M479_1001 SM00873 B3/4 domain M479_1001 SM00874 tRNA synthetase B5 domain M479_1001 SM00896 Ferredoxin-fold anticodon binding domain M479_1002 SM00411 bacterial (prokaryotic) histone like domain M479_1006 SM00382 ATPases associated with a variety of cellular activities M479_1025 SM00382 ATPases associated with a variety of cellular activities M479_1030 SM00382 ATPases associated with a variety of cellular activities M479_1032 SM01321 M479_1032 M479_1042 SM00354 helix_turn _helix lactose operon repressor M479_1048 SM00479 M479_1048 M479_105 SM00861 Transketolase, pyrimidine binding domain M479_1060 SM00363 S4 RNA-binding domain M479_1068 SM00382 ATPases associated with a variety of cellular activities M479_1069 SM00382 ATPases associated with a variety of cellular activities M479_1073 SM01321 M479_1073 M479_1074 SM00382 ATPases associated with a variety of cellular activities M479_108 SM00881 CoA binding domain M479_1081 SM00953 M479_1081 M479_1083 SM00091 PAS domain M479_1083 SM00382 ATPases associated with a variety of cellular activities M479_1084 SM01321 M479_1084 M479_109 SM01321 M479_109 M479_1090 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain M479_1094 SM00422 helix_turn_helix, mercury resistance M479_1098 SM00890 Domain of unknown function M479_1110 SM00382 ATPases associated with a variety of cellular activities M479_1110 SM00487 DEAD-like helicases superfamily M479_1110 SM00490 helicase superfamily c-terminal domain M479_1110 SM00847 Helicase associated domain (HA2) Add an annotation M479_1112 SM00530 Helix-turn-helix XRE-family like proteins M479_1113 SM00020 Trypsin-like serine protease M479_1116 SM00867 YceI-like domain M479_1119 SM01321 M479_1119 M479_1121 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain M479_1121 SM00387 Histidine kinase-like ATPases M479_1121 SM00388 His Kinase A (phosphoacceptor) domain M479_1122 SM00448 cheY-homologous receiver domain M479_1122 SM00862 Transcriptional regulatory protein, C terminal M479_1126 SM01002 Alanine dehydrogenase/PNT, C-terminal domain M479_1126 SM01003 Alanine dehydrogenase/PNT, N-terminal domain M479_1129 SM00100 Cyclic nucleotide-monophosphate binding domain M479_1129 SM00419 helix_turn_helix, cAMP Regulatory protein M479_1131 SM00098 Alkaline phosphatase homologues M479_1142 SM00382 ATPases associated with a variety of cellular activities M479_1147 SM00354 helix_turn _helix lactose operon repressor M479_1162 SM00342 helix_turn_helix, arabinose operon control protein M479_1165 SM00382 ATPases associated with a variety of cellular activities M479_1170 SM00382 ATPases associated with a variety of cellular activities M479_1179 SM00342 helix_turn_helix, arabinose operon control protein M479_1181 SM00900 M479_1181 M479_1183 SM00478 endonuclease III M479_1183 SM00525 M479_1183 M479_1186 SM00357 Cold shock protein domain M479_1186 SM00955 M479_1186 M479_1191 SM01007 Class II Aldolase and Adducin N-terminal domain M479_1194 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family M479_1196 SM00028 Tetratricopeptide repeats M479_1198 SM00014 Acid phosphatase homologues M479_1203 SM01321 M479_1203 M479_1204 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain M479_1204 SM00437 Bacterial DNA topoisomerase I DNA-binding domain M479_1204 SM00493 M479_1204 M479_1208 SM00822 M479_1208 M479_1210 SM00363 S4 RNA-binding domain M479_1212 SM00481 DNA polymerase alpha chain like domain M479_1219 SM00749 bacterial OsmY and nodulation domain M479_1232 SM00155 Phospholipase D. Active site motifs. M479_1235 SM00382 ATPases associated with a variety of cellular activities M479_1236 SM00382 ATPases associated with a variety of cellular activities M479_1243 SM00528 Domain in histone-like proteins of HNS family M479_1245 SM00984 UDP binding domain M479_1246 SM00448 cheY-homologous receiver domain M479_1256 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain M479_1256 SM00437 Bacterial DNA topoisomerase I DNA-binding domain M479_1256 SM00493 M479_1256 M479_1260 SM00870 M479_1260 M479_1264 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain M479_1267 SM00763 PrkA AAA domain M479_1275 SM00345 helix_turn_helix gluconate operon transcriptional repressor M479_1285 SM00060 Fibronectin type 3 domain M479_1291 SM01040 BRO family, N-terminal domain M479_1296 SM00232 JAB/MPN domain M479_1298 SM01321 M479_1298 M479_1299 SM01321 M479_1299 M479_13 SM00382 ATPases associated with a variety of cellular activities M479_130 SM00855 Phosphoglycerate mutase family M479_1304 SM00635 Bacterial Ig-like domain 2 M479_1310 SM00635 Bacterial Ig-like domain 2 M479_1325 SM01040 BRO family, N-terminal domain M479_1331 SM00382 ATPases associated with a variety of cellular activities M479_1341 SM00341 Helicase and RNase D C-terminal M479_1341 SM00474 3'-5' exonuclease M479_1345 SM00487 DEAD-like helicases superfamily M479_1345 SM00491 M479_1345 M479_1355 SM00257 Lysin motif M479_1357 SM00382 ATPases associated with a variety of cellular activities M479_1359 SM00382 ATPases associated with a variety of cellular activities M479_1360 SM00278 Helix-hairpin-helix DNA-binding motif class 1 M479_1371 SM00836 DALR anticodon binding domain M479_1371 SM01016 Arginyl tRNA synthetase N terminal dom M479_1372 SM00912 haemagglutination activity domain M479_1380 SM00481 DNA polymerase alpha chain like domain M479_1385 SM01321 M479_1385 M479_1397 SM00937 M479_1397 M479_140 SM00382 ATPases associated with a variety of cellular activities M479_1401 SM01400 M479_1401 M479_1407 SM00450 Rhodanese Homology Domain M479_1414 SM00448 cheY-homologous receiver domain M479_1416 SM00382 ATPases associated with a variety of cellular activities M479_1417 SM00862 Transcriptional regulatory protein, C terminal M479_1418 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain M479_1418 SM00387 Histidine kinase-like ATPases M479_1418 SM00388 His Kinase A (phosphoacceptor) domain M479_1429 SM00671 Sel1-like repeats. M479_1431 SM00671 Sel1-like repeats. M479_1447 SM00345 helix_turn_helix gluconate operon transcriptional repressor M479_1447 SM00866 M479_1447 M479_145 SM00382 ATPases associated with a variety of cellular activities M479_1450 SM00382 ATPases associated with a variety of cellular activities M479_1462 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain M479_1462 SM00387 Histidine kinase-like ATPases M479_1476 SM00382 ATPases associated with a variety of cellular activities M479_1485 SM00420 helix_turn_helix, Deoxyribose operon repressor M479_1485 SM01134 M479_1485 M479_149 SM00729 Elongator protein 3, MiaB family, Radical SAM M479_149 SM00876 Biotin and Thiamin Synthesis associated domain M479_1499 SM00421 helix_turn_helix, Lux Regulon M479_1499 SM00448 cheY-homologous receiver domain M479_1500 SM00062 Bacterial periplasmic substrate-binding proteins M479_1500 SM00387 Histidine kinase-like ATPases M479_1500 SM00388 His Kinase A (phosphoacceptor) domain M479_1500 SM00448 cheY-homologous receiver domain M479_1512 SM00382 ATPases associated with a variety of cellular activities M479_1513 SM00382 ATPases associated with a variety of cellular activities M479_1514 SM00342 helix_turn_helix, arabinose operon control protein M479_1515 SM00823 Phosphopantetheine attachment site M479_1516 SM00822 M479_1516 M479_1516 SM00823 Phosphopantetheine attachment site M479_1516 SM00824 Thioesterase M479_1516 SM00825 Beta-ketoacyl synthase M479_1516 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. M479_1528 SM00382 ATPases associated with a variety of cellular activities M479_153 SM00382 ATPases associated with a variety of cellular activities M479_1532 SM00382 ATPases associated with a variety of cellular activities M479_1537 SM00345 helix_turn_helix gluconate operon transcriptional repressor M479_1537 SM00866 M479_1537 M479_154 SM00487 DEAD-like helicases superfamily M479_154 SM00490 helicase superfamily c-terminal domain M479_1566 SM00278 Helix-hairpin-helix DNA-binding motif class 1 M479_1566 SM00465 GIY-YIG type nucleases (URI domain) M479_1567 SM00421 helix_turn_helix, Lux Regulon M479_1567 SM00448 cheY-homologous receiver domain M479_158 SM00729 Elongator protein 3, MiaB family, Radical SAM M479_1584 SM00382 ATPases associated with a variety of cellular activities M479_1586 SM00062 Bacterial periplasmic substrate-binding proteins M479_1595 SM00342 helix_turn_helix, arabinose operon control protein M479_1596 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. M479_1597 SM00478 endonuclease III M479_1604 SM00382 ATPases associated with a variety of cellular activities M479_1618 SM00382 ATPases associated with a variety of cellular activities M479_1621 SM01007 Class II Aldolase and Adducin N-terminal domain M479_1625 SM00047 Lysozyme subfamily 2 M479_163 SM01321 M479_163 M479_1634 SM00858 M479_1634 M479_1637 SM00634 Bacterial Ig-like domain (group 1) M479_1638 SM01321 M479_1638 M479_1653 SM01022 M479_1653 M479_1655 SM00487 DEAD-like helicases superfamily M479_1655 SM00490 helicase superfamily c-terminal domain M479_1661 SM00903 Flavin reductase like domain M479_1671 SM00347 helix_turn_helix multiple antibiotic resistance protein M479_1679 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) M479_1679 SM00091 PAS domain M479_1679 SM00267 diguanylate cyclase M479_1683 SM00357 Cold shock protein domain M479_1693 SM00342 helix_turn_helix, arabinose operon control protein M479_1695 SM00382 ATPases associated with a variety of cellular activities M479_1696 SM01321 M479_1696 M479_1697 SM00090 RIO-like kinase M479_1701 SM00354 helix_turn _helix lactose operon repressor M479_1710 SM00421 helix_turn_helix, Lux Regulon M479_1710 SM00448 cheY-homologous receiver domain M479_172 SM01321 M479_172 M479_1720 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain M479_1726 SM00634 Bacterial Ig-like domain (group 1) M479_1733 SM00382 ATPases associated with a variety of cellular activities M479_1734 SM00382 ATPases associated with a variety of cellular activities M479_1746 SM01350 M479_1746 M479_1754 SM00382 ATPases associated with a variety of cellular activities M479_1756 SM01006 Siderophore biosynthesis protein domain M479_1760 SM01091 Transporter associated domain M479_1766 SM01321 M479_1766 M479_1774 SM00919 Malic enzyme, NAD binding domain M479_1774 SM01274 M479_1774 M479_1777 SM00382 ATPases associated with a variety of cellular activities M479_1779 SM00382 ATPases associated with a variety of cellular activities M479_178 SM01118 M479_178 M479_1785 SM00829 Enoylreductase M479_179 SM00507 HNH nucleases M479_1790 SM00382 ATPases associated with a variety of cellular activities M479_1792 SM00852 Probable molybdopterin binding domain M479_1795 SM00382 ATPases associated with a variety of cellular activities M479_1814 SM00382 ATPases associated with a variety of cellular activities M479_1814 SM01086 C-terminal, D2-small domain, of ClpB protein M479_182 SM00382 ATPases associated with a variety of cellular activities M479_1822 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. M479_1830 SM00825 Beta-ketoacyl synthase M479_1842 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase M479_1843 SM00992 Hemimethylated DNA-binding protein YccV like M479_1844 SM00881 CoA binding domain M479_1846 SM00851 MGS-like domain M479_1853 SM01321 M479_1853 M479_1859 SM00382 ATPases associated with a variety of cellular activities M479_1860 SM00825 Beta-ketoacyl synthase M479_1861 SM01321 M479_1861 M479_1866 SM00358 Double-stranded RNA binding motif M479_1866 SM00535 Ribonuclease III family M479_1876 SM00487 DEAD-like helicases superfamily M479_1876 SM00490 helicase superfamily c-terminal domain M479_1878 SM00248 ankyrin repeats M479_1882 SM00986 Uracil DNA glycosylase superfamily M479_1882 SM00987 UreE urease accessory protein, C-terminal domain M479_1887 SM00797 Allophanate hydrolase subunit 2 M479_1888 SM00796 Allophanate hydrolase subunit 1 M479_1899 SM00387 Histidine kinase-like ATPases M479_1899 SM00388 His Kinase A (phosphoacceptor) domain M479_1900 SM00448 cheY-homologous receiver domain M479_1900 SM00862 Transcriptional regulatory protein, C terminal M479_1909 SM00342 helix_turn_helix, arabinose operon control protein M479_191 SM00382 ATPases associated with a variety of cellular activities M479_1922 SM00988 UreE urease accessory protein, N-terminal domain M479_1927 SM00382 ATPases associated with a variety of cellular activities M479_1928 SM00382 ATPases associated with a variety of cellular activities M479_1932 SM00357 Cold shock protein domain M479_194 SM00450 Rhodanese Homology Domain M479_1941 SM00382 ATPases associated with a variety of cellular activities M479_1947 SM00479 M479_1947 M479_1950 SM00849 Metallo-beta-lactamase superfamily M479_1951 SM00257 Lysin motif M479_1961 SM00382 ATPases associated with a variety of cellular activities M479_1961 SM00930 M479_1961 M479_1969 SM01322 M479_1969 M479_197 SM00382 ATPases associated with a variety of cellular activities M479_1973 SM00977 TilS substrate C-terminal domain M479_1976 SM00481 DNA polymerase alpha chain like domain M479_1982 SM00935 Outer membrane protein (OmpH-like) M479_1984 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. M479_1993 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. M479_1999 SM01321 M479_1999 M479_20 SM00382 ATPases associated with a variety of cellular activities M479_2003 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs M479_2003 SM00475 5'-3' exonuclease M479_2011 SM00925 MltA specific insert domain M479_2014 SM00646 M479_2014 M479_2017 SM00382 ATPases associated with a variety of cellular activities M479_2030 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. M479_2032 SM00927 DNA mismatch repair enzyme MutH M479_2037 SM00563 Phosphate acyltransferases M479_2040 SM00354 helix_turn _helix lactose operon repressor M479_2044 SM00849 Metallo-beta-lactamase superfamily M479_2045 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). M479_2045 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain M479_2045 SM00319 Homologues of the ligand binding domain of Tar M479_2050 SM00862 Transcriptional regulatory protein, C terminal M479_206 SM00487 DEAD-like helicases superfamily M479_206 SM00488 M479_206 M479_206 SM00491 M479_206 M479_2062 SM00382 ATPases associated with a variety of cellular activities M479_2066 SM00947 Carbonic anhydrase M479_2069 SM00869 Autotransporter beta-domain M479_207 SM01060 M479_207 M479_2071 SM00382 ATPases associated with a variety of cellular activities M479_2075 SM00420 helix_turn_helix, Deoxyribose operon repressor M479_2075 SM01134 M479_2075 M479_2091 SM00354 helix_turn _helix lactose operon repressor M479_2094 SM00354 helix_turn _helix lactose operon repressor M479_210 SM00852 Probable molybdopterin binding domain M479_2103 SM00382 ATPases associated with a variety of cellular activities M479_2104 SM00382 ATPases associated with a variety of cellular activities M479_2125 SM00778 Zinc-binding domain of primase-helicase M479_2125 SM00885 D5 N terminal like M479_2126 SM00530 Helix-turn-helix XRE-family like proteins M479_2128 SM00530 Helix-turn-helix XRE-family like proteins M479_2134 SM00937 M479_2134 M479_2140 SM00387 Histidine kinase-like ATPases M479_2140 SM00388 His Kinase A (phosphoacceptor) domain M479_2141 SM00448 cheY-homologous receiver domain M479_2141 SM00862 Transcriptional regulatory protein, C terminal M479_2155 SM01011 Aminopeptidase P, N-terminal domain M479_2159 SM01321 M479_2159 M479_216 SM00434 DNA Topoisomerase IV M479_2168 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain M479_2169 SM01321 M479_2169 M479_217 SM00387 Histidine kinase-like ATPases M479_217 SM00388 His Kinase A (phosphoacceptor) domain M479_217 SM00448 cheY-homologous receiver domain M479_2170 SM00861 Transketolase, pyrimidine binding domain M479_2176 SM00731 SprT homologues. M479_218 SM00421 helix_turn_helix, Lux Regulon M479_218 SM00448 cheY-homologous receiver domain M479_2181 SM00732 Likely ribonuclease with RNase H fold. M479_2184 SM00382 ATPases associated with a variety of cellular activities M479_2188 SM01152 M479_2188 M479_2190 SM00729 Elongator protein 3, MiaB family, Radical SAM M479_2197 SM00478 endonuclease III M479_2197 SM00525 M479_2197 M479_2203 SM00382 ATPases associated with a variety of cellular activities M479_2214 SM00382 ATPases associated with a variety of cellular activities M479_2214 SM01086 C-terminal, D2-small domain, of ClpB protein M479_2227 SM00421 helix_turn_helix, Lux Regulon M479_2234 SM01006 Siderophore biosynthesis protein domain M479_2257 SM00862 Transcriptional regulatory protein, C terminal M479_2271 SM00858 M479_2271 M479_2275 SM00382 ATPases associated with a variety of cellular activities M479_2280 SM00382 ATPases associated with a variety of cellular activities M479_2295 SM01321 M479_2295 M479_230 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). M479_230 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain M479_2314 SM00342 helix_turn_helix, arabinose operon control protein M479_2320 SM00563 Phosphate acyltransferases M479_2321 SM00434 DNA Topoisomerase IV M479_2324 SM00387 Histidine kinase-like ATPases M479_2324 SM00433 TopoisomeraseII M479_234 SM00530 Helix-turn-helix XRE-family like proteins M479_2340 SM01118 M479_2340 M479_2341 SM00287 Bacterial SH3 domain homologues M479_2342 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. M479_2344 SM00905 Dihydroneopterin aldolase M479_2345 SM01207 M479_2345 M479_2348 SM00400 zinc finger M479_2348 SM00493 M479_2348 M479_2348 SM00766 DNA primase DnaG DnaB-binding M479_2361 SM00382 ATPases associated with a variety of cellular activities M479_237 SM01007 Class II Aldolase and Adducin N-terminal domain M479_2376 SM01217 M479_2376 M479_238 SM00420 helix_turn_helix, Deoxyribose operon repressor M479_238 SM01134 M479_238 M479_2381 SM00354 helix_turn _helix lactose operon repressor M479_2383 SM00382 ATPases associated with a variety of cellular activities M479_2386 SM00869 Autotransporter beta-domain M479_2391 SM00912 haemagglutination activity domain M479_2393 SM00327 von Willebrand factor (vWF) type A domain M479_2395 SM00327 von Willebrand factor (vWF) type A domain M479_2396 SM00327 von Willebrand factor (vWF) type A domain M479_2398 SM00220 Serine/Threonine protein kinases, catalytic domain M479_2402 SM00869 Autotransporter beta-domain M479_2407 SM01321 M479_2407 M479_2409 SM00858 M479_2409 M479_2414 SM00345 helix_turn_helix gluconate operon transcriptional repressor M479_2414 SM00895 M479_2414 M479_2430 SM00749 bacterial OsmY and nodulation domain M479_2433 SM00073 Histidine Phosphotransfer domain M479_2433 SM00091 PAS domain M479_2433 SM00387 Histidine kinase-like ATPases M479_2433 SM00388 His Kinase A (phosphoacceptor) domain M479_2433 SM00448 cheY-homologous receiver domain M479_2434 SM00729 Elongator protein 3, MiaB family, Radical SAM M479_2444 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. M479_2445 SM01321 M479_2445 M479_2446 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. M479_2453 SM00382 ATPases associated with a variety of cellular activities M479_2455 SM00116 Domain in cystathionine beta-synthase and other proteins. M479_2459 SM00382 ATPases associated with a variety of cellular activities M479_2469 SM00354 helix_turn _helix lactose operon repressor M479_2471 SM00642 Alpha-amylase domain M479_2498 SM00316 Ribosomal protein S1-like RNA-binding domain M479_25 SM00421 helix_turn_helix, Lux Regulon M479_2503 SM00052 Putative diguanylate phosphodiesterase M479_2503 SM00267 diguanylate cyclase M479_2504 SM00829 Enoylreductase M479_2509 SM00878 Biotin carboxylase C-terminal domain M479_2517 SM00345 helix_turn_helix gluconate operon transcriptional repressor M479_2517 SM00895 M479_2517 M479_2521 SM00849 Metallo-beta-lactamase superfamily M479_2523 SM00357 Cold shock protein domain M479_2524 SM00357 Cold shock protein domain M479_2525 SM01321 M479_2525 M479_2533 SM00382 ATPases associated with a variety of cellular activities M479_2540 SM00382 ATPases associated with a variety of cellular activities M479_2543 SM00062 Bacterial periplasmic substrate-binding proteins M479_2545 SM01133 M479_2545 M479_2548 SM00342 helix_turn_helix, arabinose operon control protein M479_2556 SM00530 Helix-turn-helix XRE-family like proteins M479_2559 SM00860 SMI1 / KNR4 family M479_2570 SM00382 ATPases associated with a variety of cellular activities M479_2570 SM01086 C-terminal, D2-small domain, of ClpB protein M479_2587 SM00382 ATPases associated with a variety of cellular activities M479_2596 SM00912 haemagglutination activity domain M479_2598 SM01018 B12 binding domain M479_2599 SM00346 helix_turn_helix isocitrate lyase regulation M479_2613 SM00382 ATPases associated with a variety of cellular activities M479_2613 SM01086 C-terminal, D2-small domain, of ClpB protein M479_2615 SM00363 S4 RNA-binding domain M479_2618 SM00830 Chorismate mutase type II M479_2619 SM00830 Chorismate mutase type II M479_2621 SM00382 ATPases associated with a variety of cellular activities M479_2624 SM00448 cheY-homologous receiver domain M479_2624 SM00850 LytTr DNA-binding domain M479_2632 SM00382 ATPases associated with a variety of cellular activities M479_2632 SM00962 SRP54-type protein, GTPase domain M479_2632 SM00963 SRP54-type protein, helical bundle domain M479_2634 SM01091 Transporter associated domain M479_2643 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain M479_2645 SM00382 ATPases associated with a variety of cellular activities M479_2651 SM00861 Transketolase, pyrimidine binding domain M479_2654 SM00382 ATPases associated with a variety of cellular activities M479_2663 SM00926 Molybdopterin oxidoreductase Fe4S4 domain M479_2664 SM01007 Class II Aldolase and Adducin N-terminal domain M479_2665 SM00420 helix_turn_helix, Deoxyribose operon repressor M479_2665 SM01134 M479_2665 M479_2667 SM00382 ATPases associated with a variety of cellular activities M479_2678 SM01235 M479_2678 M479_2679 SM00062 Bacterial periplasmic substrate-binding proteins M479_268 SM01321 M479_268 M479_2682 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor M479_2685 SM01120 M479_2685 M479_2688 SM00829 Enoylreductase M479_2690 SM00533 DNA-binding domain of DNA mismatch repair MUTS family M479_2690 SM00534 ATPase domain of DNA mismatch repair MUTS family M479_2692 SM00257 Lysin motif M479_27 SM00357 Cold shock protein domain M479_270 SM00487 DEAD-like helicases superfamily M479_270 SM00490 helicase superfamily c-terminal domain M479_271 SM00363 S4 RNA-binding domain M479_2714 SM01192 M479_2714 M479_2714 SM01193 M479_2714 M479_2717 SM00954 Region found in RelA / SpoT proteins M479_2718 SM00073 Histidine Phosphotransfer domain M479_2718 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain M479_2718 SM00387 Histidine kinase-like ATPases M479_2718 SM00388 His Kinase A (phosphoacceptor) domain M479_2718 SM00448 cheY-homologous receiver domain M479_2719 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. M479_2720 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. M479_2729 SM00382 ATPases associated with a variety of cellular activities M479_2731 SM00487 DEAD-like helicases superfamily M479_2731 SM00490 helicase superfamily c-terminal domain M479_2731 SM00847 Helicase associated domain (HA2) Add an annotation M479_274 SM00382 ATPases associated with a variety of cellular activities M479_2744 SM00382 ATPases associated with a variety of cellular activities M479_2745 SM00947 Carbonic anhydrase M479_2754 SM01321 M479_2754 M479_2758 SM00345 helix_turn_helix gluconate operon transcriptional repressor M479_2758 SM00895 M479_2758 M479_2761 SM00644 M479_2761 M479_2766 SM01240 M479_2766 M479_2770 SM01321 M479_2770 M479_2773 SM00382 ATPases associated with a variety of cellular activities M479_2775 SM00957 SecA DEAD-like domain M479_2775 SM00958 SecA preprotein cross-linking domain M479_2779 SM00864 Tubulin/FtsZ family, GTPase domain M479_2779 SM00865 Tubulin/FtsZ family, C-terminal domain M479_278 SM00052 Putative diguanylate phosphodiesterase M479_2780 SM00842 Cell division protein FtsA M479_2795 SM01321 M479_2795 M479_2796 SM00354 helix_turn _helix lactose operon repressor M479_2797 SM01321 M479_2797 M479_2804 SM00917 LeuA allosteric (dimerisation) domain M479_2805 SM01329 M479_2805 M479_281 SM00014 Acid phosphatase homologues M479_2813 SM00382 ATPases associated with a variety of cellular activities M479_2815 SM00486 DNA polymerase type-B family M479_2816 SM00487 DEAD-like helicases superfamily M479_2816 SM00490 helicase superfamily c-terminal domain M479_282 SM00833 Cobalamin synthesis protein cobW C-terminal domain M479_2827 SM00382 ATPases associated with a variety of cellular activities M479_2827 SM01086 C-terminal, D2-small domain, of ClpB protein M479_2837 SM00271 DnaJ molecular chaperone homology domain M479_284 SM00345 helix_turn_helix gluconate operon transcriptional repressor M479_284 SM00895 M479_284 M479_2841 SM00650 Ribosomal RNA adenine dimethylases M479_2849 SM00851 MGS-like domain M479_2849 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain M479_2850 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain M479_2856 SM00904 Riboflavin kinase M479_2860 SM00271 DnaJ molecular chaperone homology domain M479_2865 SM00852 Probable molybdopterin binding domain M479_287 SM00841 Elongation factor P, C-terminal M479_287 SM01185 M479_287 M479_2873 SM00448 cheY-homologous receiver domain M479_2873 SM00862 Transcriptional regulatory protein, C terminal M479_2876 SM00855 Phosphoglycerate mutase family M479_2877 SM00342 helix_turn_helix, arabinose operon control protein M479_2877 SM00871 Bacterial transcription activator, effector binding domain M479_2881 SM00831 Cation transporter/ATPase, N-terminus M479_2883 SM00267 diguanylate cyclase M479_2885 SM00382 ATPases associated with a variety of cellular activities M479_2888 SM00530 Helix-turn-helix XRE-family like proteins M479_2889 SM00382 ATPases associated with a variety of cellular activities M479_2894 SM00941 Pyrimidine nucleoside phosphorylase C-terminal domain M479_2895 SM01133 M479_2895 M479_2901 SM00749 bacterial OsmY and nodulation domain M479_2908 SM00267 diguanylate cyclase M479_2918 SM00382 ATPases associated with a variety of cellular activities M479_2922 SM01133 M479_2922 M479_2928 SM00342 helix_turn_helix, arabinose operon control protein M479_2943 SM00382 ATPases associated with a variety of cellular activities M479_2945 SM00382 ATPases associated with a variety of cellular activities M479_2963 SM00382 ATPases associated with a variety of cellular activities M479_2964 SM00382 ATPases associated with a variety of cellular activities M479_2968 SM00345 helix_turn_helix gluconate operon transcriptional repressor M479_2968 SM00866 M479_2968 M479_297 SM00382 ATPases associated with a variety of cellular activities M479_2973 SM00382 ATPases associated with a variety of cellular activities M479_2974 SM00382 ATPases associated with a variety of cellular activities M479_2976 SM00072 Guanylate kinase homologues. M479_2977 SM00849 Metallo-beta-lactamase superfamily M479_2978 SM00859 Semialdehyde dehydrogenase, NAD binding domain M479_2981 SM00382 ATPases associated with a variety of cellular activities M479_2997 SM00530 Helix-turn-helix XRE-family like proteins M479_2999 SM00487 DEAD-like helicases superfamily M479_2999 SM00490 helicase superfamily c-terminal domain M479_3 SM01359 M479_3 M479_3 SM01360 M479_3 M479_30 SM00729 Elongator protein 3, MiaB family, Radical SAM M479_3000 SM00028 Tetratricopeptide repeats M479_3001 SM00316 Ribosomal protein S1-like RNA-binding domain M479_3001 SM00322 K homology RNA-binding domain M479_3010 SM00642 Alpha-amylase domain M479_3011 SM00642 Alpha-amylase domain M479_3013 SM00257 Lysin motif M479_3013 SM00634 Bacterial Ig-like domain (group 1) M479_3018 SM00859 Semialdehyde dehydrogenase, NAD binding domain M479_3026 SM00354 helix_turn _helix lactose operon repressor M479_3029 SM00448 cheY-homologous receiver domain M479_3029 SM00862 Transcriptional regulatory protein, C terminal M479_303 SM00862 Transcriptional regulatory protein, C terminal M479_3035 SM00382 ATPases associated with a variety of cellular activities M479_3036 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain M479_3036 SM00387 Histidine kinase-like ATPases M479_3036 SM00388 His Kinase A (phosphoacceptor) domain M479_3036 SM00448 cheY-homologous receiver domain M479_3039 SM01321 M479_3039 M479_3042 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase M479_3043 SM00235 Zinc-dependent metalloprotease M479_3054 SM00869 Autotransporter beta-domain M479_3058 SM00052 Putative diguanylate phosphodiesterase M479_3067 SM00052 Putative diguanylate phosphodiesterase M479_3067 SM00267 diguanylate cyclase M479_3069 SM00382 ATPases associated with a variety of cellular activities M479_3070 SM00382 ATPases associated with a variety of cellular activities M479_3076 SM00912 haemagglutination activity domain M479_308 SM00518 AP endonuclease family 2 M479_3080 SM00387 Histidine kinase-like ATPases M479_3081 SM00421 helix_turn_helix, Lux Regulon M479_3081 SM00448 cheY-homologous receiver domain M479_3083 SM00382 ATPases associated with a variety of cellular activities M479_3088 SM00967 RNA 2'-O ribose methyltransferase substrate binding M479_3089 SM00316 Ribosomal protein S1-like RNA-binding domain M479_3089 SM00357 Cold shock protein domain M479_3089 SM00955 M479_3089 M479_3091 SM00788 Adenylosuccinate synthetase M479_3093 SM00244 prohibitin homologues M479_3094 SM00244 prohibitin homologues M479_3098 SM00853 MutL C terminal dimerisation domain M479_3098 SM01340 M479_3098 M479_3099 SM00257 Lysin motif M479_3099 SM00646 M479_3099 M479_3105 SM00479 M479_3105 M479_3115 SM00841 Elongation factor P, C-terminal M479_3115 SM01185 M479_3115 M479_3119 SM00883 Chaperonin 10 Kd subunit M479_3125 SM00926 Molybdopterin oxidoreductase Fe4S4 domain M479_313 SM01321 M479_313 M479_3131 SM01276 M479_3131 M479_3136 SM00342 helix_turn_helix, arabinose operon control protein M479_3137 SM00342 helix_turn_helix, arabinose operon control protein M479_3142 SM01007 Class II Aldolase and Adducin N-terminal domain M479_3149 SM01005 Alanine racemase, C-terminal domain M479_3150 SM00382 ATPases associated with a variety of cellular activities M479_3151 SM00829 Enoylreductase M479_3157 SM00563 Phosphate acyltransferases M479_316 SM00382 ATPases associated with a variety of cellular activities M479_3161 SM00869 Autotransporter beta-domain M479_3162 SM00060 Fibronectin type 3 domain M479_3181 SM00729 Elongator protein 3, MiaB family, Radical SAM M479_3189 SM00382 ATPases associated with a variety of cellular activities M479_3202 SM00382 ATPases associated with a variety of cellular activities M479_3210 SM00342 helix_turn_helix, arabinose operon control protein M479_3214 SM00387 Histidine kinase-like ATPases M479_3214 SM00388 His Kinase A (phosphoacceptor) domain M479_3214 SM00448 cheY-homologous receiver domain M479_3215 SM00421 helix_turn_helix, Lux Regulon M479_3215 SM00448 cheY-homologous receiver domain M479_3222 SM00382 ATPases associated with a variety of cellular activities M479_323 SM00382 ATPases associated with a variety of cellular activities M479_323 SM00930 M479_323 M479_3243 SM00422 helix_turn_helix, mercury resistance M479_3245 SM00662 RNA polymerases D M479_3246 SM00363 S4 RNA-binding domain M479_3246 SM01390 M479_3246 M479_325 SM00936 Penicillin-binding protein 5, C-terminal domain M479_3259 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. M479_3260 SM01374 M479_3260 M479_3264 SM00322 K homology RNA-binding domain M479_3267 SM01382 M479_3267 M479_3267 SM01383 M479_3267 M479_327 SM00420 helix_turn_helix, Deoxyribose operon repressor M479_327 SM01134 M479_327 M479_3271 SM01403 M479_3271 M479_3274 SM01321 M479_3274 M479_3276 SM00838 Elongation factor G C-terminus M479_3276 SM00889 Elongation factor G, domain IV M479_328 SM01133 M479_328 M479_3289 SM00382 ATPases associated with a variety of cellular activities M479_329 SM00014 Acid phosphatase homologues M479_3295 SM00382 ATPases associated with a variety of cellular activities M479_3296 SM00062 Bacterial periplasmic substrate-binding proteins M479_33 SM00936 Penicillin-binding protein 5, C-terminal domain M479_3303 SM00100 Cyclic nucleotide-monophosphate binding domain M479_3303 SM00419 helix_turn_helix, cAMP Regulatory protein M479_3310 SM00354 helix_turn _helix lactose operon repressor M479_3335 SM00363 S4 RNA-binding domain M479_3338 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain M479_3338 SM00387 Histidine kinase-like ATPases M479_3338 SM00388 His Kinase A (phosphoacceptor) domain M479_3339 SM00448 cheY-homologous receiver domain M479_3339 SM00862 Transcriptional regulatory protein, C terminal M479_3341 SM00316 Ribosomal protein S1-like RNA-binding domain M479_3341 SM00732 Likely ribonuclease with RNase H fold. M479_3342 SM00899 M479_3342 M479_3351 SM00421 helix_turn_helix, Lux Regulon M479_3352 SM00450 Rhodanese Homology Domain M479_3354 SM00420 helix_turn_helix, Deoxyribose operon repressor M479_3354 SM01134 M479_3354 M479_336 SM00382 ATPases associated with a variety of cellular activities M479_3369 SM00926 Molybdopterin oxidoreductase Fe4S4 domain M479_3372 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). M479_3372 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain M479_3372 SM01358 M479_3372 M479_3390 SM00642 Alpha-amylase domain M479_3404 SM00387 Histidine kinase-like ATPases M479_3404 SM00433 TopoisomeraseII M479_3406 SM00480 DNA polymerase III beta subunit M479_3407 SM00382 ATPases associated with a variety of cellular activities M479_3407 SM00760 Bacterial dnaA protein helix-turn-helix domain M479_3411 SM01234 M479_3411 M479_342 SM00244 prohibitin homologues M479_3421 SM00062 Bacterial periplasmic substrate-binding proteins M479_3424 SM00382 ATPases associated with a variety of cellular activities M479_3431 SM00382 ATPases associated with a variety of cellular activities M479_3440 SM01228 M479_3440 M479_3442 SM00344 helix_turn_helix ASNC type M479_3444 SM00327 von Willebrand factor (vWF) type A domain M479_3445 SM00382 ATPases associated with a variety of cellular activities M479_3452 SM00345 helix_turn_helix gluconate operon transcriptional repressor M479_3452 SM00895 M479_3452 M479_346 SM00382 ATPases associated with a variety of cellular activities M479_3463 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs M479_3463 SM00474 3'-5' exonuclease M479_3463 SM00475 5'-3' exonuclease M479_3463 SM00482 DNA polymerase A domain M479_3466 SM00729 Elongator protein 3, MiaB family, Radical SAM M479_3467 SM00382 ATPases associated with a variety of cellular activities M479_3467 SM00448 cheY-homologous receiver domain M479_3468 SM00091 PAS domain M479_3468 SM00387 Histidine kinase-like ATPases M479_3468 SM00388 His Kinase A (phosphoacceptor) domain M479_3469 SM01230 M479_3469 M479_3474 SM00382 ATPases associated with a variety of cellular activities M479_3480 SM00487 DEAD-like helicases superfamily M479_3480 SM00490 helicase superfamily c-terminal domain M479_3482 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. M479_3482 SM00954 Region found in RelA / SpoT proteins M479_3483 SM01409 M479_3483 M479_3484 SM00072 Guanylate kinase homologues. M479_3485 SM00532 Ligase N family M479_3497 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain M479_3497 SM01232 M479_3497 M479_3504 SM00829 Enoylreductase M479_3509 SM00450 Rhodanese Homology Domain M479_3513 SM00971 Serine acetyltransferase, N-terminal M479_3515 SM00342 helix_turn_helix, arabinose operon control protein M479_3516 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain M479_3516 SM00387 Histidine kinase-like ATPases M479_3516 SM00388 His Kinase A (phosphoacceptor) domain M479_3517 SM00448 cheY-homologous receiver domain M479_3517 SM00862 Transcriptional regulatory protein, C terminal M479_352 SM00062 Bacterial periplasmic substrate-binding proteins M479_352 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. M479_353 SM00382 ATPases associated with a variety of cellular activities M479_3538 SM01321 M479_3538 M479_3539 SM00382 ATPases associated with a variety of cellular activities M479_354 SM00830 Chorismate mutase type II M479_3545 SM00382 ATPases associated with a variety of cellular activities M479_3545 SM01086 C-terminal, D2-small domain, of ClpB protein M479_3548 SM00354 helix_turn _helix lactose operon repressor M479_3550 SM00487 DEAD-like helicases superfamily M479_3550 SM00490 helicase superfamily c-terminal domain M479_3569 SM00382 ATPases associated with a variety of cellular activities M479_3571 SM00342 helix_turn_helix, arabinose operon control protein M479_3578 SM00530 Helix-turn-helix XRE-family like proteins M479_3580 SM00382 ATPases associated with a variety of cellular activities M479_3602 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. M479_3602 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. M479_3603 SM00649 Ribosomal protein L11/L12 M479_3609 SM00663 RNA polymerase I subunit A N-terminus M479_3610 SM00876 Biotin and Thiamin Synthesis associated domain M479_3624 SM00411 bacterial (prokaryotic) histone like domain M479_3626 SM01209 M479_3626 M479_3626 SM01210 M479_3626 M479_3627 SM00798 AICARFT/IMPCHase bienzyme M479_3627 SM00851 MGS-like domain M479_3637 SM00382 ATPases associated with a variety of cellular activities M479_3642 SM00382 ATPases associated with a variety of cellular activities M479_3658 SM00507 HNH nucleases M479_366 SM00382 ATPases associated with a variety of cellular activities M479_3669 SM00487 DEAD-like helicases superfamily M479_3669 SM00490 helicase superfamily c-terminal domain M479_367 SM00357 Cold shock protein domain M479_3671 SM00357 Cold shock protein domain M479_3671 SM00382 ATPases associated with a variety of cellular activities M479_3671 SM00959 Rho termination factor, N-terminal domain M479_3675 SM00984 UDP binding domain M479_369 SM00382 ATPases associated with a variety of cellular activities M479_369 SM01086 C-terminal, D2-small domain, of ClpB protein M479_3690 SM01321 M479_3690 M479_3696 SM01219 M479_3696 M479_370 SM01321 M479_370 M479_371 SM00316 Ribosomal protein S1-like RNA-binding domain M479_3710 SM00341 Helicase and RNase D C-terminal M479_3710 SM00487 DEAD-like helicases superfamily M479_3710 SM00490 helicase superfamily c-terminal domain M479_3710 SM00956 M479_3710 M479_3729 SM00382 ATPases associated with a variety of cellular activities M479_3729 SM00962 SRP54-type protein, GTPase domain M479_3729 SM00963 SRP54-type protein, helical bundle domain M479_373 SM00382 ATPases associated with a variety of cellular activities M479_3730 SM00382 ATPases associated with a variety of cellular activities M479_3733 SM01321 M479_3733 M479_3738 SM00382 ATPases associated with a variety of cellular activities M479_3739 SM00382 ATPases associated with a variety of cellular activities M479_374 SM00382 ATPases associated with a variety of cellular activities M479_3750 SM00382 ATPases associated with a variety of cellular activities M479_376 SM00344 helix_turn_helix ASNC type M479_3769 SM01004 Delta-aminolevulinic acid dehydratase M479_377 SM00843 M479_377 M479_3770 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. M479_3770 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. M479_3789 SM00382 ATPases associated with a variety of cellular activities M479_3795 SM01321 M479_3795 M479_380 SM00382 ATPases associated with a variety of cellular activities M479_3804 SM00116 Domain in cystathionine beta-synthase and other proteins. M479_3804 SM01091 Transporter associated domain M479_3822 SM00387 Histidine kinase-like ATPases M479_3822 SM00388 His Kinase A (phosphoacceptor) domain M479_3823 SM00448 cheY-homologous receiver domain M479_3823 SM00862 Transcriptional regulatory protein, C terminal M479_3826 SM01103 M479_3826 M479_3828 SM00382 ATPases associated with a variety of cellular activities M479_3835 SM00316 Ribosomal protein S1-like RNA-binding domain M479_3835 SM00322 K homology RNA-binding domain M479_3839 SM01387 M479_3839 M479_3844 SM00859 Semialdehyde dehydrogenase, NAD binding domain M479_3850 SM00382 ATPases associated with a variety of cellular activities M479_3869 SM00155 Phospholipase D. Active site motifs. M479_3870 SM00881 CoA binding domain M479_3871 SM01144 M479_3871 M479_3873 SM00967 RNA 2'-O ribose methyltransferase substrate binding M479_3876 SM00347 helix_turn_helix multiple antibiotic resistance protein M479_388 SM00870 M479_388 M479_3884 SM00062 Bacterial periplasmic substrate-binding proteins M479_3887 SM00382 ATPases associated with a variety of cellular activities M479_3889 SM00382 ATPases associated with a variety of cellular activities M479_3895 SM01007 Class II Aldolase and Adducin N-terminal domain M479_3901 SM00710 Parallel beta-helix repeats M479_3901 SM00912 haemagglutination activity domain M479_3904 SM01321 M479_3904 M479_3911 SM00900 M479_3911 M479_3921 SM00089 Repeats in polycystic kidney disease 1 (PKD1) and other proteins M479_3926 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase M479_3938 SM00448 cheY-homologous receiver domain M479_3938 SM00862 Transcriptional regulatory protein, C terminal M479_3939 SM00091 PAS domain M479_3939 SM00387 Histidine kinase-like ATPases M479_3939 SM00388 His Kinase A (phosphoacceptor) domain M479_394 SM00316 Ribosomal protein S1-like RNA-binding domain M479_3943 SM00642 Alpha-amylase domain M479_3951 SM01323 M479_3951 M479_3954 SM01321 M479_3954 M479_396 SM00411 bacterial (prokaryotic) histone like domain M479_3963 SM01321 M479_3963 M479_3964 SM00861 Transketolase, pyrimidine binding domain M479_3967 SM00981 M479_3967 M479_397 SM00849 Metallo-beta-lactamase superfamily M479_398 SM00382 ATPases associated with a variety of cellular activities M479_3984 SM00382 ATPases associated with a variety of cellular activities M479_3984 SM00994 ClpX C4-type zinc finger M479_3984 SM01086 C-terminal, D2-small domain, of ClpB protein M479_3985 SM00382 ATPases associated with a variety of cellular activities M479_3985 SM00464 Found in ATP-dependent protease La (LON) M479_3986 SM00411 bacterial (prokaryotic) histone like domain M479_3988 SM01321 M479_3988 M479_3996 SM00344 helix_turn_helix ASNC type M479_3997 SM00382 ATPases associated with a variety of cellular activities M479_3998 SM00382 ATPases associated with a variety of cellular activities M479_3999 SM00938 Nitrogen regulatory protein P-II M479_400 SM01150 M479_400 M479_401 SM00357 Cold shock protein domain M479_4017 SM00382 ATPases associated with a variety of cellular activities M479_4019 SM00493 M479_4019 M479_4020 SM00387 Histidine kinase-like ATPases M479_4054 SM00422 helix_turn_helix, mercury resistance M479_4056 SM00244 prohibitin homologues M479_4058 SM00822 M479_4058 M479_4060 SM00382 ATPases associated with a variety of cellular activities M479_4063 SM01001 AIR carboxylase M479_4066 SM00840 M479_4066 M479_4068 SM01321 M479_4068 M479_4078 SM00563 Phosphate acyltransferases M479_4080 SM00195 Dual specificity phosphatase, catalytic domain M479_4080 SM00404 Protein tyrosine phosphatase, catalytic domain motif M479_409 SM01321 M479_409 M479_4092 SM01217 M479_4092 M479_4098 SM00869 Autotransporter beta-domain M479_4108 SM00382 ATPases associated with a variety of cellular activities M479_4110 SM00470 ParB-like nuclease domain M479_4118 SM00382 ATPases associated with a variety of cellular activities M479_4119 SM00470 ParB-like nuclease domain M479_412 SM00849 Metallo-beta-lactamase superfamily M479_4123 SM00857 Resolvase, N terminal domain M479_4127 SM00155 Phospholipase D. Active site motifs. M479_4133 SM00945 ProQ/FINO family M479_4169 SM00342 helix_turn_helix, arabinose operon control protein M479_4178 SM00481 DNA polymerase alpha chain like domain M479_4184 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs M479_4184 SM00475 5'-3' exonuclease M479_4188 SM00244 prohibitin homologues M479_4197 SM00062 Bacterial periplasmic substrate-binding proteins M479_4206 SM01321 M479_4206 M479_421 SM00981 M479_421 M479_4210 SM01321 M479_4210 M479_4216 SM00487 DEAD-like helicases superfamily M479_4216 SM00490 helicase superfamily c-terminal domain M479_4217 SM00470 ParB-like nuclease domain M479_4218 SM00470 ParB-like nuclease domain M479_4219 SM00382 ATPases associated with a variety of cellular activities M479_422 SM00382 ATPases associated with a variety of cellular activities M479_4228 SM00635 Bacterial Ig-like domain 2 M479_4234 SM00635 Bacterial Ig-like domain 2 M479_4240 SM00232 JAB/MPN domain M479_4256 SM00382 ATPases associated with a variety of cellular activities M479_4259 SM00194 Protein tyrosine phosphatase, catalytic domain M479_4259 SM00404 Protein tyrosine phosphatase, catalytic domain motif M479_426 SM01321 M479_426 M479_4262 SM00220 Serine/Threonine protein kinases, catalytic domain M479_4281 SM00857 Resolvase, N terminal domain M479_4295 SM00470 ParB-like nuclease domain M479_4307 SM00364 Leucine-rich repeats, bacterial type M479_432 SM00062 Bacterial periplasmic substrate-binding proteins M479_4323 SM00382 ATPases associated with a variety of cellular activities M479_433 SM01211 M479_433 M479_4332 SM00342 helix_turn_helix, arabinose operon control protein M479_437 SM01321 M479_437 M479_438 SM00387 Histidine kinase-like ATPases M479_438 SM00388 His Kinase A (phosphoacceptor) domain M479_44 SM00382 ATPases associated with a variety of cellular activities M479_440 SM00382 ATPases associated with a variety of cellular activities M479_440 SM00448 cheY-homologous receiver domain M479_442 SM00938 Nitrogen regulatory protein P-II M479_444 SM00382 ATPases associated with a variety of cellular activities M479_459 SM00271 DnaJ molecular chaperone homology domain M479_467 SM00869 Autotransporter beta-domain M479_468 SM00247 Beta/gamma crystallins M479_469 SM00562 M479_469 M479_47 SM00062 Bacterial periplasmic substrate-binding proteins M479_471 SM00028 Tetratricopeptide repeats M479_472 SM00530 Helix-turn-helix XRE-family like proteins M479_476 SM00564 beta-propeller repeat M479_481 SM00116 Domain in cystathionine beta-synthase and other proteins. M479_481 SM01240 M479_481 M479_483 SM01321 M479_483 M479_49 SM00116 Domain in cystathionine beta-synthase and other proteins. M479_49 SM01091 Transporter associated domain M479_496 SM00046 Diacylglycerol kinase catalytic domain (presumed) M479_499 SM00448 cheY-homologous receiver domain M479_499 SM00862 Transcriptional regulatory protein, C terminal M479_500 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain M479_500 SM00387 Histidine kinase-like ATPases M479_500 SM00388 His Kinase A (phosphoacceptor) domain M479_506 SM00382 ATPases associated with a variety of cellular activities M479_507 SM00345 helix_turn_helix gluconate operon transcriptional repressor M479_513 SM00924 MgtE intracellular N domain M479_518 SM00382 ATPases associated with a variety of cellular activities M479_52 SM00729 Elongator protein 3, MiaB family, Radical SAM M479_525 SM01321 M479_525 M479_534 SM01130 M479_534 M479_536 SM01321 M479_536 M479_548 SM00382 ATPases associated with a variety of cellular activities M479_555 SM00421 helix_turn_helix, Lux Regulon M479_555 SM00448 cheY-homologous receiver domain M479_558 SM00926 Molybdopterin oxidoreductase Fe4S4 domain M479_562 SM00919 Malic enzyme, NAD binding domain M479_562 SM01274 M479_562 M479_568 SM00869 Autotransporter beta-domain M479_573 SM01130 M479_573 M479_575 SM00364 Leucine-rich repeats, bacterial type M479_575 SM00369 Leucine-rich repeats, typical (most populated) subfamily M479_583 SM00382 ATPases associated with a variety of cellular activities M479_586 SM00448 cheY-homologous receiver domain M479_586 SM00862 Transcriptional regulatory protein, C terminal M479_587 SM00387 Histidine kinase-like ATPases M479_587 SM00388 His Kinase A (phosphoacceptor) domain M479_588 SM00327 von Willebrand factor (vWF) type A domain M479_594 SM00450 Rhodanese Homology Domain M479_595 SM00382 ATPases associated with a variety of cellular activities M479_597 SM00448 cheY-homologous receiver domain M479_597 SM00862 Transcriptional regulatory protein, C terminal M479_598 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain M479_598 SM00387 Histidine kinase-like ATPases M479_598 SM00388 His Kinase A (phosphoacceptor) domain M479_600 SM01321 M479_600 M479_606 SM00771 ZipA, C-terminal domain (FtsZ-binding) M479_607 SM00278 Helix-hairpin-helix DNA-binding motif class 1 M479_607 SM00292 breast cancer carboxy-terminal domain M479_607 SM00532 Ligase N family M479_611 SM01321 M479_611 M479_636 SM00926 Molybdopterin oxidoreductase Fe4S4 domain M479_640 SM00382 ATPases associated with a variety of cellular activities M479_644 SM00421 helix_turn_helix, Lux Regulon M479_653 SM00382 ATPases associated with a variety of cellular activities M479_653 SM01086 C-terminal, D2-small domain, of ClpB protein M479_667 SM00382 ATPases associated with a variety of cellular activities M479_68 SM01081 Putative carbohydrate binding domain M479_682 SM00382 ATPases associated with a variety of cellular activities M479_696 SM00855 Phosphoglycerate mutase family M479_697 SM00463 Small MutS-related domain M479_705 SM00825 Beta-ketoacyl synthase M479_710 SM00342 helix_turn_helix, arabinose operon control protein M479_712 SM00859 Semialdehyde dehydrogenase, NAD binding domain M479_721 SM00062 Bacterial periplasmic substrate-binding proteins M479_724 SM00382 ATPases associated with a variety of cellular activities M479_726 SM00052 Putative diguanylate phosphodiesterase M479_733 SM00354 helix_turn _helix lactose operon repressor M479_740 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. M479_747 SM00928 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region M479_748 SM00926 Molybdopterin oxidoreductase Fe4S4 domain M479_748 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region M479_761 SM00354 helix_turn _helix lactose operon repressor M479_773 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain M479_778 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) M479_778 SM00091 PAS domain M479_778 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). M479_779 SM00382 ATPases associated with a variety of cellular activities M479_78 SM00382 ATPases associated with a variety of cellular activities M479_781 SM00062 Bacterial periplasmic substrate-binding proteins M479_781 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. M479_791 SM00829 Enoylreductase M479_793 SM00382 ATPases associated with a variety of cellular activities M479_794 SM00382 ATPases associated with a variety of cellular activities M479_796 SM00354 helix_turn _helix lactose operon repressor M479_798 SM01329 M479_798 M479_803 SM00912 haemagglutination activity domain M479_813 SM00382 ATPases associated with a variety of cellular activities M479_815 SM00354 helix_turn _helix lactose operon repressor M479_836 SM00421 helix_turn_helix, Lux Regulon M479_839 SM00450 Rhodanese Homology Domain M479_841 SM00421 helix_turn_helix, Lux Regulon M479_848 SM00316 Ribosomal protein S1-like RNA-binding domain M479_849 SM00363 S4 RNA-binding domain M479_85 SM00778 Zinc-binding domain of primase-helicase M479_855 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. M479_856 SM00822 M479_856 M479_858 SM00825 Beta-ketoacyl synthase M479_859 SM01321 M479_859 M479_866 SM01321 M479_866 M479_879 SM00487 DEAD-like helicases superfamily M479_879 SM00490 helicase superfamily c-terminal domain M479_879 SM00982 M479_879 M479_879 SM01058 CarD-like/TRCF domain M479_881 SM00382 ATPases associated with a variety of cellular activities M479_886 SM00558 A domain family that is part of the cupin metalloenzyme superfamily. M479_887 SM00387 Histidine kinase-like ATPases M479_887 SM00388 His Kinase A (phosphoacceptor) domain M479_888 SM00448 cheY-homologous receiver domain M479_888 SM00862 Transcriptional regulatory protein, C terminal M479_895 SM01329 M479_895 M479_896 SM00354 helix_turn _helix lactose operon repressor M479_898 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) M479_898 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). M479_905 SM00344 helix_turn_helix ASNC type M479_908 SM00829 Enoylreductase M479_909 SM01038 Beta galactosidase small chain M479_910 SM00357 Cold shock protein domain M479_913 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). M479_913 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain M479_913 SM00319 Homologues of the ligand binding domain of Tar M479_916 SM00831 Cation transporter/ATPase, N-terminus M479_92 SM01321 M479_92 M479_921 SM00073 Histidine Phosphotransfer domain M479_921 SM00260 Two component signalling adaptor domain M479_921 SM00387 Histidine kinase-like ATPases M479_921 SM01231 M479_921 M479_922 SM00260 Two component signalling adaptor domain M479_927 SM00869 Autotransporter beta-domain M479_930 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). M479_930 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain M479_930 SM00319 Homologues of the ligand binding domain of Tar M479_931 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). M479_931 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain M479_931 SM00319 Homologues of the ligand binding domain of Tar M479_932 SM00138 Methyltransferase, chemotaxis proteins M479_933 SM00448 cheY-homologous receiver domain M479_934 SM00448 cheY-homologous receiver domain M479_936 SM00644 M479_936 M479_941 SM01005 Alanine racemase, C-terminal domain M479_947 SM00382 ATPases associated with a variety of cellular activities M479_949 SM01022 M479_949 M479_951 SM00972 Spore Coat Protein U domain M479_954 SM00972 Spore Coat Protein U domain M479_955 SM00972 Spore Coat Protein U domain M479_956 SM00972 Spore Coat Protein U domain M479_960 SM00945 ProQ/FINO family M479_961 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. M479_961 SM00245 tail specific protease M479_971 SM00346 helix_turn_helix isocitrate lyase regulation M479_972 SM00644 M479_972 M479_977 SM00382 ATPases associated with a variety of cellular activities M479_990 SM00382 ATPases associated with a variety of cellular activities M479_996 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain