like domain HRD68_15480 PF01926 50S ribosome-binding GTPase HRD68_15480 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal HRD68_15490 PF07191 zinc-ribbons HRD68_15495 PF02601 Exonuclease VII, large subunit HRD68_15495 PF13742 OB-fold nucleic acid binding domain HRD68_15500 PF00571 CBS domain HRD68_15500 PF00478 IMP dehydrogenase / GMP reductase domain HRD68_15505 PF00117 Glutamine amidotransferase class-I HRD68_15505 PF00958 GMP synthase C terminal domain HRD68_15505 PF02540 NAD synthase HRD68_15515 PF00486 Transcriptional regulatory protein, C terminal HRD68_15525 PF00072 Response regulator receiver domain HRD68_15525 PF00196 Bacterial regulatory proteins, luxR family HRD68_15540 PF02753 Pili assembly chaperone PapD, C-terminal domain HRD68_15540 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain HRD68_15550 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain HRD68_15550 PF02753 Pili assembly chaperone PapD, C-terminal domain HRD68_15555 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain HRD68_15555 PF02753 Pili assembly chaperone PapD, C-terminal domain HRD68_15560 PF13953 PapC C-terminal domain HRD68_15560 PF13954 PapC N-terminal domain HRD68_15560 PF00577 Outer membrane usher protein HRD68_15570 PF08543 Phosphomethylpyrimidine kinase HRD68_15585 PF00571 CBS domain HRD68_15585 PF01380 SIS domain HRD68_15590 PF08220 DeoR-like helix-turn-helix domain HRD68_15590 PF00455 DeoR C terminal sensor domain HRD68_15595 PF06923 Glucitol operon activator protein (GutM) HRD68_15600 PF00106 short chain dehydrogenase HRD68_15605 PF03829 PTS system glucitol/sorbitol-specific IIA component HRD68_15610 PF03612 Sorbitol phosphotransferase enzyme II N-terminus HRD68_15610 PF07663 Sorbitol phosphotransferase enzyme II C-terminus HRD68_15615 PF03608 PTS system enzyme II sorbitol-specific factor HRD68_15620 PF00781 Diacylglycerol kinase catalytic domain HRD68_15630 PF07411 Domain of unknown function (DUF1508) HRD68_15635 PF00486 Transcriptional regulatory protein, C terminal HRD68_15635 PF00072 Response regulator receiver domain HRD68_15640 PF00672 HAMP domain HRD68_15640 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HRD68_15640 PF00512 His Kinase A (phospho-acceptor) domain HRD68_15645 PF07690 Major Facilitator Superfamily HRD68_15650 PF00873 AcrB/AcrD/AcrF family HRD68_15655 PF00873 AcrB/AcrD/AcrF family HRD68_15660 PF13533 Biotin-lipoyl like HRD68_15670 PF13953 PapC C-terminal domain HRD68_15670 PF00577 Outer membrane usher protein HRD68_15670 PF13954 PapC N-terminal domain HRD68_15675 PF02753 Pili assembly chaperone PapD, C-terminal domain HRD68_15675 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain HRD68_15685 PF00012 Hsp70 protein HRD68_15690 PF00563 EAL domain HRD68_15690 PF00990 Diguanylate cyclase, GGDEF domain HRD68_15690 PF05231 MASE1 HRD68_15690 PF13426 PAS domain HRD68_15690 PF08447 PAS fold HRD68_15690 PF08448 PAS fold HRD68_15695 PF03448 MgtE intracellular N domain HRD68_15695 PF00571 CBS domain HRD68_15695 PF01769 Divalent cation transporter HRD68_15705 PF02541 Ppx/GppA phosphatase family HRD68_15710 PF13089 Polyphosphate kinase N-terminal domain HRD68_15710 PF02503 Polyphosphate kinase middle domain HRD68_15710 PF17941 Polyphosphate kinase C-terminal domain 1 HRD68_15710 PF13090 Polyphosphate kinase C-terminal domain 2 HRD68_15715 PF00528 Binding-protein-dependent transport system inner membrane component HRD68_15720 PF00528 Binding-protein-dependent transport system inner membrane component HRD68_15725 PF00005 ABC transporter HRD68_15730 PF13302 Acetyltransferase (GNAT) domain HRD68_15735 PF00551 Formyl transferase HRD68_15740 PF02769 AIR synthase related protein, C-terminal domain HRD68_15740 PF00586 AIR synthase related protein, N-terminal domain HRD68_15750 PF00860 Permease family HRD68_15755 PF00308 Bacterial dnaA protein HRD68_15760 PF03960 ArsC family HRD68_15765 PF01435 Peptidase family M48 HRD68_15765 PF07720 Tetratricopeptide repeat HRD68_15770 PF01594 AI-2E family transporter HRD68_15775 PF00578 AhpC/TSA family HRD68_15780 PF01842 ACT domain HRD68_15785 PF00701 Dihydrodipicolinate synthetase family HRD68_15790 PF06804 NlpB/DapX lipoprotein HRD68_15795 PF01259 SAICAR synthetase HRD68_15800 PF04228 Putative neutral zinc metallopeptidase HRD68_15805 PF04284 Protein of unknown function (DUF441) HRD68_15810 PF13718 GNAT acetyltransferase 2 HRD68_15810 PF05127 Helicase HRD68_15810 PF17176 tRNA-binding domain HRD68_15815 PF02230 Phospholipase/Carboxylesterase HRD68_15820 PF13980 Uncharacterised protein family (UPF0370) HRD68_15825 PF02557 D-alanyl-D-alanine carboxypeptidase HRD68_15830 PF07687 Peptidase dimerisation domain HRD68_15830 PF01546 Peptidase family M20/M25/M40 HRD68_15835 PF03960 ArsC family HRD68_15840 PF03466 LysR substrate binding domain HRD68_15840 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HRD68_15845 PF00196 Bacterial regulatory proteins, luxR family HRD68_15860 PF00528 Binding-protein-dependent transport system inner membrane component HRD68_15865 PF08402 TOBE domain HRD68_15865 PF00005 ABC transporter HRD68_15870 PF00873 AcrB/AcrD/AcrF family HRD68_15880 PF00072 Response regulator receiver domain HRD68_15880 PF00196 Bacterial regulatory proteins, luxR family HRD68_15885 PF12800 4Fe-4S binding domain HRD68_15885 PF13187 4Fe-4S dicluster domain HRD68_15885 PF00037 4Fe-4S binding domain HRD68_15890 PF03927 NapD protein HRD68_15895 PF01568 Molydopterin dinucleotide binding domain HRD68_15895 PF04879 Molybdopterin oxidoreductase Fe4S4 domain HRD68_15895 PF00384 Molybdopterin oxidoreductase HRD68_15895 PF10518 TAT (twin-arginine translocation) pathway signal sequence HRD68_15900 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) HRD68_15905 PF03264 NapC/NirT cytochrome c family, N-terminal region HRD68_15910 PF00293 NUDIX domain HRD68_15915 PF01515 Phosphate acetyl/butaryl transferase HRD68_15915 PF00390 Malic enzyme, N-terminal domain HRD68_15915 PF03949 Malic enzyme, NAD binding domain HRD68_15920 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 HRD68_15925 PF01218 Coproporphyrinogen III oxidase HRD68_15930 PF00583 Acetyltransferase (GNAT) family HRD68_15935 PF13407 Periplasmic binding protein domain HRD68_15940 PF00005 ABC transporter HRD68_15945 PF02653 Branched-chain amino acid transport system / permease component HRD68_15955 PF02894 Oxidoreductase family, C-terminal alpha/beta domain HRD68_15955 PF01408 Oxidoreductase family, NAD-binding Rossmann fold HRD68_15960 PF00248 Aldo/keto reductase family HRD68_15965 PF00581 Rhodanese-like domain HRD68_15970 PF00106 short chain dehydrogenase HRD68_15975 PF04076 Bacterial OB fold (BOF) protein HRD68_15980 PF06572 Protein of unknown function (DUF1131) HRD68_15985 PF04261 Dyp-type peroxidase family HRD68_15990 PF00701 Dihydrodipicolinate synthetase family HRD68_15995 PF04131 Putative N-acetylmannosamine-6-phosphate epimerase HRD68_16000 PF00480 ROK family HRD68_16005 PF04074 YhcH/YjgK/YiaL HRD68_16010 PF01380 SIS domain HRD68_16010 PF01418 Helix-turn-helix domain, rpiR family HRD68_16015 PF07690 Major Facilitator Superfamily HRD68_16025 PF00528 Binding-protein-dependent transport system inner membrane component HRD68_16030 PF00528 Binding-protein-dependent transport system inner membrane component HRD68_16035 PF00005 ABC transporter HRD68_16040 PF00291 Pyridoxal-phosphate dependent enzyme HRD68_16050 PF02563 Polysaccharide biosynthesis/export protein HRD68_16050 PF10531 SLBB domain HRD68_16055 PF05159 Capsule polysaccharide biosynthesis protein HRD68_16060 PF05159 Capsule polysaccharide biosynthesis protein HRD68_16065 PF00535 Glycosyl transferase family 2 HRD68_16075 PF11380 Stealth protein CR2, conserved region 2 HRD68_16075 PF17101 Stealth protein CR1, conserved region 1 HRD68_16080 PF00005 ABC transporter HRD68_16085 PF01061 ABC-2 type transporter HRD68_16090 PF00005 ABC transporter HRD68_16090 PF12704 MacB-like periplasmic core domain HRD68_16090 PF02687 FtsX-like permease family HRD68_16095 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion HRD68_16100 PF00486 Transcriptional regulatory protein, C terminal HRD68_16100 PF00072 Response regulator receiver domain HRD68_16105 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HRD68_16105 PF00672 HAMP domain HRD68_16105 PF16527 Two-component sensor protein CpxA, periplasmic domain HRD68_16105 PF00512 His Kinase A (phospho-acceptor) domain HRD68_16110 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 HRD68_16115 PF00391 PEP-utilising enzyme, mobile domain HRD68_16115 PF05524 PEP-utilising enzyme, N-terminal HRD68_16115 PF02896 PEP-utilising enzyme, TIM barrel domain HRD68_16120 PF00381 PTS HPr component phosphorylation site HRD68_16125 PF00291 Pyridoxal-phosphate dependent enzyme HRD68_16135 PF04354 ZipA, C-terminal FtsZ-binding domain HRD68_16140 PF01653 NAD-dependent DNA ligase adenylation domain HRD68_16140 PF00533 BRCA1 C Terminus (BRCT) domain HRD68_16140 PF03120 NAD-dependent DNA ligase OB-fold domain HRD68_16140 PF03119 NAD-dependent DNA ligase C4 zinc finger domain HRD68_16140 PF12826 Helix-hairpin-helix motif HRD68_16145 PF12843 Putative quorum-sensing-regulated virulence factor HRD68_16170 PF00749 tRNA synthetases class I (E and Q), catalytic domain HRD68_16205 PF07662 Na+ dependent nucleoside transporter C-terminus HRD68_16205 PF07670 Nucleoside recognition HRD68_16205 PF01773 Na+ dependent nucleoside transporter N-terminus HRD68_16215 PF01566 Natural resistance-associated macrophage protein HRD68_16225 PF00248 Aldo/keto reductase family HRD68_16230 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain HRD68_16230 PF00205 Thiamine pyrophosphate enzyme, central domain HRD68_16230 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain HRD68_16235 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HRD68_16235 PF03466 LysR substrate binding domain HRD68_16245 PF02685 Glucokinase HRD68_16250 PF06296 RelE toxin of RelE / RelB toxin-antitoxin system HRD68_16260 PF07690 Major Facilitator Superfamily HRD68_16265 PF00072 Response regulator receiver domain HRD68_16265 PF04397 LytTr DNA-binding domain HRD68_16270 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HRD68_16270 PF07694 5TMR of 5TMR-LYT HRD68_16270 PF06580 Histidine kinase HRD68_16275 PF07350 Protein of unknown function (DUF1479) HRD68_16285 PF00155 Aminotransferase class I and II HRD68_16290 PF01292 Prokaryotic cytochrome b561 HRD68_16305 PF02378 Phosphotransferase system, EIIC HRD68_16305 PF00367 phosphotransferase system, EIIB HRD68_16305 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 HRD68_16310 PF00232 Glycosyl hydrolase family 1 HRD68_16320 PF00300 Histidine phosphatase superfamily (branch 1) HRD68_16325 PF03783 Curli production assembly/transport component CsgG HRD68_16335 PF05643 Putative bacterial lipoprotein (DUF799) HRD68_16350 PF04976 DMSO reductase anchor subunit (DmsC) HRD68_16355 PF13247 4Fe-4S dicluster domain HRD68_16355 PF12800 4Fe-4S binding domain HRD68_16360 PF01568 Molydopterin dinucleotide binding domain HRD68_16360 PF04879 Molybdopterin oxidoreductase Fe4S4 domain HRD68_16360 PF00384 Molybdopterin oxidoreductase HRD68_16365 PF00874 PRD domain HRD68_16365 PF03123 CAT RNA binding domain HRD68_16375 PF13406 Transglycosylase SLT domain HRD68_16380 PF00324 Amino acid permease HRD68_16385 PF07969 Amidohydrolase family HRD68_16395 PF07690 Major Facilitator Superfamily HRD68_16400 PF02405 Permease MlaE HRD68_16405 PF00005 ABC transporter HRD68_16420 PF01292 Prokaryotic cytochrome b561 HRD68_16425 PF04264 YceI-like domain HRD68_16430 PF00356 Bacterial regulatory proteins, lacI family HRD68_16435 PF02378 Phosphotransferase system, EIIC HRD68_16435 PF00367 phosphotransferase system, EIIB HRD68_16440 PF00232 Glycosyl hydrolase family 1 HRD68_16450 PF03551 Transcriptional regulator PadR-like family HRD68_16455 PF03831 PhnA domain HRD68_16455 PF08274 PhnA Zinc-Ribbon HRD68_16460 PF13649 Methyltransferase domain HRD68_16465 PF00282 Pyridoxal-dependent decarboxylase conserved domain HRD68_16470 PF13520 Amino acid permease HRD68_16485 PF01914 MarC family integral membrane protein HRD68_16495 PF00512 His Kinase A (phospho-acceptor) domain HRD68_16495 PF01627 Hpt domain HRD68_16495 PF00072 Response regulator receiver domain HRD68_16495 PF00497 Bacterial extracellular solute-binding proteins, family 3 HRD68_16495 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HRD68_16500 PF00196 Bacterial regulatory proteins, luxR family HRD68_16500 PF00072 Response regulator receiver domain HRD68_16505 PF02665 Nitrate reductase gamma subunit HRD68_16510 PF02613 Nitrate reductase delta subunit HRD68_16515 PF14711 Respiratory nitrate reductase beta C-terminal HRD68_16515 PF13247 4Fe-4S dicluster domain HRD68_16520 PF01568 Molydopterin dinucleotide binding domain HRD68_16520 PF14710 Respiratory nitrate reductase alpha N-terminal HRD68_16520 PF00384 Molybdopterin oxidoreductase HRD68_16525 PF07690 Major Facilitator Superfamily HRD68_16530 PF00072 Response regulator receiver domain HRD68_16530 PF00196 Bacterial regulatory proteins, luxR family HRD68_16535 PF03264 NapC/NirT cytochrome c family, N-terminal region HRD68_16540 PF01568 Molydopterin dinucleotide binding domain HRD68_16540 PF18364 Molybdopterin oxidoreductase N-terminal domain HRD68_16540 PF00384 Molybdopterin oxidoreductase HRD68_16600 PF00436 Single-strand binding protein family HRD68_16685 PF03796 DnaB-like helicase C terminal domain HRD68_16685 PF00772 DnaB-like helicase N terminal domain HRD68_16745 PF04971 Bacteriophage P21 holin S HRD68_16750 PF00959 Phage lysozyme HRD68_16920 PF14659 Phage integrase, N-terminal SAM-like domain HRD68_16920 PF13356 Arm DNA-binding domain HRD68_16920 PF00589 Phage integrase family HRD68_16930 PF01226 Formate/nitrite transporter HRD68_16935 PF00005 ABC transporter HRD68_16940 PF03379 CcmB protein HRD68_16945 PF01578 Cytochrome C assembly protein HRD68_16950 PF04995 Heme exporter protein D (CcmD) HRD68_16955 PF03100 CcmE HRD68_16960 PF01578 Cytochrome C assembly protein HRD68_16960 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal HRD68_16965 PF08534 Redoxin HRD68_16970 PF03918 Cytochrome C biogenesis protein HRD68_16975 PF03918 Cytochrome C biogenesis protein HRD68_16980 PF04333 MlaA lipoprotein HRD68_16995 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) HRD68_17000 PF04175 Protein of unknown function (DUF406) HRD68_17005 PF00108 Thiolase, N-terminal domain HRD68_17005 PF02803 Thiolase, C-terminal domain HRD68_17010 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain HRD68_17010 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain HRD68_17010 PF00378 Enoyl-CoA hydratase/isomerase HRD68_17015 PF00300 Histidine phosphatase superfamily (branch 1) HRD68_17025 PF01713 Smr domain HRD68_17030 PF05175 Methyltransferase small domain HRD68_17035 PF01264 Chorismate synthase HRD68_17040 PF03411 Penicillin-insensitive murein endopeptidase HRD68_17045 PF01925 Sulfite exporter TauE/SafE HRD68_17050 PF04315 Elongation factor P hydroxylase HRD68_17055 PF08891 YfcL protein HRD68_17060 PF05430 S-adenosyl-L-methionine-dependent methyltransferase HRD68_17060 PF01266 FAD dependent oxidoreductase HRD68_17065 PF00109 Beta-ketoacyl synthase, N-terminal domain HRD68_17065 PF02801 Beta-ketoacyl synthase, C-terminal domain HRD68_17070 PF00990 Diguanylate cyclase, GGDEF domain HRD68_17070 PF00072 Response regulator receiver domain HRD68_17075 PF01177 Asp/Glu/Hydantoin racemase HRD68_17080 PF00328 Histidine phosphatase superfamily (branch 2) HRD68_17085 PF03600 Citrate transporter HRD68_17100 PF11412 Disulphide bond corrector protein DsbC HRD68_17100 PF02683 Cytochrome C biogenesis protein transmembrane region HRD68_17110 PF00578 AhpC/TSA family HRD68_17130 PF11890 Domain of unknown function (DUF3410) HRD68_17130 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain HRD68_17130 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain HRD68_17135 PF02774 Semialdehyde dehydrogenase, dimerisation domain HRD68_17135 PF01118 Semialdehyde dehydrogenase, NAD binding domain HRD68_17140 PF01416 tRNA pseudouridine synthase HRD68_17145 PF09335 SNARE associated Golgi protein HRD68_17150 PF01039 Carboxyl transferase domain HRD68_17150 PF17848 Acetyl-coA carboxylase zinc finger domain HRD68_17155 PF08245 Mur ligase middle domain HRD68_17155 PF02875 Mur ligase family, glutamate ligase domain HRD68_17160 PF05036 Sporulation related domain HRD68_17165 PF02674 Colicin V production protein HRD68_17170 PF00156 Phosphoribosyl transferase domain HRD68_17175 PF02441 Flavoprotein HRD68_17180 PF00497 Bacterial extracellular solute-binding proteins, family 3 HRD68_17185 PF00528 Binding-protein-dependent transport system inner membrane component HRD68_17190 PF00528 Binding-protein-dependent transport system inner membrane component HRD68_17195 PF00005 ABC transporter HRD68_17200 PF08338 Domain of unknown function (DUF1731) HRD68_17200 PF01370 NAD dependent epimerase/dehydratase family HRD68_17210 PF12850 Calcineurin-like phosphoesterase superfamily domain HRD68_17215 PF00293 NUDIX domain HRD68_17225 PF10282 Lactonase, 7-bladed beta-propeller HRD68_17230 PF00202 Aminotransferase class-III HRD68_17235 PF04055 Radical SAM superfamily HRD68_17235 PF06968 Biotin and Thiamin Synthesis associated domain HRD68_17240 PF00155 Aminotransferase class I and II HRD68_17245 PF08241 Methyltransferase domain HRD68_17255 PF00005 ABC transporter HRD68_17260 PF00271 Helicase conserved C-terminal domain HRD68_17260 PF17757 UvrB interaction domain HRD68_17260 PF04851 Type III restriction enzyme, res subunit HRD68_17260 PF12344 Ultra-violet resistance protein B HRD68_17260 PF02151 UvrB/uvrC motif HRD68_17265 PF09905 DNA-binding protein VF530 HRD68_17270 PF01933 Uncharacterised protein family UPF0052 HRD68_17275 PF04055 Radical SAM superfamily HRD68_17275 PF06463 Molybdenum Cofactor Synthesis C HRD68_17280 PF01967 MoaC family HRD68_17285 PF02597 ThiS family HRD68_17290 PF02391 MoaE protein HRD68_17295 PF01027 Inhibitor of apoptosis-promoting Bax1 HRD68_17300 PF00593 TonB dependent receptor HRD68_17300 PF07715 TonB-dependent Receptor Plug Domain HRD68_17305 PF00756 Putative esterase HRD68_17305 PF11806 Domain of unknown function (DUF3327) HRD68_17310 PF03621 MbtH-like protein HRD68_17315 PF13193 AMP-binding enzyme C-terminal domain HRD68_17315 PF00550 Phosphopantetheine attachment site HRD68_17315 PF00668 Condensation domain HRD68_17315 PF00501 AMP-binding enzyme HRD68_17315 PF00975 Thioesterase domain HRD68_17320 PF05977 Transmembrane secretion effector HRD68_17325 PF01497 Periplasmic binding protein HRD68_17330 PF00425 chorismate binding enzyme HRD68_17335 PF00501 AMP-binding enzyme HRD68_17335 PF13193 AMP-binding enzyme C-terminal domain HRD68_17340 PF00550 Phosphopantetheine attachment site HRD68_17340 PF00857 Isochorismatase family HRD68_17360 PF00005 ABC transporter HRD68_17365 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion HRD68_17370 PF09209 Tetracyclin repressor-like, C-terminal domain HRD68_17370 PF00440 Bacterial regulatory proteins, tetR family HRD68_17375 PF00270 DEAD/DEAH box helicase HRD68_17375 PF00271 Helicase conserved C-terminal domain HRD68_17380 PF01207 Dihydrouridine synthase (Dus) HRD68_17390 PF00768 D-alanyl-D-alanine carboxypeptidase HRD68_17395 PF09330 D-lactate dehydrogenase, membrane binding HRD68_17395 PF01565 FAD binding domain HRD68_17400 PF01928 CYTH domain HRD68_17405 PF01844 HNH endonuclease HRD68_17415 PF04226 Transglycosylase associated protein HRD68_17420 PF00005 ABC transporter HRD68_17430 PF00528 Binding-protein-dependent transport system inner membrane component HRD68_17435 PF00528 Binding-protein-dependent transport system inner membrane component HRD68_17440 PF07308 Protein of unknown function (DUF1456) HRD68_17450 PF02653 Branched-chain amino acid transport system / permease component HRD68_17455 PF02653 Branched-chain amino acid transport system / permease component HRD68_17465 PF00005 ABC transporter HRD68_17470 PF00581 Rhodanese-like domain HRD68_17485 PF04069 Substrate binding domain of ABC-type glycine betaine transport system HRD68_17490 PF00528 Binding-protein-dependent transport system inner membrane component HRD68_17495 PF00005 ABC transporter HRD68_17500 PF00528 Binding-protein-dependent transport system inner membrane component HRD68_17510 PF13520 Amino acid permease HRD68_17515 PF01276 Orn/Lys/Arg decarboxylase, major domain HRD68_17515 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain HRD68_17515 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain HRD68_17525 PF00892 EamA-like transporter family HRD68_17530 PF00267 Gram-negative porin HRD68_17535 PF06733 DEAD_2 HRD68_17535 PF13307 Helicase C-terminal domain HRD68_17540 PF00230 Major intrinsic protein HRD68_17545 PF02885 Glycosyl transferase family, helical bundle domain HRD68_17555 PF07338 Protein of unknown function (DUF1471) HRD68_17560 PF01613 Flavin reductase like domain HRD68_17565 PF05971 RNA methyltransferase HRD68_17570 PF13426 PAS domain HRD68_17570 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HRD68_17570 PF08447 PAS fold HRD68_17575 PF00005 ABC transporter HRD68_17580 PF00528 Binding-protein-dependent transport system inner membrane component HRD68_17585 PF00497 Bacterial extracellular solute-binding proteins, family 3 HRD68_17590 PF01258 Prokaryotic dksA/traR C4-type zinc finger HRD68_17595 PF00210 Ferritin-like domain HRD68_17600 PF13847 Methyltransferase domain HRD68_17615 PF02469 Fasciclin domain HRD68_17625 PF00892 EamA-like transporter family HRD68_17630 PF13505 Outer membrane protein beta-barrel domain HRD68_17650 PF00005 ABC transporter HRD68_17650 PF12848 ABC transporter HRD68_17655 PF00899 ThiF family HRD68_17660 PF00994 Probable molybdopterin binding domain HRD68_17660 PF03454 MoeA C-terminal region (domain IV) HRD68_17660 PF03453 MoeA N-terminal region (domain I and II) HRD68_17670 PF00083 Sugar (and other) transporter HRD68_17675 PF00756 Putative esterase HRD68_17680 PF08240 Alcohol dehydrogenase GroES-like domain HRD68_17680 PF00107 Zinc-binding dehydrogenase HRD68_17685 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HRD68_17685 PF03466 LysR substrate binding domain HRD68_17690 PF06779 Uncharacterised MFS-type transporter YbfB HRD68_17695 PF01227 GTP cyclohydrolase I HRD68_17700 PF04235 Protein of unknown function (DUF418) HRD68_17705 PF00356 Bacterial regulatory proteins, lacI family HRD68_17710 PF13407 Periplasmic binding protein domain HRD68_17715 PF00005 ABC transporter HRD68_17720 PF02653 Branched-chain amino acid transport system / permease component HRD68_17725 PF01226 Formate/nitrite transporter HRD68_17730 PF00158 Sigma-54 interaction domain HRD68_17730 PF01590 GAF domain HRD68_17735 PF01568 Molydopterin dinucleotide binding domain HRD68_17735 PF04879 Molybdopterin oxidoreductase Fe4S4 domain HRD68_17735 PF00384 Molybdopterin oxidoreductase HRD68_17740 PF13247 4Fe-4S dicluster domain HRD68_17740 PF12800 4Fe-4S binding domain HRD68_17745 PF01750 Hydrogenase maturation protease HRD68_17750 PF07450 Formate hydrogenlyase maturation protein HycH HRD68_17755 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit HRD68_17760 PF12838 4Fe-4S dicluster domain HRD68_17765 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit HRD68_17765 PF00374 Nickel-dependent hydrogenase HRD68_17765 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit HRD68_17770 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus HRD68_17770 PF00361 Proton-conducting membrane transporter HRD68_17775 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L HRD68_17780 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus HRD68_17780 PF00361 Proton-conducting membrane transporter HRD68_17785 PF00146 NADH dehydrogenase HRD68_17790 PF00361 Proton-conducting membrane transporter HRD68_17795 PF12798 4Fe-4S binding domain HRD68_17795 PF00037 4Fe-4S binding domain HRD68_17800 PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA HRD68_17805 PF01455 HupF/HypC family HRD68_17810 PF02698 DUF218 domain HRD68_17815 PF03949 Malic enzyme, NAD binding domain HRD68_17815 PF00390 Malic enzyme, N-terminal domain HRD68_17820 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region HRD68_17820 PF08211 Cytidine and deoxycytidylate deaminase zinc-binding region HRD68_17825 PF04172 LrgB-like family HRD68_17830 PF03788 LrgA family HRD68_17835 PF07690 Major Facilitator Superfamily HRD68_17850 PF01588 Putative tRNA binding domain HRD68_17850 PF09334 tRNA synthetases class I (M) HRD68_17855 PF10609 NUBPL iron-transfer P-loop NTPase HRD68_17860 PF00485 Phosphoribulokinase / Uridine kinase family HRD68_17865 PF00692 dUTPase HRD68_17870 PF05170 AsmA family HRD68_17875 PF03606 C4-dicarboxylate anaerobic carrier HRD68_17880 PF00571 CBS domain HRD68_17880 PF03471 Transporter associated domain HRD68_17880 PF03741 Integral membrane protein TerC family HRD68_17885 PF00483 Nucleotidyl transferase HRD68_17885 PF01050 Mannose-6-phosphate isomerase HRD68_17890 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III HRD68_17890 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain HRD68_17890 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II HRD68_17890 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I HRD68_17900 PF14524 Wzt C-terminal domain HRD68_17900 PF00005 ABC transporter HRD68_17905 PF08241 Methyltransferase domain HRD68_17915 PF16363 GDP-mannose 4,6 dehydratase HRD68_17920 PF16363 GDP-mannose 4,6 dehydratase HRD68_17930 PF00534 Glycosyl transferases group 1 HRD68_17930 PF13439 Glycosyltransferase Family 4 HRD68_17935 PF00483 Nucleotidyl transferase HRD68_17940 PF00483 Nucleotidyl transferase HRD68_17945 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain HRD68_17945 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase HRD68_17950 PF01502 Phosphoribosyl-AMP cyclohydrolase HRD68_17950 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase HRD68_17955 PF00977 Histidine biosynthesis protein HRD68_17960 PF00977 Histidine biosynthesis protein HRD68_17965 PF00117 Glutamine amidotransferase class-I HRD68_17970 PF00475 Imidazoleglycerol-phosphate dehydratase HRD68_17975 PF00155 Aminotransferase class I and II HRD68_17980 PF00815 Histidinol dehydrogenase HRD68_17985 PF08029 HisG, C-terminal domain HRD68_17985 PF01634 ATP phosphoribosyltransferase HRD68_17995 PF01370 NAD dependent epimerase/dehydratase family HRD68_18000 PF02653 Branched-chain amino acid transport system / permease component HRD68_18005 PF00005 ABC transporter HRD68_18010 PF00465 Iron-containing alcohol dehydrogenase HRD68_18015 PF13520 Amino acid permease HRD68_18020 PF00929 Exonuclease HRD68_18020 PF08411 Exonuclease C-terminal HRD68_18030 PF04632 Fusaric acid resistance protein family HRD68_18035 PF04363 Protein of unknown function (DUF496) HRD68_18040 PF02653 Branched-chain amino acid transport system / permease component HRD68_18045 PF02653 Branched-chain amino acid transport system / permease component HRD68_18050 PF00005 ABC transporter HRD68_18055 PF13407 Periplasmic binding protein domain HRD68_18060 PF00288 GHMP kinases N terminal domain HRD68_18065 PF00155 Aminotransferase class I and II HRD68_18070 PF10414 Sirohaem synthase dimerisation region HRD68_18070 PF14824 Sirohaem biosynthesis protein central HRD68_18070 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases HRD68_18075 PF00871 Acetokinase family HRD68_18080 PF10662 Ethanolamine utilisation - propanediol utilisation HRD68_18085 PF00936 BMC domain HRD68_18095 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit HRD68_18095 PF13237 4Fe-4S dicluster domain HRD68_18095 PF10531 SLBB domain HRD68_18095 PF13375 RnfC Barrel sandwich hybrid domain HRD68_18100 PF00465 Iron-containing alcohol dehydrogenase HRD68_18105 PF00171 Aldehyde dehydrogenase family HRD68_18110 PF01923 Cobalamin adenosyltransferase HRD68_18115 PF03319 Ethanolamine utilisation protein EutN/carboxysome HRD68_18125 PF06130 Phosphate propanoyltransferase HRD68_18135 PF00936 BMC domain HRD68_18145 PF18427 DD-reactivating factor swiveling domain HRD68_18145 PF08841 Diol dehydratase reactivase ATPase-like domain HRD68_18150 PF02287 Dehydratase small subunit HRD68_18155 PF02288 Dehydratase medium subunit HRD68_18160 PF02286 Dehydratase large subunit HRD68_18165 PF00936 BMC domain HRD68_18170 PF00936 BMC domain HRD68_18175 PF00230 Major intrinsic protein HRD68_18180 PF12833 Helix-turn-helix domain HRD68_18180 PF10114 Sensory domain found in PocR HRD68_18185 PF07685 CobB/CobQ-like glutamine amidotransferase domain HRD68_18185 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain HRD68_18190 PF03186 CobD/Cbib protein HRD68_18195 PF02570 Precorrin-8X methylmutase HRD68_18200 PF01888 CbiD HRD68_18205 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases HRD68_18210 PF05175 Methyltransferase small domain HRD68_18215 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases HRD68_18220 PF11761 Cobalamin biosynthesis central region HRD68_18220 PF11760 Cobalamin synthesis G N-terminal HRD68_18220 PF01890 Cobalamin synthesis G C-terminus HRD68_18225 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases HRD68_18230 PF02571 Precorrin-6x reductase CbiJ/CobK HRD68_18235 PF06180 Cobalt chelatase (CbiK) HRD68_18240 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases HRD68_18245 PF01891 Cobalt uptake substrate-specific transmembrane region HRD68_18250 PF02553 Cobalt transport protein component CbiN HRD68_18255 PF02361 Cobalt transport protein HRD68_18260 PF00005 ABC transporter HRD68_18265 PF07685 CobB/CobQ-like glutamine amidotransferase domain HRD68_18270 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase HRD68_18275 PF02654 Cobalamin-5-phosphate synthase HRD68_18280 PF00300 Histidine phosphatase superfamily (branch 1) HRD68_18285 PF02277 Phosphoribosyltransferase HRD68_18290 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HRD68_18290 PF03466 LysR substrate binding domain HRD68_18300 PF01048 Phosphorylase superfamily HRD68_18305 PF03825 Nucleoside H+ symporter HRD68_18310 PF00764 Arginosuccinate synthase HRD68_18315 PF01554 MatE HRD68_18320 PF00072 Response regulator receiver domain HRD68_18320 PF01584 CheW-like domain HRD68_18325 PF00106 short chain dehydrogenase HRD68_18330 PF07804 HipA-like C-terminal domain HRD68_18335 PF13657 HipA N-terminal domain HRD68_18345 PF00440 Bacterial regulatory proteins, tetR family HRD68_18355 PF00873 AcrB/AcrD/AcrF family HRD68_18375 PF00849 RNA pseudouridylate synthase HRD68_18375 PF01479 S4 domain HRD68_18380 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain HRD68_18380 PF02753 Pili assembly chaperone PapD, C-terminal domain HRD68_18390 PF13953 PapC C-terminal domain HRD68_18390 PF13954 PapC N-terminal domain HRD68_18390 PF00577 Outer membrane usher protein HRD68_18395 PF02753 Pili assembly chaperone PapD, C-terminal domain HRD68_18395 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain HRD68_18405 PF00512 His Kinase A (phospho-acceptor) domain HRD68_18405 PF01627 Hpt domain HRD68_18405 PF00989 PAS fold HRD68_18405 PF00072 Response regulator receiver domain HRD68_18405 PF00497 Bacterial extracellular solute-binding proteins, family 3 HRD68_18405 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HRD68_18410 PF00072 Response regulator receiver domain HRD68_18410 PF00196 Bacterial regulatory proteins, luxR family HRD68_18420 PF08402 TOBE domain HRD68_18420 PF00005 ABC transporter HRD68_18425 PF00528 Binding-protein-dependent transport system inner membrane component HRD68_18435 PF07690 Major Facilitator Superfamily HRD68_18440 PF05231 MASE1 HRD68_18440 PF07730 Histidine kinase HRD68_18440 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HRD68_18445 PF00072 Response regulator receiver domain HRD68_18445 PF00196 Bacterial regulatory proteins, luxR family HRD68_18450 PF12431 Transcriptional regulator HRD68_18450 PF00072 Response regulator receiver domain HRD68_18455 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain HRD68_18455 PF17203 Single cache domain 3 HRD68_18455 PF00989 PAS fold HRD68_18455 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HRD68_18460 PF08218 Citrate lyase ligase C-terminal domain HRD68_18465 PF06857 Malonate decarboxylase delta subunit (MdcD) HRD68_18470 PF03328 HpcH/HpaI aldolase/citrate lyase family HRD68_18475 PF04223 Citrate lyase, alpha subunit (CitF) HRD68_18480 PF03802 Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase HRD68_18485 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase HRD68_18490 PF00939 Sodium:sulfate symporter transmembrane region HRD68_18495 PF17837 4'-phosphopantetheinyl transferase N-terminal domain HRD68_18495 PF01648 4'-phosphopantetheinyl transferase superfamily HRD68_18505 PF07687 Peptidase dimerisation domain HRD68_18505 PF01546 Peptidase family M20/M25/M40 HRD68_18510 PF07670 Nucleoside recognition HRD68_18515 PF07670 Nucleoside recognition HRD68_18525 PF00939 Sodium:sulfate symporter transmembrane region HRD68_18530 PF03737 Aldolase/RraA HRD68_18535 PF02585 GlcNAc-PI de-N-acetylase HRD68_18540 PF03466 LysR substrate binding domain HRD68_18540 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HRD68_18550 PF09831 Uncharacterized protein conserved in bacteria (DUF2058) HRD68_18555 PF00849 RNA pseudouridylate synthase HRD68_18585 PF00132 Bacterial transferase hexapeptide (six repeats) HRD68_18590 PF01590 GAF domain HRD68_18590 PF00158 Sigma-54 interaction domain HRD68_18595 PF00258 Flavodoxin HRD68_18595 PF00301 Rubredoxin HRD68_18595 PF00753 Metallo-beta-lactamase superfamily HRD68_18600 PF07992 Pyridine nucleotide-disulphide oxidoreductase HRD68_18600 PF18113 Rubredoxin binding C-terminal domain HRD68_18605 PF09313 Domain of unknown function (DUF1971) HRD68_18615 PF01037 Lrp/AsnC ligand binding domain HRD68_18630 PF03466 LysR substrate binding domain HRD68_18630 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HRD68_18660 PF06167 Glucose-regulated metallo-peptidase M90 HRD68_18665 PF00328 Histidine phosphatase superfamily (branch 2) HRD68_18670 PF14001 YdfZ protein HRD68_18680 PF01037 Lrp/AsnC ligand binding domain HRD68_18685 PF10777 Inner membrane protein YlaC HRD68_18690 PF00698 Acyl transferase domain HRD68_18690 PF00109 Beta-ketoacyl synthase, N-terminal domain HRD68_18690 PF02801 Beta-ketoacyl synthase, C-terminal domain HRD68_18690 PF14765 Polyketide synthase dehydratase HRD68_18690 PF08240 Alcohol dehydrogenase GroES-like domain HRD68_18690 PF00107 Zinc-binding dehydrogenase HRD68_18690 PF16197 Ketoacyl-synthetase C-terminal extension HRD68_18690 PF00550 Phosphopantetheine attachment site HRD68_18690 PF08659 KR domain HRD68_18695 PF02929 Beta galactosidase small chain HRD68_18695 PF02837 Glycosyl hydrolases family 2, sugar binding domain HRD68_18695 PF02836 Glycosyl hydrolases family 2, TIM barrel domain HRD68_18695 PF16353 Domain of unknown function(DUF4981) HRD68_18695 PF00703 Glycosyl hydrolases family 2 HRD68_18700 PF00356 Bacterial regulatory proteins, lacI family HRD68_18705 PF00313 'Cold-shock' DNA-binding domain HRD68_18710 PF10781 Dextransucrase DSRB HRD68_18715 PF00672 HAMP domain HRD68_18715 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HRD68_18715 PF02203 Tar ligand binding domain homologue HRD68_18720 PF02308 MgtC family HRD68_18725 PF00690 Cation transporter/ATPase, N-terminus HRD68_18725 PF00689 Cation transporting ATPase, C-terminus HRD68_18730 PF16884 N-terminal domain of oxidoreductase HRD68_18730 PF00107 Zinc-binding dehydrogenase HRD68_18735 PF00582 Universal stress protein family HRD68_18740 PF05247 Flagellar transcriptional activator (FlhD) HRD68_18745 PF05280 Flagellar transcriptional activator (FlhC) HRD68_18750 PF01618 MotA/TolQ/ExbB proton channel family HRD68_18755 PF13677 Membrane MotB of proton-channel complex MotA/MotB HRD68_18755 PF00691 OmpA family HRD68_18760 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HRD68_18760 PF02895 Signal transducing histidine kinase, homodimeric domain HRD68_18760 PF09078 CheY binding HRD68_18760 PF01584 CheW-like domain HRD68_18760 PF01627 Hpt domain HRD68_18765 PF01584 CheW-like domain HRD68_18770 PF00672 HAMP domain HRD68_18770 PF02203 Tar ligand binding domain homologue HRD68_18770 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HRD68_18775 PF02203 Tar ligand binding domain homologue HRD68_18775 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HRD68_18775 PF00672 HAMP domain HRD68_18780 PF03705 CheR methyltransferase, all-alpha domain HRD68_18780 PF01739 CheR methyltransferase, SAM binding domain HRD68_18785 PF00072 Response regulator receiver domain HRD68_18785 PF01339 CheB methylesterase HRD68_18790 PF00072 Response regulator receiver domain HRD68_18795 PF04344 Chemotaxis phosphatase, CheZ HRD68_18800 PF01312 FlhB HrpN YscU SpaS Family HRD68_18805 PF00771 FHIPEP family HRD68_18810 PF06366 Flagellar protein FlhE HRD68_18820 PF05130 FlgN protein HRD68_18825 PF04316 Anti-sigma-28 factor, FlgM HRD68_18830 PF13144 Chaperone for flagella basal body P-ring formation HRD68_18830 PF17656 FlgA N-terminal domain HRD68_18835 PF00460 Flagella basal body rod protein HRD68_18840 PF00460 Flagella basal body rod protein HRD68_18840 PF06429 Flagellar basal body rod FlgEFG protein C-terminal HRD68_18845 PF13860 FlgD Ig-like domain HRD68_18845 PF13861 FlgD Tudor-like domain HRD68_18845 PF03963 Flagellar hook capping protein - N-terminal region HRD68_18850 PF06429 Flagellar basal body rod FlgEFG protein C-terminal HRD68_18850 PF00460 Flagella basal body rod protein HRD68_18850 PF07559 Flagellar basal body protein FlaE HRD68_18855 PF00460 Flagella basal body rod protein HRD68_18855 PF06429 Flagellar basal body rod FlgEFG protein C-terminal HRD68_18860 PF00460 Flagella basal body rod protein HRD68_18860 PF06429 Flagellar basal body rod FlgEFG protein C-terminal HRD68_18865 PF02107 Flagellar L-ring protein HRD68_18870 PF02119 Flagellar P-ring protein HRD68_18875 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase HRD68_18875 PF10135 Rod binding protein HRD68_18880 PF06429 Flagellar basal body rod FlgEFG protein C-terminal HRD68_18880 PF00460 Flagella basal body rod protein HRD68_18885 PF00669 Bacterial flagellin N-terminal helical region HRD68_18890 PF01311 Bacterial export proteins, family 1 HRD68_18895 PF01313 Bacterial export proteins, family 3 HRD68_18900 PF00813 FliP family HRD68_18905 PF04347 Flagellar biosynthesis protein, FliO HRD68_18910 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term HRD68_18910 PF16973 Flagellar motor switch protein FliN N-terminal HRD68_18915 PF02154 Flagellar motor switch protein FliM HRD68_18915 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term HRD68_18920 PF03748 Flagellar basal body-associated protein FliL HRD68_18925 PF02120 Flagellar hook-length control protein FliK HRD68_18930 PF02050 Flagellar FliJ protein HRD68_18935 PF18269 T3SS EscN ATPase C-terminal domain HRD68_18935 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain HRD68_18940 PF02108 Flagellar assembly protein FliH HRD68_18945 PF01706 FliG C-terminal domain HRD68_18945 PF14841 FliG middle domain HRD68_18945 PF14842 FliG N-terminal domain HRD68_18950 PF01514 Secretory protein of YscJ/FliF family HRD68_18950 PF08345 Flagellar M-ring protein C-terminal HRD68_18955 PF02049 Flagellar hook-basal body complex protein FliE HRD68_18960 PF00730 HhH-GPD superfamily base excision DNA repair protein HRD68_18965 PF01966 HD domain HRD68_18970 PF12833 Helix-turn-helix domain HRD68_18975 PF05400 Flagellar protein FliT HRD68_18980 PF02561 Flagellar protein FliS HRD68_18985 PF02465 Flagellar hook-associated protein 2 N-terminus HRD68_18985 PF07196 Flagellin hook IN motif HRD68_18985 PF07195 Flagellar hook-associated protein 2 C-terminus HRD68_18990 PF00669 Bacterial flagellin N-terminal helical region HRD68_18990 PF00700 Bacterial flagellin C-terminal helical region HRD68_19000 PF04545 Sigma-70, region 4 HRD68_19000 PF04542 Sigma-70 region 2 HRD68_19000 PF04539 Sigma-70 region 3 HRD68_19005 PF02899 Phage integrase, N-terminal SAM-like domain HRD68_19010 PF00291 Pyridoxal-phosphate dependent enzyme HRD68_19040 PF14850 DNA-binding domain of Proline dehydrogenase HRD68_19040 PF00171 Aldehyde dehydrogenase family HRD68_19040 PF01619 Proline dehydrogenase HRD68_19040 PF18327 Proline utilization A proline dehydrogenase N-terminal domain HRD68_19045 PF00474 Sodium:solute symporter family HRD68_19050 PF03239 Iron permease FTR1 family HRD68_19055 PF13473 Cupredoxin-like domain HRD68_19055 PF09375 Imelysin HRD68_19060 PF04261 Dyp-type peroxidase family HRD68_19065 PF03358 NADPH-dependent FMN reductase HRD68_19075 PF01344 Kelch motif HRD68_19080 PF00860 Permease family HRD68_19085 PF01613 Flavin reductase like domain HRD68_19090 PF00881 Nitroreductase family HRD68_19095 PF12697 Alpha/beta hydrolase family HRD68_19100 PF01042 Endoribonuclease L-PSP HRD68_19105 PF00857 Isochorismatase family HRD68_19110 PF00296 Luciferase-like monooxygenase HRD68_19115 PF08362 YcdC-like protein, C-terminal region HRD68_19115 PF00440 Bacterial regulatory proteins, tetR family HRD68_19120 PF00324 Amino acid permease HRD68_19145 PF00128 Alpha amylase, catalytic domain HRD68_19145 PF02806 Alpha amylase, C-terminal all-beta domain HRD68_19155 PF06942 GlpM protein HRD68_19160 PF10769 Protein of unknown function (DUF2594) HRD68_19165 PF00072 Response regulator receiver domain HRD68_19165 PF00196 Bacterial regulatory proteins, luxR family HRD68_19170 PF01541 GIY-YIG catalytic domain HRD68_19170 PF02151 UvrB/uvrC motif HRD68_19170 PF08459 UvrC Helix-hairpin-helix N-terminal HRD68_19175 PF01066 CDP-alcohol phosphatidyltransferase HRD68_19215 PF00717 Peptidase S24-like HRD68_19215 PF01381 Helix-turn-helix HRD68_19235 PF03354 Phage Terminase HRD68_19240 PF05869 DNA N-6-adenine-methyltransferase (Dam) HRD68_19245 PF03374 Phage antirepressor protein KilAC domain HRD68_19245 PF09669 Phage regulatory protein Rha (Phage_pRha) HRD68_19250 PF06147 Protein of unknown function (DUF968) HRD68_19265 PF00182 Chitinase class I HRD68_19295 PF03354 Phage Terminase HRD68_19305 PF04860 Phage portal protein HRD68_19405 PF03212 Pertactin HRD68_19405 PF16168 Adhesin of bacterial autotransporter system, probable stalk HRD68_19405 PF03797 Autotransporter beta-domain HRD68_19405 PF13018 Extended Signal Peptide of Type V secretion system HRD68_19435 PF03606 C4-dicarboxylate anaerobic carrier HRD68_19440 PF01418 Helix-turn-helix domain, rpiR family HRD68_19440 PF01380 SIS domain HRD68_19445 PF10397 Adenylosuccinate lyase C-terminus HRD68_19445 PF00206 Lyase HRD68_19475 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HRD68_19475 PF08447 PAS fold HRD68_19485 PF01053 Cys/Met metabolism PLP-dependent enzyme HRD68_19490 PF05368 NmrA-like family HRD68_19495 PF01638 HxlR-like helix-turn-helix HRD68_19510 PF01232 Mannitol dehydrogenase Rossmann domain HRD68_19510 PF08125 Mannitol dehydrogenase C-terminal domain HRD68_19515 PF08240 Alcohol dehydrogenase GroES-like domain HRD68_19515 PF00107 Zinc-binding dehydrogenase HRD68_19520 PF07729 FCD domain HRD68_19520 PF00392 Bacterial regulatory proteins, gntR family HRD68_19525 PF07690 Major Facilitator Superfamily HRD68_19530 PF00892 EamA-like transporter family HRD68_19535 PF01965 DJ-1/PfpI family HRD68_19535 PF12833 Helix-turn-helix domain HRD68_19545 PF06411 HdeA/HdeB family HRD68_19555 PF00360 Phytochrome region HRD68_19555 PF00990 Diguanylate cyclase, GGDEF domain HRD68_19555 PF01590 GAF domain HRD68_19555 PF00563 EAL domain HRD68_19565 PF00005 ABC transporter HRD68_19565 PF00664 ABC transporter transmembrane region HRD68_19570 PF13520 Amino acid permease HRD68_19580 PF12833 Helix-turn-helix domain HRD68_19585 PF10964 Protein of unknown function (DUF2766) HRD68_19590 PF13996 YobH-like protein HRD68_19595 PF13998 MgrB protein HRD68_19600 PF13974 YebO-like protein HRD68_19615 PF00324 Amino acid permease HRD68_19620 PF07017 Antimicrobial peptide resistance and lipid A acylation protein PagP HRD68_19625 PF10736 Protein of unknown function (DUF2627) HRD68_19630 PF00313 'Cold-shock' DNA-binding domain HRD68_19640 PF03717 Penicillin-binding Protein dimerisation domain HRD68_19640 PF00905 Penicillin binding protein transpeptidase domain HRD68_19655 PF08448 PAS fold HRD68_19655 PF05231 MASE1 HRD68_19655 PF13426 PAS domain HRD68_19655 PF00990 Diguanylate cyclase, GGDEF domain HRD68_19655 PF00563 EAL domain HRD68_19655 PF08447 PAS fold HRD68_19660 PF07715 TonB-dependent Receptor Plug Domain HRD68_19660 PF00593 TonB dependent receptor HRD68_19665 PF02659 Putative manganese efflux pump HRD68_19670 PF06173 Protein of unknown function (DUF986) HRD68_19675 PF03613 PTS system mannose/fructose/sorbose family IID component HRD68_19680 PF03609 PTS system sorbose-specific iic component HRD68_19685 PF03830 PTS system sorbose subfamily IIB component HRD68_19685 PF03610 PTS system fructose IIA component HRD68_19690 PF03741 Integral membrane protein TerC family HRD68_19690 PF03471 Transporter associated domain HRD68_19695 PF02048 Heat-stable enterotoxin ST HRD68_19700 PF03313 Serine dehydratase alpha chain HRD68_19700 PF03315 Serine dehydratase beta chain HRD68_19705 PF00293 NUDIX domain HRD68_19710 PF04715 Anthranilate synthase component I, N terminal region HRD68_19710 PF00425 chorismate binding enzyme HRD68_19715 PF03701 Uncharacterised protein family (UPF0181) HRD68_19720 PF02222 ATP-grasp domain HRD68_19725 PF00271 Helicase conserved C-terminal domain HRD68_19725 PF03880 DbpA RNA binding domain HRD68_19725 PF00270 DEAD/DEAH box helicase HRD68_19730 PF07130 YebG protein HRD68_19740 PF13995 YebF-like protein HRD68_19745 PF00326 Prolyl oligopeptidase family HRD68_19745 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain HRD68_19750 PF00929 Exonuclease HRD68_19760 PF00561 alpha/beta hydrolase fold HRD68_19765 PF06440 DNA polymerase III, theta subunit HRD68_19770 PF00210 Ferritin-like domain HRD68_19775 PF04234 CopC domain HRD68_19780 PF05425 Copper resistance protein D HRD68_19785 PF10709 Protein of unknown function (DUF2511) HRD68_19795 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily HRD68_19805 PF03797 Autotransporter beta-domain HRD68_19820 PF00132 Bacterial transferase hexapeptide (six repeats) HRD68_19835 PF02798 Glutathione S-transferase, N-terminal domain HRD68_19835 PF14834 Glutathione S-transferase, C-terminal domain HRD68_19855 PF07351 Protein of unknown function (DUF1480) HRD68_19860 PF01590 GAF domain HRD68_19860 PF00360 Phytochrome region HRD68_19860 PF00990 Diguanylate cyclase, GGDEF domain HRD68_19860 PF00563 EAL domain HRD68_19895 PF07690 Major Facilitator Superfamily HRD68_19900 PF03466 LysR substrate binding domain HRD68_19900 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HRD68_19905 PF02470 MlaD protein HRD68_19910 PF04403 Paraquat-inducible protein A HRD68_19915 PF13185 GAF domain HRD68_19920 PF04352 ProQ/FINO family HRD68_19920 PF17516 ProQ C-terminal domain HRD68_19925 PF00595 PDZ domain HRD68_19925 PF17804 Tail specific protease N-terminal domain HRD68_19925 PF11818 C-terminal domain of tail specific protease (DUF3340) HRD68_19925 PF03572 Peptidase family S41 HRD68_19930 PF01435 Peptidase family M48 HRD68_19935 PF07690 Major Facilitator Superfamily HRD68_19940 PF14583 Oligogalacturonate lyase HRD68_19945 PF09339 IclR helix-turn-helix domain HRD68_19945 PF01614 Bacterial transcriptional regulator HRD68_19950 PF01510 N-acetylmuramoyl-L-alanine amidase HRD68_19960 PF04307 LexA-binding, inner membrane-associated putative hydrolase HRD68_19965 PF06178 Oligogalacturonate-specific porin protein (KdgM) HRD68_19975 PF03459 TOBE domain HRD68_19975 PF00005 ABC transporter HRD68_19975 PF17912 MalK OB fold domain HRD68_19980 PF00528 Binding-protein-dependent transport system inner membrane component HRD68_19985 PF00528 Binding-protein-dependent transport system inner membrane component HRD68_19990 PF06917 Periplasmic pectate lyase HRD68_20000 PF07883 Cupin domain HRD68_20005 PF13419 Haloacid dehalogenase-like hydrolase HRD68_20010 PF14002 YniB-like protein HRD68_20015 PF03881 Fructosamine kinase HRD68_20020 PF00950 ABC 3 transport family HRD68_20025 PF00950 ABC 3 transport family HRD68_20030 PF00005 ABC transporter HRD68_20035 PF01297 Zinc-uptake complex component A periplasmic HRD68_20040 PF01464 Transglycosylase SLT domain HRD68_20045 PF01914 MarC family integral membrane protein HRD68_20060 PF01261 Xylose isomerase-like TIM barrel HRD68_20065 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family HRD68_20070 PF00370 FGGY family of carbohydrate kinases, N-terminal domain HRD68_20070 PF02782 FGGY family of carbohydrate kinases, C-terminal domain HRD68_20075 PF02615 Malate/L-lactate dehydrogenase HRD68_20090 PF02653 Branched-chain amino acid transport system / permease component HRD68_20095 PF00005 ABC transporter HRD68_20100 PF09339 IclR helix-turn-helix domain HRD68_20100 PF01614 Bacterial transcriptional regulator HRD68_20105 PF04474 Protein of unknown function (DUF554) HRD68_20110 PF13619 KTSC domain HRD68_20115 PF00805 Pentapeptide repeats (8 copies) HRD68_20120 PF02824 TGS domain HRD68_20120 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) HRD68_20120 PF03129 Anticodon binding domain HRD68_20120 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain HRD68_20125 PF05198 Translation initiation factor IF-3, N-terminal domain HRD68_20125 PF00707 Translation initiation factor IF-3, C-terminal domain HRD68_20130 PF01632 Ribosomal protein L35 HRD68_20135 PF00453 Ribosomal protein L20 HRD68_20145 PF01409 tRNA synthetases class II core domain (F) HRD68_20145 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain HRD68_20150 PF03483 B3/4 domain HRD68_20150 PF03484 tRNA synthetase B5 domain HRD68_20150 PF03147 Ferredoxin-fold anticodon binding domain HRD68_20150 PF01588 Putative tRNA binding domain HRD68_20150 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain HRD68_20155 PF00216 Bacterial DNA-binding protein HRD68_20160 PF04293 SpoVR like protein HRD68_20165 PF01266 FAD dependent oxidoreductase HRD68_20170 PF00842 Alanine racemase, C-terminal domain HRD68_20170 PF01168 Alanine racemase, N-terminal domain HRD68_20175 PF00512 His Kinase A (phospho-acceptor) domain HRD68_20175 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HRD68_20175 PF08521 Two-component sensor kinase N-terminal HRD68_20180 PF00486 Transcriptional regulatory protein, C terminal HRD68_20180 PF00072 Response regulator receiver domain HRD68_20185 PF04076 Bacterial OB fold (BOF) protein HRD68_20190 PF07690 Major Facilitator Superfamily HRD68_20195 PF13426 PAS domain HRD68_20195 PF00563 EAL domain HRD68_20195 PF00990 Diguanylate cyclase, GGDEF domain HRD68_20200 PF02678 Pirin HRD68_20200 PF05726 Pirin C-terminal cupin domain HRD68_20205 PF03466 LysR substrate binding domain HRD68_20205 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HRD68_20215 PF04285 Protein of unknown function (DUF444) HRD68_20220 PF08298 PrkA AAA domain HRD68_20220 PF06798 PrkA serine protein kinase C-terminal domain HRD68_20225 PF06629 MltA-interacting protein MipA HRD68_20230 PF01263 Aldose 1-epimerase HRD68_20245 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain HRD68_20245 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain HRD68_20250 PF01641 SelR domain HRD68_20255 PF07023 Protein of unknown function (DUF1315) HRD68_20260 PF00857 Isochorismatase family HRD68_20265 PF17763 Glutaminase/Asparaginase C-terminal domain HRD68_20265 PF00710 Asparaginase, N-terminal HRD68_20270 PF01343 Peptidase family S49 HRD68_20275 PF00881 Nitroreductase family HRD68_20280 PF02769 AIR synthase related protein, C-terminal domain HRD68_20280 PF00586 AIR synthase related protein, N-terminal domain HRD68_20285 PF01131 DNA topoisomerase HRD68_20285 PF01751 Toprim domain HRD68_20290 PF07383 Protein of unknown function (DUF1496) HRD68_20295 PF00293 NUDIX domain HRD68_20300 PF03372 Endonuclease/Exonuclease/phosphatase family HRD68_20305 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HRD68_20305 PF03466 LysR substrate binding domain HRD68_20325 PF00551 Formyl transferase HRD68_20325 PF01842 ACT domain HRD68_20330 PF02810 SEC-C motif HRD68_20340 PF01734 Patatin-like phospholipase HRD68_20345 PF00072 Response regulator receiver domain HRD68_20350 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain HRD68_20350 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain HRD68_20350 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain HRD68_20355 PF00816 H-NS histone family HRD68_20360 PF00265 Thymidine kinase HRD68_20365 PF00171 Aldehyde dehydrogenase family HRD68_20365 PF00465 Iron-containing alcohol dehydrogenase HRD68_20370 PF01914 MarC family integral membrane protein HRD68_20375 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle HRD68_20380 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle HRD68_20385 PF00528 Binding-protein-dependent transport system inner membrane component HRD68_20390 PF00528 Binding-protein-dependent transport system inner membrane component HRD68_20390 PF12911 N-terminal TM domain of oligopeptide transport permease C HRD68_20395 PF08352 Oligopeptide/dipeptide transporter, C-terminal region HRD68_20395 PF00005 ABC transporter HRD68_20400 PF00005 ABC transporter HRD68_20400 PF08352 Oligopeptide/dipeptide transporter, C-terminal region HRD68_20405 PF04269 Protein of unknown function, DUF440 HRD68_20410 PF13091 PLD-like domain HRD68_20410 PF13396 Phospholipase_D-nuclease N-terminal HRD68_20420 PF00563 EAL domain HRD68_20430 PF03795 YCII-related domain HRD68_20435 PF03544 Gram-negative bacterial TonB protein C-terminal HRD68_20440 PF03061 Thioesterase superfamily HRD68_20445 PF04279 Intracellular septation protein A HRD68_20460 PF03922 OmpW family HRD68_20470 PF00290 Tryptophan synthase alpha chain HRD68_20475 PF00291 Pyridoxal-phosphate dependent enzyme HRD68_20480 PF00218 Indole-3-glycerol phosphate synthase HRD68_20480 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase HRD68_20485 PF00591 Glycosyl transferase family, a/b domain HRD68_20485 PF02885 Glycosyl transferase family, helical bundle domain HRD68_20490 PF00117 Glutamine amidotransferase class-I HRD68_20495 PF04715 Anthranilate synthase component I, N terminal region HRD68_20495 PF00425 chorismate binding enzyme HRD68_20505 PF02811 PHP domain HRD68_20510 PF01300 Telomere recombination HRD68_20515 PF03797 Autotransporter beta-domain HRD68_20520 PF00196 Bacterial regulatory proteins, luxR family HRD68_20520 PF00072 Response regulator receiver domain HRD68_20530 PF01479 S4 domain HRD68_20530 PF00849 RNA pseudouridylate synthase HRD68_20535 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP HRD68_20540 PF00106 short chain dehydrogenase HRD68_20545 PF01343 Peptidase family S49 HRD68_20545 PF08496 Peptidase family S49 N-terminal HRD68_20550 PF10692 Protein of unknown function (DUF2498) HRD68_20555 PF01396 Topoisomerase DNA binding C4 zinc finger HRD68_20555 PF01751 Toprim domain HRD68_20555 PF08272 Topoisomerase I zinc-ribbon-like HRD68_20555 PF01131 DNA topoisomerase HRD68_20560 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HRD68_20560 PF03466 LysR substrate binding domain HRD68_20570 PF00694 Aconitase C-terminal domain HRD68_20570 PF00330 Aconitase family (aconitate hydratase) HRD68_20575 PF00925 GTP cyclohydrolase II HRD68_20580 PF01569 PAP2 superfamily HRD68_20585 PF06305 Lipopolysaccharide assembly protein A domain HRD68_20590 PF18073 Rubredoxin metal binding domain HRD68_20600 PF07338 Protein of unknown function (DUF1471) HRD68_20605 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family HRD68_20610 PF01253 Translation initiation factor SUI1 HRD68_20615 PF05433 Glycine zipper 2TM domain HRD68_20620 PF00596 Class II Aldolase and Adducin N-terminal domain HRD68_20630 PF00455 DeoR C terminal sensor domain HRD68_20630 PF08220 DeoR-like helix-turn-helix domain HRD68_20635 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HRD68_20635 PF03466 LysR substrate binding domain HRD68_20645 PF00923 Transaldolase/Fructose-6-phosphate aldolase HRD68_20650 PF04328 Selenoprotein, putative HRD68_20655 PF02554 Carbon starvation protein CstA HRD68_20655 PF13722 5TM C-terminal transporter carbon starvation CstA HRD68_20660 PF08206 Ribonuclease B OB domain HRD68_20660 PF00773 RNB domain HRD68_20660 PF00575 S1 RNA binding domain HRD68_20665 PF00384 Molybdopterin oxidoreductase HRD68_20670 PF10576 Iron-sulfur binding domain of endonuclease III HRD68_20670 PF00730 HhH-GPD superfamily base excision DNA repair protein HRD68_20670 PF00633 Helix-hairpin-helix motif HRD68_20675 PF02508 Rnf-Nqr subunit, membrane protein HRD68_20680 PF04205 FMN-binding domain HRD68_20685 PF03116 NQR2, RnfD, RnfE family HRD68_20690 PF06445 GyrI-like small molecule binding domain HRD68_20690 PF12833 Helix-turn-helix domain HRD68_20695 PF13237 4Fe-4S dicluster domain HRD68_20695 PF10531 SLBB domain HRD68_20695 PF13375 RnfC Barrel sandwich hybrid domain HRD68_20695 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit HRD68_20700 PF04060 Putative Fe-S cluster HRD68_20705 PF02508 Rnf-Nqr subunit, membrane protein HRD68_20710 PF10754 Protein of unknown function (DUF2569) HRD68_20715 PF01268 Formate--tetrahydrofolate ligase HRD68_20720 PF00664 ABC transporter transmembrane region HRD68_20720 PF03412 Peptidase C39 family HRD68_20720 PF00005 ABC transporter HRD68_20725 PF13533 Biotin-lipoyl like HRD68_20730 PF00664 ABC transporter transmembrane region HRD68_20730 PF03412 Peptidase C39 family HRD68_20730 PF00005 ABC transporter HRD68_20735 PF02463 RecF/RecN/SMC N terminal domain HRD68_20740 PF02610 L-arabinose isomerase HRD68_20740 PF11762 L-arabinose isomerase C-terminal domain HRD68_20745 PF02782 FGGY family of carbohydrate kinases, C-terminal domain HRD68_20750 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family HRD68_20755 PF00005 ABC transporter HRD68_20760 PF02653 Branched-chain amino acid transport system / permease component HRD68_20765 PF12833 Helix-turn-helix domain HRD68_20765 PF02311 AraC-like ligand binding domain HRD68_20770 PF02894 Oxidoreductase family, C-terminal alpha/beta domain HRD68_20770 PF01408 Oxidoreductase family, NAD-binding Rossmann fold HRD68_20775 PF13593 SBF-like CPA transporter family (DUF4137) HRD68_20780 PF00962 Adenosine/AMP deaminase HRD68_20785 PF00155 Aminotransferase class I and II HRD68_20790 PF02378 Phosphotransferase system, EIIC HRD68_20790 PF00367 phosphotransferase system, EIIB HRD68_20795 PF00356 Bacterial regulatory proteins, lacI family HRD68_20795 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family HRD68_20815 PF06097 Bacterial protein of unknown function (DUF945) HRD68_20820 PF01238 Phosphomannose isomerase type I HRD68_20825 PF10415 Fumarase C C-terminus HRD68_20825 PF00206 Lyase HRD68_20830 PF05472 DNA replication terminus site-binding protein (Ter protein) HRD68_20840 PF07690 Major Facilitator Superfamily HRD68_20845 PF03466 LysR substrate binding domain HRD68_20845 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HRD68_20850 PF00480 ROK family HRD68_20860 PF00654 Voltage gated chloride channel HRD68_20865 PF06649 Protein of unknown function (DUF1161) HRD68_20870 PF06932 Protein of unknown function (DUF1283) HRD68_20875 PF02694 Uncharacterised BCR, YnfA/UPF0060 family HRD68_20880 PF00106 short chain dehydrogenase HRD68_20885 PF07690 Major Facilitator Superfamily HRD68_20890 PF07338 Protein of unknown function (DUF1471) HRD68_20895 PF00194 Eukaryotic-type carbonic anhydrase HRD68_20925 PF02798 Glutathione S-transferase, N-terminal domain HRD68_20935 PF01037 Lrp/AsnC ligand binding domain HRD68_20940 PF00528 Binding-protein-dependent transport system inner membrane component HRD68_20945 PF00528 Binding-protein-dependent transport system inner membrane component HRD68_20950 PF00497 Bacterial extracellular solute-binding proteins, family 3 HRD68_20960 PF01048 Phosphorylase superfamily HRD68_20960 PF10423 Bacterial AMP nucleoside phosphorylase N-terminus HRD68_20985 PF00282 Pyridoxal-dependent decarboxylase conserved domain HRD68_20990 PF13520 Amino acid permease HRD68_20995 PF04960 Glutaminase HRD68_21000 PF13419 Haloacid dehalogenase-like hydrolase HRD68_21020 PF00245 Alkaline phosphatase HRD68_21030 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HRD68_21030 PF03466 LysR substrate binding domain HRD68_21035 PF06445 GyrI-like small molecule binding domain HRD68_21050 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain HRD68_21050 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain HRD68_21055 PF00027 Cyclic nucleotide-binding domain HRD68_21055 PF13545 Crp-like helix-turn-helix domain HRD68_21060 PF00582 Universal stress protein family HRD68_21065 PF02233 NAD(P) transhydrogenase beta subunit HRD68_21070 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch HRD68_21070 PF05222 Alanine dehydrogenase/PNT, N-terminal domain HRD68_21070 PF01262 Alanine dehydrogenase/PNT, C-terminal domain HRD68_21075 PF07338 Protein of unknown function (DUF1471) HRD68_21080 PF13520 Amino acid permease HRD68_21090 PF00072 Response regulator receiver domain HRD68_21090 PF00486 Transcriptional regulatory protein, C terminal HRD68_21095 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HRD68_21095 PF00672 HAMP domain HRD68_21095 PF00512 His Kinase A (phospho-acceptor) domain HRD68_21100 PF02074 Carboxypeptidase Taq (M32) metallopeptidase HRD68_21110 PF00089 Trypsin HRD68_21120 PF05973 Phage derived protein Gp49-like (DUF891) HRD68_21125 PF04408 Helicase associated domain (HA2) HRD68_21125 PF11898 Domain of unknown function (DUF3418) HRD68_21125 PF00270 DEAD/DEAH box helicase HRD68_21125 PF00271 Helicase conserved C-terminal domain HRD68_21125 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold HRD68_21130 PF02525 Flavodoxin-like fold HRD68_21135 PF00083 Sugar (and other) transporter HRD68_21145 PF13693 Winged helix-turn-helix DNA-binding HRD68_21150 PF04198 Putative sugar-binding domain HRD68_21155 PF08125 Mannitol dehydrogenase C-terminal domain HRD68_21155 PF01232 Mannitol dehydrogenase Rossmann domain HRD68_21160 PF02782 FGGY family of carbohydrate kinases, C-terminal domain HRD68_21160 PF00370 FGGY family of carbohydrate kinases, N-terminal domain HRD68_21165 PF07690 Major Facilitator Superfamily HRD68_21170 PF07027 Protein of unknown function (DUF1318) HRD68_21175 PF13617 YnbE-like lipoprotein HRD68_21180 PF11739 Dicarboxylate transport HRD68_21185 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain HRD68_21185 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain HRD68_21190 PF03891 Domain of unknown function (DUF333) HRD68_21195 PF00893 Small Multidrug Resistance protein HRD68_21200 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg HRD68_21200 PF10371 Domain of unknown function HRD68_21200 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II HRD68_21200 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase HRD68_21200 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain HRD68_21205 PF00232 Glycosyl hydrolase family 1 HRD68_21210 PF00367 phosphotransferase system, EIIB HRD68_21210 PF02378 Phosphotransferase system, EIIC HRD68_21210 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 HRD68_21215 PF00874 PRD domain HRD68_21215 PF03123 CAT RNA binding domain HRD68_21220 PF01171 PP-loop family HRD68_21225 PF01544 CorA-like Mg2+ transporter protein HRD68_21230 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle HRD68_21235 PF00246 Zinc carboxypeptidase HRD68_21240 PF13378 Enolase C-terminal domain-like HRD68_21240 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain HRD68_21245 PF08534 Redoxin HRD68_21250 PF00158 Sigma-54 interaction domain HRD68_21250 PF18024 Helix-turn-helix domain HRD68_21255 PF09722 Protein of unknown function (DUF2384) HRD68_21260 PF08808 RES domain HRD68_21265 PF05128 Domain of unknown function (DUF697) HRD68_21270 PF04317 YcjX-like family, DUF463 HRD68_21280 PF04024 PspC domain HRD68_21285 PF06667 Phage shock protein B HRD68_21290 PF04012 PspA/IM30 family HRD68_21295 PF02954 Bacterial regulatory protein, Fis family HRD68_21295 PF00158 Sigma-54 interaction domain HRD68_21300 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle HRD68_21305 PF00528 Binding-protein-dependent transport system inner membrane component HRD68_21310 PF00528 Binding-protein-dependent transport system inner membrane component HRD68_21310 PF12911 N-terminal TM domain of oligopeptide transport permease C HRD68_21315 PF00005 ABC transporter HRD68_21315 PF08352 Oligopeptide/dipeptide transporter, C-terminal region HRD68_21320 PF00005 ABC transporter HRD68_21330 PF00854 POT family HRD68_21335 PF00753 Metallo-beta-lactamase superfamily HRD68_21345 PF04893 Yip1 domain HRD68_21350 PF11656 YjbD family (DUF3811) HRD68_21355 PF00043 Glutathione S-transferase, C-terminal domain HRD68_21355 PF02798 Glutathione S-transferase, N-terminal domain HRD68_21360 PF08543 Phosphomethylpyrimidine kinase HRD68_21365 PF00579 tRNA synthetases class I (W and Y) HRD68_21365 PF01479 S4 domain HRD68_21370 PF01243 Pyridoxamine 5'-phosphate oxidase HRD68_21370 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region HRD68_21375 PF09864 Membrane-bound lysozyme-inhibitor of c-type lysozyme HRD68_21380 PF03702 Anhydro-N-acetylmuramic acid kinase HRD68_21385 PF05433 Glycine zipper 2TM domain HRD68_21390 PF01047 MarR family HRD68_21395 PF07869 Protein of unknown function (DUF1656) HRD68_21400 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion HRD68_21400 PF00529 HlyD membrane-fusion protein of T1SS HRD68_21405 PF04632 Fusaric acid resistance protein family HRD68_21410 PF00248 Aldo/keto reductase family HRD68_21415 PF06945 Protein of unknown function (DUF1289) HRD68_21420 PF00884 Sulfatase HRD68_21420 PF08019 Phosphoethanolamine transferase EptA/EptB HRD68_21425 PF00440 Bacterial regulatory proteins, tetR family HRD68_21425 PF16925 Tetracyclin repressor-like, C-terminal domain HRD68_21430 PF00724 NADH:flavin oxidoreductase / NADH oxidase family HRD68_21435 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily HRD68_21440 PF00929 Exonuclease HRD68_21445 PF00462 Glutaredoxin HRD68_21450 PF00877 NlpC/P60 family HRD68_21455 PF02777 Iron/manganese superoxide dismutases, C-terminal domain HRD68_21455 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain HRD68_21465 PF00356 Bacterial regulatory proteins, lacI family HRD68_21470 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HRD68_21470 PF03466 LysR substrate binding domain HRD68_21475 PF07690 Major Facilitator Superfamily HRD68_21485 PF00677 Lumazine binding domain HRD68_21490 PF01554 MatE HRD68_21505 PF00224 Pyruvate kinase, barrel domain HRD68_21505 PF02887 Pyruvate kinase, alpha/beta domain HRD68_21510 PF04728 Lipoprotein leucine-zipper HRD68_21515 PF03734 L,D-transpeptidase catalytic domain HRD68_21515 PF01476 LysM domain HRD68_21515 PF17969 L,D-transpeptidase C-terminal domain HRD68_21520 PF02657 Fe-S metabolism associated domain HRD68_21525 PF00266 Aminotransferase class-V HRD68_21530 PF01458 Uncharacterized protein family (UPF0051) HRD68_21535 PF00005 ABC transporter HRD68_21540 PF01458 Uncharacterized protein family (UPF0051) HRD68_21545 PF01521 Iron-sulphur cluster biosynthesis HRD68_21550 PF03061 Thioesterase superfamily HRD68_21555 PF02913 FAD linked oxidases, C-terminal domain HRD68_21555 PF01565 FAD binding domain HRD68_21555 PF13183 4Fe-4S dicluster domain HRD68_21560 PF01594 AI-2E family transporter HRD68_21570 PF02896 PEP-utilising enzyme, TIM barrel domain HRD68_21570 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain HRD68_21570 PF00391 PEP-utilising enzyme, mobile domain HRD68_21575 PF03618 Kinase/pyrophosphorylase HRD68_21580 PF00793 DAHP synthetase I family HRD68_21585 PF02696 Uncharacterized ACR, YdiU/UPF0061 family HRD68_21590 PF03099 Biotin/lipoate A/B protein ligase family HRD68_21590 PF10437 Bacterial lipoate protein ligase C-terminus HRD68_21595 PF00877 NlpC/P60 family HRD68_21605 PF00892 EamA-like transporter family HRD68_21610 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase HRD68_21615 PF01522 Polysaccharide deacetylase HRD68_21620 PF01370 NAD dependent epimerase/dehydratase family HRD68_21620 PF02911 Formyl transferase, C-terminal domain HRD68_21620 PF00551 Formyl transferase HRD68_21625 PF00535 Glycosyl transferase family 2 HRD68_21630 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family HRD68_21635 PF00005 ABC transporter HRD68_21640 PF00255 Glutathione peroxidase HRD68_21645 PF01032 FecCD transport family HRD68_21655 PF00877 NlpC/P60 family HRD68_21660 PF07840 FadR C-terminal domain HRD68_21660 PF00392 Bacterial regulatory proteins, gntR family HRD68_21665 PF06450 Bacterial Na+/H+ antiporter B (NhaB) HRD68_21670 PF02600 Disulfide bond formation protein DsbB HRD68_21680 PF03692 Putative zinc- or iron-chelating domain HRD68_21685 PF01557 Fumarylacetoacetate (FAA) hydrolase family HRD68_21690 PF05166 YcgL domain HRD68_21695 PF05209 Septum formation inhibitor MinC, N-terminal domain HRD68_21695 PF03775 Septum formation inhibitor MinC, C-terminal domain HRD68_21700 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain HRD68_21705 PF03776 Septum formation topological specificity factor MinE HRD68_21710 PF01612 3'-5' exonuclease HRD68_21710 PF00570 HRDC domain HRD68_21715 PF13193 AMP-binding enzyme C-terminal domain HRD68_21715 PF00501 AMP-binding enzyme HRD68_21720 PF03843 Outer membrane lipoprotein Slp family HRD68_21725 PF00814 Glycoprotease family HRD68_21730 PF04851 Type III restriction enzyme, res subunit HRD68_21730 PF13307 Helicase C-terminal domain HRD68_21735 PF01042 Endoribonuclease L-PSP HRD68_21740 PF00893 Small Multidrug Resistance protein HRD68_21745 PF00893 Small Multidrug Resistance protein HRD68_21750 PF18416 N-acetylglucosamine binding protein domain 2 HRD68_21750 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading HRD68_21755 PF01081 KDPG and KHG aldolase HRD68_21760 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain HRD68_21760 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain HRD68_21765 PF01380 SIS domain HRD68_21765 PF01418 Helix-turn-helix domain, rpiR family HRD68_21770 PF02887 Pyruvate kinase, alpha/beta domain HRD68_21770 PF00224 Pyruvate kinase, barrel domain HRD68_21775 PF03279 Bacterial lipid A biosynthesis acyltransferase HRD68_21780 PF01551 Peptidase family M23 HRD68_21780 PF08525 Opacity-associated protein A N-terminal motif HRD68_21780 PF01476 LysM domain HRD68_21785 PF01297 Zinc-uptake complex component A periplasmic HRD68_21790 PF00005 ABC transporter HRD68_21795 PF00950 ABC 3 transport family HRD68_21800 PF05496 Holliday junction DNA helicase RuvB P-loop domain HRD68_21800 PF17864 RuvB AAA lid domain HRD68_21800 PF05491 RuvB C-terminal winged helix domain HRD68_21805 PF07499 RuvA, C-terminal domain HRD68_21805 PF01330 RuvA N terminal domain HRD68_21810 PF02075 Crossover junction endodeoxyribonuclease RuvC HRD68_21815 PF01709 Transcriptional regulator HRD68_21820 PF00293 NUDIX domain HRD68_21825 PF00152 tRNA synthetases class II (D, K and N) HRD68_21825 PF01336 OB-fold nucleic acid binding domain HRD68_21825 PF02938 GAD domain HRD68_21830 PF00857 Isochorismatase family HRD68_21835 PF01904 Protein of unknown function DUF72 HRD68_21840 PF01124 MAPEG family HRD68_21845 PF13649 Methyltransferase domain HRD68_21850 PF08003 Protein of unknown function (DUF1698) HRD68_21855 PF03932 CutC family HRD68_21860 PF06185 YecM protein HRD68_21865 PF05746 DALR anticodon binding domain HRD68_21865 PF00750 tRNA synthetases class I (R) HRD68_21865 PF03485 Arginyl tRNA synthetase N terminal domain HRD68_21870 PF03023 Lipid II flippase MurJ HRD68_21875 PF01408 Oxidoreductase family, NAD-binding Rossmann fold HRD68_21880 PF04337 Protein of unknown function, DUF480 HRD68_21885 PF13302 Acetyltransferase (GNAT) domain HRD68_21890 PF07690 Major Facilitator Superfamily HRD68_21895 PF07273 Protein of unknown function (DUF1439) HRD68_21900 PF02613 Nitrate reductase delta subunit HRD68_21905 PF02811 PHP domain HRD68_21910 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain HRD68_21925 PF00990 Diguanylate cyclase, GGDEF domain HRD68_21930 PF00916 Sulfate permease family HRD68_21930 PF01740 STAS domain HRD68_21935 PF00793 DAHP synthetase I family HRD68_21940 PF13369 Transglutaminase-like superfamily HRD68_21945 PF04247 Invasion gene expression up-regulator, SirB HRD68_21950 PF13847 Methyltransferase domain HRD68_21950 PF17827 PrmC N-terminal domain HRD68_21955 PF00472 RF-1 domain HRD68_21955 PF03462 PCRF domain HRD68_21960 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain HRD68_21960 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain HRD68_21960 PF01488 Shikimate / quinate 5-dehydrogenase HRD68_21965 PF03550 Outer membrane lipoprotein LolB HRD68_21975 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase HRD68_21975 PF14572 Phosphoribosyl synthetase-associated domain HRD68_21980 PF10762 Protein of unknown function (DUF2583) HRD68_21985 PF01195 Peptidyl-tRNA hydrolase HRD68_21995 PF06071 Protein of unknown function (DUF933) HRD68_21995 PF01926 50S ribosome-binding GTPase HRD68_22000 PF13356 Arm DNA-binding domain HRD68_22000 PF00589 Phage integrase family HRD68_22045 PF02899 Phage integrase, N-terminal SAM-like domain HRD68_22045 PF00589 Phage integrase family HRD68_22050 PF04002 RadC-like JAB domain HRD68_22070 PF13693 Winged helix-turn-helix DNA-binding HRD68_22110 PF00145 C-5 cytosine-specific DNA methylase HRD68_22125 PF09857 Putative toxin of bacterial toxin-antitoxin pair HRD68_22130 PF13847 Methyltransferase domain HRD68_22135 PF17287 POTRA domain HRD68_22135 PF08479 POTRA domain, ShlB-type HRD68_22135 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB HRD68_22140 PF05860 haemagglutination activity domain HRD68_22140 PF04829 Pre-toxin domain with VENN motif HRD68_22140 PF13018 Extended Signal Peptide of Type V secretion system HRD68_22140 PF13332 Hemagglutinin repeat HRD68_22175 PF01212 Beta-eliminating lyase HRD68_22185 PF03616 Sodium/glutamate symporter HRD68_22190 PF00484 Carbonic anhydrase HRD68_22200 PF00072 Response regulator receiver domain HRD68_22200 PF00486 Transcriptional regulatory protein, C terminal HRD68_22205 PF00512 His Kinase A (phospho-acceptor) domain HRD68_22205 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HRD68_22205 PF00672 HAMP domain HRD68_22220 PF00248 Aldo/keto reductase family HRD68_22225 PF00501 AMP-binding enzyme HRD68_22225 PF13193 AMP-binding enzyme C-terminal domain HRD68_22235 PF01494 FAD binding domain HRD68_22240 PF01012 Electron transfer flavoprotein domain HRD68_22240 PF00766 Electron transfer flavoprotein FAD-binding domain HRD68_22245 PF01012 Electron transfer flavoprotein domain HRD68_22250 PF02311 AraC-like ligand binding domain HRD68_22250 PF12833 Helix-turn-helix domain HRD68_22255 PF00441 Acyl-CoA dehydrogenase, C-terminal domain HRD68_22255 PF02770 Acyl-CoA dehydrogenase, middle domain HRD68_22255 PF02771 Acyl-CoA dehydrogenase, N-terminal domain HRD68_22260 PF01144 Coenzyme A transferase HRD68_22265 PF01487 Type I 3-dehydroquinase HRD68_22270 PF08501 Shikimate dehydrogenase substrate binding domain HRD68_22270 PF18317 Shikimate 5'-dehydrogenase C-terminal domain HRD68_22275 PF07690 Major Facilitator Superfamily HRD68_22280 PF03466 LysR substrate binding domain HRD68_22280 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HRD68_22285 PF07690 Major Facilitator Superfamily HRD68_22290 PF08965 Domain of unknown function (DUF1870) HRD68_22295 PF01476 LysM domain HRD68_22295 PF01551 Peptidase family M23 HRD68_22305 PF09223 ZinT (YodA) periplasmic lipocalin-like zinc-recruitment HRD68_22310 PF02653 Branched-chain amino acid transport system / permease component HRD68_22315 PF00005 ABC transporter HRD68_22320 PF13407 Periplasmic binding protein domain HRD68_22330 PF01979 Amidohydrolase family HRD68_22335 PF07702 UTRA domain HRD68_22335 PF00392 Bacterial regulatory proteins, gntR family HRD68_22340 PF01979 Amidohydrolase family HRD68_22350 PF00267 Gram-negative porin HRD68_22355 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family HRD68_22360 PF04996 Succinylarginine dihydrolase HRD68_22365 PF00171 Aldehyde dehydrogenase family HRD68_22370 PF04958 Arginine N-succinyltransferase beta subunit HRD68_22375 PF00202 Aminotransferase class-III HRD68_22380 PF00544 Pectate lyase HRD68_22385 PF00155 Aminotransferase class I and II HRD68_22385 PF00392 Bacterial regulatory proteins, gntR family HRD68_22390 PF01654 Cytochrome bd terminal oxidase subunit I HRD68_22395 PF02322 Cytochrome bd terminal oxidase subunit II HRD68_22405 PF07730 Histidine kinase HRD68_22405 PF00672 HAMP domain HRD68_22405 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HRD68_22405 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term HRD68_22410 PF03466 LysR substrate binding domain HRD68_22410 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HRD68_22420 PF01699 Sodium/calcium exchanger protein HRD68_22425 PF02562 PhoH-like protein HRD68_22435 PF13994 PgaD-like protein HRD68_22440 PF00535 Glycosyl transferase family 2 HRD68_22445 PF01522 Polysaccharide deacetylase HRD68_22445 PF14883 Hypothetical glycosyl hydrolase family 13 HRD68_22455 PF00557 Metallopeptidase family M24 HRD68_22465 PF03466 LysR substrate binding domain HRD68_22465 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HRD68_22470 PF03848 Tellurite resistance protein TehB HRD68_22470 PF09313 Domain of unknown function (DUF1971) HRD68_22480 PF00578 AhpC/TSA family HRD68_22485 PF00005 ABC transporter HRD68_22485 PF02687 FtsX-like permease family HRD68_22485 PF12704 MacB-like periplasmic core domain HRD68_22495 PF02687 FtsX-like permease family HRD68_22495 PF12704 MacB-like periplasmic core domain HRD68_22495 PF00005 ABC transporter HRD68_22505 PF10634 Fe2+ transport protein HRD68_22510 PF03239 Iron permease FTR1 family HRD68_22520 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit HRD68_22525 PF00232 Glycosyl hydrolase family 1 HRD68_22530 PF02378 Phosphotransferase system, EIIC HRD68_22530 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit HRD68_22535 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit HRD68_22540 PF00356 Bacterial regulatory proteins, lacI family HRD68_22555 PF04960 Glutaminase HRD68_22560 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HRD68_22560 PF00989 PAS fold HRD68_22560 PF17203 Single cache domain 3 HRD68_22560 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain HRD68_22565 PF00072 Response regulator receiver domain HRD68_22570 PF03390 2-hydroxycarboxylate transporter family HRD68_22575 PF00324 Amino acid permease HRD68_22580 PF04343 Protein of unknown function, DUF488 HRD68_22590 PF07690 Major Facilitator Superfamily HRD68_22615 PF00180 Isocitrate/isopropylmalate dehydrogenase HRD68_22620 PF00849 RNA pseudouridylate synthase HRD68_22625 PF00293 NUDIX domain HRD68_22635 PF04356 Protein of unknown function (DUF489) HRD68_22640 PF08328 Adenylosuccinate lyase C-terminal HRD68_22640 PF00206 Lyase HRD68_22650 PF00072 Response regulator receiver domain HRD68_22650 PF00486 Transcriptional regulatory protein, C terminal HRD68_22655 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HRD68_22655 PF08918 PhoQ Sensor HRD68_22660 PF08007 Cupin superfamily protein HRD68_22665 PF01546 Peptidase family M20/M25/M40 HRD68_22665 PF07687 Peptidase dimerisation domain HRD68_22670 PF02146 Sir2 family HRD68_22675 PF00480 ROK family HRD68_22680 PF02687 FtsX-like permease family HRD68_22680 PF12704 MacB-like periplasmic core domain HRD68_22685 PF00005 ABC transporter HRD68_22690 PF02687 FtsX-like permease family HRD68_22690 PF12704 MacB-like periplasmic core domain HRD68_22695 PF00270 DEAD/DEAH box helicase HRD68_22695 PF00271 Helicase conserved C-terminal domain HRD68_22695 PF03461 TRCF domain HRD68_22695 PF17757 UvrB interaction domain HRD68_22695 PF02559 CarD-like/TRCF domain HRD68_22700 PF05433 Glycine zipper 2TM domain HRD68_22705 PF07992 Pyridine nucleotide-disulphide oxidoreductase HRD68_22710 PF05728 Uncharacterised protein family (UPF0227) HRD68_22715 PF00933 Glycosyl hydrolase family 3 N terminal domain HRD68_22720 PF01636 Phosphotransferase enzyme family HRD68_22725 PF08139 Prokaryotic membrane lipoprotein lipid attachment site HRD68_22725 PF13036 Peptidoglycan-synthase activator LpoB HRD68_22730 PF07233 Protein of unknown function (DUF1425) HRD68_22735 PF01230 HIT domain HRD68_22740 PF08501 Shikimate dehydrogenase substrate binding domain HRD68_22745 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle HRD68_22745 PF12793 Sugar transport-related sRNA regulator N-term HRD68_22750 PF00367 phosphotransferase system, EIIB HRD68_22750 PF02378 Phosphotransferase system, EIIC HRD68_22755 PF01026 TatD related DNase HRD68_22760 PF09115 DNA polymerase III, delta subunit, C terminal HRD68_22765 PF02223 Thymidylate kinase HRD68_22770 PF02618 YceG-like family HRD68_22775 PF01063 Amino-transferase class IV HRD68_22780 PF02801 Beta-ketoacyl synthase, C-terminal domain HRD68_22780 PF00109 Beta-ketoacyl synthase, N-terminal domain HRD68_22785 PF00550 Phosphopantetheine attachment site HRD68_22795 PF00698 Acyl transferase domain HRD68_22800 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal HRD68_22800 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III HRD68_22805 PF02504 Fatty acid synthesis protein HRD68_22810 PF01783 Ribosomal L32p protein family HRD68_22815 PF02620 Large ribosomal RNA subunit accumulation protein YceD HRD68_22820 PF02545 Maf-like protein HRD68_22825 PF01479 S4 domain HRD68_22825 PF00849 RNA pseudouridylate synthase HRD68_22830 PF12111 Polyribonucleotide phosphorylase C terminal HRD68_22830 PF10150 Ribonuclease E/G family HRD68_22830 PF00575 S1 RNA binding domain HRD68_22835 PF03992 Antibiotic biosynthesis monooxygenase HRD68_22840 PF01979 Amidohydrolase family HRD68_22845 PF06183 DinI-like family HRD68_22850 PF13991 BssS protein family HRD68_22855 PF01266 FAD dependent oxidoreductase HRD68_22860 PF00196 Bacterial regulatory proteins, luxR family HRD68_22860 PF00072 Response regulator receiver domain HRD68_22870 PF01594 AI-2E family transporter HRD68_22880 PF13536 Putative multidrug resistance efflux transporter HRD68_22890 PF00384 Molybdopterin oxidoreductase HRD68_22890 PF04879 Molybdopterin oxidoreductase Fe4S4 domain HRD68_22890 PF01568 Molydopterin dinucleotide binding domain HRD68_22895 PF03916 Polysulphide reductase, NrfD HRD68_22900 PF13247 4Fe-4S dicluster domain HRD68_22905 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HRD68_22905 PF00512 His Kinase A (phospho-acceptor) domain HRD68_22910 PF00196 Bacterial regulatory proteins, luxR family HRD68_22910 PF00072 Response regulator receiver domain HRD68_22915 PF03279 Bacterial lipid A biosynthesis acyltransferase HRD68_22920 PF07681 DoxX HRD68_22925 PF07690 Major Facilitator Superfamily HRD68_22930 PF00854 POT family HRD68_22940 PF07119 Protein of unknown function (DUF1375) HRD68_22945 PF00535 Glycosyl transferase family 2 HRD68_22950 PF04349 Periplasmic glucan biosynthesis protein, MdoG HRD68_22955 PF01757 Acyltransferase family HRD68_22965 PF00999 Sodium/hydrogen exchanger family HRD68_22965 PF02080 TrkA-C domain HRD68_22965 PF03471 Transporter associated domain HRD68_22975 PF00765 Autoinducer synthase HRD68_22980 PF00196 Bacterial regulatory proteins, luxR family HRD68_22980 PF03472 Autoinducer binding domain HRD68_22985 PF03918 Cytochrome C biogenesis protein HRD68_22990 PF03918 Cytochrome C biogenesis protein HRD68_22995 PF08534 Redoxin HRD68_23000 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal HRD68_23000 PF01578 Cytochrome C assembly protein HRD68_23005 PF03916 Polysulphide reductase, NrfD HRD68_23010 PF00037 4Fe-4S binding domain HRD68_23010 PF13247 4Fe-4S dicluster domain HRD68_23015 PF09699 Doubled CXXCH motif (Paired_CXXCH_1) HRD68_23015 PF13435 Cytochrome c554 and c-prime HRD68_23020 PF02335 Cytochrome c552 HRD68_23025 PF03472 Autoinducer binding domain HRD68_23025 PF00196 Bacterial regulatory proteins, luxR family HRD68_23030 PF00765 Autoinducer synthase HRD68_23040 PF01979 Amidohydrolase family HRD68_23045 PF10397 Adenylosuccinate lyase C-terminus HRD68_23045 PF00206 Lyase HRD68_23050 PF00367 phosphotransferase system, EIIB HRD68_23050 PF02378 Phosphotransferase system, EIIC HRD68_23060 PF02502 Ribose/Galactose Isomerase HRD68_23065 PF01418 Helix-turn-helix domain, rpiR family HRD68_23065 PF01380 SIS domain HRD68_23070 PF13407 Periplasmic binding protein domain HRD68_23075 PF00005 ABC transporter HRD68_23080 PF02653 Branched-chain amino acid transport system / permease component HRD68_23085 PF00834 Ribulose-phosphate 3 epimerase family HRD68_23090 PF00480 ROK family HRD68_23095 PF08220 DeoR-like helix-turn-helix domain HRD68_23095 PF00455 DeoR C terminal sensor domain HRD68_23105 PF07690 Major Facilitator Superfamily HRD68_23110 PF00370 FGGY family of carbohydrate kinases, N-terminal domain HRD68_23110 PF02782 FGGY family of carbohydrate kinases, C-terminal domain HRD68_23115 PF01791 DeoC/LacD family aldolase HRD68_23125 PF06183 DinI-like family HRD68_23130 PF06183 DinI-like family HRD68_23135 PF03797 Autotransporter beta-domain HRD68_23140 PF02413 Caudovirales tail fibre assembly protein, lambda gpK HRD68_23145 PF07484 Phage Tail Collar Domain