locus-tag class description M479_1 PF13693 Winged helix-turn-helix DNA-binding M479_10 PF02894 Oxidoreductase family, C-terminal alpha/beta domain M479_10 PF01408 Oxidoreductase family, NAD-binding Rossmann fold M479_100 PF00285 Citrate synthase, C-terminal domain M479_1000 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain M479_1000 PF01409 tRNA synthetases class II core domain (F) M479_1001 PF03483 B3/4 domain M479_1001 PF01588 Putative tRNA binding domain M479_1001 PF03484 tRNA synthetase B5 domain M479_1001 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain M479_1001 PF03147 Ferredoxin-fold anticodon binding domain M479_1002 PF00216 Bacterial DNA-binding protein M479_1004 PF01032 FecCD transport family M479_1005 PF00255 Glutathione peroxidase M479_1006 PF00005 ABC transporter M479_1007 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family M479_1008 PF00535 Glycosyl transferase family 2 M479_1009 PF00551 Formyl transferase M479_1009 PF02911 Formyl transferase, C-terminal domain M479_1009 PF01370 NAD dependent epimerase/dehydratase family M479_101 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit M479_1010 PF01522 Polysaccharide deacetylase M479_1011 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase M479_1012 PF00892 EamA-like transporter family M479_1014 PF00877 NlpC/P60 family M479_1015 PF03099 Biotin/lipoate A/B protein ligase family M479_1015 PF10437 Bacterial lipoate protein ligase C-terminus M479_1016 PF02696 Uncharacterized ACR, YdiU/UPF0061 family M479_1017 PF00793 DAHP synthetase I family M479_1018 PF03618 Kinase/pyrophosphorylase M479_1019 PF00391 PEP-utilising enzyme, mobile domain M479_1019 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain M479_1019 PF02896 PEP-utilising enzyme, TIM barrel domain M479_102 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit M479_1020 PF01594 AI-2E family transporter M479_1021 PF01565 FAD binding domain M479_1021 PF13183 4Fe-4S dicluster domain M479_1021 PF02913 FAD linked oxidases, C-terminal domain M479_1022 PF03061 Thioesterase superfamily M479_1023 PF01521 Iron-sulphur cluster biosynthesis M479_1024 PF01458 Uncharacterized protein family (UPF0051) M479_1025 PF00005 ABC transporter M479_1026 PF01458 Uncharacterized protein family (UPF0051) M479_1027 PF00266 Aminotransferase class-V M479_1028 PF02657 Fe-S metabolism associated domain M479_1029 PF03734 L,D-transpeptidase catalytic domain M479_1029 PF01476 LysM domain M479_1029 PF17969 L,D-transpeptidase C-terminal domain M479_103 PF02910 Fumarate reductase flavoprotein C-term M479_103 PF00890 FAD binding domain M479_1030 PF01695 IstB-like ATP binding protein M479_1031 PF00665 Integrase core domain M479_1031 PF02796 Helix-turn-helix domain of resolvase M479_1033 PF04728 Lipoprotein leucine-zipper M479_1034 PF00224 Pyruvate kinase, barrel domain M479_1034 PF02887 Pyruvate kinase, alpha/beta domain M479_1037 PF01554 MatE M479_1038 PF00677 Lumazine binding domain M479_104 PF13085 2Fe-2S iron-sulfur cluster binding domain M479_1040 PF07690 Major Facilitator Superfamily M479_1041 PF03466 LysR substrate binding domain M479_1041 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M479_1042 PF00356 Bacterial regulatory proteins, lacI family M479_1044 PF02777 Iron/manganese superoxide dismutases, C-terminal domain M479_1044 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain M479_1045 PF00877 NlpC/P60 family M479_1047 PF00462 Glutaredoxin M479_1048 PF00929 Exonuclease M479_1049 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily M479_105 PF16078 2-oxoglutarate dehydrogenase N-terminus M479_105 PF00676 Dehydrogenase E1 component M479_105 PF16870 2-oxoglutarate dehydrogenase C-terminal M479_105 PF02779 Transketolase, pyrimidine binding domain M479_1050 PF18807 Tripartite Tc toxins repeat M479_1050 PF14431 YwqJ-like deaminase M479_1051 PF00724 NADH:flavin oxidoreductase / NADH oxidase family M479_1052 PF16925 Tetracyclin repressor-like, C-terminal domain M479_1052 PF00440 Bacterial regulatory proteins, tetR family M479_1053 PF00884 Sulfatase M479_1053 PF08019 Phosphoethanolamine transferase EptA/EptB M479_1054 PF06945 Protein of unknown function (DUF1289) M479_1055 PF00248 Aldo/keto reductase family M479_1056 PF05433 Glycine zipper 2TM domain M479_1057 PF03702 Anhydro-N-acetylmuramic acid kinase M479_1058 PF09864 Membrane-bound lysozyme-inhibitor of c-type lysozyme M479_1059 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region M479_1059 PF01243 Pyridoxamine 5'-phosphate oxidase M479_106 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) M479_106 PF02817 e3 binding domain M479_106 PF00364 Biotin-requiring enzyme M479_1060 PF01479 S4 domain M479_1060 PF00579 tRNA synthetases class I (W and Y) M479_1061 PF08543 Phosphomethylpyrimidine kinase M479_1062 PF02798 Glutathione S-transferase, N-terminal domain M479_1062 PF00043 Glutathione S-transferase, C-terminal domain M479_1063 PF11656 YjbD family (DUF3811) M479_1064 PF04893 Yip1 domain M479_1065 PF00854 POT family M479_1068 PF00005 ABC transporter M479_1069 PF08352 Oligopeptide/dipeptide transporter, C-terminal region M479_1069 PF00005 ABC transporter M479_107 PF08442 ATP-grasp domain M479_107 PF00549 CoA-ligase M479_1070 PF12911 N-terminal TM domain of oligopeptide transport permease C M479_1070 PF00528 Binding-protein-dependent transport system inner membrane component M479_1071 PF00528 Binding-protein-dependent transport system inner membrane component M479_1072 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle M479_1074 PF00158 Sigma-54 interaction domain M479_1074 PF02954 Bacterial regulatory protein, Fis family M479_1075 PF04012 PspA/IM30 family M479_1076 PF06667 Phage shock protein B M479_1077 PF04024 PspC domain M479_1079 PF04317 YcjX-like family, DUF463 M479_108 PF02629 CoA binding domain M479_108 PF00549 CoA-ligase M479_1080 PF05128 Domain of unknown function (DUF697) M479_1083 PF18024 Helix-turn-helix domain M479_1083 PF00158 Sigma-54 interaction domain M479_1085 PF01695 IstB-like ATP binding protein M479_1086 PF01695 IstB-like ATP binding protein M479_1087 PF01695 IstB-like ATP binding protein M479_1088 PF00665 Integrase core domain M479_1088 PF02796 Helix-turn-helix domain of resolvase M479_1089 PF08534 Redoxin M479_109 PF01797 Transposase IS200 like M479_1090 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain M479_1090 PF13378 Enolase C-terminal domain-like M479_1091 PF00246 Zinc carboxypeptidase M479_1092 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle M479_1093 PF01544 CorA-like Mg2+ transporter protein M479_1095 PF07859 alpha/beta hydrolase fold M479_1095 PF13472 GDSL-like Lipase/Acylhydrolase family M479_1097 PF01171 PP-loop family M479_1098 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg M479_1098 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II M479_1098 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain M479_1098 PF10371 Domain of unknown function M479_1098 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase M479_1099 PF00893 Small Multidrug Resistance protein M479_11 PF02894 Oxidoreductase family, C-terminal alpha/beta domain M479_11 PF01408 Oxidoreductase family, NAD-binding Rossmann fold M479_110 PF01654 Cytochrome bd terminal oxidase subunit I M479_1100 PF02308 MgtC family M479_1101 PF03891 Domain of unknown function (DUF333) M479_1102 PF03724 META domain M479_1103 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain M479_1103 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain M479_1104 PF11739 Dicarboxylate transport M479_1105 PF13617 YnbE-like lipoprotein M479_1106 PF07027 Protein of unknown function (DUF1318) M479_1107 PF01232 Mannitol dehydrogenase Rossmann domain M479_1107 PF08125 Mannitol dehydrogenase C-terminal domain M479_1108 PF04198 Putative sugar-binding domain M479_1108 PF00325 Bacterial regulatory proteins, crp family M479_1109 PF02525 Flavodoxin-like fold M479_111 PF02322 Cytochrome bd terminal oxidase subunit II M479_1110 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold M479_1110 PF11898 Domain of unknown function (DUF3418) M479_1110 PF04408 Helicase associated domain (HA2) M479_1110 PF00271 Helicase conserved C-terminal domain M479_1110 PF00270 DEAD/DEAH box helicase M479_1113 PF00089 Trypsin M479_1115 PF01292 Prokaryotic cytochrome b561 M479_1116 PF04264 YceI-like domain M479_1118 PF18807 Tripartite Tc toxins repeat M479_1118 PF14431 YwqJ-like deaminase M479_112 PF08173 Membrane bound YbgT-like protein M479_1120 PF02074 Carboxypeptidase Taq (M32) metallopeptidase M479_1121 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M479_1121 PF00672 HAMP domain M479_1121 PF00512 His Kinase A (phospho-acceptor) domain M479_1122 PF00072 Response regulator receiver domain M479_1122 PF00486 Transcriptional regulatory protein, C terminal M479_1124 PF13520 Amino acid permease M479_1125 PF07338 Protein of unknown function (DUF1471) M479_1126 PF05222 Alanine dehydrogenase/PNT, N-terminal domain M479_1126 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch M479_1126 PF01262 Alanine dehydrogenase/PNT, C-terminal domain M479_1127 PF02233 NAD(P) transhydrogenase beta subunit M479_1128 PF00582 Universal stress protein family M479_1129 PF13545 Crp-like helix-turn-helix domain M479_1129 PF00027 Cyclic nucleotide-binding domain M479_113 PF09600 Cyd operon protein YbgE (Cyd_oper_YbgE) M479_1130 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain M479_1130 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain M479_1131 PF00245 Alkaline phosphatase M479_1133 PF13419 Haloacid dehalogenase-like hydrolase M479_1134 PF01842 ACT domain M479_1135 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain M479_1135 PF00205 Thiamine pyrophosphate enzyme, central domain M479_1135 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain M479_114 PF03061 Thioesterase superfamily M479_1141 PF10423 Bacterial AMP nucleoside phosphorylase N-terminus M479_1141 PF01048 Phosphorylase superfamily M479_1142 PF00005 ABC transporter M479_1143 PF00528 Binding-protein-dependent transport system inner membrane component M479_1144 PF09084 NMT1/THI5 like M479_1145 PF13407 Periplasmic binding protein domain M479_1147 PF00356 Bacterial regulatory proteins, lacI family M479_1148 PF06649 Protein of unknown function (DUF1161) M479_1149 PF00654 Voltage gated chloride channel M479_115 PF01618 MotA/TolQ/ExbB proton channel family M479_1152 PF00480 ROK family M479_1153 PF03466 LysR substrate binding domain M479_1153 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M479_1154 PF07690 Major Facilitator Superfamily M479_1155 PF05472 DNA replication terminus site-binding protein (Ter protein) M479_1156 PF10415 Fumarase C C-terminus M479_1156 PF00206 Lyase M479_1157 PF01238 Phosphomannose isomerase type I M479_1158 PF06097 Bacterial protein of unknown function (DUF945) M479_116 PF02472 Biopolymer transport protein ExbD/TolR M479_1160 PF13593 SBF-like CPA transporter family (DUF4137) M479_1161 PF02894 Oxidoreductase family, C-terminal alpha/beta domain M479_1161 PF01408 Oxidoreductase family, NAD-binding Rossmann fold M479_1162 PF02311 AraC-like ligand binding domain M479_1162 PF12833 Helix-turn-helix domain M479_1163 PF02653 Branched-chain amino acid transport system / permease component M479_1164 PF02653 Branched-chain amino acid transport system / permease component M479_1165 PF00005 ABC transporter M479_1166 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family M479_1167 PF02782 FGGY family of carbohydrate kinases, C-terminal domain M479_1168 PF02610 L-arabinose isomerase M479_1168 PF11762 L-arabinose isomerase C-terminal domain M479_117 PF06519 TolA C-terminal M479_117 PF06519 TolA C-terminal M479_1170 PF00005 ABC transporter M479_1170 PF00664 ABC transporter transmembrane region M479_1170 PF03412 Peptidase C39 family M479_1172 PF13533 Biotin-lipoyl like M479_1173 PF00005 ABC transporter M479_1173 PF00664 ABC transporter transmembrane region M479_1174 PF00664 ABC transporter transmembrane region M479_1174 PF00005 ABC transporter M479_1174 PF03412 Peptidase C39 family M479_1175 PF10754 Protein of unknown function (DUF2569) M479_1176 PF02508 Rnf-Nqr subunit, membrane protein M479_1177 PF04060 Putative Fe-S cluster M479_1178 PF13375 RnfC Barrel sandwich hybrid domain M479_1178 PF10531 SLBB domain M479_1178 PF13237 4Fe-4S dicluster domain M479_1178 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit M479_1179 PF12833 Helix-turn-helix domain M479_1179 PF06445 GyrI-like small molecule binding domain M479_118 PF04052 TolB amino-terminal domain M479_118 PF07676 WD40-like Beta Propeller Repeat M479_1180 PF03116 NQR2, RnfD, RnfE family M479_1181 PF04205 FMN-binding domain M479_1182 PF02508 Rnf-Nqr subunit, membrane protein M479_1183 PF00730 HhH-GPD superfamily base excision DNA repair protein M479_1183 PF00633 Helix-hairpin-helix motif M479_1183 PF10576 Iron-sulfur binding domain of endonuclease III M479_1184 PF01370 NAD dependent epimerase/dehydratase family M479_1185 PF07690 Major Facilitator Superfamily M479_1186 PF00575 S1 RNA binding domain M479_1186 PF17876 Cold shock domain M479_1186 PF08206 Ribonuclease B OB domain M479_1186 PF00773 RNB domain M479_1187 PF13722 5TM C-terminal transporter carbon starvation CstA M479_1187 PF02554 Carbon starvation protein CstA M479_1188 PF04328 Selenoprotein, putative M479_1189 PF00923 Transaldolase/Fructose-6-phosphate aldolase M479_119 PF00691 OmpA family M479_1191 PF00596 Class II Aldolase and Adducin N-terminal domain M479_1193 PF01253 Translation initiation factor SUI1 M479_1194 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family M479_1196 PF18073 Rubredoxin metal binding domain M479_1197 PF06305 Lipopolysaccharide assembly protein A domain M479_1198 PF01569 PAP2 superfamily M479_1199 PF00925 GTP cyclohydrolase II M479_12 PF13407 Periplasmic binding protein domain M479_120 PF16331 TolA binding protein trimerisation M479_120 PF13174 Tetratricopeptide repeat M479_1200 PF00694 Aconitase C-terminal domain M479_1200 PF00330 Aconitase family (aconitate hydratase) M479_1202 PF03466 LysR substrate binding domain M479_1202 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M479_1203 PF01797 Transposase IS200 like M479_1204 PF08272 Topoisomerase I zinc-ribbon-like M479_1204 PF01131 DNA topoisomerase M479_1204 PF01751 Toprim domain M479_1204 PF01396 Topoisomerase DNA binding C4 zinc finger M479_1206 PF10692 Protein of unknown function (DUF2498) M479_1207 PF08496 Peptidase family S49 N-terminal M479_1207 PF01343 Peptidase family S49 M479_1208 PF00106 short chain dehydrogenase M479_1209 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP M479_1210 PF01479 S4 domain M479_1210 PF00849 RNA pseudouridylate synthase M479_1211 PF01300 Telomere recombination M479_1212 PF02811 PHP domain M479_1213 PF00425 chorismate binding enzyme M479_1213 PF04715 Anthranilate synthase component I, N terminal region M479_1214 PF00117 Glutamine amidotransferase class-I M479_1215 PF00591 Glycosyl transferase family, a/b domain M479_1215 PF02885 Glycosyl transferase family, helical bundle domain M479_1216 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase M479_1216 PF00218 Indole-3-glycerol phosphate synthase M479_1217 PF00291 Pyridoxal-phosphate dependent enzyme M479_1218 PF00290 Tryptophan synthase alpha chain M479_1220 PF03922 OmpW family M479_1224 PF04279 Intracellular septation protein A M479_1225 PF03061 Thioesterase superfamily M479_1226 PF00872 Transposase, Mutator family M479_1227 PF03544 Gram-negative bacterial TonB protein C-terminal M479_1228 PF03795 YCII-related domain M479_1231 PF13505 Outer membrane protein beta-barrel domain M479_1232 PF13091 PLD-like domain M479_1232 PF13396 Phospholipase_D-nuclease N-terminal M479_1233 PF04269 Protein of unknown function, DUF440 M479_1235 PF00005 ABC transporter M479_1235 PF08352 Oligopeptide/dipeptide transporter, C-terminal region M479_1236 PF00005 ABC transporter M479_1236 PF08352 Oligopeptide/dipeptide transporter, C-terminal region M479_1237 PF00528 Binding-protein-dependent transport system inner membrane component M479_1237 PF12911 N-terminal TM domain of oligopeptide transport permease C M479_1238 PF00528 Binding-protein-dependent transport system inner membrane component M479_1239 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle M479_1240 PF01914 MarC family integral membrane protein M479_1241 PF00171 Aldehyde dehydrogenase family M479_1241 PF00465 Iron-containing alcohol dehydrogenase M479_1242 PF00265 Thymidine kinase M479_1243 PF00816 H-NS histone family M479_1244 PF00872 Transposase, Mutator family M479_1245 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain M479_1245 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain M479_1245 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain M479_1246 PF00072 Response regulator receiver domain M479_1247 PF02810 SEC-C motif M479_1248 PF00551 Formyl transferase M479_1248 PF01842 ACT domain M479_125 PF02445 Quinolinate synthetase A protein M479_1251 PF00872 Transposase, Mutator family M479_1252 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M479_1252 PF03466 LysR substrate binding domain M479_1253 PF03372 Endonuclease/Exonuclease/phosphatase family M479_1254 PF00293 NUDIX domain M479_1255 PF07383 Protein of unknown function (DUF1496) M479_1256 PF01751 Toprim domain M479_1256 PF01131 DNA topoisomerase M479_1257 PF02769 AIR synthase related protein, C-terminal domain M479_1257 PF00586 AIR synthase related protein, N-terminal domain M479_1258 PF00881 Nitroreductase family M479_1259 PF01343 Peptidase family S49 M479_126 PF04973 Nicotinamide mononucleotide transporter M479_1260 PF00710 Asparaginase, N-terminal M479_1260 PF17763 Glutaminase/Asparaginase C-terminal domain M479_1261 PF00857 Isochorismatase family M479_1262 PF07023 Protein of unknown function (DUF1315) M479_1263 PF01641 SelR domain M479_1264 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain M479_1264 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain M479_1265 PF01263 Aldose 1-epimerase M479_1266 PF06629 MltA-interacting protein MipA M479_1267 PF08298 PrkA AAA domain M479_1267 PF06798 PrkA serine protein kinase C-terminal domain M479_1268 PF04285 Protein of unknown function (DUF444) M479_127 PF01545 Cation efflux family M479_1270 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M479_1270 PF03466 LysR substrate binding domain M479_1271 PF02678 Pirin M479_1271 PF05726 Pirin C-terminal cupin domain M479_1272 PF07690 Major Facilitator Superfamily M479_1273 PF01266 FAD dependent oxidoreductase M479_1274 PF04293 SpoVR like protein M479_1275 PF07840 FadR C-terminal domain M479_1275 PF00392 Bacterial regulatory proteins, gntR family M479_1276 PF06450 Bacterial Na+/H+ antiporter B (NhaB) M479_1277 PF02600 Disulfide bond formation protein DsbB M479_128 PF00793 DAHP synthetase I family M479_1280 PF00266 Aminotransferase class-V M479_1282 PF02413 Caudovirales tail fibre assembly protein, lambda gpK M479_129 PF00793 DAHP synthetase I family M479_1298 PF01797 Transposase IS200 like M479_13 PF00005 ABC transporter M479_130 PF00300 Histidine phosphatase superfamily (branch 1) M479_132 PF01263 Aldose 1-epimerase M479_1326 PF06530 Phage antitermination protein Q M479_1328 PF05772 NinB protein M479_1331 PF01695 IstB-like ATP binding protein M479_1332 PF00665 Integrase core domain M479_1332 PF02796 Helix-turn-helix domain of resolvase M479_1333 PF12167 Arm DNA-binding domain M479_1333 PF00589 Phage integrase family M479_1334 PF03692 Putative zinc- or iron-chelating domain M479_1335 PF01557 Fumarylacetoacetate (FAA) hydrolase family M479_1336 PF13406 Transglycosylase SLT domain M479_1337 PF05166 YcgL domain M479_1338 PF05209 Septum formation inhibitor MinC, N-terminal domain M479_1338 PF03775 Septum formation inhibitor MinC, C-terminal domain M479_1339 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain M479_134 PF08544 GHMP kinases C terminal M479_134 PF10509 Galactokinase galactose-binding signature M479_134 PF00288 GHMP kinases N terminal domain M479_1340 PF03776 Septum formation topological specificity factor MinE M479_1341 PF01612 3'-5' exonuclease M479_1341 PF00570 HRDC domain M479_1342 PF13193 AMP-binding enzyme C-terminal domain M479_1342 PF00501 AMP-binding enzyme M479_1343 PF03843 Outer membrane lipoprotein Slp family M479_1344 PF00814 Glycoprotease family M479_1345 PF04851 Type III restriction enzyme, res subunit M479_1345 PF13307 Helicase C-terminal domain M479_1346 PF01042 Endoribonuclease L-PSP M479_1347 PF00893 Small Multidrug Resistance protein M479_1348 PF00893 Small Multidrug Resistance protein M479_1349 PF01081 KDPG and KHG aldolase M479_135 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain M479_135 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain M479_1351 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain M479_1351 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain M479_1352 PF01418 Helix-turn-helix domain, rpiR family M479_1352 PF01380 SIS domain M479_1353 PF02887 Pyruvate kinase, alpha/beta domain M479_1353 PF00224 Pyruvate kinase, barrel domain M479_1354 PF03279 Bacterial lipid A biosynthesis acyltransferase M479_1355 PF01476 LysM domain M479_1355 PF08525 Opacity-associated protein A N-terminal motif M479_1355 PF01551 Peptidase family M23 M479_1356 PF01297 Zinc-uptake complex component A periplasmic M479_1357 PF00005 ABC transporter M479_1358 PF00950 ABC 3 transport family M479_1359 PF05491 RuvB C-terminal winged helix domain M479_1359 PF17864 RuvB AAA lid domain M479_1359 PF05496 Holliday junction DNA helicase RuvB P-loop domain M479_136 PF16363 GDP-mannose 4,6 dehydratase M479_1360 PF07499 RuvA, C-terminal domain M479_1360 PF01330 RuvA N terminal domain M479_1361 PF02075 Crossover junction endodeoxyribonuclease RuvC M479_1362 PF01709 Transcriptional regulator M479_1363 PF00293 NUDIX domain M479_1364 PF01336 OB-fold nucleic acid binding domain M479_1364 PF02938 GAD domain M479_1364 PF00152 tRNA synthetases class II (D, K and N) M479_1365 PF01904 Protein of unknown function DUF72 M479_1366 PF01124 MAPEG family M479_1367 PF13649 Methyltransferase domain M479_1368 PF08003 Protein of unknown function (DUF1698) M479_1369 PF03932 CutC family M479_1370 PF06185 YecM protein M479_1371 PF03485 Arginyl tRNA synthetase N terminal domain M479_1371 PF00750 tRNA synthetases class I (R) M479_1371 PF05746 DALR anticodon binding domain M479_1372 PF13332 Hemagglutinin repeat M479_1372 PF05860 haemagglutination activity domain M479_1373 PF08479 POTRA domain, ShlB-type M479_1373 PF17287 POTRA domain M479_1373 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB M479_1374 PF03023 Lipid II flippase MurJ M479_1375 PF01408 Oxidoreductase family, NAD-binding Rossmann fold M479_1376 PF13302 Acetyltransferase (GNAT) domain M479_1377 PF07690 Major Facilitator Superfamily M479_1378 PF07273 Protein of unknown function (DUF1439) M479_1379 PF02613 Nitrate reductase delta subunit M479_1380 PF02811 PHP domain M479_1382 PF00480 ROK family M479_1382 PF01325 Iron dependent repressor, N-terminal DNA binding domain M479_1383 PF03009 Glycerophosphoryl diester phosphodiesterase family M479_1384 PF08402 TOBE domain M479_1384 PF00005 ABC transporter M479_1385 PF01797 Transposase IS200 like M479_1386 PF00005 ABC transporter M479_1386 PF08402 TOBE domain M479_1387 PF00528 Binding-protein-dependent transport system inner membrane component M479_1388 PF00528 Binding-protein-dependent transport system inner membrane component M479_1390 PF03009 Glycerophosphoryl diester phosphodiesterase family M479_1392 PF00916 Sulfate permease family M479_1392 PF01740 STAS domain M479_1393 PF00793 DAHP synthetase I family M479_1394 PF13369 Transglutaminase-like superfamily M479_1395 PF04247 Invasion gene expression up-regulator, SirB M479_1396 PF17827 PrmC N-terminal domain M479_1396 PF13847 Methyltransferase domain M479_1397 PF03462 PCRF domain M479_1397 PF00472 RF-1 domain M479_1398 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain M479_1398 PF01488 Shikimate / quinate 5-dehydrogenase M479_1398 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain M479_1399 PF03550 Outer membrane lipoprotein LolB M479_14 PF02653 Branched-chain amino acid transport system / permease component M479_140 PF00005 ABC transporter M479_1400 PF00288 GHMP kinases N terminal domain M479_1400 PF08544 GHMP kinases C terminal M479_1401 PF14572 Phosphoribosyl synthetase-associated domain M479_1401 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase M479_1402 PF10762 Protein of unknown function (DUF2583) M479_1403 PF01195 Peptidyl-tRNA hydrolase M479_1404 PF01926 50S ribosome-binding GTPase M479_1404 PF06071 Protein of unknown function (DUF933) M479_141 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M479_141 PF03459 TOBE domain M479_1413 PF02129 X-Pro dipeptidyl-peptidase (S15 family) M479_1414 PF00072 Response regulator receiver domain M479_1414 PF00486 Transcriptional regulatory protein, C terminal M479_1415 PF00665 Integrase core domain M479_1415 PF02796 Helix-turn-helix domain of resolvase M479_1416 PF01695 IstB-like ATP binding protein M479_1417 PF00486 Transcriptional regulatory protein, C terminal M479_1417 PF00072 Response regulator receiver domain M479_1418 PF00512 His Kinase A (phospho-acceptor) domain M479_1418 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M479_1418 PF00672 HAMP domain M479_142 PF10766 Multidrug efflux pump-associated protein AcrZ M479_1427 PF08242 Methyltransferase domain M479_1432 PF00872 Transposase, Mutator family M479_144 PF00528 Binding-protein-dependent transport system inner membrane component M479_1441 PF01370 NAD dependent epimerase/dehydratase family M479_1442 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal M479_1442 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III M479_1443 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III M479_1443 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal M479_1445 PF05962 HutD M479_1446 PF01979 Amidohydrolase family M479_1447 PF07702 UTRA domain M479_1447 PF00392 Bacterial regulatory proteins, gntR family M479_1448 PF01979 Amidohydrolase family M479_1449 PF00665 Integrase core domain M479_1449 PF02796 Helix-turn-helix domain of resolvase M479_145 PF00005 ABC transporter M479_145 PF03459 TOBE domain M479_1450 PF01695 IstB-like ATP binding protein M479_1452 PF00872 Transposase, Mutator family M479_1453 PF00267 Gram-negative porin M479_1454 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family M479_1455 PF04996 Succinylarginine dihydrolase M479_1456 PF00171 Aldehyde dehydrogenase family M479_1457 PF04958 Arginine N-succinyltransferase beta subunit M479_1458 PF00202 Aminotransferase class-III M479_1461 PF00392 Bacterial regulatory proteins, gntR family M479_1461 PF00155 Aminotransferase class I and II M479_1462 PF00672 HAMP domain M479_1462 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term M479_1462 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M479_1462 PF07730 Histidine kinase M479_1464 PF01699 Sodium/calcium exchanger protein M479_1465 PF02562 PhoH-like protein M479_1468 PF13994 PgaD-like protein M479_1469 PF00535 Glycosyl transferase family 2 M479_147 PF10282 Lactonase, 7-bladed beta-propeller M479_1470 PF14883 Hypothetical glycosyl hydrolase family 13 M479_1470 PF01522 Polysaccharide deacetylase M479_1472 PF00557 Metallopeptidase family M24 M479_1473 PF09313 Domain of unknown function (DUF1971) M479_1473 PF03848 Tellurite resistance protein TehB M479_1475 PF00578 AhpC/TSA family M479_1476 PF12704 MacB-like periplasmic core domain M479_1476 PF02687 FtsX-like permease family M479_1476 PF00005 ABC transporter M479_1478 PF00005 ABC transporter M479_1478 PF02687 FtsX-like permease family M479_1478 PF12704 MacB-like periplasmic core domain M479_148 PF00202 Aminotransferase class-III M479_1480 PF10634 Fe2+ transport protein M479_1481 PF03239 Iron permease FTR1 family M479_1484 PF04960 Glutaminase M479_1485 PF00455 DeoR C terminal sensor domain M479_1485 PF08220 DeoR-like helix-turn-helix domain M479_1486 PF00324 Amino acid permease M479_1487 PF00155 Aminotransferase class I and II M479_1488 PF02508 Rnf-Nqr subunit, membrane protein M479_149 PF06968 Biotin and Thiamin Synthesis associated domain M479_149 PF04055 Radical SAM superfamily M479_1490 PF04909 Amidohydrolase M479_1494 PF03466 LysR substrate binding domain M479_1494 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M479_1495 PF03328 HpcH/HpaI aldolase/citrate lyase family M479_1496 PF01575 MaoC like domain M479_1497 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain M479_1497 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain M479_1499 PF00196 Bacterial regulatory proteins, luxR family M479_1499 PF00072 Response regulator receiver domain M479_15 PF02894 Oxidoreductase family, C-terminal alpha/beta domain M479_15 PF01408 Oxidoreductase family, NAD-binding Rossmann fold M479_150 PF00155 Aminotransferase class I and II M479_1500 PF00989 PAS fold M479_1500 PF01627 Hpt domain M479_1500 PF00512 His Kinase A (phospho-acceptor) domain M479_1500 PF00497 Bacterial extracellular solute-binding proteins, family 3 M479_1500 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M479_1500 PF00072 Response regulator receiver domain M479_1502 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain M479_1502 PF02753 Pili assembly chaperone PapD, C-terminal domain M479_1503 PF00577 Outer membrane usher protein M479_1503 PF13954 PapC N-terminal domain M479_1503 PF13953 PapC C-terminal domain M479_1505 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain M479_1505 PF02753 Pili assembly chaperone PapD, C-terminal domain M479_1506 PF00872 Transposase, Mutator family M479_1509 PF00589 Phage integrase family M479_1509 PF13356 Arm DNA-binding domain M479_151 PF08241 Methyltransferase domain M479_1510 PF00425 chorismate binding enzyme M479_1511 PF07690 Major Facilitator Superfamily M479_1512 PF00664 ABC transporter transmembrane region M479_1512 PF00005 ABC transporter M479_1513 PF00664 ABC transporter transmembrane region M479_1513 PF00005 ABC transporter M479_1513 PF08021 Siderophore-interacting FAD-binding domain M479_1513 PF04954 Siderophore-interacting protein M479_1515 PF00501 AMP-binding enzyme M479_1515 PF00668 Condensation domain M479_1515 PF08242 Methyltransferase domain M479_1515 PF00550 Phosphopantetheine attachment site M479_1516 PF02801 Beta-ketoacyl synthase, C-terminal domain M479_1516 PF00550 Phosphopantetheine attachment site M479_1516 PF00698 Acyl transferase domain M479_1516 PF00109 Beta-ketoacyl synthase, N-terminal domain M479_1516 PF00668 Condensation domain M479_1516 PF16197 Ketoacyl-synthetase C-terminal extension M479_1518 PF00975 Thioesterase domain M479_1519 PF13193 AMP-binding enzyme C-terminal domain M479_1519 PF00501 AMP-binding enzyme M479_1520 PF00593 TonB dependent receptor M479_1520 PF07715 TonB-dependent Receptor Plug Domain M479_1528 PF01695 IstB-like ATP binding protein M479_1529 PF02796 Helix-turn-helix domain of resolvase M479_1529 PF00665 Integrase core domain M479_1532 PF08402 TOBE domain M479_1532 PF00005 ABC transporter M479_1533 PF00528 Binding-protein-dependent transport system inner membrane component M479_1534 PF00528 Binding-protein-dependent transport system inner membrane component M479_1535 PF01547 Bacterial extracellular solute-binding protein M479_1536 PF01408 Oxidoreductase family, NAD-binding Rossmann fold M479_1536 PF02894 Oxidoreductase family, C-terminal alpha/beta domain M479_154 PF02151 UvrB/uvrC motif M479_154 PF12344 Ultra-violet resistance protein B M479_154 PF00271 Helicase conserved C-terminal domain M479_154 PF04851 Type III restriction enzyme, res subunit M479_154 PF17757 UvrB interaction domain M479_1543 PF00872 Transposase, Mutator family M479_1544 PF00872 Transposase, Mutator family M479_155 PF09905 DNA-binding protein VF530 M479_1556 PF05638 Type VI secretion system effector, Hcp M479_156 PF01933 Uncharacterised protein family UPF0052 M479_1565 PF01066 CDP-alcohol phosphatidyltransferase M479_1566 PF08459 UvrC Helix-hairpin-helix N-terminal M479_1566 PF02151 UvrB/uvrC motif M479_1566 PF01541 GIY-YIG catalytic domain M479_1567 PF00196 Bacterial regulatory proteins, luxR family M479_1567 PF00072 Response regulator receiver domain M479_1568 PF10769 Protein of unknown function (DUF2594) M479_1569 PF06942 GlpM protein M479_1571 PF13505 Outer membrane protein beta-barrel domain M479_1573 PF00324 Amino acid permease M479_1574 PF01344 Kelch motif M479_1575 PF03358 NADPH-dependent FMN reductase M479_1576 PF04261 Dyp-type peroxidase family M479_1577 PF09375 Imelysin M479_1577 PF13473 Cupredoxin-like domain M479_1578 PF03239 Iron permease FTR1 family M479_1579 PF00474 Sodium:solute symporter family M479_158 PF04055 Radical SAM superfamily M479_158 PF06463 Molybdenum Cofactor Synthesis C M479_1581 PF14850 DNA-binding domain of Proline dehydrogenase M479_1581 PF00171 Aldehyde dehydrogenase family M479_1581 PF01619 Proline dehydrogenase M479_1581 PF18327 Proline utilization A proline dehydrogenase N-terminal domain M479_1588 PF00291 Pyridoxal-phosphate dependent enzyme M479_1589 PF02899 Phage integrase, N-terminal SAM-like domain M479_159 PF01967 MoaC family M479_1590 PF04545 Sigma-70, region 4 M479_1590 PF04539 Sigma-70 region 3 M479_1590 PF04542 Sigma-70 region 2 M479_1591 PF00700 Bacterial flagellin C-terminal helical region M479_1591 PF08884 Flagellin D3 domain M479_1591 PF00669 Bacterial flagellin N-terminal helical region M479_1592 PF07196 Flagellin hook IN motif M479_1592 PF07195 Flagellar hook-associated protein 2 C-terminus M479_1592 PF02465 Flagellar hook-associated protein 2 N-terminus M479_1593 PF02561 Flagellar protein FliS M479_1594 PF05400 Flagellar protein FliT M479_1595 PF12833 Helix-turn-helix domain M479_1596 PF01966 HD domain M479_1597 PF00730 HhH-GPD superfamily base excision DNA repair protein M479_16 PF00294 pfkB family carbohydrate kinase M479_160 PF02597 ThiS family M479_1600 PF02049 Flagellar hook-basal body complex protein FliE M479_1601 PF08345 Flagellar M-ring protein C-terminal M479_1601 PF01514 Secretory protein of YscJ/FliF family M479_1602 PF01706 FliG C-terminal domain M479_1602 PF14841 FliG middle domain M479_1602 PF14842 FliG N-terminal domain M479_1603 PF02108 Flagellar assembly protein FliH M479_1604 PF18269 T3SS EscN ATPase C-terminal domain M479_1604 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain M479_1605 PF02050 Flagellar FliJ protein M479_1606 PF02120 Flagellar hook-length control protein FliK M479_1607 PF03748 Flagellar basal body-associated protein FliL M479_1608 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term M479_1608 PF02154 Flagellar motor switch protein FliM M479_1609 PF16973 Flagellar motor switch protein FliN N-terminal M479_1609 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term M479_161 PF02391 MoaE protein M479_1610 PF04347 Flagellar biosynthesis protein, FliO M479_1611 PF00813 FliP family M479_1612 PF01313 Bacterial export proteins, family 3 M479_1613 PF01311 Bacterial export proteins, family 1 M479_1616 PF00294 pfkB family carbohydrate kinase M479_1617 PF02653 Branched-chain amino acid transport system / permease component M479_1618 PF00005 ABC transporter M479_1619 PF13407 Periplasmic binding protein domain M479_162 PF01027 Inhibitor of apoptosis-promoting Bax1 M479_1620 PF02653 Branched-chain amino acid transport system / permease component M479_1621 PF00596 Class II Aldolase and Adducin N-terminal domain M479_1622 PF04198 Putative sugar-binding domain M479_1623 PF00669 Bacterial flagellin N-terminal helical region M479_1624 PF06429 Flagellar basal body rod FlgEFG protein C-terminal M479_1624 PF00460 Flagella basal body rod protein M479_1625 PF10135 Rod binding protein M479_1625 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase M479_1626 PF02119 Flagellar P-ring protein M479_1627 PF02107 Flagellar L-ring protein M479_1628 PF06429 Flagellar basal body rod FlgEFG protein C-terminal M479_1628 PF00460 Flagella basal body rod protein M479_1629 PF00460 Flagella basal body rod protein M479_1629 PF06429 Flagellar basal body rod FlgEFG protein C-terminal M479_163 PF01797 Transposase IS200 like M479_1630 PF07559 Flagellar basal body protein FlaE M479_1630 PF00460 Flagella basal body rod protein M479_1630 PF06429 Flagellar basal body rod FlgEFG protein C-terminal M479_1631 PF13860 FlgD Ig-like domain M479_1631 PF13861 FlgD Tudor-like domain M479_1631 PF03963 Flagellar hook capping protein - N-terminal region M479_1632 PF00460 Flagella basal body rod protein M479_1632 PF06429 Flagellar basal body rod FlgEFG protein C-terminal M479_1633 PF00460 Flagella basal body rod protein M479_1634 PF13144 Chaperone for flagella basal body P-ring formation M479_1634 PF17656 FlgA N-terminal domain M479_1635 PF04316 Anti-sigma-28 factor, FlgM M479_1636 PF05130 FlgN protein M479_1637 PF07979 Intimin C-type lectin domain M479_1637 PF11924 Inverse autotransporter, beta-domain M479_1637 PF02369 Bacterial Ig-like domain (group 1) M479_1637 PF09134 Invasin, domain 3 M479_1639 PF11924 Inverse autotransporter, beta-domain M479_1639 PF07979 Intimin C-type lectin domain M479_1639 PF09134 Invasin, domain 3 M479_1639 PF02369 Bacterial Ig-like domain (group 1) M479_164 PF05199 GMC oxidoreductase M479_164 PF00732 GMC oxidoreductase M479_1640 PF06366 Flagellar protein FlhE M479_1641 PF00771 FHIPEP family M479_1642 PF01312 FlhB HrpN YscU SpaS Family M479_1645 PF10709 Protein of unknown function (DUF2511) M479_1647 PF04234 CopC domain M479_1648 PF00210 Ferritin-like domain M479_1649 PF06440 DNA polymerase III, theta subunit M479_165 PF00171 Aldehyde dehydrogenase family M479_1650 PF00561 alpha/beta hydrolase fold M479_1651 PF00326 Prolyl oligopeptidase family M479_1651 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain M479_1652 PF13995 YebF-like protein M479_1654 PF07130 YebG protein M479_1655 PF00271 Helicase conserved C-terminal domain M479_1655 PF00270 DEAD/DEAH box helicase M479_1655 PF03880 DbpA RNA binding domain M479_1656 PF02222 ATP-grasp domain M479_1657 PF03701 Uncharacterised protein family (UPF0181) M479_1658 PF00425 chorismate binding enzyme M479_1658 PF04715 Anthranilate synthase component I, N terminal region M479_1659 PF00293 NUDIX domain M479_166 PF00440 Bacterial regulatory proteins, tetR family M479_166 PF13977 BetI-type transcriptional repressor, C-terminal M479_1660 PF03313 Serine dehydratase alpha chain M479_1660 PF03315 Serine dehydratase beta chain M479_1661 PF01613 Flavin reductase like domain M479_1662 PF03241 4-hydroxyphenylacetate 3-hydroxylase C terminal M479_1662 PF11794 4-hydroxyphenylacetate 3-hydroxylase N terminal M479_1663 PF07690 Major Facilitator Superfamily M479_1664 PF03328 HpcH/HpaI aldolase/citrate lyase family M479_1665 PF01557 Fumarylacetoacetate (FAA) hydrolase family M479_1666 PF02962 5-carboxymethyl-2-hydroxymuconate isomerase M479_1667 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase M479_1668 PF00171 Aldehyde dehydrogenase family M479_1669 PF01557 Fumarylacetoacetate (FAA) hydrolase family M479_167 PF02028 BCCT, betaine/carnitine/choline family transporter M479_1670 PF01557 Fumarylacetoacetate (FAA) hydrolase family M479_1671 PF01047 MarR family M479_1672 PF03471 Transporter associated domain M479_1672 PF03741 Integral membrane protein TerC family M479_1673 PF03610 PTS system fructose IIA component M479_1673 PF03830 PTS system sorbose subfamily IIB component M479_1674 PF03609 PTS system sorbose-specific iic component M479_1675 PF03613 PTS system mannose/fructose/sorbose family IID component M479_1676 PF06173 Protein of unknown function (DUF986) M479_1677 PF02659 Putative manganese efflux pump M479_1678 PF07715 TonB-dependent Receptor Plug Domain M479_1678 PF00593 TonB dependent receptor M479_1679 PF00563 EAL domain M479_1679 PF13426 PAS domain M479_1679 PF00990 Diguanylate cyclase, GGDEF domain M479_1679 PF05231 MASE1 M479_1679 PF08448 PAS fold M479_1679 PF08447 PAS fold M479_168 PF03466 LysR substrate binding domain M479_168 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M479_1681 PF13847 Methyltransferase domain M479_1683 PF00313 'Cold-shock' DNA-binding domain M479_1685 PF07017 Antimicrobial peptide resistance and lipid A acylation protein PagP M479_1686 PF00324 Amino acid permease M479_1689 PF13974 YebO-like protein M479_1690 PF13996 YobH-like protein M479_1691 PF10964 Protein of unknown function (DUF2766) M479_1693 PF12833 Helix-turn-helix domain M479_1695 PF00005 ABC transporter M479_1695 PF00664 ABC transporter transmembrane region M479_1696 PF01797 Transposase IS200 like M479_1699 PF06167 Glucose-regulated metallo-peptidase M90 M479_17 PF01261 Xylose isomerase-like TIM barrel M479_170 PF01048 Phosphorylase superfamily M479_1701 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family M479_1701 PF00356 Bacterial regulatory proteins, lacI family M479_1702 PF01306 LacY proton/sugar symporter M479_1703 PF16874 Glycosyl hydrolase family 36 C-terminal domain M479_1703 PF16875 Glycosyl hydrolase family 36 N-terminal domain M479_1706 PF01648 4'-phosphopantetheinyl transferase superfamily M479_1706 PF17837 4'-phosphopantetheinyl transferase N-terminal domain M479_1707 PF03480 Bacterial extracellular solute-binding protein, family 7 M479_1709 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component M479_171 PF03825 Nucleoside H+ symporter M479_1710 PF00072 Response regulator receiver domain M479_1710 PF00196 Bacterial regulatory proteins, luxR family M479_1712 PF09831 Uncharacterized protein conserved in bacteria (DUF2058) M479_1714 PF01522 Polysaccharide deacetylase M479_1716 PF01554 MatE M479_1717 PF00764 Arginosuccinate synthase M479_1718 PF01070 FMN-dependent dehydrogenase M479_1720 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain M479_1720 PF13378 Enolase C-terminal domain-like M479_1721 PF01557 Fumarylacetoacetate (FAA) hydrolase family M479_1723 PF04134 Protein of unknown function, DUF393 M479_1724 PF07690 Major Facilitator Superfamily M479_1725 PF00872 Transposase, Mutator family M479_1726 PF02369 Bacterial Ig-like domain (group 1) M479_1726 PF09134 Invasin, domain 3 M479_1726 PF11924 Inverse autotransporter, beta-domain M479_1727 PF04363 Protein of unknown function (DUF496) M479_1729 PF00929 Exonuclease M479_1729 PF08411 Exonuclease C-terminal M479_1730 PF13520 Amino acid permease M479_1732 PF00465 Iron-containing alcohol dehydrogenase M479_1733 PF00005 ABC transporter M479_1734 PF00005 ABC transporter M479_1735 PF02653 Branched-chain amino acid transport system / permease component M479_1737 PF01370 NAD dependent epimerase/dehydratase family M479_1738 PF01634 ATP phosphoribosyltransferase M479_1738 PF08029 HisG, C-terminal domain M479_1739 PF00815 Histidinol dehydrogenase M479_174 PF01207 Dihydrouridine synthase (Dus) M479_1740 PF00155 Aminotransferase class I and II M479_1741 PF00475 Imidazoleglycerol-phosphate dehydratase M479_1742 PF00117 Glutamine amidotransferase class-I M479_1743 PF00977 Histidine biosynthesis protein M479_1744 PF00977 Histidine biosynthesis protein M479_1745 PF01502 Phosphoribosyl-AMP cyclohydrolase M479_1745 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase M479_1746 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain M479_1746 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase M479_1747 PF00483 Nucleotidyl transferase M479_1748 PF00483 Nucleotidyl transferase M479_1749 PF04183 IucA / IucC family M479_1749 PF06276 Ferric iron reductase FhuF-like transporter M479_1750 PF00593 TonB dependent receptor M479_1750 PF07660 Secretin and TonB N terminus short domain M479_1750 PF07715 TonB-dependent Receptor Plug Domain M479_1751 PF01497 Periplasmic binding protein M479_1752 PF01032 FecCD transport family M479_1753 PF01032 FecCD transport family M479_1754 PF00005 ABC transporter M479_1755 PF06276 Ferric iron reductase FhuF-like transporter M479_1755 PF04183 IucA / IucC family M479_1757 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) M479_1758 PF00282 Pyridoxal-dependent decarboxylase conserved domain M479_1759 PF06276 Ferric iron reductase FhuF-like transporter M479_1759 PF11575 FhuF 2Fe-2S C-terminal domain M479_176 PF00768 D-alanyl-D-alanine carboxypeptidase M479_1760 PF03741 Integral membrane protein TerC family M479_1760 PF03471 Transporter associated domain M479_1760 PF00571 CBS domain M479_1761 PF05170 AsmA family M479_1762 PF00692 dUTPase M479_1763 PF00485 Phosphoribulokinase / Uridine kinase family M479_1764 PF10609 NUBPL iron-transfer P-loop NTPase M479_1765 PF01588 Putative tRNA binding domain M479_1765 PF09334 tRNA synthetases class I (M) M479_1766 PF01797 Transposase IS200 like M479_177 PF01565 FAD binding domain M479_177 PF09330 D-lactate dehydrogenase, membrane binding M479_1770 PF07690 Major Facilitator Superfamily M479_1771 PF03788 LrgA family M479_1772 PF04172 LrgB-like family M479_1773 PF08211 Cytidine and deoxycytidylate deaminase zinc-binding region M479_1773 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region M479_1774 PF03949 Malic enzyme, NAD binding domain M479_1774 PF00390 Malic enzyme, N-terminal domain M479_1775 PF02698 DUF218 domain M479_1776 PF02653 Branched-chain amino acid transport system / permease component M479_1777 PF01695 IstB-like ATP binding protein M479_1778 PF02653 Branched-chain amino acid transport system / permease component M479_1779 PF00005 ABC transporter M479_178 PF01928 CYTH domain M479_1780 PF13407 Periplasmic binding protein domain M479_1781 PF04235 Protein of unknown function (DUF418) M479_1782 PF01227 GTP cyclohydrolase I M479_1783 PF06779 Uncharacterised MFS-type transporter YbfB M479_1784 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M479_1784 PF03466 LysR substrate binding domain M479_1785 PF00107 Zinc-binding dehydrogenase M479_1785 PF08240 Alcohol dehydrogenase GroES-like domain M479_1786 PF00756 Putative esterase M479_1789 PF13533 Biotin-lipoyl like M479_179 PF01844 HNH endonuclease M479_1790 PF00005 ABC transporter M479_1792 PF03454 MoeA C-terminal region (domain IV) M479_1792 PF00994 Probable molybdopterin binding domain M479_1792 PF03453 MoeA N-terminal region (domain I and II) M479_1793 PF00899 ThiF family M479_1795 PF00005 ABC transporter M479_1795 PF12848 ABC transporter M479_18 PF04962 KduI/IolB family M479_181 PF04226 Transglycosylase associated protein M479_1814 PF10431 C-terminal, D2-small domain, of ClpB protein M479_1814 PF07724 AAA domain (Cdc48 subfamily) M479_1814 PF00004 ATPase family associated with various cellular activities (AAA) M479_1814 PF17871 AAA lid domain M479_1816 PF05736 OprF membrane domain M479_1816 PF00691 OmpA family M479_182 PF00005 ABC transporter M479_1822 PF00698 Acyl transferase domain M479_1823 PF00550 Phosphopantetheine attachment site M479_1826 PF00378 Enoyl-CoA hydratase/isomerase M479_1828 PF08540 Hydroxymethylglutaryl-coenzyme A synthase C terminal M479_1828 PF01154 Hydroxymethylglutaryl-coenzyme A synthase N terminal M479_1830 PF02801 Beta-ketoacyl synthase, C-terminal domain M479_1830 PF00109 Beta-ketoacyl synthase, N-terminal domain M479_1831 PF07977 FabA-like domain M479_1834 PF01565 FAD binding domain M479_1834 PF08031 Berberine and berberine like M479_1838 PF13610 DDE domain M479_184 PF00528 Binding-protein-dependent transport system inner membrane component M479_1840 PF04358 DsrC like protein M479_1841 PF00708 Acylphosphatase M479_1842 PF17785 PUA-like domain M479_1842 PF10672 S-adenosylmethionine-dependent methyltransferase M479_1843 PF08755 Hemimethylated DNA-binding protein YccV like M479_1844 PF13380 CoA binding domain M479_1845 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) M479_1846 PF02142 MGS-like domain M479_1847 PF12462 DNA helicase IV / RNA helicase N terminal M479_1847 PF00580 UvrD/REP helicase N-terminal domain M479_1847 PF13361 UvrD-like helicase C-terminal domain M479_1848 PF03733 Inner membrane component domain M479_1849 PF12805 FUSC-like inner membrane protein yccS M479_185 PF00528 Binding-protein-dependent transport system inner membrane component M479_1850 PF04993 TfoX N-terminal domain M479_1850 PF04994 TfoX C-terminal domain M479_1851 PF03846 Cell division inhibitor SulA M479_1852 PF01389 OmpA-like transmembrane domain M479_1852 PF00691 OmpA family M479_1853 PF01797 Transposase IS200 like M479_1854 PF06303 MatP N-terminal domain M479_1854 PF17414 MatP C-terminal ribbon-helix-helix domain M479_1855 PF13654 AAA domain M479_1855 PF05362 Lon protease (S16) C-terminal proteolytic domain M479_1856 PF07977 FabA-like domain M479_1858 PF00109 Beta-ketoacyl synthase, N-terminal domain M479_1858 PF02801 Beta-ketoacyl synthase, C-terminal domain M479_1859 PF01695 IstB-like ATP binding protein M479_186 PF07308 Protein of unknown function (DUF1456) M479_1860 PF00109 Beta-ketoacyl synthase, N-terminal domain M479_1860 PF02801 Beta-ketoacyl synthase, C-terminal domain M479_1861 PF01797 Transposase IS200 like M479_1862 PF01648 4'-phosphopantetheinyl transferase superfamily M479_1863 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ M479_1864 PF11967 Recombination protein O N terminal M479_1864 PF02565 Recombination protein O C terminal M479_1865 PF01926 50S ribosome-binding GTPase M479_1865 PF07650 KH domain M479_1866 PF14622 Ribonuclease-III-like M479_1866 PF00035 Double-stranded RNA binding motif M479_1867 PF10502 Signal peptidase, peptidase S26 M479_1868 PF06421 GTP-binding protein LepA C-terminus M479_1868 PF03144 Elongation factor Tu domain 2 M479_1868 PF00679 Elongation factor G C-terminus M479_1868 PF00009 Elongation factor Tu GTP binding domain M479_187 PF02954 Bacterial regulatory protein, Fis family M479_187 PF13188 PAS domain M479_187 PF00158 Sigma-54 interaction domain M479_1871 PF03888 MucB/RseB N-terminal domain M479_1871 PF17188 MucB/RseB C-terminal domain M479_1872 PF03873 Anti sigma-E protein RseA, C-terminal domain M479_1872 PF03872 Anti sigma-E protein RseA, N-terminal domain M479_1873 PF08281 Sigma-70, region 4 M479_1873 PF04542 Sigma-70 region 2 M479_1874 PF00890 FAD binding domain M479_1874 PF02910 Fumarate reductase flavoprotein C-term M479_1875 PF05175 Methyltransferase small domain M479_1876 PF00271 Helicase conserved C-terminal domain M479_1876 PF00270 DEAD/DEAH box helicase M479_1878 PF12796 Ankyrin repeats (3 copies) M479_188 PF02653 Branched-chain amino acid transport system / permease component M479_1881 PF01228 Glycine radical M479_1882 PF03167 Uracil DNA glycosylase superfamily M479_1883 PF01470 Pyroglutamyl peptidase M479_1886 PF03746 LamB/YcsF family M479_1887 PF02626 Carboxyltransferase domain, subdomain A and B M479_1888 PF02682 Carboxyltransferase domain, subdomain C and D M479_189 PF02653 Branched-chain amino acid transport system / permease component M479_1890 PF01784 NIF3 (NGG1p interacting factor 3) M479_1891 PF02112 cAMP phosphodiesterases class-II M479_1892 PF03441 FAD binding domain of DNA photolyase M479_1892 PF00875 DNA photolyase M479_1893 PF08349 Protein of unknown function (DUF1722) M479_1894 PF10725 Protein of unknown function (DUF2517) M479_1895 PF03814 Potassium-transporting ATPase A subunit M479_1897 PF02669 K+-transporting ATPase, c chain M479_1898 PF13493 Domain of unknown function (DUF4118) M479_1898 PF13492 GAF domain M479_1898 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M479_1898 PF00512 His Kinase A (phospho-acceptor) domain M479_1898 PF02702 Osmosensitive K+ channel His kinase sensor domain M479_1899 PF13492 GAF domain M479_1899 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M479_1899 PF13493 Domain of unknown function (DUF4118) M479_1899 PF00512 His Kinase A (phospho-acceptor) domain M479_1899 PF02702 Osmosensitive K+ channel His kinase sensor domain M479_190 PF00005 ABC transporter M479_1900 PF00486 Transcriptional regulatory protein, C terminal M479_1900 PF00072 Response regulator receiver domain M479_1904 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain M479_1904 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III M479_1904 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II M479_1904 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I M479_1905 PF03925 SeqA protein C-terminal domain M479_1905 PF17206 SeqA protein N-terminal domain M479_1908 PF04794 YdjC-like protein M479_1909 PF12833 Helix-turn-helix domain M479_1909 PF07883 Cupin domain M479_191 PF00005 ABC transporter M479_1910 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit M479_1911 PF02378 Phosphotransferase system, EIIC M479_1912 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit M479_1913 PF02537 CrcB-like protein, Camphor Resistance (CrcB) M479_1914 PF02537 CrcB-like protein, Camphor Resistance (CrcB) M479_1915 PF07885 Ion channel M479_1915 PF02254 TrkA-N domain M479_1916 PF06411 HdeA/HdeB family M479_1917 PF03824 High-affinity nickel-transport protein M479_1918 PF03253 Urea transporter M479_1919 PF01774 UreD urease accessory protein M479_1920 PF02492 CobW/HypB/UreG, nucleotide-binding domain M479_1921 PF01730 UreF M479_1922 PF05194 UreE urease accessory protein, C-terminal domain M479_1922 PF02814 UreE urease accessory protein, N-terminal domain M479_1923 PF00449 Urease alpha-subunit, N-terminal domain M479_1923 PF01979 Amidohydrolase family M479_1924 PF00699 Urease beta subunit M479_1925 PF00547 Urease, gamma subunit M479_1927 PF00005 ABC transporter M479_1928 PF00005 ABC transporter M479_1929 PF12911 N-terminal TM domain of oligopeptide transport permease C M479_1929 PF00528 Binding-protein-dependent transport system inner membrane component M479_1930 PF00528 Binding-protein-dependent transport system inner membrane component M479_1931 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle M479_1932 PF00313 'Cold-shock' DNA-binding domain M479_1934 PF06711 Protein of unknown function (DUF1198) M479_1935 PF09400 Protein of unknown function (DUF2002) M479_1936 PF06392 Acid shock protein repeat M479_1938 PF07972 NrdI Flavodoxin like M479_1939 PF02867 Ribonucleotide reductase, barrel domain M479_1939 PF00317 Ribonucleotide reductase, all-alpha domain M479_1939 PF08343 Ribonucleotide reductase N-terminal M479_194 PF00581 Rhodanese-like domain M479_1940 PF00268 Ribonucleotide reductase, small chain M479_1941 PF00571 CBS domain M479_1941 PF00005 ABC transporter M479_1942 PF00528 Binding-protein-dependent transport system inner membrane component M479_1943 PF04069 Substrate binding domain of ABC-type glycine betaine transport system M479_1945 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin M479_1947 PF00929 Exonuclease M479_1948 PF00075 RNase H M479_1949 PF08241 Methyltransferase domain M479_195 PF04069 Substrate binding domain of ABC-type glycine betaine transport system M479_1950 PF00753 Metallo-beta-lactamase superfamily M479_1950 PF16123 Hydroxyacylglutathione hydrolase C-terminus M479_1951 PF01464 Transglycosylase SLT domain M479_1951 PF01476 LysM domain M479_1952 PF03372 Endonuclease/Exonuclease/phosphatase family M479_1954 PF00248 Aldo/keto reductase family M479_196 PF00528 Binding-protein-dependent transport system inner membrane component M479_1961 PF00005 ABC transporter M479_1961 PF09383 NIL domain M479_1962 PF00528 Binding-protein-dependent transport system inner membrane component M479_1963 PF03180 NLPA lipoprotein M479_1964 PF16358 RcsF lipoprotein M479_1965 PF18389 TrmO C-terminal domain M479_1965 PF01980 tRNA-methyltransferase O M479_1966 PF04073 Aminoacyl-tRNA editing domain M479_1966 PF03129 Anticodon binding domain M479_1966 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) M479_1967 PF04170 NlpE N-terminal domain M479_1967 PF17185 NlpE C-terminal OB domain M479_1968 PF00472 RF-1 domain M479_1969 PF07152 YaeQ protein M479_197 PF00005 ABC transporter M479_1970 PF06786 Uncharacterised protein family (UPF0253) M479_1971 PF07073 Modulator of Rho-dependent transcription termination (ROF) M479_1972 PF00034 Cytochrome c M479_1973 PF11734 TilS substrate C-terminal domain M479_1973 PF01171 PP-loop family M479_1973 PF09179 TilS substrate binding domain M479_1974 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily M479_1975 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit M479_1976 PF07733 Bacterial DNA polymerase III alpha NTPase domain M479_1976 PF14579 Helix-hairpin-helix motif M479_1976 PF02811 PHP domain M479_1976 PF17657 Bacterial DNA polymerase III alpha subunit finger domain M479_1976 PF01336 OB-fold nucleic acid binding domain M479_1977 PF01351 Ribonuclease HII M479_1978 PF02684 Lipid-A-disaccharide synthetase M479_1979 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 M479_1979 PF00132 Bacterial transferase hexapeptide (six repeats) M479_198 PF00528 Binding-protein-dependent transport system inner membrane component M479_1980 PF07977 FabA-like domain M479_1981 PF00132 Bacterial transferase hexapeptide (six repeats) M479_1981 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD M479_1982 PF03938 Outer membrane protein (OmpH-like) M479_1983 PF01103 Surface antigen M479_1983 PF07244 Surface antigen variable number repeat M479_1984 PF02163 Peptidase family M50 M479_1984 PF17820 PDZ domain M479_1986 PF01255 Putative undecaprenyl diphosphate synthase M479_1987 PF13288 DXP reductoisomerase C-terminal domain M479_1987 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain M479_1987 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase M479_1988 PF01765 Ribosome recycling factor M479_1989 PF00696 Amino acid kinase family M479_199 PF13520 Amino acid permease M479_1990 PF00889 Elongation factor TS M479_1991 PF00318 Ribosomal protein S2 M479_1992 PF00557 Metallopeptidase family M24 M479_1993 PF08335 GlnD PII-uridylyltransferase M479_1993 PF01842 ACT domain M479_1993 PF01909 Nucleotidyltransferase domain M479_1993 PF01966 HD domain M479_1994 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal M479_1994 PF14602 Hexapeptide repeat of succinyl-transferase M479_1994 PF00132 Bacterial transferase hexapeptide (six repeats) M479_1995 PF11944 Protein of unknown function (DUF3461) M479_1996 PF00258 Flavodoxin M479_1997 PF00849 RNA pseudouridylate synthase M479_1998 PF04287 tRNA pseudouridine synthase C M479_1999 PF01797 Transposase IS200 like M479_2 PF00912 Transglycosylase M479_2 PF00905 Penicillin binding protein transpeptidase domain M479_2 PF06832 Penicillin-Binding Protein C-terminus Family M479_20 PF00664 ABC transporter transmembrane region M479_20 PF00005 ABC transporter M479_200 PF01276 Orn/Lys/Arg decarboxylase, major domain M479_200 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain M479_200 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain M479_2000 PF07348 Syd protein (SUKH-2) M479_2001 PF14489 QueF-like protein M479_2001 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term M479_2002 PF03641 Possible lysine decarboxylase M479_2002 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases M479_2002 PF11892 Domain of unknown function (DUF3412) M479_2003 PF01367 5'-3' exonuclease, C-terminal SAM fold M479_2003 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain M479_2004 PF01728 FtsJ-like methyltransferase M479_2004 PF18125 RlmM ferredoxin-like domain M479_2005 PF04241 Protein of unknown function (DUF423) M479_2006 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M479_2006 PF03466 LysR substrate binding domain M479_2008 PF00266 Aminotransferase class-V M479_2009 PF02657 Fe-S metabolism associated domain M479_201 PF00872 Transposase, Mutator family M479_2010 PF00899 ThiF family M479_2011 PF06725 3D domain M479_2011 PF03562 MltA specific insert domain M479_2014 PF11741 AMIN domain M479_2014 PF01520 N-acetylmuramoyl-L-alanine amidase M479_2015 PF00696 Amino acid kinase family M479_2015 PF00583 Acetyltransferase (GNAT) family M479_2016 PF00665 Integrase core domain M479_2016 PF02796 Helix-turn-helix domain of resolvase M479_2017 PF01695 IstB-like ATP binding protein M479_2018 PF00696 Amino acid kinase family M479_2018 PF00583 Acetyltransferase (GNAT) family M479_2019 PF13538 UvrD-like helicase C-terminal domain M479_202 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain M479_202 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain M479_202 PF01276 Orn/Lys/Arg decarboxylase, major domain M479_2020 PF13361 UvrD-like helicase C-terminal domain M479_2020 PF12705 PD-(D/E)XK nuclease superfamily M479_2020 PF00580 UvrD/REP helicase N-terminal domain M479_2021 PF00675 Insulinase (Peptidase family M16) M479_2021 PF16187 Middle or third domain of peptidase_M16 M479_2021 PF05193 Peptidase M16 inactive domain M479_2022 PF17946 RecC C-terminal domain M479_2028 PF00303 Thymidylate synthase M479_2029 PF01790 Prolipoprotein diacylglyceryl transferase M479_2030 PF01590 GAF domain M479_2030 PF00391 PEP-utilising enzyme, mobile domain M479_2030 PF05524 PEP-utilising enzyme, N-terminal M479_2030 PF02896 PEP-utilising enzyme, TIM barrel domain M479_2031 PF00293 NUDIX domain M479_2032 PF02976 DNA mismatch repair enzyme MutH M479_2033 PF00248 Aldo/keto reductase family M479_2036 PF07690 Major Facilitator Superfamily M479_2037 PF00501 AMP-binding enzyme M479_2037 PF01553 Acyltransferase M479_2037 PF13193 AMP-binding enzyme C-terminal domain M479_2038 PF00384 Molybdopterin oxidoreductase M479_2038 PF01568 Molydopterin dinucleotide binding domain M479_2039 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain M479_2039 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain M479_204 PF00892 EamA-like transporter family M479_2040 PF00356 Bacterial regulatory proteins, lacI family M479_2041 PF07690 Major Facilitator Superfamily M479_2042 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M479_2042 PF03466 LysR substrate binding domain M479_2043 PF03466 LysR substrate binding domain M479_2043 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M479_2045 PF02203 Tar ligand binding domain homologue M479_2045 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain M479_2045 PF00672 HAMP domain M479_2049 PF00872 Transposase, Mutator family M479_205 PF00267 Gram-negative porin M479_2051 PF01478 Type IV leader peptidase family M479_2051 PF06750 Bacterial Peptidase A24 N-terminal domain M479_2059 PF07963 Prokaryotic N-terminal methylation motif M479_2059 PF08334 Type II secretion system (T2SS), protein G M479_206 PF06733 DEAD_2 M479_206 PF13307 Helicase C-terminal domain M479_2060 PF00482 Type II secretion system (T2SS), protein F M479_2063 PF00263 Bacterial type II and III secretion system protein M479_2063 PF03958 Bacterial type II/III secretion system short domain M479_2066 PF00484 Carbonic anhydrase M479_207 PF00199 Catalase M479_207 PF06628 Catalase-related immune-responsive M479_2070 PF02884 Polysaccharide lyase family 8, C-terminal beta-sandwich domain M479_2070 PF02278 Polysaccharide lyase family 8, super-sandwich domain M479_2070 PF09092 Lyase, N terminal M479_2070 PF09093 Lyase, catalytic M479_2071 PF01695 IstB-like ATP binding protein M479_2072 PF00665 Integrase core domain M479_2072 PF02796 Helix-turn-helix domain of resolvase M479_2074 PF00884 Sulfatase M479_2075 PF08220 DeoR-like helix-turn-helix domain M479_2075 PF00455 DeoR C terminal sensor domain M479_2076 PF08013 Tagatose 6 phosphate kinase M479_2077 PF01380 SIS domain M479_2078 PF03830 PTS system sorbose subfamily IIB component M479_2079 PF03609 PTS system sorbose-specific iic component M479_208 PF07437 YfaZ precursor M479_2080 PF03613 PTS system mannose/fructose/sorbose family IID component M479_2081 PF03610 PTS system fructose IIA component M479_2082 PF01979 Amidohydrolase family M479_2085 PF04055 Radical SAM superfamily M479_2085 PF13186 Iron-sulfur cluster-binding domain M479_2086 PF00884 Sulfatase M479_2088 PF01116 Fructose-bisphosphate aldolase class-II M479_209 PF03222 Tryptophan/tyrosine permease family M479_2091 PF00356 Bacterial regulatory proteins, lacI family M479_2092 PF07690 Major Facilitator Superfamily M479_2093 PF16338 Domain of unknown function (DUF4968) M479_2093 PF17137 Domain of unknown function (DUF5110) M479_2093 PF13802 Galactose mutarotase-like M479_2093 PF01055 Glycosyl hydrolases family 31 M479_2094 PF00356 Bacterial regulatory proteins, lacI family M479_2095 PF02264 LamB porin M479_2096 PF02378 Phosphotransferase system, EIIC M479_2096 PF00367 phosphotransferase system, EIIB M479_2097 PF08533 Beta-galactosidase C-terminal domain M479_2097 PF08532 Beta-galactosidase trimerisation domain M479_2097 PF02449 Beta-galactosidase M479_2098 PF02449 Beta-galactosidase M479_2098 PF08533 Beta-galactosidase C-terminal domain M479_2098 PF08532 Beta-galactosidase trimerisation domain M479_2099 PF07745 Glycosyl hydrolase family 53 M479_210 PF00994 Probable molybdopterin binding domain M479_2100 PF00528 Binding-protein-dependent transport system inner membrane component M479_2101 PF00528 Binding-protein-dependent transport system inner membrane component M479_2102 PF13416 Bacterial extracellular solute-binding protein M479_2103 PF00005 ABC transporter M479_2103 PF17912 MalK OB fold domain M479_2104 PF00005 ABC transporter M479_2105 PF02653 Branched-chain amino acid transport system / permease component M479_2106 PF13407 Periplasmic binding protein domain M479_2108 PF05708 Permuted papain-like amidase enzyme, YaeF/YiiX, C92 family M479_2109 PF03551 Transcriptional regulator PadR-like family M479_211 PF03974 Ecotin M479_212 PF00111 2Fe-2S iron-sulfur cluster binding domain M479_2126 PF15731 Antitoxin component of bacterial toxin-antitoxin system, MqsA M479_2127 PF15723 Motility quorum-sensing regulator, toxin of MqsA M479_213 PF00268 Ribonucleotide reductase, small chain M479_2131 PF00589 Phage integrase family M479_2131 PF13356 Arm DNA-binding domain M479_2131 PF14659 Phage integrase, N-terminal SAM-like domain M479_2133 PF00152 tRNA synthetases class II (D, K and N) M479_2133 PF01336 OB-fold nucleic acid binding domain M479_2134 PF03462 PCRF domain M479_2134 PF00472 RF-1 domain M479_2135 PF01368 DHH family M479_2135 PF02272 DHHA1 domain M479_2135 PF17768 RecJ OB domain M479_2136 PF13098 Thioredoxin-like domain M479_2136 PF10411 Disulfide bond isomerase protein N-terminus M479_2137 PF02899 Phage integrase, N-terminal SAM-like domain M479_2137 PF00589 Phage integrase family M479_2138 PF00258 Flavodoxin M479_2139 PF06123 Inner membrane protein CreD M479_214 PF02867 Ribonucleotide reductase, barrel domain M479_214 PF00317 Ribonucleotide reductase, all-alpha domain M479_214 PF03477 ATP cone domain M479_2140 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M479_2140 PF00512 His Kinase A (phospho-acceptor) domain M479_2140 PF00672 HAMP domain M479_2141 PF00072 Response regulator receiver domain M479_2141 PF00486 Transcriptional regulatory protein, C terminal M479_2142 PF03937 Flavinator of succinate dehydrogenase M479_2143 PF01571 Aminomethyltransferase folate-binding domain M479_2145 PF03006 Haemolysin-III related M479_2147 PF05658 Head domain of trimeric autotransporter adhesin M479_2147 PF13018 Extended Signal Peptide of Type V secretion system M479_2147 PF03895 YadA-like membrane anchor domain M479_2147 PF05662 Coiled stalk of trimeric autotransporter adhesin M479_2150 PF02347 Glycine cleavage system P-protein M479_2151 PF01597 Glycine cleavage H-protein M479_2152 PF01571 Aminomethyltransferase folate-binding domain M479_2152 PF08669 Glycine cleavage T-protein C-terminal barrel domain M479_2153 PF01494 FAD binding domain M479_2154 PF01494 FAD binding domain M479_2155 PF00557 Metallopeptidase family M24 M479_2155 PF05195 Aminopeptidase P, N-terminal domain M479_2156 PF03695 Uncharacterised protein family (UPF0149) M479_2157 PF05164 Cell division protein ZapA M479_2158 PF01812 5-formyltetrahydrofolate cyclo-ligase family M479_2159 PF01797 Transposase IS200 like M479_216 PF00521 DNA gyrase/topoisomerase IV, subunit A M479_216 PF03989 DNA gyrase C-terminal domain, beta-propeller M479_2160 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain M479_2160 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain M479_2160 PF01842 ACT domain M479_2161 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) M479_2162 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M479_2162 PF03466 LysR substrate binding domain M479_2163 PF04402 Protein of unknown function (DUF541) M479_2164 PF01810 LysE type translocator M479_2165 PF00924 Mechanosensitive ion channel M479_2165 PF05552 Conserved TM helix M479_2166 PF01116 Fructose-bisphosphate aldolase class-II M479_2167 PF00162 Phosphoglycerate kinase M479_2168 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain M479_2168 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain M479_217 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M479_217 PF00512 His Kinase A (phospho-acceptor) domain M479_217 PF00072 Response regulator receiver domain M479_217 PF09456 RcsC Alpha-Beta-Loop (ABL) M479_2170 PF02779 Transketolase, pyrimidine binding domain M479_2170 PF00456 Transketolase, thiamine diphosphate binding domain M479_2170 PF02780 Transketolase, C-terminal domain M479_2171 PF01435 Peptidase family M48 M479_2172 PF00355 Rieske [2Fe-2S] domain M479_2173 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain M479_2173 PF17944 Arginine decarboxylase C-terminal helical extension M479_2173 PF17810 Arginine decarboxylase helical bundle domain M479_2175 PF02773 S-adenosylmethionine synthetase, C-terminal domain M479_2175 PF02772 S-adenosylmethionine synthetase, central domain M479_2175 PF00438 S-adenosylmethionine synthetase, N-terminal domain M479_2176 PF17283 SprT-like zinc ribbon domain M479_2176 PF10263 SprT-like family M479_2177 PF04231 Endonuclease I M479_2178 PF04452 RNA methyltransferase M479_2179 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain M479_2179 PF02951 Prokaryotic glutathione synthetase, N-terminal domain M479_218 PF00072 Response regulator receiver domain M479_218 PF00196 Bacterial regulatory proteins, luxR family M479_2180 PF02622 Uncharacterized ACR, COG1678 M479_2181 PF03652 Holliday junction resolvase M479_2182 PF00795 Carbon-nitrogen hydrolase M479_2183 PF04371 Porphyromonas-type peptidyl-arginine deiminase M479_2184 PF00437 Type II/IV secretion system protein M479_2185 PF01168 Alanine racemase, N-terminal domain M479_2186 PF14748 Pyrroline-5-carboxylate reductase dimerisation M479_2186 PF03807 NADP oxidoreductase coenzyme F420-dependent M479_2187 PF02325 YGGT family M479_2188 PF02594 Uncharacterised ACR, YggU family COG1872 M479_2189 PF01725 Ham1 family M479_219 PF16359 RcsD-ABL domain M479_219 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M479_219 PF01627 Hpt domain M479_2190 PF04055 Radical SAM superfamily M479_2190 PF06969 HemN C-terminal domain M479_2191 PF16671 Actin cross-linking domain M479_2191 PF12146 Serine aminopeptidase, S33 M479_2191 PF07634 RtxA repeat M479_2191 PF11713 Peptidase C80 family M479_2191 PF11647 Membrane Localization Domain M479_2192 PF11101 Protein of unknown function (DUF2884) M479_2193 PF11101 Protein of unknown function (DUF2884) M479_2194 PF04960 Glutaminase M479_2195 PF04320 Protein with unknown function (DUF469) M479_2196 PF02390 Putative methyltransferase M479_2197 PF00730 HhH-GPD superfamily base excision DNA repair protein M479_2197 PF00633 Helix-hairpin-helix motif M479_2197 PF14815 NUDIX domain M479_2197 PF10576 Iron-sulfur binding domain of endonuclease III M479_2198 PF04362 Bacterial Fe(2+) trafficking M479_2199 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain M479_2199 PF01464 Transglycosylase SLT domain M479_220 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M479_220 PF01627 Hpt domain M479_220 PF16359 RcsD-ABL domain M479_2201 PF07715 TonB-dependent Receptor Plug Domain M479_2202 PF02653 Branched-chain amino acid transport system / permease component M479_2203 PF00005 ABC transporter M479_2204 PF13407 Periplasmic binding protein domain M479_2205 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain M479_2205 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain M479_2205 PF01276 Orn/Lys/Arg decarboxylase, major domain M479_2207 PF00589 Phage integrase family M479_2207 PF02899 Phage integrase, N-terminal SAM-like domain M479_2209 PF03400 IS1 transposase M479_221 PF07690 Major Facilitator Superfamily M479_2210 PF03811 InsA N-terminal domain M479_2210 PF12759 InsA C-terminal domain M479_2214 PF17871 AAA lid domain M479_2214 PF07724 AAA domain (Cdc48 subfamily) M479_2214 PF10431 C-terminal, D2-small domain, of ClpB protein M479_2214 PF00004 ATPase family associated with various cellular activities (AAA) M479_2216 PF00691 OmpA family M479_2216 PF05736 OprF membrane domain M479_222 PF07690 Major Facilitator Superfamily M479_2223 PF12759 InsA C-terminal domain M479_2223 PF03811 InsA N-terminal domain M479_2225 PF02517 CPBP intramembrane metalloprotease M479_2227 PF03472 Autoinducer binding domain M479_2227 PF00196 Bacterial regulatory proteins, luxR family M479_2228 PF00765 Autoinducer synthase M479_2232 PF04183 IucA / IucC family M479_2232 PF06276 Ferric iron reductase FhuF-like transporter M479_2233 PF04183 IucA / IucC family M479_2233 PF06276 Ferric iron reductase FhuF-like transporter M479_2235 PF06276 Ferric iron reductase FhuF-like transporter M479_2235 PF04183 IucA / IucC family M479_2236 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) M479_2237 PF00593 TonB dependent receptor M479_2237 PF07715 TonB-dependent Receptor Plug Domain M479_2239 PF00665 Integrase core domain M479_2239 PF13276 HTH-like domain M479_2239 PF13333 Integrase core domain M479_224 PF00267 Gram-negative porin M479_2241 PF05433 Glycine zipper 2TM domain M479_2245 PF00691 OmpA family M479_2245 PF13677 Membrane MotB of proton-channel complex MotA/MotB M479_2246 PF01618 MotA/TolQ/ExbB proton channel family M479_2247 PF04542 Sigma-70 region 2 M479_2247 PF04545 Sigma-70, region 4 M479_2252 PF02465 Flagellar hook-associated protein 2 N-terminus M479_2252 PF07196 Flagellin hook IN motif M479_2252 PF07195 Flagellar hook-associated protein 2 C-terminus M479_2253 PF00669 Bacterial flagellin N-terminal helical region M479_2253 PF00700 Bacterial flagellin C-terminal helical region M479_2254 PF00669 Bacterial flagellin N-terminal helical region M479_2254 PF00700 Bacterial flagellin C-terminal helical region M479_2255 PF00669 Bacterial flagellin N-terminal helical region M479_2255 PF00700 Bacterial flagellin C-terminal helical region M479_2256 PF00700 Bacterial flagellin C-terminal helical region M479_2256 PF00669 Bacterial flagellin N-terminal helical region M479_2257 PF18500 CadC C-terminal domain 1 M479_2257 PF00486 Transcriptional regulatory protein, C terminal M479_2261 PF06429 Flagellar basal body rod FlgEFG protein C-terminal M479_2261 PF00460 Flagella basal body rod protein M479_2263 PF02119 Flagellar P-ring protein M479_2264 PF02107 Flagellar L-ring protein M479_2265 PF00460 Flagella basal body rod protein M479_2265 PF06429 Flagellar basal body rod FlgEFG protein C-terminal M479_2266 PF00460 Flagella basal body rod protein M479_2266 PF06429 Flagellar basal body rod FlgEFG protein C-terminal M479_2267 PF07559 Flagellar basal body protein FlaE M479_2267 PF00460 Flagella basal body rod protein M479_2267 PF06429 Flagellar basal body rod FlgEFG protein C-terminal M479_2268 PF03963 Flagellar hook capping protein - N-terminal region M479_2268 PF13860 FlgD Ig-like domain M479_2268 PF13861 FlgD Tudor-like domain M479_2269 PF00460 Flagella basal body rod protein M479_2269 PF06429 Flagellar basal body rod FlgEFG protein C-terminal M479_227 PF00144 Beta-lactamase M479_2270 PF00460 Flagella basal body rod protein M479_2271 PF13144 Chaperone for flagella basal body P-ring formation M479_2275 PF18269 T3SS EscN ATPase C-terminal domain M479_2275 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain M479_2278 PF01514 Secretory protein of YscJ/FliF family M479_2278 PF08345 Flagellar M-ring protein C-terminal M479_2279 PF02049 Flagellar hook-basal body complex protein FliE M479_2280 PF02954 Bacterial regulatory protein, Fis family M479_2280 PF00158 Sigma-54 interaction domain M479_2280 PF00072 Response regulator receiver domain M479_2282 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term M479_2283 PF00813 FliP family M479_2284 PF01313 Bacterial export proteins, family 3 M479_2285 PF01311 Bacterial export proteins, family 1 M479_2286 PF01312 FlhB HrpN YscU SpaS Family M479_2287 PF00771 FHIPEP family M479_229 PF12706 Beta-lactamase superfamily domain M479_2290 PF01497 Periplasmic binding protein M479_2291 PF09222 Fimbrial adhesin F17-AG, lectin domain M479_2291 PF00419 Fimbrial protein M479_2293 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain M479_2293 PF02753 Pili assembly chaperone PapD, C-terminal domain M479_2294 PF13953 PapC C-terminal domain M479_2294 PF13954 PapC N-terminal domain M479_2294 PF00577 Outer membrane usher protein M479_2298 PF13629 Pilus formation protein N terminal region M479_2298 PF00263 Bacterial type II and III secretion system protein M479_2298 PF04972 BON domain M479_2299 PF04972 BON domain M479_2299 PF00263 Bacterial type II and III secretion system protein M479_2299 PF13629 Pilus formation protein N terminal region M479_230 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain M479_230 PF00672 HAMP domain M479_230 PF02743 Cache domain M479_2302 PF00437 Type II/IV secretion system protein M479_2309 PF02472 Biopolymer transport protein ExbD/TolR M479_231 PF01278 Omptin family M479_2311 PF01618 MotA/TolQ/ExbB proton channel family M479_2312 PF01053 Cys/Met metabolism PLP-dependent enzyme M479_2313 PF09335 SNARE associated Golgi protein M479_2314 PF06719 AraC-type transcriptional regulator N-terminus M479_2314 PF12833 Helix-turn-helix domain M479_2315 PF00465 Iron-containing alcohol dehydrogenase M479_2316 PF00248 Aldo/keto reductase family M479_2317 PF11842 Domain of unknown function (DUF3362) M479_2317 PF08497 Radical SAM N-terminal M479_2317 PF04055 Radical SAM superfamily M479_2318 PF08497 Radical SAM N-terminal M479_2318 PF04055 Radical SAM superfamily M479_2318 PF11842 Domain of unknown function (DUF3362) M479_2319 PF07732 Multicopper oxidase M479_2319 PF07731 Multicopper oxidase M479_2320 PF01553 Acyltransferase M479_2321 PF03989 DNA gyrase C-terminal domain, beta-propeller M479_2321 PF00521 DNA gyrase/topoisomerase IV, subunit A M479_2322 PF02525 Flavodoxin-like fold M479_2323 PF03466 LysR substrate binding domain M479_2323 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M479_2324 PF01751 Toprim domain M479_2324 PF00204 DNA gyrase B M479_2324 PF00986 DNA gyrase B subunit, carboxyl terminus M479_2324 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M479_2325 PF05728 Uncharacterised protein family (UPF0227) M479_2326 PF00149 Calcineurin-like phosphoesterase M479_2327 PF06853 Protein of unknown function (DUF1249) M479_2328 PF00293 NUDIX domain M479_2329 PF02321 Outer membrane efflux protein M479_233 PF06183 DinI-like family M479_2331 PF06693 Protein of unknown function (DUF1190) M479_2332 PF03738 Glutathionylspermidine synthase preATP-grasp M479_2333 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase M479_2334 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase M479_2336 PF04380 Membrane fusogenic activity M479_2337 PF13520 Amino acid permease M479_2338 PF00294 pfkB family carbohydrate kinase M479_2338 PF01467 Cytidylyltransferase-like M479_2339 PF03710 Glutamate-ammonia ligase adenylyltransferase M479_2339 PF08335 GlnD PII-uridylyltransferase M479_234 PF00717 Peptidase S24-like M479_234 PF01381 Helix-turn-helix M479_2340 PF01928 CYTH domain M479_2341 PF08239 Bacterial SH3 domain M479_2342 PF01743 Poly A polymerase head domain M479_2342 PF01966 HD domain M479_2342 PF12627 Probable RNA and SrmB- binding site of polymerase A M479_2343 PF02673 Bacitracin resistance protein BacA M479_2344 PF02152 Dihydroneopterin aldolase M479_2345 PF02660 Glycerol-3-phosphate acyltransferase M479_2346 PF00814 Glycoprotease family M479_2347 PF01165 Ribosomal protein S21 M479_2348 PF10410 DnaB-helicase binding domain of primase M479_2348 PF01807 CHC2 zinc finger M479_2348 PF08278 DNA primase DnaG DnaB-binding M479_2348 PF08275 DNA primase catalytic core, N-terminal domain M479_2349 PF04545 Sigma-70, region 4 M479_2349 PF04542 Sigma-70 region 2 M479_2349 PF00140 Sigma-70 factor, region 1.2 M479_2349 PF03979 Sigma-70 factor, region 1.1 M479_2349 PF04546 Sigma-70, non-essential region M479_2349 PF04539 Sigma-70 region 3 M479_235 PF06530 Phage antitermination protein Q M479_236 PF17042 Nucleotide-binding C-terminal domain M479_236 PF07005 Sugar-binding N-terminal domain M479_2360 PF02796 Helix-turn-helix domain of resolvase M479_2360 PF00665 Integrase core domain M479_2361 PF01695 IstB-like ATP binding protein M479_2362 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M479_2362 PF03466 LysR substrate binding domain M479_2366 PF01042 Endoribonuclease L-PSP M479_237 PF00596 Class II Aldolase and Adducin N-terminal domain M479_2373 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion M479_2373 PF00529 HlyD membrane-fusion protein of T1SS M479_2374 PF04632 Fusaric acid resistance protein family M479_2376 PF14310 Fibronectin type III-like domain M479_2376 PF00933 Glycosyl hydrolase family 3 N terminal domain M479_2376 PF01915 Glycosyl hydrolase family 3 C-terminal domain M479_2378 PF00528 Binding-protein-dependent transport system inner membrane component M479_2379 PF00528 Binding-protein-dependent transport system inner membrane component M479_238 PF00455 DeoR C terminal sensor domain M479_238 PF08220 DeoR-like helix-turn-helix domain M479_2380 PF13416 Bacterial extracellular solute-binding protein M479_2381 PF00356 Bacterial regulatory proteins, lacI family M479_2382 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain M479_2383 PF00005 ABC transporter M479_2383 PF17912 MalK OB fold domain M479_2383 PF03459 TOBE domain M479_2387 PF05860 haemagglutination activity domain M479_2387 PF04829 Pre-toxin domain with VENN motif M479_2387 PF13332 Hemagglutinin repeat M479_2387 PF13018 Extended Signal Peptide of Type V secretion system M479_2389 PF05860 haemagglutination activity domain M479_2389 PF04829 Pre-toxin domain with VENN motif M479_2389 PF13332 Hemagglutinin repeat M479_2389 PF13018 Extended Signal Peptide of Type V secretion system M479_239 PF01261 Xylose isomerase-like TIM barrel M479_2391 PF13332 Hemagglutinin repeat M479_2391 PF04829 Pre-toxin domain with VENN motif M479_2391 PF13018 Extended Signal Peptide of Type V secretion system M479_2391 PF05860 haemagglutination activity domain M479_2392 PF08479 POTRA domain, ShlB-type M479_2392 PF17287 POTRA domain M479_2392 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB M479_2393 PF00092 von Willebrand factor type A domain M479_2394 PF02342 TerD domain M479_2396 PF00092 von Willebrand factor type A domain M479_2399 PF03729 Short repeat of unknown function (DUF308) M479_2400 PF07992 Pyridine nucleotide-disulphide oxidoreductase M479_2400 PF00724 NADH:flavin oxidoreductase / NADH oxidase family M479_2401 PF05175 Methyltransferase small domain M479_2402 PF03797 Autotransporter beta-domain M479_2403 PF01863 Protein of unknown function DUF45 M479_2404 PF01408 Oxidoreductase family, NAD-binding Rossmann fold M479_2405 PF00375 Sodium:dicarboxylate symporter family M479_2407 PF01797 Transposase IS200 like M479_2408 PF10688 Bacterial inner membrane protein M479_2409 PF08666 SAF domain M479_2409 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus M479_2410 PF08125 Mannitol dehydrogenase C-terminal domain M479_2410 PF01232 Mannitol dehydrogenase Rossmann domain M479_2411 PF02614 Glucuronate isomerase M479_2412 PF07690 Major Facilitator Superfamily M479_2413 PF07690 Major Facilitator Superfamily M479_2414 PF07729 FCD domain M479_2414 PF00392 Bacterial regulatory proteins, gntR family M479_2416 PF09335 SNARE associated Golgi protein M479_2417 PF13721 SecD export protein N-terminal TM region M479_2419 PF05957 Bacterial protein of unknown function (DUF883) M479_2420 PF07332 Putative Actinobacterial Holin-X, holin superfamily III M479_2422 PF07681 DoxX M479_2423 PF13409 Glutathione S-transferase, N-terminal domain M479_2424 PF03466 LysR substrate binding domain M479_2424 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M479_2425 PF02678 Pirin M479_2425 PF17954 Quercetinase C-terminal cupin domain M479_2426 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases M479_2427 PF04348 LppC putative lipoprotein M479_2428 PF02021 Uncharacterised protein family UPF0102 M479_2429 PF13580 SIS domain M479_243 PF04984 Phage tail sheath protein subtilisin-like domain M479_243 PF17482 Phage tail sheath C-terminal domain M479_2430 PF04972 BON domain M479_2431 PF00912 Transglycosylase M479_2433 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M479_2433 PF00072 Response regulator receiver domain M479_2433 PF00512 His Kinase A (phospho-acceptor) domain M479_2433 PF00989 PAS fold M479_2433 PF01627 Hpt domain M479_2433 PF18415 Histidine kinase receptor ArcB trans-membrane domain M479_2434 PF16199 Radical_SAM C-terminal domain M479_2434 PF04055 Radical SAM superfamily M479_2435 PF01493 GXGXG motif M479_2435 PF04898 Glutamate synthase central domain M479_2435 PF01645 Conserved region in glutamate synthase M479_2435 PF00310 Glutamine amidotransferases class-II M479_2436 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster M479_2436 PF07992 Pyridine nucleotide-disulphide oxidoreductase M479_2438 PF04386 Stringent starvation protein B M479_2439 PF02798 Glutathione S-transferase, N-terminal domain M479_2439 PF00043 Glutathione S-transferase, C-terminal domain M479_2440 PF00380 Ribosomal protein S9/S16 M479_2441 PF00572 Ribosomal protein L13 M479_2442 PF03969 AFG1-like ATPase M479_2443 PF06295 Protein of unknown function (DUF1043) M479_2444 PF13180 PDZ domain M479_2444 PF00595 PDZ domain M479_2445 PF01797 Transposase IS200 like M479_2446 PF13180 PDZ domain M479_2447 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) M479_2448 PF01722 BolA-like protein M479_2449 PF13466 STAS domain M479_2450 PF05494 MlaC protein M479_2451 PF02470 MlaD protein M479_2452 PF02405 Permease MlaE M479_2453 PF00005 ABC transporter M479_2454 PF01699 Sodium/calcium exchanger protein M479_2455 PF00571 CBS domain M479_2455 PF01380 SIS domain M479_2457 PF06835 Lipopolysaccharide-assembly, LptC-related M479_2458 PF03968 OstA-like protein M479_2459 PF12399 Branched-chain amino acid ATP-binding cassette transporter M479_2459 PF00005 ABC transporter M479_2460 PF00309 Sigma-54 factor, Activator interacting domain (AID) M479_2460 PF04963 Sigma-54 factor, core binding domain M479_2460 PF04552 Sigma-54, DNA binding domain M479_2461 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein M479_2462 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 M479_2463 PF03668 P-loop ATPase protein family M479_2464 PF00381 PTS HPr component phosphorylation site M479_2465 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain M479_2465 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain M479_2466 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain M479_2466 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain M479_2467 PF01042 Endoribonuclease L-PSP M479_2469 PF00356 Bacterial regulatory proteins, lacI family M479_2470 PF00367 phosphotransferase system, EIIB M479_2470 PF02378 Phosphotransferase system, EIIC M479_2471 PF11941 Domain of unknown function (DUF3459) M479_2471 PF00128 Alpha amylase, catalytic domain M479_2472 PF01272 Transcription elongation factor, GreA/GreB, C-term M479_2472 PF14760 Rnk N-terminus M479_2473 PF07361 Cytochrome b562 M479_2475 PF01523 Putative modulator of DNA gyrase M479_2476 PF04751 Protein of unknown function (DUF615) M479_2477 PF01337 Barstar (barnase inhibitor) M479_2479 PF00171 Aldehyde dehydrogenase family M479_2480 PF00171 Aldehyde dehydrogenase family M479_2481 PF04632 Fusaric acid resistance protein family M479_2482 PF13533 Biotin-lipoyl like M479_2483 PF07869 Protein of unknown function (DUF1656) M479_2484 PF03466 LysR substrate binding domain M479_2484 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M479_2485 PF03466 LysR substrate binding domain M479_2485 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M479_2487 PF18413 Neuraminidase-like domain M479_2487 PF18276 Tc toxin complex TcA C-terminal TcB-binding domain M479_2488 PF03534 Salmonella virulence plasmid 65kDa B protein M479_2488 PF12255 Insecticide toxin TcdB middle/C-terminal region M479_2488 PF12256 Insecticide toxin TcdB middle/N-terminal region M479_2492 PF05785 Rho-activating domain of cytotoxic necrotizing factor M479_2492 PF18807 Tripartite Tc toxins repeat M479_2493 PF05785 Rho-activating domain of cytotoxic necrotizing factor M479_2493 PF18807 Tripartite Tc toxins repeat M479_2494 PF18807 Tripartite Tc toxins repeat M479_2494 PF05785 Rho-activating domain of cytotoxic necrotizing factor M479_2495 PF01523 Putative modulator of DNA gyrase M479_2496 PF00795 Carbon-nitrogen hydrolase M479_2497 PF13116 Protein of unknown function M479_2497 PF13502 AsmA-like C-terminal region M479_2498 PF00575 S1 RNA binding domain M479_2498 PF10150 Ribonuclease E/G family M479_2499 PF02545 Maf-like protein M479_25 PF00196 Bacterial regulatory proteins, luxR family M479_2500 PF04093 rod shape-determining protein MreD M479_2501 PF04085 rod shape-determining protein MreC M479_2503 PF00990 Diguanylate cyclase, GGDEF domain M479_2503 PF00563 EAL domain M479_2503 PF17157 Gammaproteobacterial periplasmic sensor domain M479_2504 PF08240 Alcohol dehydrogenase GroES-like domain M479_2504 PF00107 Zinc-binding dehydrogenase M479_2505 PF00174 Oxidoreductase molybdopterin binding domain M479_2506 PF01794 Ferric reductase like transmembrane component M479_2507 PF01220 Dehydroquinase class II M479_2508 PF00364 Biotin-requiring enzyme M479_2509 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain M479_2509 PF02785 Biotin carboxylase C-terminal domain M479_2509 PF00289 Biotin carboxylase, N-terminal domain M479_2511 PF06196 Protein of unknown function (DUF997) M479_2512 PF00474 Sodium:solute symporter family M479_2514 PF01207 Dihydrouridine synthase (Dus) M479_2515 PF02954 Bacterial regulatory protein, Fis family M479_2518 PF07690 Major Facilitator Superfamily M479_2519 PF02627 Carboxymuconolactone decarboxylase family M479_252 PF04865 Baseplate J-like protein M479_2520 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase M479_2520 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase M479_2521 PF00753 Metallo-beta-lactamase superfamily M479_2522 PF05433 Glycine zipper 2TM domain M479_2523 PF00313 'Cold-shock' DNA-binding domain M479_2524 PF00313 'Cold-shock' DNA-binding domain M479_2525 PF01797 Transposase IS200 like M479_2528 PF02798 Glutathione S-transferase, N-terminal domain M479_2529 PF01380 SIS domain M479_2529 PF00571 CBS domain M479_2530 PF02782 FGGY family of carbohydrate kinases, C-terminal domain M479_2530 PF00370 FGGY family of carbohydrate kinases, N-terminal domain M479_2532 PF02653 Branched-chain amino acid transport system / permease component M479_2533 PF00005 ABC transporter M479_2535 PF03279 Bacterial lipid A biosynthesis acyltransferase M479_2537 PF00999 Sodium/hydrogen exchanger family M479_2538 PF00860 Permease family M479_2539 PF04221 RelB antitoxin M479_2540 PF00005 ABC transporter M479_2541 PF00528 Binding-protein-dependent transport system inner membrane component M479_2542 PF00296 Luciferase-like monooxygenase M479_2543 PF09084 NMT1/THI5 like M479_2544 PF03358 NADPH-dependent FMN reductase M479_2546 PF00294 pfkB family carbohydrate kinase M479_2547 PF05025 RbsD / FucU transport protein family M479_2548 PF12833 Helix-turn-helix domain M479_2548 PF02311 AraC-like ligand binding domain M479_2549 PF01408 Oxidoreductase family, NAD-binding Rossmann fold M479_2549 PF02894 Oxidoreductase family, C-terminal alpha/beta domain M479_255 PF07484 Phage Tail Collar Domain M479_2552 PF03527 RHS protein M479_2552 PF05593 RHS Repeat M479_2554 PF04717 Type VI secretion system, phage-baseplate injector M479_256 PF01418 Helix-turn-helix domain, rpiR family M479_256 PF01380 SIS domain M479_2560 PF14220 Domain of unknown function (DUF4329) M479_2560 PF03527 RHS protein M479_2560 PF05593 RHS Repeat M479_2563 PF04717 Type VI secretion system, phage-baseplate injector M479_2570 PF00004 ATPase family associated with various cellular activities (AAA) M479_2570 PF17871 AAA lid domain M479_2570 PF07724 AAA domain (Cdc48 subfamily) M479_2570 PF10431 C-terminal, D2-small domain, of ClpB protein M479_2579 PF13276 HTH-like domain M479_2579 PF13333 Integrase core domain M479_2579 PF00665 Integrase core domain M479_258 PF00232 Glycosyl hydrolase family 1 M479_2583 PF05638 Type VI secretion system effector, Hcp M479_2585 PF07148 Maltose operon periplasmic protein precursor (MalM) M479_2586 PF02264 LamB porin M479_2587 PF00005 ABC transporter M479_2587 PF17912 MalK OB fold domain M479_2589 PF01547 Bacterial extracellular solute-binding protein M479_2590 PF14785 Maltose transport system permease protein MalF P2 domain M479_2590 PF00528 Binding-protein-dependent transport system inner membrane component M479_2591 PF00528 Binding-protein-dependent transport system inner membrane component M479_2592 PF06146 Phosphate-starvation-inducible E M479_2593 PF00342 Phosphoglucose isomerase M479_2594 PF00696 Amino acid kinase family M479_2594 PF01842 ACT domain M479_2595 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB M479_2595 PF08479 POTRA domain, ShlB-type M479_2595 PF17287 POTRA domain M479_2596 PF05860 haemagglutination activity domain M479_2596 PF13332 Hemagglutinin repeat M479_2597 PF13332 Hemagglutinin repeat M479_2597 PF05860 haemagglutination activity domain M479_2598 PF00809 Pterin binding enzyme M479_2598 PF02574 Homocysteine S-methyltransferase M479_2598 PF02965 Vitamin B12 dependent methionine synthase, activation domain M479_2598 PF02607 B12 binding domain M479_2598 PF02310 B12 binding domain M479_2599 PF01614 Bacterial transcriptional regulator M479_2599 PF09339 IclR helix-turn-helix domain M479_26 PF00313 'Cold-shock' DNA-binding domain M479_2600 PF06315 Isocitrate dehydrogenase kinase/phosphatase (AceK) M479_2601 PF00463 Isocitrate lyase family M479_2602 PF01274 Malate synthase M479_2603 PF04204 Homoserine O-succinyltransferase M479_2613 PF00004 ATPase family associated with various cellular activities (AAA) M479_2613 PF17871 AAA lid domain M479_2613 PF10431 C-terminal, D2-small domain, of ClpB protein M479_2613 PF07724 AAA domain (Cdc48 subfamily) M479_2613 PF02861 Clp amino terminal domain, pathogenicity island component M479_2615 PF00849 RNA pseudouridylate synthase M479_2615 PF01479 S4 domain M479_2616 PF13525 Outer membrane lipoprotein M479_2617 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein M479_2618 PF00800 Prephenate dehydratase M479_2618 PF01817 Chorismate mutase type II M479_2619 PF02153 Prephenate dehydrogenase M479_2619 PF01817 Chorismate mutase type II M479_262 PF05638 Type VI secretion system effector, Hcp M479_2620 PF00793 DAHP synthetase I family M479_2621 PF01695 IstB-like ATP binding protein M479_2622 PF02796 Helix-turn-helix domain of resolvase M479_2622 PF00665 Integrase core domain M479_2623 PF00793 DAHP synthetase I family M479_2624 PF00072 Response regulator receiver domain M479_2624 PF04397 LytTr DNA-binding domain M479_2625 PF03605 Anaerobic c4-dicarboxylate membrane transporter M479_2626 PF03605 Anaerobic c4-dicarboxylate membrane transporter M479_2627 PF04338 Protein of unknown function, DUF481 M479_2628 PF01245 Ribosomal protein L19 M479_2629 PF01746 tRNA (Guanine-1)-methyltransferase M479_2630 PF05239 PRC-barrel domain M479_2630 PF01782 RimM N-terminal domain M479_2631 PF00886 Ribosomal protein S16 M479_2632 PF02881 SRP54-type protein, helical bundle domain M479_2632 PF02978 Signal peptide binding domain M479_2632 PF00448 SRP54-type protein, GTPase domain M479_2633 PF01578 Cytochrome C assembly protein M479_2634 PF03471 Transporter associated domain M479_2634 PF00571 CBS domain M479_2634 PF01595 Cyclin M transmembrane N-terminal domain M479_2635 PF02664 S-Ribosylhomocysteinase (LuxS) M479_2636 PF04262 Glutamate-cysteine ligase M479_2637 PF09335 SNARE associated Golgi protein M479_2638 PF13419 Haloacid dehalogenase-like hydrolase M479_2642 PF02599 Global regulator protein family M479_2643 PF01411 tRNA synthetases class II (A) M479_2643 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain M479_2643 PF02272 DHHA1 domain M479_2644 PF02631 RecX family M479_2645 PF00154 recA bacterial DNA recombination protein M479_2646 PF02464 Competence-damaged protein M479_2647 PF07690 Major Facilitator Superfamily M479_265 PF11893 Domain of unknown function (DUF3413) M479_265 PF00884 Sulfatase M479_2650 PF00370 FGGY family of carbohydrate kinases, N-terminal domain M479_2650 PF02782 FGGY family of carbohydrate kinases, C-terminal domain M479_2651 PF02779 Transketolase, pyrimidine binding domain M479_2651 PF02780 Transketolase, C-terminal domain M479_2652 PF00456 Transketolase, thiamine diphosphate binding domain M479_2653 PF02653 Branched-chain amino acid transport system / permease component M479_2654 PF00005 ABC transporter M479_2657 PF00141 Peroxidase M479_2658 PF07361 Cytochrome b562 M479_2659 PF01292 Prokaryotic cytochrome b561 M479_266 PF07208 Protein of unknown function (DUF1414) M479_2660 PF02613 Nitrate reductase delta subunit M479_2661 PF04976 DMSO reductase anchor subunit (DmsC) M479_2662 PF12800 4Fe-4S binding domain M479_2662 PF13247 4Fe-4S dicluster domain M479_2663 PF04879 Molybdopterin oxidoreductase Fe4S4 domain M479_2663 PF00384 Molybdopterin oxidoreductase M479_2663 PF01568 Molydopterin dinucleotide binding domain M479_2664 PF00596 Class II Aldolase and Adducin N-terminal domain M479_2665 PF08220 DeoR-like helix-turn-helix domain M479_2665 PF00455 DeoR C terminal sensor domain M479_2667 PF00005 ABC transporter M479_2668 PF02653 Branched-chain amino acid transport system / permease component M479_2669 PF02653 Branched-chain amino acid transport system / permease component M479_267 PF04245 37-kD nucleoid-associated bacterial protein M479_2670 PF01261 Xylose isomerase-like TIM barrel M479_2671 PF00370 FGGY family of carbohydrate kinases, N-terminal domain M479_2671 PF02782 FGGY family of carbohydrate kinases, C-terminal domain M479_2672 PF05681 Fumarate hydratase (Fumerase) M479_2672 PF05683 Fumarase C-terminus M479_2674 PF00557 Metallopeptidase family M24 M479_2676 PF07715 TonB-dependent Receptor Plug Domain M479_2676 PF00593 TonB dependent receptor M479_2678 PF14376 Haem-binding domain M479_2678 PF00034 Cytochrome c M479_2678 PF03150 Di-haem cytochrome c peroxidase M479_2679 PF00497 Bacterial extracellular solute-binding proteins, family 3 M479_268 PF01797 Transposase IS200 like M479_2682 PF01022 Bacterial regulatory protein, arsR family M479_2683 PF02040 Arsenical pump membrane protein M479_2684 PF13936 Helix-turn-helix domain M479_2684 PF04198 Putative sugar-binding domain M479_2685 PF02734 DAK2 domain M479_2686 PF02733 Dak1 domain M479_2688 PF00107 Zinc-binding dehydrogenase M479_2688 PF08240 Alcohol dehydrogenase GroES-like domain M479_2689 PF02502 Ribose/Galactose Isomerase M479_269 PF01386 Ribosomal L25p family M479_2690 PF01624 MutS domain I M479_2690 PF05188 MutS domain II M479_2690 PF05190 MutS family domain IV M479_2690 PF05192 MutS domain III M479_2690 PF00488 MutS domain V M479_2691 PF04542 Sigma-70 region 2 M479_2691 PF04539 Sigma-70 region 3 M479_2691 PF04545 Sigma-70, region 4 M479_2691 PF00140 Sigma-70 factor, region 1.2 M479_2692 PF01551 Peptidase family M23 M479_2692 PF01476 LysM domain M479_2694 PF01975 Survival protein SurE M479_2695 PF01142 tRNA pseudouridine synthase D (TruD) M479_2696 PF02542 YgbB family M479_2697 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase M479_2698 PF04977 Septum formation initiator M479_2699 PF12084 Protein of unknown function (DUF3561) M479_27 PF00313 'Cold-shock' DNA-binding domain M479_270 PF04851 Type III restriction enzyme, res subunit M479_270 PF00271 Helicase conserved C-terminal domain M479_2701 PF00009 Elongation factor Tu GTP binding domain M479_2702 PF01507 Phosphoadenosine phosphosulfate reductase family M479_2703 PF14824 Sirohaem biosynthesis protein central M479_2703 PF10414 Sirohaem synthase dimerisation region M479_2703 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases M479_2707 PF01507 Phosphoadenosine phosphosulfate reductase family M479_2708 PF01507 Phosphoadenosine phosphosulfate reductase family M479_2709 PF01077 Nitrite and sulphite reductase 4Fe-4S domain M479_2709 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain M479_271 PF00849 RNA pseudouridylate synthase M479_271 PF01479 S4 domain M479_2710 PF00258 Flavodoxin M479_2710 PF00175 Oxidoreductase NAD-binding domain M479_2710 PF00667 FAD binding domain M479_2711 PF01242 6-pyruvoyl tetrahydropterin synthase M479_2712 PF04055 Radical SAM superfamily M479_2713 PF00080 Copper/zinc superoxide dismutase (SODC) M479_2714 PF03952 Enolase, N-terminal domain M479_2714 PF00113 Enolase, C-terminal TIM barrel domain M479_2715 PF06418 CTP synthase N-terminus M479_2715 PF00117 Glutamine amidotransferase class-I M479_2716 PF03819 MazG nucleotide pyrophosphohydrolase domain M479_2717 PF13291 ACT domain M479_2717 PF04607 Region found in RelA / SpoT proteins M479_2717 PF02824 TGS domain M479_2718 PF00072 Response regulator receiver domain M479_2718 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) M479_2718 PF00672 HAMP domain M479_2718 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M479_2718 PF00512 His Kinase A (phospho-acceptor) domain M479_2718 PF01627 Hpt domain M479_2719 PF00595 PDZ domain M479_272 PF07690 Major Facilitator Superfamily M479_2720 PF13286 Phosphohydrolase-associated domain M479_2720 PF01966 HD domain M479_2721 PF01048 Phosphorylase superfamily M479_2722 PF01497 Periplasmic binding protein M479_2723 PF03458 UPF0126 domain M479_2724 PF01521 Iron-sulphur cluster biosynthesis M479_2725 PF00654 Voltage gated chloride channel M479_2726 PF00202 Aminotransferase class-III M479_2727 PF01032 FecCD transport family M479_2728 PF01497 Periplasmic binding protein M479_2729 PF00005 ABC transporter M479_273 PF13989 YejG-like protein M479_2730 PF14814 Bifunctional transglycosylase second domain M479_2730 PF00905 Penicillin binding protein transpeptidase domain M479_2730 PF00912 Transglycosylase M479_2730 PF14812 Transmembrane domain of transglycosylase PBP1 at N-terminal M479_2731 PF00270 DEAD/DEAH box helicase M479_2731 PF04408 Helicase associated domain (HA2) M479_2731 PF00271 Helicase conserved C-terminal domain M479_2731 PF08482 ATP-dependent helicase C-terminal M479_2732 PF02834 LigT like Phosphoesterase M479_2733 PF03749 Sugar fermentation stimulation protein RE domain M479_2733 PF17746 SfsA N-terminal OB domain M479_2734 PF01258 Prokaryotic dksA/traR C4-type zinc finger M479_2735 PF00749 tRNA synthetases class I (E and Q), catalytic domain M479_2736 PF12626 Polymerase A arginine-rich C-terminus M479_2736 PF01743 Poly A polymerase head domain M479_2736 PF12627 Probable RNA and SrmB- binding site of polymerase A M479_2737 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) M479_2738 PF02548 Ketopantoate hydroxymethyltransferase M479_2739 PF02569 Pantoate-beta-alanine ligase M479_274 PF08352 Oligopeptide/dipeptide transporter, C-terminal region M479_274 PF00005 ABC transporter M479_2740 PF02261 Aspartate decarboxylase M479_2741 PF01522 Polysaccharide deacetylase M479_2743 PF01061 ABC-2 type transporter M479_2744 PF00005 ABC transporter M479_2745 PF00484 Carbonic anhydrase M479_2746 PF00156 Phosphoribosyl transferase domain M479_2747 PF10518 TAT (twin-arginine translocation) pathway signal sequence M479_2747 PF00394 Multicopper oxidase M479_2747 PF07732 Multicopper oxidase M479_2747 PF07731 Multicopper oxidase M479_2748 PF09691 Type II secretion system pilotin lipoprotein (PulS_OutS) M479_2749 PF17284 Spermidine synthase tetramerisation domain M479_275 PF00528 Binding-protein-dependent transport system inner membrane component M479_275 PF12911 N-terminal TM domain of oligopeptide transport permease C M479_2750 PF02675 S-adenosylmethionine decarboxylase M479_2751 PF00892 EamA-like transporter family M479_2752 PF06062 Uncharacterised protein family (UPF0231) M479_2753 PF00330 Aconitase family (aconitate hydratase) M479_2753 PF06434 Aconitate hydratase 2 N-terminus M479_2753 PF11791 Aconitate B N-terminal domain M479_2754 PF01797 Transposase IS200 like M479_2755 PF07992 Pyridine nucleotide-disulphide oxidoreductase M479_2755 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain M479_2756 PF02817 e3 binding domain M479_2756 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) M479_2756 PF00364 Biotin-requiring enzyme M479_2757 PF17831 Pyruvate dehydrogenase E1 component middle domain M479_2757 PF00456 Transketolase, thiamine diphosphate binding domain M479_2758 PF00392 Bacterial regulatory proteins, gntR family M479_2758 PF07729 FCD domain M479_2759 PF00324 Amino acid permease M479_276 PF00528 Binding-protein-dependent transport system inner membrane component M479_2760 PF17113 Regulatory signalling modulator protein AmpE M479_2761 PF01510 N-acetylmuramoyl-L-alanine amidase M479_2762 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain M479_2762 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain M479_2763 PF07963 Prokaryotic N-terminal methylation motif M479_2764 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain M479_2764 PF00437 Type II/IV secretion system protein M479_2765 PF00482 Type II secretion system (T2SS), protein F M479_2766 PF00478 IMP dehydrogenase / GMP reductase domain M479_2767 PF01121 Dephospho-CoA kinase M479_2768 PF07072 Cell division protein M479_2769 PF03884 DNA gyrase inhibitor YacG M479_277 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle M479_2771 PF02796 Helix-turn-helix domain of resolvase M479_2771 PF00665 Integrase core domain M479_2773 PF01695 IstB-like ATP binding protein M479_2774 PF00293 NUDIX domain M479_2775 PF07516 SecA Wing and Scaffold domain M479_2775 PF01043 SecA preprotein cross-linking domain M479_2775 PF07517 SecA DEAD-like domain M479_2775 PF02810 SEC-C motif M479_2776 PF06558 Secretion monitor precursor protein (SecM) M479_2778 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase M479_2779 PF00091 Tubulin/FtsZ family, GTPase domain M479_2779 PF12327 FtsZ family, C-terminal domain M479_278 PF12792 CSS motif domain associated with EAL M479_278 PF00563 EAL domain M479_2780 PF02491 SHS2 domain inserted in FTSA M479_2781 PF03799 Cell division protein FtsQ M479_2781 PF08478 POTRA domain, FtsQ-type M479_2782 PF07478 D-ala D-ala ligase C-terminus M479_2782 PF01820 D-ala D-ala ligase N-terminus M479_2783 PF08245 Mur ligase middle domain M479_2783 PF01225 Mur ligase family, catalytic domain M479_2783 PF02875 Mur ligase family, glutamate ligase domain M479_2784 PF04101 Glycosyltransferase family 28 C-terminal domain M479_2784 PF03033 Glycosyltransferase family 28 N-terminal domain M479_2785 PF01098 Cell cycle protein M479_2786 PF08245 Mur ligase middle domain M479_2786 PF02875 Mur ligase family, glutamate ligase domain M479_2787 PF00953 Glycosyl transferase family 4 M479_2787 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 M479_2788 PF08245 Mur ligase middle domain M479_2788 PF01225 Mur ligase family, catalytic domain M479_2788 PF02875 Mur ligase family, glutamate ligase domain M479_2789 PF08245 Mur ligase middle domain M479_2789 PF02875 Mur ligase family, glutamate ligase domain M479_2789 PF01225 Mur ligase family, catalytic domain M479_2790 PF03717 Penicillin-binding Protein dimerisation domain M479_2790 PF00905 Penicillin binding protein transpeptidase domain M479_2791 PF04999 Cell division protein FtsL M479_2792 PF01795 MraW methylase family M479_2793 PF02381 MraZ protein, putative antitoxin-like M479_2794 PF06610 L-alanine exporter M479_2796 PF00356 Bacterial regulatory proteins, lacI family M479_2796 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family M479_2797 PF01797 Transposase IS200 like M479_2798 PF10369 Small subunit of acetolactate synthase M479_2799 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain M479_2799 PF00205 Thiamine pyrophosphate enzyme, central domain M479_2799 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain M479_28 PF02537 CrcB-like protein, Camphor Resistance (CrcB) M479_280 PF00877 NlpC/P60 family M479_2800 PF00872 Transposase, Mutator family M479_2801 PF00501 AMP-binding enzyme M479_2802 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M479_2802 PF03466 LysR substrate binding domain M479_2804 PF08502 LeuA allosteric (dimerisation) domain M479_2804 PF00682 HMGL-like M479_2805 PF00180 Isocitrate/isopropylmalate dehydrogenase M479_2806 PF00330 Aconitase family (aconitate hydratase) M479_2807 PF00694 Aconitase C-terminal domain M479_2808 PF07690 Major Facilitator Superfamily M479_2809 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle M479_2809 PF12793 Sugar transport-related sRNA regulator N-term M479_281 PF01569 PAP2 superfamily M479_2812 PF00528 Binding-protein-dependent transport system inner membrane component M479_2813 PF00005 ABC transporter M479_2814 PF09335 SNARE associated Golgi protein M479_2815 PF03104 DNA polymerase family B, exonuclease domain M479_2815 PF00136 DNA polymerase family B M479_2816 PF18337 RapA N-terminal Tudor like domain M479_2816 PF12137 RNA polymerase recycling family C-terminal M479_2816 PF18339 RapA N-terminal Tudor like domain 1 M479_2816 PF00271 Helicase conserved C-terminal domain M479_2816 PF00176 SNF2 family N-terminal domain M479_2819 PF00691 OmpA family M479_2819 PF05736 OprF membrane domain M479_282 PF07683 Cobalamin synthesis protein cobW C-terminal domain M479_282 PF02492 CobW/HypB/UreG, nucleotide-binding domain M479_2826 PF04717 Type VI secretion system, phage-baseplate injector M479_2827 PF00004 ATPase family associated with various cellular activities (AAA) M479_2827 PF17871 AAA lid domain M479_2827 PF10431 C-terminal, D2-small domain, of ClpB protein M479_2827 PF07724 AAA domain (Cdc48 subfamily) M479_2836 PF00849 RNA pseudouridylate synthase M479_2837 PF05099 Tellurite resistance protein TerB M479_2837 PF00226 DnaJ domain M479_2838 PF04453 LPS transport system D M479_2838 PF03968 OstA-like protein M479_2839 PF09312 SurA N-terminal domain M479_2839 PF00639 PPIC-type PPIASE domain M479_284 PF07729 FCD domain M479_284 PF00392 Bacterial regulatory proteins, gntR family M479_2840 PF04166 Pyridoxal phosphate biosynthetic protein PdxA M479_2841 PF00398 Ribosomal RNA adenine dimethylase M479_2842 PF04379 ApaG domain M479_2843 PF00149 Calcineurin-like phosphoesterase M479_2845 PF00186 Dihydrofolate reductase M479_2846 PF12821 Threonine/Serine exporter, ThrE M479_2847 PF06738 Putative threonine/serine exporter M479_2848 PF01810 LysE type translocator M479_2849 PF02142 MGS-like domain M479_2849 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain M479_2849 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain M479_285 PF01232 Mannitol dehydrogenase Rossmann domain M479_285 PF08125 Mannitol dehydrogenase C-terminal domain M479_2850 PF00117 Glutamine amidotransferase class-I M479_2850 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain M479_2851 PF01113 Dihydrodipicolinate reductase, N-terminus M479_2851 PF05173 Dihydrodipicolinate reductase, C-terminus M479_2852 PF02401 LytB protein M479_2853 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase M479_2854 PF01252 Signal peptidase (SPase) II M479_2855 PF06827 Zinc finger found in FPG and IleRS M479_2855 PF08264 Anticodon-binding domain of tRNA M479_2855 PF00133 tRNA synthetases class I (I, L, M and V) M479_2856 PF01687 Riboflavin kinase M479_2856 PF06574 FAD synthetase M479_2857 PF01649 Ribosomal protein S20 M479_2858 PF03466 LysR substrate binding domain M479_2858 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M479_2859 PF06965 Na+/H+ antiporter 1 M479_286 PF03786 D-mannonate dehydratase (UxuA) M479_2860 PF00226 DnaJ domain M479_2860 PF00684 DnaJ central domain M479_2860 PF01556 DnaJ C terminal domain M479_2861 PF00012 Hsp70 protein M479_2862 PF01184 GPR1/FUN34/yaaH family M479_2864 PF07690 Major Facilitator Superfamily M479_2865 PF00994 Probable molybdopterin binding domain M479_2866 PF00923 Transaldolase/Fructose-6-phosphate aldolase M479_2867 PF03883 Peroxide stress protein YaaA M479_2869 PF14821 Threonine synthase N terminus M479_2869 PF00291 Pyridoxal-phosphate dependent enzyme M479_287 PF09285 Elongation factor P, C-terminal M479_287 PF08207 Elongation factor P (EF-P) KOW-like domain M479_287 PF01132 Elongation factor P (EF-P) OB domain M479_2870 PF00288 GHMP kinases N terminal domain M479_2870 PF08544 GHMP kinases C terminal M479_2871 PF00696 Amino acid kinase family M479_2871 PF13840 ACT domain M479_2871 PF03447 Homoserine dehydrogenase, NAD binding domain M479_2871 PF00742 Homoserine dehydrogenase M479_2871 PF01842 ACT domain M479_2873 PF00072 Response regulator receiver domain M479_2873 PF00486 Transcriptional regulatory protein, C terminal M479_2874 PF05981 CreA protein M479_2876 PF00300 Histidine phosphatase superfamily (branch 1) M479_2877 PF12833 Helix-turn-helix domain M479_2877 PF06445 GyrI-like small molecule binding domain M479_2878 PF01371 Trp repressor protein M479_2879 PF01931 Protein of unknown function DUF84 M479_288 PF03222 Tryptophan/tyrosine permease family M479_2880 PF01464 Transglycosylase SLT domain M479_2880 PF14718 Soluble lytic murein transglycosylase L domain M479_2881 PF00690 Cation transporter/ATPase, N-terminus M479_2881 PF00689 Cation transporting ATPase, C-terminus M479_2883 PF17152 Periplasmic sensor domain M479_2883 PF00990 Diguanylate cyclase, GGDEF domain M479_2884 PF00691 OmpA family M479_2885 PF00005 ABC transporter M479_2885 PF12848 ABC transporter M479_2888 PF01381 Helix-turn-helix M479_2888 PF13521 AAA domain M479_2889 PF18073 Rubredoxin metal binding domain M479_289 PF03692 Putative zinc- or iron-chelating domain M479_2890 PF18429 Domain of unknown function (DUF5609) M479_2891 PF10144 Bacterial virulence factor haemolysin M479_2892 PF01048 Phosphorylase superfamily M479_2893 PF01676 Metalloenzyme superfamily M479_2894 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain M479_2894 PF00591 Glycosyl transferase family, a/b domain M479_2894 PF02885 Glycosyl transferase family, helical bundle domain M479_2895 PF01791 DeoC/LacD family aldolase M479_2896 PF07662 Na+ dependent nucleoside transporter C-terminus M479_2896 PF07670 Nucleoside recognition M479_2896 PF01773 Na+ dependent nucleoside transporter N-terminus M479_2897 PF01773 Na+ dependent nucleoside transporter N-terminus M479_2897 PF07662 Na+ dependent nucleoside transporter C-terminus M479_2897 PF07670 Nucleoside recognition M479_2898 PF01026 TatD related DNase M479_2899 PF01734 Patatin-like phospholipase M479_29 PF02416 mttA/Hcf106 family M479_2900 PF07043 Protein of unknown function (DUF1328) M479_2901 PF04972 BON domain M479_2902 PF16658 Class II release factor RF3, C-terminal domain M479_2902 PF03144 Elongation factor Tu domain 2 M479_2902 PF00009 Elongation factor Tu GTP binding domain M479_2903 PF00583 Acetyltransferase (GNAT) family M479_2904 PF03603 DNA polymerase III psi subunit M479_2905 PF05175 Methyltransferase small domain M479_2905 PF08468 Methyltransferase small domain N-terminal M479_2907 PF07256 Protein of unknown function (DUF1435) M479_2908 PF00990 Diguanylate cyclase, GGDEF domain M479_2909 PF01095 Pectinesterase M479_291 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain M479_291 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain M479_291 PF01842 ACT domain M479_2911 PF00873 AcrB/AcrD/AcrF family M479_2912 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion M479_2915 PF01075 Glycosyltransferase family 9 (heptosyltransferase) M479_2916 PF00370 FGGY family of carbohydrate kinases, N-terminal domain M479_2916 PF02782 FGGY family of carbohydrate kinases, C-terminal domain M479_2917 PF00325 Bacterial regulatory proteins, crp family M479_2917 PF04198 Putative sugar-binding domain M479_2918 PF00005 ABC transporter M479_2919 PF02653 Branched-chain amino acid transport system / permease component M479_2920 PF02653 Branched-chain amino acid transport system / permease component M479_2921 PF13407 Periplasmic binding protein domain M479_2922 PF01791 DeoC/LacD family aldolase M479_2923 PF03992 Antibiotic biosynthesis monooxygenase M479_2924 PF10696 Protein of unknown function (DUF2501) M479_2925 PF00391 PEP-utilising enzyme, mobile domain M479_2925 PF02896 PEP-utilising enzyme, TIM barrel domain M479_2925 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 M479_2925 PF00381 PTS HPr component phosphorylation site M479_2925 PF05524 PEP-utilising enzyme, N-terminal M479_2927 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit M479_2928 PF12833 Helix-turn-helix domain M479_2929 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit M479_293 PF00171 Aldehyde dehydrogenase family M479_2931 PF05987 Bacterial protein of unknown function (DUF898) M479_2935 PF00665 Integrase core domain M479_294 PF02782 FGGY family of carbohydrate kinases, C-terminal domain M479_294 PF00370 FGGY family of carbohydrate kinases, N-terminal domain M479_2940 PF01555 DNA methylase M479_2941 PF01527 Transposase M479_2943 PF12102 Domain of unknown function (DUF3578) M479_2943 PF07728 AAA domain (dynein-related subfamily) M479_2944 PF02796 Helix-turn-helix domain of resolvase M479_2944 PF00665 Integrase core domain M479_2945 PF01695 IstB-like ATP binding protein M479_2946 PF08676 MutL C terminal dimerisation domain M479_2946 PF01119 DNA mismatch repair protein, C-terminal domain M479_2948 PF13356 Arm DNA-binding domain M479_2948 PF00589 Phage integrase family M479_295 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) M479_2950 PF03739 Lipopolysaccharide export system permease LptF/LptG M479_2951 PF03739 Lipopolysaccharide export system permease LptF/LptG M479_2952 PF02789 Cytosol aminopeptidase family, N-terminal domain M479_2952 PF00883 Cytosol aminopeptidase family, catalytic domain M479_2953 PF04364 DNA polymerase III chi subunit, HolC M479_2954 PF08264 Anticodon-binding domain of tRNA M479_2954 PF00133 tRNA synthetases class I (I, L, M and V) M479_2954 PF10458 Valyl tRNA synthetase tRNA binding arm M479_2955 PF00583 Acetyltransferase (GNAT) family M479_2956 PF06877 Regulator of ribonuclease activity B M479_2957 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain M479_2957 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain M479_2958 PF04074 YhcH/YjgK/YiaL M479_2961 PF00528 Binding-protein-dependent transport system inner membrane component M479_2962 PF12911 N-terminal TM domain of oligopeptide transport permease C M479_2962 PF00528 Binding-protein-dependent transport system inner membrane component M479_2963 PF00005 ABC transporter M479_2963 PF08352 Oligopeptide/dipeptide transporter, C-terminal region M479_2964 PF08352 Oligopeptide/dipeptide transporter, C-terminal region M479_2964 PF00005 ABC transporter M479_2965 PF13597 Anaerobic ribonucleoside-triphosphate reductase M479_2965 PF03477 ATP cone domain M479_2968 PF00392 Bacterial regulatory proteins, gntR family M479_2968 PF07702 UTRA domain M479_2969 PF06754 Phosphonate metabolism protein PhnG M479_297 PF00005 ABC transporter M479_2970 PF05845 Bacterial phosphonate metabolism protein (PhnH) M479_2971 PF05861 Bacterial phosphonate metabolism protein (PhnI) M479_2972 PF06007 Phosphonate metabolism protein PhnJ M479_2973 PF00005 ABC transporter M479_2974 PF00005 ABC transporter M479_2975 PF07969 Amidohydrolase family M479_2977 PF12706 Beta-lactamase superfamily domain M479_2978 PF13460 NAD(P)H-binding M479_298 PF02653 Branched-chain amino acid transport system / permease component M479_2981 PF17912 MalK OB fold domain M479_2981 PF00005 ABC transporter M479_2981 PF03459 TOBE domain M479_2982 PF00528 Binding-protein-dependent transport system inner membrane component M479_2984 PF13416 Bacterial extracellular solute-binding protein M479_2987 PF01541 GIY-YIG catalytic domain M479_2988 PF13508 Acetyltransferase (GNAT) domain M479_299 PF00293 NUDIX domain M479_2992 PF08139 Prokaryotic membrane lipoprotein lipid attachment site M479_2992 PF02321 Outer membrane efflux protein M479_2993 PF00873 AcrB/AcrD/AcrF family M479_2994 PF00529 HlyD membrane-fusion protein of T1SS M479_2994 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion M479_2996 PF00296 Luciferase-like monooxygenase M479_2997 PF01381 Helix-turn-helix M479_2999 PF00270 DEAD/DEAH box helicase M479_2999 PF00271 Helicase conserved C-terminal domain M479_2999 PF03880 DbpA RNA binding domain M479_2999 PF12343 Cold shock protein DEAD box A M479_3 PF17973 Bacterial Alpha-2-macroglobulin MG10 domain M479_3 PF07703 Alpha-2-macroglobulin bait region domain M479_3 PF01835 MG2 domain M479_3 PF00207 Alpha-2-macroglobulin family M479_3 PF17962 Bacterial macroglobulin domain 6 M479_3 PF17972 Bacterial Alpha-2-macroglobulin MG5 domain M479_3 PF11974 Bacterial alpha-2-macroglobulin MG3 domain M479_30 PF04055 Radical SAM superfamily M479_30 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family M479_300 PF00381 PTS HPr component phosphorylation site M479_300 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 M479_3000 PF07719 Tetratricopeptide repeat M479_3000 PF13181 Tetratricopeptide repeat M479_3001 PF01138 3' exoribonuclease family, domain 1 M479_3001 PF03725 3' exoribonuclease family, domain 2 M479_3001 PF00575 S1 RNA binding domain M479_3001 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain M479_3001 PF00013 KH domain M479_3003 PF00665 Integrase core domain M479_3003 PF13333 Integrase core domain M479_3003 PF13276 HTH-like domain M479_3006 PF16901 C-terminal domain of alpha-glycerophosphate oxidase M479_3006 PF01266 FAD dependent oxidoreductase M479_3007 PF00343 Carbohydrate phosphorylase M479_3008 PF08323 Starch synthase catalytic domain M479_3008 PF00534 Glycosyl transferases group 1 M479_3009 PF00483 Nucleotidyl transferase M479_301 PF00294 pfkB family carbohydrate kinase M479_3010 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) M479_3010 PF00128 Alpha amylase, catalytic domain M479_3010 PF18390 Glycogen debranching enzyme C-terminal domain M479_3011 PF00128 Alpha amylase, catalytic domain M479_3011 PF02806 Alpha amylase, C-terminal all-beta domain M479_3011 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) M479_3012 PF06580 Histidine kinase M479_3012 PF07694 5TMR of 5TMR-LYT M479_3013 PF02369 Bacterial Ig-like domain (group 1) M479_3013 PF07979 Intimin C-type lectin domain M479_3013 PF11924 Inverse autotransporter, beta-domain M479_3013 PF09134 Invasin, domain 3 M479_3018 PF02774 Semialdehyde dehydrogenase, dimerisation domain M479_3018 PF01118 Semialdehyde dehydrogenase, NAD binding domain M479_3019 PF01914 MarC family integral membrane protein M479_302 PF02378 Phosphotransferase system, EIIC M479_302 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit M479_3023 PF01202 Shikimate kinase M479_3024 PF02447 GntP family permease M479_3025 PF00356 Bacterial regulatory proteins, lacI family M479_3025 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family M479_3026 PF00356 Bacterial regulatory proteins, lacI family M479_3026 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family M479_3027 PF17954 Quercetinase C-terminal cupin domain M479_3027 PF02678 Pirin M479_3029 PF00072 Response regulator receiver domain M479_3029 PF00486 Transcriptional regulatory protein, C terminal M479_303 PF00486 Transcriptional regulatory protein, C terminal M479_3031 PF01116 Fructose-bisphosphate aldolase class-II M479_3033 PF13407 Periplasmic binding protein domain M479_3034 PF02653 Branched-chain amino acid transport system / permease component M479_3035 PF00005 ABC transporter M479_3036 PF00072 Response regulator receiver domain M479_3036 PF13188 PAS domain M479_3036 PF08448 PAS fold M479_3036 PF00512 His Kinase A (phospho-acceptor) domain M479_3036 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M479_3038 PF01384 Phosphate transporter family M479_304 PF17550 Family of unknown function M479_3040 PF10625 Universal stress protein B (UspB) M479_3041 PF00582 Universal stress protein family M479_3042 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase M479_3042 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain M479_3043 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) M479_3043 PF00413 Matrixin M479_3043 PF08548 Peptidase M10 serralysin C terminal M479_3044 PF04445 Putative SAM-dependent methyltransferase M479_3045 PF01432 Peptidase family M3 M479_3046 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ M479_3047 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain M479_3047 PF07992 Pyridine nucleotide-disulphide oxidoreductase M479_3048 PF05651 Putative sugar diacid recognition M479_3048 PF17853 GGDEF-like domain M479_3048 PF13556 PucR C-terminal helix-turn-helix domain M479_3049 PF02447 GntP family permease M479_3050 PF02595 Glycerate kinase family M479_3055 PF03631 Virulence factor BrkB M479_3056 PF02611 CDP-diacylglycerol pyrophosphatase M479_3057 PF05170 AsmA family M479_3058 PF00563 EAL domain M479_3059 PF01361 Tautomerase enzyme M479_306 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain M479_306 PF02753 Pili assembly chaperone PapD, C-terminal domain M479_3060 PF00294 pfkB family carbohydrate kinase M479_3061 PF00675 Insulinase (Peptidase family M16) M479_3061 PF05193 Peptidase M16 inactive domain M479_3063 PF00375 Sodium:dicarboxylate symporter family M479_3065 PF06917 Periplasmic pectate lyase M479_3066 PF06178 Oligogalacturonate-specific porin protein (KdgM) M479_3067 PF00563 EAL domain M479_3067 PF17154 Gammaproteobacterial periplasmic sensor domain M479_3067 PF00990 Diguanylate cyclase, GGDEF domain M479_3067 PF00672 HAMP domain M479_3068 PF01270 Glycosyl hydrolases family 8 M479_3069 PF08352 Oligopeptide/dipeptide transporter, C-terminal region M479_3069 PF00005 ABC transporter M479_307 PF13954 PapC N-terminal domain M479_307 PF13953 PapC C-terminal domain M479_307 PF00577 Outer membrane usher protein M479_3070 PF08352 Oligopeptide/dipeptide transporter, C-terminal region M479_3070 PF00005 ABC transporter M479_3071 PF12911 N-terminal TM domain of oligopeptide transport permease C M479_3071 PF00528 Binding-protein-dependent transport system inner membrane component M479_3072 PF00528 Binding-protein-dependent transport system inner membrane component M479_3073 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle M479_3075 PF08479 POTRA domain, ShlB-type M479_3075 PF17287 POTRA domain M479_3075 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB M479_3076 PF13332 Hemagglutinin repeat M479_3076 PF05860 haemagglutination activity domain M479_3076 PF05594 Haemagluttinin repeat M479_3076 PF04829 Pre-toxin domain with VENN motif M479_3079 PF07690 Major Facilitator Superfamily M479_308 PF01261 Xylose isomerase-like TIM barrel M479_3080 PF05231 MASE1 M479_3080 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M479_3080 PF07730 Histidine kinase M479_3081 PF00196 Bacterial regulatory proteins, luxR family M479_3081 PF00072 Response regulator receiver domain M479_3082 PF00884 Sulfatase M479_3082 PF08019 Phosphoethanolamine transferase EptA/EptB M479_3083 PF01695 IstB-like ATP binding protein M479_3085 PF02796 Helix-turn-helix domain of resolvase M479_3085 PF00665 Integrase core domain M479_3086 PF07338 Protein of unknown function (DUF1471) M479_3087 PF02770 Acyl-CoA dehydrogenase, middle domain M479_3087 PF18158 Adaptive response protein AidB N-terminal domain M479_3087 PF00441 Acyl-CoA dehydrogenase, C-terminal domain M479_3088 PF08032 RNA 2'-O ribose methyltransferase substrate binding M479_3088 PF00588 SpoU rRNA Methylase family M479_3089 PF00773 RNB domain M479_3089 PF08461 Ribonuclease R winged-helix domain M479_3089 PF08206 Ribonuclease B OB domain M479_3089 PF00575 S1 RNA binding domain M479_3089 PF17876 Cold shock domain M479_309 PF03601 Conserved hypothetical protein 698 M479_3090 PF02082 Transcriptional regulator M479_3091 PF00709 Adenylosuccinate synthetase M479_3092 PF09838 Uncharacterized protein conserved in bacteria (DUF2065) M479_3093 PF01145 SPFH domain / Band 7 family M479_3094 PF01145 SPFH domain / Band 7 family M479_3094 PF12221 Bacterial membrane protein N terminal M479_3095 PF16360 GTP-binding GTPase Middle Region M479_3095 PF13167 GTP-binding GTPase N-terminal M479_3095 PF01926 50S ribosome-binding GTPase M479_3096 PF17209 Hfq protein M479_3098 PF08676 MutL C terminal dimerisation domain M479_3098 PF01119 DNA mismatch repair protein, C-terminal domain M479_3099 PF01520 N-acetylmuramoyl-L-alanine amidase M479_31 PF03099 Biotin/lipoate A/B protein ligase family M479_310 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M479_310 PF03466 LysR substrate binding domain M479_3100 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE M479_3101 PF01256 Carbohydrate kinase M479_3101 PF03853 YjeF-related protein N-terminus M479_3102 PF08331 Domain of unknown function (DUF1730) M479_3105 PF00929 Exonuclease M479_3106 PF03193 RsgA GTPase M479_3107 PF02666 Phosphatidylserine decarboxylase M479_3108 PF00924 Mechanosensitive ion channel M479_3108 PF12795 Mechanosensitive ion channel porin domain M479_3108 PF12794 Mechanosensitive ion channel inner membrane domain 1 M479_3109 PF00152 tRNA synthetases class II (D, K and N) M479_3110 PF02910 Fumarate reductase flavoprotein C-term M479_3110 PF00890 FAD binding domain M479_3111 PF13085 2Fe-2S iron-sulfur cluster binding domain M479_3111 PF13183 4Fe-4S dicluster domain M479_3112 PF02300 Fumarate reductase subunit C M479_3113 PF02313 Fumarate reductase subunit D M479_3114 PF00893 Small Multidrug Resistance protein M479_3115 PF08207 Elongation factor P (EF-P) KOW-like domain M479_3115 PF09285 Elongation factor P, C-terminal M479_3115 PF01132 Elongation factor P (EF-P) OB domain M479_3116 PF04055 Radical SAM superfamily M479_3117 PF13698 Domain of unknown function (DUF4156) M479_3118 PF00118 TCP-1/cpn60 chaperonin family M479_3119 PF00166 Chaperonin 10 Kd subunit M479_312 PF00324 Amino acid permease M479_3120 PF04186 FxsA cytoplasmic membrane protein M479_3121 PF10415 Fumarase C C-terminus M479_3121 PF00206 Lyase M479_3122 PF03605 Anaerobic c4-dicarboxylate membrane transporter M479_3123 PF03091 CutA1 divalent ion tolerance protein M479_3124 PF11412 Disulphide bond corrector protein DsbC M479_3124 PF02683 Cytochrome C biogenesis protein transmembrane region M479_3125 PF00384 Molybdopterin oxidoreductase M479_3125 PF01568 Molydopterin dinucleotide binding domain M479_3125 PF04879 Molybdopterin oxidoreductase Fe4S4 domain M479_3126 PF12800 4Fe-4S binding domain M479_3126 PF13247 4Fe-4S dicluster domain M479_3127 PF07992 Pyridine nucleotide-disulphide oxidoreductase M479_3127 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster M479_3127 PF13247 4Fe-4S dicluster domain M479_3135 PF06379 L-rhamnose-proton symport protein (RhaT) M479_3136 PF12833 Helix-turn-helix domain M479_3136 PF02311 AraC-like ligand binding domain M479_3137 PF12833 Helix-turn-helix domain M479_3137 PF02311 AraC-like ligand binding domain M479_3140 PF02782 FGGY family of carbohydrate kinases, C-terminal domain M479_3140 PF00370 FGGY family of carbohydrate kinases, N-terminal domain M479_3141 PF06134 L-rhamnose isomerase (RhaA) M479_3142 PF00596 Class II Aldolase and Adducin N-terminal domain M479_3143 PF00465 Iron-containing alcohol dehydrogenase M479_3144 PF05336 L-rhamnose mutarotase M479_3145 PF00436 Single-strand binding protein family M479_3146 PF00005 ABC transporter M479_3146 PF17760 UvrA interaction domain M479_3146 PF17755 UvrA DNA-binding domain M479_3147 PF04237 YjbR M479_3148 PF00155 Aminotransferase class I and II M479_3149 PF00842 Alanine racemase, C-terminal domain M479_3149 PF01168 Alanine racemase, N-terminal domain M479_315 PF01032 FecCD transport family M479_3150 PF03796 DnaB-like helicase C terminal domain M479_3150 PF00772 DnaB-like helicase N terminal domain M479_3151 PF00107 Zinc-binding dehydrogenase M479_3151 PF08240 Alcohol dehydrogenase GroES-like domain M479_3152 PF09583 Phage shock protein G (Phageshock_PspG) M479_3153 PF01207 Dihydrouridine synthase (Dus) M479_3154 PF01475 Ferric uptake regulator family M479_3155 PF00717 Peptidase S24-like M479_3155 PF01726 LexA DNA binding domain M479_3156 PF01219 Prokaryotic diacylglycerol kinase M479_3157 PF01553 Acyltransferase M479_3158 PF01040 UbiA prenyltransferase family M479_3159 PF04345 Chorismate lyase M479_316 PF00005 ABC transporter M479_3161 PF12951 Passenger-associated-transport-repeat M479_3162 PF08031 Berberine and berberine like M479_3162 PF01565 FAD binding domain M479_3165 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain M479_3166 PF13954 PapC N-terminal domain M479_3166 PF13953 PapC C-terminal domain M479_3166 PF00577 Outer membrane usher protein M479_3168 PF02342 TerD domain M479_3169 PF02342 TerD domain M479_317 PF00593 TonB dependent receptor M479_317 PF07715 TonB-dependent Receptor Plug Domain M479_3170 PF03741 Integral membrane protein TerC family M479_3171 PF05099 Tellurite resistance protein TerB M479_3172 PF02342 TerD domain M479_3173 PF02342 TerD domain M479_3177 PF11202 Phosphoribosyl transferase (PRTase) M479_3177 PF15608 PELOTA RNA binding domain M479_318 PF13417 Glutathione S-transferase, N-terminal domain M479_318 PF00043 Glutathione S-transferase, C-terminal domain M479_3181 PF04055 Radical SAM superfamily M479_3182 PF06228 Haem utilisation ChuX/HutX M479_3183 PF13460 NAD(P)H-binding M479_3184 PF10636 Hemin uptake protein hemP M479_3185 PF07715 TonB-dependent Receptor Plug Domain M479_3185 PF00593 TonB dependent receptor M479_3186 PF05171 Haemin-degrading HemS.ChuX domain M479_3187 PF01497 Periplasmic binding protein M479_3188 PF01032 FecCD transport family M479_3189 PF00005 ABC transporter M479_3190 PF01053 Cys/Met metabolism PLP-dependent enzyme M479_3191 PF03222 Tryptophan/tyrosine permease family M479_3192 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M479_3192 PF03466 LysR substrate binding domain M479_3193 PF01206 Sulfurtransferase TusA M479_3194 PF04143 Sulphur transport M479_3195 PF01312 FlhB HrpN YscU SpaS Family M479_3196 PF01311 Bacterial export proteins, family 1 M479_3197 PF01313 Bacterial export proteins, family 3 M479_3198 PF00813 FliP family M479_3199 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term M479_32 PF04359 Protein of unknown function (DUF493) M479_3202 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain M479_3202 PF18269 T3SS EscN ATPase C-terminal domain M479_3203 PF00771 FHIPEP family M479_3206 PF01514 Secretory protein of YscJ/FliF family M479_3210 PF12833 Helix-turn-helix domain M479_3210 PF14525 AraC-binding-like domain M479_3214 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) M479_3214 PF00072 Response regulator receiver domain M479_3214 PF01627 Hpt domain M479_3214 PF00512 His Kinase A (phospho-acceptor) domain M479_3214 PF00672 HAMP domain M479_3214 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M479_3215 PF00072 Response regulator receiver domain M479_3215 PF00196 Bacterial regulatory proteins, luxR family M479_3216 PF00375 Sodium:dicarboxylate symporter family M479_3217 PF13193 AMP-binding enzyme C-terminal domain M479_3217 PF00501 AMP-binding enzyme M479_3217 PF16177 Acetyl-coenzyme A synthetase N-terminus M479_3218 PF04341 Protein of unknown function, DUF485 M479_3219 PF00474 Sodium:solute symporter family M479_322 PF03180 NLPA lipoprotein M479_3221 PF00665 Integrase core domain M479_3221 PF02796 Helix-turn-helix domain of resolvase M479_3222 PF01695 IstB-like ATP binding protein M479_3223 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain M479_3223 PF01367 5'-3' exonuclease, C-terminal SAM fold M479_3224 PF13683 Integrase core domain M479_3224 PF13276 HTH-like domain M479_3225 PF01527 Transposase M479_323 PF00005 ABC transporter M479_323 PF09383 NIL domain M479_3231 PF00132 Bacterial transferase hexapeptide (six repeats) M479_3232 PF18317 Shikimate 5'-dehydrogenase C-terminal domain M479_3232 PF01488 Shikimate / quinate 5-dehydrogenase M479_3232 PF08501 Shikimate dehydrogenase substrate binding domain M479_3233 PF01300 Telomere recombination M479_3234 PF01396 Topoisomerase DNA binding C4 zinc finger M479_3235 PF04361 Protein of unknown function (DUF494) M479_3236 PF02481 DNA recombination-mediator protein A M479_3236 PF17782 DprA winged helix domain M479_3237 PF01327 Polypeptide deformylase M479_3238 PF02911 Formyl transferase, C-terminal domain M479_3238 PF00551 Formyl transferase M479_3239 PF01189 16S rRNA methyltransferase RsmB/F M479_3239 PF01029 NusB family M479_324 PF00528 Binding-protein-dependent transport system inner membrane component M479_3240 PF02254 TrkA-N domain M479_3240 PF02080 TrkA-C domain M479_3241 PF01741 Large-conductance mechanosensitive channel, MscL M479_3242 PF03889 Alternative ribosome-rescue factor A M479_3243 PF13411 MerR HTH family regulatory protein M479_3244 PF01196 Ribosomal protein L17 M479_3245 PF01000 RNA polymerase Rpb3/RpoA insert domain M479_3245 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain M479_3245 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain M479_3246 PF01479 S4 domain M479_3246 PF00163 Ribosomal protein S4/S9 N-terminal domain M479_3247 PF00411 Ribosomal protein S11 M479_3248 PF00416 Ribosomal protein S13/S18 M479_3249 PF00444 Ribosomal protein L36 M479_325 PF07943 Penicillin-binding protein 5, C-terminal domain M479_325 PF00768 D-alanyl-D-alanine carboxypeptidase M479_3250 PF00344 SecY translocase M479_3251 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A M479_3252 PF00327 Ribosomal protein L30p/L7e M479_3253 PF00333 Ribosomal protein S5, N-terminal domain M479_3253 PF03719 Ribosomal protein S5, C-terminal domain M479_3254 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast M479_3255 PF00347 Ribosomal protein L6 M479_3256 PF00410 Ribosomal protein S8 M479_3257 PF00253 Ribosomal protein S14p/S29e M479_3258 PF00281 Ribosomal protein L5 M479_3258 PF00673 ribosomal L5P family C-terminus M479_3259 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 M479_3259 PF00467 KOW motif M479_3260 PF00238 Ribosomal protein L14p/L23e M479_3261 PF00366 Ribosomal protein S17 M479_3262 PF00831 Ribosomal L29 protein M479_3263 PF00252 Ribosomal protein L16p/L10e M479_3264 PF07650 KH domain M479_3264 PF00189 Ribosomal protein S3, C-terminal domain M479_3265 PF00237 Ribosomal protein L22p/L17e M479_3266 PF00203 Ribosomal protein S19 M479_3267 PF03947 Ribosomal Proteins L2, C-terminal domain M479_3267 PF00181 Ribosomal Proteins L2, RNA binding domain M479_3268 PF00276 Ribosomal protein L23 M479_3269 PF00573 Ribosomal protein L4/L1 family M479_327 PF00455 DeoR C terminal sensor domain M479_327 PF08220 DeoR-like helix-turn-helix domain M479_3270 PF00297 Ribosomal protein L3 M479_3271 PF00338 Ribosomal protein S10p/S20e M479_3272 PF00210 Ferritin-like domain M479_3273 PF04324 BFD-like [2Fe-2S] binding domain M479_3274 PF01797 Transposase IS200 like M479_3275 PF00009 Elongation factor Tu GTP binding domain M479_3275 PF03144 Elongation factor Tu domain 2 M479_3275 PF03143 Elongation factor Tu C-terminal domain M479_3276 PF03144 Elongation factor Tu domain 2 M479_3276 PF00009 Elongation factor Tu GTP binding domain M479_3276 PF00679 Elongation factor G C-terminus M479_3276 PF03764 Elongation factor G, domain IV M479_3276 PF14492 Elongation Factor G, domain II M479_3277 PF00177 Ribosomal protein S7p/S5e M479_3278 PF00164 Ribosomal protein S12/S23 M479_3279 PF04077 DsrH like protein M479_328 PF01791 DeoC/LacD family aldolase M479_3280 PF02635 DsrE/DsrF-like family M479_3281 PF02635 DsrE/DsrF-like family M479_3282 PF13309 HTH domain M479_3282 PF08348 YheO-like PAS domain M479_3283 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase M479_3283 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase M479_3284 PF04102 SlyX M479_3285 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase M479_3286 PF09526 Probable metal-binding protein (DUF2387) M479_3287 PF02254 TrkA-N domain M479_3287 PF00999 Sodium/hydrogen exchanger family M479_3288 PF02525 Flavodoxin-like fold M479_3289 PF12848 ABC transporter M479_3289 PF00005 ABC transporter M479_329 PF01569 PAP2 superfamily M479_3290 PF00535 Glycosyl transferase family 2 M479_3293 PF02668 Taurine catabolism dioxygenase TauD, TfdA family M479_3294 PF00528 Binding-protein-dependent transport system inner membrane component M479_3295 PF00005 ABC transporter M479_3296 PF04069 Substrate binding domain of ABC-type glycine betaine transport system M479_3297 PF01810 LysE type translocator M479_3298 PF00561 alpha/beta hydrolase fold M479_3299 PF06794 Uncharacterised protein family (UPF0270) M479_33 PF00768 D-alanyl-D-alanine carboxypeptidase M479_33 PF07943 Penicillin-binding protein 5, C-terminal domain M479_3300 PF00485 Phosphoribulokinase / Uridine kinase family M479_3302 PF02566 OsmC-like protein M479_3303 PF13545 Crp-like helix-turn-helix domain M479_3303 PF00027 Cyclic nucleotide-binding domain M479_3304 PF12805 FUSC-like inner membrane protein yccS M479_3305 PF00202 Aminotransferase class-III M479_3306 PF00117 Glutamine amidotransferase class-I M479_3307 PF05872 Bacterial protein of unknown function (DUF853) M479_3308 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD M479_3309 PF02056 Family 4 glycosyl hydrolase M479_3309 PF11975 Family 4 glycosyl hydrolase C-terminal domain M479_331 PF02080 TrkA-C domain M479_331 PF06826 Predicted Permease Membrane Region M479_3310 PF00356 Bacterial regulatory proteins, lacI family M479_3312 PF07690 Major Facilitator Superfamily M479_3313 PF07969 Amidohydrolase family M479_3314 PF18267 Rubredoxin NAD+ reductase C-terminal domain M479_3314 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain M479_3314 PF01077 Nitrite and sulphite reductase 4Fe-4S domain M479_3314 PF04324 BFD-like [2Fe-2S] binding domain M479_3314 PF07992 Pyridine nucleotide-disulphide oxidoreductase M479_3315 PF13806 Rieske-like [2Fe-2S] domain M479_3316 PF01226 Formate/nitrite transporter M479_3317 PF14824 Sirohaem biosynthesis protein central M479_3317 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases M479_3317 PF10414 Sirohaem synthase dimerisation region M479_3318 PF00579 tRNA synthetases class I (W and Y) M479_3319 PF13419 Haloacid dehalogenase-like hydrolase M479_332 PF00462 Glutaredoxin M479_3320 PF00834 Ribulose-phosphate 3 epimerase family M479_3321 PF02086 D12 class N6 adenine-specific DNA methyltransferase M479_3322 PF05036 Sporulation related domain M479_3323 PF01761 3-dehydroquinate synthase M479_3324 PF01202 Shikimate kinase M479_3325 PF00263 Bacterial type II and III secretion system protein M479_3325 PF03958 Bacterial type II/III secretion system short domain M479_333 PF07214 Protein of unknown function (DUF1418) M479_3330 PF00905 Penicillin binding protein transpeptidase domain M479_3330 PF00912 Transglycosylase M479_3330 PF17092 Penicillin-binding protein OB-like domain M479_3331 PF00293 NUDIX domain M479_3333 PF07095 Intracellular growth attenuator protein IgaA M479_3334 PF13419 Haloacid dehalogenase-like hydrolase M479_3335 PF01479 S4 domain M479_3336 PF01430 Hsp33 protein M479_3337 PF01293 Phosphoenolpyruvate carboxykinase M479_3338 PF00512 His Kinase A (phospho-acceptor) domain M479_3338 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M479_3338 PF00672 HAMP domain M479_3339 PF00072 Response regulator receiver domain M479_3339 PF00486 Transcriptional regulatory protein, C terminal M479_334 PF10722 Putative bacterial sensory transduction regulator M479_3340 PF01272 Transcription elongation factor, GreA/GreB, C-term M479_3340 PF03449 Transcription elongation factor, N-terminal M479_3341 PF16921 Tex protein YqgF-like domain M479_3341 PF17674 HHH domain M479_3341 PF09371 Tex-like protein N-terminal domain M479_3341 PF00575 S1 RNA binding domain M479_3342 PF04023 FeoA domain M479_3343 PF07670 Nucleoside recognition M479_3343 PF02421 Ferrous iron transport protein B M479_3343 PF17910 FeoB cytosolic helical domain M479_3343 PF07664 Ferrous iron transport protein B C terminus M479_3344 PF09012 FeoC like transcriptional regulator M479_3345 PF07338 Protein of unknown function (DUF1471) M479_3346 PF00561 alpha/beta hydrolase fold M479_3347 PF00156 Phosphoribosyl transferase domain M479_3348 PF01521 Iron-sulphur cluster biosynthesis M479_3348 PF01106 NifU-like domain M479_3349 PF02446 4-alpha-glucanotransferase M479_335 PF13416 Bacterial extracellular solute-binding protein M479_3350 PF00343 Carbohydrate phosphorylase M479_3351 PF00196 Bacterial regulatory proteins, luxR family M479_3351 PF17874 MalT-like TPR region M479_3352 PF00581 Rhodanese-like domain M479_3353 PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease M479_3353 PF01694 Rhomboid family M479_3354 PF00455 DeoR C terminal sensor domain M479_3354 PF08220 DeoR-like helix-turn-helix domain M479_3356 PF00665 Integrase core domain M479_3356 PF13276 HTH-like domain M479_3356 PF13333 Integrase core domain M479_3357 PF07690 Major Facilitator Superfamily M479_336 PF00005 ABC transporter M479_336 PF08402 TOBE domain M479_3361 PF00872 Transposase, Mutator family M479_3362 PF13700 Domain of unknown function (DUF4158) M479_3362 PF01526 Tn3 transposase DDE domain M479_3363 PF09106 Elongation factor SelB, winged helix M479_3363 PF03144 Elongation factor Tu domain 2 M479_3363 PF09107 Elongation factor SelB, winged helix M479_3363 PF00009 Elongation factor Tu GTP binding domain M479_3364 PF03841 L-seryl-tRNA selenium transferase M479_3364 PF12390 Selenocysteine synthase N terminal M479_3365 PF04216 Protein involved in formate dehydrogenase formation M479_3366 PF01292 Prokaryotic cytochrome b561 M479_3367 PF09163 Formate dehydrogenase N, transmembrane M479_3367 PF13247 4Fe-4S dicluster domain M479_3368 PF01568 Molydopterin dinucleotide binding domain M479_3368 PF00384 Molybdopterin oxidoreductase M479_3368 PF04879 Molybdopterin oxidoreductase Fe4S4 domain M479_3369 PF01568 Molydopterin dinucleotide binding domain M479_3369 PF00384 Molybdopterin oxidoreductase M479_3369 PF04879 Molybdopterin oxidoreductase Fe4S4 domain M479_337 PF00528 Binding-protein-dependent transport system inner membrane component M479_3370 PF02634 FdhD/NarQ family M479_3371 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain M479_3371 PF02777 Iron/manganese superoxide dismutases, C-terminal domain M479_3372 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain M479_3372 PF00672 HAMP domain M479_3372 PF02203 Tar ligand binding domain homologue M479_3376 PF10928 Protein of unknown function (DUF2810) M479_3378 PF05068 Mannitol repressor M479_3379 PF08125 Mannitol dehydrogenase C-terminal domain M479_3379 PF01232 Mannitol dehydrogenase Rossmann domain M479_338 PF00528 Binding-protein-dependent transport system inner membrane component M479_3380 PF02378 Phosphotransferase system, EIIC M479_3380 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit M479_3380 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 M479_3381 PF11254 Protein of unknown function (DUF3053) M479_3382 PF05746 DALR anticodon binding domain M479_3382 PF02092 Glycyl-tRNA synthetase beta subunit M479_3383 PF02091 Glycyl-tRNA synthetase alpha subunit M479_3385 PF03352 Methyladenine glycosylase M479_3387 PF13488 Glycine zipper M479_3387 PF00691 OmpA family M479_3389 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain M479_3389 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain M479_339 PF10767 Protein of unknown function (DUF2593) M479_3390 PF00128 Alpha amylase, catalytic domain M479_3392 PF00155 Aminotransferase class I and II M479_3393 PF02080 TrkA-C domain M479_3393 PF06826 Predicted Permease Membrane Region M479_3394 PF00011 Hsp20/alpha crystallin family M479_3395 PF00011 Hsp20/alpha crystallin family M479_3396 PF07119 Protein of unknown function (DUF1375) M479_3397 PF07676 WD40-like Beta Propeller Repeat M479_3397 PF12566 Protein of unknown function (DUF3748) M479_3398 PF12566 Protein of unknown function (DUF3748) M479_3398 PF07676 WD40-like Beta Propeller Repeat M479_3399 PF00291 Pyridoxal-phosphate dependent enzyme M479_3399 PF13291 ACT domain M479_34 PF05036 Sporulation related domain M479_34 PF03330 Lytic transglycolase M479_340 PF05958 tRNA (Uracil-5-)-methyltransferase M479_3400 PF02423 Ornithine cyclodeaminase/mu-crystallin family M479_3402 PF00665 Integrase core domain M479_3402 PF13333 Integrase core domain M479_3402 PF13276 HTH-like domain M479_3404 PF18053 DNA gyrase B subunit insert domain M479_3404 PF01751 Toprim domain M479_3404 PF00986 DNA gyrase B subunit, carboxyl terminus M479_3404 PF00204 DNA gyrase B M479_3404 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M479_3405 PF02463 RecF/RecN/SMC N terminal domain M479_3406 PF00712 DNA polymerase III beta subunit, N-terminal domain M479_3406 PF02767 DNA polymerase III beta subunit, central domain M479_3406 PF02768 DNA polymerase III beta subunit, C-terminal domain M479_3407 PF00308 Bacterial dnaA protein M479_3407 PF08299 Bacterial dnaA protein helix-turn-helix M479_3407 PF11638 DnaA N-terminal domain M479_3409 PF00468 Ribosomal protein L34 M479_3410 PF00825 Ribonuclease P M479_3411 PF01809 Putative membrane protein insertion efficiency factor M479_3412 PF14849 YidC periplasmic domain M479_3412 PF02096 60Kd inner membrane protein M479_3413 PF10396 GTP-binding protein TrmE N-terminus M479_3413 PF01926 50S ribosome-binding GTPase M479_3413 PF12631 MnmE helical domain M479_3414 PF12241 Trans-2-enoyl-CoA reductase catalytic region M479_3414 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase M479_3414 PF07055 Enoyl reductase FAD binding domain M479_3417 PF00860 Permease family M479_3418 PF13419 Haloacid dehalogenase-like hydrolase M479_3419 PF00528 Binding-protein-dependent transport system inner membrane component M479_3420 PF00528 Binding-protein-dependent transport system inner membrane component M479_3421 PF00497 Bacterial extracellular solute-binding proteins, family 3 M479_3423 PF01895 PhoU domain M479_3424 PF00005 ABC transporter M479_3425 PF00528 Binding-protein-dependent transport system inner membrane component M479_3426 PF00528 Binding-protein-dependent transport system inner membrane component M479_3427 PF12849 PBP superfamily domain M479_3428 PF01380 SIS domain M479_3429 PF00132 Bacterial transferase hexapeptide (six repeats) M479_3429 PF12804 MobA-like NTP transferase domain M479_3430 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain M479_3430 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain M479_3431 PF02874 ATP synthase alpha/beta family, beta-barrel domain M479_3431 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain M479_3432 PF00231 ATP synthase M479_3433 PF02874 ATP synthase alpha/beta family, beta-barrel domain M479_3433 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain M479_3433 PF00306 ATP synthase alpha/beta chain, C terminal domain M479_3434 PF00213 ATP synthase delta (OSCP) subunit M479_3435 PF00430 ATP synthase B/B' CF(0) M479_3436 PF00137 ATP synthase subunit C M479_3437 PF00119 ATP synthase A chain M479_3438 PF03899 ATP synthase I chain M479_3439 PF02527 rRNA small subunit methyltransferase G M479_3440 PF13932 GidA associated domain M479_3440 PF01134 Glucose inhibited division protein A M479_3441 PF00258 Flavodoxin M479_3442 PF01037 Lrp/AsnC ligand binding domain M479_3443 PF03590 Aspartate-ammonia ligase M479_3444 PF05762 VWA domain containing CoxE-like protein M479_3445 PF07728 AAA domain (dynein-related subfamily) M479_3445 PF17868 AAA lid domain M479_3445 PF12592 Protein of unknown function (DUF3763) M479_3446 PF02705 K+ potassium transporter M479_3447 PF05025 RbsD / FucU transport protein family M479_3448 PF00294 pfkB family carbohydrate kinase M479_3449 PF00294 pfkB family carbohydrate kinase M479_345 PF01032 FecCD transport family M479_3450 PF07690 Major Facilitator Superfamily M479_3452 PF00392 Bacterial regulatory proteins, gntR family M479_3452 PF07729 FCD domain M479_3457 PF00872 Transposase, Mutator family M479_3458 PF03205 Molybdopterin guanine dinucleotide synthesis protein B M479_3459 PF12804 MobA-like NTP transferase domain M479_346 PF00005 ABC transporter M479_3460 PF06288 Protein of unknown function (DUF1040) M479_3461 PF01636 Phosphotransferase enzyme family M479_3462 PF01323 DSBA-like thioredoxin domain M479_3463 PF01612 3'-5' exonuclease M479_3463 PF00476 DNA polymerase family A M479_3463 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain M479_3463 PF01367 5'-3' exonuclease, C-terminal SAM fold M479_3464 PF01926 50S ribosome-binding GTPase M479_3465 PF04220 Der GTPase activator (YihI) M479_3466 PF06969 HemN C-terminal domain M479_3466 PF04055 Radical SAM superfamily M479_3467 PF00158 Sigma-54 interaction domain M479_3467 PF00072 Response regulator receiver domain M479_3467 PF02954 Bacterial regulatory protein, Fis family M479_3468 PF00989 PAS fold M479_3468 PF00512 His Kinase A (phospho-acceptor) domain M479_3468 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M479_3469 PF00120 Glutamine synthetase, catalytic domain M479_3469 PF03951 Glutamine synthetase, beta-Grasp domain M479_347 PF03059 Nicotianamine synthase protein M479_3471 PF13419 Haloacid dehalogenase-like hydrolase M479_3472 PF03631 Virulence factor BrkB M479_3473 PF02580 D-Tyr-tRNA(Tyr) deacylase M479_3474 PF01695 IstB-like ATP binding protein M479_3475 PF02796 Helix-turn-helix domain of resolvase M479_3475 PF00665 Integrase core domain M479_3476 PF09500 Putative thioesterase (yiiD_Cterm) M479_3476 PF00583 Acetyltransferase (GNAT) family M479_3477 PF05170 AsmA family M479_3478 PF00860 Permease family M479_3479 PF03616 Sodium/glutamate symporter M479_348 PF10100 Staphylopine dehydrogenase M479_3480 PF17191 RecG wedge domain M479_3480 PF00271 Helicase conserved C-terminal domain M479_3480 PF00270 DEAD/DEAH box helicase M479_3481 PF00588 SpoU rRNA Methylase family M479_3481 PF12105 SpoU, rRNA methylase, C-terminal M479_3482 PF04607 Region found in RelA / SpoT proteins M479_3482 PF13291 ACT domain M479_3482 PF02824 TGS domain M479_3483 PF01192 RNA polymerase Rpb6 M479_3484 PF00625 Guanylate kinase M479_3485 PF03120 NAD-dependent DNA ligase OB-fold domain M479_3485 PF01653 NAD-dependent DNA ligase adenylation domain M479_3486 PF03458 UPF0126 domain M479_3487 PF03755 YicC-like family, N-terminal region M479_3487 PF08340 Domain of unknown function (DUF1732) M479_3488 PF01138 3' exoribonuclease family, domain 1 M479_3488 PF03725 3' exoribonuclease family, domain 2 M479_3489 PF00156 Phosphoribosyl transferase domain M479_349 PF00892 EamA-like transporter family M479_3490 PF00440 Bacterial regulatory proteins, tetR family M479_3491 PF00692 dUTPase M479_3492 PF04127 DNA / pantothenate metabolism flavoprotein M479_3492 PF02441 Flavoprotein M479_3493 PF04002 RadC-like JAB domain M479_3494 PF00830 Ribosomal L28 family M479_3495 PF00471 Ribosomal protein L33 M479_3496 PF01467 Cytidylyltransferase-like M479_3497 PF06827 Zinc finger found in FPG and IleRS M479_3497 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain M479_3497 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain M479_3498 PF00535 Glycosyl transferase family 2 M479_3499 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) M479_35 PF01098 Cell cycle protein M479_350 PF00528 Binding-protein-dependent transport system inner membrane component M479_3500 PF01075 Glycosyltransferase family 9 (heptosyltransferase) M479_3501 PF01075 Glycosyltransferase family 9 (heptosyltransferase) M479_3502 PF01370 NAD dependent epimerase/dehydratase family M479_3503 PF00155 Aminotransferase class I and II M479_3504 PF00107 Zinc-binding dehydrogenase M479_3504 PF08240 Alcohol dehydrogenase GroES-like domain M479_3505 PF04748 Divergent polysaccharide deacetylase M479_3506 PF04748 Divergent polysaccharide deacetylase M479_3507 PF01551 Peptidase family M23 M479_3508 PF06415 BPG-independent PGAM N-terminus (iPGM_N) M479_3508 PF01676 Metalloenzyme superfamily M479_3509 PF00581 Rhodanese-like domain M479_351 PF00528 Binding-protein-dependent transport system inner membrane component M479_3510 PF00462 Glutaredoxin M479_3511 PF02556 Preprotein translocase subunit SecB M479_3512 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus M479_3512 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus M479_3513 PF00132 Bacterial transferase hexapeptide (six repeats) M479_3513 PF06426 Serine acetyltransferase, N-terminal M479_3514 PF00588 SpoU rRNA Methylase family M479_3515 PF02805 Metal binding domain of Ada M479_3515 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain M479_3515 PF12833 Helix-turn-helix domain M479_3515 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain M479_3516 PF16527 Two-component sensor protein CpxA, periplasmic domain M479_3516 PF00672 HAMP domain M479_3516 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M479_3516 PF00512 His Kinase A (phospho-acceptor) domain M479_3517 PF00486 Transcriptional regulatory protein, C terminal M479_3517 PF00072 Response regulator receiver domain M479_3518 PF07813 LTXXQ motif family protein M479_3519 PF04754 Putative transposase, YhgA-like M479_352 PF00497 Bacterial extracellular solute-binding proteins, family 3 M479_3520 PF01545 Cation efflux family M479_3520 PF16916 Dimerisation domain of Zinc Transporter M479_3521 PF00365 Phosphofructokinase M479_3525 PF00939 Sodium:sulfate symporter transmembrane region M479_3526 PF00939 Sodium:sulfate symporter transmembrane region M479_3527 PF03737 Aldolase/RraA M479_3528 PF02585 GlcNAc-PI de-N-acetylase M479_3529 PF03466 LysR substrate binding domain M479_3529 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M479_353 PF00005 ABC transporter M479_3530 PF00121 Triosephosphate isomerase M479_3531 PF07305 Protein of unknown function (DUF1454) M479_3532 PF05656 Protein of unknown function (DUF805) M479_3533 PF00970 Oxidoreductase FAD-binding domain M479_3533 PF00175 Oxidoreductase NAD-binding domain M479_3534 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded M479_3535 PF00370 FGGY family of carbohydrate kinases, N-terminal domain M479_3535 PF02782 FGGY family of carbohydrate kinases, C-terminal domain M479_3536 PF00230 Major intrinsic protein M479_3537 PF06005 Cell division protein ZapB M479_3539 PF03412 Peptidase C39 family M479_3539 PF00005 ABC transporter M479_3539 PF00664 ABC transporter transmembrane region M479_354 PF01817 Chorismate mutase type II M479_3540 PF00529 HlyD membrane-fusion protein of T1SS M479_3540 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion M479_3543 PF03737 Aldolase/RraA M479_3544 PF01040 UbiA prenyltransferase family M479_3545 PF10431 C-terminal, D2-small domain, of ClpB protein M479_3545 PF07724 AAA domain (Cdc48 subfamily) M479_3545 PF00004 ATPase family associated with various cellular activities (AAA) M479_3546 PF00227 Proteasome subunit M479_3547 PF05036 Sporulation related domain M479_3548 PF00356 Bacterial regulatory proteins, lacI family M479_355 PF12883 Protein of unknown function (DUF3828) M479_3550 PF18319 PriA DNA helicase Cys-rich region (CRR) domain M479_3550 PF00270 DEAD/DEAH box helicase M479_3550 PF00271 Helicase conserved C-terminal domain M479_3550 PF17764 3′ DNA-binding domain (3′BD) M479_3550 PF18074 Primosomal protein N C-terminal domain M479_3551 PF01197 Ribosomal protein L31 M479_3552 PF05360 yiaA/B two helix domain M479_3553 PF01340 Met Apo-repressor, MetJ M479_3554 PF01053 Cys/Met metabolism PLP-dependent enzyme M479_3555 PF00742 Homoserine dehydrogenase M479_3555 PF03447 Homoserine dehydrogenase, NAD binding domain M479_3555 PF00696 Amino acid kinase family M479_3556 PF02219 Methylenetetrahydrofolate reductase M479_3557 PF00665 Integrase core domain M479_3557 PF13276 HTH-like domain M479_3557 PF13333 Integrase core domain M479_356 PF01370 NAD dependent epimerase/dehydratase family M479_3560 PF01757 Acyltransferase family M479_3561 PF00419 Fimbrial protein M479_3562 PF13954 PapC N-terminal domain M479_3562 PF13953 PapC C-terminal domain M479_3562 PF00577 Outer membrane usher protein M479_3563 PF00577 Outer membrane usher protein M479_3563 PF13953 PapC C-terminal domain M479_3563 PF13954 PapC N-terminal domain M479_3564 PF02753 Pili assembly chaperone PapD, C-terminal domain M479_3564 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain M479_3566 PF02782 FGGY family of carbohydrate kinases, C-terminal domain M479_3566 PF00370 FGGY family of carbohydrate kinases, N-terminal domain M479_3568 PF13407 Periplasmic binding protein domain M479_3569 PF00005 ABC transporter M479_357 PF13460 NAD(P)H-binding M479_357 PF11066 Protein of unknown function (DUF2867) M479_3570 PF02653 Branched-chain amino acid transport system / permease component M479_3571 PF12833 Helix-turn-helix domain M479_3573 PF13356 Arm DNA-binding domain M479_3573 PF14659 Phage integrase, N-terminal SAM-like domain M479_3573 PF00589 Phage integrase family M479_3575 PF04606 Ogr/Delta-like zinc finger M479_3576 PF13737 Transposase DDE domain M479_3577 PF13737 Transposase DDE domain M479_358 PF01212 Beta-eliminating lyase M479_3580 PF00005 ABC transporter M479_3582 PF01032 FecCD transport family M479_3583 PF01032 FecCD transport family M479_3584 PF01497 Periplasmic binding protein M479_3587 PF00156 Phosphoribosyl transferase domain M479_3588 PF00291 Pyridoxal-phosphate dependent enzyme M479_3589 PF17391 Urocanase N-terminal domain M479_3589 PF01175 Urocanase Rossmann-like domain M479_3589 PF17392 Urocanase C-terminal domain M479_359 PF00205 Thiamine pyrophosphate enzyme, central domain M479_359 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain M479_359 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain M479_3590 PF00221 Aromatic amino acid lyase M479_3591 PF00324 Amino acid permease M479_3592 PF12146 Serine aminopeptidase, S33 M479_3593 PF02796 Helix-turn-helix domain of resolvase M479_3593 PF00665 Integrase core domain M479_3594 PF01695 IstB-like ATP binding protein M479_3595 PF01695 IstB-like ATP binding protein M479_36 PF00905 Penicillin binding protein transpeptidase domain M479_36 PF03717 Penicillin-binding Protein dimerisation domain M479_360 PF00111 2Fe-2S iron-sulfur cluster binding domain M479_360 PF00970 Oxidoreductase FAD-binding domain M479_360 PF00175 Oxidoreductase NAD-binding domain M479_3600 PF03143 Elongation factor Tu C-terminal domain M479_3600 PF00009 Elongation factor Tu GTP binding domain M479_3600 PF03144 Elongation factor Tu domain 2 M479_3601 PF00584 SecE/Sec61-gamma subunits of protein translocation complex M479_3602 PF00467 KOW motif M479_3602 PF02357 Transcription termination factor nusG M479_3603 PF00298 Ribosomal protein L11, RNA binding domain M479_3603 PF03946 Ribosomal protein L11, N-terminal domain M479_3604 PF00687 Ribosomal protein L1p/L10e family M479_3605 PF00466 Ribosomal protein L10 M479_3606 PF16320 Ribosomal protein L7/L12 dimerisation domain M479_3606 PF00542 Ribosomal protein L7/L12 C-terminal domain M479_3608 PF04560 RNA polymerase Rpb2, domain 7 M479_3608 PF04563 RNA polymerase beta subunit M479_3608 PF10385 RNA polymerase beta subunit external 1 domain M479_3608 PF04565 RNA polymerase Rpb2, domain 3 M479_3608 PF04561 RNA polymerase Rpb2, domain 2 M479_3608 PF00562 RNA polymerase Rpb2, domain 6 M479_3609 PF04998 RNA polymerase Rpb1, domain 5 M479_3609 PF04997 RNA polymerase Rpb1, domain 1 M479_3609 PF00623 RNA polymerase Rpb1, domain 2 M479_3609 PF04983 RNA polymerase Rpb1, domain 3 M479_3609 PF05000 RNA polymerase Rpb1, domain 4 M479_361 PF03063 Prismane/CO dehydrogenase family M479_3610 PF04055 Radical SAM superfamily M479_3610 PF06968 Biotin and Thiamin Synthesis associated domain M479_3611 PF06968 Biotin and Thiamin Synthesis associated domain M479_3611 PF04055 Radical SAM superfamily M479_3612 PF05690 Thiazole biosynthesis protein ThiG M479_3613 PF05690 Thiazole biosynthesis protein ThiG M479_3615 PF00899 ThiF family M479_3616 PF02581 Thiamine monophosphate synthase M479_3617 PF01964 Radical SAM ThiC family M479_3617 PF13667 ThiC-associated domain M479_3618 PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ M479_3619 PF09297 NADH pyrophosphatase zinc ribbon domain M479_3619 PF00293 NUDIX domain M479_362 PF03956 Lysine exporter LysO M479_3621 PF01208 Uroporphyrinogen decarboxylase (URO-D) M479_3622 PF04493 Endonuclease V M479_3623 PF04222 Protein of unknown function (DUF416) M479_3624 PF00216 Bacterial DNA-binding protein M479_3625 PF07356 Protein of unknown function (DUF1481) M479_3626 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain M479_3626 PF02844 Phosphoribosylglycinamide synthetase, N domain M479_3626 PF02843 Phosphoribosylglycinamide synthetase, C domain M479_3627 PF02142 MGS-like domain M479_3627 PF01808 AICARFT/IMPCHase bienzyme M479_363 PF11398 Protein of unknown function (DUF2813) M479_3636 PF13407 Periplasmic binding protein domain M479_3637 PF00005 ABC transporter M479_3638 PF02653 Branched-chain amino acid transport system / permease component M479_3639 PF03466 LysR substrate binding domain M479_3639 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M479_364 PF04393 Protein of unknown function (DUF535) M479_3640 PF02653 Branched-chain amino acid transport system / permease component M479_3641 PF04219 Protein of unknown function, DUF M479_3642 PF01078 Magnesium chelatase, subunit ChlI M479_3642 PF13335 Magnesium chelatase, subunit ChlI C-terminal M479_3643 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain M479_3643 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain M479_3643 PF00205 Thiamine pyrophosphate enzyme, central domain M479_3645 PF01063 Amino-transferase class IV M479_3646 PF00920 Dehydratase family M479_3647 PF00291 Pyridoxal-phosphate dependent enzyme M479_3647 PF00585 C-terminal regulatory domain of Threonine dehydratase M479_365 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion M479_3653 PF03466 LysR substrate binding domain M479_3653 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M479_3654 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain M479_3654 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain M479_3659 PF01320 Colicin immunity protein / pyocin immunity protein M479_366 PF02687 FtsX-like permease family M479_366 PF12704 MacB-like periplasmic core domain M479_366 PF00005 ABC transporter M479_3660 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain M479_3660 PF02753 Pili assembly chaperone PapD, C-terminal domain M479_3662 PF13953 PapC C-terminal domain M479_3662 PF00577 Outer membrane usher protein M479_3662 PF13954 PapC N-terminal domain M479_3663 PF02753 Pili assembly chaperone PapD, C-terminal domain M479_3663 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain M479_3667 PF13361 UvrD-like helicase C-terminal domain M479_3667 PF00580 UvrD/REP helicase N-terminal domain M479_3668 PF02541 Ppx/GppA phosphatase family M479_3669 PF00270 DEAD/DEAH box helicase M479_3669 PF00271 Helicase conserved C-terminal domain M479_367 PF00313 'Cold-shock' DNA-binding domain M479_3670 PF00085 Thioredoxin M479_3671 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain M479_3671 PF07498 Rho termination factor, N-terminal domain M479_3671 PF07497 Rho termination factor, RNA-binding domain M479_3672 PF00953 Glycosyl transferase family 4 M479_3673 PF02706 Chain length determinant protein M479_3674 PF02350 UDP-N-acetylglucosamine 2-epimerase M479_3675 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain M479_3675 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain M479_3675 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain M479_3676 PF16363 GDP-mannose 4,6 dehydratase M479_3677 PF00483 Nucleotidyl transferase M479_3679 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family M479_368 PF02617 ATP-dependent Clp protease adaptor protein ClpS M479_3680 PF01943 Polysaccharide biosynthesis protein M479_3681 PF07429 4-alpha-L-fucosyltransferase glycosyl transferase group 56 M479_3682 PF06899 WzyE protein, O-antigen assembly polymerase M479_3683 PF03808 Glycosyl transferase WecB/TagA/CpsF family M479_3684 PF00324 Amino acid permease M479_369 PF17871 AAA lid domain M479_369 PF07724 AAA domain (Cdc48 subfamily) M479_369 PF02861 Clp amino terminal domain, pathogenicity island component M479_369 PF00004 ATPase family associated with various cellular activities (AAA) M479_369 PF10431 C-terminal, D2-small domain, of ClpB protein M479_3691 PF07719 Tetratricopeptide repeat M479_3691 PF07219 HemY protein N-terminus M479_3692 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase M479_3693 PF02602 Uroporphyrinogen-III synthase HemD M479_3694 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain M479_3694 PF03900 Porphobilinogen deaminase, C-terminal domain M479_3695 PF12633 Adenylate cyclase NT domain M479_3695 PF01295 Adenylate cyclase, class-I M479_3696 PF01491 Frataxin-like domain M479_3697 PF13627 Prokaryotic lipoprotein-attachment site M479_3698 PF01678 Diaminopimelate epimerase M479_3699 PF04340 Protein of unknown function, DUF484 M479_37 PF02590 Predicted SPOUT methyltransferase M479_3700 PF02899 Phage integrase, N-terminal SAM-like domain M479_3700 PF00589 Phage integrase family M479_3701 PF13419 Haloacid dehalogenase-like hydrolase M479_3702 PF00580 UvrD/REP helicase N-terminal domain M479_3702 PF13361 UvrD-like helicase C-terminal domain M479_3705 PF09370 Phosphoenolpyruvate hydrolase-like M479_3706 PF01544 CorA-like Mg2+ transporter protein M479_3707 PF00892 EamA-like transporter family M479_3708 PF03061 Thioesterase superfamily M479_3709 PF02253 Phospholipase A1 M479_371 PF01176 Translation initiation factor 1A / IF-1 M479_3710 PF09382 RQC domain M479_3710 PF16124 RecQ zinc-binding M479_3710 PF00570 HRDC domain M479_3710 PF00271 Helicase conserved C-terminal domain M479_3710 PF00270 DEAD/DEAH box helicase M479_3711 PF01810 LysE type translocator M479_3712 PF01810 LysE type translocator M479_3713 PF12146 Serine aminopeptidase, S33 M479_3716 PF03009 Glycerophosphoryl diester phosphodiesterase family M479_3717 PF04324 BFD-like [2Fe-2S] binding domain M479_3717 PF01266 FAD dependent oxidoreductase M479_3718 PF00890 FAD binding domain M479_3719 PF02754 Cysteine-rich domain M479_3719 PF13183 4Fe-4S dicluster domain M479_372 PF03588 Leucyl/phenylalanyl-tRNA protein transferase M479_3720 PF08786 DcrB M479_3721 PF02592 Putative vitamin uptake transporter M479_3722 PF01206 Sulfurtransferase TusA M479_3723 PF00403 Heavy-metal-associated domain M479_3724 PF07947 YhhN family M479_3727 PF06611 Protein of unknown function (DUF1145) M479_3729 PF02881 SRP54-type protein, helical bundle domain M479_3729 PF00448 SRP54-type protein, GTPase domain M479_3729 PF02881 SRP54-type protein, helical bundle domain M479_3729 PF00448 SRP54-type protein, GTPase domain M479_373 PF00005 ABC transporter M479_373 PF00664 ABC transporter transmembrane region M479_3730 PF00005 ABC transporter M479_3731 PF18075 FtsX extracellular domain M479_3731 PF02687 FtsX-like permease family M479_3732 PF04542 Sigma-70 region 2 M479_3732 PF04545 Sigma-70, region 4 M479_3732 PF00140 Sigma-70 factor, region 1.2 M479_3733 PF01797 Transposase IS200 like M479_3734 PF12568 Acetyltransferase (GNAT) domain, PanZ M479_3735 PF13458 Periplasmic binding protein M479_3736 PF02653 Branched-chain amino acid transport system / permease component M479_3737 PF02653 Branched-chain amino acid transport system / permease component M479_3737 PF11862 Domain of unknown function (DUF3382) M479_3738 PF00005 ABC transporter M479_3738 PF12399 Branched-chain amino acid ATP-binding cassette transporter M479_3739 PF00005 ABC transporter M479_374 PF00005 ABC transporter M479_374 PF00664 ABC transporter transmembrane region M479_3747 PF13416 Bacterial extracellular solute-binding protein M479_3748 PF00528 Binding-protein-dependent transport system inner membrane component M479_3749 PF00528 Binding-protein-dependent transport system inner membrane component M479_375 PF07992 Pyridine nucleotide-disulphide oxidoreductase M479_3750 PF00005 ABC transporter M479_3750 PF17912 MalK OB fold domain M479_3751 PF03009 Glycerophosphoryl diester phosphodiesterase family M479_3752 PF03547 Membrane transport protein M479_3753 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M479_3753 PF03466 LysR substrate binding domain M479_3754 PF00892 EamA-like transporter family M479_3755 PF08267 Cobalamin-independent synthase, N-terminal domain M479_3755 PF01717 Cobalamin-independent synthase, Catalytic domain M479_3756 PF01738 Dienelactone hydrolase family M479_3757 PF01048 Phosphorylase superfamily M479_3759 PF13722 5TM C-terminal transporter carbon starvation CstA M479_3759 PF02554 Carbon starvation protein CstA M479_376 PF01037 Lrp/AsnC ligand binding domain M479_3760 PF09335 SNARE associated Golgi protein M479_3761 PF02646 RmuC family M479_3762 PF01209 ubiE/COQ5 methyltransferase family M479_3763 PF02036 SCP-2 sterol transfer family M479_3764 PF03109 ABC1 family M479_3765 PF02416 mttA/Hcf106 family M479_3767 PF00902 Sec-independent protein translocase protein (TatC) M479_3768 PF01026 TatD related DNase M479_3769 PF00490 Delta-aminolevulinic acid dehydratase M479_377 PF17854 FtsK alpha domain M479_377 PF13491 4TM region of DNA translocase FtsK/SpoIIIE M479_377 PF01580 FtsK/SpoIIIE family M479_377 PF09397 Ftsk gamma domain M479_3770 PF02357 Transcription termination factor nusG M479_3771 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase M479_3772 PF00970 Oxidoreductase FAD-binding domain M479_3772 PF00175 Oxidoreductase NAD-binding domain M479_3773 PF02803 Thiolase, C-terminal domain M479_3773 PF00108 Thiolase, N-terminal domain M479_3774 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain M479_3774 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain M479_3774 PF00378 Enoyl-CoA hydratase/isomerase M479_3775 PF00557 Metallopeptidase family M24 M479_3776 PF01205 Uncharacterized protein family UPF0029 M479_3776 PF09186 Domain of unknown function (DUF1949) M479_3777 PF02386 Cation transport protein M479_3778 PF12724 Flavodoxin domain M479_378 PF03548 Outer membrane lipoprotein carrier protein LolA M479_3784 PF01565 FAD binding domain M479_3784 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain M479_3785 PF03099 Biotin/lipoate A/B protein ligase family M479_3785 PF02237 Biotin protein ligase C terminal domain M479_3785 PF08279 HTH domain M479_3786 PF00485 Phosphoribulokinase / Uridine kinase family M479_3787 PF13673 Acetyltransferase (GNAT) domain M479_3788 PF02796 Helix-turn-helix domain of resolvase M479_3788 PF00665 Integrase core domain M479_3789 PF01695 IstB-like ATP binding protein M479_3790 PF00326 Prolyl oligopeptidase family M479_3792 PF01250 Ribosomal protein S6 M479_3793 PF01084 Ribosomal protein S18 M479_3794 PF03948 Ribosomal protein L9, C-terminal domain M479_3794 PF01281 Ribosomal protein L9, N-terminal domain M479_3795 PF01797 Transposase IS200 like M479_3797 PF08525 Opacity-associated protein A N-terminal motif M479_3797 PF04225 Opacity-associated protein A LysM-like domain M479_3798 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase M479_3798 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase M479_3799 PF01814 Hemerythrin HHE cation binding domain M479_3799 PF04405 Domain of Unknown function (DUF542) M479_380 PF16193 AAA C-terminal domain M479_380 PF12002 MgsA AAA+ ATPase C terminal M479_380 PF00004 ATPase family associated with various cellular activities (AAA) M479_3800 PF00149 Calcineurin-like phosphoesterase M479_3800 PF02872 5'-nucleotidase, C-terminal domain M479_3801 PF00459 Inositol monophosphatase family M479_3802 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) M479_3803 PF06526 Protein of unknown function (DUF1107) M479_3804 PF03471 Transporter associated domain M479_3804 PF00571 CBS domain M479_3804 PF01595 Cyclin M transmembrane N-terminal domain M479_3805 PF01625 Peptide methionine sulfoxide reductase M479_3806 PF17243 POTRA domain TamA domain 1 M479_3806 PF01103 Surface antigen M479_3806 PF07244 Surface antigen variable number repeat M479_3807 PF04357 TamB, inner membrane protein subunit of TAM complex M479_3808 PF06094 Gamma-glutamyl cyclotransferase, AIG2-like M479_3809 PF00719 Inorganic pyrophosphatase M479_381 PF02403 Seryl-tRNA synthetase N-terminal domain M479_381 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) M479_3810 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain M479_3811 PF08245 Mur ligase middle domain M479_3811 PF02875 Mur ligase family, glutamate ligase domain M479_3811 PF01225 Mur ligase family, catalytic domain M479_3813 PF01316 Arginine repressor, DNA binding domain M479_3813 PF02863 Arginine repressor, C-terminal domain M479_3814 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain M479_3814 PF00056 lactate/malate dehydrogenase, NAD binding domain M479_3815 PF13693 Winged helix-turn-helix DNA-binding M479_3817 PF00348 Polyprenyl synthetase M479_3818 PF00829 Ribosomal prokaryotic L21 protein M479_3819 PF01016 Ribosomal L27 protein M479_382 PF07690 Major Facilitator Superfamily M479_3820 PF00892 EamA-like transporter family M479_3821 PF01018 GTP1/OBG M479_3821 PF01926 50S ribosome-binding GTPase M479_3822 PF00672 HAMP domain M479_3822 PF00512 His Kinase A (phospho-acceptor) domain M479_3822 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M479_3823 PF00072 Response regulator receiver domain M479_3823 PF00486 Transcriptional regulatory protein, C terminal M479_3824 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family M479_3825 PF01272 Transcription elongation factor, GreA/GreB, C-term M479_3825 PF03449 Transcription elongation factor, N-terminal M479_3826 PF01985 CRS1 / YhbY (CRM) domain M479_3827 PF01728 FtsJ-like methyltransferase M479_3828 PF17862 AAA+ lid domain M479_3828 PF06480 FtsH Extracellular M479_3828 PF01434 Peptidase family M41 M479_3828 PF00004 ATPase family associated with various cellular activities (AAA) M479_3829 PF00809 Pterin binding enzyme M479_383 PF04055 Radical SAM superfamily M479_3830 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I M479_3830 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II M479_3830 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III M479_3830 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain M479_3831 PF03840 Preprotein translocase SecG subunit M479_3834 PF02576 RimP N-terminal domain M479_3834 PF17384 RimP C-terminal SH3 domain M479_3835 PF08529 NusA N-terminal domain M479_3835 PF00575 S1 RNA binding domain M479_3835 PF13184 NusA-like KH domain M479_3836 PF08364 Bacterial translation initiation factor IF-2 associated region M479_3836 PF03144 Elongation factor Tu domain 2 M479_3836 PF00009 Elongation factor Tu GTP binding domain M479_3836 PF11987 Translation-initiation factor 2 M479_3836 PF04760 Translation initiation factor IF-2, N-terminal region M479_3837 PF02033 Ribosome-binding factor A M479_3838 PF01509 TruB family pseudouridylate synthase (N terminal domain) M479_3838 PF16198 tRNA pseudouridylate synthase B C-terminal domain M479_3838 PF09157 Pseudouridine synthase II TruB, C-terminal M479_3839 PF00312 Ribosomal protein S15 M479_3840 PF00665 Integrase core domain M479_3840 PF13333 Integrase core domain M479_3840 PF13276 HTH-like domain M479_3842 PF00311 Phosphoenolpyruvate carboxylase M479_3843 PF01546 Peptidase family M20/M25/M40 M479_3843 PF07687 Peptidase dimerisation domain M479_3844 PF02774 Semialdehyde dehydrogenase, dimerisation domain M479_3844 PF01118 Semialdehyde dehydrogenase, NAD binding domain M479_3845 PF00696 Amino acid kinase family M479_3846 PF14698 Argininosuccinate lyase C-terminal M479_3846 PF00206 Lyase M479_3848 PF00593 TonB dependent receptor M479_3848 PF07715 TonB-dependent Receptor Plug Domain M479_385 PF02901 Pyruvate formate lyase-like M479_385 PF01228 Glycine radical M479_3850 PF00664 ABC transporter transmembrane region M479_3850 PF00005 ABC transporter M479_3851 PF00529 HlyD membrane-fusion protein of T1SS M479_3852 PF03544 Gram-negative bacterial TonB protein C-terminal M479_3853 PF07992 Pyridine nucleotide-disulphide oxidoreductase M479_3853 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain M479_3854 PF08534 Redoxin M479_3854 PF00462 Glutaredoxin M479_3855 PF07992 Pyridine nucleotide-disulphide oxidoreductase M479_3855 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain M479_3856 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M479_3856 PF03466 LysR substrate binding domain M479_3858 PF00440 Bacterial regulatory proteins, tetR family M479_3859 PF07226 Protein of unknown function (DUF1422) M479_386 PF01226 Formate/nitrite transporter M479_3860 PF05958 tRNA (Uracil-5-)-methyltransferase M479_3861 PF00593 TonB dependent receptor M479_3861 PF07715 TonB-dependent Receptor Plug Domain M479_3862 PF01177 Asp/Glu/Hydantoin racemase M479_3868 PF10043 Predicted periplasmic lipoprotein (DUF2279) M479_3869 PF13091 PLD-like domain M479_387 PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding M479_387 PF18381 YcaO cyclodehydratase C-terminal domain M479_3870 PF13380 CoA binding domain M479_3870 PF13607 Succinyl-CoA ligase like flavodoxin domain M479_3870 PF00583 Acetyltransferase (GNAT) family M479_3872 PF00085 Thioredoxin M479_3873 PF00588 SpoU rRNA Methylase family M479_3873 PF08032 RNA 2'-O ribose methyltransferase substrate binding M479_3874 PF07690 Major Facilitator Superfamily M479_3875 PF00529 HlyD membrane-fusion protein of T1SS M479_3875 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion M479_3876 PF01047 MarR family M479_3877 PF05437 Branched-chain amino acid transport protein (AzlD) M479_3878 PF03591 AzlC protein M479_3879 PF07690 Major Facilitator Superfamily M479_388 PF00710 Asparaginase, N-terminal M479_388 PF17763 Glutaminase/Asparaginase C-terminal domain M479_3881 PF01425 Amidase M479_3884 PF00497 Bacterial extracellular solute-binding proteins, family 3 M479_3885 PF00528 Binding-protein-dependent transport system inner membrane component M479_3887 PF00005 ABC transporter M479_3888 PF00266 Aminotransferase class-V M479_3889 PF01695 IstB-like ATP binding protein M479_389 PF05662 Coiled stalk of trimeric autotransporter adhesin M479_389 PF03895 YadA-like membrane anchor domain M479_389 PF05658 Head domain of trimeric autotransporter adhesin M479_389 PF13018 Extended Signal Peptide of Type V secretion system M479_389 PF05658 Head domain of trimeric autotransporter adhesin M479_389 PF03895 YadA-like membrane anchor domain M479_389 PF13018 Extended Signal Peptide of Type V secretion system M479_389 PF05662 Coiled stalk of trimeric autotransporter adhesin M479_3890 PF00665 Integrase core domain M479_3890 PF02796 Helix-turn-helix domain of resolvase M479_3891 PF00266 Aminotransferase class-V M479_3892 PF07687 Peptidase dimerisation domain M479_3892 PF01546 Peptidase family M20/M25/M40 M479_3893 PF00795 Carbon-nitrogen hydrolase M479_3894 PF00155 Aminotransferase class I and II M479_3895 PF00596 Class II Aldolase and Adducin N-terminal domain M479_3897 PF03079 ARD/ARD' family M479_3898 PF01008 Initiation factor 2 subunit family M479_3899 PF01636 Phosphotransferase enzyme family M479_39 PF01467 Cytidylyltransferase-like M479_3900 PF08479 POTRA domain, ShlB-type M479_3900 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB M479_3901 PF05860 haemagglutination activity domain M479_3902 PF18071 HMW1C N-terminal M479_3902 PF18254 HMW1 domain 2 M479_3905 PF00441 Acyl-CoA dehydrogenase, C-terminal domain M479_3905 PF02771 Acyl-CoA dehydrogenase, N-terminal domain M479_3905 PF09317 Domain of unknown function (DUF1974) M479_3906 PF13580 SIS domain M479_3907 PF03734 L,D-transpeptidase catalytic domain M479_3908 PF13230 Glutamine amidotransferases class-II M479_3909 PF11973 NQRA C-terminal domain M479_3909 PF05896 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) M479_391 PF00266 Aminotransferase class-V M479_3910 PF03116 NQR2, RnfD, RnfE family M479_3911 PF04205 FMN-binding domain M479_3912 PF02508 Rnf-Nqr subunit, membrane protein M479_3913 PF02508 Rnf-Nqr subunit, membrane protein M479_3914 PF00970 Oxidoreductase FAD-binding domain M479_3914 PF00111 2Fe-2S iron-sulfur cluster binding domain M479_3914 PF00175 Oxidoreductase NAD-binding domain M479_3915 PF02424 ApbE family M479_3917 PF03009 Glycerophosphoryl diester phosphodiesterase family M479_3918 PF00817 impB/mucB/samB family M479_3918 PF11798 IMS family HHH motif M479_3918 PF11799 impB/mucB/samB family C-terminal domain M479_3919 PF07687 Peptidase dimerisation domain M479_3919 PF01546 Peptidase family M20/M25/M40 M479_392 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) M479_3923 PF00156 Phosphoribosyl transferase domain M479_3925 PF07417 Sigma factor-binding transcriptional regulator Crl M479_3926 PF01472 PUA domain M479_3926 PF00696 Amino acid kinase family M479_3927 PF00171 Aldehyde dehydrogenase family M479_3928 PF07238 PilZ domain M479_3928 PF07317 Flagellar regulator YcgR M479_393 PF02224 Cytidylate kinase M479_3930 PF08241 Methyltransferase domain M479_3932 PF01202 Shikimate kinase M479_3933 PF06865 Pyrimidine/purine nucleoside phosphorylase M479_3934 PF04381 Putative exonuclease, RdgC M479_3935 PF00480 ROK family M479_3936 PF13476 AAA domain M479_3937 PF12320 Type 5 capsule protein repressor C-terminal domain M479_3937 PF00149 Calcineurin-like phosphoesterase M479_3938 PF00072 Response regulator receiver domain M479_3938 PF00486 Transcriptional regulatory protein, C terminal M479_3939 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M479_3939 PF00989 PAS fold M479_3939 PF00512 His Kinase A (phospho-acceptor) domain M479_3939 PF11808 Phosphate regulon sensor protein PhoR M479_394 PF00575 S1 RNA binding domain M479_3940 PF12849 PBP superfamily domain M479_3941 PF05525 Branched-chain amino acid transport protein M479_3942 PF00324 Amino acid permease M479_3943 PF02903 Alpha amylase, N-terminal ig-like domain M479_3943 PF00128 Alpha amylase, catalytic domain M479_3947 PF00578 AhpC/TSA family M479_3947 PF10417 C-terminal domain of 1-Cys peroxiredoxin M479_3948 PF04336 Acyl carrier protein phosphodiesterase M479_3949 PF02547 Queuosine biosynthesis protein M479_3950 PF01702 Queuine tRNA-ribosyltransferase M479_3951 PF02699 Preprotein translocase subunit M479_3952 PF02355 Protein export membrane protein M479_3952 PF07549 SecD/SecF GG Motif M479_3952 PF13721 SecD export protein N-terminal TM region M479_3953 PF02355 Protein export membrane protein M479_3953 PF07549 SecD/SecF GG Motif M479_3957 PF03477 ATP cone domain M479_3958 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region M479_3958 PF01872 RibD C-terminal domain M479_3959 PF00885 6,7-dimethyl-8-ribityllumazine synthase M479_396 PF00216 Bacterial DNA-binding protein M479_3960 PF01029 NusB family M479_3961 PF00586 AIR synthase related protein, N-terminal domain M479_3961 PF02769 AIR synthase related protein, C-terminal domain M479_3962 PF04608 Phosphatidylglycerophosphatase A M479_3964 PF02780 Transketolase, C-terminal domain M479_3964 PF13292 1-deoxy-D-xylulose-5-phosphate synthase M479_3964 PF02779 Transketolase, pyrimidine binding domain M479_3965 PF00348 Polyprenyl synthetase M479_3966 PF02609 Exonuclease VII small subunit M479_3967 PF02926 THUMP domain M479_3967 PF02568 Thiamine biosynthesis protein (ThiI) M479_3968 PF01965 DJ-1/PfpI family M479_3969 PF08546 Ketopantoate reductase PanE/ApbA C terminal M479_3969 PF02558 Ketopantoate reductase PanE/ApbA M479_397 PF00753 Metallo-beta-lactamase superfamily M479_397 PF03772 Competence protein M479_3970 PF04461 Protein of unknown function (DUF520) M479_3971 PF07690 Major Facilitator Superfamily M479_3972 PF01040 UbiA prenyltransferase family M479_3973 PF03626 Prokaryotic Cytochrome C oxidase subunit IV M479_3974 PF00510 Cytochrome c oxidase subunit III M479_3975 PF00115 Cytochrome C and Quinol oxidase polypeptide I M479_3976 PF00116 Cytochrome C oxidase subunit II, periplasmic domain M479_3976 PF06481 COX Aromatic Rich Motif M479_3977 PF03502 Nucleoside-specific channel-forming protein, Tsx M479_3978 PF07690 Major Facilitator Superfamily M479_3979 PF08139 Prokaryotic membrane lipoprotein lipid attachment site M479_3979 PF03923 Uncharacterized lipoprotein M479_398 PF00664 ABC transporter transmembrane region M479_398 PF00005 ABC transporter M479_3980 PF01722 BolA-like protein M479_3982 PF05697 Bacterial trigger factor protein (TF) M479_3982 PF05698 Bacterial trigger factor protein (TF) C-terminus M479_3982 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase M479_3983 PF00574 Clp protease M479_3984 PF06689 ClpX C4-type zinc finger M479_3984 PF07724 AAA domain (Cdc48 subfamily) M479_3984 PF10431 C-terminal, D2-small domain, of ClpB protein M479_3985 PF05362 Lon protease (S16) C-terminal proteolytic domain M479_3985 PF00004 ATPase family associated with various cellular activities (AAA) M479_3985 PF02190 ATP-dependent protease La (LON) substrate-binding domain M479_3986 PF00216 Bacterial DNA-binding protein M479_3988 PF01797 Transposase IS200 like M479_3989 PF13145 PPIC-type PPIASE domain M479_399 PF02606 Tetraacyldisaccharide-1-P 4'-kinase M479_3992 PF06508 Queuosine biosynthesis protein QueC M479_3993 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle M479_3993 PF12793 Sugar transport-related sRNA regulator N-term M479_3995 PF00291 Pyridoxal-phosphate dependent enzyme M479_3996 PF13404 AsnC-type helix-turn-helix domain M479_3996 PF01037 Lrp/AsnC ligand binding domain M479_3997 PF00005 ABC transporter M479_3997 PF00664 ABC transporter transmembrane region M479_3998 PF00005 ABC transporter M479_3998 PF00664 ABC transporter transmembrane region M479_3999 PF00543 Nitrogen regulatory protein P-II M479_40 PF14840 Processivity clamp loader gamma complex DNA pol III C-term M479_40 PF06144 DNA polymerase III, delta subunit M479_400 PF07063 Domain of unknown function (DUF1338) M479_4000 PF00909 Ammonium Transporter Family M479_4002 PF09619 Type III secretion system lipoprotein chaperone (YscW) M479_4003 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain M479_4004 PF05321 Haemolysin expression modulating protein M479_4005 PF10757 Biofilm formation regulator YbaJ M479_4007 PF00444 Ribosomal protein L36 M479_4008 PF01197 Ribosomal protein L31 M479_4009 PF00873 AcrB/AcrD/AcrF family M479_401 PF00313 'Cold-shock' DNA-binding domain M479_4010 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion M479_4010 PF00529 HlyD membrane-fusion protein of T1SS M479_4011 PF08361 MAATS-type transcriptional repressor, C-terminal region M479_4011 PF00440 Bacterial regulatory proteins, tetR family M479_4012 PF02635 DsrE/DsrF-like family M479_4013 PF00924 Mechanosensitive ion channel M479_4013 PF12795 Mechanosensitive ion channel porin domain M479_4013 PF12794 Mechanosensitive ion channel inner membrane domain 1 M479_4015 PF04304 Protein of unknown function (DUF454) M479_4016 PF00156 Phosphoribosyl transferase domain M479_4017 PF12169 DNA polymerase III subunits gamma and tau domain III M479_4017 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding M479_4017 PF12170 DNA polymerase III tau subunit V interacting with alpha M479_4018 PF02575 YbaB/EbfC DNA-binding family M479_4019 PF02132 RecR protein M479_4019 PF13662 Toprim domain M479_402 PF03966 Trm112p-like protein M479_4020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M479_4020 PF00183 Hsp90 protein M479_4021 PF05191 Adenylate kinase, active site lid M479_4022 PF00762 Ferrochelatase M479_4023 PF00970 Oxidoreductase FAD-binding domain M479_4023 PF00111 2Fe-2S iron-sulfur cluster binding domain M479_4023 PF00175 Oxidoreductase NAD-binding domain M479_4024 PF00483 Nucleotidyl transferase M479_4025 PF16363 GDP-mannose 4,6 dehydratase M479_4026 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family M479_4027 PF01370 NAD dependent epimerase/dehydratase family M479_403 PF02348 Cytidylyltransferase M479_4034 PF00534 Glycosyl transferases group 1 M479_4034 PF13439 Glycosyltransferase Family 4 M479_4035 PF16363 GDP-mannose 4,6 dehydratase M479_4036 PF16363 GDP-mannose 4,6 dehydratase M479_4037 PF01370 NAD dependent epimerase/dehydratase family M479_4038 PF01050 Mannose-6-phosphate isomerase M479_4038 PF00483 Nucleotidyl transferase M479_4039 PF00535 Glycosyl transferase family 2 M479_404 PF01636 Phosphotransferase enzyme family M479_4040 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain M479_4040 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II M479_4040 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III M479_4040 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I M479_4041 PF02706 Chain length determinant protein M479_4042 PF00294 pfkB family carbohydrate kinase M479_4043 PF00999 Sodium/hydrogen exchanger family M479_4043 PF02254 TrkA-N domain M479_4044 PF07690 Major Facilitator Superfamily M479_4045 PF07690 Major Facilitator Superfamily M479_4046 PF02872 5'-nucleotidase, C-terminal domain M479_4046 PF00149 Calcineurin-like phosphoesterase M479_4047 PF02872 5'-nucleotidase, C-terminal domain M479_4047 PF00149 Calcineurin-like phosphoesterase M479_4048 PF02872 5'-nucleotidase, C-terminal domain M479_4048 PF00149 Calcineurin-like phosphoesterase M479_4051 PF04073 Aminoacyl-tRNA editing domain M479_4052 PF01963 TraB family M479_4053 PF00403 Heavy-metal-associated domain M479_4054 PF13411 MerR HTH family regulatory protein M479_4055 PF01957 NfeD-like C-terminal, partner-binding M479_4056 PF16200 C-terminal region of band_7 M479_4056 PF01145 SPFH domain / Band 7 family M479_4057 PF00085 Thioredoxin M479_4058 PF00106 short chain dehydrogenase M479_4059 PF13472 GDSL-like Lipase/Acylhydrolase family M479_406 PF17192 MukF middle domain M479_406 PF03882 MukF winged-helix domain M479_406 PF17193 MukF C-terminal domain M479_4060 PF00005 ABC transporter M479_4062 PF02222 ATP-grasp domain M479_4062 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain M479_4063 PF00731 AIR carboxylase M479_4064 PF00149 Calcineurin-like phosphoesterase M479_4065 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD M479_4066 PF09190 DALR domain M479_4066 PF01406 tRNA synthetases class I (C) catalytic domain M479_4068 PF01797 Transposase IS200 like M479_407 PF04288 MukE-like family M479_4070 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain M479_4070 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain M479_4076 PF01066 CDP-alcohol phosphatidyltransferase M479_4078 PF01553 Acyltransferase M479_4079 PF12146 Serine aminopeptidase, S33 M479_4079 PF12147 Putative methyltransferase M479_408 PF04310 MukB N-terminal M479_408 PF16330 MukB hinge domain M479_4080 PF00782 Dual specificity phosphatase, catalytic domain M479_4083 PF01695 IstB-like ATP binding protein M479_4087 PF00665 Integrase core domain M479_4087 PF02796 Helix-turn-helix domain of resolvase M479_4088 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M479_4088 PF03466 LysR substrate binding domain M479_4089 PF00248 Aldo/keto reductase family M479_4090 PF00248 Aldo/keto reductase family M479_4095 PF00872 Transposase, Mutator family M479_4096 PF08007 Cupin superfamily protein M479_4098 PF13018 Extended Signal Peptide of Type V secretion system M479_4098 PF03797 Autotransporter beta-domain M479_4098 PF03212 Pertactin M479_4098 PF16168 Adhesin of bacterial autotransporter system, probable stalk M479_41 PF04390 Lipopolysaccharide-assembly M479_410 PF03734 L,D-transpeptidase catalytic domain M479_410 PF01471 Putative peptidoglycan binding domain M479_4101 PF05638 Type VI secretion system effector, Hcp M479_4106 PF03335 Phage tail fibre repeat M479_4106 PF08400 Prophage tail fibre N-terminal M479_4106 PF03335 Phage tail fibre repeat M479_4106 PF07484 Phage Tail Collar Domain M479_4106 PF07484 Phage Tail Collar Domain M479_4106 PF08400 Prophage tail fibre N-terminal M479_4107 PF02413 Caudovirales tail fibre assembly protein, lambda gpK M479_4108 PF01695 IstB-like ATP binding protein M479_4109 PF02796 Helix-turn-helix domain of resolvase M479_4109 PF00665 Integrase core domain M479_411 PF05951 Bacterial protein of unknown function (DUF882) M479_4110 PF02195 ParB-like nuclease domain M479_4111 PF06006 Bacterial protein of unknown function (DUF905) M479_4114 PF07128 Protein of unknown function (DUF1380) M479_4116 PF01555 DNA methylase M479_4119 PF02195 ParB-like nuclease domain M479_4119 PF08775 ParB family M479_412 PF00753 Metallo-beta-lactamase superfamily M479_4120 PF13614 AAA domain M479_4120 PF18607 ParA helix turn helix domain M479_4123 PF00239 Resolvase, N terminal domain M479_4123 PF02796 Helix-turn-helix domain of resolvase M479_4124 PF04754 Putative transposase, YhgA-like M479_4126 PF13091 PLD-like domain M479_4128 PF01548 Transposase M479_4128 PF02371 Transposase IS116/IS110/IS902 family M479_413 PF00155 Aminotransferase class I and II M479_4130 PF02387 IncFII RepA protein family M479_4132 PF06965 Na+/H+ antiporter 1 M479_4132 PF13462 Thioredoxin M479_4134 PF05857 TraX protein M479_4135 PF18340 DNA relaxase TraI 2B/2B-like domain M479_4135 PF07057 DNA helicase TraI M479_4135 PF18272 single-stranded DNA binding TraI N-terminal subdomain M479_4135 PF08751 TrwC relaxase M479_4136 PF12615 F sex factor protein N terminal M479_4136 PF10412 Type IV secretion-system coupling protein DNA-binding domain M479_4137 PF00872 Transposase, Mutator family M479_4138 PF05513 TraA M479_4139 PF07178 TraL protein M479_414 PF00267 Gram-negative porin M479_4140 PF05309 TraE protein M479_4141 PF06586 TraK protein M479_4142 PF03743 Bacterial conjugation TrbI-like protein M479_4143 PF09676 Type IV conjugative transfer system lipoprotein (TraV) M479_4148 PF11130 F pilus assembly Type-IV secretion system for plasmid transfer M479_4149 PF09677 Type-F conjugative transfer system protein (TrbI_Ftype) M479_415 PF01336 OB-fold nucleic acid binding domain M479_415 PF00152 tRNA synthetases class II (D, K and N) M479_4150 PF12477 Sex factor F TraW protein N terminal M479_4151 PF06834 TraU protein M479_4152 PF09673 Type-F conjugative transfer system pilin assembly protein M479_4153 PF06986 Type-1V conjugative transfer system mating pair stabilisation M479_4155 PF13728 F plasmid transfer operon protein M479_4156 PF09679 Type-F conjugative transfer system pilin chaperone (TraQ) M479_4157 PF13728 F plasmid transfer operon protein M479_4158 PF06122 Conjugative relaxosome accessory transposon protein M479_4159 PF07916 TraG-like protein, N-terminal region M479_416 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family M479_416 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain M479_4160 PF00872 Transposase, Mutator family M479_4169 PF06445 GyrI-like small molecule binding domain M479_4169 PF12833 Helix-turn-helix domain M479_417 PF11940 Domain of unknown function (DUF3458) Ig-like fold M479_417 PF01433 Peptidase family M1 domain M479_417 PF17432 Domain of unknown function (DUF3458_C) ARM repeats M479_4170 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain M479_4170 PF02753 Pili assembly chaperone PapD, C-terminal domain M479_4171 PF13953 PapC C-terminal domain M479_4171 PF13954 PapC N-terminal domain M479_4171 PF00577 Outer membrane usher protein M479_4172 PF09255 Caf1 Capsule antigen M479_4176 PF11775 Cobalamin biosynthesis protein CobT VWA domain M479_4176 PF06213 Cobalamin biosynthesis protein CobT M479_4178 PF02811 PHP domain M479_4178 PF17657 Bacterial DNA polymerase III alpha subunit finger domain M479_4178 PF14579 Helix-hairpin-helix motif M479_4178 PF07733 Bacterial DNA polymerase III alpha NTPase domain M479_418 PF01180 Dihydroorotate dehydrogenase M479_4184 PF01367 5'-3' exonuclease, C-terminal SAM fold M479_4184 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain M479_4186 PF00154 recA bacterial DNA recombination protein M479_419 PF07126 Cell-division protein ZapC M479_4195 PF01051 Initiator Replication protein M479_42 PF13603 Leucyl-tRNA synthetase, Domain 2 M479_42 PF00133 tRNA synthetases class I (I, L, M and V) M479_42 PF08264 Anticodon-binding domain of tRNA M479_420 PF00111 2Fe-2S iron-sulfur cluster binding domain M479_420 PF03476 MOSC N-terminal beta barrel domain M479_420 PF03473 MOSC domain M479_4203 PF03477 ATP cone domain M479_4203 PF00317 Ribonucleotide reductase, all-alpha domain M479_4203 PF02867 Ribonucleotide reductase, barrel domain M479_4204 PF00268 Ribonucleotide reductase, small chain M479_4206 PF01797 Transposase IS200 like M479_421 PF10672 S-adenosylmethionine-dependent methyltransferase M479_421 PF01170 Putative RNA methylase family UPF0020 M479_421 PF02926 THUMP domain M479_4216 PF17191 RecG wedge domain M479_4216 PF00271 Helicase conserved C-terminal domain M479_4216 PF00270 DEAD/DEAH box helicase M479_4217 PF17762 HTH domain found in ParB protein M479_4217 PF02195 ParB-like nuclease domain M479_4218 PF17762 HTH domain found in ParB protein M479_4218 PF02195 ParB-like nuclease domain M479_4219 PF00664 ABC transporter transmembrane region M479_4219 PF03412 Peptidase C39 family M479_4219 PF00005 ABC transporter M479_422 PF00005 ABC transporter M479_422 PF16326 ABC transporter C-terminal domain M479_422 PF12848 ABC transporter M479_423 PF04403 Paraquat-inducible protein A M479_424 PF02470 MlaD protein M479_4243 PF16697 Inner membrane component of T3SS, cytoplasmic domain M479_4243 PF16693 Inner membrane component of T3SS, periplasmic domain M479_4244 PF08988 Type III secretion system, cytoplasmic E component of needle M479_4245 PF09392 Type III secretion needle MxiH, YscF, SsaG, EprI, PscF, EscF M479_4246 PF09477 Bacterial type II secretion system chaperone protein (type_III_yscG) M479_4247 PF09025 YopR, type III needle-polymerisation regulator M479_4248 PF17001 Type III secretion basal body protein I, YscI, HrpB, PscI M479_4249 PF01514 Secretory protein of YscJ/FliF family M479_425 PF03886 ABC-type transport auxiliary lipoprotein component M479_4250 PF06578 YOP proteins translocation protein K (YscK) M479_4251 PF02108 Flagellar assembly protein FliH M479_4252 PF09013 YopH, N-terminal M479_4253 PF01527 Transposase M479_4255 PF00665 Integrase core domain M479_4255 PF02796 Helix-turn-helix domain of resolvase M479_4256 PF01695 IstB-like ATP binding protein M479_4257 PF13276 HTH-like domain M479_4257 PF13683 Integrase core domain M479_4259 PF09013 YopH, N-terminal M479_4259 PF00102 Protein-tyrosine phosphatase M479_426 PF01797 Transposase IS200 like M479_4260 PF13683 Integrase core domain M479_4260 PF13276 HTH-like domain M479_4262 PF00069 Protein kinase domain M479_4262 PF09632 Rac1-binding domain M479_4269 PF02387 IncFII RepA protein family M479_427 PF12838 4Fe-4S dicluster domain M479_4270 PF10723 Replication regulatory protein RepB M479_4276 PF05658 Head domain of trimeric autotransporter adhesin M479_4276 PF03895 YadA-like membrane anchor domain M479_4276 PF05662 Coiled stalk of trimeric autotransporter adhesin M479_4278 PF03895 YadA-like membrane anchor domain M479_4278 PF05662 Coiled stalk of trimeric autotransporter adhesin M479_4278 PF05658 Head domain of trimeric autotransporter adhesin M479_4279 PF01526 Tn3 transposase DDE domain M479_4279 PF13700 Domain of unknown function (DUF4158) M479_428 PF01418 Helix-turn-helix domain, rpiR family M479_428 PF01380 SIS domain M479_4281 PF00239 Resolvase, N terminal domain M479_4281 PF02796 Helix-turn-helix domain of resolvase M479_4284 PF01527 Transposase M479_4285 PF13683 Integrase core domain M479_4285 PF13276 HTH-like domain M479_4287 PF01695 IstB-like ATP binding protein M479_4288 PF00665 Integrase core domain M479_4289 PF13276 HTH-like domain M479_4289 PF13683 Integrase core domain M479_429 PF01380 SIS domain M479_4290 PF05932 Tir chaperone protein (CesT) family M479_4291 PF03545 Yersinia virulence determinant (YopE) M479_4291 PF09020 YopE, N terminal M479_4293 PF03693 Bacterial antitoxin of ParD toxin-antitoxin type II system and RHH M479_4295 PF18090 Centromere-binding protein HTH domain M479_4295 PF02195 ParB-like nuclease domain M479_4296 PF13614 AAA domain M479_4298 PF13333 Integrase core domain M479_4298 PF00665 Integrase core domain M479_4298 PF13276 HTH-like domain M479_43 PF07295 Zinc-ribbon containing domain M479_4300 PF05818 Enterobacterial TraT complement resistance protein M479_4302 PF03543 Yersinia/Haemophilus virulence surface antigen M479_4303 PF05932 Tir chaperone protein (CesT) family M479_4307 PF12468 Type III secretion system leucine rich repeat protein M479_4309 PF00872 Transposase, Mutator family M479_431 PF14437 MafB19-like deaminase M479_4310 PF00872 Transposase, Mutator family M479_4311 PF05844 YopD protein M479_4312 PF04888 Secretion system effector C (SseC) like family M479_4313 PF07720 Tetratricopeptide repeat M479_4314 PF04792 V antigen (LcrV) protein M479_4315 PF07216 LcrG protein M479_4316 PF09621 Type III secretion system regulator (LcrR) M479_4317 PF00771 FHIPEP family M479_4319 PF09474 Type III secretion system YscX (type_III_YscX) M479_432 PF01464 Transglycosylase SLT domain M479_432 PF00497 Bacterial extracellular solute-binding proteins, family 3 M479_4321 PF09059 TyeA M479_4322 PF07201 HrpJ-like domain M479_4323 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain M479_4323 PF02874 ATP synthase alpha/beta family, beta-barrel domain M479_4323 PF18269 T3SS EscN ATPase C-terminal domain M479_4324 PF07321 Type III secretion protein YscO M479_4325 PF02120 Flagellar hook-length control protein FliK M479_4326 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term M479_4327 PF00813 FliP family M479_4328 PF01313 Bacterial export proteins, family 3 M479_4329 PF01311 Bacterial export proteins, family 1 M479_433 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal M479_433 PF02769 AIR synthase related protein, C-terminal domain M479_433 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain M479_4330 PF01312 FlhB HrpN YscU SpaS Family M479_4332 PF02311 AraC-like ligand binding domain M479_4332 PF12833 Helix-turn-helix domain M479_4333 PF05932 Tir chaperone protein (CesT) family M479_438 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M479_438 PF00512 His Kinase A (phospho-acceptor) domain M479_439 PF13942 YfhG lipoprotein M479_44 PF00005 ABC transporter M479_440 PF00158 Sigma-54 interaction domain M479_440 PF00072 Response regulator receiver domain M479_441 PF02540 NAD synthase M479_441 PF00795 Carbon-nitrogen hydrolase M479_442 PF00543 Nitrogen regulatory protein P-II M479_443 PF14503 YhfZ C-terminal domain M479_443 PF14502 Helix-turn-helix domain M479_444 PF01695 IstB-like ATP binding protein M479_445 PF00665 Integrase core domain M479_445 PF02796 Helix-turn-helix domain of resolvase M479_446 PF00175 Oxidoreductase NAD-binding domain M479_446 PF00042 Globin M479_446 PF00970 Oxidoreductase FAD-binding domain M479_447 PF00464 Serine hydroxymethyltransferase M479_448 PF13505 Outer membrane protein beta-barrel domain M479_449 PF00874 PRD domain M479_45 PF00528 Binding-protein-dependent transport system inner membrane component M479_450 PF12832 MFS_1 like family M479_451 PF06226 Protein of unknown function (DUF1007) M479_452 PF03824 High-affinity nickel-transport protein M479_453 PF00459 Inositol monophosphatase family M479_454 PF00588 SpoU rRNA Methylase family M479_455 PF02082 Transcriptional regulator M479_456 PF00266 Aminotransferase class-V M479_457 PF01592 NifU-like N terminal domain M479_458 PF01521 Iron-sulphur cluster biosynthesis M479_459 PF00226 DnaJ domain M479_459 PF07743 HSCB C-terminal oligomerisation domain M479_46 PF00528 Binding-protein-dependent transport system inner membrane component M479_460 PF00012 Hsp70 protein M479_461 PF00111 2Fe-2S iron-sulfur cluster binding domain M479_462 PF04384 Iron-sulphur cluster assembly M479_463 PF00883 Cytosol aminopeptidase family, catalytic domain M479_463 PF12404 Peptidase M479_464 PF07179 SseB protein N-terminal domain M479_464 PF14581 SseB protein C-terminal domain M479_466 PF16168 Adhesin of bacterial autotransporter system, probable stalk M479_466 PF03797 Autotransporter beta-domain M479_466 PF03212 Pertactin M479_467 PF16168 Adhesin of bacterial autotransporter system, probable stalk M479_467 PF03797 Autotransporter beta-domain M479_467 PF03212 Pertactin M479_469 PF00334 Nucleoside diphosphate kinase M479_47 PF00497 Bacterial extracellular solute-binding proteins, family 3 M479_470 PF04055 Radical SAM superfamily M479_472 PF13464 Domain of unknown function (DUF4115) M479_473 PF04551 GcpE protein M479_474 PF03129 Anticodon binding domain M479_474 PF13393 Histidyl-tRNA synthetase M479_475 PF09976 Tetratricopeptide repeat-like domain M479_476 PF13360 PQQ-like domain M479_477 PF01926 50S ribosome-binding GTPase M479_477 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal M479_479 PF07191 zinc-ribbons M479_48 PF00795 Carbon-nitrogen hydrolase M479_480 PF02601 Exonuclease VII, large subunit M479_480 PF13742 OB-fold nucleic acid binding domain M479_481 PF00571 CBS domain M479_481 PF00478 IMP dehydrogenase / GMP reductase domain M479_482 PF00117 Glutamine amidotransferase class-I M479_482 PF02540 NAD synthase M479_482 PF00958 GMP synthase C terminal domain M479_483 PF01797 Transposase IS200 like M479_484 PF05638 Type VI secretion system effector, Hcp M479_49 PF03471 Transporter associated domain M479_49 PF00571 CBS domain M479_490 PF00872 Transposase, Mutator family M479_493 PF08543 Phosphomethylpyrimidine kinase M479_496 PF00781 Diacylglycerol kinase catalytic domain M479_498 PF07411 Domain of unknown function (DUF1508) M479_499 PF00072 Response regulator receiver domain M479_499 PF00486 Transcriptional regulatory protein, C terminal M479_50 PF02130 Uncharacterized protein family UPF0054 M479_500 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M479_500 PF00512 His Kinase A (phospho-acceptor) domain M479_500 PF00672 HAMP domain M479_501 PF07690 Major Facilitator Superfamily M479_502 PF00873 AcrB/AcrD/AcrF family M479_503 PF00873 AcrB/AcrD/AcrF family M479_504 PF00873 AcrB/AcrD/AcrF family M479_505 PF13533 Biotin-lipoyl like M479_506 PF00005 ABC transporter M479_506 PF08402 TOBE domain M479_507 PF00155 Aminotransferase class I and II M479_507 PF00392 Bacterial regulatory proteins, gntR family M479_508 PF00202 Aminotransferase class-III M479_51 PF02562 PhoH-like protein M479_510 PF00528 Binding-protein-dependent transport system inner membrane component M479_511 PF00528 Binding-protein-dependent transport system inner membrane component M479_512 PF00012 Hsp70 protein M479_513 PF03448 MgtE intracellular N domain M479_513 PF01769 Divalent cation transporter M479_513 PF00571 CBS domain M479_514 PF02541 Ppx/GppA phosphatase family M479_515 PF02503 Polyphosphate kinase middle domain M479_515 PF13090 Polyphosphate kinase C-terminal domain 2 M479_515 PF17941 Polyphosphate kinase C-terminal domain 1 M479_515 PF13089 Polyphosphate kinase N-terminal domain M479_516 PF00528 Binding-protein-dependent transport system inner membrane component M479_517 PF00528 Binding-protein-dependent transport system inner membrane component M479_518 PF00005 ABC transporter M479_52 PF00919 Uncharacterized protein family UPF0004 M479_52 PF04055 Radical SAM superfamily M479_52 PF01938 TRAM domain M479_521 PF13302 Acetyltransferase (GNAT) domain M479_522 PF00551 Formyl transferase M479_523 PF00586 AIR synthase related protein, N-terminal domain M479_523 PF02769 AIR synthase related protein, C-terminal domain M479_525 PF01797 Transposase IS200 like M479_526 PF00308 Bacterial dnaA protein M479_527 PF03960 ArsC family M479_528 PF07720 Tetratricopeptide repeat M479_528 PF01435 Peptidase family M48 M479_529 PF01594 AI-2E family transporter M479_53 PF01494 FAD binding domain M479_532 PF00578 AhpC/TSA family M479_533 PF01842 ACT domain M479_534 PF00701 Dihydrodipicolinate synthetase family M479_535 PF06804 NlpB/DapX lipoprotein M479_536 PF01797 Transposase IS200 like M479_537 PF01259 SAICAR synthetase M479_538 PF04228 Putative neutral zinc metallopeptidase M479_539 PF04284 Protein of unknown function (DUF441) M479_540 PF17176 tRNA-binding domain M479_540 PF05127 Helicase M479_540 PF13718 GNAT acetyltransferase 2 M479_540 PF08351 Domain of unknown function (DUF1726) M479_541 PF13980 Uncharacterised protein family (UPF0370) M479_542 PF02557 D-alanyl-D-alanine carboxypeptidase M479_543 PF01546 Peptidase family M20/M25/M40 M479_543 PF07687 Peptidase dimerisation domain M479_544 PF03960 ArsC family M479_547 PF00528 Binding-protein-dependent transport system inner membrane component M479_548 PF00005 ABC transporter M479_548 PF08402 TOBE domain M479_549 PF00884 Sulfatase M479_550 PF04055 Radical SAM superfamily M479_550 PF13186 Iron-sulfur cluster-binding domain M479_551 PF04307 LexA-binding, inner membrane-associated putative hydrolase M479_553 PF00873 AcrB/AcrD/AcrF family M479_555 PF00196 Bacterial regulatory proteins, luxR family M479_555 PF00072 Response regulator receiver domain M479_556 PF00037 4Fe-4S binding domain M479_556 PF12800 4Fe-4S binding domain M479_556 PF13187 4Fe-4S dicluster domain M479_557 PF03927 NapD protein M479_558 PF01568 Molydopterin dinucleotide binding domain M479_558 PF04879 Molybdopterin oxidoreductase Fe4S4 domain M479_558 PF00384 Molybdopterin oxidoreductase M479_558 PF10518 TAT (twin-arginine translocation) pathway signal sequence M479_559 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) M479_560 PF03264 NapC/NirT cytochrome c family, N-terminal region M479_561 PF00293 NUDIX domain M479_562 PF00390 Malic enzyme, N-terminal domain M479_562 PF01515 Phosphate acetyl/butaryl transferase M479_562 PF03949 Malic enzyme, NAD binding domain M479_563 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 M479_564 PF01218 Coproporphyrinogen III oxidase M479_565 PF00583 Acetyltransferase (GNAT) family M479_568 PF03212 Pertactin M479_568 PF16168 Adhesin of bacterial autotransporter system, probable stalk M479_568 PF13018 Extended Signal Peptide of Type V secretion system M479_568 PF03797 Autotransporter beta-domain M479_569 PF04076 Bacterial OB fold (BOF) protein M479_571 PF06572 Protein of unknown function (DUF1131) M479_572 PF04261 Dyp-type peroxidase family M479_573 PF00701 Dihydrodipicolinate synthetase family M479_574 PF04131 Putative N-acetylmannosamine-6-phosphate epimerase M479_575 PF12468 Type III secretion system leucine rich repeat protein M479_576 PF00480 ROK family M479_577 PF04074 YhcH/YjgK/YiaL M479_578 PF01418 Helix-turn-helix domain, rpiR family M479_578 PF01380 SIS domain M479_579 PF07690 Major Facilitator Superfamily M479_581 PF00528 Binding-protein-dependent transport system inner membrane component M479_582 PF00528 Binding-protein-dependent transport system inner membrane component M479_583 PF00005 ABC transporter M479_584 PF00291 Pyridoxal-phosphate dependent enzyme M479_586 PF00072 Response regulator receiver domain M479_586 PF00486 Transcriptional regulatory protein, C terminal M479_587 PF00672 HAMP domain M479_587 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M479_587 PF00512 His Kinase A (phospho-acceptor) domain M479_589 PF00155 Aminotransferase class I and II M479_591 PF00557 Metallopeptidase family M24 M479_591 PF05195 Aminopeptidase P, N-terminal domain M479_593 PF00474 Sodium:solute symporter family M479_594 PF07992 Pyridine nucleotide-disulphide oxidoreductase M479_594 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain M479_595 PF12704 MacB-like periplasmic core domain M479_595 PF02687 FtsX-like permease family M479_595 PF00005 ABC transporter M479_596 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion M479_597 PF00072 Response regulator receiver domain M479_597 PF00486 Transcriptional regulatory protein, C terminal M479_598 PF00512 His Kinase A (phospho-acceptor) domain M479_598 PF16527 Two-component sensor protein CpxA, periplasmic domain M479_598 PF00672 HAMP domain M479_598 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M479_60 PF13537 Glutamine amidotransferase domain M479_60 PF00733 Asparagine synthase M479_601 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 M479_602 PF02896 PEP-utilising enzyme, TIM barrel domain M479_602 PF05524 PEP-utilising enzyme, N-terminal M479_602 PF00391 PEP-utilising enzyme, mobile domain M479_603 PF00381 PTS HPr component phosphorylation site M479_604 PF00291 Pyridoxal-phosphate dependent enzyme M479_606 PF04354 ZipA, C-terminal FtsZ-binding domain M479_607 PF12826 Helix-hairpin-helix motif M479_607 PF03119 NAD-dependent DNA ligase C4 zinc finger domain M479_607 PF03120 NAD-dependent DNA ligase OB-fold domain M479_607 PF01653 NAD-dependent DNA ligase adenylation domain M479_607 PF00533 BRCA1 C Terminus (BRCT) domain M479_608 PF12843 Putative quorum-sensing-regulated virulence factor M479_61 PF13344 Haloacid dehalogenase-like hydrolase M479_611 PF01797 Transposase IS200 like M479_613 PF00749 tRNA synthetases class I (E and Q), catalytic domain M479_618 PF07662 Na+ dependent nucleoside transporter C-terminus M479_618 PF01773 Na+ dependent nucleoside transporter N-terminus M479_618 PF07670 Nucleoside recognition M479_619 PF01566 Natural resistance-associated macrophage protein M479_62 PF00480 ROK family M479_62 PF01047 MarR family M479_621 PF00248 Aldo/keto reductase family M479_622 PF03466 LysR substrate binding domain M479_622 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M479_624 PF02685 Glucokinase M479_625 PF07350 Protein of unknown function (DUF1479) M479_626 PF00155 Aminotransferase class I and II M479_627 PF01292 Prokaryotic cytochrome b561 M479_629 PF03783 Curli production assembly/transport component CsgG M479_63 PF01979 Amidohydrolase family M479_631 PF05643 Putative bacterial lipoprotein (DUF799) M479_633 PF02613 Nitrate reductase delta subunit M479_634 PF04976 DMSO reductase anchor subunit (DmsC) M479_635 PF13247 4Fe-4S dicluster domain M479_635 PF12800 4Fe-4S binding domain M479_636 PF04879 Molybdopterin oxidoreductase Fe4S4 domain M479_636 PF00384 Molybdopterin oxidoreductase M479_636 PF01568 Molydopterin dinucleotide binding domain M479_638 PF05638 Type VI secretion system effector, Hcp M479_64 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase M479_640 PF00005 ABC transporter M479_641 PF00528 Binding-protein-dependent transport system inner membrane component M479_643 PF13406 Transglycosylase SLT domain M479_65 PF02378 Phosphotransferase system, EIIC M479_65 PF00367 phosphotransferase system, EIIB M479_65 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 M479_653 PF17871 AAA lid domain M479_653 PF10431 C-terminal, D2-small domain, of ClpB protein M479_653 PF00004 ATPase family associated with various cellular activities (AAA) M479_653 PF07724 AAA domain (Cdc48 subfamily) M479_654 PF16970 Type-1 fimbrial protein, A M479_655 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain M479_655 PF02753 Pili assembly chaperone PapD, C-terminal domain M479_656 PF00577 Outer membrane usher protein M479_656 PF13953 PapC C-terminal domain M479_656 PF13954 PapC N-terminal domain M479_657 PF00872 Transposase, Mutator family M479_658 PF13953 PapC C-terminal domain M479_658 PF13954 PapC N-terminal domain M479_658 PF00577 Outer membrane usher protein M479_66 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain M479_66 PF00749 tRNA synthetases class I (E and Q), catalytic domain M479_666 PF02796 Helix-turn-helix domain of resolvase M479_666 PF00665 Integrase core domain M479_667 PF01695 IstB-like ATP binding protein M479_67 PF03573 outer membrane porin, OprD family M479_671 PF04717 Type VI secretion system, phage-baseplate injector M479_677 PF03831 PhnA domain M479_677 PF08274 PhnA Zinc-Ribbon M479_679 PF04011 LemA family M479_68 PF00728 Glycosyl hydrolase family 20, catalytic domain M479_68 PF03174 Chitobiase/beta-hexosaminidase C-terminal domain M479_68 PF02838 Glycosyl hydrolase family 20, domain 2 M479_68 PF03173 Putative carbohydrate binding domain M479_682 PF00005 ABC transporter M479_683 PF03379 CcmB protein M479_684 PF01578 Cytochrome C assembly protein M479_685 PF04995 Heme exporter protein D (CcmD) M479_686 PF03100 CcmE M479_687 PF01578 Cytochrome C assembly protein M479_687 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal M479_688 PF08534 Redoxin M479_689 PF03918 Cytochrome C biogenesis protein M479_69 PF03173 Putative carbohydrate binding domain M479_69 PF02838 Glycosyl hydrolase family 20, domain 2 M479_69 PF03174 Chitobiase/beta-hexosaminidase C-terminal domain M479_69 PF00728 Glycosyl hydrolase family 20, catalytic domain M479_690 PF03918 Cytochrome C biogenesis protein M479_691 PF04333 MlaA lipoprotein M479_692 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) M479_693 PF04175 Protein of unknown function (DUF406) M479_694 PF02803 Thiolase, C-terminal domain M479_694 PF00108 Thiolase, N-terminal domain M479_695 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain M479_695 PF00378 Enoyl-CoA hydratase/isomerase M479_695 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain M479_696 PF00300 Histidine phosphatase superfamily (branch 1) M479_697 PF01713 Smr domain M479_698 PF05175 Methyltransferase small domain M479_699 PF01264 Chorismate synthase M479_70 PF01475 Ferric uptake regulator family M479_700 PF03411 Penicillin-insensitive murein endopeptidase M479_701 PF01925 Sulfite exporter TauE/SafE M479_702 PF04315 Elongation factor P hydroxylase M479_703 PF08891 YfcL protein M479_704 PF01266 FAD dependent oxidoreductase M479_704 PF05430 S-adenosyl-L-methionine-dependent methyltransferase M479_705 PF00109 Beta-ketoacyl synthase, N-terminal domain M479_705 PF02801 Beta-ketoacyl synthase, C-terminal domain M479_706 PF01177 Asp/Glu/Hydantoin racemase M479_707 PF00419 Fimbrial protein M479_709 PF00892 EamA-like transporter family M479_71 PF00258 Flavodoxin M479_711 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain M479_711 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain M479_711 PF11890 Domain of unknown function (DUF3410) M479_712 PF01118 Semialdehyde dehydrogenase, NAD binding domain M479_712 PF02774 Semialdehyde dehydrogenase, dimerisation domain M479_713 PF01416 tRNA pseudouridine synthase M479_714 PF09335 SNARE associated Golgi protein M479_715 PF17848 Acetyl-coA carboxylase zinc finger domain M479_715 PF01039 Carboxyl transferase domain M479_716 PF02875 Mur ligase family, glutamate ligase domain M479_716 PF08245 Mur ligase middle domain M479_717 PF05036 Sporulation related domain M479_718 PF02674 Colicin V production protein M479_719 PF00156 Phosphoribosyl transferase domain M479_72 PF01402 Ribbon-helix-helix protein, copG family M479_720 PF02441 Flavoprotein M479_721 PF00497 Bacterial extracellular solute-binding proteins, family 3 M479_722 PF00528 Binding-protein-dependent transport system inner membrane component M479_723 PF00528 Binding-protein-dependent transport system inner membrane component M479_724 PF00005 ABC transporter M479_725 PF01370 NAD dependent epimerase/dehydratase family M479_725 PF08338 Domain of unknown function (DUF1731) M479_727 PF12850 Calcineurin-like phosphoesterase superfamily domain M479_728 PF12850 Calcineurin-like phosphoesterase superfamily domain M479_729 PF00293 NUDIX domain M479_730 PF03611 PTS system sugar-specific permease component M479_732 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 M479_733 PF00356 Bacterial regulatory proteins, lacI family M479_733 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family M479_734 PF01515 Phosphate acetyl/butaryl transferase M479_734 PF07085 DRTGG domain M479_735 PF00871 Acetokinase family M479_736 PF04217 Protein of unknown function, DUF412 M479_737 PF03887 YfbU domain M479_738 PF13419 Haloacid dehalogenase-like hydrolase M479_739 PF02080 TrkA-C domain M479_739 PF03600 Citrate transporter M479_74 PF12697 Alpha/beta hydrolase family M479_741 PF00155 Aminotransferase class I and II M479_742 PF03466 LysR substrate binding domain M479_742 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M479_743 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 M479_744 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit M479_745 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit M479_745 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit M479_747 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region M479_747 PF10531 SLBB domain M479_747 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit M479_748 PF01568 Molydopterin dinucleotide binding domain M479_748 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region M479_748 PF04879 Molybdopterin oxidoreductase Fe4S4 domain M479_748 PF00384 Molybdopterin oxidoreductase M479_749 PF00146 NADH dehydrogenase M479_750 PF12838 4Fe-4S dicluster domain M479_751 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 M479_752 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L M479_753 PF00361 Proton-conducting membrane transporter M479_753 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus M479_754 PF00361 Proton-conducting membrane transporter M479_755 PF00361 Proton-conducting membrane transporter M479_757 PF04074 YhcH/YjgK/YiaL M479_758 PF01202 Shikimate kinase M479_759 PF00106 short chain dehydrogenase M479_76 PF01527 Transposase M479_761 PF00356 Bacterial regulatory proteins, lacI family M479_762 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain M479_762 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain M479_763 PF07690 Major Facilitator Superfamily M479_764 PF03928 Haem-degrading M479_765 PF00920 Dehydratase family M479_767 PF05957 Bacterial protein of unknown function (DUF883) M479_769 PF00425 chorismate binding enzyme M479_77 PF00589 Phage integrase family M479_77 PF13356 Arm DNA-binding domain M479_770 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain M479_770 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain M479_770 PF16582 Middle domain of thiamine pyrophosphate M479_771 PF12697 Alpha/beta hydrolase family M479_772 PF00378 Enoyl-CoA hydratase/isomerase M479_773 PF13378 Enolase C-terminal domain-like M479_774 PF00501 AMP-binding enzyme M479_774 PF13193 AMP-binding enzyme C-terminal domain M479_775 PF02885 Glycosyl transferase family, helical bundle domain M479_776 PF07338 Protein of unknown function (DUF1471) M479_777 PF05971 RNA methyltransferase M479_778 PF08447 PAS fold M479_778 PF13426 PAS domain M479_778 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain M479_779 PF00005 ABC transporter M479_78 PF01695 IstB-like ATP binding protein M479_780 PF00528 Binding-protein-dependent transport system inner membrane component M479_781 PF00497 Bacterial extracellular solute-binding proteins, family 3 M479_783 PF00210 Ferritin-like domain M479_784 PF13649 Methyltransferase domain M479_786 PF00892 EamA-like transporter family M479_787 PF13505 Outer membrane protein beta-barrel domain M479_79 PF02796 Helix-turn-helix domain of resolvase M479_79 PF00665 Integrase core domain M479_791 PF08240 Alcohol dehydrogenase GroES-like domain M479_791 PF00107 Zinc-binding dehydrogenase M479_792 PF13407 Periplasmic binding protein domain M479_793 PF00005 ABC transporter M479_794 PF00005 ABC transporter M479_795 PF02653 Branched-chain amino acid transport system / permease component M479_796 PF00356 Bacterial regulatory proteins, lacI family M479_797 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M479_797 PF03466 LysR substrate binding domain M479_798 PF00180 Isocitrate/isopropylmalate dehydrogenase M479_799 PF02028 BCCT, betaine/carnitine/choline family transporter M479_8 PF00171 Aldehyde dehydrogenase family M479_800 PF00355 Rieske [2Fe-2S] domain M479_800 PF00848 Ring hydroxylating alpha subunit (catalytic domain) M479_801 PF00175 Oxidoreductase NAD-binding domain M479_801 PF00111 2Fe-2S iron-sulfur cluster binding domain M479_801 PF00970 Oxidoreductase FAD-binding domain M479_802 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB M479_802 PF17287 POTRA domain M479_802 PF08479 POTRA domain, ShlB-type M479_803 PF13332 Hemagglutinin repeat M479_803 PF04829 Pre-toxin domain with VENN motif M479_803 PF13018 Extended Signal Peptide of Type V secretion system M479_803 PF05860 haemagglutination activity domain M479_806 PF13332 Hemagglutinin repeat M479_806 PF13018 Extended Signal Peptide of Type V secretion system M479_806 PF05860 haemagglutination activity domain M479_806 PF04829 Pre-toxin domain with VENN motif M479_81 PF05973 Phage derived protein Gp49-like (DUF891) M479_810 PF05594 Haemagluttinin repeat M479_810 PF13332 Hemagglutinin repeat M479_810 PF05860 haemagglutination activity domain M479_810 PF04829 Pre-toxin domain with VENN motif M479_810 PF15526 Novel toxin 21 M479_812 PF00872 Transposase, Mutator family M479_813 PF00005 ABC transporter M479_813 PF17912 MalK OB fold domain M479_814 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain M479_814 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III M479_814 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II M479_814 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I M479_815 PF00356 Bacterial regulatory proteins, lacI family M479_817 PF00528 Binding-protein-dependent transport system inner membrane component M479_818 PF00528 Binding-protein-dependent transport system inner membrane component M479_819 PF04041 beta-1,4-mannooligosaccharide phosphorylase M479_823 PF00924 Mechanosensitive ion channel M479_824 PF01867 CRISPR associated protein Cas1 M479_826 PF09611 CRISPR-associated protein (Cas_Csy1) M479_827 PF09614 CRISPR-associated protein (Cas_Csy2) M479_828 PF09615 CRISPR-associated protein (Cas_Csy3) M479_829 PF09618 CRISPR-associated protein (Cas_Csy4) M479_830 PF00248 Aldo/keto reductase family M479_832 PF00083 Sugar (and other) transporter M479_834 PF03466 LysR substrate binding domain M479_834 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M479_835 PF00765 Autoinducer synthase M479_836 PF00196 Bacterial regulatory proteins, luxR family M479_836 PF03472 Autoinducer binding domain M479_840 PF01594 AI-2E family transporter M479_841 PF00196 Bacterial regulatory proteins, luxR family M479_842 PF01266 FAD dependent oxidoreductase M479_843 PF13991 BssS protein family M479_844 PF00872 Transposase, Mutator family M479_845 PF06183 DinI-like family M479_846 PF01979 Amidohydrolase family M479_847 PF03992 Antibiotic biosynthesis monooxygenase M479_848 PF10150 Ribonuclease E/G family M479_848 PF00575 S1 RNA binding domain M479_848 PF12111 Polyribonucleotide phosphorylase C terminal M479_849 PF01479 S4 domain M479_849 PF00849 RNA pseudouridylate synthase M479_850 PF02545 Maf-like protein M479_851 PF02620 Large ribosomal RNA subunit accumulation protein YceD M479_852 PF01783 Ribosomal L32p protein family M479_853 PF02504 Fatty acid synthesis protein M479_854 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III M479_854 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal M479_855 PF00698 Acyl transferase domain M479_857 PF00550 Phosphopantetheine attachment site M479_858 PF02801 Beta-ketoacyl synthase, C-terminal domain M479_858 PF00109 Beta-ketoacyl synthase, N-terminal domain M479_859 PF01797 Transposase IS200 like M479_860 PF01063 Amino-transferase class IV M479_861 PF02618 YceG-like family M479_862 PF02223 Thymidylate kinase M479_863 PF09115 DNA polymerase III, delta subunit, C terminal M479_864 PF01026 TatD related DNase M479_865 PF02378 Phosphotransferase system, EIIC M479_865 PF00367 phosphotransferase system, EIIB M479_867 PF08501 Shikimate dehydrogenase substrate binding domain M479_868 PF01230 HIT domain M479_869 PF07233 Protein of unknown function (DUF1425) M479_870 PF13036 Peptidoglycan-synthase activator LpoB M479_870 PF08139 Prokaryotic membrane lipoprotein lipid attachment site M479_871 PF01636 Phosphotransferase enzyme family M479_872 PF00933 Glycosyl hydrolase family 3 N terminal domain M479_873 PF05728 Uncharacterised protein family (UPF0227) M479_874 PF07992 Pyridine nucleotide-disulphide oxidoreductase M479_877 PF00872 Transposase, Mutator family M479_878 PF05433 Glycine zipper 2TM domain M479_879 PF17757 UvrB interaction domain M479_879 PF00270 DEAD/DEAH box helicase M479_879 PF00271 Helicase conserved C-terminal domain M479_879 PF03461 TRCF domain M479_879 PF02559 CarD-like/TRCF domain M479_880 PF02687 FtsX-like permease family M479_880 PF12704 MacB-like periplasmic core domain M479_881 PF00005 ABC transporter M479_882 PF12704 MacB-like periplasmic core domain M479_882 PF02687 FtsX-like permease family M479_883 PF00480 ROK family M479_884 PF02146 Sir2 family M479_885 PF07687 Peptidase dimerisation domain M479_885 PF01546 Peptidase family M20/M25/M40 M479_886 PF08007 Cupin superfamily protein M479_887 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M479_887 PF08918 PhoQ Sensor M479_888 PF00072 Response regulator receiver domain M479_888 PF00486 Transcriptional regulatory protein, C terminal M479_890 PF00206 Lyase M479_890 PF08328 Adenylosuccinate lyase C-terminal M479_891 PF04356 Protein of unknown function (DUF489) M479_893 PF00293 NUDIX domain M479_894 PF00849 RNA pseudouridylate synthase M479_895 PF00180 Isocitrate/isopropylmalate dehydrogenase M479_896 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family M479_896 PF00356 Bacterial regulatory proteins, lacI family M479_898 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain M479_898 PF08447 PAS fold M479_899 PF05368 NmrA-like family M479_9 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain M479_9 PF00205 Thiamine pyrophosphate enzyme, central domain M479_9 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain M479_900 PF01638 HxlR-like helix-turn-helix M479_902 PF00328 Histidine phosphatase superfamily (branch 2) M479_903 PF14001 YdfZ protein M479_905 PF01037 Lrp/AsnC ligand binding domain M479_905 PF13404 AsnC-type helix-turn-helix domain M479_906 PF10777 Inner membrane protein YlaC M479_908 PF00698 Acyl transferase domain M479_908 PF14765 Polyketide synthase dehydratase M479_908 PF00550 Phosphopantetheine attachment site M479_908 PF08659 KR domain M479_908 PF02801 Beta-ketoacyl synthase, C-terminal domain M479_908 PF00109 Beta-ketoacyl synthase, N-terminal domain M479_908 PF16197 Ketoacyl-synthetase C-terminal extension M479_908 PF00107 Zinc-binding dehydrogenase M479_908 PF08240 Alcohol dehydrogenase GroES-like domain M479_909 PF16353 Domain of unknown function(DUF4981) M479_909 PF02837 Glycosyl hydrolases family 2, sugar binding domain M479_909 PF02836 Glycosyl hydrolases family 2, TIM barrel domain M479_909 PF02929 Beta galactosidase small chain M479_909 PF00703 Glycosyl hydrolases family 2 M479_91 PF00589 Phage integrase family M479_91 PF13356 Arm DNA-binding domain M479_910 PF00313 'Cold-shock' DNA-binding domain M479_911 PF10781 Dextransucrase DSRB M479_912 PF00672 HAMP domain M479_912 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain M479_912 PF02203 Tar ligand binding domain homologue M479_913 PF00672 HAMP domain M479_913 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain M479_913 PF02203 Tar ligand binding domain homologue M479_914 PF00872 Transposase, Mutator family M479_915 PF02308 MgtC family M479_916 PF00690 Cation transporter/ATPase, N-terminus M479_916 PF00689 Cation transporting ATPase, C-terminus M479_917 PF05247 Flagellar transcriptional activator (FlhD) M479_918 PF05280 Flagellar transcriptional activator (FlhC) M479_919 PF01618 MotA/TolQ/ExbB proton channel family M479_920 PF00691 OmpA family M479_920 PF13677 Membrane MotB of proton-channel complex MotA/MotB M479_921 PF01584 CheW-like domain M479_921 PF09078 CheY binding M479_921 PF01627 Hpt domain M479_921 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M479_921 PF02895 Signal transducing histidine kinase, homodimeric domain M479_922 PF01584 CheW-like domain M479_923 PF07690 Major Facilitator Superfamily M479_924 PF01042 Endoribonuclease L-PSP M479_926 PF08348 YheO-like PAS domain M479_926 PF13309 HTH domain M479_927 PF12951 Passenger-associated-transport-repeat M479_93 PF01668 SmpB protein M479_930 PF02203 Tar ligand binding domain homologue M479_930 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain M479_930 PF00672 HAMP domain M479_931 PF00672 HAMP domain M479_931 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain M479_931 PF02203 Tar ligand binding domain homologue M479_932 PF03705 CheR methyltransferase, all-alpha domain M479_932 PF01739 CheR methyltransferase, SAM binding domain M479_933 PF01339 CheB methylesterase M479_933 PF00072 Response regulator receiver domain M479_934 PF00072 Response regulator receiver domain M479_935 PF04344 Chemotaxis phosphatase, CheZ M479_936 PF01510 N-acetylmuramoyl-L-alanine amidase M479_937 PF05662 Coiled stalk of trimeric autotransporter adhesin M479_937 PF05658 Head domain of trimeric autotransporter adhesin M479_937 PF03895 YadA-like membrane anchor domain M479_937 PF13018 Extended Signal Peptide of Type V secretion system M479_938 PF13018 Extended Signal Peptide of Type V secretion system M479_938 PF05662 Coiled stalk of trimeric autotransporter adhesin M479_938 PF05658 Head domain of trimeric autotransporter adhesin M479_938 PF03895 YadA-like membrane anchor domain M479_94 PF03364 Polyketide cyclase / dehydrase and lipid transport M479_941 PF00842 Alanine racemase, C-terminal domain M479_941 PF01168 Alanine racemase, N-terminal domain M479_947 PF01695 IstB-like ATP binding protein M479_948 PF02796 Helix-turn-helix domain of resolvase M479_948 PF00665 Integrase core domain M479_95 PF03658 RnfH family Ubiquitin M479_950 PF07351 Protein of unknown function (DUF1480) M479_953 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain M479_953 PF02753 Pili assembly chaperone PapD, C-terminal domain M479_957 PF02470 MlaD protein M479_958 PF04403 Paraquat-inducible protein A M479_959 PF13185 GAF domain M479_96 PF04355 SmpA / OmlA family M479_960 PF04352 ProQ/FINO family M479_960 PF17516 ProQ C-terminal domain M479_961 PF11818 C-terminal domain of tail specific protease (DUF3340) M479_961 PF00595 PDZ domain M479_961 PF03572 Peptidase family S41 M479_961 PF17804 Tail specific protease N-terminal domain M479_963 PF01435 Peptidase family M48 M479_964 PF00419 Fimbrial protein M479_965 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain M479_965 PF02753 Pili assembly chaperone PapD, C-terminal domain M479_966 PF13954 PapC N-terminal domain M479_966 PF00577 Outer membrane usher protein M479_966 PF13953 PapC C-terminal domain M479_968 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain M479_968 PF02753 Pili assembly chaperone PapD, C-terminal domain M479_969 PF07690 Major Facilitator Superfamily M479_97 PF02463 RecF/RecN/SMC N terminal domain M479_970 PF14583 Oligogalacturonate lyase M479_971 PF09339 IclR helix-turn-helix domain M479_971 PF01614 Bacterial transcriptional regulator M479_972 PF01510 N-acetylmuramoyl-L-alanine amidase M479_974 PF04307 LexA-binding, inner membrane-associated putative hydrolase M479_975 PF06178 Oligogalacturonate-specific porin protein (KdgM) M479_976 PF01547 Bacterial extracellular solute-binding protein M479_977 PF17912 MalK OB fold domain M479_977 PF00005 ABC transporter M479_977 PF03459 TOBE domain M479_978 PF00528 Binding-protein-dependent transport system inner membrane component M479_979 PF00528 Binding-protein-dependent transport system inner membrane component M479_98 PF01513 ATP-NAD kinase M479_980 PF06917 Periplasmic pectate lyase M479_982 PF04962 KduI/IolB family M479_983 PF07883 Cupin domain M479_984 PF00872 Transposase, Mutator family M479_985 PF13419 Haloacid dehalogenase-like hydrolase M479_986 PF14002 YniB-like protein M479_988 PF00950 ABC 3 transport family M479_989 PF00950 ABC 3 transport family M479_99 PF01025 GrpE M479_990 PF00005 ABC transporter M479_991 PF01297 Zinc-uptake complex component A periplasmic M479_992 PF01464 Transglycosylase SLT domain M479_993 PF01914 MarC family integral membrane protein M479_995 PF13619 KTSC domain M479_996 PF03129 Anticodon binding domain M479_996 PF02824 TGS domain M479_996 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) M479_996 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain M479_997 PF05198 Translation initiation factor IF-3, N-terminal domain M479_997 PF00707 Translation initiation factor IF-3, C-terminal domain M479_998 PF01632 Ribosomal protein L35 M479_999 PF00453 Ribosomal protein L20