locus-tag class description DA391_00005 PF00308 Bacterial dnaA protein DA391_00005 PF08299 Bacterial dnaA protein helix-turn-helix DA391_00005 PF11638 DnaA N-terminal domain DA391_00010 PF00712 DNA polymerase III beta subunit, N-terminal domain DA391_00010 PF02767 DNA polymerase III beta subunit, central domain DA391_00010 PF02768 DNA polymerase III beta subunit, C-terminal domain DA391_00015 PF02463 RecF/RecN/SMC N terminal domain DA391_00020 PF18053 DNA gyrase B subunit insert domain DA391_00020 PF01751 Toprim domain DA391_00020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DA391_00020 PF00986 DNA gyrase B subunit, carboxyl terminus DA391_00020 PF00204 DNA gyrase B DA391_00035 PF02423 Ornithine cyclodeaminase/mu-crystallin family DA391_00040 PF00291 Pyridoxal-phosphate dependent enzyme DA391_00045 PF08348 YheO-like PAS domain DA391_00045 PF13309 HTH domain DA391_00050 PF12566 Protein of unknown function (DUF3748) DA391_00050 PF07676 WD40-like Beta Propeller Repeat DA391_00055 PF07119 Protein of unknown function (DUF1375) DA391_00060 PF00011 Hsp20/alpha crystallin family DA391_00065 PF00011 Hsp20/alpha crystallin family DA391_00070 PF06826 Predicted Permease Membrane Region DA391_00070 PF02080 TrkA-C domain DA391_00075 PF00155 Aminotransferase class I and II DA391_00080 PF00128 Alpha amylase, catalytic domain DA391_00085 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain DA391_00085 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain DA391_00090 PF07690 Major Facilitator Superfamily DA391_00100 PF00691 OmpA family DA391_00100 PF13488 Glycine zipper DA391_00115 PF03352 Methyladenine glycosylase DA391_00125 PF02091 Glycyl-tRNA synthetase alpha subunit DA391_00130 PF02092 Glycyl-tRNA synthetase beta subunit DA391_00130 PF05746 DALR anticodon binding domain DA391_00135 PF11254 Protein of unknown function (DUF3053) DA391_00150 PF09106 Elongation factor SelB, winged helix DA391_00150 PF00009 Elongation factor Tu GTP binding domain DA391_00150 PF09107 Elongation factor SelB, winged helix DA391_00150 PF03144 Elongation factor Tu domain 2 DA391_00155 PF03841 L-seryl-tRNA selenium transferase DA391_00155 PF12390 Selenocysteine synthase N terminal DA391_00160 PF04216 Protein involved in formate dehydrogenase formation DA391_00165 PF01292 Prokaryotic cytochrome b561 DA391_00170 PF13247 4Fe-4S dicluster domain DA391_00170 PF09163 Formate dehydrogenase N, transmembrane DA391_00180 PF02634 FdhD/NarQ family DA391_00185 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain DA391_00185 PF02777 Iron/manganese superoxide dismutases, C-terminal domain DA391_00195 PF02203 Tar ligand binding domain homologue DA391_00195 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DA391_00195 PF00672 HAMP domain DA391_00200 PF03473 MOSC domain DA391_00200 PF03475 3-alpha domain DA391_00210 PF10928 Protein of unknown function (DUF2810) DA391_00215 PF00155 Aminotransferase class I and II DA391_00215 PF00392 Bacterial regulatory proteins, gntR family DA391_00225 PF05068 Mannitol repressor DA391_00230 PF08125 Mannitol dehydrogenase C-terminal domain DA391_00230 PF01232 Mannitol dehydrogenase Rossmann domain DA391_00235 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit DA391_00235 PF02378 Phosphotransferase system, EIIC DA391_00235 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 DA391_00240 PF01757 Acyltransferase family DA391_00245 PF12833 Helix-turn-helix domain DA391_00245 PF01965 DJ-1/PfpI family DA391_00250 PF00857 Isochorismatase family DA391_00255 PF00419 Fimbrial protein DA391_00260 PF13953 PapC C-terminal domain DA391_00260 PF13954 PapC N-terminal domain DA391_00260 PF00577 Outer membrane usher protein DA391_00265 PF02753 Pili assembly chaperone PapD, C-terminal domain DA391_00265 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain DA391_00275 PF00370 FGGY family of carbohydrate kinases, N-terminal domain DA391_00275 PF02782 FGGY family of carbohydrate kinases, C-terminal domain DA391_00285 PF13407 Periplasmic binding protein domain DA391_00290 PF00005 ABC transporter DA391_00295 PF02653 Branched-chain amino acid transport system / permease component DA391_00300 PF12833 Helix-turn-helix domain DA391_00315 PF13286 Phosphohydrolase-associated domain DA391_00315 PF01966 HD domain DA391_00335 PF06508 Queuosine biosynthesis protein QueC DA391_00385 PF06067 Domain of unknown function (DUF932) DA391_00390 PF04002 RadC-like JAB domain DA391_00395 PF06154 CbeA_antitoxin, type IV, cytoskeleton bundling-enhancing factor A DA391_00400 PF06755 CbtA_toxin of type IV toxin-antitoxin system DA391_00415 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB DA391_00415 PF17287 POTRA domain DA391_00415 PF08479 POTRA domain, ShlB-type DA391_00440 PF13454 FAD-NAD(P)-binding DA391_00460 PF08340 Domain of unknown function (DUF1732) DA391_00460 PF03755 YicC-like family, N-terminal region DA391_00465 PF01138 3' exoribonuclease family, domain 1 DA391_00465 PF03725 3' exoribonuclease family, domain 2 DA391_00470 PF00156 Phosphoribosyl transferase domain DA391_00475 PF00375 Sodium:dicarboxylate symporter family DA391_00480 PF05193 Peptidase M16 inactive domain DA391_00480 PF00675 Insulinase (Peptidase family M16) DA391_00485 PF00294 pfkB family carbohydrate kinase DA391_00495 PF01361 Tautomerase enzyme DA391_00500 PF00563 EAL domain DA391_00505 PF05170 AsmA family DA391_00510 PF02611 CDP-diacylglycerol pyrophosphatase DA391_00515 PF03631 Virulence factor BrkB DA391_00520 PF07992 Pyridine nucleotide-disulphide oxidoreductase DA391_00520 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain DA391_00525 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ DA391_00535 PF01432 Peptidase family M3 DA391_00540 PF04445 Putative SAM-dependent methyltransferase DA391_00545 PF00413 Matrixin DA391_00545 PF08548 Peptidase M10 serralysin C terminal DA391_00545 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) DA391_00550 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase DA391_00550 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain DA391_00555 PF00582 Universal stress protein family DA391_00560 PF10625 Universal stress protein B (UspB) DA391_00565 PF01384 Phosphate transporter family DA391_00575 PF00072 Response regulator receiver domain DA391_00575 PF00196 Bacterial regulatory proteins, luxR family DA391_00580 PF00072 Response regulator receiver domain DA391_00580 PF00196 Bacterial regulatory proteins, luxR family DA391_00590 PF03466 LysR substrate binding domain DA391_00590 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DA391_00595 PF07690 Major Facilitator Superfamily DA391_00605 PF00083 Sugar (and other) transporter DA391_00610 PF00171 Aldehyde dehydrogenase family DA391_00615 PF04962 KduI/IolB family DA391_00625 PF00294 pfkB family carbohydrate kinase DA391_00630 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain DA391_00630 PF00205 Thiamine pyrophosphate enzyme, central domain DA391_00630 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain DA391_00635 PF01408 Oxidoreductase family, NAD-binding Rossmann fold DA391_00635 PF02894 Oxidoreductase family, C-terminal alpha/beta domain DA391_00640 PF01261 Xylose isomerase-like TIM barrel DA391_00650 PF00583 Acetyltransferase (GNAT) family DA391_00655 PF02678 Pirin DA391_00655 PF17954 Quercetinase C-terminal cupin domain DA391_00660 PF00356 Bacterial regulatory proteins, lacI family DA391_00660 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family DA391_00665 PF02447 GntP family permease DA391_00670 PF01202 Shikimate kinase DA391_00675 PF01914 MarC family integral membrane protein DA391_00680 PF02774 Semialdehyde dehydrogenase, dimerisation domain DA391_00680 PF01118 Semialdehyde dehydrogenase, NAD binding domain DA391_00685 PF07694 5TMR of 5TMR-LYT DA391_00685 PF06580 Histidine kinase DA391_00690 PF00128 Alpha amylase, catalytic domain DA391_00690 PF02806 Alpha amylase, C-terminal all-beta domain DA391_00690 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) DA391_00695 PF00128 Alpha amylase, catalytic domain DA391_00695 PF18390 Glycogen debranching enzyme C-terminal domain DA391_00695 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) DA391_00700 PF00483 Nucleotidyl transferase DA391_00705 PF08323 Starch synthase catalytic domain DA391_00705 PF00534 Glycosyl transferases group 1 DA391_00710 PF00343 Carbohydrate phosphorylase DA391_00715 PF16901 C-terminal domain of alpha-glycerophosphate oxidase DA391_00715 PF01266 FAD dependent oxidoreductase DA391_00730 PF00455 DeoR C terminal sensor domain DA391_00730 PF08220 DeoR-like helix-turn-helix domain DA391_00735 PF01694 Rhomboid family DA391_00735 PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease DA391_00740 PF00581 Rhodanese-like domain DA391_00750 PF17874 MalT-like TPR region DA391_00750 PF00196 Bacterial regulatory proteins, luxR family DA391_00755 PF00343 Carbohydrate phosphorylase DA391_00760 PF02446 4-alpha-glucanotransferase DA391_00765 PF01106 NifU-like domain DA391_00765 PF01521 Iron-sulphur cluster biosynthesis DA391_00770 PF00156 Phosphoribosyl transferase domain DA391_00775 PF00561 alpha/beta hydrolase fold DA391_00780 PF07338 Protein of unknown function (DUF1471) DA391_00785 PF09012 FeoC like transcriptional regulator DA391_00790 PF07664 Ferrous iron transport protein B C terminus DA391_00790 PF17910 FeoB cytosolic helical domain DA391_00790 PF02421 Ferrous iron transport protein B DA391_00790 PF07670 Nucleoside recognition DA391_00795 PF04023 FeoA domain DA391_00800 PF17674 HHH domain DA391_00800 PF00575 S1 RNA binding domain DA391_00800 PF09371 Tex-like protein N-terminal domain DA391_00800 PF16921 Tex protein YqgF-like domain DA391_00805 PF01272 Transcription elongation factor, GreA/GreB, C-term DA391_00805 PF03449 Transcription elongation factor, N-terminal DA391_00810 PF00072 Response regulator receiver domain DA391_00810 PF00486 Transcriptional regulatory protein, C terminal DA391_00815 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DA391_00815 PF00512 His Kinase A (phospho-acceptor) domain DA391_00815 PF00672 HAMP domain DA391_00830 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain DA391_00835 PF13953 PapC C-terminal domain DA391_00835 PF13954 PapC N-terminal domain DA391_00835 PF00577 Outer membrane usher protein DA391_00855 PF01293 Phosphoenolpyruvate carboxykinase DA391_00860 PF01430 Hsp33 protein DA391_00865 PF01479 S4 domain DA391_00870 PF13419 Haloacid dehalogenase-like hydrolase DA391_00875 PF07095 Intracellular growth attenuator protein IgaA DA391_00880 PF00293 NUDIX domain DA391_00885 PF00912 Transglycosylase DA391_00885 PF00905 Penicillin binding protein transpeptidase domain DA391_00885 PF17092 Penicillin-binding protein OB-like domain DA391_00910 PF00263 Bacterial type II and III secretion system protein DA391_00910 PF03958 Bacterial type II/III secretion system short domain DA391_00915 PF01202 Shikimate kinase DA391_00920 PF01761 3-dehydroquinate synthase DA391_00925 PF05036 Sporulation related domain DA391_00930 PF02086 D12 class N6 adenine-specific DNA methyltransferase DA391_00935 PF00834 Ribulose-phosphate 3 epimerase family DA391_00940 PF13419 Haloacid dehalogenase-like hydrolase DA391_00945 PF00579 tRNA synthetases class I (W and Y) DA391_00950 PF14824 Sirohaem biosynthesis protein central DA391_00950 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases DA391_00950 PF10414 Sirohaem synthase dimerisation region DA391_00955 PF01226 Formate/nitrite transporter DA391_00960 PF13806 Rieske-like [2Fe-2S] domain DA391_00965 PF18267 Rubredoxin NAD+ reductase C-terminal domain DA391_00965 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain DA391_00965 PF01077 Nitrite and sulphite reductase 4Fe-4S domain DA391_00965 PF07992 Pyridine nucleotide-disulphide oxidoreductase DA391_00965 PF04324 BFD-like [2Fe-2S] binding domain DA391_00975 PF07969 Amidohydrolase family DA391_00980 PF07690 Major Facilitator Superfamily DA391_00990 PF00593 TonB dependent receptor DA391_00990 PF07715 TonB-dependent Receptor Plug Domain DA391_00995 PF00356 Bacterial regulatory proteins, lacI family DA391_01000 PF11975 Family 4 glycosyl hydrolase C-terminal domain DA391_01000 PF02056 Family 4 glycosyl hydrolase DA391_01005 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD DA391_01010 PF05872 Bacterial protein of unknown function (DUF853) DA391_01015 PF00117 Glutamine amidotransferase class-I DA391_01020 PF00202 Aminotransferase class-III DA391_01055 PF09134 Invasin, domain 3 DA391_01055 PF11924 Inverse autotransporter, beta-domain DA391_01055 PF02369 Bacterial Ig-like domain (group 1) DA391_01065 PF12951 Passenger-associated-transport-repeat DA391_01070 PF12805 FUSC-like inner membrane protein yccS DA391_01075 PF13545 Crp-like helix-turn-helix domain DA391_01075 PF00027 Cyclic nucleotide-binding domain DA391_01080 PF02566 OsmC-like protein DA391_01085 PF00485 Phosphoribulokinase / Uridine kinase family DA391_01090 PF06794 Uncharacterised protein family (UPF0270) DA391_01095 PF00561 alpha/beta hydrolase fold DA391_01100 PF01810 LysE type translocator DA391_01105 PF02567 Phenazine biosynthesis-like protein DA391_01110 PF04069 Substrate binding domain of ABC-type glycine betaine transport system DA391_01115 PF00005 ABC transporter DA391_01120 PF00528 Binding-protein-dependent transport system inner membrane component DA391_01125 PF02668 Taurine catabolism dioxygenase TauD, TfdA family DA391_01135 PF00005 ABC transporter DA391_01135 PF12848 ABC transporter DA391_01140 PF02525 Flavodoxin-like fold DA391_01145 PF02254 TrkA-N domain DA391_01145 PF00999 Sodium/hydrogen exchanger family DA391_01150 PF09526 Probable metal-binding protein (DUF2387) DA391_01155 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase DA391_01160 PF04102 SlyX DA391_01165 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase DA391_01165 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase DA391_01170 PF08348 YheO-like PAS domain DA391_01170 PF13309 HTH domain DA391_01175 PF02635 DsrE/DsrF-like family DA391_01180 PF02635 DsrE/DsrF-like family DA391_01185 PF04077 DsrH like protein DA391_01190 PF00164 Ribosomal protein S12/S23 DA391_01195 PF00177 Ribosomal protein S7p/S5e DA391_01200 PF03144 Elongation factor Tu domain 2 DA391_01200 PF03764 Elongation factor G, domain IV DA391_01200 PF14492 Elongation Factor G, domain II DA391_01200 PF00679 Elongation factor G C-terminus DA391_01200 PF00009 Elongation factor Tu GTP binding domain DA391_01210 PF00009 Elongation factor Tu GTP binding domain DA391_01210 PF03143 Elongation factor Tu C-terminal domain DA391_01210 PF03144 Elongation factor Tu domain 2 DA391_01215 PF04324 BFD-like [2Fe-2S] binding domain DA391_01220 PF00210 Ferritin-like domain DA391_01225 PF00338 Ribosomal protein S10p/S20e DA391_01230 PF00297 Ribosomal protein L3 DA391_01235 PF00573 Ribosomal protein L4/L1 family DA391_01240 PF00276 Ribosomal protein L23 DA391_01245 PF00181 Ribosomal Proteins L2, RNA binding domain DA391_01245 PF03947 Ribosomal Proteins L2, C-terminal domain DA391_01250 PF00203 Ribosomal protein S19 DA391_01255 PF00237 Ribosomal protein L22p/L17e DA391_01260 PF07650 KH domain DA391_01260 PF00189 Ribosomal protein S3, C-terminal domain DA391_01265 PF00252 Ribosomal protein L16p/L10e DA391_01270 PF00831 Ribosomal L29 protein DA391_01275 PF00366 Ribosomal protein S17 DA391_01280 PF00238 Ribosomal protein L14p/L23e DA391_01285 PF00467 KOW motif DA391_01285 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 DA391_01290 PF00673 ribosomal L5P family C-terminus DA391_01290 PF00281 Ribosomal protein L5 DA391_01295 PF00253 Ribosomal protein S14p/S29e DA391_01300 PF00410 Ribosomal protein S8 DA391_01305 PF00347 Ribosomal protein L6 DA391_01310 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast DA391_01315 PF00333 Ribosomal protein S5, N-terminal domain DA391_01315 PF03719 Ribosomal protein S5, C-terminal domain DA391_01320 PF00327 Ribosomal protein L30p/L7e DA391_01325 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A DA391_01330 PF00344 SecY translocase DA391_01335 PF00444 Ribosomal protein L36 DA391_01340 PF00416 Ribosomal protein S13/S18 DA391_01345 PF00411 Ribosomal protein S11 DA391_01350 PF01479 S4 domain DA391_01350 PF00163 Ribosomal protein S4/S9 N-terminal domain DA391_01355 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain DA391_01355 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain DA391_01355 PF01000 RNA polymerase Rpb3/RpoA insert domain DA391_01360 PF01196 Ribosomal protein L17 DA391_01365 PF09350 Domain of unknown function (DUF1992) DA391_01370 PF13411 MerR HTH family regulatory protein DA391_01375 PF03889 Alternative ribosome-rescue factor A DA391_01380 PF01741 Large-conductance mechanosensitive channel, MscL DA391_01385 PF02254 TrkA-N domain DA391_01385 PF02080 TrkA-C domain DA391_01390 PF01029 NusB family DA391_01390 PF01189 16S rRNA methyltransferase RsmB/F DA391_01395 PF02911 Formyl transferase, C-terminal domain DA391_01395 PF00551 Formyl transferase DA391_01400 PF01327 Polypeptide deformylase DA391_01405 PF02481 DNA recombination-mediator protein A DA391_01405 PF17782 DprA winged helix domain DA391_01410 PF04361 Protein of unknown function (DUF494) DA391_01415 PF01396 Topoisomerase DNA binding C4 zinc finger DA391_01420 PF01300 Telomere recombination DA391_01425 PF18317 Shikimate 5'-dehydrogenase C-terminal domain DA391_01425 PF01488 Shikimate / quinate 5-dehydrogenase DA391_01425 PF08501 Shikimate dehydrogenase substrate binding domain DA391_01430 PF00132 Bacterial transferase hexapeptide (six repeats) DA391_01470 PF04204 Homoserine O-succinyltransferase DA391_01475 PF01274 Malate synthase DA391_01480 PF00463 Isocitrate lyase family DA391_01485 PF06315 Isocitrate dehydrogenase kinase/phosphatase (AceK) DA391_01490 PF01614 Bacterial transcriptional regulator DA391_01490 PF09339 IclR helix-turn-helix domain DA391_01495 PF02965 Vitamin B12 dependent methionine synthase, activation domain DA391_01495 PF02574 Homocysteine S-methyltransferase DA391_01495 PF02607 B12 binding domain DA391_01495 PF00809 Pterin binding enzyme DA391_01495 PF02310 B12 binding domain DA391_01500 PF01758 Sodium Bile acid symporter family DA391_01505 PF01842 ACT domain DA391_01505 PF00696 Amino acid kinase family DA391_01510 PF00342 Phosphoglucose isomerase DA391_01515 PF06146 Phosphate-starvation-inducible E DA391_01520 PF00528 Binding-protein-dependent transport system inner membrane component DA391_01525 PF14785 Maltose transport system permease protein MalF P2 domain DA391_01525 PF00528 Binding-protein-dependent transport system inner membrane component DA391_01530 PF01547 Bacterial extracellular solute-binding protein DA391_01540 PF00005 ABC transporter DA391_01540 PF17912 MalK OB fold domain DA391_01545 PF02264 LamB porin DA391_01550 PF07148 Maltose operon periplasmic protein precursor (MalM) DA391_01555 PF04345 Chorismate lyase DA391_01560 PF01040 UbiA prenyltransferase family DA391_01565 PF01553 Acyltransferase DA391_01570 PF01219 Prokaryotic diacylglycerol kinase DA391_01575 PF00717 Peptidase S24-like DA391_01575 PF01726 LexA DNA binding domain DA391_01580 PF05532 CsbD-like DA391_01585 PF01475 Ferric uptake regulator family DA391_01590 PF03797 Autotransporter beta-domain DA391_01595 PF01207 Dihydrouridine synthase (Dus) DA391_01600 PF09583 Phage shock protein G (Phageshock_PspG) DA391_01605 PF00107 Zinc-binding dehydrogenase DA391_01605 PF08240 Alcohol dehydrogenase GroES-like domain DA391_01610 PF03796 DnaB-like helicase C terminal domain DA391_01610 PF00772 DnaB-like helicase N terminal domain DA391_01615 PF00842 Alanine racemase, C-terminal domain DA391_01615 PF01168 Alanine racemase, N-terminal domain DA391_01620 PF00155 Aminotransferase class I and II DA391_01625 PF04237 YjbR DA391_01630 PF17760 UvrA interaction domain DA391_01630 PF17755 UvrA DNA-binding domain DA391_01630 PF00005 ABC transporter DA391_01635 PF00436 Single-strand binding protein family DA391_01655 PF00860 Permease family DA391_01660 PF00999 Sodium/hydrogen exchanger family DA391_01665 PF03466 LysR substrate binding domain DA391_01665 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DA391_01670 PF03788 LrgA family DA391_01675 PF04172 LrgB-like family DA391_01680 PF00005 ABC transporter DA391_01685 PF00528 Binding-protein-dependent transport system inner membrane component DA391_01690 PF00528 Binding-protein-dependent transport system inner membrane component DA391_01695 PF00497 Bacterial extracellular solute-binding proteins, family 3 DA391_01705 PF03279 Bacterial lipid A biosynthesis acyltransferase DA391_01715 PF00005 ABC transporter DA391_01720 PF02653 Branched-chain amino acid transport system / permease component DA391_01730 PF00370 FGGY family of carbohydrate kinases, N-terminal domain DA391_01730 PF02782 FGGY family of carbohydrate kinases, C-terminal domain DA391_01735 PF00571 CBS domain DA391_01735 PF01380 SIS domain DA391_01740 PF00939 Sodium:sulfate symporter transmembrane region DA391_01745 PF00313 'Cold-shock' DNA-binding domain DA391_01750 PF00313 'Cold-shock' DNA-binding domain DA391_01760 PF05433 Glycine zipper 2TM domain DA391_01765 PF00072 Response regulator receiver domain DA391_01765 PF00990 Diguanylate cyclase, GGDEF domain DA391_01775 PF02954 Bacterial regulatory protein, Fis family DA391_01780 PF01207 Dihydrouridine synthase (Dus) DA391_01790 PF00474 Sodium:solute symporter family DA391_01795 PF06196 Protein of unknown function (DUF997) DA391_01800 PF02785 Biotin carboxylase C-terminal domain DA391_01800 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain DA391_01800 PF00289 Biotin carboxylase, N-terminal domain DA391_01805 PF00364 Biotin-requiring enzyme DA391_01810 PF01220 Dehydroquinase class II DA391_01815 PF01794 Ferric reductase like transmembrane component DA391_01820 PF00174 Oxidoreductase molybdopterin binding domain DA391_01825 PF00107 Zinc-binding dehydrogenase DA391_01825 PF08240 Alcohol dehydrogenase GroES-like domain DA391_01830 PF17157 Gammaproteobacterial periplasmic sensor domain DA391_01830 PF00563 EAL domain DA391_01830 PF00990 Diguanylate cyclase, GGDEF domain DA391_01840 PF04085 rod shape-determining protein MreC DA391_01845 PF04093 rod shape-determining protein MreD DA391_01850 PF02545 Maf-like protein DA391_01855 PF00575 S1 RNA binding domain DA391_01855 PF10150 Ribonuclease E/G family DA391_01860 PF13502 AsmA-like C-terminal region DA391_01860 PF13116 Protein of unknown function DA391_01865 PF00795 Carbon-nitrogen hydrolase DA391_01870 PF01523 Putative modulator of DNA gyrase DA391_01875 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DA391_01875 PF03466 LysR substrate binding domain DA391_01880 PF07869 Protein of unknown function (DUF1656) DA391_01885 PF13533 Biotin-lipoyl like DA391_01890 PF04632 Fusaric acid resistance protein family DA391_01895 PF00171 Aldehyde dehydrogenase family DA391_01905 PF01337 Barstar (barnase inhibitor) DA391_01910 PF04751 Protein of unknown function (DUF615) DA391_01915 PF01523 Putative modulator of DNA gyrase DA391_01925 PF07361 Cytochrome b562 DA391_01930 PF01272 Transcription elongation factor, GreA/GreB, C-term DA391_01930 PF14760 Rnk N-terminus DA391_01960 PF01979 Amidohydrolase family DA391_01965 PF03841 L-seryl-tRNA selenium transferase DA391_01970 PF07071 KDGP aldolase DA391_01975 PF08279 HTH domain DA391_01975 PF05043 Mga helix-turn-helix domain DA391_01975 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 DA391_01975 PF00874 PRD domain DA391_01990 PF00690 Cation transporter/ATPase, N-terminus DA391_01990 PF00689 Cation transporting ATPase, C-terminus DA391_01995 PF00356 Bacterial regulatory proteins, lacI family DA391_02000 PF02378 Phosphotransferase system, EIIC DA391_02000 PF00367 phosphotransferase system, EIIB DA391_02005 PF00128 Alpha amylase, catalytic domain DA391_02005 PF11941 Domain of unknown function (DUF3459) DA391_02010 PF00700 Bacterial flagellin C-terminal helical region DA391_02010 PF08884 Flagellin D3 domain DA391_02010 PF00669 Bacterial flagellin N-terminal helical region DA391_02025 PF14403 Circularly permuted ATP-grasp type 2 DA391_02025 PF04168 A predicted alpha-helical domain with a conserved ER motif. DA391_02030 PF14403 Circularly permuted ATP-grasp type 2 DA391_02035 PF01042 Endoribonuclease L-PSP DA391_02040 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain DA391_02040 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain DA391_02045 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain DA391_02045 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain DA391_02055 PF00381 PTS HPr component phosphorylation site DA391_02060 PF03668 P-loop ATPase protein family DA391_02065 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 DA391_02070 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein DA391_02075 PF04552 Sigma-54, DNA binding domain DA391_02075 PF00309 Sigma-54 factor, Activator interacting domain (AID) DA391_02075 PF04963 Sigma-54 factor, core binding domain DA391_02080 PF12399 Branched-chain amino acid ATP-binding cassette transporter DA391_02080 PF00005 ABC transporter DA391_02085 PF03968 OstA-like protein DA391_02090 PF06835 Lipopolysaccharide-assembly, LptC-related DA391_02100 PF01380 SIS domain DA391_02100 PF00571 CBS domain DA391_02105 PF01699 Sodium/calcium exchanger protein DA391_02110 PF00005 ABC transporter DA391_02115 PF02405 Permease MlaE DA391_02120 PF02470 MlaD protein DA391_02125 PF05494 MlaC protein DA391_02130 PF13466 STAS domain DA391_02135 PF01722 BolA-like protein DA391_02140 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) DA391_02145 PF13180 PDZ domain DA391_02150 PF00595 PDZ domain DA391_02150 PF13180 PDZ domain DA391_02155 PF06295 Protein of unknown function (DUF1043) DA391_02160 PF03969 AFG1-like ATPase DA391_02165 PF00572 Ribosomal protein L13 DA391_02170 PF00380 Ribosomal protein S9/S16 DA391_02180 PF00043 Glutathione S-transferase, C-terminal domain DA391_02180 PF02798 Glutathione S-transferase, N-terminal domain DA391_02185 PF04386 Stringent starvation protein B DA391_02195 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster DA391_02195 PF07992 Pyridine nucleotide-disulphide oxidoreductase DA391_02200 PF01645 Conserved region in glutamate synthase DA391_02200 PF04898 Glutamate synthase central domain DA391_02200 PF00310 Glutamine amidotransferases class-II DA391_02200 PF01493 GXGXG motif DA391_02205 PF16199 Radical_SAM C-terminal domain DA391_02205 PF04055 Radical SAM superfamily DA391_02210 PF00072 Response regulator receiver domain DA391_02210 PF00989 PAS fold DA391_02210 PF01627 Hpt domain DA391_02210 PF18415 Histidine kinase receptor ArcB trans-membrane domain DA391_02210 PF00512 His Kinase A (phospho-acceptor) domain DA391_02210 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DA391_02225 PF00912 Transglycosylase DA391_02230 PF04972 BON domain DA391_02235 PF13580 SIS domain DA391_02240 PF02021 Uncharacterised protein family UPF0102 DA391_02245 PF04348 LppC putative lipoprotein DA391_02250 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases DA391_02275 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DA391_02275 PF03466 LysR substrate binding domain DA391_02285 PF08240 Alcohol dehydrogenase GroES-like domain DA391_02285 PF00107 Zinc-binding dehydrogenase DA391_02290 PF02678 Pirin DA391_02290 PF17954 Quercetinase C-terminal cupin domain DA391_02295 PF03466 LysR substrate binding domain DA391_02295 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DA391_02300 PF13409 Glutathione S-transferase, N-terminal domain DA391_02305 PF07681 DoxX DA391_02310 PF13997 YqjK-like protein DA391_02315 PF07332 Putative Actinobacterial Holin-X, holin superfamily III DA391_02320 PF05957 Bacterial protein of unknown function (DUF883) DA391_02330 PF13721 SecD export protein N-terminal TM region DA391_02335 PF09335 SNARE associated Golgi protein DA391_02345 PF07729 FCD domain DA391_02345 PF00392 Bacterial regulatory proteins, gntR family DA391_02350 PF07690 Major Facilitator Superfamily DA391_02355 PF02614 Glucuronate isomerase DA391_02360 PF01232 Mannitol dehydrogenase Rossmann domain DA391_02360 PF08125 Mannitol dehydrogenase C-terminal domain DA391_02365 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus DA391_02365 PF08666 SAF domain DA391_02370 PF10688 Bacterial inner membrane protein DA391_02375 PF00375 Sodium:dicarboxylate symporter family DA391_02380 PF03741 Integral membrane protein TerC family DA391_02390 PF01408 Oxidoreductase family, NAD-binding Rossmann fold DA391_02395 PF01863 Protein of unknown function DUF45 DA391_02400 PF05175 Methyltransferase small domain DA391_02405 PF13018 Extended Signal Peptide of Type V secretion system DA391_02405 PF03797 Autotransporter beta-domain DA391_02405 PF16168 Adhesin of bacterial autotransporter system, probable stalk DA391_02410 PF00724 NADH:flavin oxidoreductase / NADH oxidase family DA391_02410 PF07992 Pyridine nucleotide-disulphide oxidoreductase DA391_02415 PF03729 Short repeat of unknown function (DUF308) DA391_02425 PF01081 KDPG and KHG aldolase DA391_02430 PF07690 Major Facilitator Superfamily DA391_02445 PF00465 Iron-containing alcohol dehydrogenase DA391_02450 PF00155 Aminotransferase class I and II DA391_02465 PF00589 Phage integrase family DA391_02465 PF02899 Phage integrase, N-terminal SAM-like domain DA391_02480 PF06892 Phage regulatory protein CII (CP76) DA391_02500 PF05840 Bacteriophage replication gene A protein (GPA) DA391_02605 PF06114 IrrE N-terminal-like domain DA391_02650 PF13700 Domain of unknown function (DUF4158) DA391_02650 PF01526 Tn3 transposase DDE domain DA391_02655 PF00239 Resolvase, N terminal domain DA391_02655 PF02796 Helix-turn-helix domain of resolvase DA391_02665 PF00580 UvrD/REP helicase N-terminal domain DA391_02665 PF13361 UvrD-like helicase C-terminal domain DA391_02705 PF04606 Ogr/Delta-like zinc finger DA391_02715 PF04542 Sigma-70 region 2 DA391_02715 PF04546 Sigma-70, non-essential region DA391_02715 PF04539 Sigma-70 region 3 DA391_02715 PF04545 Sigma-70, region 4 DA391_02715 PF03979 Sigma-70 factor, region 1.1 DA391_02715 PF00140 Sigma-70 factor, region 1.2 DA391_02720 PF08275 DNA primase catalytic core, N-terminal domain DA391_02720 PF10410 DnaB-helicase binding domain of primase DA391_02720 PF01807 CHC2 zinc finger DA391_02720 PF08278 DNA primase DnaG DnaB-binding DA391_02725 PF01165 Ribosomal protein S21 DA391_02730 PF00814 Glycoprotease family DA391_02735 PF02660 Glycerol-3-phosphate acyltransferase DA391_02740 PF02152 Dihydroneopterin aldolase DA391_02745 PF02673 Bacitracin resistance protein BacA DA391_02750 PF12627 Probable RNA and SrmB- binding site of polymerase A DA391_02750 PF01743 Poly A polymerase head domain DA391_02750 PF01966 HD domain DA391_02755 PF08239 Bacterial SH3 domain DA391_02760 PF01928 CYTH domain DA391_02765 PF03710 Glutamate-ammonia ligase adenylyltransferase DA391_02765 PF08335 GlnD PII-uridylyltransferase DA391_02770 PF01467 Cytidylyltransferase-like DA391_02770 PF00294 pfkB family carbohydrate kinase DA391_02780 PF13520 Amino acid permease DA391_02785 PF04380 Membrane fusogenic activity DA391_02790 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase DA391_02795 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase DA391_02800 PF03738 Glutathionylspermidine synthase preATP-grasp DA391_02805 PF06693 Protein of unknown function (DUF1190) DA391_02810 PF02321 Outer membrane efflux protein DA391_02815 PF00293 NUDIX domain DA391_02820 PF06853 Protein of unknown function (DUF1249) DA391_02825 PF00149 Calcineurin-like phosphoesterase DA391_02830 PF05728 Uncharacterised protein family (UPF0227) DA391_02835 PF01751 Toprim domain DA391_02835 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DA391_02835 PF00204 DNA gyrase B DA391_02835 PF00986 DNA gyrase B subunit, carboxyl terminus DA391_02840 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DA391_02840 PF03466 LysR substrate binding domain DA391_02845 PF03992 Antibiotic biosynthesis monooxygenase DA391_02850 PF02525 Flavodoxin-like fold DA391_02855 PF03989 DNA gyrase C-terminal domain, beta-propeller DA391_02855 PF00521 DNA gyrase/topoisomerase IV, subunit A DA391_02860 PF01553 Acyltransferase DA391_02870 PF07732 Multicopper oxidase DA391_02870 PF07731 Multicopper oxidase DA391_02880 PF04055 Radical SAM superfamily DA391_02880 PF11842 Domain of unknown function (DUF3362) DA391_02880 PF08497 Radical SAM N-terminal DA391_02885 PF00248 Aldo/keto reductase family DA391_02890 PF00465 Iron-containing alcohol dehydrogenase DA391_02895 PF12833 Helix-turn-helix domain DA391_02895 PF06719 AraC-type transcriptional regulator N-terminus DA391_02900 PF09335 SNARE associated Golgi protein DA391_02905 PF01053 Cys/Met metabolism PLP-dependent enzyme DA391_02910 PF01618 MotA/TolQ/ExbB proton channel family DA391_02915 PF02472 Biopolymer transport protein ExbD/TolR DA391_02950 PF00437 Type II/IV secretion system protein DA391_02965 PF13629 Pilus formation protein N terminal region DA391_02965 PF00263 Bacterial type II and III secretion system protein DA391_02965 PF04972 BON domain DA391_02990 PF00873 AcrB/AcrD/AcrF family DA391_02995 PF00529 HlyD membrane-fusion protein of T1SS DA391_02995 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion DA391_03015 PF11806 Domain of unknown function (DUF3327) DA391_03015 PF00756 Putative esterase DA391_03030 PF00005 ABC transporter DA391_03035 PF01032 FecCD transport family DA391_03040 PF01032 FecCD transport family DA391_03045 PF07690 Major Facilitator Superfamily DA391_03050 PF00294 pfkB family carbohydrate kinase DA391_03060 PF00356 Bacterial regulatory proteins, lacI family DA391_03065 PF01497 Periplasmic binding protein DA391_03070 PF00672 HAMP domain DA391_03070 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DA391_03070 PF02203 Tar ligand binding domain homologue DA391_03085 PF05433 Glycine zipper 2TM domain DA391_03090 PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal DA391_03090 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit DA391_03095 PF13247 4Fe-4S dicluster domain DA391_03100 PF03916 Polysulphide reductase, NrfD DA391_03105 PF00374 Nickel-dependent hydrogenase DA391_03110 PF01750 Hydrogenase maturation protease DA391_03115 PF11939 [NiFe]-hydrogenase assembly, chaperone, HybE DA391_03120 PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA DA391_03125 PF02492 CobW/HypB/UreG, nucleotide-binding domain DA391_03130 PF01455 HupF/HypC family DA391_03135 PF01924 Hydrogenase formation hypA family DA391_03140 PF00586 AIR synthase related protein, N-terminal domain DA391_03140 PF02769 AIR synthase related protein, C-terminal domain DA391_03145 PF07503 HypF finger DA391_03145 PF01300 Telomere recombination DA391_03145 PF17788 HypF Kae1-like domain DA391_03145 PF00708 Acylphosphatase DA391_03150 PF11769 Protein of unknown function (DUF3313) DA391_03160 PF00939 Sodium:sulfate symporter transmembrane region DA391_03165 PF05683 Fumarase C-terminus DA391_03170 PF05681 Fumarate hydratase (Fumerase) DA391_03175 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DA391_03175 PF03466 LysR substrate binding domain DA391_03180 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion DA391_03180 PF00529 HlyD membrane-fusion protein of T1SS DA391_03185 PF00873 AcrB/AcrD/AcrF family DA391_03190 PF00324 Amino acid permease DA391_03195 PF06751 Ethanolamine ammonia lyase large subunit (EutB) DA391_03200 PF05985 Ethanolamine ammonia-lyase light chain (EutC) DA391_03205 PF08946 Osmosensory transporter coiled coil DA391_03205 PF00083 Sugar (and other) transporter DA391_03215 PF03797 Autotransporter beta-domain DA391_03220 PF02690 Na+/Pi-cotransporter DA391_03225 PF01156 Inosine-uridine preferring nucleoside hydrolase DA391_03230 PF00356 Bacterial regulatory proteins, lacI family DA391_03235 PF00083 Sugar (and other) transporter DA391_03235 PF07690 Major Facilitator Superfamily DA391_03240 PF01497 Periplasmic binding protein DA391_03245 PF01032 FecCD transport family DA391_03250 PF01032 FecCD transport family DA391_03255 PF00005 ABC transporter DA391_03260 PF00557 Metallopeptidase family M24 DA391_03275 PF01116 Fructose-bisphosphate aldolase class-II DA391_03280 PF01380 SIS domain DA391_03285 PF01979 Amidohydrolase family DA391_03290 PF03610 PTS system fructose IIA component DA391_03295 PF03613 PTS system mannose/fructose/sorbose family IID component DA391_03300 PF03609 PTS system sorbose-specific iic component DA391_03305 PF03830 PTS system sorbose subfamily IIB component DA391_03310 PF08013 Tagatose 6 phosphate kinase DA391_03320 PF08220 DeoR-like helix-turn-helix domain DA391_03320 PF00455 DeoR C terminal sensor domain DA391_03325 PF01209 ubiE/COQ5 methyltransferase family DA391_03330 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle DA391_03335 PF00528 Binding-protein-dependent transport system inner membrane component DA391_03340 PF00528 Binding-protein-dependent transport system inner membrane component DA391_03340 PF12911 N-terminal TM domain of oligopeptide transport permease C DA391_03345 PF00005 ABC transporter DA391_03350 PF00005 ABC transporter DA391_03355 PF08479 POTRA domain, ShlB-type DA391_03355 PF17287 POTRA domain DA391_03355 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB DA391_03370 PF05594 Haemagluttinin repeat DA391_03370 PF04829 Pre-toxin domain with VENN motif DA391_03370 PF15526 Novel toxin 21 DA391_03370 PF05860 haemagglutination activity domain DA391_03370 PF13332 Hemagglutinin repeat DA391_03375 PF18228 CdiI N-terminal domain DA391_03405 PF13332 Hemagglutinin repeat DA391_03405 PF05860 haemagglutination activity domain DA391_03405 PF04829 Pre-toxin domain with VENN motif DA391_03440 PF13488 Glycine zipper DA391_03440 PF00691 OmpA family DA391_03450 PF10431 C-terminal, D2-small domain, of ClpB protein DA391_03450 PF17871 AAA lid domain DA391_03450 PF07724 AAA domain (Cdc48 subfamily) DA391_03450 PF00004 ATPase family associated with various cellular activities (AAA) DA391_03470 PF01476 LysM domain DA391_03470 PF00877 NlpC/P60 family DA391_03530 PF01979 Amidohydrolase family DA391_03540 PF00529 HlyD membrane-fusion protein of T1SS DA391_03540 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion DA391_03545 PF04632 Fusaric acid resistance protein family DA391_03570 PF02369 Bacterial Ig-like domain (group 1) DA391_03570 PF09134 Invasin, domain 3 DA391_03570 PF07979 Intimin C-type lectin domain DA391_03570 PF11924 Inverse autotransporter, beta-domain DA391_03580 PF01569 PAP2 superfamily DA391_03605 PF00437 Type II/IV secretion system protein DA391_03615 PF13629 Pilus formation protein N terminal region DA391_03615 PF04972 BON domain DA391_03615 PF00263 Bacterial type II and III secretion system protein DA391_03660 PF00005 ABC transporter DA391_03665 PF00528 Binding-protein-dependent transport system inner membrane component DA391_03690 PF09134 Invasin, domain 3 DA391_03690 PF02369 Bacterial Ig-like domain (group 1) DA391_03690 PF11924 Inverse autotransporter, beta-domain DA391_03720 PF02203 Tar ligand binding domain homologue DA391_03720 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DA391_03720 PF00672 HAMP domain DA391_03725 PF00072 Response regulator receiver domain DA391_03725 PF00196 Bacterial regulatory proteins, luxR family DA391_03750 PF04316 Anti-sigma-28 factor, FlgM DA391_03760 PF00460 Flagella basal body rod protein DA391_03765 PF06429 Flagellar basal body rod FlgEFG protein C-terminal DA391_03765 PF00460 Flagella basal body rod protein DA391_03770 PF03963 Flagellar hook capping protein - N-terminal region DA391_03770 PF13860 FlgD Ig-like domain DA391_03770 PF13861 FlgD Tudor-like domain DA391_03775 PF00460 Flagella basal body rod protein DA391_03775 PF07559 Flagellar basal body protein FlaE DA391_03775 PF06429 Flagellar basal body rod FlgEFG protein C-terminal DA391_03780 PF06429 Flagellar basal body rod FlgEFG protein C-terminal DA391_03780 PF00460 Flagella basal body rod protein DA391_03785 PF00460 Flagella basal body rod protein DA391_03785 PF06429 Flagellar basal body rod FlgEFG protein C-terminal DA391_03790 PF02107 Flagellar L-ring protein DA391_03795 PF02119 Flagellar P-ring protein DA391_03800 PF10135 Rod binding protein DA391_03800 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase DA391_03805 PF06429 Flagellar basal body rod FlgEFG protein C-terminal DA391_03805 PF00460 Flagella basal body rod protein DA391_03810 PF00669 Bacterial flagellin N-terminal helical region DA391_03815 PF04542 Sigma-70 region 2 DA391_03815 PF04539 Sigma-70 region 3 DA391_03815 PF04545 Sigma-70, region 4 DA391_03820 PF05247 Flagellar transcriptional activator (FlhD) DA391_03825 PF05280 Flagellar transcriptional activator (FlhC) DA391_03830 PF01618 MotA/TolQ/ExbB proton channel family DA391_03835 PF13677 Membrane MotB of proton-channel complex MotA/MotB DA391_03835 PF00691 OmpA family DA391_03840 PF01584 CheW-like domain DA391_03840 PF02895 Signal transducing histidine kinase, homodimeric domain DA391_03840 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DA391_03840 PF01627 Hpt domain DA391_03840 PF09078 CheY binding DA391_03845 PF01584 CheW-like domain DA391_03855 PF02743 Cache domain DA391_03855 PF00672 HAMP domain DA391_03855 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DA391_03860 PF00669 Bacterial flagellin N-terminal helical region DA391_03860 PF08884 Flagellin D3 domain DA391_03860 PF00700 Bacterial flagellin C-terminal helical region DA391_03870 PF07195 Flagellar hook-associated protein 2 C-terminus DA391_03870 PF07196 Flagellin hook IN motif DA391_03870 PF02465 Flagellar hook-associated protein 2 N-terminus DA391_03875 PF02561 Flagellar protein FliS DA391_03890 PF00771 FHIPEP family DA391_03895 PF01312 FlhB HrpN YscU SpaS Family DA391_03900 PF04344 Chemotaxis phosphatase, CheZ DA391_03905 PF00072 Response regulator receiver domain DA391_03910 PF00072 Response regulator receiver domain DA391_03910 PF01339 CheB methylesterase DA391_03915 PF03705 CheR methyltransferase, all-alpha domain DA391_03915 PF01739 CheR methyltransferase, SAM binding domain DA391_03920 PF02049 Flagellar hook-basal body complex protein FliE DA391_03925 PF01514 Secretory protein of YscJ/FliF family DA391_03925 PF08345 Flagellar M-ring protein C-terminal DA391_03930 PF14842 FliG N-terminal domain DA391_03930 PF01706 FliG C-terminal domain DA391_03930 PF14841 FliG middle domain DA391_03935 PF02108 Flagellar assembly protein FliH DA391_03940 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain DA391_03940 PF18269 T3SS EscN ATPase C-terminal domain DA391_03950 PF02120 Flagellar hook-length control protein FliK DA391_03955 PF03748 Flagellar basal body-associated protein FliL DA391_03960 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term DA391_03960 PF02154 Flagellar motor switch protein FliM DA391_03965 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term DA391_03965 PF16973 Flagellar motor switch protein FliN N-terminal DA391_03970 PF04347 Flagellar biosynthesis protein, FliO DA391_03975 PF00813 FliP family DA391_03980 PF01313 Bacterial export proteins, family 3 DA391_03985 PF01311 Bacterial export proteins, family 1 DA391_03995 PF00072 Response regulator receiver domain DA391_03995 PF00486 Transcriptional regulatory protein, C terminal DA391_04005 PF00144 Beta-lactamase DA391_04010 PF03466 LysR substrate binding domain DA391_04010 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DA391_04015 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component DA391_04025 PF03480 Bacterial extracellular solute-binding protein, family 7 DA391_04030 PF04962 KduI/IolB family DA391_04040 PF01408 Oxidoreductase family, NAD-binding Rossmann fold DA391_04040 PF02894 Oxidoreductase family, C-terminal alpha/beta domain DA391_04045 PF14583 Oligogalacturonate lyase DA391_04050 PF13416 Bacterial extracellular solute-binding protein DA391_04055 PF01261 Xylose isomerase-like TIM barrel DA391_04060 PF01053 Cys/Met metabolism PLP-dependent enzyme DA391_04065 PF03222 Tryptophan/tyrosine permease family DA391_04070 PF03466 LysR substrate binding domain DA391_04070 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DA391_04085 PF13443 Cro/C1-type HTH DNA-binding domain DA391_04100 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain DA391_04100 PF02753 Pili assembly chaperone PapD, C-terminal domain DA391_04105 PF13954 PapC N-terminal domain DA391_04105 PF00577 Outer membrane usher protein DA391_04105 PF13953 PapC C-terminal domain DA391_04120 PF00072 Response regulator receiver domain DA391_04120 PF00196 Bacterial regulatory proteins, luxR family DA391_04145 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain DA391_04145 PF01276 Orn/Lys/Arg decarboxylase, major domain DA391_04145 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain DA391_04150 PF01464 Transglycosylase SLT domain DA391_04150 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain DA391_04155 PF04362 Bacterial Fe(2+) trafficking DA391_04160 PF00633 Helix-hairpin-helix motif DA391_04160 PF14815 NUDIX domain DA391_04160 PF00730 HhH-GPD superfamily base excision DNA repair protein DA391_04160 PF10576 Iron-sulfur binding domain of endonuclease III DA391_04165 PF02390 Putative methyltransferase DA391_04170 PF04320 Protein with unknown function (DUF469) DA391_04175 PF04960 Glutaminase DA391_04180 PF11101 Protein of unknown function (DUF2884) DA391_04185 PF04055 Radical SAM superfamily DA391_04185 PF06969 HemN C-terminal domain DA391_04190 PF01725 Ham1 family DA391_04195 PF02594 Uncharacterised ACR, YggU family COG1872 DA391_04200 PF02325 YGGT family DA391_04205 PF14748 Pyrroline-5-carboxylate reductase dimerisation DA391_04205 PF03807 NADP oxidoreductase coenzyme F420-dependent DA391_04210 PF01168 Alanine racemase, N-terminal domain DA391_04215 PF00437 Type II/IV secretion system protein DA391_04220 PF04371 Porphyromonas-type peptidyl-arginine deiminase DA391_04225 PF00795 Carbon-nitrogen hydrolase DA391_04230 PF03652 Holliday junction resolvase DA391_04235 PF02622 Uncharacterized ACR, COG1678 DA391_04240 PF02951 Prokaryotic glutathione synthetase, N-terminal domain DA391_04240 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain DA391_04245 PF04452 RNA methyltransferase DA391_04250 PF04231 Endonuclease I DA391_04255 PF10263 SprT-like family DA391_04255 PF17283 SprT-like zinc ribbon domain DA391_04265 PF04143 Sulphur transport DA391_04275 PF02772 S-adenosylmethionine synthetase, central domain DA391_04275 PF00438 S-adenosylmethionine synthetase, N-terminal domain DA391_04275 PF02773 S-adenosylmethionine synthetase, C-terminal domain DA391_04280 PF17944 Arginine decarboxylase C-terminal helical extension DA391_04280 PF17810 Arginine decarboxylase helical bundle domain DA391_04280 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain DA391_04285 PF00355 Rieske [2Fe-2S] domain DA391_04290 PF01435 Peptidase family M48 DA391_04295 PF02780 Transketolase, C-terminal domain DA391_04295 PF02779 Transketolase, pyrimidine binding domain DA391_04295 PF00456 Transketolase, thiamine diphosphate binding domain DA391_04300 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain DA391_04300 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain DA391_04305 PF00162 Phosphoglycerate kinase DA391_04310 PF01116 Fructose-bisphosphate aldolase class-II DA391_04320 PF00924 Mechanosensitive ion channel DA391_04320 PF05552 Conserved TM helix DA391_04325 PF01810 LysE type translocator DA391_04330 PF04402 Protein of unknown function (DUF541) DA391_04335 PF03466 LysR substrate binding domain DA391_04335 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DA391_04340 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) DA391_04345 PF01842 ACT domain DA391_04345 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain DA391_04345 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain DA391_04350 PF01812 5-formyltetrahydrofolate cyclo-ligase family DA391_04360 PF05164 Cell division protein ZapA DA391_04365 PF03695 Uncharacterised protein family (UPF0149) DA391_04370 PF00557 Metallopeptidase family M24 DA391_04370 PF05195 Aminopeptidase P, N-terminal domain DA391_04375 PF01494 FAD binding domain DA391_04380 PF01494 FAD binding domain DA391_04385 PF01571 Aminomethyltransferase folate-binding domain DA391_04385 PF08669 Glycine cleavage T-protein C-terminal barrel domain DA391_04390 PF01597 Glycine cleavage H-protein DA391_04395 PF02347 Glycine cleavage system P-protein DA391_04405 PF03006 Haemolysin-III related DA391_04410 PF01571 Aminomethyltransferase folate-binding domain DA391_04415 PF03937 Flavinator of succinate dehydrogenase DA391_04420 PF07254 Membrane-bound toxin component of toxin-antitoxin system DA391_04425 PF00072 Response regulator receiver domain DA391_04425 PF00486 Transcriptional regulatory protein, C terminal DA391_04430 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DA391_04430 PF00512 His Kinase A (phospho-acceptor) domain DA391_04430 PF00672 HAMP domain DA391_04435 PF06123 Inner membrane protein CreD DA391_04440 PF00258 Flavodoxin DA391_04445 PF02899 Phage integrase, N-terminal SAM-like domain DA391_04445 PF00589 Phage integrase family DA391_04450 PF10411 Disulfide bond isomerase protein N-terminus DA391_04450 PF13098 Thioredoxin-like domain DA391_04455 PF17768 RecJ OB domain DA391_04455 PF02272 DHHA1 domain DA391_04455 PF01368 DHH family DA391_04465 PF01336 OB-fold nucleic acid binding domain DA391_04465 PF00152 tRNA synthetases class II (D, K and N) DA391_04480 PF00248 Aldo/keto reductase family DA391_04495 PF00561 alpha/beta hydrolase fold DA391_04500 PF00990 Diguanylate cyclase, GGDEF domain DA391_04500 PF08448 PAS fold DA391_04505 PF01037 Lrp/AsnC ligand binding domain DA391_04515 PF16338 Domain of unknown function (DUF4968) DA391_04515 PF17137 Domain of unknown function (DUF5110) DA391_04515 PF01055 Glycosyl hydrolases family 31 DA391_04515 PF13802 Galactose mutarotase-like DA391_04520 PF07690 Major Facilitator Superfamily DA391_04525 PF00356 Bacterial regulatory proteins, lacI family DA391_04530 PF00226 DnaJ domain DA391_04530 PF01556 DnaJ C terminal domain DA391_04545 PF01638 HxlR-like helix-turn-helix DA391_04555 PF01478 Type IV leader peptidase family DA391_04555 PF06750 Bacterial Peptidase A24 N-terminal domain DA391_04585 PF03466 LysR substrate binding domain DA391_04585 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DA391_04590 PF07690 Major Facilitator Superfamily DA391_04595 PF03466 LysR substrate binding domain DA391_04595 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DA391_04605 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain DA391_04605 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain DA391_04610 PF00356 Bacterial regulatory proteins, lacI family DA391_04615 PF01568 Molydopterin dinucleotide binding domain DA391_04615 PF00384 Molybdopterin oxidoreductase DA391_04620 PF13193 AMP-binding enzyme C-terminal domain DA391_04620 PF00501 AMP-binding enzyme DA391_04620 PF01553 Acyltransferase DA391_04625 PF07690 Major Facilitator Superfamily DA391_04630 PF01381 Helix-turn-helix DA391_04635 PF00248 Aldo/keto reductase family DA391_04640 PF03741 Integral membrane protein TerC family DA391_04645 PF02976 DNA mismatch repair enzyme MutH DA391_04655 PF00293 NUDIX domain DA391_04660 PF00391 PEP-utilising enzyme, mobile domain DA391_04660 PF02896 PEP-utilising enzyme, TIM barrel domain DA391_04660 PF01590 GAF domain DA391_04660 PF05524 PEP-utilising enzyme, N-terminal DA391_04665 PF01790 Prolipoprotein diacylglyceryl transferase DA391_04670 PF00303 Thymidylate synthase DA391_04675 PF07963 Prokaryotic N-terminal methylation motif DA391_04675 PF00114 Pilin (bacterial filament) DA391_04695 PF17946 RecC C-terminal domain DA391_04700 PF05193 Peptidase M16 inactive domain DA391_04700 PF16187 Middle or third domain of peptidase_M16 DA391_04700 PF00675 Insulinase (Peptidase family M16) DA391_04705 PF12705 PD-(D/E)XK nuclease superfamily DA391_04705 PF13361 UvrD-like helicase C-terminal domain DA391_04705 PF00580 UvrD/REP helicase N-terminal domain DA391_04710 PF13538 UvrD-like helicase C-terminal domain DA391_04715 PF00583 Acetyltransferase (GNAT) family DA391_04715 PF00696 Amino acid kinase family DA391_04720 PF01520 N-acetylmuramoyl-L-alanine amidase DA391_04720 PF11741 AMIN domain DA391_04740 PF06725 3D domain DA391_04740 PF03562 MltA specific insert domain DA391_04745 PF00899 ThiF family DA391_04750 PF02657 Fe-S metabolism associated domain DA391_04755 PF00266 Aminotransferase class-V DA391_04760 PF06004 Bacterial protein of unknown function (DUF903) DA391_04765 PF03466 LysR substrate binding domain DA391_04765 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DA391_04770 PF04241 Protein of unknown function (DUF423) DA391_04775 PF01728 FtsJ-like methyltransferase DA391_04775 PF18125 RlmM ferredoxin-like domain DA391_04780 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain DA391_04780 PF01367 5'-3' exonuclease, C-terminal SAM fold DA391_04785 PF11892 Domain of unknown function (DUF3412) DA391_04785 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases DA391_04785 PF03641 Possible lysine decarboxylase DA391_04790 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term DA391_04790 PF14489 QueF-like protein DA391_04795 PF07348 Syd protein (SUKH-2) DA391_04800 PF04287 tRNA pseudouridine synthase C DA391_04805 PF00849 RNA pseudouridylate synthase DA391_04810 PF00258 Flavodoxin DA391_04820 PF11944 Protein of unknown function (DUF3461) DA391_04825 PF14602 Hexapeptide repeat of succinyl-transferase DA391_04825 PF00132 Bacterial transferase hexapeptide (six repeats) DA391_04825 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal DA391_04830 PF01966 HD domain DA391_04830 PF08335 GlnD PII-uridylyltransferase DA391_04830 PF01842 ACT domain DA391_04830 PF01909 Nucleotidyltransferase domain DA391_04835 PF00557 Metallopeptidase family M24 DA391_04845 PF00318 Ribosomal protein S2 DA391_04850 PF00889 Elongation factor TS DA391_04855 PF00696 Amino acid kinase family DA391_04860 PF01765 Ribosome recycling factor DA391_04865 PF13288 DXP reductoisomerase C-terminal domain DA391_04865 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain DA391_04865 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase DA391_04870 PF01255 Putative undecaprenyl diphosphate synthase DA391_04880 PF02163 Peptidase family M50 DA391_04880 PF17820 PDZ domain DA391_04885 PF07244 Surface antigen variable number repeat DA391_04885 PF01103 Surface antigen DA391_04890 PF03938 Outer membrane protein (OmpH-like) DA391_04895 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD DA391_04895 PF00132 Bacterial transferase hexapeptide (six repeats) DA391_04900 PF07977 FabA-like domain DA391_04905 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 DA391_04905 PF00132 Bacterial transferase hexapeptide (six repeats) DA391_04910 PF02684 Lipid-A-disaccharide synthetase DA391_04915 PF01351 Ribonuclease HII DA391_04920 PF14579 Helix-hairpin-helix motif DA391_04920 PF07733 Bacterial DNA polymerase III alpha NTPase domain DA391_04920 PF01336 OB-fold nucleic acid binding domain DA391_04920 PF02811 PHP domain DA391_04920 PF17657 Bacterial DNA polymerase III alpha subunit finger domain DA391_04925 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit DA391_04930 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily DA391_04935 PF09179 TilS substrate binding domain DA391_04935 PF01171 PP-loop family DA391_04935 PF11734 TilS substrate C-terminal domain DA391_04940 PF00034 Cytochrome c DA391_04945 PF07073 Modulator of Rho-dependent transcription termination (ROF) DA391_04950 PF06786 Uncharacterised protein family (UPF0253) DA391_04955 PF07152 YaeQ protein DA391_04960 PF00472 RF-1 domain DA391_04965 PF04170 NlpE N-terminal domain DA391_04965 PF17185 NlpE C-terminal OB domain DA391_04970 PF04073 Aminoacyl-tRNA editing domain DA391_04970 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) DA391_04970 PF03129 Anticodon binding domain DA391_04975 PF01980 tRNA-methyltransferase O DA391_04975 PF18389 TrmO C-terminal domain DA391_04980 PF16358 RcsF lipoprotein DA391_04985 PF03180 NLPA lipoprotein DA391_04990 PF00528 Binding-protein-dependent transport system inner membrane component DA391_04995 PF09383 NIL domain DA391_04995 PF00005 ABC transporter DA391_05040 PF03466 LysR substrate binding domain DA391_05040 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DA391_05045 PF00248 Aldo/keto reductase family DA391_05050 PF03372 Endonuclease/Exonuclease/phosphatase family DA391_05055 PF01476 LysM domain DA391_05055 PF01464 Transglycosylase SLT domain DA391_05060 PF16123 Hydroxyacylglutathione hydrolase C-terminus DA391_05060 PF00753 Metallo-beta-lactamase superfamily DA391_05065 PF08241 Methyltransferase domain DA391_05070 PF00075 RNase H DA391_05075 PF00929 Exonuclease DA391_05085 PF04069 Substrate binding domain of ABC-type glycine betaine transport system DA391_05090 PF00528 Binding-protein-dependent transport system inner membrane component DA391_05095 PF00571 CBS domain DA391_05095 PF00005 ABC transporter DA391_05100 PF00268 Ribonucleotide reductase, small chain DA391_05105 PF08343 Ribonucleotide reductase N-terminal DA391_05105 PF02867 Ribonucleotide reductase, barrel domain DA391_05105 PF00317 Ribonucleotide reductase, all-alpha domain DA391_05110 PF07972 NrdI Flavodoxin like DA391_05120 PF02627 Carboxymuconolactone decarboxylase family DA391_05125 PF00155 Aminotransferase class I and II DA391_05125 PF00392 Bacterial regulatory proteins, gntR family DA391_05130 PF05957 Bacterial protein of unknown function (DUF883) DA391_05135 PF06392 Acid shock protein repeat DA391_05140 PF09400 Protein of unknown function (DUF2002) DA391_05145 PF06711 Protein of unknown function (DUF1198) DA391_05155 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle DA391_05160 PF00528 Binding-protein-dependent transport system inner membrane component DA391_05165 PF00528 Binding-protein-dependent transport system inner membrane component DA391_05165 PF12911 N-terminal TM domain of oligopeptide transport permease C DA391_05170 PF00005 ABC transporter DA391_05175 PF00005 ABC transporter DA391_05185 PF00547 Urease, gamma subunit DA391_05190 PF00699 Urease beta subunit DA391_05195 PF01979 Amidohydrolase family DA391_05195 PF00449 Urease alpha-subunit, N-terminal domain DA391_05200 PF05194 UreE urease accessory protein, C-terminal domain DA391_05200 PF02814 UreE urease accessory protein, N-terminal domain DA391_05205 PF01730 UreF DA391_05210 PF02492 CobW/HypB/UreG, nucleotide-binding domain DA391_05215 PF01774 UreD urease accessory protein DA391_05220 PF03253 Urea transporter DA391_05225 PF03824 High-affinity nickel-transport protein DA391_05230 PF06411 HdeA/HdeB family DA391_05235 PF02254 TrkA-N domain DA391_05235 PF07885 Ion channel DA391_05240 PF02537 CrcB-like protein, Camphor Resistance (CrcB) DA391_05245 PF02537 CrcB-like protein, Camphor Resistance (CrcB) DA391_05250 PF07995 Glucose / Sorbosone dehydrogenase DA391_05255 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit DA391_05260 PF02378 Phosphotransferase system, EIIC DA391_05265 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit DA391_05270 PF12833 Helix-turn-helix domain DA391_05270 PF07883 Cupin domain DA391_05275 PF04794 YdjC-like protein DA391_05285 PF08281 Sigma-70, region 4 DA391_05285 PF04542 Sigma-70 region 2 DA391_05290 PF04773 FecR protein DA391_05290 PF16220 Domain of unknown function (DUF4880) DA391_05295 PF00593 TonB dependent receptor DA391_05295 PF07660 Secretin and TonB N terminus short domain DA391_05295 PF07715 TonB-dependent Receptor Plug Domain DA391_05300 PF01497 Periplasmic binding protein DA391_05305 PF01032 FecCD transport family DA391_05310 PF01032 FecCD transport family DA391_05315 PF00005 ABC transporter DA391_05330 PF13411 MerR HTH family regulatory protein DA391_05345 PF01042 Endoribonuclease L-PSP DA391_05365 PF07728 AAA domain (dynein-related subfamily) DA391_05370 PF00145 C-5 cytosine-specific DNA methylase DA391_05370 PF01381 Helix-turn-helix DA391_05415 PF01668 SmpB protein DA391_05420 PF03364 Polyketide cyclase / dehydrase and lipid transport DA391_05425 PF03658 RnfH family Ubiquitin DA391_05430 PF04355 SmpA / OmlA family DA391_05435 PF02463 RecF/RecN/SMC N terminal domain DA391_05440 PF01513 ATP-NAD kinase DA391_05445 PF01025 GrpE DA391_05450 PF03167 Uracil DNA glycosylase superfamily DA391_05460 PF01228 Glycine radical DA391_05465 PF00270 DEAD/DEAH box helicase DA391_05465 PF00271 Helicase conserved C-terminal domain DA391_05470 PF05175 Methyltransferase small domain DA391_05475 PF02910 Fumarate reductase flavoprotein C-term DA391_05475 PF00890 FAD binding domain DA391_05480 PF04542 Sigma-70 region 2 DA391_05480 PF08281 Sigma-70, region 4 DA391_05485 PF03873 Anti sigma-E protein RseA, C-terminal domain DA391_05485 PF03872 Anti sigma-E protein RseA, N-terminal domain DA391_05490 PF03888 MucB/RseB N-terminal domain DA391_05490 PF17188 MucB/RseB C-terminal domain DA391_05505 PF00679 Elongation factor G C-terminus DA391_05505 PF00009 Elongation factor Tu GTP binding domain DA391_05505 PF06421 GTP-binding protein LepA C-terminus DA391_05505 PF03144 Elongation factor Tu domain 2 DA391_05510 PF10502 Signal peptidase, peptidase S26 DA391_05515 PF00035 Double-stranded RNA binding motif DA391_05515 PF14622 Ribonuclease-III-like DA391_05520 PF07650 KH domain DA391_05520 PF01926 50S ribosome-binding GTPase DA391_05525 PF02565 Recombination protein O C terminal DA391_05525 PF11967 Recombination protein O N terminal DA391_05530 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ DA391_05535 PF01648 4'-phosphopantetheinyl transferase superfamily DA391_05540 PF12838 4Fe-4S dicluster domain DA391_05545 PF01380 SIS domain DA391_05545 PF01418 Helix-turn-helix domain, rpiR family DA391_05555 PF14437 MafB19-like deaminase DA391_05560 PF01464 Transglycosylase SLT domain DA391_05560 PF00497 Bacterial extracellular solute-binding proteins, family 3 DA391_05565 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal DA391_05565 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain DA391_05565 PF02769 AIR synthase related protein, C-terminal domain DA391_05575 PF00512 His Kinase A (phospho-acceptor) domain DA391_05575 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DA391_05580 PF13942 YfhG lipoprotein DA391_05585 PF00072 Response regulator receiver domain DA391_05585 PF00158 Sigma-54 interaction domain DA391_05590 PF00795 Carbon-nitrogen hydrolase DA391_05590 PF02540 NAD synthase DA391_05595 PF00543 Nitrogen regulatory protein P-II DA391_05600 PF10797 Protein of unknown function DA391_05605 PF10941 Protein of unknown function DUF2620 DA391_05610 PF02126 Phosphotriesterase family DA391_05615 PF01168 Alanine racemase, N-terminal domain DA391_05625 PF14502 Helix-turn-helix domain DA391_05625 PF14503 YhfZ C-terminal domain DA391_05630 PF00175 Oxidoreductase NAD-binding domain DA391_05630 PF00042 Globin DA391_05630 PF00970 Oxidoreductase FAD-binding domain DA391_05640 PF00464 Serine hydroxymethyltransferase DA391_05645 PF12832 MFS_1 like family DA391_05650 PF00874 PRD domain DA391_05655 PF06226 Protein of unknown function (DUF1007) DA391_05660 PF03824 High-affinity nickel-transport protein DA391_05665 PF00459 Inositol monophosphatase family DA391_05670 PF00588 SpoU rRNA Methylase family DA391_05675 PF02082 Transcriptional regulator DA391_05680 PF00266 Aminotransferase class-V DA391_05685 PF01592 NifU-like N terminal domain DA391_05690 PF01521 Iron-sulphur cluster biosynthesis DA391_05695 PF00226 DnaJ domain DA391_05695 PF07743 HSCB C-terminal oligomerisation domain DA391_05700 PF00012 Hsp70 protein DA391_05705 PF00111 2Fe-2S iron-sulfur cluster binding domain DA391_05710 PF04384 Iron-sulphur cluster assembly DA391_05715 PF00883 Cytosol aminopeptidase family, catalytic domain DA391_05715 PF12404 Peptidase DA391_05720 PF14581 SseB protein C-terminal domain DA391_05720 PF07179 SseB protein N-terminal domain DA391_05725 PF03212 Pertactin DA391_05725 PF16168 Adhesin of bacterial autotransporter system, probable stalk DA391_05725 PF03797 Autotransporter beta-domain DA391_05730 PF00207 Alpha-2-macroglobulin family DA391_05730 PF07703 Alpha-2-macroglobulin bait region domain DA391_05730 PF17970 Bacterial Alpha-2-macroglobulin MG1 domain DA391_05730 PF17973 Bacterial Alpha-2-macroglobulin MG10 domain DA391_05730 PF17972 Bacterial Alpha-2-macroglobulin MG5 domain DA391_05730 PF17962 Bacterial macroglobulin domain 6 DA391_05730 PF01835 MG2 domain DA391_05730 PF11974 Bacterial alpha-2-macroglobulin MG3 domain DA391_05730 PF07678 A-macroglobulin TED domain DA391_05735 PF06832 Penicillin-Binding Protein C-terminus Family DA391_05735 PF00912 Transglycosylase DA391_05735 PF00905 Penicillin binding protein transpeptidase domain DA391_05745 PF00334 Nucleoside diphosphate kinase DA391_05750 PF04055 Radical SAM superfamily DA391_05760 PF13464 Domain of unknown function (DUF4115) DA391_05765 PF04551 GcpE protein DA391_05770 PF03129 Anticodon binding domain DA391_05770 PF13393 Histidyl-tRNA synthetase DA391_05775 PF09976 Tetratricopeptide repeat-like domain DA391_05780 PF13360 PQQ-like domain DA391_05785 PF01926 50S ribosome-binding GTPase DA391_05785 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal DA391_05795 PF07191 zinc-ribbons DA391_05800 PF13742 OB-fold nucleic acid binding domain DA391_05800 PF02601 Exonuclease VII, large subunit DA391_05805 PF00478 IMP dehydrogenase / GMP reductase domain DA391_05805 PF00571 CBS domain DA391_05810 PF00958 GMP synthase C terminal domain DA391_05810 PF02540 NAD synthase DA391_05810 PF00117 Glutamine amidotransferase class-I DA391_05820 PF00486 Transcriptional regulatory protein, C terminal DA391_05830 PF00196 Bacterial regulatory proteins, luxR family DA391_05830 PF00072 Response regulator receiver domain DA391_05845 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain DA391_05845 PF02753 Pili assembly chaperone PapD, C-terminal domain DA391_05855 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain DA391_05855 PF02753 Pili assembly chaperone PapD, C-terminal domain DA391_05860 PF02753 Pili assembly chaperone PapD, C-terminal domain DA391_05860 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain DA391_05865 PF00577 Outer membrane usher protein DA391_05865 PF13954 PapC N-terminal domain DA391_05865 PF13953 PapC C-terminal domain DA391_05875 PF08543 Phosphomethylpyrimidine kinase DA391_05890 PF00571 CBS domain DA391_05890 PF01380 SIS domain DA391_05895 PF00455 DeoR C terminal sensor domain DA391_05895 PF08220 DeoR-like helix-turn-helix domain DA391_05900 PF06923 Glucitol operon activator protein (GutM) DA391_05905 PF00106 short chain dehydrogenase DA391_05910 PF03829 PTS system glucitol/sorbitol-specific IIA component DA391_05915 PF07663 Sorbitol phosphotransferase enzyme II C-terminus DA391_05915 PF03612 Sorbitol phosphotransferase enzyme II N-terminus DA391_05920 PF03608 PTS system enzyme II sorbitol-specific factor DA391_05925 PF00781 Diacylglycerol kinase catalytic domain DA391_05935 PF07411 Domain of unknown function (DUF1508) DA391_05940 PF00072 Response regulator receiver domain DA391_05940 PF00486 Transcriptional regulatory protein, C terminal DA391_05945 PF00672 HAMP domain DA391_05945 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DA391_05945 PF00512 His Kinase A (phospho-acceptor) domain DA391_05950 PF07690 Major Facilitator Superfamily DA391_05955 PF00873 AcrB/AcrD/AcrF family DA391_05960 PF00873 AcrB/AcrD/AcrF family DA391_05965 PF13533 Biotin-lipoyl like DA391_05975 PF13954 PapC N-terminal domain DA391_05975 PF00577 Outer membrane usher protein DA391_05975 PF13953 PapC C-terminal domain DA391_05980 PF02753 Pili assembly chaperone PapD, C-terminal domain DA391_05980 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain DA391_05990 PF00012 Hsp70 protein DA391_05995 PF00990 Diguanylate cyclase, GGDEF domain DA391_05995 PF08448 PAS fold DA391_05995 PF13426 PAS domain DA391_05995 PF00563 EAL domain DA391_05995 PF05231 MASE1 DA391_05995 PF08447 PAS fold DA391_06000 PF00571 CBS domain DA391_06000 PF03448 MgtE intracellular N domain DA391_06000 PF01769 Divalent cation transporter DA391_06010 PF02541 Ppx/GppA phosphatase family DA391_06015 PF02503 Polyphosphate kinase middle domain DA391_06015 PF13090 Polyphosphate kinase C-terminal domain 2 DA391_06015 PF13089 Polyphosphate kinase N-terminal domain DA391_06015 PF17941 Polyphosphate kinase C-terminal domain 1 DA391_06020 PF00528 Binding-protein-dependent transport system inner membrane component DA391_06025 PF00528 Binding-protein-dependent transport system inner membrane component DA391_06030 PF00005 ABC transporter DA391_06035 PF13302 Acetyltransferase (GNAT) domain DA391_06040 PF00551 Formyl transferase DA391_06045 PF00586 AIR synthase related protein, N-terminal domain DA391_06045 PF02769 AIR synthase related protein, C-terminal domain DA391_06060 PF00860 Permease family DA391_06065 PF00308 Bacterial dnaA protein DA391_06070 PF03960 ArsC family DA391_06075 PF07720 Tetratricopeptide repeat DA391_06075 PF01435 Peptidase family M48 DA391_06080 PF01594 AI-2E family transporter DA391_06085 PF00578 AhpC/TSA family DA391_06090 PF01842 ACT domain DA391_06095 PF00701 Dihydrodipicolinate synthetase family DA391_06100 PF06804 NlpB/DapX lipoprotein DA391_06105 PF01259 SAICAR synthetase DA391_06110 PF04228 Putative neutral zinc metallopeptidase DA391_06115 PF04284 Protein of unknown function (DUF441) DA391_06120 PF13718 GNAT acetyltransferase 2 DA391_06120 PF05127 Helicase DA391_06120 PF17176 tRNA-binding domain DA391_06125 PF02230 Phospholipase/Carboxylesterase DA391_06130 PF13980 Uncharacterised protein family (UPF0370) DA391_06135 PF02557 D-alanyl-D-alanine carboxypeptidase DA391_06140 PF01546 Peptidase family M20/M25/M40 DA391_06140 PF07687 Peptidase dimerisation domain DA391_06145 PF03960 ArsC family DA391_06150 PF03466 LysR substrate binding domain DA391_06150 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DA391_06155 PF00196 Bacterial regulatory proteins, luxR family DA391_06170 PF00528 Binding-protein-dependent transport system inner membrane component DA391_06175 PF08402 TOBE domain DA391_06175 PF00005 ABC transporter DA391_06185 PF00873 AcrB/AcrD/AcrF family DA391_06195 PF00072 Response regulator receiver domain DA391_06195 PF00196 Bacterial regulatory proteins, luxR family DA391_06200 PF00037 4Fe-4S binding domain DA391_06200 PF12800 4Fe-4S binding domain DA391_06200 PF13187 4Fe-4S dicluster domain DA391_06205 PF03927 NapD protein DA391_06210 PF01568 Molydopterin dinucleotide binding domain DA391_06210 PF04879 Molybdopterin oxidoreductase Fe4S4 domain DA391_06210 PF10518 TAT (twin-arginine translocation) pathway signal sequence DA391_06210 PF00384 Molybdopterin oxidoreductase DA391_06215 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) DA391_06220 PF03264 NapC/NirT cytochrome c family, N-terminal region DA391_06225 PF00293 NUDIX domain DA391_06230 PF03949 Malic enzyme, NAD binding domain DA391_06230 PF01515 Phosphate acetyl/butaryl transferase DA391_06230 PF00390 Malic enzyme, N-terminal domain DA391_06235 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 DA391_06240 PF01218 Coproporphyrinogen III oxidase DA391_06245 PF00583 Acetyltransferase (GNAT) family DA391_06250 PF13407 Periplasmic binding protein domain DA391_06255 PF00005 ABC transporter DA391_06260 PF02653 Branched-chain amino acid transport system / permease component DA391_06270 PF02894 Oxidoreductase family, C-terminal alpha/beta domain DA391_06270 PF01408 Oxidoreductase family, NAD-binding Rossmann fold DA391_06275 PF00248 Aldo/keto reductase family DA391_06280 PF00581 Rhodanese-like domain DA391_06285 PF00106 short chain dehydrogenase DA391_06290 PF04076 Bacterial OB fold (BOF) protein DA391_06295 PF06572 Protein of unknown function (DUF1131) DA391_06300 PF04261 Dyp-type peroxidase family DA391_06305 PF00701 Dihydrodipicolinate synthetase family DA391_06310 PF04131 Putative N-acetylmannosamine-6-phosphate epimerase DA391_06315 PF00480 ROK family DA391_06320 PF04074 YhcH/YjgK/YiaL DA391_06330 PF01380 SIS domain DA391_06330 PF01418 Helix-turn-helix domain, rpiR family DA391_06335 PF07690 Major Facilitator Superfamily DA391_06345 PF00528 Binding-protein-dependent transport system inner membrane component DA391_06350 PF00528 Binding-protein-dependent transport system inner membrane component DA391_06355 PF00005 ABC transporter DA391_06360 PF00291 Pyridoxal-phosphate dependent enzyme DA391_06370 PF02563 Polysaccharide biosynthesis/export protein DA391_06370 PF10531 SLBB domain DA391_06375 PF05159 Capsule polysaccharide biosynthesis protein DA391_06380 PF05159 Capsule polysaccharide biosynthesis protein DA391_06385 PF00535 Glycosyl transferase family 2 DA391_06395 PF17101 Stealth protein CR1, conserved region 1 DA391_06395 PF11380 Stealth protein CR2, conserved region 2 DA391_06400 PF00005 ABC transporter DA391_06405 PF01061 ABC-2 type transporter DA391_06410 PF12704 MacB-like periplasmic core domain DA391_06410 PF00005 ABC transporter DA391_06410 PF02687 FtsX-like permease family DA391_06415 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion DA391_06420 PF00486 Transcriptional regulatory protein, C terminal DA391_06420 PF00072 Response regulator receiver domain DA391_06425 PF00512 His Kinase A (phospho-acceptor) domain DA391_06425 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DA391_06425 PF00672 HAMP domain DA391_06425 PF16527 Two-component sensor protein CpxA, periplasmic domain DA391_06430 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 DA391_06435 PF02896 PEP-utilising enzyme, TIM barrel domain DA391_06435 PF05524 PEP-utilising enzyme, N-terminal DA391_06435 PF00391 PEP-utilising enzyme, mobile domain DA391_06440 PF00381 PTS HPr component phosphorylation site DA391_06445 PF00291 Pyridoxal-phosphate dependent enzyme DA391_06455 PF04354 ZipA, C-terminal FtsZ-binding domain DA391_06460 PF03120 NAD-dependent DNA ligase OB-fold domain DA391_06460 PF03119 NAD-dependent DNA ligase C4 zinc finger domain DA391_06460 PF01653 NAD-dependent DNA ligase adenylation domain DA391_06460 PF00533 BRCA1 C Terminus (BRCT) domain DA391_06460 PF12826 Helix-hairpin-helix motif DA391_06465 PF12843 Putative quorum-sensing-regulated virulence factor DA391_06495 PF00749 tRNA synthetases class I (E and Q), catalytic domain DA391_06530 PF01773 Na+ dependent nucleoside transporter N-terminus DA391_06530 PF07662 Na+ dependent nucleoside transporter C-terminus DA391_06530 PF07670 Nucleoside recognition DA391_06540 PF01566 Natural resistance-associated macrophage protein DA391_06550 PF00248 Aldo/keto reductase family DA391_06555 PF00205 Thiamine pyrophosphate enzyme, central domain DA391_06555 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain DA391_06555 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain DA391_06560 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DA391_06560 PF03466 LysR substrate binding domain DA391_06570 PF02685 Glucokinase DA391_06575 PF06296 RelE toxin of RelE / RelB toxin-antitoxin system DA391_06585 PF07690 Major Facilitator Superfamily DA391_06590 PF00072 Response regulator receiver domain DA391_06590 PF04397 LytTr DNA-binding domain DA391_06595 PF07694 5TMR of 5TMR-LYT DA391_06595 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DA391_06595 PF06580 Histidine kinase DA391_06600 PF07350 Protein of unknown function (DUF1479) DA391_06610 PF00155 Aminotransferase class I and II DA391_06615 PF01292 Prokaryotic cytochrome b561 DA391_06630 PF00367 phosphotransferase system, EIIB DA391_06630 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 DA391_06630 PF02378 Phosphotransferase system, EIIC DA391_06635 PF00232 Glycosyl hydrolase family 1 DA391_06645 PF00300 Histidine phosphatase superfamily (branch 1) DA391_06650 PF03783 Curli production assembly/transport component CsgG DA391_06660 PF05643 Putative bacterial lipoprotein (DUF799) DA391_06675 PF04976 DMSO reductase anchor subunit (DmsC) DA391_06680 PF13247 4Fe-4S dicluster domain DA391_06680 PF12800 4Fe-4S binding domain DA391_06685 PF01568 Molydopterin dinucleotide binding domain DA391_06685 PF00384 Molybdopterin oxidoreductase DA391_06685 PF04879 Molybdopterin oxidoreductase Fe4S4 domain DA391_06690 PF00874 PRD domain DA391_06690 PF03123 CAT RNA binding domain DA391_06700 PF13406 Transglycosylase SLT domain DA391_06705 PF00324 Amino acid permease DA391_06710 PF07969 Amidohydrolase family DA391_06720 PF07690 Major Facilitator Superfamily DA391_06725 PF02405 Permease MlaE DA391_06730 PF00005 ABC transporter DA391_06745 PF01292 Prokaryotic cytochrome b561 DA391_06750 PF04264 YceI-like domain DA391_06755 PF00356 Bacterial regulatory proteins, lacI family DA391_06760 PF02378 Phosphotransferase system, EIIC DA391_06760 PF00367 phosphotransferase system, EIIB DA391_06765 PF00232 Glycosyl hydrolase family 1 DA391_06775 PF03551 Transcriptional regulator PadR-like family DA391_06780 PF03831 PhnA domain DA391_06780 PF08274 PhnA Zinc-Ribbon DA391_06785 PF13649 Methyltransferase domain DA391_06790 PF00282 Pyridoxal-dependent decarboxylase conserved domain DA391_06795 PF13520 Amino acid permease DA391_06810 PF01914 MarC family integral membrane protein DA391_06820 PF00072 Response regulator receiver domain DA391_06820 PF01627 Hpt domain DA391_06820 PF00497 Bacterial extracellular solute-binding proteins, family 3 DA391_06820 PF00512 His Kinase A (phospho-acceptor) domain DA391_06820 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DA391_06825 PF00196 Bacterial regulatory proteins, luxR family DA391_06825 PF00072 Response regulator receiver domain DA391_06830 PF02665 Nitrate reductase gamma subunit DA391_06835 PF02613 Nitrate reductase delta subunit DA391_06840 PF14711 Respiratory nitrate reductase beta C-terminal DA391_06840 PF13247 4Fe-4S dicluster domain DA391_06845 PF00384 Molybdopterin oxidoreductase DA391_06845 PF01568 Molydopterin dinucleotide binding domain DA391_06845 PF14710 Respiratory nitrate reductase alpha N-terminal DA391_06850 PF07690 Major Facilitator Superfamily DA391_06855 PF00196 Bacterial regulatory proteins, luxR family DA391_06855 PF00072 Response regulator receiver domain DA391_06860 PF03264 NapC/NirT cytochrome c family, N-terminal region DA391_06865 PF00384 Molybdopterin oxidoreductase DA391_06865 PF01568 Molydopterin dinucleotide binding domain DA391_06865 PF18364 Molybdopterin oxidoreductase N-terminal domain DA391_06875 PF01226 Formate/nitrite transporter DA391_06880 PF00005 ABC transporter DA391_06885 PF03379 CcmB protein DA391_06890 PF01578 Cytochrome C assembly protein DA391_06895 PF04995 Heme exporter protein D (CcmD) DA391_06900 PF03100 CcmE DA391_06905 PF01578 Cytochrome C assembly protein DA391_06905 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal DA391_06910 PF08534 Redoxin DA391_06915 PF03918 Cytochrome C biogenesis protein DA391_06920 PF03918 Cytochrome C biogenesis protein DA391_06925 PF04333 MlaA lipoprotein DA391_06940 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) DA391_06945 PF04175 Protein of unknown function (DUF406) DA391_06950 PF00108 Thiolase, N-terminal domain DA391_06950 PF02803 Thiolase, C-terminal domain DA391_06955 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain DA391_06955 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain DA391_06955 PF00378 Enoyl-CoA hydratase/isomerase DA391_06965 PF00300 Histidine phosphatase superfamily (branch 1) DA391_06975 PF01713 Smr domain DA391_06985 PF05175 Methyltransferase small domain DA391_06990 PF01264 Chorismate synthase DA391_06995 PF03411 Penicillin-insensitive murein endopeptidase DA391_07000 PF01925 Sulfite exporter TauE/SafE DA391_07005 PF04315 Elongation factor P hydroxylase DA391_07010 PF08891 YfcL protein DA391_07015 PF05430 S-adenosyl-L-methionine-dependent methyltransferase DA391_07015 PF01266 FAD dependent oxidoreductase DA391_07020 PF02801 Beta-ketoacyl synthase, C-terminal domain DA391_07020 PF00109 Beta-ketoacyl synthase, N-terminal domain DA391_07025 PF00072 Response regulator receiver domain DA391_07025 PF00990 Diguanylate cyclase, GGDEF domain DA391_07030 PF01177 Asp/Glu/Hydantoin racemase DA391_07035 PF00328 Histidine phosphatase superfamily (branch 2) DA391_07040 PF03600 Citrate transporter DA391_07055 PF02683 Cytochrome C biogenesis protein transmembrane region DA391_07055 PF11412 Disulphide bond corrector protein DsbC DA391_07065 PF00578 AhpC/TSA family DA391_07070 PF00042 Globin DA391_07070 PF00175 Oxidoreductase NAD-binding domain DA391_07070 PF00970 Oxidoreductase FAD-binding domain DA391_07085 PF11890 Domain of unknown function (DUF3410) DA391_07085 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain DA391_07085 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain DA391_07090 PF01118 Semialdehyde dehydrogenase, NAD binding domain DA391_07090 PF02774 Semialdehyde dehydrogenase, dimerisation domain DA391_07095 PF01416 tRNA pseudouridine synthase DA391_07100 PF09335 SNARE associated Golgi protein DA391_07105 PF01039 Carboxyl transferase domain DA391_07105 PF17848 Acetyl-coA carboxylase zinc finger domain DA391_07110 PF08245 Mur ligase middle domain DA391_07110 PF02875 Mur ligase family, glutamate ligase domain DA391_07115 PF05036 Sporulation related domain DA391_07120 PF02674 Colicin V production protein DA391_07125 PF00156 Phosphoribosyl transferase domain DA391_07130 PF02441 Flavoprotein DA391_07140 PF00497 Bacterial extracellular solute-binding proteins, family 3 DA391_07145 PF00528 Binding-protein-dependent transport system inner membrane component DA391_07150 PF00528 Binding-protein-dependent transport system inner membrane component DA391_07155 PF00005 ABC transporter DA391_07160 PF01370 NAD dependent epimerase/dehydratase family DA391_07160 PF08338 Domain of unknown function (DUF1731) DA391_07170 PF12850 Calcineurin-like phosphoesterase superfamily domain DA391_07175 PF00293 NUDIX domain DA391_07185 PF10282 Lactonase, 7-bladed beta-propeller DA391_07190 PF00202 Aminotransferase class-III DA391_07195 PF04055 Radical SAM superfamily DA391_07195 PF06968 Biotin and Thiamin Synthesis associated domain DA391_07200 PF00155 Aminotransferase class I and II DA391_07205 PF08241 Methyltransferase domain DA391_07215 PF00005 ABC transporter DA391_07220 PF00271 Helicase conserved C-terminal domain DA391_07220 PF02151 UvrB/uvrC motif DA391_07220 PF04851 Type III restriction enzyme, res subunit DA391_07220 PF12344 Ultra-violet resistance protein B DA391_07220 PF17757 UvrB interaction domain DA391_07225 PF09905 DNA-binding protein VF530 DA391_07230 PF01933 Uncharacterised protein family UPF0052 DA391_07235 PF04055 Radical SAM superfamily DA391_07235 PF06463 Molybdenum Cofactor Synthesis C DA391_07240 PF01967 MoaC family DA391_07245 PF02597 ThiS family DA391_07250 PF02391 MoaE protein DA391_07255 PF01027 Inhibitor of apoptosis-promoting Bax1 DA391_07260 PF07715 TonB-dependent Receptor Plug Domain DA391_07260 PF00593 TonB dependent receptor DA391_07265 PF00756 Putative esterase DA391_07265 PF11806 Domain of unknown function (DUF3327) DA391_07270 PF03621 MbtH-like protein DA391_07275 PF13193 AMP-binding enzyme C-terminal domain DA391_07275 PF00550 Phosphopantetheine attachment site DA391_07275 PF00501 AMP-binding enzyme DA391_07275 PF00975 Thioesterase domain DA391_07275 PF00668 Condensation domain DA391_07280 PF05977 Transmembrane secretion effector DA391_07285 PF01497 Periplasmic binding protein DA391_07290 PF00425 chorismate binding enzyme DA391_07295 PF13193 AMP-binding enzyme C-terminal domain DA391_07295 PF00501 AMP-binding enzyme DA391_07300 PF00857 Isochorismatase family DA391_07300 PF00550 Phosphopantetheine attachment site DA391_07320 PF00005 ABC transporter DA391_07325 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion DA391_07330 PF09209 Tetracyclin repressor-like, C-terminal domain DA391_07330 PF00440 Bacterial regulatory proteins, tetR family DA391_07335 PF00271 Helicase conserved C-terminal domain DA391_07335 PF00270 DEAD/DEAH box helicase DA391_07340 PF01207 Dihydrouridine synthase (Dus) DA391_07350 PF00768 D-alanyl-D-alanine carboxypeptidase DA391_07355 PF09330 D-lactate dehydrogenase, membrane binding DA391_07355 PF01565 FAD binding domain DA391_07360 PF01928 CYTH domain DA391_07365 PF01844 HNH endonuclease DA391_07375 PF04226 Transglycosylase associated protein DA391_07380 PF00005 ABC transporter DA391_07390 PF00528 Binding-protein-dependent transport system inner membrane component DA391_07395 PF00528 Binding-protein-dependent transport system inner membrane component DA391_07400 PF07308 Protein of unknown function (DUF1456) DA391_07410 PF02653 Branched-chain amino acid transport system / permease component DA391_07415 PF02653 Branched-chain amino acid transport system / permease component DA391_07420 PF00005 ABC transporter DA391_07425 PF00005 ABC transporter DA391_07430 PF00581 Rhodanese-like domain DA391_07445 PF04069 Substrate binding domain of ABC-type glycine betaine transport system DA391_07450 PF00528 Binding-protein-dependent transport system inner membrane component DA391_07455 PF00005 ABC transporter DA391_07460 PF00528 Binding-protein-dependent transport system inner membrane component DA391_07470 PF13520 Amino acid permease DA391_07475 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain DA391_07475 PF01276 Orn/Lys/Arg decarboxylase, major domain DA391_07475 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain DA391_07485 PF00892 EamA-like transporter family DA391_07495 PF00267 Gram-negative porin DA391_07500 PF13307 Helicase C-terminal domain DA391_07500 PF06733 DEAD_2 DA391_07505 PF00230 Major intrinsic protein DA391_07510 PF02885 Glycosyl transferase family, helical bundle domain DA391_07520 PF07338 Protein of unknown function (DUF1471) DA391_07525 PF01613 Flavin reductase like domain DA391_07530 PF05971 RNA methyltransferase DA391_07535 PF08447 PAS fold DA391_07535 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DA391_07535 PF13426 PAS domain DA391_07540 PF00005 ABC transporter DA391_07545 PF00528 Binding-protein-dependent transport system inner membrane component DA391_07550 PF00497 Bacterial extracellular solute-binding proteins, family 3 DA391_07555 PF01258 Prokaryotic dksA/traR C4-type zinc finger DA391_07560 PF00210 Ferritin-like domain DA391_07565 PF13847 Methyltransferase domain DA391_07580 PF02469 Fasciclin domain DA391_07590 PF00892 EamA-like transporter family DA391_07600 PF13505 Outer membrane protein beta-barrel domain DA391_07620 PF00005 ABC transporter DA391_07620 PF12848 ABC transporter DA391_07625 PF00899 ThiF family DA391_07630 PF03454 MoeA C-terminal region (domain IV) DA391_07630 PF03453 MoeA N-terminal region (domain I and II) DA391_07630 PF00994 Probable molybdopterin binding domain DA391_07640 PF00083 Sugar (and other) transporter DA391_07645 PF00756 Putative esterase DA391_07650 PF08240 Alcohol dehydrogenase GroES-like domain DA391_07650 PF00107 Zinc-binding dehydrogenase DA391_07655 PF03466 LysR substrate binding domain DA391_07655 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DA391_07660 PF06779 Uncharacterised MFS-type transporter YbfB DA391_07665 PF01227 GTP cyclohydrolase I DA391_07670 PF04235 Protein of unknown function (DUF418) DA391_07675 PF00356 Bacterial regulatory proteins, lacI family DA391_07680 PF13407 Periplasmic binding protein domain DA391_07685 PF00005 ABC transporter DA391_07690 PF02653 Branched-chain amino acid transport system / permease component DA391_07695 PF01226 Formate/nitrite transporter DA391_07700 PF00158 Sigma-54 interaction domain DA391_07700 PF01590 GAF domain DA391_07705 PF04879 Molybdopterin oxidoreductase Fe4S4 domain DA391_07705 PF00384 Molybdopterin oxidoreductase DA391_07705 PF01568 Molydopterin dinucleotide binding domain DA391_07710 PF13247 4Fe-4S dicluster domain DA391_07710 PF12800 4Fe-4S binding domain DA391_07715 PF01750 Hydrogenase maturation protease DA391_07720 PF07450 Formate hydrogenlyase maturation protein HycH DA391_07725 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit DA391_07730 PF12838 4Fe-4S dicluster domain DA391_07735 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit DA391_07735 PF00374 Nickel-dependent hydrogenase DA391_07735 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit DA391_07740 PF00361 Proton-conducting membrane transporter DA391_07740 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus DA391_07745 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L DA391_07750 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus DA391_07750 PF00361 Proton-conducting membrane transporter DA391_07755 PF00146 NADH dehydrogenase DA391_07760 PF00361 Proton-conducting membrane transporter DA391_07765 PF00037 4Fe-4S binding domain DA391_07765 PF12798 4Fe-4S binding domain DA391_07770 PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA DA391_07775 PF01455 HupF/HypC family DA391_07785 PF02698 DUF218 domain DA391_07790 PF00390 Malic enzyme, N-terminal domain DA391_07790 PF03949 Malic enzyme, NAD binding domain DA391_07795 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region DA391_07795 PF08211 Cytidine and deoxycytidylate deaminase zinc-binding region DA391_07800 PF04172 LrgB-like family DA391_07805 PF03788 LrgA family DA391_07810 PF07690 Major Facilitator Superfamily DA391_07825 PF09334 tRNA synthetases class I (M) DA391_07825 PF01588 Putative tRNA binding domain DA391_07830 PF10609 NUBPL iron-transfer P-loop NTPase DA391_07835 PF00485 Phosphoribulokinase / Uridine kinase family DA391_07840 PF00692 dUTPase DA391_07845 PF05170 AsmA family DA391_07850 PF03606 C4-dicarboxylate anaerobic carrier DA391_07855 PF00571 CBS domain DA391_07855 PF03471 Transporter associated domain DA391_07855 PF03741 Integral membrane protein TerC family DA391_07860 PF00483 Nucleotidyl transferase DA391_07860 PF01050 Mannose-6-phosphate isomerase DA391_07865 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain DA391_07865 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III DA391_07865 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II DA391_07865 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I DA391_07875 PF14524 Wzt C-terminal domain DA391_07875 PF00005 ABC transporter DA391_07880 PF08241 Methyltransferase domain DA391_07890 PF16363 GDP-mannose 4,6 dehydratase DA391_07895 PF16363 GDP-mannose 4,6 dehydratase DA391_07905 PF13439 Glycosyltransferase Family 4 DA391_07905 PF00534 Glycosyl transferases group 1 DA391_07910 PF00483 Nucleotidyl transferase DA391_07915 PF00483 Nucleotidyl transferase DA391_07920 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain DA391_07920 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase DA391_07925 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase DA391_07925 PF01502 Phosphoribosyl-AMP cyclohydrolase DA391_07930 PF00977 Histidine biosynthesis protein DA391_07935 PF00977 Histidine biosynthesis protein DA391_07940 PF00117 Glutamine amidotransferase class-I DA391_07945 PF00475 Imidazoleglycerol-phosphate dehydratase DA391_07950 PF00155 Aminotransferase class I and II DA391_07955 PF00815 Histidinol dehydrogenase DA391_07960 PF08029 HisG, C-terminal domain DA391_07960 PF01634 ATP phosphoribosyltransferase DA391_07970 PF01370 NAD dependent epimerase/dehydratase family DA391_07975 PF02653 Branched-chain amino acid transport system / permease component DA391_07980 PF00005 ABC transporter DA391_07985 PF00465 Iron-containing alcohol dehydrogenase DA391_07995 PF13520 Amino acid permease DA391_08000 PF08411 Exonuclease C-terminal DA391_08000 PF00929 Exonuclease DA391_08010 PF04632 Fusaric acid resistance protein family DA391_08015 PF04363 Protein of unknown function (DUF496) DA391_08020 PF02653 Branched-chain amino acid transport system / permease component DA391_08025 PF02653 Branched-chain amino acid transport system / permease component DA391_08030 PF00005 ABC transporter DA391_08035 PF13407 Periplasmic binding protein domain DA391_08040 PF00288 GHMP kinases N terminal domain DA391_08045 PF00155 Aminotransferase class I and II DA391_08050 PF10414 Sirohaem synthase dimerisation region DA391_08050 PF14824 Sirohaem biosynthesis protein central DA391_08050 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases DA391_08055 PF00871 Acetokinase family DA391_08060 PF10662 Ethanolamine utilisation - propanediol utilisation DA391_08065 PF00936 BMC domain DA391_08075 PF10531 SLBB domain DA391_08075 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit DA391_08075 PF13375 RnfC Barrel sandwich hybrid domain DA391_08075 PF13237 4Fe-4S dicluster domain DA391_08080 PF00465 Iron-containing alcohol dehydrogenase DA391_08085 PF00171 Aldehyde dehydrogenase family DA391_08090 PF01923 Cobalamin adenosyltransferase DA391_08095 PF03319 Ethanolamine utilisation protein EutN/carboxysome DA391_08105 PF06130 Phosphate propanoyltransferase DA391_08115 PF00936 BMC domain DA391_08125 PF08841 Diol dehydratase reactivase ATPase-like domain DA391_08125 PF18427 DD-reactivating factor swiveling domain DA391_08130 PF02287 Dehydratase small subunit DA391_08135 PF02288 Dehydratase medium subunit DA391_08140 PF02286 Dehydratase large subunit DA391_08145 PF00936 BMC domain DA391_08150 PF00936 BMC domain DA391_08155 PF00230 Major intrinsic protein DA391_08160 PF10114 Sensory domain found in PocR DA391_08160 PF12833 Helix-turn-helix domain DA391_08165 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain DA391_08165 PF07685 CobB/CobQ-like glutamine amidotransferase domain DA391_08170 PF03186 CobD/Cbib protein DA391_08175 PF02570 Precorrin-8X methylmutase DA391_08180 PF01888 CbiD DA391_08185 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases DA391_08190 PF05175 Methyltransferase small domain DA391_08195 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases DA391_08200 PF11760 Cobalamin synthesis G N-terminal DA391_08200 PF01890 Cobalamin synthesis G C-terminus DA391_08200 PF11761 Cobalamin biosynthesis central region DA391_08205 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases DA391_08210 PF02571 Precorrin-6x reductase CbiJ/CobK DA391_08215 PF06180 Cobalt chelatase (CbiK) DA391_08220 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases DA391_08225 PF01891 Cobalt uptake substrate-specific transmembrane region DA391_08230 PF02553 Cobalt transport protein component CbiN DA391_08235 PF02361 Cobalt transport protein DA391_08240 PF00005 ABC transporter DA391_08245 PF07685 CobB/CobQ-like glutamine amidotransferase domain DA391_08250 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase DA391_08255 PF02654 Cobalamin-5-phosphate synthase DA391_08260 PF00300 Histidine phosphatase superfamily (branch 1) DA391_08265 PF02277 Phosphoribosyltransferase DA391_08270 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DA391_08270 PF03466 LysR substrate binding domain DA391_08280 PF01048 Phosphorylase superfamily DA391_08285 PF03825 Nucleoside H+ symporter DA391_08290 PF00764 Arginosuccinate synthase DA391_08295 PF01554 MatE DA391_08300 PF00072 Response regulator receiver domain DA391_08300 PF01584 CheW-like domain DA391_08305 PF00106 short chain dehydrogenase DA391_08310 PF07804 HipA-like C-terminal domain DA391_08315 PF13657 HipA N-terminal domain DA391_08325 PF00440 Bacterial regulatory proteins, tetR family DA391_08335 PF00873 AcrB/AcrD/AcrF family DA391_08355 PF00849 RNA pseudouridylate synthase DA391_08355 PF01479 S4 domain DA391_08360 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain DA391_08360 PF02753 Pili assembly chaperone PapD, C-terminal domain DA391_08370 PF00577 Outer membrane usher protein DA391_08370 PF13953 PapC C-terminal domain DA391_08370 PF13954 PapC N-terminal domain DA391_08375 PF02753 Pili assembly chaperone PapD, C-terminal domain DA391_08375 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain DA391_08385 PF00072 Response regulator receiver domain DA391_08385 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DA391_08385 PF00512 His Kinase A (phospho-acceptor) domain DA391_08385 PF00989 PAS fold DA391_08385 PF00497 Bacterial extracellular solute-binding proteins, family 3 DA391_08385 PF01627 Hpt domain DA391_08390 PF00196 Bacterial regulatory proteins, luxR family DA391_08390 PF00072 Response regulator receiver domain DA391_08400 PF08402 TOBE domain DA391_08400 PF00005 ABC transporter DA391_08405 PF00528 Binding-protein-dependent transport system inner membrane component DA391_08415 PF07690 Major Facilitator Superfamily DA391_08420 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DA391_08420 PF05231 MASE1 DA391_08420 PF07730 Histidine kinase DA391_08425 PF00196 Bacterial regulatory proteins, luxR family DA391_08425 PF00072 Response regulator receiver domain DA391_08430 PF12431 Transcriptional regulator DA391_08430 PF00072 Response regulator receiver domain DA391_08435 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DA391_08435 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain DA391_08435 PF17203 Single cache domain 3 DA391_08435 PF00989 PAS fold DA391_08440 PF08218 Citrate lyase ligase C-terminal domain DA391_08445 PF06857 Malonate decarboxylase delta subunit (MdcD) DA391_08450 PF03328 HpcH/HpaI aldolase/citrate lyase family DA391_08455 PF04223 Citrate lyase, alpha subunit (CitF) DA391_08460 PF03802 Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase DA391_08470 PF00939 Sodium:sulfate symporter transmembrane region DA391_08475 PF17837 4'-phosphopantetheinyl transferase N-terminal domain DA391_08475 PF01648 4'-phosphopantetheinyl transferase superfamily DA391_08485 PF07687 Peptidase dimerisation domain DA391_08485 PF01546 Peptidase family M20/M25/M40 DA391_08490 PF07670 Nucleoside recognition DA391_08495 PF07670 Nucleoside recognition DA391_08505 PF00939 Sodium:sulfate symporter transmembrane region DA391_08510 PF03737 Aldolase/RraA DA391_08515 PF02585 GlcNAc-PI de-N-acetylase DA391_08520 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DA391_08520 PF03466 LysR substrate binding domain DA391_08530 PF09831 Uncharacterized protein conserved in bacteria (DUF2058) DA391_08535 PF00849 RNA pseudouridylate synthase DA391_08565 PF00132 Bacterial transferase hexapeptide (six repeats) DA391_08570 PF00158 Sigma-54 interaction domain DA391_08570 PF01590 GAF domain DA391_08575 PF00753 Metallo-beta-lactamase superfamily DA391_08575 PF00301 Rubredoxin DA391_08575 PF00258 Flavodoxin DA391_08580 PF18113 Rubredoxin binding C-terminal domain DA391_08580 PF07992 Pyridine nucleotide-disulphide oxidoreductase DA391_08585 PF09313 Domain of unknown function (DUF1971) DA391_08595 PF01037 Lrp/AsnC ligand binding domain DA391_08610 PF03466 LysR substrate binding domain DA391_08610 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DA391_08645 PF06167 Glucose-regulated metallo-peptidase M90 DA391_08650 PF00328 Histidine phosphatase superfamily (branch 2) DA391_08655 PF14001 YdfZ protein DA391_08665 PF01037 Lrp/AsnC ligand binding domain DA391_08670 PF10777 Inner membrane protein YlaC DA391_08675 PF00698 Acyl transferase domain DA391_08675 PF08240 Alcohol dehydrogenase GroES-like domain DA391_08675 PF02801 Beta-ketoacyl synthase, C-terminal domain DA391_08675 PF00107 Zinc-binding dehydrogenase DA391_08675 PF16197 Ketoacyl-synthetase C-terminal extension DA391_08675 PF08659 KR domain DA391_08675 PF00550 Phosphopantetheine attachment site DA391_08675 PF14765 Polyketide synthase dehydratase DA391_08675 PF00109 Beta-ketoacyl synthase, N-terminal domain DA391_08680 PF02837 Glycosyl hydrolases family 2, sugar binding domain DA391_08680 PF02836 Glycosyl hydrolases family 2, TIM barrel domain DA391_08680 PF00703 Glycosyl hydrolases family 2 DA391_08680 PF16353 Domain of unknown function(DUF4981) DA391_08680 PF02929 Beta galactosidase small chain DA391_08685 PF00356 Bacterial regulatory proteins, lacI family DA391_08690 PF00313 'Cold-shock' DNA-binding domain DA391_08695 PF10781 Dextransucrase DSRB DA391_08700 PF02203 Tar ligand binding domain homologue DA391_08700 PF00672 HAMP domain DA391_08700 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DA391_08705 PF02308 MgtC family DA391_08710 PF00689 Cation transporting ATPase, C-terminus DA391_08710 PF00690 Cation transporter/ATPase, N-terminus DA391_08715 PF16884 N-terminal domain of oxidoreductase DA391_08715 PF00107 Zinc-binding dehydrogenase DA391_08720 PF00582 Universal stress protein family DA391_08725 PF05247 Flagellar transcriptional activator (FlhD) DA391_08730 PF05280 Flagellar transcriptional activator (FlhC) DA391_08735 PF01618 MotA/TolQ/ExbB proton channel family DA391_08740 PF13677 Membrane MotB of proton-channel complex MotA/MotB DA391_08740 PF00691 OmpA family DA391_08745 PF01584 CheW-like domain DA391_08745 PF02895 Signal transducing histidine kinase, homodimeric domain DA391_08745 PF01627 Hpt domain DA391_08745 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DA391_08745 PF09078 CheY binding DA391_08750 PF01584 CheW-like domain DA391_08760 PF00672 HAMP domain DA391_08760 PF02203 Tar ligand binding domain homologue DA391_08760 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DA391_08765 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DA391_08765 PF00672 HAMP domain DA391_08765 PF02203 Tar ligand binding domain homologue DA391_08770 PF03705 CheR methyltransferase, all-alpha domain DA391_08770 PF01739 CheR methyltransferase, SAM binding domain DA391_08775 PF00072 Response regulator receiver domain DA391_08775 PF01339 CheB methylesterase DA391_08780 PF00072 Response regulator receiver domain DA391_08785 PF04344 Chemotaxis phosphatase, CheZ DA391_08790 PF01312 FlhB HrpN YscU SpaS Family DA391_08795 PF00771 FHIPEP family DA391_08800 PF06366 Flagellar protein FlhE DA391_08805 PF05130 FlgN protein DA391_08810 PF04316 Anti-sigma-28 factor, FlgM DA391_08815 PF13144 Chaperone for flagella basal body P-ring formation DA391_08815 PF17656 FlgA N-terminal domain DA391_08820 PF00460 Flagella basal body rod protein DA391_08825 PF00460 Flagella basal body rod protein DA391_08825 PF06429 Flagellar basal body rod FlgEFG protein C-terminal DA391_08830 PF03963 Flagellar hook capping protein - N-terminal region DA391_08830 PF13860 FlgD Ig-like domain DA391_08830 PF13861 FlgD Tudor-like domain DA391_08835 PF06429 Flagellar basal body rod FlgEFG protein C-terminal DA391_08835 PF00460 Flagella basal body rod protein DA391_08835 PF07559 Flagellar basal body protein FlaE DA391_08840 PF06429 Flagellar basal body rod FlgEFG protein C-terminal DA391_08840 PF00460 Flagella basal body rod protein DA391_08845 PF06429 Flagellar basal body rod FlgEFG protein C-terminal DA391_08845 PF00460 Flagella basal body rod protein DA391_08850 PF02107 Flagellar L-ring protein DA391_08855 PF02119 Flagellar P-ring protein DA391_08860 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase DA391_08860 PF10135 Rod binding protein DA391_08865 PF00460 Flagella basal body rod protein DA391_08865 PF06429 Flagellar basal body rod FlgEFG protein C-terminal DA391_08870 PF00669 Bacterial flagellin N-terminal helical region DA391_08875 PF01311 Bacterial export proteins, family 1 DA391_08880 PF01313 Bacterial export proteins, family 3 DA391_08885 PF00813 FliP family DA391_08890 PF04347 Flagellar biosynthesis protein, FliO DA391_08895 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term DA391_08895 PF16973 Flagellar motor switch protein FliN N-terminal DA391_08900 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term DA391_08900 PF02154 Flagellar motor switch protein FliM DA391_08905 PF03748 Flagellar basal body-associated protein FliL DA391_08910 PF02120 Flagellar hook-length control protein FliK DA391_08915 PF02050 Flagellar FliJ protein DA391_08920 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain DA391_08920 PF18269 T3SS EscN ATPase C-terminal domain DA391_08925 PF02108 Flagellar assembly protein FliH DA391_08930 PF14841 FliG middle domain DA391_08930 PF14842 FliG N-terminal domain DA391_08930 PF01706 FliG C-terminal domain DA391_08935 PF08345 Flagellar M-ring protein C-terminal DA391_08935 PF01514 Secretory protein of YscJ/FliF family DA391_08940 PF02049 Flagellar hook-basal body complex protein FliE DA391_08945 PF12167 Arm DNA-binding domain DA391_08945 PF00589 Phage integrase family DA391_09005 PF00436 Single-strand binding protein family DA391_09080 PF03796 DnaB-like helicase C terminal domain DA391_09080 PF00772 DnaB-like helicase N terminal domain DA391_09150 PF00959 Phage lysozyme DA391_09330 PF00730 HhH-GPD superfamily base excision DNA repair protein DA391_09335 PF01966 HD domain DA391_09340 PF12833 Helix-turn-helix domain DA391_09345 PF05400 Flagellar protein FliT DA391_09350 PF02561 Flagellar protein FliS DA391_09355 PF02465 Flagellar hook-associated protein 2 N-terminus DA391_09355 PF07195 Flagellar hook-associated protein 2 C-terminus DA391_09355 PF07196 Flagellin hook IN motif DA391_09360 PF00700 Bacterial flagellin C-terminal helical region DA391_09360 PF00669 Bacterial flagellin N-terminal helical region DA391_09370 PF04539 Sigma-70 region 3 DA391_09370 PF04545 Sigma-70, region 4 DA391_09370 PF04542 Sigma-70 region 2 DA391_09375 PF02899 Phage integrase, N-terminal SAM-like domain DA391_09380 PF00291 Pyridoxal-phosphate dependent enzyme DA391_09415 PF14850 DNA-binding domain of Proline dehydrogenase DA391_09415 PF18327 Proline utilization A proline dehydrogenase N-terminal domain DA391_09415 PF00171 Aldehyde dehydrogenase family DA391_09415 PF01619 Proline dehydrogenase DA391_09420 PF00474 Sodium:solute symporter family DA391_09425 PF03239 Iron permease FTR1 family DA391_09430 PF09375 Imelysin DA391_09430 PF13473 Cupredoxin-like domain DA391_09435 PF04261 Dyp-type peroxidase family DA391_09440 PF03358 NADPH-dependent FMN reductase DA391_09450 PF01344 Kelch motif DA391_09455 PF00860 Permease family DA391_09460 PF01613 Flavin reductase like domain DA391_09465 PF00881 Nitroreductase family DA391_09470 PF12697 Alpha/beta hydrolase family DA391_09475 PF01042 Endoribonuclease L-PSP DA391_09480 PF00857 Isochorismatase family DA391_09485 PF00296 Luciferase-like monooxygenase DA391_09495 PF00440 Bacterial regulatory proteins, tetR family DA391_09495 PF08362 YcdC-like protein, C-terminal region DA391_09500 PF00324 Amino acid permease DA391_09530 PF00128 Alpha amylase, catalytic domain DA391_09530 PF02806 Alpha amylase, C-terminal all-beta domain DA391_09540 PF06942 GlpM protein DA391_09545 PF10769 Protein of unknown function (DUF2594) DA391_09550 PF00072 Response regulator receiver domain DA391_09550 PF00196 Bacterial regulatory proteins, luxR family DA391_09555 PF01541 GIY-YIG catalytic domain DA391_09555 PF08459 UvrC Helix-hairpin-helix N-terminal DA391_09555 PF02151 UvrB/uvrC motif DA391_09560 PF01066 CDP-alcohol phosphatidyltransferase DA391_09600 PF01381 Helix-turn-helix DA391_09600 PF00717 Peptidase S24-like DA391_09620 PF03354 Phage Terminase DA391_09625 PF05869 DNA N-6-adenine-methyltransferase (Dam) DA391_09630 PF03374 Phage antirepressor protein KilAC domain DA391_09630 PF09669 Phage regulatory protein Rha (Phage_pRha) DA391_09635 PF06147 Protein of unknown function (DUF968) DA391_09650 PF00182 Chitinase class I DA391_09685 PF03354 Phage Terminase DA391_09695 PF04860 Phage portal protein DA391_09795 PF13018 Extended Signal Peptide of Type V secretion system DA391_09795 PF03212 Pertactin DA391_09795 PF16168 Adhesin of bacterial autotransporter system, probable stalk DA391_09795 PF03797 Autotransporter beta-domain DA391_09825 PF03606 C4-dicarboxylate anaerobic carrier DA391_09830 PF01380 SIS domain DA391_09830 PF01418 Helix-turn-helix domain, rpiR family DA391_09835 PF10397 Adenylosuccinate lyase C-terminus DA391_09835 PF00206 Lyase DA391_09865 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DA391_09865 PF08447 PAS fold DA391_09875 PF01053 Cys/Met metabolism PLP-dependent enzyme DA391_09880 PF05368 NmrA-like family DA391_09885 PF01638 HxlR-like helix-turn-helix DA391_09895 PF01232 Mannitol dehydrogenase Rossmann domain DA391_09895 PF08125 Mannitol dehydrogenase C-terminal domain DA391_09900 PF08240 Alcohol dehydrogenase GroES-like domain DA391_09900 PF00107 Zinc-binding dehydrogenase DA391_09905 PF00392 Bacterial regulatory proteins, gntR family DA391_09905 PF07729 FCD domain DA391_09910 PF07690 Major Facilitator Superfamily DA391_09915 PF00892 EamA-like transporter family DA391_09930 PF06411 HdeA/HdeB family DA391_09940 PF00990 Diguanylate cyclase, GGDEF domain DA391_09940 PF00563 EAL domain DA391_09940 PF01590 GAF domain DA391_09940 PF00360 Phytochrome region DA391_09950 PF00005 ABC transporter DA391_09950 PF00664 ABC transporter transmembrane region DA391_09955 PF13520 Amino acid permease DA391_09965 PF12833 Helix-turn-helix domain DA391_09970 PF10964 Protein of unknown function (DUF2766) DA391_09975 PF13996 YobH-like protein DA391_09980 PF13998 MgrB protein DA391_09985 PF13974 YebO-like protein DA391_10000 PF00324 Amino acid permease DA391_10005 PF07017 Antimicrobial peptide resistance and lipid A acylation protein PagP DA391_10010 PF10736 Protein of unknown function (DUF2627) DA391_10015 PF00313 'Cold-shock' DNA-binding domain DA391_10025 PF03717 Penicillin-binding Protein dimerisation domain DA391_10025 PF00905 Penicillin binding protein transpeptidase domain DA391_10040 PF05231 MASE1 DA391_10040 PF00563 EAL domain DA391_10040 PF08447 PAS fold DA391_10040 PF08448 PAS fold DA391_10040 PF13426 PAS domain DA391_10040 PF00990 Diguanylate cyclase, GGDEF domain DA391_10050 PF07715 TonB-dependent Receptor Plug Domain DA391_10050 PF00593 TonB dependent receptor DA391_10055 PF02659 Putative manganese efflux pump DA391_10060 PF06173 Protein of unknown function (DUF986) DA391_10065 PF03613 PTS system mannose/fructose/sorbose family IID component DA391_10070 PF03609 PTS system sorbose-specific iic component DA391_10075 PF03610 PTS system fructose IIA component DA391_10075 PF03830 PTS system sorbose subfamily IIB component DA391_10080 PF03471 Transporter associated domain DA391_10080 PF03741 Integral membrane protein TerC family DA391_10085 PF02048 Heat-stable enterotoxin ST DA391_10090 PF03315 Serine dehydratase beta chain DA391_10090 PF03313 Serine dehydratase alpha chain DA391_10095 PF00293 NUDIX domain DA391_10100 PF04715 Anthranilate synthase component I, N terminal region DA391_10100 PF00425 chorismate binding enzyme DA391_10105 PF03701 Uncharacterised protein family (UPF0181) DA391_10110 PF02222 ATP-grasp domain DA391_10115 PF00271 Helicase conserved C-terminal domain DA391_10115 PF03880 DbpA RNA binding domain DA391_10115 PF00270 DEAD/DEAH box helicase DA391_10120 PF07130 YebG protein DA391_10130 PF13995 YebF-like protein DA391_10135 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain DA391_10135 PF00326 Prolyl oligopeptidase family DA391_10140 PF00929 Exonuclease DA391_10145 PF00561 alpha/beta hydrolase fold DA391_10150 PF06440 DNA polymerase III, theta subunit DA391_10155 PF00210 Ferritin-like domain DA391_10160 PF04234 CopC domain DA391_10165 PF05425 Copper resistance protein D DA391_10170 PF10709 Protein of unknown function (DUF2511) DA391_10180 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily DA391_10190 PF03797 Autotransporter beta-domain DA391_10200 PF00132 Bacterial transferase hexapeptide (six repeats) DA391_10215 PF02798 Glutathione S-transferase, N-terminal domain DA391_10215 PF14834 Glutathione S-transferase, C-terminal domain DA391_10235 PF07351 Protein of unknown function (DUF1480) DA391_10240 PF00360 Phytochrome region DA391_10240 PF00990 Diguanylate cyclase, GGDEF domain DA391_10240 PF00563 EAL domain DA391_10240 PF01590 GAF domain DA391_10280 PF03466 LysR substrate binding domain DA391_10280 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DA391_10285 PF02470 MlaD protein DA391_10290 PF04403 Paraquat-inducible protein A DA391_10295 PF13185 GAF domain DA391_10300 PF17516 ProQ C-terminal domain DA391_10300 PF04352 ProQ/FINO family DA391_10305 PF11818 C-terminal domain of tail specific protease (DUF3340) DA391_10305 PF03572 Peptidase family S41 DA391_10305 PF00595 PDZ domain DA391_10305 PF17804 Tail specific protease N-terminal domain DA391_10310 PF01435 Peptidase family M48 DA391_10315 PF07690 Major Facilitator Superfamily DA391_10320 PF14583 Oligogalacturonate lyase DA391_10325 PF01614 Bacterial transcriptional regulator DA391_10325 PF09339 IclR helix-turn-helix domain DA391_10330 PF01510 N-acetylmuramoyl-L-alanine amidase DA391_10340 PF04307 LexA-binding, inner membrane-associated putative hydrolase DA391_10345 PF06178 Oligogalacturonate-specific porin protein (KdgM) DA391_10355 PF00005 ABC transporter DA391_10355 PF03459 TOBE domain DA391_10355 PF17912 MalK OB fold domain DA391_10360 PF00528 Binding-protein-dependent transport system inner membrane component DA391_10365 PF00528 Binding-protein-dependent transport system inner membrane component DA391_10370 PF06917 Periplasmic pectate lyase DA391_10380 PF07883 Cupin domain DA391_10385 PF13419 Haloacid dehalogenase-like hydrolase DA391_10390 PF14002 YniB-like protein DA391_10400 PF00950 ABC 3 transport family DA391_10405 PF00950 ABC 3 transport family DA391_10410 PF00005 ABC transporter DA391_10415 PF01297 Zinc-uptake complex component A periplasmic DA391_10420 PF01464 Transglycosylase SLT domain DA391_10425 PF01914 MarC family integral membrane protein DA391_10440 PF01261 Xylose isomerase-like TIM barrel DA391_10445 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family DA391_10450 PF02782 FGGY family of carbohydrate kinases, C-terminal domain DA391_10450 PF00370 FGGY family of carbohydrate kinases, N-terminal domain DA391_10455 PF02615 Malate/L-lactate dehydrogenase DA391_10470 PF02653 Branched-chain amino acid transport system / permease component DA391_10475 PF00005 ABC transporter DA391_10480 PF09339 IclR helix-turn-helix domain DA391_10480 PF01614 Bacterial transcriptional regulator DA391_10485 PF04474 Protein of unknown function (DUF554) DA391_10490 PF13619 KTSC domain DA391_10495 PF00805 Pentapeptide repeats (8 copies) DA391_10500 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain DA391_10500 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) DA391_10500 PF03129 Anticodon binding domain DA391_10500 PF02824 TGS domain DA391_10505 PF05198 Translation initiation factor IF-3, N-terminal domain DA391_10505 PF00707 Translation initiation factor IF-3, C-terminal domain DA391_10510 PF01632 Ribosomal protein L35 DA391_10515 PF00453 Ribosomal protein L20 DA391_10520 PF01409 tRNA synthetases class II core domain (F) DA391_10520 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain DA391_10525 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain DA391_10525 PF03147 Ferredoxin-fold anticodon binding domain DA391_10525 PF03484 tRNA synthetase B5 domain DA391_10525 PF01588 Putative tRNA binding domain DA391_10525 PF03483 B3/4 domain DA391_10530 PF00216 Bacterial DNA-binding protein DA391_10535 PF04293 SpoVR like protein DA391_10540 PF01266 FAD dependent oxidoreductase DA391_10545 PF00842 Alanine racemase, C-terminal domain DA391_10545 PF01168 Alanine racemase, N-terminal domain DA391_10550 PF00512 His Kinase A (phospho-acceptor) domain DA391_10550 PF08521 Two-component sensor kinase N-terminal DA391_10550 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DA391_10555 PF00072 Response regulator receiver domain DA391_10555 PF00486 Transcriptional regulatory protein, C terminal DA391_10560 PF04076 Bacterial OB fold (BOF) protein DA391_10565 PF07690 Major Facilitator Superfamily DA391_10570 PF00990 Diguanylate cyclase, GGDEF domain DA391_10570 PF00563 EAL domain DA391_10570 PF13426 PAS domain DA391_10575 PF02678 Pirin DA391_10575 PF05726 Pirin C-terminal cupin domain DA391_10580 PF03466 LysR substrate binding domain DA391_10580 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DA391_10590 PF04285 Protein of unknown function (DUF444) DA391_10595 PF06798 PrkA serine protein kinase C-terminal domain DA391_10595 PF08298 PrkA AAA domain DA391_10605 PF06629 MltA-interacting protein MipA DA391_10610 PF01263 Aldose 1-epimerase DA391_10625 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain DA391_10625 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain DA391_10630 PF01641 SelR domain DA391_10635 PF07023 Protein of unknown function (DUF1315) DA391_10640 PF00857 Isochorismatase family DA391_10645 PF17763 Glutaminase/Asparaginase C-terminal domain DA391_10645 PF00710 Asparaginase, N-terminal DA391_10650 PF01343 Peptidase family S49 DA391_10655 PF00881 Nitroreductase family DA391_10660 PF02769 AIR synthase related protein, C-terminal domain DA391_10660 PF00586 AIR synthase related protein, N-terminal domain DA391_10665 PF01751 Toprim domain DA391_10665 PF01131 DNA topoisomerase DA391_10670 PF07383 Protein of unknown function (DUF1496) DA391_10675 PF00293 NUDIX domain DA391_10680 PF03372 Endonuclease/Exonuclease/phosphatase family DA391_10685 PF03466 LysR substrate binding domain DA391_10685 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DA391_10705 PF01842 ACT domain DA391_10705 PF00551 Formyl transferase DA391_10710 PF02810 SEC-C motif DA391_10720 PF01734 Patatin-like phospholipase DA391_10725 PF00072 Response regulator receiver domain DA391_10730 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain DA391_10730 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain DA391_10730 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain DA391_10735 PF00816 H-NS histone family DA391_10740 PF00265 Thymidine kinase DA391_10745 PF00171 Aldehyde dehydrogenase family DA391_10745 PF00465 Iron-containing alcohol dehydrogenase DA391_10750 PF01914 MarC family integral membrane protein DA391_10755 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle DA391_10760 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle DA391_10765 PF00528 Binding-protein-dependent transport system inner membrane component DA391_10770 PF00528 Binding-protein-dependent transport system inner membrane component DA391_10770 PF12911 N-terminal TM domain of oligopeptide transport permease C DA391_10775 PF08352 Oligopeptide/dipeptide transporter, C-terminal region DA391_10775 PF00005 ABC transporter DA391_10780 PF00005 ABC transporter DA391_10780 PF08352 Oligopeptide/dipeptide transporter, C-terminal region DA391_10785 PF04269 Protein of unknown function, DUF440 DA391_10790 PF13091 PLD-like domain DA391_10790 PF13396 Phospholipase_D-nuclease N-terminal DA391_10800 PF00563 EAL domain DA391_10810 PF03795 YCII-related domain DA391_10815 PF03544 Gram-negative bacterial TonB protein C-terminal DA391_10820 PF03061 Thioesterase superfamily DA391_10825 PF04279 Intracellular septation protein A DA391_10840 PF03922 OmpW family DA391_10850 PF00290 Tryptophan synthase alpha chain DA391_10855 PF00291 Pyridoxal-phosphate dependent enzyme DA391_10860 PF00218 Indole-3-glycerol phosphate synthase DA391_10860 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase DA391_10865 PF02885 Glycosyl transferase family, helical bundle domain DA391_10865 PF00591 Glycosyl transferase family, a/b domain DA391_10870 PF00117 Glutamine amidotransferase class-I DA391_10875 PF00425 chorismate binding enzyme DA391_10875 PF04715 Anthranilate synthase component I, N terminal region DA391_10885 PF02811 PHP domain DA391_10890 PF01300 Telomere recombination DA391_10895 PF03797 Autotransporter beta-domain DA391_10900 PF00072 Response regulator receiver domain DA391_10900 PF00196 Bacterial regulatory proteins, luxR family DA391_10910 PF00849 RNA pseudouridylate synthase DA391_10910 PF01479 S4 domain DA391_10915 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP DA391_10920 PF00106 short chain dehydrogenase DA391_10925 PF08496 Peptidase family S49 N-terminal DA391_10925 PF01343 Peptidase family S49 DA391_10930 PF10692 Protein of unknown function (DUF2498) DA391_10940 PF01751 Toprim domain DA391_10940 PF01396 Topoisomerase DNA binding C4 zinc finger DA391_10940 PF01131 DNA topoisomerase DA391_10940 PF08272 Topoisomerase I zinc-ribbon-like DA391_10945 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DA391_10945 PF03466 LysR substrate binding domain DA391_10955 PF00694 Aconitase C-terminal domain DA391_10955 PF00330 Aconitase family (aconitate hydratase) DA391_10960 PF00925 GTP cyclohydrolase II DA391_10965 PF01569 PAP2 superfamily DA391_10970 PF06305 Lipopolysaccharide assembly protein A domain DA391_10975 PF18073 Rubredoxin metal binding domain DA391_10985 PF07338 Protein of unknown function (DUF1471) DA391_10990 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family DA391_10995 PF01253 Translation initiation factor SUI1 DA391_11000 PF05433 Glycine zipper 2TM domain DA391_11005 PF00596 Class II Aldolase and Adducin N-terminal domain DA391_11015 PF00455 DeoR C terminal sensor domain DA391_11015 PF08220 DeoR-like helix-turn-helix domain DA391_11020 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DA391_11020 PF03466 LysR substrate binding domain DA391_11030 PF00923 Transaldolase/Fructose-6-phosphate aldolase DA391_11035 PF04328 Selenoprotein, putative DA391_11040 PF13722 5TM C-terminal transporter carbon starvation CstA DA391_11040 PF02554 Carbon starvation protein CstA DA391_11045 PF00773 RNB domain DA391_11045 PF08206 Ribonuclease B OB domain DA391_11045 PF00575 S1 RNA binding domain DA391_11050 PF00384 Molybdopterin oxidoreductase DA391_11055 PF00730 HhH-GPD superfamily base excision DNA repair protein DA391_11055 PF00633 Helix-hairpin-helix motif DA391_11055 PF10576 Iron-sulfur binding domain of endonuclease III DA391_11060 PF02508 Rnf-Nqr subunit, membrane protein DA391_11065 PF04205 FMN-binding domain DA391_11070 PF03116 NQR2, RnfD, RnfE family DA391_11075 PF06445 GyrI-like small molecule binding domain DA391_11075 PF12833 Helix-turn-helix domain DA391_11080 PF10531 SLBB domain DA391_11080 PF13237 4Fe-4S dicluster domain DA391_11080 PF13375 RnfC Barrel sandwich hybrid domain DA391_11080 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit DA391_11085 PF04060 Putative Fe-S cluster DA391_11090 PF02508 Rnf-Nqr subunit, membrane protein DA391_11095 PF10754 Protein of unknown function (DUF2569) DA391_11100 PF01268 Formate--tetrahydrofolate ligase DA391_11105 PF00005 ABC transporter DA391_11105 PF00664 ABC transporter transmembrane region DA391_11105 PF03412 Peptidase C39 family DA391_11110 PF13533 Biotin-lipoyl like DA391_11115 PF00005 ABC transporter DA391_11115 PF00664 ABC transporter transmembrane region DA391_11115 PF03412 Peptidase C39 family DA391_11120 PF02463 RecF/RecN/SMC N terminal domain DA391_11125 PF11762 L-arabinose isomerase C-terminal domain DA391_11125 PF02610 L-arabinose isomerase DA391_11130 PF02782 FGGY family of carbohydrate kinases, C-terminal domain DA391_11135 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family DA391_11140 PF00005 ABC transporter DA391_11145 PF02653 Branched-chain amino acid transport system / permease component DA391_11150 PF12833 Helix-turn-helix domain DA391_11150 PF02311 AraC-like ligand binding domain DA391_11155 PF02894 Oxidoreductase family, C-terminal alpha/beta domain DA391_11155 PF01408 Oxidoreductase family, NAD-binding Rossmann fold DA391_11160 PF13593 SBF-like CPA transporter family (DUF4137) DA391_11165 PF00962 Adenosine/AMP deaminase DA391_11170 PF00155 Aminotransferase class I and II DA391_11175 PF02378 Phosphotransferase system, EIIC DA391_11175 PF00367 phosphotransferase system, EIIB DA391_11180 PF00356 Bacterial regulatory proteins, lacI family DA391_11180 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family DA391_11200 PF06097 Bacterial protein of unknown function (DUF945) DA391_11205 PF01238 Phosphomannose isomerase type I DA391_11210 PF10415 Fumarase C C-terminus DA391_11210 PF00206 Lyase DA391_11215 PF05472 DNA replication terminus site-binding protein (Ter protein) DA391_11225 PF07690 Major Facilitator Superfamily DA391_11230 PF03466 LysR substrate binding domain DA391_11230 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DA391_11235 PF00480 ROK family DA391_11245 PF00654 Voltage gated chloride channel DA391_11250 PF06649 Protein of unknown function (DUF1161) DA391_11255 PF06932 Protein of unknown function (DUF1283) DA391_11260 PF02694 Uncharacterised BCR, YnfA/UPF0060 family DA391_11265 PF00106 short chain dehydrogenase DA391_11270 PF07690 Major Facilitator Superfamily DA391_11275 PF07338 Protein of unknown function (DUF1471) DA391_11280 PF00194 Eukaryotic-type carbonic anhydrase DA391_11310 PF02798 Glutathione S-transferase, N-terminal domain DA391_11320 PF01037 Lrp/AsnC ligand binding domain DA391_11325 PF00528 Binding-protein-dependent transport system inner membrane component DA391_11330 PF00528 Binding-protein-dependent transport system inner membrane component DA391_11335 PF00497 Bacterial extracellular solute-binding proteins, family 3 DA391_11345 PF10423 Bacterial AMP nucleoside phosphorylase N-terminus DA391_11345 PF01048 Phosphorylase superfamily DA391_11370 PF00282 Pyridoxal-dependent decarboxylase conserved domain DA391_11375 PF13520 Amino acid permease DA391_11380 PF04960 Glutaminase DA391_11385 PF13419 Haloacid dehalogenase-like hydrolase DA391_11405 PF00245 Alkaline phosphatase DA391_11415 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DA391_11415 PF03466 LysR substrate binding domain DA391_11420 PF06445 GyrI-like small molecule binding domain DA391_11435 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain DA391_11435 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain DA391_11440 PF13545 Crp-like helix-turn-helix domain DA391_11440 PF00027 Cyclic nucleotide-binding domain DA391_11445 PF00582 Universal stress protein family DA391_11450 PF02233 NAD(P) transhydrogenase beta subunit DA391_11455 PF05222 Alanine dehydrogenase/PNT, N-terminal domain DA391_11455 PF01262 Alanine dehydrogenase/PNT, C-terminal domain DA391_11455 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch DA391_11465 PF07338 Protein of unknown function (DUF1471) DA391_11470 PF13520 Amino acid permease DA391_11480 PF00072 Response regulator receiver domain DA391_11480 PF00486 Transcriptional regulatory protein, C terminal DA391_11485 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DA391_11485 PF00512 His Kinase A (phospho-acceptor) domain DA391_11485 PF00672 HAMP domain DA391_11490 PF02074 Carboxypeptidase Taq (M32) metallopeptidase DA391_11500 PF00089 Trypsin DA391_11510 PF05973 Phage derived protein Gp49-like (DUF891) DA391_11515 PF04408 Helicase associated domain (HA2) DA391_11515 PF00270 DEAD/DEAH box helicase DA391_11515 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold DA391_11515 PF11898 Domain of unknown function (DUF3418) DA391_11515 PF00271 Helicase conserved C-terminal domain DA391_11520 PF02525 Flavodoxin-like fold DA391_11525 PF00083 Sugar (and other) transporter DA391_11535 PF13693 Winged helix-turn-helix DNA-binding DA391_11540 PF04198 Putative sugar-binding domain DA391_11545 PF01232 Mannitol dehydrogenase Rossmann domain DA391_11545 PF08125 Mannitol dehydrogenase C-terminal domain DA391_11550 PF00370 FGGY family of carbohydrate kinases, N-terminal domain DA391_11550 PF02782 FGGY family of carbohydrate kinases, C-terminal domain DA391_11555 PF07690 Major Facilitator Superfamily DA391_11560 PF07027 Protein of unknown function (DUF1318) DA391_11565 PF13617 YnbE-like lipoprotein DA391_11570 PF11739 Dicarboxylate transport DA391_11575 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain DA391_11575 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain DA391_11580 PF03891 Domain of unknown function (DUF333) DA391_11585 PF00893 Small Multidrug Resistance protein DA391_11590 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase DA391_11590 PF10371 Domain of unknown function DA391_11590 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg DA391_11590 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain DA391_11590 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II DA391_11595 PF00232 Glycosyl hydrolase family 1 DA391_11600 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 DA391_11600 PF00367 phosphotransferase system, EIIB DA391_11600 PF02378 Phosphotransferase system, EIIC DA391_11605 PF03123 CAT RNA binding domain DA391_11605 PF00874 PRD domain DA391_11610 PF01171 PP-loop family DA391_11615 PF01544 CorA-like Mg2+ transporter protein DA391_11620 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle DA391_11625 PF00246 Zinc carboxypeptidase DA391_11630 PF13378 Enolase C-terminal domain-like DA391_11630 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain DA391_11635 PF08534 Redoxin DA391_11640 PF18024 Helix-turn-helix domain DA391_11640 PF00158 Sigma-54 interaction domain DA391_11655 PF05128 Domain of unknown function (DUF697) DA391_11660 PF04317 YcjX-like family, DUF463 DA391_11670 PF04024 PspC domain DA391_11675 PF06667 Phage shock protein B DA391_11680 PF04012 PspA/IM30 family DA391_11685 PF00158 Sigma-54 interaction domain DA391_11685 PF02954 Bacterial regulatory protein, Fis family DA391_11695 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle DA391_11700 PF00528 Binding-protein-dependent transport system inner membrane component DA391_11705 PF00528 Binding-protein-dependent transport system inner membrane component DA391_11705 PF12911 N-terminal TM domain of oligopeptide transport permease C DA391_11710 PF08352 Oligopeptide/dipeptide transporter, C-terminal region DA391_11710 PF00005 ABC transporter DA391_11715 PF00005 ABC transporter DA391_11730 PF00854 POT family DA391_11735 PF00753 Metallo-beta-lactamase superfamily DA391_11745 PF04893 Yip1 domain DA391_11750 PF11656 YjbD family (DUF3811) DA391_11755 PF00043 Glutathione S-transferase, C-terminal domain DA391_11755 PF02798 Glutathione S-transferase, N-terminal domain DA391_11760 PF08543 Phosphomethylpyrimidine kinase DA391_11765 PF00579 tRNA synthetases class I (W and Y) DA391_11765 PF01479 S4 domain DA391_11770 PF01243 Pyridoxamine 5'-phosphate oxidase DA391_11770 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region DA391_11775 PF09864 Membrane-bound lysozyme-inhibitor of c-type lysozyme DA391_11780 PF03702 Anhydro-N-acetylmuramic acid kinase DA391_11785 PF05433 Glycine zipper 2TM domain DA391_11790 PF01047 MarR family DA391_11795 PF07869 Protein of unknown function (DUF1656) DA391_11800 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion DA391_11800 PF00529 HlyD membrane-fusion protein of T1SS DA391_11805 PF04632 Fusaric acid resistance protein family DA391_11810 PF00248 Aldo/keto reductase family DA391_11815 PF06945 Protein of unknown function (DUF1289) DA391_11820 PF08019 Phosphoethanolamine transferase EptA/EptB DA391_11820 PF00884 Sulfatase DA391_11825 PF00440 Bacterial regulatory proteins, tetR family DA391_11825 PF16925 Tetracyclin repressor-like, C-terminal domain DA391_11830 PF00724 NADH:flavin oxidoreductase / NADH oxidase family DA391_11835 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily DA391_11840 PF00929 Exonuclease DA391_11845 PF00462 Glutaredoxin DA391_11850 PF00877 NlpC/P60 family DA391_11855 PF02777 Iron/manganese superoxide dismutases, C-terminal domain DA391_11855 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain DA391_11865 PF00356 Bacterial regulatory proteins, lacI family DA391_11870 PF03466 LysR substrate binding domain DA391_11870 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DA391_11875 PF07690 Major Facilitator Superfamily DA391_11885 PF00677 Lumazine binding domain DA391_11890 PF01554 MatE DA391_11905 PF02887 Pyruvate kinase, alpha/beta domain DA391_11905 PF00224 Pyruvate kinase, barrel domain DA391_11910 PF04728 Lipoprotein leucine-zipper DA391_11915 PF01476 LysM domain DA391_11915 PF17969 L,D-transpeptidase C-terminal domain DA391_11915 PF03734 L,D-transpeptidase catalytic domain DA391_11920 PF02657 Fe-S metabolism associated domain DA391_11925 PF00266 Aminotransferase class-V DA391_11930 PF01458 Uncharacterized protein family (UPF0051) DA391_11935 PF00005 ABC transporter DA391_11940 PF01458 Uncharacterized protein family (UPF0051) DA391_11945 PF01521 Iron-sulphur cluster biosynthesis DA391_11955 PF03061 Thioesterase superfamily DA391_11960 PF02913 FAD linked oxidases, C-terminal domain DA391_11960 PF13183 4Fe-4S dicluster domain DA391_11960 PF01565 FAD binding domain DA391_11965 PF01594 AI-2E family transporter DA391_11975 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain DA391_11975 PF00391 PEP-utilising enzyme, mobile domain DA391_11975 PF02896 PEP-utilising enzyme, TIM barrel domain DA391_11980 PF03618 Kinase/pyrophosphorylase DA391_11985 PF00793 DAHP synthetase I family DA391_11990 PF02696 Uncharacterized ACR, YdiU/UPF0061 family DA391_11995 PF03099 Biotin/lipoate A/B protein ligase family DA391_11995 PF10437 Bacterial lipoate protein ligase C-terminus DA391_12000 PF00877 NlpC/P60 family DA391_12010 PF00892 EamA-like transporter family DA391_12015 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase DA391_12020 PF01522 Polysaccharide deacetylase DA391_12025 PF02911 Formyl transferase, C-terminal domain DA391_12025 PF01370 NAD dependent epimerase/dehydratase family DA391_12025 PF00551 Formyl transferase DA391_12030 PF00535 Glycosyl transferase family 2 DA391_12035 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family DA391_12040 PF00005 ABC transporter DA391_12045 PF00255 Glutathione peroxidase DA391_12050 PF01032 FecCD transport family DA391_12060 PF00877 NlpC/P60 family DA391_12065 PF00392 Bacterial regulatory proteins, gntR family DA391_12065 PF07840 FadR C-terminal domain DA391_12075 PF06450 Bacterial Na+/H+ antiporter B (NhaB) DA391_12080 PF02600 Disulfide bond formation protein DsbB DA391_12090 PF03692 Putative zinc- or iron-chelating domain DA391_12095 PF01557 Fumarylacetoacetate (FAA) hydrolase family DA391_12100 PF05166 YcgL domain DA391_12105 PF05209 Septum formation inhibitor MinC, N-terminal domain DA391_12105 PF03775 Septum formation inhibitor MinC, C-terminal domain DA391_12110 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain DA391_12115 PF03776 Septum formation topological specificity factor MinE DA391_12120 PF00570 HRDC domain DA391_12120 PF01612 3'-5' exonuclease DA391_12125 PF00501 AMP-binding enzyme DA391_12125 PF13193 AMP-binding enzyme C-terminal domain DA391_12130 PF03843 Outer membrane lipoprotein Slp family DA391_12135 PF00814 Glycoprotease family DA391_12140 PF13307 Helicase C-terminal domain DA391_12140 PF04851 Type III restriction enzyme, res subunit DA391_12145 PF01042 Endoribonuclease L-PSP DA391_12150 PF00893 Small Multidrug Resistance protein DA391_12155 PF00893 Small Multidrug Resistance protein DA391_12160 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading DA391_12160 PF18416 N-acetylglucosamine binding protein domain 2 DA391_12165 PF01081 KDPG and KHG aldolase DA391_12170 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain DA391_12170 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain DA391_12175 PF01418 Helix-turn-helix domain, rpiR family DA391_12175 PF01380 SIS domain DA391_12180 PF02887 Pyruvate kinase, alpha/beta domain DA391_12180 PF00224 Pyruvate kinase, barrel domain DA391_12185 PF03279 Bacterial lipid A biosynthesis acyltransferase DA391_12190 PF08525 Opacity-associated protein A N-terminal motif DA391_12190 PF01551 Peptidase family M23 DA391_12190 PF01476 LysM domain DA391_12195 PF01297 Zinc-uptake complex component A periplasmic DA391_12200 PF00005 ABC transporter DA391_12205 PF00950 ABC 3 transport family DA391_12210 PF17864 RuvB AAA lid domain DA391_12210 PF05496 Holliday junction DNA helicase RuvB P-loop domain DA391_12210 PF05491 RuvB C-terminal winged helix domain DA391_12215 PF01330 RuvA N terminal domain DA391_12215 PF07499 RuvA, C-terminal domain DA391_12220 PF02075 Crossover junction endodeoxyribonuclease RuvC DA391_12225 PF01709 Transcriptional regulator DA391_12230 PF00293 NUDIX domain DA391_12235 PF02938 GAD domain DA391_12235 PF00152 tRNA synthetases class II (D, K and N) DA391_12235 PF01336 OB-fold nucleic acid binding domain DA391_12240 PF00857 Isochorismatase family DA391_12245 PF01904 Protein of unknown function DUF72 DA391_12250 PF01124 MAPEG family DA391_12255 PF13649 Methyltransferase domain DA391_12260 PF08003 Protein of unknown function (DUF1698) DA391_12265 PF03932 CutC family DA391_12270 PF06185 YecM protein DA391_12275 PF05746 DALR anticodon binding domain DA391_12275 PF03485 Arginyl tRNA synthetase N terminal domain DA391_12275 PF00750 tRNA synthetases class I (R) DA391_12280 PF03023 Lipid II flippase MurJ DA391_12285 PF01408 Oxidoreductase family, NAD-binding Rossmann fold DA391_12290 PF04337 Protein of unknown function, DUF480 DA391_12295 PF13302 Acetyltransferase (GNAT) domain DA391_12300 PF07690 Major Facilitator Superfamily DA391_12305 PF07273 Protein of unknown function (DUF1439) DA391_12310 PF02613 Nitrate reductase delta subunit DA391_12315 PF02811 PHP domain DA391_12320 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain DA391_12335 PF00990 Diguanylate cyclase, GGDEF domain DA391_12340 PF01740 STAS domain DA391_12340 PF00916 Sulfate permease family DA391_12345 PF00793 DAHP synthetase I family DA391_12350 PF13369 Transglutaminase-like superfamily DA391_12355 PF04247 Invasion gene expression up-regulator, SirB DA391_12360 PF17827 PrmC N-terminal domain DA391_12360 PF13847 Methyltransferase domain DA391_12365 PF03462 PCRF domain DA391_12365 PF00472 RF-1 domain DA391_12370 PF01488 Shikimate / quinate 5-dehydrogenase DA391_12370 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain DA391_12370 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain DA391_12375 PF03550 Outer membrane lipoprotein LolB DA391_12380 PF00288 GHMP kinases N terminal domain DA391_12380 PF08544 GHMP kinases C terminal DA391_12385 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase DA391_12385 PF14572 Phosphoribosyl synthetase-associated domain DA391_12390 PF10762 Protein of unknown function (DUF2583) DA391_12395 PF01195 Peptidyl-tRNA hydrolase DA391_12405 PF06071 Protein of unknown function (DUF933) DA391_12405 PF01926 50S ribosome-binding GTPase DA391_12410 PF13356 Arm DNA-binding domain DA391_12410 PF00589 Phage integrase family DA391_12455 PF00589 Phage integrase family DA391_12455 PF02899 Phage integrase, N-terminal SAM-like domain DA391_12460 PF04002 RadC-like JAB domain DA391_12480 PF13693 Winged helix-turn-helix DNA-binding DA391_12520 PF00145 C-5 cytosine-specific DNA methylase DA391_12540 PF09857 Putative toxin of bacterial toxin-antitoxin pair DA391_12545 PF13847 Methyltransferase domain DA391_12550 PF17287 POTRA domain DA391_12550 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB DA391_12550 PF08479 POTRA domain, ShlB-type DA391_12555 PF04829 Pre-toxin domain with VENN motif DA391_12555 PF13018 Extended Signal Peptide of Type V secretion system DA391_12555 PF13332 Hemagglutinin repeat DA391_12555 PF05860 haemagglutination activity domain DA391_12585 PF01212 Beta-eliminating lyase DA391_12595 PF03616 Sodium/glutamate symporter DA391_12600 PF00484 Carbonic anhydrase DA391_12605 PF12146 Serine aminopeptidase, S33 DA391_12610 PF00486 Transcriptional regulatory protein, C terminal DA391_12610 PF00072 Response regulator receiver domain DA391_12615 PF00512 His Kinase A (phospho-acceptor) domain DA391_12615 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DA391_12615 PF00672 HAMP domain DA391_12630 PF00248 Aldo/keto reductase family DA391_12635 PF00501 AMP-binding enzyme DA391_12635 PF13193 AMP-binding enzyme C-terminal domain DA391_12645 PF01494 FAD binding domain DA391_12650 PF00766 Electron transfer flavoprotein FAD-binding domain DA391_12650 PF01012 Electron transfer flavoprotein domain DA391_12655 PF01012 Electron transfer flavoprotein domain DA391_12660 PF12833 Helix-turn-helix domain DA391_12660 PF02311 AraC-like ligand binding domain DA391_12665 PF02771 Acyl-CoA dehydrogenase, N-terminal domain DA391_12665 PF00441 Acyl-CoA dehydrogenase, C-terminal domain DA391_12665 PF02770 Acyl-CoA dehydrogenase, middle domain DA391_12670 PF01144 Coenzyme A transferase DA391_12675 PF01487 Type I 3-dehydroquinase DA391_12680 PF18317 Shikimate 5'-dehydrogenase C-terminal domain DA391_12680 PF08501 Shikimate dehydrogenase substrate binding domain DA391_12685 PF07690 Major Facilitator Superfamily DA391_12690 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DA391_12690 PF03466 LysR substrate binding domain DA391_12695 PF07690 Major Facilitator Superfamily DA391_12700 PF08965 Domain of unknown function (DUF1870) DA391_12705 PF01551 Peptidase family M23 DA391_12705 PF01476 LysM domain DA391_12715 PF09223 ZinT (YodA) periplasmic lipocalin-like zinc-recruitment DA391_12720 PF02653 Branched-chain amino acid transport system / permease component DA391_12725 PF00005 ABC transporter DA391_12730 PF13407 Periplasmic binding protein domain DA391_12740 PF01979 Amidohydrolase family DA391_12745 PF07702 UTRA domain DA391_12745 PF00392 Bacterial regulatory proteins, gntR family DA391_12750 PF01979 Amidohydrolase family DA391_12760 PF00267 Gram-negative porin DA391_12765 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family DA391_12770 PF04996 Succinylarginine dihydrolase DA391_12775 PF00171 Aldehyde dehydrogenase family DA391_12780 PF04958 Arginine N-succinyltransferase beta subunit DA391_12785 PF00202 Aminotransferase class-III DA391_12790 PF00544 Pectate lyase DA391_12795 PF00155 Aminotransferase class I and II DA391_12795 PF00392 Bacterial regulatory proteins, gntR family DA391_12800 PF01654 Cytochrome bd terminal oxidase subunit I DA391_12805 PF02322 Cytochrome bd terminal oxidase subunit II DA391_12815 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term DA391_12815 PF07730 Histidine kinase DA391_12815 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DA391_12815 PF00672 HAMP domain DA391_12820 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DA391_12820 PF03466 LysR substrate binding domain DA391_12830 PF01699 Sodium/calcium exchanger protein DA391_12835 PF02562 PhoH-like protein DA391_12850 PF13994 PgaD-like protein DA391_12855 PF00535 Glycosyl transferase family 2 DA391_12860 PF01522 Polysaccharide deacetylase DA391_12860 PF14883 Hypothetical glycosyl hydrolase family 13 DA391_12870 PF00557 Metallopeptidase family M24 DA391_12880 PF03466 LysR substrate binding domain DA391_12880 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DA391_12885 PF09313 Domain of unknown function (DUF1971) DA391_12885 PF03848 Tellurite resistance protein TehB DA391_12895 PF00578 AhpC/TSA family DA391_12900 PF12704 MacB-like periplasmic core domain DA391_12900 PF02687 FtsX-like permease family DA391_12900 PF00005 ABC transporter DA391_12910 PF12704 MacB-like periplasmic core domain DA391_12910 PF02687 FtsX-like permease family DA391_12910 PF00005 ABC transporter DA391_12920 PF10634 Fe2+ transport protein DA391_12925 PF03239 Iron permease FTR1 family DA391_12935 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit DA391_12940 PF00232 Glycosyl hydrolase family 1 DA391_12945 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit DA391_12945 PF02378 Phosphotransferase system, EIIC DA391_12950 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit DA391_12955 PF00356 Bacterial regulatory proteins, lacI family DA391_12970 PF04960 Glutaminase DA391_12975 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain DA391_12975 PF00989 PAS fold DA391_12975 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DA391_12975 PF17203 Single cache domain 3 DA391_12980 PF00072 Response regulator receiver domain DA391_12985 PF03390 2-hydroxycarboxylate transporter family DA391_12990 PF00324 Amino acid permease DA391_12995 PF04343 Protein of unknown function, DUF488 DA391_13005 PF07690 Major Facilitator Superfamily DA391_13040 PF06183 DinI-like family DA391_13110 PF17482 Phage tail sheath C-terminal domain DA391_13110 PF04984 Phage tail sheath protein subtilisin-like domain DA391_13230 PF00717 Peptidase S24-like DA391_13230 PF01381 Helix-turn-helix DA391_13235 PF00717 Peptidase S24-like DA391_13235 PF01726 LexA DNA binding domain DA391_13340 PF00589 Phage integrase family DA391_13340 PF09003 Bacteriophage lambda integrase, Arm DNA-binding domain DA391_13345 PF00180 Isocitrate/isopropylmalate dehydrogenase DA391_13350 PF00849 RNA pseudouridylate synthase DA391_13355 PF00293 NUDIX domain DA391_13365 PF04356 Protein of unknown function (DUF489) DA391_13370 PF08328 Adenylosuccinate lyase C-terminal DA391_13370 PF00206 Lyase DA391_13380 PF00486 Transcriptional regulatory protein, C terminal DA391_13380 PF00072 Response regulator receiver domain DA391_13385 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DA391_13385 PF08918 PhoQ Sensor DA391_13390 PF08007 Cupin superfamily protein DA391_13395 PF07687 Peptidase dimerisation domain DA391_13395 PF01546 Peptidase family M20/M25/M40 DA391_13400 PF02146 Sir2 family DA391_13405 PF00480 ROK family DA391_13410 PF02687 FtsX-like permease family DA391_13410 PF12704 MacB-like periplasmic core domain DA391_13415 PF00005 ABC transporter DA391_13420 PF02687 FtsX-like permease family DA391_13420 PF12704 MacB-like periplasmic core domain DA391_13425 PF17757 UvrB interaction domain DA391_13425 PF03461 TRCF domain DA391_13425 PF00271 Helicase conserved C-terminal domain DA391_13425 PF02559 CarD-like/TRCF domain DA391_13425 PF00270 DEAD/DEAH box helicase DA391_13430 PF05433 Glycine zipper 2TM domain DA391_13440 PF07992 Pyridine nucleotide-disulphide oxidoreductase DA391_13445 PF05728 Uncharacterised protein family (UPF0227) DA391_13450 PF00933 Glycosyl hydrolase family 3 N terminal domain DA391_13455 PF01636 Phosphotransferase enzyme family DA391_13460 PF13036 Peptidoglycan-synthase activator LpoB DA391_13460 PF08139 Prokaryotic membrane lipoprotein lipid attachment site DA391_13465 PF07233 Protein of unknown function (DUF1425) DA391_13470 PF01230 HIT domain DA391_13475 PF08501 Shikimate dehydrogenase substrate binding domain DA391_13480 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle DA391_13480 PF12793 Sugar transport-related sRNA regulator N-term DA391_13485 PF00367 phosphotransferase system, EIIB DA391_13485 PF02378 Phosphotransferase system, EIIC DA391_13490 PF01026 TatD related DNase DA391_13495 PF09115 DNA polymerase III, delta subunit, C terminal DA391_13500 PF02223 Thymidylate kinase DA391_13505 PF02618 YceG-like family DA391_13510 PF01063 Amino-transferase class IV DA391_13515 PF00109 Beta-ketoacyl synthase, N-terminal domain DA391_13515 PF02801 Beta-ketoacyl synthase, C-terminal domain DA391_13520 PF00550 Phosphopantetheine attachment site DA391_13530 PF00698 Acyl transferase domain DA391_13535 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal DA391_13535 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III DA391_13540 PF02504 Fatty acid synthesis protein DA391_13545 PF01783 Ribosomal L32p protein family DA391_13550 PF02620 Large ribosomal RNA subunit accumulation protein YceD DA391_13555 PF02545 Maf-like protein DA391_13560 PF00849 RNA pseudouridylate synthase DA391_13560 PF01479 S4 domain DA391_13570 PF12111 Polyribonucleotide phosphorylase C terminal DA391_13570 PF00575 S1 RNA binding domain DA391_13570 PF10150 Ribonuclease E/G family DA391_13575 PF03992 Antibiotic biosynthesis monooxygenase DA391_13580 PF01979 Amidohydrolase family DA391_13585 PF06183 DinI-like family DA391_13590 PF13991 BssS protein family DA391_13595 PF01266 FAD dependent oxidoreductase DA391_13600 PF00072 Response regulator receiver domain DA391_13600 PF00196 Bacterial regulatory proteins, luxR family DA391_13610 PF01594 AI-2E family transporter DA391_13620 PF13536 Putative multidrug resistance efflux transporter DA391_13630 PF04879 Molybdopterin oxidoreductase Fe4S4 domain DA391_13630 PF01568 Molydopterin dinucleotide binding domain DA391_13630 PF00384 Molybdopterin oxidoreductase DA391_13635 PF03916 Polysulphide reductase, NrfD DA391_13640 PF13247 4Fe-4S dicluster domain DA391_13645 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DA391_13645 PF00512 His Kinase A (phospho-acceptor) domain DA391_13650 PF00072 Response regulator receiver domain DA391_13650 PF00196 Bacterial regulatory proteins, luxR family DA391_13655 PF03279 Bacterial lipid A biosynthesis acyltransferase DA391_13660 PF07681 DoxX DA391_13665 PF07690 Major Facilitator Superfamily DA391_13670 PF00854 POT family DA391_13680 PF07119 Protein of unknown function (DUF1375) DA391_13685 PF00535 Glycosyl transferase family 2 DA391_13690 PF04349 Periplasmic glucan biosynthesis protein, MdoG DA391_13695 PF01757 Acyltransferase family DA391_13705 PF02080 TrkA-C domain DA391_13705 PF03471 Transporter associated domain DA391_13705 PF00999 Sodium/hydrogen exchanger family DA391_13715 PF00765 Autoinducer synthase DA391_13720 PF00196 Bacterial regulatory proteins, luxR family DA391_13720 PF03472 Autoinducer binding domain DA391_13725 PF03918 Cytochrome C biogenesis protein DA391_13730 PF03918 Cytochrome C biogenesis protein DA391_13735 PF08534 Redoxin DA391_13740 PF01578 Cytochrome C assembly protein DA391_13740 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal DA391_13745 PF03916 Polysulphide reductase, NrfD DA391_13750 PF13247 4Fe-4S dicluster domain DA391_13750 PF00037 4Fe-4S binding domain DA391_13755 PF13435 Cytochrome c554 and c-prime DA391_13755 PF09699 Doubled CXXCH motif (Paired_CXXCH_1) DA391_13760 PF02335 Cytochrome c552 DA391_13765 PF03472 Autoinducer binding domain DA391_13765 PF00196 Bacterial regulatory proteins, luxR family DA391_13770 PF00765 Autoinducer synthase DA391_13785 PF01979 Amidohydrolase family DA391_13790 PF00206 Lyase DA391_13790 PF10397 Adenylosuccinate lyase C-terminus DA391_13795 PF02378 Phosphotransferase system, EIIC DA391_13795 PF00367 phosphotransferase system, EIIB DA391_13805 PF02502 Ribose/Galactose Isomerase DA391_13810 PF01380 SIS domain DA391_13810 PF01418 Helix-turn-helix domain, rpiR family DA391_13815 PF13407 Periplasmic binding protein domain DA391_13820 PF00005 ABC transporter DA391_13825 PF02653 Branched-chain amino acid transport system / permease component DA391_13830 PF00834 Ribulose-phosphate 3 epimerase family DA391_13835 PF00480 ROK family DA391_13840 PF00455 DeoR C terminal sensor domain DA391_13840 PF08220 DeoR-like helix-turn-helix domain DA391_13850 PF07690 Major Facilitator Superfamily DA391_13855 PF02782 FGGY family of carbohydrate kinases, C-terminal domain DA391_13855 PF00370 FGGY family of carbohydrate kinases, N-terminal domain DA391_13860 PF01791 DeoC/LacD family aldolase DA391_13870 PF06183 DinI-like family DA391_13875 PF06183 DinI-like family DA391_13880 PF03797 Autotransporter beta-domain DA391_13885 PF02413 Caudovirales tail fibre assembly protein, lambda gpK DA391_13890 PF07484 Phage Tail Collar Domain DA391_13940 PF04984 Phage tail sheath protein subtilisin-like domain DA391_13940 PF17482 Phage tail sheath C-terminal domain DA391_14030 PF00959 Phage lysozyme DA391_14040 PF15919 HicB_like antitoxin of bacterial toxin-antitoxin system DA391_14045 PF07927 HicA toxin of bacterial toxin-antitoxin, DA391_14055 PF06530 Phage antitermination protein Q DA391_14120 PF13356 Arm DNA-binding domain DA391_14120 PF14659 Phage integrase, N-terminal SAM-like domain DA391_14120 PF00589 Phage integrase family DA391_14130 PF04358 DsrC like protein DA391_14135 PF00708 Acylphosphatase DA391_14145 PF00717 Peptidase S24-like DA391_14155 PF17785 PUA-like domain DA391_14155 PF10672 S-adenosylmethionine-dependent methyltransferase DA391_14160 PF08755 Hemimethylated DNA-binding protein YccV like DA391_14165 PF13380 CoA binding domain DA391_14170 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) DA391_14175 PF02142 MGS-like domain DA391_14180 PF12462 DNA helicase IV / RNA helicase N terminal DA391_14180 PF00580 UvrD/REP helicase N-terminal domain DA391_14180 PF13361 UvrD-like helicase C-terminal domain DA391_14185 PF03733 Inner membrane component domain DA391_14190 PF12805 FUSC-like inner membrane protein yccS DA391_14195 PF04993 TfoX N-terminal domain DA391_14195 PF04994 TfoX C-terminal domain DA391_14200 PF03846 Cell division inhibitor SulA DA391_14205 PF01389 OmpA-like transmembrane domain DA391_14205 PF00691 OmpA family DA391_14210 PF06303 MatP N-terminal domain DA391_14210 PF17414 MatP C-terminal ribbon-helix-helix domain DA391_14215 PF13654 AAA domain DA391_14215 PF05362 Lon protease (S16) C-terminal proteolytic domain DA391_14220 PF07977 FabA-like domain DA391_14230 PF02801 Beta-ketoacyl synthase, C-terminal domain DA391_14230 PF00109 Beta-ketoacyl synthase, N-terminal domain DA391_14235 PF04957 Ribosome modulation factor DA391_14240 PF03886 ABC-type transport auxiliary lipoprotein component DA391_14245 PF02470 MlaD protein DA391_14250 PF04403 Paraquat-inducible protein A DA391_14255 PF00005 ABC transporter DA391_14255 PF12848 ABC transporter DA391_14255 PF16326 ABC transporter C-terminal domain DA391_14260 PF01170 Putative RNA methylase family UPF0020 DA391_14260 PF02926 THUMP domain DA391_14260 PF10672 S-adenosylmethionine-dependent methyltransferase DA391_14265 PF03476 MOSC N-terminal beta barrel domain DA391_14265 PF03473 MOSC domain DA391_14265 PF00111 2Fe-2S iron-sulfur cluster binding domain DA391_14270 PF07126 Cell-division protein ZapC DA391_14275 PF01180 Dihydroorotate dehydrogenase DA391_14280 PF01433 Peptidase family M1 domain DA391_14280 PF11940 Domain of unknown function (DUF3458) Ig-like fold DA391_14280 PF17432 Domain of unknown function (DUF3458_C) ARM repeats DA391_14285 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family DA391_14285 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain DA391_14290 PF01336 OB-fold nucleic acid binding domain DA391_14290 PF00152 tRNA synthetases class II (D, K and N) DA391_14295 PF00267 Gram-negative porin DA391_14300 PF00155 Aminotransferase class I and II DA391_14305 PF00563 EAL domain DA391_14305 PF12792 CSS motif domain associated with EAL DA391_14310 PF00753 Metallo-beta-lactamase superfamily DA391_14315 PF05951 Bacterial protein of unknown function (DUF882) DA391_14320 PF01471 Putative peptidoglycan binding domain DA391_14320 PF03734 L,D-transpeptidase catalytic domain DA391_14325 PF04310 MukB N-terminal DA391_14325 PF16330 MukB hinge domain DA391_14330 PF04288 MukE-like family DA391_14335 PF17193 MukF C-terminal domain DA391_14335 PF03882 MukF winged-helix domain DA391_14335 PF17192 MukF middle domain DA391_14345 PF02698 DUF218 domain DA391_14350 PF01636 Phosphotransferase enzyme family DA391_14355 PF02348 Cytidylyltransferase DA391_14360 PF03966 Trm112p-like protein DA391_14365 PF00313 'Cold-shock' DNA-binding domain DA391_14375 PF07063 Domain of unknown function (DUF1338) DA391_14380 PF02606 Tetraacyldisaccharide-1-P 4'-kinase DA391_14385 PF00664 ABC transporter transmembrane region DA391_14385 PF00005 ABC transporter DA391_14395 PF00216 Bacterial DNA-binding protein DA391_14400 PF00575 S1 RNA binding domain DA391_14405 PF02224 Cytidylate kinase DA391_14410 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) DA391_14415 PF00266 Aminotransferase class-V DA391_14420 PF04239 Protein of unknown function (DUF421) DA391_14425 PF00710 Asparaginase, N-terminal DA391_14425 PF17763 Glutaminase/Asparaginase C-terminal domain DA391_14430 PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding DA391_14430 PF18381 YcaO cyclodehydratase C-terminal domain DA391_14435 PF01226 Formate/nitrite transporter DA391_14440 PF02901 Pyruvate formate lyase-like DA391_14440 PF01228 Glycine radical DA391_14445 PF04055 Radical SAM superfamily DA391_14450 PF07690 Major Facilitator Superfamily DA391_14455 PF02403 Seryl-tRNA synthetase N-terminal domain DA391_14455 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) DA391_14460 PF00004 ATPase family associated with various cellular activities (AAA) DA391_14460 PF16193 AAA C-terminal domain DA391_14460 PF12002 MgsA AAA+ ATPase C terminal DA391_14465 PF03548 Outer membrane lipoprotein carrier protein LolA DA391_14470 PF09397 Ftsk gamma domain DA391_14470 PF13491 4TM region of DNA translocase FtsK/SpoIIIE DA391_14470 PF17854 FtsK alpha domain DA391_14470 PF01580 FtsK/SpoIIIE family DA391_14475 PF01037 Lrp/AsnC ligand binding domain DA391_14480 PF07992 Pyridine nucleotide-disulphide oxidoreductase DA391_14485 PF00005 ABC transporter DA391_14485 PF00664 ABC transporter transmembrane region DA391_14490 PF00005 ABC transporter DA391_14490 PF00664 ABC transporter transmembrane region DA391_14495 PF03588 Leucyl/phenylalanyl-tRNA protein transferase DA391_14500 PF01176 Translation initiation factor 1A / IF-1 DA391_14505 PF07724 AAA domain (Cdc48 subfamily) DA391_14505 PF02861 Clp amino terminal domain, pathogenicity island component DA391_14505 PF17871 AAA lid domain DA391_14505 PF00004 ATPase family associated with various cellular activities (AAA) DA391_14505 PF10431 C-terminal, D2-small domain, of ClpB protein DA391_14510 PF02617 ATP-dependent Clp protease adaptor protein ClpS DA391_14515 PF00313 'Cold-shock' DNA-binding domain DA391_14520 PF02687 FtsX-like permease family DA391_14520 PF00005 ABC transporter DA391_14520 PF12704 MacB-like periplasmic core domain DA391_14525 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion DA391_14530 PF04393 Protein of unknown function (DUF535) DA391_14535 PF11398 Protein of unknown function (DUF2813) DA391_14540 PF03956 Lysine exporter LysO DA391_14545 PF03063 Prismane/CO dehydrogenase family DA391_14550 PF00970 Oxidoreductase FAD-binding domain DA391_14550 PF00111 2Fe-2S iron-sulfur cluster binding domain DA391_14550 PF00175 Oxidoreductase NAD-binding domain DA391_14555 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain DA391_14555 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain DA391_14555 PF00205 Thiamine pyrophosphate enzyme, central domain DA391_14565 PF01212 Beta-eliminating lyase DA391_14570 PF11066 Protein of unknown function (DUF2867) DA391_14570 PF13460 NAD(P)H-binding DA391_14575 PF01370 NAD dependent epimerase/dehydratase family DA391_14580 PF12883 Protein of unknown function (DUF3828) DA391_14585 PF01817 Chorismate mutase type II DA391_14590 PF00005 ABC transporter DA391_14595 PF00497 Bacterial extracellular solute-binding proteins, family 3 DA391_14600 PF00528 Binding-protein-dependent transport system inner membrane component DA391_14605 PF00528 Binding-protein-dependent transport system inner membrane component DA391_14610 PF00497 Bacterial extracellular solute-binding proteins, family 3 DA391_14615 PF05958 tRNA (Uracil-5-)-methyltransferase DA391_14620 PF10767 Protein of unknown function (DUF2593) DA391_14625 PF00528 Binding-protein-dependent transport system inner membrane component DA391_14630 PF00528 Binding-protein-dependent transport system inner membrane component DA391_14635 PF00005 ABC transporter DA391_14635 PF08402 TOBE domain DA391_14645 PF13416 Bacterial extracellular solute-binding protein DA391_14650 PF10722 Putative bacterial sensory transduction regulator DA391_14655 PF07214 Protein of unknown function (DUF1418) DA391_14660 PF00462 Glutaredoxin DA391_14665 PF02080 TrkA-C domain DA391_14665 PF06826 Predicted Permease Membrane Region DA391_14680 PF04754 Putative transposase, YhgA-like DA391_14690 PF01569 PAP2 superfamily DA391_14695 PF01791 DeoC/LacD family aldolase DA391_14700 PF00455 DeoR C terminal sensor domain DA391_14700 PF08220 DeoR-like helix-turn-helix domain DA391_14710 PF03313 Serine dehydratase alpha chain DA391_14710 PF03315 Serine dehydratase beta chain DA391_14715 PF00768 D-alanyl-D-alanine carboxypeptidase DA391_14715 PF07943 Penicillin-binding protein 5, C-terminal domain DA391_14720 PF00571 CBS domain DA391_14720 PF00291 Pyridoxal-phosphate dependent enzyme DA391_14725 PF01053 Cys/Met metabolism PLP-dependent enzyme DA391_14740 PF00528 Binding-protein-dependent transport system inner membrane component DA391_14745 PF09383 NIL domain DA391_14745 PF00005 ABC transporter DA391_14750 PF03180 NLPA lipoprotein DA391_14765 PF00043 Glutathione S-transferase, C-terminal domain DA391_14765 PF13417 Glutathione S-transferase, N-terminal domain DA391_14770 PF07715 TonB-dependent Receptor Plug Domain DA391_14770 PF00593 TonB dependent receptor DA391_14775 PF00324 Amino acid permease DA391_14780 PF03466 LysR substrate binding domain DA391_14780 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DA391_14790 PF03601 Conserved hypothetical protein 698 DA391_14795 PF01261 Xylose isomerase-like TIM barrel DA391_14800 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit DA391_14800 PF02378 Phosphotransferase system, EIIC DA391_14805 PF00294 pfkB family carbohydrate kinase DA391_14810 PF00381 PTS HPr component phosphorylation site DA391_14810 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 DA391_14815 PF13344 Haloacid dehalogenase-like hydrolase DA391_14815 PF00293 NUDIX domain DA391_14820 PF03692 Putative zinc- or iron-chelating domain DA391_14825 PF03222 Tryptophan/tyrosine permease family DA391_14830 PF09285 Elongation factor P, C-terminal DA391_14830 PF01132 Elongation factor P (EF-P) OB domain DA391_14830 PF08207 Elongation factor P (EF-P) KOW-like domain DA391_14835 PF03786 D-mannonate dehydratase (UxuA) DA391_14845 PF08125 Mannitol dehydrogenase C-terminal domain DA391_14845 PF01232 Mannitol dehydrogenase Rossmann domain DA391_14850 PF00392 Bacterial regulatory proteins, gntR family DA391_14850 PF07729 FCD domain DA391_14860 PF07683 Cobalamin synthesis protein cobW C-terminal domain DA391_14860 PF02492 CobW/HypB/UreG, nucleotide-binding domain DA391_14865 PF01569 PAP2 superfamily DA391_14870 PF00877 NlpC/P60 family DA391_14875 PF00563 EAL domain DA391_14875 PF12792 CSS motif domain associated with EAL DA391_14880 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle DA391_14885 PF00528 Binding-protein-dependent transport system inner membrane component DA391_14890 PF00528 Binding-protein-dependent transport system inner membrane component DA391_14890 PF12911 N-terminal TM domain of oligopeptide transport permease C DA391_14895 PF08352 Oligopeptide/dipeptide transporter, C-terminal region DA391_14895 PF00005 ABC transporter DA391_14900 PF13989 YejG-like protein DA391_14905 PF07690 Major Facilitator Superfamily DA391_14910 PF01479 S4 domain DA391_14910 PF00849 RNA pseudouridylate synthase DA391_14915 PF00271 Helicase conserved C-terminal domain DA391_14915 PF04851 Type III restriction enzyme, res subunit DA391_14920 PF01386 Ribosomal L25p family DA391_14925 PF04245 37-kD nucleoid-associated bacterial protein DA391_14930 PF07208 Protein of unknown function (DUF1414) DA391_14935 PF11893 Domain of unknown function (DUF3413) DA391_14935 PF00884 Sulfatase DA391_14945 PF06183 DinI-like family DA391_14950 PF13472 GDSL-like Lipase/Acylhydrolase family DA391_14950 PF07859 alpha/beta hydrolase fold DA391_14955 PF00419 Fimbrial protein DA391_14955 PF09160 FimH, mannose binding DA391_14970 PF00419 Fimbrial protein DA391_14980 PF02753 Pili assembly chaperone PapD, C-terminal domain DA391_14980 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain DA391_14985 PF00419 Fimbrial protein DA391_14990 PF00232 Glycosyl hydrolase family 1 DA391_14995 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 DA391_14995 PF00367 phosphotransferase system, EIIB DA391_14995 PF02378 Phosphotransferase system, EIIC DA391_15000 PF01380 SIS domain DA391_15000 PF01418 Helix-turn-helix domain, rpiR family DA391_15005 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain DA391_15005 PF02753 Pili assembly chaperone PapD, C-terminal domain DA391_15015 PF13954 PapC N-terminal domain DA391_15015 PF00577 Outer membrane usher protein DA391_15015 PF13953 PapC C-terminal domain DA391_15020 PF02753 Pili assembly chaperone PapD, C-terminal domain DA391_15020 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain DA391_15030 PF06183 DinI-like family DA391_15035 PF01278 Omptin family DA391_15040 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DA391_15040 PF00672 HAMP domain DA391_15040 PF02743 Cache domain DA391_15045 PF12706 Beta-lactamase superfamily domain DA391_15055 PF00144 Beta-lactamase DA391_15070 PF00267 Gram-negative porin DA391_15075 PF00529 HlyD membrane-fusion protein of T1SS DA391_15080 PF00005 ABC transporter DA391_15080 PF00664 ABC transporter transmembrane region DA391_15095 PF07690 Major Facilitator Superfamily DA391_15100 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DA391_15100 PF16359 RcsD-ABL domain DA391_15100 PF01627 Hpt domain DA391_15105 PF00072 Response regulator receiver domain DA391_15105 PF00196 Bacterial regulatory proteins, luxR family DA391_15110 PF00072 Response regulator receiver domain DA391_15110 PF09456 RcsC Alpha-Beta-Loop (ABL) DA391_15110 PF00512 His Kinase A (phospho-acceptor) domain DA391_15110 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DA391_15115 PF00521 DNA gyrase/topoisomerase IV, subunit A DA391_15115 PF03989 DNA gyrase C-terminal domain, beta-propeller DA391_15125 PF02867 Ribonucleotide reductase, barrel domain DA391_15125 PF03477 ATP cone domain DA391_15125 PF00317 Ribonucleotide reductase, all-alpha domain DA391_15130 PF00268 Ribonucleotide reductase, small chain DA391_15135 PF00111 2Fe-2S iron-sulfur cluster binding domain DA391_15140 PF03974 Ecotin DA391_15145 PF00994 Probable molybdopterin binding domain DA391_15150 PF03222 Tryptophan/tyrosine permease family DA391_15155 PF07437 YfaZ precursor DA391_15160 PF06628 Catalase-related immune-responsive DA391_15160 PF00199 Catalase DA391_15175 PF00501 AMP-binding enzyme DA391_15175 PF13193 AMP-binding enzyme C-terminal domain DA391_15180 PF13378 Enolase C-terminal domain-like DA391_15185 PF00378 Enoyl-CoA hydratase/isomerase DA391_15190 PF12697 Alpha/beta hydrolase family DA391_15195 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain DA391_15195 PF16582 Middle domain of thiamine pyrophosphate DA391_15195 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain DA391_15200 PF00425 chorismate binding enzyme DA391_15210 PF05957 Bacterial protein of unknown function (DUF883) DA391_15215 PF00920 Dehydratase family DA391_15220 PF03928 Haem-degrading DA391_15225 PF07690 Major Facilitator Superfamily DA391_15230 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain DA391_15230 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain DA391_15235 PF00356 Bacterial regulatory proteins, lacI family DA391_15240 PF00106 short chain dehydrogenase DA391_15245 PF01202 Shikimate kinase DA391_15250 PF04074 YhcH/YjgK/YiaL DA391_15255 PF06496 Protein of unknown function (DUF1097) DA391_15270 PF00361 Proton-conducting membrane transporter DA391_15275 PF00361 Proton-conducting membrane transporter DA391_15280 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus DA391_15280 PF00361 Proton-conducting membrane transporter DA391_15285 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L DA391_15290 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 DA391_15295 PF12838 4Fe-4S dicluster domain DA391_15300 PF00146 NADH dehydrogenase DA391_15305 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region DA391_15305 PF01568 Molydopterin dinucleotide binding domain DA391_15305 PF04879 Molybdopterin oxidoreductase Fe4S4 domain DA391_15305 PF00384 Molybdopterin oxidoreductase DA391_15310 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit DA391_15310 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region DA391_15310 PF10531 SLBB domain DA391_15320 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit DA391_15320 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit DA391_15325 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit DA391_15330 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 DA391_15335 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DA391_15335 PF03466 LysR substrate binding domain DA391_15340 PF00155 Aminotransferase class I and II DA391_15355 PF02080 TrkA-C domain DA391_15355 PF03600 Citrate transporter DA391_15365 PF13419 Haloacid dehalogenase-like hydrolase DA391_15370 PF03887 YfbU domain DA391_15375 PF04217 Protein of unknown function, DUF412 DA391_15380 PF00871 Acetokinase family DA391_15385 PF01515 Phosphate acetyl/butaryl transferase DA391_15385 PF07085 DRTGG domain DA391_15390 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family DA391_15390 PF00356 Bacterial regulatory proteins, lacI family DA391_15395 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 DA391_15405 PF03611 PTS system sugar-specific permease component DA391_15410 PF03459 TOBE domain DA391_15410 PF00005 ABC transporter DA391_15415 PF00528 Binding-protein-dependent transport system inner membrane component DA391_15425 PF10766 Multidrug efflux pump-associated protein AcrZ DA391_15430 PF03459 TOBE domain DA391_15430 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DA391_15435 PF00005 ABC transporter DA391_15445 PF16363 GDP-mannose 4,6 dehydratase DA391_15450 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain DA391_15450 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain DA391_15455 PF00288 GHMP kinases N terminal domain DA391_15455 PF08544 GHMP kinases C terminal DA391_15455 PF10509 Galactokinase galactose-binding signature DA391_15460 PF01263 Aldose 1-epimerase DA391_15470 PF00300 Histidine phosphatase superfamily (branch 1) DA391_15475 PF00793 DAHP synthetase I family DA391_15480 PF01545 Cation efflux family DA391_15485 PF04973 Nicotinamide mononucleotide transporter DA391_15490 PF02445 Quinolinate synthetase A protein DA391_15520 PF13174 Tetratricopeptide repeat DA391_15520 PF16331 TolA binding protein trimerisation DA391_15525 PF00691 OmpA family DA391_15530 PF07676 WD40-like Beta Propeller Repeat DA391_15530 PF04052 TolB amino-terminal domain DA391_15535 PF06519 TolA C-terminal DA391_15535 PF06519 TolA C-terminal DA391_15540 PF02472 Biopolymer transport protein ExbD/TolR DA391_15545 PF01618 MotA/TolQ/ExbB proton channel family DA391_15550 PF03061 Thioesterase superfamily DA391_15555 PF09600 Cyd operon protein YbgE (Cyd_oper_YbgE) DA391_15560 PF08173 Membrane bound YbgT-like protein DA391_15565 PF02322 Cytochrome bd terminal oxidase subunit II DA391_15570 PF01654 Cytochrome bd terminal oxidase subunit I DA391_15575 PF02872 5'-nucleotidase, C-terminal domain DA391_15575 PF00149 Calcineurin-like phosphoesterase DA391_15580 PF00549 CoA-ligase DA391_15580 PF02629 CoA binding domain DA391_15585 PF08442 ATP-grasp domain DA391_15585 PF00549 CoA-ligase DA391_15590 PF02817 e3 binding domain DA391_15590 PF00364 Biotin-requiring enzyme DA391_15590 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) DA391_15595 PF16870 2-oxoglutarate dehydrogenase C-terminal DA391_15595 PF00676 Dehydrogenase E1 component DA391_15595 PF16078 2-oxoglutarate dehydrogenase N-terminus DA391_15595 PF02779 Transketolase, pyrimidine binding domain DA391_15600 PF13085 2Fe-2S iron-sulfur cluster binding domain DA391_15605 PF00890 FAD binding domain DA391_15605 PF02910 Fumarate reductase flavoprotein C-term DA391_15610 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit DA391_15615 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit DA391_15620 PF00285 Citrate synthase, C-terminal domain DA391_15625 PF01470 Pyroglutamyl peptidase DA391_15640 PF03746 LamB/YcsF family DA391_15645 PF02626 Carboxyltransferase domain, subdomain A and B DA391_15650 PF02682 Carboxyltransferase domain, subdomain C and D DA391_15655 PF01784 NIF3 (NGG1p interacting factor 3) DA391_15660 PF02112 cAMP phosphodiesterases class-II DA391_15665 PF03441 FAD binding domain of DNA photolyase DA391_15665 PF00875 DNA photolyase DA391_15670 PF08349 Protein of unknown function (DUF1722) DA391_15675 PF10725 Protein of unknown function (DUF2517) DA391_15680 PF09604 F subunit of K+-transporting ATPase (Potass_KdpF) DA391_15685 PF03814 Potassium-transporting ATPase A subunit DA391_15695 PF02669 K+-transporting ATPase, c chain DA391_15700 PF13493 Domain of unknown function (DUF4118) DA391_15700 PF13492 GAF domain DA391_15700 PF00512 His Kinase A (phospho-acceptor) domain DA391_15700 PF02702 Osmosensitive K+ channel His kinase sensor domain DA391_15700 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DA391_15705 PF00486 Transcriptional regulatory protein, C terminal DA391_15705 PF00072 Response regulator receiver domain DA391_15715 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain DA391_15715 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II DA391_15715 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I DA391_15715 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III DA391_15720 PF03925 SeqA protein C-terminal domain DA391_15720 PF17206 SeqA protein N-terminal domain DA391_15725 PF12697 Alpha/beta hydrolase family DA391_15730 PF01402 Ribbon-helix-helix protein, copG family DA391_15735 PF02203 Tar ligand binding domain homologue DA391_15735 PF00672 HAMP domain DA391_15735 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DA391_15740 PF00258 Flavodoxin DA391_15745 PF01475 Ferric uptake regulator family DA391_15755 PF02838 Glycosyl hydrolase family 20, domain 2 DA391_15755 PF00728 Glycosyl hydrolase family 20, catalytic domain DA391_15755 PF03174 Chitobiase/beta-hexosaminidase C-terminal domain DA391_15755 PF03173 Putative carbohydrate binding domain DA391_15760 PF13982 YbfN-like lipoprotein DA391_15765 PF03573 outer membrane porin, OprD family DA391_15770 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain DA391_15770 PF00749 tRNA synthetases class I (E and Q), catalytic domain DA391_15775 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 DA391_15775 PF00367 phosphotransferase system, EIIB DA391_15775 PF02378 Phosphotransferase system, EIIC DA391_15780 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase DA391_15785 PF01979 Amidohydrolase family DA391_15790 PF01047 MarR family DA391_15790 PF00480 ROK family DA391_15795 PF13344 Haloacid dehalogenase-like hydrolase DA391_15800 PF00733 Asparagine synthase DA391_15800 PF13537 Glutamine amidotransferase domain DA391_15835 PF01494 FAD binding domain DA391_15840 PF00919 Uncharacterized protein family UPF0004 DA391_15840 PF01938 TRAM domain DA391_15840 PF04055 Radical SAM superfamily DA391_15845 PF02562 PhoH-like protein DA391_15850 PF02130 Uncharacterized protein family UPF0054 DA391_15855 PF00571 CBS domain DA391_15855 PF03471 Transporter associated domain DA391_15860 PF00795 Carbon-nitrogen hydrolase DA391_15870 PF00497 Bacterial extracellular solute-binding proteins, family 3 DA391_15875 PF00528 Binding-protein-dependent transport system inner membrane component DA391_15880 PF00528 Binding-protein-dependent transport system inner membrane component DA391_15885 PF00005 ABC transporter DA391_15890 PF07295 Zinc-ribbon containing domain DA391_15895 PF08264 Anticodon-binding domain of tRNA DA391_15895 PF00133 tRNA synthetases class I (I, L, M and V) DA391_15895 PF13603 Leucyl-tRNA synthetase, Domain 2 DA391_15900 PF04390 Lipopolysaccharide-assembly DA391_15905 PF14840 Processivity clamp loader gamma complex DNA pol III C-term DA391_15905 PF06144 DNA polymerase III, delta subunit DA391_15910 PF01467 Cytidylyltransferase-like DA391_15915 PF01040 UbiA prenyltransferase family DA391_16040 PF03245 Bacteriophage Rz lysis protein DA391_16045 PF00959 Phage lysozyme DA391_16060 PF06530 Phage antitermination protein Q DA391_16075 PF07102 Protein of unknown function (DUF1364) DA391_16095 PF05772 NinB protein DA391_16120 PF03796 DnaB-like helicase C terminal domain DA391_16120 PF00772 DnaB-like helicase N terminal domain DA391_16140 PF01381 Helix-turn-helix DA391_16140 PF00717 Peptidase S24-like DA391_16180 PF06630 Enterobacterial exodeoxyribonuclease VIII DA391_16180 PF12684 PDDEXK-like domain of unknown function (DUF3799) DA391_16220 PF05063 MT-A70 DA391_16240 PF00589 Phage integrase family DA391_16240 PF09003 Bacteriophage lambda integrase, Arm DNA-binding domain DA391_16250 PF02590 Predicted SPOUT methyltransferase DA391_16255 PF00905 Penicillin binding protein transpeptidase domain DA391_16255 PF03717 Penicillin-binding Protein dimerisation domain DA391_16260 PF01098 Cell cycle protein DA391_16265 PF05036 Sporulation related domain DA391_16265 PF03330 Lytic transglycolase DA391_16270 PF00768 D-alanyl-D-alanine carboxypeptidase DA391_16270 PF07943 Penicillin-binding protein 5, C-terminal domain DA391_16275 PF04359 Protein of unknown function (DUF493) DA391_16280 PF03099 Biotin/lipoate A/B protein ligase family DA391_16285 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family DA391_16285 PF04055 Radical SAM superfamily DA391_16290 PF02416 mttA/Hcf106 family DA391_16295 PF05230 MASE2 domain DA391_16295 PF00990 Diguanylate cyclase, GGDEF domain DA391_16300 PF02537 CrcB-like protein, Camphor Resistance (CrcB) DA391_16305 PF00313 'Cold-shock' DNA-binding domain DA391_16310 PF00313 'Cold-shock' DNA-binding domain DA391_16315 PF00196 Bacterial regulatory proteins, luxR family DA391_16325 PF00149 Calcineurin-like phosphoesterase DA391_16340 PF00005 ABC transporter DA391_16340 PF00664 ABC transporter transmembrane region DA391_16345 PF08007 Cupin superfamily protein DA391_16355 PF10397 Adenylosuccinate lyase C-terminus DA391_16355 PF00206 Lyase DA391_16360 PF00939 Sodium:sulfate symporter transmembrane region DA391_16370 PF04391 Protein of unknown function (DUF533) DA391_16380 PF01306 LacY proton/sugar symporter DA391_16385 PF00294 pfkB family carbohydrate kinase DA391_16390 PF00251 Glycosyl hydrolases family 32 N-terminal domain DA391_16390 PF08244 Glycosyl hydrolases family 32 C terminal DA391_16395 PF00356 Bacterial regulatory proteins, lacI family DA391_16395 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family DA391_16405 PF00294 pfkB family carbohydrate kinase DA391_16410 PF04227 Indigoidine synthase A like protein DA391_16415 PF07662 Na+ dependent nucleoside transporter C-terminus DA391_16415 PF01773 Na+ dependent nucleoside transporter N-terminus DA391_16435 PF03544 Gram-negative bacterial TonB protein C-terminal DA391_16460 PF06519 TolA C-terminal DA391_16480 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain DA391_16480 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain DA391_16505 PF00419 Fimbrial protein DA391_16515 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain DA391_16515 PF02753 Pili assembly chaperone PapD, C-terminal domain DA391_16520 PF13953 PapC C-terminal domain DA391_16520 PF13954 PapC N-terminal domain DA391_16520 PF00577 Outer membrane usher protein DA391_16525 PF00419 Fimbrial protein DA391_16545 PF01406 tRNA synthetases class I (C) catalytic domain DA391_16545 PF09190 DALR domain DA391_16550 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD DA391_16555 PF00149 Calcineurin-like phosphoesterase DA391_16560 PF00731 AIR carboxylase DA391_16565 PF02222 ATP-grasp domain DA391_16565 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain DA391_16575 PF00005 ABC transporter DA391_16580 PF13472 GDSL-like Lipase/Acylhydrolase family DA391_16585 PF00106 short chain dehydrogenase DA391_16590 PF00085 Thioredoxin DA391_16595 PF01145 SPFH domain / Band 7 family DA391_16595 PF16200 C-terminal region of band_7 DA391_16600 PF01957 NfeD-like C-terminal, partner-binding DA391_16610 PF00403 Heavy-metal-associated domain DA391_16615 PF01963 TraB family DA391_16620 PF04073 Aminoacyl-tRNA editing domain DA391_16625 PF02872 5'-nucleotidase, C-terminal domain DA391_16625 PF00149 Calcineurin-like phosphoesterase DA391_16630 PF07690 Major Facilitator Superfamily DA391_16635 PF02254 TrkA-N domain DA391_16635 PF00999 Sodium/hydrogen exchanger family DA391_16640 PF00294 pfkB family carbohydrate kinase DA391_16645 PF02706 Chain length determinant protein DA391_16650 PF16363 GDP-mannose 4,6 dehydratase DA391_16655 PF00534 Glycosyl transferases group 1 DA391_16655 PF13439 Glycosyltransferase Family 4 DA391_16660 PF01370 NAD dependent epimerase/dehydratase family DA391_16690 PF00762 Ferrochelatase DA391_16695 PF05191 Adenylate kinase, active site lid DA391_16700 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DA391_16700 PF00183 Hsp90 protein DA391_16705 PF13662 Toprim domain DA391_16705 PF02132 RecR protein DA391_16710 PF02575 YbaB/EbfC DNA-binding family DA391_16715 PF12169 DNA polymerase III subunits gamma and tau domain III DA391_16715 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding DA391_16715 PF12170 DNA polymerase III tau subunit V interacting with alpha DA391_16720 PF00156 Phosphoribosyl transferase domain DA391_16725 PF04304 Protein of unknown function (DUF454) DA391_16735 PF10689 Protein of unknown function (DUF2496) DA391_16740 PF12795 Mechanosensitive ion channel porin domain DA391_16740 PF00924 Mechanosensitive ion channel DA391_16740 PF12794 Mechanosensitive ion channel inner membrane domain 1 DA391_16745 PF02635 DsrE/DsrF-like family DA391_16750 PF08361 MAATS-type transcriptional repressor, C-terminal region DA391_16750 PF00440 Bacterial regulatory proteins, tetR family DA391_16755 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion DA391_16755 PF00529 HlyD membrane-fusion protein of T1SS DA391_16760 PF00873 AcrB/AcrD/AcrF family DA391_16770 PF01168 Alanine racemase, N-terminal domain DA391_16775 PF01676 Metalloenzyme superfamily DA391_16780 PF01197 Ribosomal protein L31 DA391_16785 PF00444 Ribosomal protein L36 DA391_16790 PF01297 Zinc-uptake complex component A periplasmic DA391_16795 PF00950 ABC 3 transport family DA391_16800 PF00005 ABC transporter DA391_16810 PF10757 Biofilm formation regulator YbaJ DA391_16815 PF05321 Haemolysin expression modulating protein DA391_16820 PF03797 Autotransporter beta-domain DA391_16840 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain DA391_16845 PF09619 Type III secretion system lipoprotein chaperone (YscW) DA391_16855 PF00909 Ammonium Transporter Family DA391_16860 PF00543 Nitrogen regulatory protein P-II DA391_16865 PF00664 ABC transporter transmembrane region DA391_16865 PF00005 ABC transporter DA391_16870 PF00005 ABC transporter DA391_16870 PF00664 ABC transporter transmembrane region DA391_16875 PF01037 Lrp/AsnC ligand binding domain DA391_16875 PF13404 AsnC-type helix-turn-helix domain DA391_16890 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle DA391_16890 PF12793 Sugar transport-related sRNA regulator N-term DA391_16895 PF06508 Queuosine biosynthesis protein QueC DA391_16910 PF13145 PPIC-type PPIASE domain DA391_16915 PF00216 Bacterial DNA-binding protein DA391_16920 PF02190 ATP-dependent protease La (LON) substrate-binding domain DA391_16920 PF05362 Lon protease (S16) C-terminal proteolytic domain DA391_16920 PF00004 ATPase family associated with various cellular activities (AAA) DA391_16925 PF10431 C-terminal, D2-small domain, of ClpB protein DA391_16925 PF06689 ClpX C4-type zinc finger DA391_16925 PF07724 AAA domain (Cdc48 subfamily) DA391_16930 PF00574 Clp protease DA391_16935 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase DA391_16935 PF05697 Bacterial trigger factor protein (TF) DA391_16935 PF05698 Bacterial trigger factor protein (TF) C-terminus DA391_16945 PF01722 BolA-like protein DA391_16950 PF03923 Uncharacterized lipoprotein DA391_16950 PF08139 Prokaryotic membrane lipoprotein lipid attachment site DA391_16955 PF07690 Major Facilitator Superfamily DA391_16960 PF03502 Nucleoside-specific channel-forming protein, Tsx DA391_16965 PF00116 Cytochrome C oxidase subunit II, periplasmic domain DA391_16965 PF06481 COX Aromatic Rich Motif DA391_16970 PF00115 Cytochrome C and Quinol oxidase polypeptide I DA391_16975 PF00510 Cytochrome c oxidase subunit III DA391_16980 PF03626 Prokaryotic Cytochrome C oxidase subunit IV DA391_16985 PF01040 UbiA prenyltransferase family DA391_16990 PF07690 Major Facilitator Superfamily DA391_16995 PF04461 Protein of unknown function (DUF520) DA391_17000 PF08546 Ketopantoate reductase PanE/ApbA C terminal DA391_17000 PF02558 Ketopantoate reductase PanE/ApbA DA391_17005 PF01965 DJ-1/PfpI family DA391_17010 PF02926 THUMP domain DA391_17010 PF02568 Thiamine biosynthesis protein (ThiI) DA391_17015 PF02609 Exonuclease VII small subunit DA391_17020 PF00348 Polyprenyl synthetase DA391_17025 PF13292 1-deoxy-D-xylulose-5-phosphate synthase DA391_17025 PF02780 Transketolase, C-terminal domain DA391_17025 PF02779 Transketolase, pyrimidine binding domain DA391_17030 PF04608 Phosphatidylglycerophosphatase A DA391_17035 PF02769 AIR synthase related protein, C-terminal domain DA391_17035 PF00586 AIR synthase related protein, N-terminal domain DA391_17040 PF01029 NusB family DA391_17045 PF00885 6,7-dimethyl-8-ribityllumazine synthase DA391_17050 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region DA391_17050 PF01872 RibD C-terminal domain DA391_17055 PF03477 ATP cone domain DA391_17065 PF07549 SecD/SecF GG Motif DA391_17065 PF02355 Protein export membrane protein DA391_17070 PF13721 SecD export protein N-terminal TM region DA391_17070 PF07549 SecD/SecF GG Motif DA391_17070 PF02355 Protein export membrane protein DA391_17075 PF02699 Preprotein translocase subunit DA391_17080 PF01702 Queuine tRNA-ribosyltransferase DA391_17085 PF02547 Queuosine biosynthesis protein DA391_17095 PF04336 Acyl carrier protein phosphodiesterase DA391_17100 PF10417 C-terminal domain of 1-Cys peroxiredoxin DA391_17100 PF00578 AhpC/TSA family DA391_17115 PF02903 Alpha amylase, N-terminal ig-like domain DA391_17115 PF00128 Alpha amylase, catalytic domain DA391_17120 PF00324 Amino acid permease DA391_17125 PF05525 Branched-chain amino acid transport protein DA391_17130 PF12849 PBP superfamily domain DA391_17135 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DA391_17135 PF00989 PAS fold DA391_17135 PF11808 Phosphate regulon sensor protein PhoR DA391_17135 PF00512 His Kinase A (phospho-acceptor) domain DA391_17140 PF00486 Transcriptional regulatory protein, C terminal DA391_17140 PF00072 Response regulator receiver domain DA391_17145 PF12320 Type 5 capsule protein repressor C-terminal domain DA391_17145 PF00149 Calcineurin-like phosphoesterase DA391_17150 PF13476 AAA domain DA391_17155 PF00480 ROK family DA391_17160 PF04381 Putative exonuclease, RdgC DA391_17165 PF06865 Pyrimidine/purine nucleoside phosphorylase DA391_17170 PF01202 Shikimate kinase DA391_17185 PF08241 Methyltransferase domain DA391_17200 PF10091 Putative glucoamylase DA391_17200 PF06165 Glycosyltransferase family 36 DA391_17200 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain DA391_17205 PF07317 Flagellar regulator YcgR DA391_17205 PF07238 PilZ domain DA391_17210 PF00171 Aldehyde dehydrogenase family DA391_17215 PF01472 PUA domain DA391_17215 PF00696 Amino acid kinase family DA391_17220 PF07417 Sigma factor-binding transcriptional regulator Crl DA391_17230 PF00156 Phosphoribosyl transferase domain DA391_17235 PF01546 Peptidase family M20/M25/M40 DA391_17235 PF07687 Peptidase dimerisation domain DA391_17240 PF00817 impB/mucB/samB family DA391_17240 PF11799 impB/mucB/samB family C-terminal domain DA391_17240 PF11798 IMS family HHH motif DA391_17245 PF03009 Glycerophosphoryl diester phosphodiesterase family DA391_17250 PF04400 (Na+)-NQR maturation NqrM DA391_17255 PF02424 ApbE family DA391_17260 PF00111 2Fe-2S iron-sulfur cluster binding domain DA391_17260 PF00970 Oxidoreductase FAD-binding domain DA391_17260 PF00175 Oxidoreductase NAD-binding domain DA391_17265 PF02508 Rnf-Nqr subunit, membrane protein DA391_17270 PF02508 Rnf-Nqr subunit, membrane protein DA391_17275 PF04205 FMN-binding domain DA391_17280 PF03116 NQR2, RnfD, RnfE family DA391_17285 PF11973 NQRA C-terminal domain DA391_17285 PF05896 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) DA391_17290 PF03734 L,D-transpeptidase catalytic domain DA391_17295 PF13230 Glutamine amidotransferases class-II DA391_17300 PF13580 SIS domain DA391_17305 PF00441 Acyl-CoA dehydrogenase, C-terminal domain DA391_17305 PF09317 Domain of unknown function (DUF1974) DA391_17305 PF02771 Acyl-CoA dehydrogenase, N-terminal domain DA391_17310 PF18254 HMW1 domain 2 DA391_17310 PF18071 HMW1C N-terminal DA391_17315 PF05860 haemagglutination activity domain DA391_17320 PF08479 POTRA domain, ShlB-type DA391_17320 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB DA391_17325 PF01636 Phosphotransferase enzyme family DA391_17330 PF01008 Initiation factor 2 subunit family DA391_17335 PF03079 ARD/ARD' family DA391_17345 PF00596 Class II Aldolase and Adducin N-terminal domain DA391_17350 PF00155 Aminotransferase class I and II DA391_17355 PF00795 Carbon-nitrogen hydrolase DA391_17360 PF00266 Aminotransferase class-V DA391_17365 PF07690 Major Facilitator Superfamily DA391_17370 PF03591 AzlC protein DA391_17375 PF05437 Branched-chain amino acid transport protein (AzlD) DA391_17380 PF01047 MarR family DA391_17385 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion DA391_17385 PF00529 HlyD membrane-fusion protein of T1SS DA391_17390 PF07690 Major Facilitator Superfamily DA391_17395 PF00588 SpoU rRNA Methylase family DA391_17395 PF08032 RNA 2'-O ribose methyltransferase substrate binding DA391_17400 PF00085 Thioredoxin DA391_17410 PF00583 Acetyltransferase (GNAT) family DA391_17410 PF13380 CoA binding domain DA391_17410 PF13607 Succinyl-CoA ligase like flavodoxin domain DA391_17415 PF13091 PLD-like domain DA391_17455 PF00004 ATPase family associated with various cellular activities (AAA) DA391_17455 PF17871 AAA lid domain DA391_17455 PF02861 Clp amino terminal domain, pathogenicity island component DA391_17455 PF10431 C-terminal, D2-small domain, of ClpB protein DA391_17455 PF07724 AAA domain (Cdc48 subfamily) DA391_17465 PF01479 S4 domain DA391_17465 PF00849 RNA pseudouridylate synthase DA391_17475 PF13525 Outer membrane lipoprotein DA391_17480 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein DA391_17490 PF00800 Prephenate dehydratase DA391_17490 PF01817 Chorismate mutase type II DA391_17495 PF02153 Prephenate dehydrogenase DA391_17495 PF01817 Chorismate mutase type II DA391_17500 PF00793 DAHP synthetase I family DA391_17505 PF00072 Response regulator receiver domain DA391_17505 PF04397 LytTr DNA-binding domain DA391_17510 PF03605 Anaerobic c4-dicarboxylate membrane transporter DA391_17515 PF04338 Protein of unknown function, DUF481 DA391_17520 PF01245 Ribosomal protein L19 DA391_17525 PF01746 tRNA (Guanine-1)-methyltransferase DA391_17530 PF01782 RimM N-terminal domain DA391_17530 PF05239 PRC-barrel domain DA391_17535 PF00886 Ribosomal protein S16 DA391_17545 PF02978 Signal peptide binding domain DA391_17545 PF02881 SRP54-type protein, helical bundle domain DA391_17545 PF00448 SRP54-type protein, GTPase domain DA391_17550 PF01578 Cytochrome C assembly protein DA391_17555 PF01595 Cyclin M transmembrane N-terminal domain DA391_17555 PF00571 CBS domain DA391_17555 PF03471 Transporter associated domain DA391_17560 PF02664 S-Ribosylhomocysteinase (LuxS) DA391_17565 PF04262 Glutamate-cysteine ligase DA391_17570 PF09335 SNARE associated Golgi protein DA391_17575 PF13419 Haloacid dehalogenase-like hydrolase DA391_17600 PF02599 Global regulator protein family DA391_17605 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain DA391_17605 PF01411 tRNA synthetases class II (A) DA391_17605 PF02272 DHHA1 domain DA391_17610 PF02631 RecX family DA391_17615 PF00154 recA bacterial DNA recombination protein DA391_17620 PF02464 Competence-damaged protein DA391_17625 PF07690 Major Facilitator Superfamily DA391_17640 PF00370 FGGY family of carbohydrate kinases, N-terminal domain DA391_17640 PF02782 FGGY family of carbohydrate kinases, C-terminal domain DA391_17645 PF02779 Transketolase, pyrimidine binding domain DA391_17645 PF02780 Transketolase, C-terminal domain DA391_17650 PF00456 Transketolase, thiamine diphosphate binding domain DA391_17655 PF02653 Branched-chain amino acid transport system / permease component DA391_17660 PF00005 ABC transporter DA391_17685 PF02613 Nitrate reductase delta subunit DA391_17690 PF04976 DMSO reductase anchor subunit (DmsC) DA391_17695 PF12800 4Fe-4S binding domain DA391_17695 PF13247 4Fe-4S dicluster domain DA391_17700 PF00384 Molybdopterin oxidoreductase DA391_17700 PF04879 Molybdopterin oxidoreductase Fe4S4 domain DA391_17700 PF01568 Molydopterin dinucleotide binding domain DA391_17705 PF00465 Iron-containing alcohol dehydrogenase DA391_17710 PF00596 Class II Aldolase and Adducin N-terminal domain DA391_17715 PF07690 Major Facilitator Superfamily DA391_17720 PF07881 L-fucose isomerase, first N-terminal domain DA391_17720 PF02952 L-fucose isomerase, C-terminal domain DA391_17720 PF07882 L-fucose isomerase, second N-terminal domain DA391_17725 PF02782 FGGY family of carbohydrate kinases, C-terminal domain DA391_17725 PF00370 FGGY family of carbohydrate kinases, N-terminal domain DA391_17730 PF05025 RbsD / FucU transport protein family DA391_17735 PF08220 DeoR-like helix-turn-helix domain DA391_17735 PF00455 DeoR C terminal sensor domain DA391_17740 PF00596 Class II Aldolase and Adducin N-terminal domain DA391_17745 PF08220 DeoR-like helix-turn-helix domain DA391_17745 PF00455 DeoR C terminal sensor domain DA391_17755 PF00005 ABC transporter DA391_17760 PF02653 Branched-chain amino acid transport system / permease component DA391_17765 PF02653 Branched-chain amino acid transport system / permease component DA391_17770 PF01261 Xylose isomerase-like TIM barrel DA391_17775 PF00370 FGGY family of carbohydrate kinases, N-terminal domain DA391_17775 PF02782 FGGY family of carbohydrate kinases, C-terminal domain DA391_17780 PF05681 Fumarate hydratase (Fumerase) DA391_17780 PF05683 Fumarase C-terminus DA391_17785 PF13458 Periplasmic binding protein DA391_17790 PF02653 Branched-chain amino acid transport system / permease component DA391_17795 PF11862 Domain of unknown function (DUF3382) DA391_17795 PF02653 Branched-chain amino acid transport system / permease component DA391_17800 PF00005 ABC transporter DA391_17805 PF00005 ABC transporter DA391_17825 PF00795 Carbon-nitrogen hydrolase DA391_17830 PF04198 Putative sugar-binding domain DA391_17830 PF13936 Helix-turn-helix domain DA391_17835 PF03610 PTS system fructose IIA component DA391_17840 PF03830 PTS system sorbose subfamily IIB component DA391_17845 PF03609 PTS system sorbose-specific iic component DA391_17850 PF03613 PTS system mannose/fructose/sorbose family IID component DA391_17855 PF08240 Alcohol dehydrogenase GroES-like domain DA391_17855 PF00107 Zinc-binding dehydrogenase DA391_17860 PF01022 Bacterial regulatory protein, arsR family DA391_17865 PF00009 Elongation factor Tu GTP binding domain DA391_17865 PF03764 Elongation factor G, domain IV DA391_17865 PF00679 Elongation factor G C-terminus DA391_17865 PF14492 Elongation Factor G, domain II DA391_17865 PF03144 Elongation factor Tu domain 2 DA391_17880 PF01546 Peptidase family M20/M25/M40 DA391_17885 PF00005 ABC transporter DA391_17890 PF00528 Binding-protein-dependent transport system inner membrane component DA391_17895 PF00528 Binding-protein-dependent transport system inner membrane component DA391_17905 PF00291 Pyridoxal-phosphate dependent enzyme DA391_17910 PF02447 GntP family permease DA391_17915 PF03466 LysR substrate binding domain DA391_17915 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DA391_17925 PF00005 ABC transporter DA391_17925 PF08352 Oligopeptide/dipeptide transporter, C-terminal region DA391_17930 PF08352 Oligopeptide/dipeptide transporter, C-terminal region DA391_17930 PF00005 ABC transporter DA391_17940 PF00528 Binding-protein-dependent transport system inner membrane component DA391_17945 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle DA391_17950 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain DA391_17950 PF13378 Enolase C-terminal domain-like DA391_17955 PF00155 Aminotransferase class I and II DA391_17960 PF00497 Bacterial extracellular solute-binding proteins, family 3 DA391_17985 PF02801 Beta-ketoacyl synthase, C-terminal domain DA391_17985 PF00109 Beta-ketoacyl synthase, N-terminal domain DA391_17990 PF02321 Outer membrane efflux protein DA391_17995 PF00005 ABC transporter DA391_17995 PF02687 FtsX-like permease family DA391_17995 PF12704 MacB-like periplasmic core domain DA391_18000 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion DA391_18005 PF03412 Peptidase C39 family DA391_18005 PF00005 ABC transporter DA391_18005 PF00664 ABC transporter transmembrane region DA391_18030 PF00419 Fimbrial protein DA391_18035 PF00419 Fimbrial protein DA391_18050 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain DA391_18050 PF02753 Pili assembly chaperone PapD, C-terminal domain DA391_18055 PF13953 PapC C-terminal domain DA391_18055 PF00577 Outer membrane usher protein DA391_18055 PF13954 PapC N-terminal domain DA391_18065 PF00419 Fimbrial protein DA391_18080 PF07075 Protein of unknown function (DUF1343) DA391_18090 PF01915 Glycosyl hydrolase family 3 C-terminal domain DA391_18090 PF00933 Glycosyl hydrolase family 3 N terminal domain DA391_18095 PF01418 Helix-turn-helix domain, rpiR family DA391_18095 PF01380 SIS domain DA391_18100 PF13580 SIS domain DA391_18105 PF00367 phosphotransferase system, EIIB DA391_18105 PF02378 Phosphotransferase system, EIIC DA391_18115 PF00577 Outer membrane usher protein DA391_18115 PF13954 PapC N-terminal domain DA391_18115 PF13953 PapC C-terminal domain DA391_18120 PF02753 Pili assembly chaperone PapD, C-terminal domain DA391_18120 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain DA391_18125 PF02753 Pili assembly chaperone PapD, C-terminal domain DA391_18125 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain DA391_18135 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain DA391_18135 PF02753 Pili assembly chaperone PapD, C-terminal domain DA391_18150 PF01053 Cys/Met metabolism PLP-dependent enzyme DA391_18165 PF00488 MutS domain V DA391_18165 PF01624 MutS domain I DA391_18165 PF05192 MutS domain III DA391_18165 PF05188 MutS domain II DA391_18165 PF05190 MutS family domain IV DA391_18170 PF04539 Sigma-70 region 3 DA391_18170 PF04545 Sigma-70, region 4 DA391_18170 PF04542 Sigma-70 region 2 DA391_18170 PF00140 Sigma-70 factor, region 1.2 DA391_18175 PF01476 LysM domain DA391_18175 PF01551 Peptidase family M23 DA391_18185 PF01975 Survival protein SurE DA391_18190 PF01142 tRNA pseudouridine synthase D (TruD) DA391_18195 PF02542 YgbB family DA391_18200 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase DA391_18205 PF04977 Septum formation initiator DA391_18215 PF00497 Bacterial extracellular solute-binding proteins, family 3 DA391_18220 PF00528 Binding-protein-dependent transport system inner membrane component DA391_18225 PF00005 ABC transporter DA391_18230 PF12084 Protein of unknown function (DUF3561) DA391_18240 PF00009 Elongation factor Tu GTP binding domain DA391_18245 PF01507 Phosphoadenosine phosphosulfate reductase family DA391_18250 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases DA391_18250 PF14824 Sirohaem biosynthesis protein central DA391_18250 PF10414 Sirohaem synthase dimerisation region DA391_18255 PF04389 Peptidase family M28 DA391_18260 PF01507 Phosphoadenosine phosphosulfate reductase family DA391_18265 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain DA391_18265 PF01077 Nitrite and sulphite reductase 4Fe-4S domain DA391_18270 PF00258 Flavodoxin DA391_18270 PF00667 FAD binding domain DA391_18270 PF00175 Oxidoreductase NAD-binding domain DA391_18275 PF01242 6-pyruvoyl tetrahydropterin synthase DA391_18280 PF04055 Radical SAM superfamily DA391_18285 PF00080 Copper/zinc superoxide dismutase (SODC) DA391_18290 PF03952 Enolase, N-terminal domain DA391_18290 PF00113 Enolase, C-terminal TIM barrel domain DA391_18295 PF00117 Glutamine amidotransferase class-I DA391_18295 PF06418 CTP synthase N-terminus DA391_18300 PF03819 MazG nucleotide pyrophosphohydrolase domain DA391_18305 PF04607 Region found in RelA / SpoT proteins DA391_18305 PF02824 TGS domain DA391_18305 PF13291 ACT domain DA391_18310 PF01938 TRAM domain DA391_18310 PF05958 tRNA (Uracil-5-)-methyltransferase DA391_18315 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) DA391_18315 PF00512 His Kinase A (phospho-acceptor) domain DA391_18315 PF00072 Response regulator receiver domain DA391_18315 PF01627 Hpt domain DA391_18315 PF00672 HAMP domain DA391_18315 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DA391_18320 PF00595 PDZ domain DA391_18325 PF13286 Phosphohydrolase-associated domain DA391_18325 PF01966 HD domain DA391_18330 PF01048 Phosphorylase superfamily DA391_18335 PF01497 Periplasmic binding protein DA391_18340 PF03458 UPF0126 domain DA391_18355 PF01521 Iron-sulphur cluster biosynthesis DA391_18360 PF00654 Voltage gated chloride channel DA391_18365 PF00202 Aminotransferase class-III DA391_18370 PF01032 FecCD transport family DA391_18375 PF01497 Periplasmic binding protein DA391_18380 PF00005 ABC transporter DA391_18385 PF14812 Transmembrane domain of transglycosylase PBP1 at N-terminal DA391_18385 PF00912 Transglycosylase DA391_18385 PF00905 Penicillin binding protein transpeptidase domain DA391_18385 PF14814 Bifunctional transglycosylase second domain DA391_18390 PF00271 Helicase conserved C-terminal domain DA391_18390 PF04408 Helicase associated domain (HA2) DA391_18390 PF08482 ATP-dependent helicase C-terminal DA391_18390 PF00270 DEAD/DEAH box helicase DA391_18395 PF02834 LigT like Phosphoesterase DA391_18410 PF01258 Prokaryotic dksA/traR C4-type zinc finger DA391_18415 PF00749 tRNA synthetases class I (E and Q), catalytic domain DA391_18420 PF12627 Probable RNA and SrmB- binding site of polymerase A DA391_18420 PF12626 Polymerase A arginine-rich C-terminus DA391_18420 PF01743 Poly A polymerase head domain DA391_18425 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) DA391_18430 PF02548 Ketopantoate hydroxymethyltransferase DA391_18435 PF02569 Pantoate-beta-alanine ligase DA391_18440 PF02261 Aspartate decarboxylase DA391_18445 PF01522 Polysaccharide deacetylase DA391_18450 PF01061 ABC-2 type transporter DA391_18455 PF00005 ABC transporter DA391_18460 PF00484 Carbonic anhydrase DA391_18465 PF00156 Phosphoribosyl transferase domain DA391_18475 PF10518 TAT (twin-arginine translocation) pathway signal sequence DA391_18475 PF07732 Multicopper oxidase DA391_18475 PF07731 Multicopper oxidase DA391_18475 PF00394 Multicopper oxidase DA391_18480 PF09691 Type II secretion system pilotin lipoprotein (PulS_OutS) DA391_18485 PF17284 Spermidine synthase tetramerisation domain DA391_18490 PF02675 S-adenosylmethionine decarboxylase DA391_18495 PF00892 EamA-like transporter family DA391_18500 PF06062 Uncharacterised protein family (UPF0231) DA391_18505 PF06434 Aconitate hydratase 2 N-terminus DA391_18505 PF11791 Aconitate B N-terminal domain DA391_18505 PF00330 Aconitase family (aconitate hydratase) DA391_18510 PF00593 TonB dependent receptor DA391_18510 PF07715 TonB-dependent Receptor Plug Domain DA391_18520 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain DA391_18520 PF07992 Pyridine nucleotide-disulphide oxidoreductase DA391_18525 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) DA391_18525 PF02817 e3 binding domain DA391_18525 PF00364 Biotin-requiring enzyme DA391_18530 PF17831 Pyruvate dehydrogenase E1 component middle domain DA391_18530 PF00456 Transketolase, thiamine diphosphate binding domain DA391_18535 PF00392 Bacterial regulatory proteins, gntR family DA391_18535 PF07729 FCD domain DA391_18540 PF00324 Amino acid permease DA391_18545 PF07979 Intimin C-type lectin domain DA391_18545 PF02368 Bacterial Ig-like domain (group 2) DA391_18545 PF02369 Bacterial Ig-like domain (group 1) DA391_18545 PF11924 Inverse autotransporter, beta-domain DA391_18545 PF01476 LysM domain DA391_18550 PF17113 Regulatory signalling modulator protein AmpE DA391_18555 PF01510 N-acetylmuramoyl-L-alanine amidase DA391_18560 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain DA391_18560 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain DA391_18565 PF07963 Prokaryotic N-terminal methylation motif DA391_18570 PF00437 Type II/IV secretion system protein DA391_18570 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain DA391_18575 PF00482 Type II secretion system (T2SS), protein F DA391_18580 PF00478 IMP dehydrogenase / GMP reductase domain DA391_18590 PF01121 Dephospho-CoA kinase DA391_18595 PF07072 Cell division protein DA391_18600 PF03884 DNA gyrase inhibitor YacG DA391_18605 PF00293 NUDIX domain DA391_18610 PF02810 SEC-C motif DA391_18610 PF07517 SecA DEAD-like domain DA391_18610 PF01043 SecA preprotein cross-linking domain DA391_18610 PF07516 SecA Wing and Scaffold domain DA391_18615 PF06558 Secretion monitor precursor protein (SecM) DA391_18625 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase DA391_18630 PF12327 FtsZ family, C-terminal domain DA391_18630 PF00091 Tubulin/FtsZ family, GTPase domain DA391_18635 PF02491 SHS2 domain inserted in FTSA DA391_18640 PF03799 Cell division protein FtsQ DA391_18640 PF08478 POTRA domain, FtsQ-type DA391_18645 PF07478 D-ala D-ala ligase C-terminus DA391_18645 PF01820 D-ala D-ala ligase N-terminus DA391_18650 PF01225 Mur ligase family, catalytic domain DA391_18650 PF02875 Mur ligase family, glutamate ligase domain DA391_18650 PF08245 Mur ligase middle domain DA391_18655 PF03033 Glycosyltransferase family 28 N-terminal domain DA391_18655 PF04101 Glycosyltransferase family 28 C-terminal domain DA391_18660 PF01098 Cell cycle protein DA391_18665 PF02875 Mur ligase family, glutamate ligase domain DA391_18665 PF08245 Mur ligase middle domain DA391_18670 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 DA391_18670 PF00953 Glycosyl transferase family 4 DA391_18675 PF08245 Mur ligase middle domain DA391_18675 PF02875 Mur ligase family, glutamate ligase domain DA391_18675 PF01225 Mur ligase family, catalytic domain DA391_18680 PF02875 Mur ligase family, glutamate ligase domain DA391_18680 PF08245 Mur ligase middle domain DA391_18680 PF01225 Mur ligase family, catalytic domain DA391_18685 PF03717 Penicillin-binding Protein dimerisation domain DA391_18685 PF00905 Penicillin binding protein transpeptidase domain DA391_18690 PF04999 Cell division protein FtsL DA391_18695 PF01795 MraW methylase family DA391_18700 PF02381 MraZ protein, putative antitoxin-like DA391_18705 PF06610 L-alanine exporter DA391_18710 PF00356 Bacterial regulatory proteins, lacI family DA391_18710 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family DA391_18715 PF10369 Small subunit of acetolactate synthase DA391_18720 PF00205 Thiamine pyrophosphate enzyme, central domain DA391_18720 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain DA391_18720 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain DA391_18725 PF00501 AMP-binding enzyme DA391_18730 PF03466 LysR substrate binding domain DA391_18730 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DA391_18740 PF08502 LeuA allosteric (dimerisation) domain DA391_18740 PF00682 HMGL-like DA391_18745 PF00180 Isocitrate/isopropylmalate dehydrogenase DA391_18750 PF00330 Aconitase family (aconitate hydratase) DA391_18755 PF00694 Aconitase C-terminal domain DA391_18765 PF01212 Beta-eliminating lyase DA391_18770 PF03222 Tryptophan/tyrosine permease family DA391_18775 PF07690 Major Facilitator Superfamily DA391_18785 PF04055 Radical SAM superfamily DA391_18790 PF12793 Sugar transport-related sRNA regulator N-term DA391_18790 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle DA391_18800 PF00528 Binding-protein-dependent transport system inner membrane component DA391_18805 PF00005 ABC transporter DA391_18810 PF09335 SNARE associated Golgi protein DA391_18815 PF00136 DNA polymerase family B DA391_18815 PF03104 DNA polymerase family B, exonuclease domain DA391_18820 PF18337 RapA N-terminal Tudor like domain DA391_18820 PF12137 RNA polymerase recycling family C-terminal DA391_18820 PF18339 RapA N-terminal Tudor like domain 1 DA391_18820 PF00176 SNF2 family N-terminal domain DA391_18820 PF00271 Helicase conserved C-terminal domain DA391_18825 PF08021 Siderophore-interacting FAD-binding domain DA391_18825 PF04954 Siderophore-interacting protein DA391_18835 PF06276 Ferric iron reductase FhuF-like transporter DA391_18835 PF04183 IucA / IucC family DA391_18845 PF06276 Ferric iron reductase FhuF-like transporter DA391_18845 PF04183 IucA / IucC family DA391_18850 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) DA391_18855 PF07715 TonB-dependent Receptor Plug Domain DA391_18855 PF00593 TonB dependent receptor DA391_18860 PF00849 RNA pseudouridylate synthase DA391_18870 PF05099 Tellurite resistance protein TerB DA391_18870 PF00226 DnaJ domain DA391_18875 PF04453 LPS transport system D DA391_18875 PF03968 OstA-like protein DA391_18880 PF09312 SurA N-terminal domain DA391_18880 PF00639 PPIC-type PPIASE domain DA391_18885 PF04166 Pyridoxal phosphate biosynthetic protein PdxA DA391_18890 PF00398 Ribosomal RNA adenine dimethylase DA391_18895 PF04379 ApaG domain DA391_18900 PF00149 Calcineurin-like phosphoesterase DA391_18905 PF00186 Dihydrofolate reductase DA391_18910 PF12821 Threonine/Serine exporter, ThrE DA391_18915 PF06738 Putative threonine/serine exporter DA391_18920 PF01810 LysE type translocator DA391_18925 PF02142 MGS-like domain DA391_18925 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain DA391_18925 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain DA391_18930 PF00117 Glutamine amidotransferase class-I DA391_18930 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain DA391_18935 PF01113 Dihydrodipicolinate reductase, N-terminus DA391_18935 PF05173 Dihydrodipicolinate reductase, C-terminus DA391_18940 PF02401 LytB protein DA391_18945 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase DA391_18950 PF01252 Signal peptidase (SPase) II DA391_18955 PF00133 tRNA synthetases class I (I, L, M and V) DA391_18955 PF06827 Zinc finger found in FPG and IleRS DA391_18955 PF08264 Anticodon-binding domain of tRNA DA391_18960 PF06574 FAD synthetase DA391_18960 PF01687 Riboflavin kinase DA391_18975 PF01649 Ribosomal protein S20 DA391_18980 PF03466 LysR substrate binding domain DA391_18980 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DA391_18985 PF06965 Na+/H+ antiporter 1 DA391_18995 PF01556 DnaJ C terminal domain DA391_18995 PF00226 DnaJ domain DA391_18995 PF00684 DnaJ central domain DA391_19000 PF00012 Hsp70 protein DA391_19005 PF01184 GPR1/FUN34/yaaH family DA391_19015 PF00083 Sugar (and other) transporter DA391_19015 PF08946 Osmosensory transporter coiled coil DA391_19020 PF00994 Probable molybdopterin binding domain DA391_19025 PF00923 Transaldolase/Fructose-6-phosphate aldolase DA391_19035 PF03883 Peroxide stress protein YaaA DA391_19040 PF14821 Threonine synthase N terminus DA391_19040 PF00291 Pyridoxal-phosphate dependent enzyme DA391_19045 PF00288 GHMP kinases N terminal domain DA391_19045 PF08544 GHMP kinases C terminal DA391_19050 PF03447 Homoserine dehydrogenase, NAD binding domain DA391_19050 PF00742 Homoserine dehydrogenase DA391_19050 PF13840 ACT domain DA391_19050 PF01842 ACT domain DA391_19050 PF00696 Amino acid kinase family DA391_19055 PF08254 Threonine leader peptide DA391_19060 PF00486 Transcriptional regulatory protein, C terminal DA391_19060 PF00072 Response regulator receiver domain DA391_19065 PF05981 CreA protein DA391_19075 PF12833 Helix-turn-helix domain DA391_19075 PF06445 GyrI-like small molecule binding domain DA391_19080 PF00300 Histidine phosphatase superfamily (branch 1) DA391_19085 PF01931 Protein of unknown function DUF84 DA391_19090 PF01371 Trp repressor protein DA391_19095 PF01464 Transglycosylase SLT domain DA391_19095 PF14718 Soluble lytic murein transglycosylase L domain DA391_19100 PF00690 Cation transporter/ATPase, N-terminus DA391_19100 PF00689 Cation transporting ATPase, C-terminus DA391_19110 PF00990 Diguanylate cyclase, GGDEF domain DA391_19110 PF17152 Periplasmic sensor domain DA391_19115 PF00691 OmpA family DA391_19120 PF12848 ABC transporter DA391_19120 PF00005 ABC transporter DA391_19125 PF06379 L-rhamnose-proton symport protein (RhaT) DA391_19130 PF12833 Helix-turn-helix domain DA391_19130 PF02311 AraC-like ligand binding domain DA391_19135 PF02311 AraC-like ligand binding domain DA391_19135 PF12833 Helix-turn-helix domain DA391_19145 PF00370 FGGY family of carbohydrate kinases, N-terminal domain DA391_19145 PF02782 FGGY family of carbohydrate kinases, C-terminal domain DA391_19150 PF06134 L-rhamnose isomerase (RhaA) DA391_19155 PF00596 Class II Aldolase and Adducin N-terminal domain DA391_19160 PF00465 Iron-containing alcohol dehydrogenase DA391_19165 PF05336 L-rhamnose mutarotase DA391_19170 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DA391_19170 PF03466 LysR substrate binding domain DA391_19175 PF08240 Alcohol dehydrogenase GroES-like domain DA391_19175 PF00107 Zinc-binding dehydrogenase DA391_19180 PF13521 AAA domain DA391_19180 PF01381 Helix-turn-helix DA391_19185 PF18073 Rubredoxin metal binding domain DA391_19190 PF18429 Domain of unknown function (DUF5609) DA391_19195 PF10144 Bacterial virulence factor haemolysin DA391_19200 PF05016 ParE toxin of type II toxin-antitoxin system, parDE DA391_19210 PF01048 Phosphorylase superfamily DA391_19215 PF01676 Metalloenzyme superfamily DA391_19220 PF00591 Glycosyl transferase family, a/b domain DA391_19220 PF02885 Glycosyl transferase family, helical bundle domain DA391_19220 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain DA391_19225 PF01791 DeoC/LacD family aldolase DA391_19230 PF07662 Na+ dependent nucleoside transporter C-terminus DA391_19230 PF01773 Na+ dependent nucleoside transporter N-terminus DA391_19230 PF07670 Nucleoside recognition DA391_19235 PF01026 TatD related DNase DA391_19240 PF01734 Patatin-like phospholipase DA391_19245 PF07043 Protein of unknown function (DUF1328) DA391_19250 PF04972 BON domain DA391_19255 PF03144 Elongation factor Tu domain 2 DA391_19255 PF16658 Class II release factor RF3, C-terminal domain DA391_19255 PF00009 Elongation factor Tu GTP binding domain DA391_19260 PF00583 Acetyltransferase (GNAT) family DA391_19265 PF03603 DNA polymerase III psi subunit DA391_19270 PF08468 Methyltransferase small domain N-terminal DA391_19270 PF05175 Methyltransferase small domain DA391_19275 PF00248 Aldo/keto reductase family DA391_19280 PF03466 LysR substrate binding domain DA391_19280 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DA391_19300 PF07256 Protein of unknown function (DUF1435) DA391_19305 PF00990 Diguanylate cyclase, GGDEF domain DA391_19310 PF00158 Sigma-54 interaction domain DA391_19310 PF02954 Bacterial regulatory protein, Fis family DA391_19310 PF00989 PAS fold DA391_19320 PF07690 Major Facilitator Superfamily DA391_19335 PF02543 Carbamoyltransferase N-terminus DA391_19335 PF16861 Carbamoyltransferase C-terminus DA391_19345 PF00391 PEP-utilising enzyme, mobile domain DA391_19345 PF03610 PTS system fructose IIA component DA391_19345 PF05524 PEP-utilising enzyme, N-terminal DA391_19345 PF00381 PTS HPr component phosphorylation site DA391_19350 PF02734 DAK2 domain DA391_19355 PF02733 Dak1 domain DA391_19360 PF00465 Iron-containing alcohol dehydrogenase DA391_19365 PF00873 AcrB/AcrD/AcrF family DA391_19370 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion DA391_19380 PF13520 Amino acid permease DA391_19390 PF01075 Glycosyltransferase family 9 (heptosyltransferase) DA391_19395 PF00370 FGGY family of carbohydrate kinases, N-terminal domain DA391_19395 PF02782 FGGY family of carbohydrate kinases, C-terminal domain DA391_19400 PF00325 Bacterial regulatory proteins, crp family DA391_19400 PF04198 Putative sugar-binding domain DA391_19405 PF00005 ABC transporter DA391_19410 PF02653 Branched-chain amino acid transport system / permease component DA391_19415 PF02653 Branched-chain amino acid transport system / permease component DA391_19420 PF13407 Periplasmic binding protein domain DA391_19425 PF01791 DeoC/LacD family aldolase DA391_19430 PF03992 Antibiotic biosynthesis monooxygenase DA391_19435 PF10696 Protein of unknown function (DUF2501) DA391_19440 PF07804 HipA-like C-terminal domain DA391_19440 PF13657 HipA N-terminal domain DA391_19445 PF01381 Helix-turn-helix DA391_19450 PF04655 Aminoglycoside/hydroxyurea antibiotic resistance kinase DA391_19455 PF00916 Sulfate permease family DA391_19455 PF01740 STAS domain DA391_19460 PF00196 Bacterial regulatory proteins, luxR family DA391_19460 PF03472 Autoinducer binding domain DA391_19485 PF04606 Ogr/Delta-like zinc finger DA391_19515 PF17345 Family of unknown function (DUF5375) DA391_19525 PF13356 Arm DNA-binding domain DA391_19525 PF00589 Phage integrase family DA391_19535 PF03739 Lipopolysaccharide export system permease LptF/LptG DA391_19540 PF03739 Lipopolysaccharide export system permease LptF/LptG DA391_19545 PF00883 Cytosol aminopeptidase family, catalytic domain DA391_19545 PF02789 Cytosol aminopeptidase family, N-terminal domain DA391_19550 PF04364 DNA polymerase III chi subunit, HolC DA391_19555 PF08264 Anticodon-binding domain of tRNA DA391_19555 PF00133 tRNA synthetases class I (I, L, M and V) DA391_19555 PF10458 Valyl tRNA synthetase tRNA binding arm DA391_19560 PF00583 Acetyltransferase (GNAT) family DA391_19570 PF06877 Regulator of ribonuclease activity B DA391_19575 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain DA391_19575 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain DA391_19580 PF04074 YhcH/YjgK/YiaL DA391_19590 PF00528 Binding-protein-dependent transport system inner membrane component DA391_19600 PF00005 ABC transporter DA391_19600 PF08352 Oligopeptide/dipeptide transporter, C-terminal region DA391_19605 PF08352 Oligopeptide/dipeptide transporter, C-terminal region DA391_19605 PF00005 ABC transporter DA391_19620 PF03477 ATP cone domain DA391_19620 PF13597 Anaerobic ribonucleoside-triphosphate reductase DA391_19640 PF00392 Bacterial regulatory proteins, gntR family DA391_19640 PF07702 UTRA domain DA391_19645 PF06754 Phosphonate metabolism protein PhnG DA391_19650 PF05845 Bacterial phosphonate metabolism protein (PhnH) DA391_19655 PF05861 Bacterial phosphonate metabolism protein (PhnI) DA391_19660 PF06007 Phosphonate metabolism protein PhnJ DA391_19665 PF00005 ABC transporter DA391_19670 PF00005 ABC transporter DA391_19675 PF07969 Amidohydrolase family DA391_19685 PF12706 Beta-lactamase superfamily domain DA391_19690 PF13460 NAD(P)H-binding DA391_19705 PF03459 TOBE domain DA391_19705 PF00005 ABC transporter DA391_19705 PF17912 MalK OB fold domain DA391_19710 PF00528 Binding-protein-dependent transport system inner membrane component DA391_19720 PF13416 Bacterial extracellular solute-binding protein DA391_19730 PF07940 Heparinase II/III-like protein DA391_19730 PF05426 Alginate lyase DA391_19740 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain DA391_19740 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain DA391_19740 PF01276 Orn/Lys/Arg decarboxylase, major domain DA391_19745 PF13520 Amino acid permease DA391_19750 PF01541 GIY-YIG catalytic domain DA391_19755 PF13508 Acetyltransferase (GNAT) domain DA391_19775 PF03313 Serine dehydratase alpha chain DA391_19785 PF00296 Luciferase-like monooxygenase DA391_19790 PF12343 Cold shock protein DEAD box A DA391_19790 PF00271 Helicase conserved C-terminal domain DA391_19790 PF00270 DEAD/DEAH box helicase DA391_19790 PF03880 DbpA RNA binding domain DA391_19800 PF13181 Tetratricopeptide repeat DA391_19800 PF07719 Tetratricopeptide repeat DA391_19805 PF00013 KH domain DA391_19805 PF01138 3' exoribonuclease family, domain 1 DA391_19805 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain DA391_19805 PF00575 S1 RNA binding domain DA391_19805 PF03725 3' exoribonuclease family, domain 2 DA391_19810 PF00312 Ribosomal protein S15 DA391_19815 PF16198 tRNA pseudouridylate synthase B C-terminal domain DA391_19815 PF09157 Pseudouridine synthase II TruB, C-terminal DA391_19815 PF01509 TruB family pseudouridylate synthase (N terminal domain) DA391_19820 PF02033 Ribosome-binding factor A DA391_19825 PF03144 Elongation factor Tu domain 2 DA391_19825 PF11987 Translation-initiation factor 2 DA391_19825 PF08364 Bacterial translation initiation factor IF-2 associated region DA391_19825 PF04760 Translation initiation factor IF-2, N-terminal region DA391_19825 PF00009 Elongation factor Tu GTP binding domain DA391_19830 PF00575 S1 RNA binding domain DA391_19830 PF08529 NusA N-terminal domain DA391_19830 PF13184 NusA-like KH domain DA391_19835 PF02576 RimP N-terminal domain DA391_19835 PF17384 RimP C-terminal SH3 domain DA391_19850 PF03840 Preprotein translocase SecG subunit DA391_19855 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I DA391_19855 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain DA391_19855 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II DA391_19855 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III DA391_19860 PF00809 Pterin binding enzyme DA391_19865 PF17862 AAA+ lid domain DA391_19865 PF00004 ATPase family associated with various cellular activities (AAA) DA391_19865 PF01434 Peptidase family M41 DA391_19865 PF06480 FtsH Extracellular DA391_19870 PF01728 FtsJ-like methyltransferase DA391_19875 PF01985 CRS1 / YhbY (CRM) domain DA391_19880 PF03449 Transcription elongation factor, N-terminal DA391_19880 PF01272 Transcription elongation factor, GreA/GreB, C-term DA391_19885 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family DA391_19890 PF00072 Response regulator receiver domain DA391_19890 PF00486 Transcriptional regulatory protein, C terminal DA391_19895 PF00512 His Kinase A (phospho-acceptor) domain DA391_19895 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DA391_19895 PF00672 HAMP domain DA391_19900 PF01926 50S ribosome-binding GTPase DA391_19900 PF01018 GTP1/OBG DA391_19905 PF00892 EamA-like transporter family DA391_19910 PF01016 Ribosomal L27 protein DA391_19915 PF00829 Ribosomal prokaryotic L21 protein DA391_19920 PF00348 Polyprenyl synthetase DA391_19930 PF13693 Winged helix-turn-helix DNA-binding DA391_19935 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain DA391_19935 PF00056 lactate/malate dehydrogenase, NAD binding domain DA391_19940 PF01316 Arginine repressor, DNA binding domain DA391_19940 PF02863 Arginine repressor, C-terminal domain DA391_19950 PF01225 Mur ligase family, catalytic domain DA391_19950 PF02875 Mur ligase family, glutamate ligase domain DA391_19950 PF08245 Mur ligase middle domain DA391_19955 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain DA391_19960 PF02203 Tar ligand binding domain homologue DA391_19960 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DA391_19960 PF00672 HAMP domain DA391_19965 PF00719 Inorganic pyrophosphatase DA391_19970 PF06094 Gamma-glutamyl cyclotransferase, AIG2-like DA391_19975 PF04357 TamB, inner membrane protein subunit of TAM complex DA391_19980 PF07244 Surface antigen variable number repeat DA391_19980 PF17243 POTRA domain TamA domain 1 DA391_19980 PF01103 Surface antigen DA391_19985 PF01625 Peptide methionine sulfoxide reductase DA391_19990 PF01595 Cyclin M transmembrane N-terminal domain DA391_19990 PF03471 Transporter associated domain DA391_19990 PF00571 CBS domain DA391_19995 PF06526 Protein of unknown function (DUF1107) DA391_20000 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) DA391_20005 PF00459 Inositol monophosphatase family DA391_20010 PF00149 Calcineurin-like phosphoesterase DA391_20010 PF02872 5'-nucleotidase, C-terminal domain DA391_20015 PF04405 Domain of Unknown function (DUF542) DA391_20015 PF01814 Hemerythrin HHE cation binding domain DA391_20020 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase DA391_20020 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase DA391_20025 PF08525 Opacity-associated protein A N-terminal motif DA391_20025 PF04225 Opacity-associated protein A LysM-like domain DA391_20035 PF03948 Ribosomal protein L9, C-terminal domain DA391_20035 PF01281 Ribosomal protein L9, N-terminal domain DA391_20040 PF01084 Ribosomal protein S18 DA391_20045 PF00436 Single-strand binding protein family DA391_20050 PF01250 Ribosomal protein S6 DA391_20060 PF07338 Protein of unknown function (DUF1471) DA391_20065 PF00326 Prolyl oligopeptidase family DA391_20070 PF07338 Protein of unknown function (DUF1471) DA391_20200 PF04233 Phage Mu protein F like protein DA391_20210 PF03237 Terminase-like family DA391_20285 PF01471 Putative peptidoglycan binding domain DA391_20285 PF13401 AAA domain DA391_20325 PF06252 Protein of unknown function (DUF1018) DA391_20330 PF08765 Mor transcription activator family DA391_20345 PF00588 SpoU rRNA Methylase family DA391_20345 PF08032 RNA 2'-O ribose methyltransferase substrate binding DA391_20350 PF17876 Cold shock domain DA391_20350 PF08461 Ribonuclease R winged-helix domain DA391_20350 PF08206 Ribonuclease B OB domain DA391_20350 PF00575 S1 RNA binding domain DA391_20350 PF00773 RNB domain DA391_20355 PF02082 Transcriptional regulator DA391_20360 PF00709 Adenylosuccinate synthetase DA391_20365 PF09838 Uncharacterized protein conserved in bacteria (DUF2065) DA391_20370 PF01145 SPFH domain / Band 7 family DA391_20375 PF01145 SPFH domain / Band 7 family DA391_20375 PF12221 Bacterial membrane protein N terminal DA391_20380 PF01926 50S ribosome-binding GTPase DA391_20380 PF13167 GTP-binding GTPase N-terminal DA391_20380 PF16360 GTP-binding GTPase Middle Region DA391_20385 PF17209 Hfq protein DA391_20395 PF01119 DNA mismatch repair protein, C-terminal domain DA391_20395 PF08676 MutL C terminal dimerisation domain DA391_20400 PF01520 N-acetylmuramoyl-L-alanine amidase DA391_20405 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE DA391_20410 PF01256 Carbohydrate kinase DA391_20410 PF03853 YjeF-related protein N-terminus DA391_20415 PF08331 Domain of unknown function (DUF1730) DA391_20440 PF00929 Exonuclease DA391_20445 PF03193 RsgA GTPase DA391_20450 PF02666 Phosphatidylserine decarboxylase DA391_20455 PF12795 Mechanosensitive ion channel porin domain DA391_20455 PF00924 Mechanosensitive ion channel DA391_20455 PF12794 Mechanosensitive ion channel inner membrane domain 1 DA391_20460 PF00152 tRNA synthetases class II (D, K and N) DA391_20465 PF02910 Fumarate reductase flavoprotein C-term DA391_20465 PF00890 FAD binding domain DA391_20470 PF13183 4Fe-4S dicluster domain DA391_20470 PF13085 2Fe-2S iron-sulfur cluster binding domain DA391_20475 PF02300 Fumarate reductase subunit C DA391_20480 PF02313 Fumarate reductase subunit D DA391_20485 PF08212 Lipocalin-like domain DA391_20500 PF00893 Small Multidrug Resistance protein DA391_20505 PF08085 Entericidin EcnA/B family DA391_20510 PF01132 Elongation factor P (EF-P) OB domain DA391_20510 PF08207 Elongation factor P (EF-P) KOW-like domain DA391_20510 PF09285 Elongation factor P, C-terminal DA391_20515 PF04055 Radical SAM superfamily DA391_20520 PF13698 Domain of unknown function (DUF4156) DA391_20525 PF00118 TCP-1/cpn60 chaperonin family DA391_20530 PF00166 Chaperonin 10 Kd subunit DA391_20535 PF04186 FxsA cytoplasmic membrane protein DA391_20540 PF10415 Fumarase C C-terminus DA391_20540 PF00206 Lyase DA391_20545 PF03605 Anaerobic c4-dicarboxylate membrane transporter DA391_20550 PF03091 CutA1 divalent ion tolerance protein DA391_20555 PF02683 Cytochrome C biogenesis protein transmembrane region DA391_20555 PF11412 Disulphide bond corrector protein DsbC DA391_20560 PF04879 Molybdopterin oxidoreductase Fe4S4 domain DA391_20560 PF00384 Molybdopterin oxidoreductase DA391_20560 PF01568 Molydopterin dinucleotide binding domain DA391_20565 PF07992 Pyridine nucleotide-disulphide oxidoreductase DA391_20565 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster DA391_20565 PF13247 4Fe-4S dicluster domain DA391_20570 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster DA391_20570 PF07992 Pyridine nucleotide-disulphide oxidoreductase DA391_20570 PF13247 4Fe-4S dicluster domain DA391_20575 PF07690 Major Facilitator Superfamily DA391_20580 PF02595 Glycerate kinase family DA391_20585 PF08666 SAF domain DA391_20585 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus DA391_20590 PF05651 Putative sugar diacid recognition DA391_20590 PF17853 GGDEF-like domain DA391_20590 PF13556 PucR C-terminal helix-turn-helix domain DA391_20595 PF02595 Glycerate kinase family DA391_20600 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase DA391_20600 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase DA391_20605 PF03328 HpcH/HpaI aldolase/citrate lyase family DA391_20625 PF00175 Oxidoreductase NAD-binding domain DA391_20625 PF00111 2Fe-2S iron-sulfur cluster binding domain DA391_20625 PF00970 Oxidoreductase FAD-binding domain DA391_20630 PF00483 Nucleotidyl transferase DA391_20635 PF16363 GDP-mannose 4,6 dehydratase DA391_20640 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family DA391_20645 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain DA391_20645 PF00205 Thiamine pyrophosphate enzyme, central domain DA391_20645 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain DA391_20660 PF00535 Glycosyl transferase family 2 DA391_20675 PF10609 NUBPL iron-transfer P-loop NTPase DA391_20680 PF00535 Glycosyl transferase family 2 DA391_20680 PF07238 PilZ domain DA391_20680 PF03552 Cellulose synthase DA391_20685 PF03170 Bacterial cellulose synthase subunit DA391_20690 PF05420 Cellulose synthase operon protein C C-terminus (BCSC_C) DA391_20690 PF13181 Tetratricopeptide repeat DA391_20700 PF01270 Glycosyl hydrolases family 8 DA391_20705 PF04055 Radical SAM superfamily DA391_20710 PF06228 Haem utilisation ChuX/HutX DA391_20715 PF13460 NAD(P)H-binding DA391_20720 PF10636 Hemin uptake protein hemP DA391_20725 PF07715 TonB-dependent Receptor Plug Domain DA391_20725 PF00593 TonB dependent receptor DA391_20730 PF05171 Haemin-degrading HemS.ChuX domain DA391_20735 PF01497 Periplasmic binding protein DA391_20740 PF01032 FecCD transport family DA391_20745 PF00005 ABC transporter DA391_20750 PF00392 Bacterial regulatory proteins, gntR family DA391_20750 PF00155 Aminotransferase class I and II DA391_20760 PF00593 TonB dependent receptor DA391_20760 PF07715 TonB-dependent Receptor Plug Domain DA391_20765 PF12794 Mechanosensitive ion channel inner membrane domain 1 DA391_20765 PF12795 Mechanosensitive ion channel porin domain DA391_20765 PF00924 Mechanosensitive ion channel DA391_20795 PF07720 Tetratricopeptide repeat DA391_20800 PF01312 FlhB HrpN YscU SpaS Family DA391_20805 PF01311 Bacterial export proteins, family 1 DA391_20810 PF01313 Bacterial export proteins, family 3 DA391_20815 PF00813 FliP family DA391_20835 PF02874 ATP synthase alpha/beta family, beta-barrel domain DA391_20835 PF18269 T3SS EscN ATPase C-terminal domain DA391_20835 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain DA391_20845 PF00771 FHIPEP family DA391_20850 PF07201 HrpJ-like domain DA391_20860 PF12833 Helix-turn-helix domain DA391_20880 PF01514 Secretory protein of YscJ/FliF family DA391_20900 PF01464 Transglycosylase SLT domain DA391_20915 PF00196 Bacterial regulatory proteins, luxR family DA391_20915 PF00072 Response regulator receiver domain DA391_20920 PF00672 HAMP domain DA391_20920 PF00512 His Kinase A (phospho-acceptor) domain DA391_20920 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DA391_20955 PF00263 Bacterial type II and III secretion system protein DA391_20955 PF03958 Bacterial type II/III secretion system short domain DA391_20960 PF00437 Type II/IV secretion system protein DA391_20965 PF00482 Type II secretion system (T2SS), protein F DA391_20970 PF07963 Prokaryotic N-terminal methylation motif DA391_20970 PF08334 Type II secretion system (T2SS), protein G DA391_20975 PF07963 Prokaryotic N-terminal methylation motif DA391_20980 PF07963 Prokaryotic N-terminal methylation motif DA391_20980 PF02501 Type II secretion system (T2SS), protein I DA391_20985 PF11612 Type II secretion system (T2SS), protein J DA391_20985 PF07963 Prokaryotic N-terminal methylation motif DA391_20990 PF03934 Type II secretion system (T2SS), protein K DA391_21005 PF06750 Bacterial Peptidase A24 N-terminal domain DA391_21005 PF01478 Type IV leader peptidase family DA391_21015 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading DA391_21015 PF18416 N-acetylglucosamine binding protein domain 2 DA391_21025 PF00675 Insulinase (Peptidase family M16) DA391_21025 PF05193 Peptidase M16 inactive domain DA391_21030 PF06472 ABC transporter transmembrane region 2 DA391_21030 PF00005 ABC transporter DA391_21035 PF07715 TonB-dependent Receptor Plug Domain DA391_21040 PF04773 FecR protein DA391_21040 PF16220 Domain of unknown function (DUF4880) DA391_21045 PF08281 Sigma-70, region 4 DA391_21045 PF04542 Sigma-70 region 2 DA391_21060 PF01381 Helix-turn-helix DA391_21065 PF01206 Sulfurtransferase TusA DA391_21070 PF04143 Sulphur transport DA391_21075 PF01312 FlhB HrpN YscU SpaS Family DA391_21080 PF01311 Bacterial export proteins, family 1 DA391_21085 PF01313 Bacterial export proteins, family 3 DA391_21090 PF00813 FliP family DA391_21110 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain DA391_21110 PF18269 T3SS EscN ATPase C-terminal domain DA391_21115 PF00771 FHIPEP family DA391_21125 PF07201 HrpJ-like domain DA391_21140 PF01514 Secretory protein of YscJ/FliF family DA391_21160 PF14525 AraC-binding-like domain DA391_21160 PF12833 Helix-turn-helix domain DA391_21180 PF05802 Enterobacterial EspB protein DA391_21185 PF04888 Secretion system effector C (SseC) like family DA391_21195 PF03433 EspA-like secreted protein DA391_21225 PF01627 Hpt domain DA391_21225 PF00072 Response regulator receiver domain DA391_21225 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) DA391_21225 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DA391_21225 PF00672 HAMP domain DA391_21225 PF00512 His Kinase A (phospho-acceptor) domain DA391_21230 PF00072 Response regulator receiver domain DA391_21230 PF00196 Bacterial regulatory proteins, luxR family DA391_21235 PF00375 Sodium:dicarboxylate symporter family DA391_21240 PF13193 AMP-binding enzyme C-terminal domain DA391_21240 PF00501 AMP-binding enzyme DA391_21240 PF16177 Acetyl-coenzyme A synthetase N-terminus DA391_21245 PF04341 Protein of unknown function, DUF485 DA391_21250 PF00474 Sodium:solute symporter family DA391_21300 PF01808 AICARFT/IMPCHase bienzyme DA391_21300 PF02142 MGS-like domain DA391_21305 PF02843 Phosphoribosylglycinamide synthetase, C domain DA391_21305 PF02844 Phosphoribosylglycinamide synthetase, N domain DA391_21305 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain DA391_21310 PF07356 Protein of unknown function (DUF1481) DA391_21315 PF00216 Bacterial DNA-binding protein DA391_21320 PF04222 Protein of unknown function (DUF416) DA391_21325 PF04493 Endonuclease V DA391_21330 PF01208 Uroporphyrinogen decarboxylase (URO-D) DA391_21335 PF00293 NUDIX domain DA391_21335 PF09297 NADH pyrophosphatase zinc ribbon domain DA391_21340 PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ DA391_21345 PF01964 Radical SAM ThiC family DA391_21345 PF13667 ThiC-associated domain DA391_21350 PF02581 Thiamine monophosphate synthase DA391_21355 PF00899 ThiF family DA391_21360 PF02597 ThiS family DA391_21365 PF05690 Thiazole biosynthesis protein ThiG DA391_21370 PF04055 Radical SAM superfamily DA391_21370 PF06968 Biotin and Thiamin Synthesis associated domain DA391_21375 PF04983 RNA polymerase Rpb1, domain 3 DA391_21375 PF04997 RNA polymerase Rpb1, domain 1 DA391_21375 PF04998 RNA polymerase Rpb1, domain 5 DA391_21375 PF05000 RNA polymerase Rpb1, domain 4 DA391_21375 PF00623 RNA polymerase Rpb1, domain 2 DA391_21380 PF04563 RNA polymerase beta subunit DA391_21380 PF04561 RNA polymerase Rpb2, domain 2 DA391_21380 PF04560 RNA polymerase Rpb2, domain 7 DA391_21380 PF00562 RNA polymerase Rpb2, domain 6 DA391_21380 PF10385 RNA polymerase beta subunit external 1 domain DA391_21380 PF04565 RNA polymerase Rpb2, domain 3 DA391_21385 PF16320 Ribosomal protein L7/L12 dimerisation domain DA391_21385 PF00542 Ribosomal protein L7/L12 C-terminal domain DA391_21390 PF00466 Ribosomal protein L10 DA391_21395 PF00687 Ribosomal protein L1p/L10e family DA391_21400 PF03946 Ribosomal protein L11, N-terminal domain DA391_21400 PF00298 Ribosomal protein L11, RNA binding domain DA391_21405 PF02357 Transcription termination factor nusG DA391_21405 PF00467 KOW motif DA391_21410 PF00584 SecE/Sec61-gamma subunits of protein translocation complex DA391_21415 PF03143 Elongation factor Tu C-terminal domain DA391_21415 PF03144 Elongation factor Tu domain 2 DA391_21415 PF00009 Elongation factor Tu GTP binding domain DA391_21440 PF13673 Acetyltransferase (GNAT) domain DA391_21445 PF00485 Phosphoribulokinase / Uridine kinase family DA391_21450 PF03099 Biotin/lipoate A/B protein ligase family DA391_21450 PF02237 Biotin protein ligase C terminal domain DA391_21450 PF08279 HTH domain DA391_21455 PF01565 FAD binding domain DA391_21455 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain DA391_21485 PF12724 Flavodoxin domain DA391_21490 PF02386 Cation transport protein DA391_21495 PF09186 Domain of unknown function (DUF1949) DA391_21495 PF01205 Uncharacterized protein family UPF0029 DA391_21500 PF00557 Metallopeptidase family M24 DA391_21505 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain DA391_21505 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain DA391_21505 PF00378 Enoyl-CoA hydratase/isomerase DA391_21510 PF02803 Thiolase, C-terminal domain DA391_21510 PF00108 Thiolase, N-terminal domain DA391_21515 PF00970 Oxidoreductase FAD-binding domain DA391_21515 PF00175 Oxidoreductase NAD-binding domain DA391_21520 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase DA391_21525 PF02357 Transcription termination factor nusG DA391_21530 PF00490 Delta-aminolevulinic acid dehydratase DA391_21535 PF01026 TatD related DNase DA391_21540 PF00902 Sec-independent protein translocase protein (TatC) DA391_21550 PF02416 mttA/Hcf106 family DA391_21555 PF03109 ABC1 family DA391_21560 PF02036 SCP-2 sterol transfer family DA391_21565 PF01209 ubiE/COQ5 methyltransferase family DA391_21570 PF02646 RmuC family DA391_21575 PF09335 SNARE associated Golgi protein DA391_21580 PF02554 Carbon starvation protein CstA DA391_21580 PF13722 5TM C-terminal transporter carbon starvation CstA DA391_21590 PF01048 Phosphorylase superfamily DA391_21595 PF01738 Dienelactone hydrolase family DA391_21600 PF08267 Cobalamin-independent synthase, N-terminal domain DA391_21600 PF01717 Cobalamin-independent synthase, Catalytic domain DA391_21605 PF03466 LysR substrate binding domain DA391_21605 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DA391_21610 PF00892 EamA-like transporter family DA391_21615 PF03547 Membrane transport protein DA391_21620 PF03009 Glycerophosphoryl diester phosphodiesterase family DA391_21625 PF17912 MalK OB fold domain DA391_21625 PF00005 ABC transporter DA391_21630 PF00528 Binding-protein-dependent transport system inner membrane component DA391_21635 PF00528 Binding-protein-dependent transport system inner membrane component DA391_21640 PF13416 Bacterial extracellular solute-binding protein DA391_21675 PF00005 ABC transporter DA391_21680 PF00005 ABC transporter DA391_21680 PF12399 Branched-chain amino acid ATP-binding cassette transporter DA391_21685 PF11862 Domain of unknown function (DUF3382) DA391_21685 PF02653 Branched-chain amino acid transport system / permease component DA391_21690 PF02653 Branched-chain amino acid transport system / permease component DA391_21695 PF13458 Periplasmic binding protein DA391_21700 PF12568 Acetyltransferase (GNAT) domain, PanZ DA391_21705 PF00140 Sigma-70 factor, region 1.2 DA391_21705 PF04542 Sigma-70 region 2 DA391_21705 PF04545 Sigma-70, region 4 DA391_21715 PF02687 FtsX-like permease family DA391_21715 PF18075 FtsX extracellular domain DA391_21720 PF00005 ABC transporter DA391_21725 PF00448 SRP54-type protein, GTPase domain DA391_21725 PF00448 SRP54-type protein, GTPase domain DA391_21725 PF02881 SRP54-type protein, helical bundle domain DA391_21725 PF02881 SRP54-type protein, helical bundle domain DA391_21735 PF06611 Protein of unknown function (DUF1145) DA391_21750 PF07947 YhhN family DA391_21755 PF00403 Heavy-metal-associated domain DA391_21760 PF01206 Sulfurtransferase TusA DA391_21765 PF02592 Putative vitamin uptake transporter DA391_21770 PF08786 DcrB DA391_21775 PF02754 Cysteine-rich domain DA391_21775 PF13183 4Fe-4S dicluster domain DA391_21780 PF00890 FAD binding domain DA391_21785 PF01266 FAD dependent oxidoreductase DA391_21785 PF04324 BFD-like [2Fe-2S] binding domain DA391_21790 PF07690 Major Facilitator Superfamily DA391_21795 PF03009 Glycerophosphoryl diester phosphodiesterase family DA391_21805 PF12146 Serine aminopeptidase, S33 DA391_21810 PF01810 LysE type translocator DA391_21815 PF01810 LysE type translocator DA391_21820 PF00271 Helicase conserved C-terminal domain DA391_21820 PF00570 HRDC domain DA391_21820 PF09382 RQC domain DA391_21820 PF16124 RecQ zinc-binding DA391_21820 PF00270 DEAD/DEAH box helicase DA391_21825 PF02253 Phospholipase A1 DA391_21830 PF03061 Thioesterase superfamily DA391_21835 PF00892 EamA-like transporter family DA391_21840 PF01544 CorA-like Mg2+ transporter protein DA391_21850 PF09370 Phosphoenolpyruvate hydrolase-like DA391_21865 PF13361 UvrD-like helicase C-terminal domain DA391_21865 PF00580 UvrD/REP helicase N-terminal domain DA391_21870 PF13419 Haloacid dehalogenase-like hydrolase DA391_21875 PF00589 Phage integrase family DA391_21875 PF02899 Phage integrase, N-terminal SAM-like domain DA391_21880 PF04340 Protein of unknown function, DUF484 DA391_21885 PF01678 Diaminopimelate epimerase DA391_21890 PF13627 Prokaryotic lipoprotein-attachment site DA391_21895 PF01491 Frataxin-like domain DA391_21900 PF12633 Adenylate cyclase NT domain DA391_21900 PF01295 Adenylate cyclase, class-I DA391_21905 PF03900 Porphobilinogen deaminase, C-terminal domain DA391_21905 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain DA391_21910 PF02602 Uroporphyrinogen-III synthase HemD DA391_21915 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase DA391_21920 PF07219 HemY protein N-terminus DA391_21920 PF07719 Tetratricopeptide repeat DA391_21945 PF00324 Amino acid permease DA391_21950 PF03808 Glycosyl transferase WecB/TagA/CpsF family DA391_21955 PF06899 WzyE protein, O-antigen assembly polymerase DA391_21960 PF07429 4-alpha-L-fucosyltransferase glycosyl transferase group 56 DA391_21965 PF01943 Polysaccharide biosynthesis protein DA391_21970 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family DA391_21980 PF00483 Nucleotidyl transferase DA391_21985 PF16363 GDP-mannose 4,6 dehydratase DA391_21990 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain DA391_21990 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain DA391_21990 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain DA391_21995 PF02350 UDP-N-acetylglucosamine 2-epimerase DA391_22000 PF02706 Chain length determinant protein DA391_22005 PF00953 Glycosyl transferase family 4 DA391_22010 PF07497 Rho termination factor, RNA-binding domain DA391_22010 PF07498 Rho termination factor, N-terminal domain DA391_22010 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain DA391_22015 PF00085 Thioredoxin DA391_22020 PF00270 DEAD/DEAH box helicase DA391_22020 PF00271 Helicase conserved C-terminal domain DA391_22025 PF02541 Ppx/GppA phosphatase family DA391_22030 PF00295 Glycosyl hydrolases family 28 DA391_22035 PF00580 UvrD/REP helicase N-terminal domain DA391_22035 PF13361 UvrD-like helicase C-terminal domain DA391_22050 PF02753 Pili assembly chaperone PapD, C-terminal domain DA391_22050 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain DA391_22055 PF13953 PapC C-terminal domain DA391_22055 PF13954 PapC N-terminal domain DA391_22055 PF00577 Outer membrane usher protein DA391_22065 PF02753 Pili assembly chaperone PapD, C-terminal domain DA391_22065 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain DA391_22070 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain DA391_22070 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain DA391_22075 PF03466 LysR substrate binding domain DA391_22075 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DA391_22085 PF00585 C-terminal regulatory domain of Threonine dehydratase DA391_22085 PF00291 Pyridoxal-phosphate dependent enzyme DA391_22090 PF00920 Dehydratase family DA391_22095 PF01063 Amino-transferase class IV DA391_22105 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain DA391_22105 PF00205 Thiamine pyrophosphate enzyme, central domain DA391_22105 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain DA391_22110 PF08046 IlvGEDA operon leader peptide DA391_22115 PF01078 Magnesium chelatase, subunit ChlI DA391_22115 PF13335 Magnesium chelatase, subunit ChlI C-terminal DA391_22120 PF04219 Protein of unknown function, DUF DA391_22125 PF03466 LysR substrate binding domain DA391_22125 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DA391_22130 PF02653 Branched-chain amino acid transport system / permease component DA391_22135 PF02653 Branched-chain amino acid transport system / permease component DA391_22140 PF00005 ABC transporter DA391_22145 PF13407 Periplasmic binding protein domain DA391_22190 PF01177 Asp/Glu/Hydantoin racemase DA391_22195 PF00593 TonB dependent receptor DA391_22195 PF07715 TonB-dependent Receptor Plug Domain DA391_22200 PF05958 tRNA (Uracil-5-)-methyltransferase DA391_22205 PF07226 Protein of unknown function (DUF1422) DA391_22210 PF00440 Bacterial regulatory proteins, tetR family DA391_22215 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain DA391_22215 PF07992 Pyridine nucleotide-disulphide oxidoreductase DA391_22220 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DA391_22220 PF03466 LysR substrate binding domain DA391_22225 PF00462 Glutaredoxin DA391_22225 PF08534 Redoxin DA391_22230 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain DA391_22230 PF07992 Pyridine nucleotide-disulphide oxidoreductase DA391_22240 PF00529 HlyD membrane-fusion protein of T1SS DA391_22245 PF00005 ABC transporter DA391_22245 PF00664 ABC transporter transmembrane region DA391_22255 PF00593 TonB dependent receptor DA391_22255 PF07715 TonB-dependent Receptor Plug Domain DA391_22260 PF14698 Argininosuccinate lyase C-terminal DA391_22260 PF00206 Lyase DA391_22265 PF00696 Amino acid kinase family DA391_22270 PF02774 Semialdehyde dehydrogenase, dimerisation domain DA391_22270 PF01118 Semialdehyde dehydrogenase, NAD binding domain DA391_22275 PF07687 Peptidase dimerisation domain DA391_22275 PF01546 Peptidase family M20/M25/M40 DA391_22280 PF00311 Phosphoenolpyruvate carboxylase DA391_22285 PF00175 Oxidoreductase NAD-binding domain DA391_22285 PF00970 Oxidoreductase FAD-binding domain DA391_22290 PF07690 Major Facilitator Superfamily DA391_22295 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded DA391_22300 PF00370 FGGY family of carbohydrate kinases, N-terminal domain DA391_22300 PF02782 FGGY family of carbohydrate kinases, C-terminal domain DA391_22305 PF00230 Major intrinsic protein DA391_22315 PF06005 Cell division protein ZapB DA391_22320 PF03737 Aldolase/RraA DA391_22325 PF01040 UbiA prenyltransferase family DA391_22330 PF07724 AAA domain (Cdc48 subfamily) DA391_22330 PF00004 ATPase family associated with various cellular activities (AAA) DA391_22330 PF10431 C-terminal, D2-small domain, of ClpB protein DA391_22335 PF00227 Proteasome subunit DA391_22340 PF05036 Sporulation related domain DA391_22345 PF00356 Bacterial regulatory proteins, lacI family DA391_22350 PF00270 DEAD/DEAH box helicase DA391_22350 PF18074 Primosomal protein N C-terminal domain DA391_22350 PF17764 3′ DNA-binding domain (3′BD) DA391_22350 PF00271 Helicase conserved C-terminal domain DA391_22350 PF18319 PriA DNA helicase Cys-rich region (CRR) domain DA391_22360 PF01197 Ribosomal protein L31 DA391_22365 PF01340 Met Apo-repressor, MetJ DA391_22370 PF01053 Cys/Met metabolism PLP-dependent enzyme DA391_22375 PF00742 Homoserine dehydrogenase DA391_22375 PF00696 Amino acid kinase family DA391_22375 PF03447 Homoserine dehydrogenase, NAD binding domain DA391_22380 PF02219 Methylenetetrahydrofolate reductase DA391_22385 PF05656 Protein of unknown function (DUF805) DA391_22390 PF07305 Protein of unknown function (DUF1454) DA391_22395 PF00121 Triosephosphate isomerase DA391_22410 PF00365 Phosphofructokinase DA391_22415 PF01545 Cation efflux family DA391_22415 PF16916 Dimerisation domain of Zinc Transporter DA391_22420 PF07813 LTXXQ motif family protein DA391_22425 PF00486 Transcriptional regulatory protein, C terminal DA391_22425 PF00072 Response regulator receiver domain DA391_22430 PF16527 Two-component sensor protein CpxA, periplasmic domain DA391_22430 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DA391_22430 PF00512 His Kinase A (phospho-acceptor) domain DA391_22430 PF00672 HAMP domain DA391_22435 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain DA391_22435 PF12833 Helix-turn-helix domain DA391_22435 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain DA391_22435 PF02805 Metal binding domain of Ada DA391_22440 PF00588 SpoU rRNA Methylase family DA391_22445 PF00132 Bacterial transferase hexapeptide (six repeats) DA391_22445 PF06426 Serine acetyltransferase, N-terminal DA391_22450 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus DA391_22450 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus DA391_22455 PF02556 Preprotein translocase subunit SecB DA391_22460 PF00462 Glutaredoxin DA391_22465 PF00581 Rhodanese-like domain DA391_22470 PF01676 Metalloenzyme superfamily DA391_22470 PF06415 BPG-independent PGAM N-terminus (iPGM_N) DA391_22475 PF01551 Peptidase family M23 DA391_22480 PF04748 Divergent polysaccharide deacetylase DA391_22485 PF00107 Zinc-binding dehydrogenase DA391_22485 PF08240 Alcohol dehydrogenase GroES-like domain DA391_22490 PF00155 Aminotransferase class I and II DA391_22495 PF01370 NAD dependent epimerase/dehydratase family DA391_22500 PF01075 Glycosyltransferase family 9 (heptosyltransferase) DA391_22505 PF01075 Glycosyltransferase family 9 (heptosyltransferase) DA391_22510 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) DA391_22515 PF00535 Glycosyl transferase family 2 DA391_22520 PF01467 Cytidylyltransferase-like DA391_22525 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain DA391_22525 PF06827 Zinc finger found in FPG and IleRS DA391_22525 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain DA391_22530 PF00471 Ribosomal protein L33 DA391_22535 PF00830 Ribosomal L28 family DA391_22545 PF04002 RadC-like JAB domain DA391_22550 PF04127 DNA / pantothenate metabolism flavoprotein DA391_22550 PF02441 Flavoprotein DA391_22555 PF00692 dUTPase DA391_22560 PF00440 Bacterial regulatory proteins, tetR family DA391_22565 PF06917 Periplasmic pectate lyase DA391_22570 PF06178 Oligogalacturonate-specific porin protein (KdgM) DA391_22575 PF00990 Diguanylate cyclase, GGDEF domain DA391_22575 PF00672 HAMP domain DA391_22575 PF17154 Gammaproteobacterial periplasmic sensor domain DA391_22575 PF00563 EAL domain DA391_22580 PF08352 Oligopeptide/dipeptide transporter, C-terminal region DA391_22580 PF00005 ABC transporter DA391_22585 PF08352 Oligopeptide/dipeptide transporter, C-terminal region DA391_22585 PF00005 ABC transporter DA391_22590 PF12911 N-terminal TM domain of oligopeptide transport permease C DA391_22590 PF00528 Binding-protein-dependent transport system inner membrane component DA391_22595 PF00528 Binding-protein-dependent transport system inner membrane component DA391_22600 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle DA391_22605 PF13332 Hemagglutinin repeat DA391_22605 PF05860 haemagglutination activity domain DA391_22610 PF08479 POTRA domain, ShlB-type DA391_22610 PF17287 POTRA domain DA391_22610 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB DA391_22620 PF07690 Major Facilitator Superfamily DA391_22625 PF05231 MASE1 DA391_22625 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DA391_22625 PF07730 Histidine kinase DA391_22630 PF00196 Bacterial regulatory proteins, luxR family DA391_22630 PF00072 Response regulator receiver domain DA391_22635 PF08019 Phosphoethanolamine transferase EptA/EptB DA391_22635 PF00884 Sulfatase DA391_22640 PF02566 OsmC-like protein DA391_22645 PF12146 Serine aminopeptidase, S33 DA391_22650 PF00324 Amino acid permease DA391_22655 PF00221 Aromatic amino acid lyase DA391_22660 PF01175 Urocanase Rossmann-like domain DA391_22660 PF17391 Urocanase N-terminal domain DA391_22660 PF17392 Urocanase C-terminal domain DA391_22665 PF13426 PAS domain DA391_22665 PF00563 EAL domain DA391_22665 PF00990 Diguanylate cyclase, GGDEF domain DA391_22670 PF00378 Enoyl-CoA hydratase/isomerase DA391_22675 PF07662 Na+ dependent nucleoside transporter C-terminus DA391_22675 PF07670 Nucleoside recognition DA391_22675 PF01773 Na+ dependent nucleoside transporter N-terminus DA391_22685 PF03458 UPF0126 domain DA391_22690 PF03120 NAD-dependent DNA ligase OB-fold domain DA391_22690 PF01653 NAD-dependent DNA ligase adenylation domain DA391_22695 PF00625 Guanylate kinase DA391_22700 PF01192 RNA polymerase Rpb6 DA391_22705 PF04607 Region found in RelA / SpoT proteins DA391_22705 PF02824 TGS domain DA391_22705 PF13291 ACT domain DA391_22710 PF00588 SpoU rRNA Methylase family DA391_22710 PF12105 SpoU, rRNA methylase, C-terminal DA391_22715 PF00270 DEAD/DEAH box helicase DA391_22715 PF17191 RecG wedge domain DA391_22715 PF00271 Helicase conserved C-terminal domain DA391_22720 PF03616 Sodium/glutamate symporter DA391_22725 PF00860 Permease family DA391_22730 PF05170 AsmA family DA391_22745 PF00072 Response regulator receiver domain DA391_22745 PF02954 Bacterial regulatory protein, Fis family DA391_22745 PF00158 Sigma-54 interaction domain DA391_22750 PF09500 Putative thioesterase (yiiD_Cterm) DA391_22750 PF00583 Acetyltransferase (GNAT) family DA391_22755 PF02580 D-Tyr-tRNA(Tyr) deacylase DA391_22760 PF03631 Virulence factor BrkB DA391_22765 PF13419 Haloacid dehalogenase-like hydrolase DA391_22775 PF03951 Glutamine synthetase, beta-Grasp domain DA391_22775 PF00120 Glutamine synthetase, catalytic domain DA391_22780 PF00512 His Kinase A (phospho-acceptor) domain DA391_22780 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DA391_22780 PF00989 PAS fold DA391_22785 PF02954 Bacterial regulatory protein, Fis family DA391_22785 PF00072 Response regulator receiver domain DA391_22785 PF00158 Sigma-54 interaction domain DA391_22790 PF06969 HemN C-terminal domain DA391_22790 PF04055 Radical SAM superfamily DA391_22800 PF04220 Der GTPase activator (YihI) DA391_22810 PF01926 50S ribosome-binding GTPase DA391_22815 PF01612 3'-5' exonuclease DA391_22815 PF00476 DNA polymerase family A DA391_22815 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain DA391_22815 PF01367 5'-3' exonuclease, C-terminal SAM fold DA391_22820 PF01323 DSBA-like thioredoxin domain DA391_22825 PF01636 Phosphotransferase enzyme family DA391_22830 PF06288 Protein of unknown function (DUF1040) DA391_22835 PF12804 MobA-like NTP transferase domain DA391_22840 PF03205 Molybdopterin guanine dinucleotide synthesis protein B DA391_22870 PF00392 Bacterial regulatory proteins, gntR family DA391_22870 PF07729 FCD domain DA391_22875 PF07690 Major Facilitator Superfamily DA391_22880 PF00356 Bacterial regulatory proteins, lacI family DA391_22885 PF00294 pfkB family carbohydrate kinase DA391_22890 PF13407 Periplasmic binding protein domain DA391_22895 PF02653 Branched-chain amino acid transport system / permease component DA391_22900 PF00005 ABC transporter DA391_22905 PF05025 RbsD / FucU transport protein family DA391_22910 PF02705 K+ potassium transporter DA391_22915 PF07728 AAA domain (dynein-related subfamily) DA391_22915 PF17868 AAA lid domain DA391_22915 PF12592 Protein of unknown function (DUF3763) DA391_22920 PF05762 VWA domain containing CoxE-like protein DA391_22930 PF03590 Aspartate-ammonia ligase DA391_22935 PF01037 Lrp/AsnC ligand binding domain DA391_22940 PF00258 Flavodoxin DA391_22945 PF13932 GidA associated domain DA391_22945 PF01134 Glucose inhibited division protein A DA391_22950 PF02527 rRNA small subunit methyltransferase G DA391_22955 PF03899 ATP synthase I chain DA391_22960 PF00119 ATP synthase A chain DA391_22965 PF00137 ATP synthase subunit C DA391_22970 PF00430 ATP synthase B/B' CF(0) DA391_22975 PF00213 ATP synthase delta (OSCP) subunit DA391_22980 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain DA391_22980 PF00306 ATP synthase alpha/beta chain, C terminal domain DA391_22980 PF02874 ATP synthase alpha/beta family, beta-barrel domain DA391_22985 PF00231 ATP synthase DA391_22990 PF02874 ATP synthase alpha/beta family, beta-barrel domain DA391_22990 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain DA391_22995 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain DA391_22995 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain DA391_23000 PF00132 Bacterial transferase hexapeptide (six repeats) DA391_23000 PF12804 MobA-like NTP transferase domain DA391_23005 PF01380 SIS domain DA391_23010 PF12849 PBP superfamily domain DA391_23015 PF00528 Binding-protein-dependent transport system inner membrane component DA391_23020 PF00528 Binding-protein-dependent transport system inner membrane component DA391_23025 PF00005 ABC transporter DA391_23030 PF01895 PhoU domain DA391_23035 PF00497 Bacterial extracellular solute-binding proteins, family 3 DA391_23040 PF00528 Binding-protein-dependent transport system inner membrane component DA391_23045 PF00528 Binding-protein-dependent transport system inner membrane component DA391_23050 PF13419 Haloacid dehalogenase-like hydrolase DA391_23055 PF00860 Permease family DA391_23065 PF00072 Response regulator receiver domain DA391_23065 PF00196 Bacterial regulatory proteins, luxR family DA391_23070 PF00989 PAS fold DA391_23070 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DA391_23070 PF00512 His Kinase A (phospho-acceptor) domain DA391_23075 PF03358 NADPH-dependent FMN reductase DA391_23080 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DA391_23080 PF02203 Tar ligand binding domain homologue DA391_23080 PF00672 HAMP domain DA391_23085 PF00528 Binding-protein-dependent transport system inner membrane component DA391_23090 PF09383 NIL domain DA391_23090 PF00005 ABC transporter DA391_23110 PF01878 EVE domain DA391_23120 PF07055 Enoyl reductase FAD binding domain DA391_23120 PF12241 Trans-2-enoyl-CoA reductase catalytic region DA391_23120 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase DA391_23125 PF12631 MnmE helical domain DA391_23125 PF01926 50S ribosome-binding GTPase DA391_23125 PF10396 GTP-binding protein TrmE N-terminus DA391_23130 PF02096 60Kd inner membrane protein DA391_23130 PF14849 YidC periplasmic domain DA391_23135 PF01809 Putative membrane protein insertion efficiency factor DA391_23140 PF00825 Ribonuclease P DA391_23145 PF00468 Ribosomal protein L34 DA391_23155 PF03797 Autotransporter beta-domain DA391_23160 PF00072 Response regulator receiver domain DA391_23160 PF00196 Bacterial regulatory proteins, luxR family DA391_23165 PF14319 Transposase zinc-binding domain DA391_23165 PF04986 Putative transposase DA391_23180 PF01051 Initiator Replication protein DA391_23190 PF00580 UvrD/REP helicase N-terminal domain DA391_23190 PF13361 UvrD-like helicase C-terminal domain DA391_23200 PF00239 Resolvase, N terminal domain DA391_23200 PF02796 Helix-turn-helix domain of resolvase DA391_23205 PF13700 Domain of unknown function (DUF4158) DA391_23205 PF01526 Tn3 transposase DDE domain DA391_23220 PF00589 Phage integrase family DA391_23290 PF03693 Bacterial antitoxin of ParD toxin-antitoxin type II system and RHH DA391_23300 PF13614 AAA domain DA391_23300 PF18607 ParA helix turn helix domain DA391_23305 PF02195 ParB-like nuclease domain DA391_23305 PF08775 ParB family DA391_23320 PF00717 Peptidase S24-like DA391_23335 PF06406 StbA protein DA391_23350 PF09907 HigB_toxin, RelE-like toxic component of a toxin-antitoxin system DA391_23355 PF01381 Helix-turn-helix DA391_23365 PF06924 Protein of unknown function (DUF1281) DA391_23395 PF02195 ParB-like nuclease domain DA391_23435 PF06067 Domain of unknown function (DUF932) DA391_23455 PF18821 Large polyvalent protein-associated domain 7 DA391_23455 PF03432 Relaxase/Mobilisation nuclease domain DA391_23465 PF13091 PLD-like domain DA391_23575 PF04917 Bacterial shufflon protein, N-terminal constant region DA391_23600 PF00437 Type II/IV secretion system protein DA391_23660 PF01051 Initiator Replication protein DA391_23665 PF01022 Bacterial regulatory protein, arsR family DA391_23670 PF06953 Arsenical resistance operon trans-acting repressor ArsD DA391_23675 PF02374 Anion-transporting ATPase DA391_23680 PF02040 Arsenical pump membrane protein DA391_23685 PF03960 ArsC family DA391_23690 PF02796 Helix-turn-helix domain of resolvase DA391_23690 PF00239 Resolvase, N terminal domain DA391_23725 PF00072 Response regulator receiver domain DA391_23725 PF00196 Bacterial regulatory proteins, luxR family DA391_23730 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain DA391_23735 PF00577 Outer membrane usher protein DA391_23735 PF13954 PapC N-terminal domain DA391_23735 PF13953 PapC C-terminal domain DA391_23765 PF05015 RelE-like toxin of type II toxin-antitoxin system HigB DA391_23770 PF01381 Helix-turn-helix DA391_23800 PF13362 Toprim domain DA391_23800 PF08401 Domain of unknown function (DUF1738) DA391_23800 PF18818 Metallopeptidase superfamily domain DA391_23805 PF00589 Phage integrase family DA391_23820 PF02517 CPBP intramembrane metalloprotease DA391_23900 PF00437 Type II/IV secretion system protein DA391_23915 PF00437 Type II/IV secretion system protein DA391_23940 PF02357 Transcription termination factor nusG DA391_23965 PF03743 Bacterial conjugation TrbI-like protein DA391_23975 PF03524 Conjugal transfer protein DA391_23985 PF03135 CagE, TrbE, VirB family, component of type IV transporter system DA391_23990 PF05101 Type IV secretory pathway, VirB3-like protein DA391_24000 PF00437 Type II/IV secretion system protein DA391_24005 PF16509 TrfB plasmid transcriptional repressor DA391_24035 PF17394 Uncharacterized KleE stable inheritance protein DA391_24040 PF16509 TrfB plasmid transcriptional repressor DA391_24045 PF13614 AAA domain DA391_24050 PF08535 KorB domain DA391_24050 PF02195 ParB-like nuclease domain DA391_24050 PF06613 KorB C-terminal beta-barrel domain DA391_24085 PF11657 Transcriptional activator TraM DA391_24105 PF03432 Relaxase/Mobilisation nuclease domain DA391_24105 PF18821 Large polyvalent protein-associated domain 7 DA391_24110 PF02534 Type IV secretory system Conjugative DNA transfer DA391_24115 PF10502 Signal peptidase, peptidase S26 DA391_24120 PF01751 Toprim domain DA391_24120 PF01131 DNA topoisomerase