M480_1 SM01002 Alanine dehydrogenase/PNT, C-terminal domain M480_1 SM01003 Alanine dehydrogenase/PNT, N-terminal domain M480_100 SM00382 ATPases associated with a variety of cellular activities M480_1013 SM01321 M480_1013 M480_1014 SM00881 CoA binding domain M480_1017 SM00861 Transketolase, pyrimidine binding domain M480_1030 SM01321 M480_1030 M480_1037 SM00778 Zinc-binding domain of primase-helicase M480_1044 SM00382 ATPases associated with a variety of cellular activities M480_1054 SM01081 Putative carbohydrate binding domain M480_1070 SM00729 Elongator protein 3, MiaB family, Radical SAM M480_1073 SM00116 Domain in cystathionine beta-synthase and other proteins. M480_1073 SM01091 Transporter associated domain M480_1075 SM00062 Bacterial periplasmic substrate-binding proteins M480_1078 SM00382 ATPases associated with a variety of cellular activities M480_1089 SM00936 Penicillin-binding protein 5, C-terminal domain M480_1092 SM00729 Elongator protein 3, MiaB family, Radical SAM M480_1095 SM00357 Cold shock protein domain M480_1097 SM00421 helix_turn_helix, Lux Regulon M480_11 SM00867 YceI-like domain M480_1102 SM00382 ATPases associated with a variety of cellular activities M480_1109 SM00382 ATPases associated with a variety of cellular activities M480_1119 SM01359 M480_1119 M480_1119 SM01360 M480_1119 M480_1128 SM00869 Autotransporter beta-domain M480_1134 SM01217 M480_1134 M480_1144 SM00195 Dual specificity phosphatase, catalytic domain M480_1144 SM00404 Protein tyrosine phosphatase, catalytic domain motif M480_1146 SM00563 Phosphate acyltransferases M480_1156 SM01321 M480_1156 M480_1158 SM00840 M480_1158 M480_1161 SM01001 AIR carboxylase M480_1164 SM00382 ATPases associated with a variety of cellular activities M480_1166 SM00822 M480_1166 M480_1168 SM00244 prohibitin homologues M480_1170 SM00422 helix_turn_helix, mercury resistance M480_119 SM00382 ATPases associated with a variety of cellular activities M480_1204 SM00387 Histidine kinase-like ATPases M480_1205 SM00493 M480_1205 M480_1207 SM00382 ATPases associated with a variety of cellular activities M480_1225 SM00938 Nitrogen regulatory protein P-II M480_1226 SM00382 ATPases associated with a variety of cellular activities M480_1227 SM00382 ATPases associated with a variety of cellular activities M480_1228 SM00344 helix_turn_helix ASNC type M480_123 SM00411 bacterial (prokaryotic) histone like domain M480_1236 SM01321 M480_1236 M480_1238 SM00411 bacterial (prokaryotic) histone like domain M480_1239 SM00382 ATPases associated with a variety of cellular activities M480_1239 SM00464 Found in ATP-dependent protease La (LON) M480_124 SM00873 B3/4 domain M480_124 SM00874 tRNA synthetase B5 domain M480_124 SM00896 Ferredoxin-fold anticodon binding domain M480_1240 SM00382 ATPases associated with a variety of cellular activities M480_1240 SM00994 ClpX C4-type zinc finger M480_1240 SM01086 C-terminal, D2-small domain, of ClpB protein M480_1257 SM00981 M480_1257 M480_1260 SM00861 Transketolase, pyrimidine binding domain M480_1261 SM01321 M480_1261 M480_1270 SM01321 M480_1270 M480_1273 SM01323 M480_1273 M480_1281 SM00642 Alpha-amylase domain M480_1285 SM00091 PAS domain M480_1285 SM00387 Histidine kinase-like ATPases M480_1285 SM00388 His Kinase A (phosphoacceptor) domain M480_1286 SM00448 cheY-homologous receiver domain M480_1286 SM00862 Transcriptional regulatory protein, C terminal M480_129 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain M480_1298 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase M480_1303 SM00089 Repeats in polycystic kidney disease 1 (PKD1) and other proteins M480_1313 SM00900 M480_1313 M480_1320 SM01321 M480_1320 M480_1323 SM00710 Parallel beta-helix repeats M480_1323 SM00912 haemagglutination activity domain M480_1329 SM01007 Class II Aldolase and Adducin N-terminal domain M480_1335 SM00382 ATPases associated with a variety of cellular activities M480_1337 SM00382 ATPases associated with a variety of cellular activities M480_1340 SM00062 Bacterial periplasmic substrate-binding proteins M480_1348 SM00347 helix_turn_helix multiple antibiotic resistance protein M480_135 SM00382 ATPases associated with a variety of cellular activities M480_1351 SM00967 RNA 2'-O ribose methyltransferase substrate binding M480_1353 SM01144 M480_1353 M480_1354 SM00881 CoA binding domain M480_1355 SM00155 Phospholipase D. Active site motifs. M480_1373 SM00382 ATPases associated with a variety of cellular activities M480_1379 SM00859 Semialdehyde dehydrogenase, NAD binding domain M480_1384 SM01387 M480_1384 M480_1388 SM00316 Ribosomal protein S1-like RNA-binding domain M480_1388 SM00322 K homology RNA-binding domain M480_1395 SM00382 ATPases associated with a variety of cellular activities M480_1397 SM01103 M480_1397 M480_14 SM00020 Trypsin-like serine protease M480_1400 SM00448 cheY-homologous receiver domain M480_1400 SM00862 Transcriptional regulatory protein, C terminal M480_1401 SM00387 Histidine kinase-like ATPases M480_1401 SM00388 His Kinase A (phosphoacceptor) domain M480_1419 SM00116 Domain in cystathionine beta-synthase and other proteins. M480_1419 SM01091 Transporter associated domain M480_1428 SM01321 M480_1428 M480_1434 SM00382 ATPases associated with a variety of cellular activities M480_1453 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. M480_1453 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. M480_1454 SM01004 Delta-aminolevulinic acid dehydratase M480_1473 SM00382 ATPases associated with a variety of cellular activities M480_148 SM00382 ATPases associated with a variety of cellular activities M480_1484 SM00382 ATPases associated with a variety of cellular activities M480_1485 SM00382 ATPases associated with a variety of cellular activities M480_1490 SM01321 M480_1490 M480_1493 SM00382 ATPases associated with a variety of cellular activities M480_1494 SM00382 ATPases associated with a variety of cellular activities M480_1494 SM00962 SRP54-type protein, GTPase domain M480_1494 SM00963 SRP54-type protein, helical bundle domain M480_15 SM00530 Helix-turn-helix XRE-family like proteins M480_1513 SM00341 Helicase and RNase D C-terminal M480_1513 SM00487 DEAD-like helicases superfamily M480_1513 SM00490 helicase superfamily c-terminal domain M480_1513 SM00956 M480_1513 M480_1527 SM01219 M480_1527 M480_153 SM00644 M480_153 M480_1533 SM01321 M480_1533 M480_154 SM00346 helix_turn_helix isocitrate lyase regulation M480_1548 SM00984 UDP binding domain M480_1552 SM00357 Cold shock protein domain M480_1552 SM00382 ATPases associated with a variety of cellular activities M480_1552 SM00959 Rho termination factor, N-terminal domain M480_1554 SM00487 DEAD-like helicases superfamily M480_1554 SM00490 helicase superfamily c-terminal domain M480_1565 SM00507 HNH nucleases M480_1581 SM00382 ATPases associated with a variety of cellular activities M480_1586 SM00382 ATPases associated with a variety of cellular activities M480_1595 SM00798 AICARFT/IMPCHase bienzyme M480_1595 SM00851 MGS-like domain M480_1596 SM01209 M480_1596 M480_1596 SM01210 M480_1596 M480_1598 SM00411 bacterial (prokaryotic) histone like domain M480_1612 SM00876 Biotin and Thiamin Synthesis associated domain M480_1613 SM00663 RNA polymerase I subunit A N-terminus M480_1619 SM00649 Ribosomal protein L11/L12 M480_1620 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. M480_1620 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. M480_164 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. M480_164 SM00245 tail specific protease M480_1642 SM00382 ATPases associated with a variety of cellular activities M480_1644 SM00530 Helix-turn-helix XRE-family like proteins M480_165 SM00945 ProQ/FINO family M480_1651 SM00342 helix_turn_helix, arabinose operon control protein M480_1653 SM00382 ATPases associated with a variety of cellular activities M480_1671 SM00487 DEAD-like helicases superfamily M480_1671 SM00490 helicase superfamily c-terminal domain M480_1673 SM00354 helix_turn _helix lactose operon repressor M480_1676 SM00382 ATPases associated with a variety of cellular activities M480_1676 SM01086 C-terminal, D2-small domain, of ClpB protein M480_1682 SM00382 ATPases associated with a variety of cellular activities M480_1683 SM01321 M480_1683 M480_169 SM00972 Spore Coat Protein U domain M480_17 SM00382 ATPases associated with a variety of cellular activities M480_17 SM00487 DEAD-like helicases superfamily M480_17 SM00490 helicase superfamily c-terminal domain M480_17 SM00847 Helicase associated domain (HA2) Add an annotation M480_170 SM00972 Spore Coat Protein U domain M480_1704 SM00448 cheY-homologous receiver domain M480_1704 SM00862 Transcriptional regulatory protein, C terminal M480_1705 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain M480_1705 SM00387 Histidine kinase-like ATPases M480_1705 SM00388 His Kinase A (phosphoacceptor) domain M480_1706 SM00342 helix_turn_helix, arabinose operon control protein M480_1708 SM00971 Serine acetyltransferase, N-terminal M480_171 SM00972 Spore Coat Protein U domain M480_1712 SM00450 Rhodanese Homology Domain M480_1717 SM00829 Enoylreductase M480_1724 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain M480_1724 SM01232 M480_1724 M480_1736 SM00532 Ligase N family M480_1737 SM00072 Guanylate kinase homologues. M480_1738 SM01409 M480_1738 M480_1739 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. M480_1739 SM00954 Region found in RelA / SpoT proteins M480_174 SM00972 Spore Coat Protein U domain M480_1741 SM00487 DEAD-like helicases superfamily M480_1741 SM00490 helicase superfamily c-terminal domain M480_1747 SM00382 ATPases associated with a variety of cellular activities M480_1752 SM01230 M480_1752 M480_1753 SM00091 PAS domain M480_1753 SM00387 Histidine kinase-like ATPases M480_1753 SM00388 His Kinase A (phosphoacceptor) domain M480_1754 SM00382 ATPases associated with a variety of cellular activities M480_1754 SM00448 cheY-homologous receiver domain M480_1755 SM00729 Elongator protein 3, MiaB family, Radical SAM M480_1758 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs M480_1758 SM00474 3'-5' exonuclease M480_1758 SM00475 5'-3' exonuclease M480_1758 SM00482 DNA polymerase A domain M480_176 SM01022 M480_176 M480_1769 SM00345 helix_turn_helix gluconate operon transcriptional repressor M480_1769 SM00895 M480_1769 M480_1776 SM00382 ATPases associated with a variety of cellular activities M480_1777 SM00327 von Willebrand factor (vWF) type A domain M480_1779 SM00344 helix_turn_helix ASNC type M480_178 SM00382 ATPases associated with a variety of cellular activities M480_1781 SM01228 M480_1781 M480_1790 SM00382 ATPases associated with a variety of cellular activities M480_1797 SM00382 ATPases associated with a variety of cellular activities M480_1800 SM00062 Bacterial periplasmic substrate-binding proteins M480_1810 SM01234 M480_1810 M480_1814 SM00382 ATPases associated with a variety of cellular activities M480_1814 SM00760 Bacterial dnaA protein helix-turn-helix domain M480_1815 SM00480 DNA polymerase III beta subunit M480_1817 SM00387 Histidine kinase-like ATPases M480_1817 SM00433 TopoisomeraseII M480_1831 SM00642 Alpha-amylase domain M480_184 SM01005 Alanine racemase, C-terminal domain M480_1849 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). M480_1849 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain M480_1849 SM01358 M480_1849 M480_1852 SM00926 Molybdopterin oxidoreductase Fe4S4 domain M480_1867 SM00420 helix_turn_helix, Deoxyribose operon repressor M480_1867 SM01134 M480_1867 M480_1869 SM00450 Rhodanese Homology Domain M480_1870 SM00421 helix_turn_helix, Lux Regulon M480_1879 SM00899 M480_1879 M480_1880 SM00316 Ribosomal protein S1-like RNA-binding domain M480_1880 SM00732 Likely ribonuclease with RNase H fold. M480_1882 SM00448 cheY-homologous receiver domain M480_1882 SM00862 Transcriptional regulatory protein, C terminal M480_1883 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain M480_1883 SM00387 Histidine kinase-like ATPases M480_1883 SM00388 His Kinase A (phosphoacceptor) domain M480_1886 SM00363 S4 RNA-binding domain M480_189 SM00644 M480_189 M480_191 SM00448 cheY-homologous receiver domain M480_1911 SM00354 helix_turn _helix lactose operon repressor M480_1918 SM00100 Cyclic nucleotide-monophosphate binding domain M480_1918 SM00419 helix_turn_helix, cAMP Regulatory protein M480_192 SM00448 cheY-homologous receiver domain M480_1925 SM00062 Bacterial periplasmic substrate-binding proteins M480_1926 SM00382 ATPases associated with a variety of cellular activities M480_193 SM00138 Methyltransferase, chemotaxis proteins M480_1932 SM00382 ATPases associated with a variety of cellular activities M480_194 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). M480_194 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain M480_194 SM00319 Homologues of the ligand binding domain of Tar M480_1945 SM00838 Elongation factor G C-terminus M480_1945 SM00889 Elongation factor G, domain IV M480_1947 SM01321 M480_1947 M480_195 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). M480_195 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain M480_195 SM00319 Homologues of the ligand binding domain of Tar M480_1950 SM01403 M480_1950 M480_1954 SM01382 M480_1954 M480_1954 SM01383 M480_1954 M480_1957 SM00322 K homology RNA-binding domain M480_1961 SM01374 M480_1961 M480_1962 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. M480_1975 SM00363 S4 RNA-binding domain M480_1975 SM01390 M480_1975 M480_1976 SM00662 RNA polymerases D M480_1978 SM00422 helix_turn_helix, mercury resistance M480_198 SM00869 Autotransporter beta-domain M480_1999 SM00382 ATPases associated with a variety of cellular activities M480_2006 SM00421 helix_turn_helix, Lux Regulon M480_2006 SM00448 cheY-homologous receiver domain M480_2007 SM00387 Histidine kinase-like ATPases M480_2007 SM00388 His Kinase A (phosphoacceptor) domain M480_2007 SM00448 cheY-homologous receiver domain M480_2011 SM00342 helix_turn_helix, arabinose operon control protein M480_2019 SM00382 ATPases associated with a variety of cellular activities M480_203 SM00260 Two component signalling adaptor domain M480_2032 SM00382 ATPases associated with a variety of cellular activities M480_204 SM00073 Histidine Phosphotransfer domain M480_204 SM00260 Two component signalling adaptor domain M480_204 SM00387 Histidine kinase-like ATPases M480_204 SM01231 M480_204 M480_2040 SM00729 Elongator protein 3, MiaB family, Radical SAM M480_2059 SM00060 Fibronectin type 3 domain M480_2060 SM00869 Autotransporter beta-domain M480_2064 SM00563 Phosphate acyltransferases M480_2070 SM00829 Enoylreductase M480_2071 SM00382 ATPases associated with a variety of cellular activities M480_2072 SM01005 Alanine racemase, C-terminal domain M480_2079 SM01007 Class II Aldolase and Adducin N-terminal domain M480_2084 SM00342 helix_turn_helix, arabinose operon control protein M480_2085 SM00342 helix_turn_helix, arabinose operon control protein M480_2089 SM01276 M480_2089 M480_209 SM00831 Cation transporter/ATPase, N-terminus M480_2095 SM00926 Molybdopterin oxidoreductase Fe4S4 domain M480_2101 SM00883 Chaperonin 10 Kd subunit M480_2105 SM00841 Elongation factor P, C-terminal M480_2105 SM01185 M480_2105 M480_2115 SM00479 M480_2115 M480_212 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). M480_212 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain M480_212 SM00319 Homologues of the ligand binding domain of Tar M480_2121 SM00257 Lysin motif M480_2121 SM00646 M480_2121 M480_2122 SM00853 MutL C terminal dimerisation domain M480_2122 SM01340 M480_2122 M480_2126 SM00244 prohibitin homologues M480_2127 SM00244 prohibitin homologues M480_2129 SM00788 Adenylosuccinate synthetase M480_2131 SM00316 Ribosomal protein S1-like RNA-binding domain M480_2131 SM00357 Cold shock protein domain M480_2131 SM00955 M480_2131 M480_2132 SM00967 RNA 2'-O ribose methyltransferase substrate binding M480_2137 SM00382 ATPases associated with a variety of cellular activities M480_2139 SM00421 helix_turn_helix, Lux Regulon M480_2139 SM00448 cheY-homologous receiver domain M480_2140 SM00387 Histidine kinase-like ATPases M480_2144 SM00912 haemagglutination activity domain M480_215 SM00357 Cold shock protein domain M480_2150 SM00382 ATPases associated with a variety of cellular activities M480_2151 SM00382 ATPases associated with a variety of cellular activities M480_2153 SM00052 Putative diguanylate phosphodiesterase M480_2153 SM00267 diguanylate cyclase M480_216 SM01038 Beta galactosidase small chain M480_2162 SM00052 Putative diguanylate phosphodiesterase M480_2166 SM00869 Autotransporter beta-domain M480_217 SM00829 Enoylreductase M480_2177 SM00235 Zinc-dependent metalloprotease M480_2178 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase M480_2181 SM01321 M480_2181 M480_2184 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain M480_2184 SM00387 Histidine kinase-like ATPases M480_2184 SM00388 His Kinase A (phosphoacceptor) domain M480_2184 SM00448 cheY-homologous receiver domain M480_2185 SM00382 ATPases associated with a variety of cellular activities M480_219 SM00344 helix_turn_helix ASNC type M480_2191 SM00448 cheY-homologous receiver domain M480_2191 SM00862 Transcriptional regulatory protein, C terminal M480_2194 SM00354 helix_turn _helix lactose operon repressor M480_2202 SM00859 Semialdehyde dehydrogenase, NAD binding domain M480_2208 SM00634 Bacterial Ig-like domain (group 1) M480_2210 SM00642 Alpha-amylase domain M480_2211 SM00642 Alpha-amylase domain M480_2220 SM00316 Ribosomal protein S1-like RNA-binding domain M480_2220 SM00322 K homology RNA-binding domain M480_2221 SM00028 Tetratricopeptide repeats M480_2222 SM00487 DEAD-like helicases superfamily M480_2222 SM00490 helicase superfamily c-terminal domain M480_2224 SM00530 Helix-turn-helix XRE-family like proteins M480_2240 SM00382 ATPases associated with a variety of cellular activities M480_2243 SM00859 Semialdehyde dehydrogenase, NAD binding domain M480_2244 SM00849 Metallo-beta-lactamase superfamily M480_2245 SM00072 Guanylate kinase homologues. M480_2247 SM00382 ATPases associated with a variety of cellular activities M480_2248 SM00382 ATPases associated with a variety of cellular activities M480_2253 SM00345 helix_turn_helix gluconate operon transcriptional repressor M480_2253 SM00866 M480_2253 M480_2257 SM00382 ATPases associated with a variety of cellular activities M480_2258 SM00382 ATPases associated with a variety of cellular activities M480_226 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) M480_226 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). M480_2276 SM00382 ATPases associated with a variety of cellular activities M480_2278 SM00382 ATPases associated with a variety of cellular activities M480_228 SM00354 helix_turn _helix lactose operon repressor M480_229 SM01329 M480_229 M480_2293 SM00342 helix_turn_helix, arabinose operon control protein M480_2299 SM01133 M480_2299 M480_2303 SM00382 ATPases associated with a variety of cellular activities M480_2313 SM00267 diguanylate cyclase M480_2320 SM00749 bacterial OsmY and nodulation domain M480_2326 SM01133 M480_2326 M480_2327 SM00941 Pyrimidine nucleoside phosphorylase C-terminal domain M480_2332 SM00382 ATPases associated with a variety of cellular activities M480_2333 SM00530 Helix-turn-helix XRE-family like proteins M480_2336 SM00382 ATPases associated with a variety of cellular activities M480_2338 SM00267 diguanylate cyclase M480_2340 SM00831 Cation transporter/ATPase, N-terminus M480_2344 SM00342 helix_turn_helix, arabinose operon control protein M480_2344 SM00871 Bacterial transcription activator, effector binding domain M480_2345 SM00855 Phosphoglycerate mutase family M480_2348 SM00448 cheY-homologous receiver domain M480_2348 SM00862 Transcriptional regulatory protein, C terminal M480_2356 SM00852 Probable molybdopterin binding domain M480_236 SM00448 cheY-homologous receiver domain M480_236 SM00862 Transcriptional regulatory protein, C terminal M480_2361 SM00271 DnaJ molecular chaperone homology domain M480_2365 SM00904 Riboflavin kinase M480_237 SM00387 Histidine kinase-like ATPases M480_237 SM00388 His Kinase A (phosphoacceptor) domain M480_2371 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain M480_2372 SM00851 MGS-like domain M480_2372 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain M480_238 SM00558 A domain family that is part of the cupin metalloenzyme superfamily. M480_2380 SM00650 Ribosomal RNA adenine dimethylases M480_2384 SM00271 DnaJ molecular chaperone homology domain M480_2394 SM00382 ATPases associated with a variety of cellular activities M480_2394 SM01086 C-terminal, D2-small domain, of ClpB protein M480_2405 SM00487 DEAD-like helicases superfamily M480_2405 SM00490 helicase superfamily c-terminal domain M480_2406 SM00486 DNA polymerase type-B family M480_2408 SM00382 ATPases associated with a variety of cellular activities M480_2416 SM01329 M480_2416 M480_2417 SM00917 LeuA allosteric (dimerisation) domain M480_2424 SM01321 M480_2424 M480_2425 SM00354 helix_turn _helix lactose operon repressor M480_2426 SM01321 M480_2426 M480_243 SM00382 ATPases associated with a variety of cellular activities M480_2441 SM00842 Cell division protein FtsA M480_2442 SM00864 Tubulin/FtsZ family, GTPase domain M480_2442 SM00865 Tubulin/FtsZ family, C-terminal domain M480_2446 SM00957 SecA DEAD-like domain M480_2446 SM00958 SecA preprotein cross-linking domain M480_245 SM00487 DEAD-like helicases superfamily M480_245 SM00490 helicase superfamily c-terminal domain M480_245 SM00982 M480_245 M480_245 SM01058 CarD-like/TRCF domain M480_2451 SM01321 M480_2451 M480_2455 SM01240 M480_2455 M480_2460 SM00644 M480_2460 M480_2463 SM00345 helix_turn_helix gluconate operon transcriptional repressor M480_2463 SM00895 M480_2463 M480_2467 SM01321 M480_2467 M480_2476 SM00947 Carbonic anhydrase M480_2477 SM00382 ATPases associated with a variety of cellular activities M480_2490 SM00487 DEAD-like helicases superfamily M480_2490 SM00490 helicase superfamily c-terminal domain M480_2490 SM00847 Helicase associated domain (HA2) Add an annotation M480_2492 SM00382 ATPases associated with a variety of cellular activities M480_2501 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. M480_2502 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. M480_2503 SM00073 Histidine Phosphotransfer domain M480_2503 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain M480_2503 SM00387 Histidine kinase-like ATPases M480_2503 SM00388 His Kinase A (phosphoacceptor) domain M480_2503 SM00448 cheY-homologous receiver domain M480_2504 SM00954 Region found in RelA / SpoT proteins M480_2507 SM01192 M480_2507 M480_2507 SM01193 M480_2507 M480_2529 SM00257 Lysin motif M480_2531 SM00533 DNA-binding domain of DNA mismatch repair MUTS family M480_2531 SM00534 ATPase domain of DNA mismatch repair MUTS family M480_2533 SM00829 Enoylreductase M480_2536 SM01120 M480_2536 M480_2539 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor M480_2542 SM00062 Bacterial periplasmic substrate-binding proteins M480_2543 SM01235 M480_2543 M480_2554 SM00382 ATPases associated with a variety of cellular activities M480_2556 SM00420 helix_turn_helix, Deoxyribose operon repressor M480_2556 SM01134 M480_2556 M480_2557 SM01007 Class II Aldolase and Adducin N-terminal domain M480_2558 SM00926 Molybdopterin oxidoreductase Fe4S4 domain M480_2567 SM00382 ATPases associated with a variety of cellular activities M480_2570 SM00861 Transketolase, pyrimidine binding domain M480_2576 SM00382 ATPases associated with a variety of cellular activities M480_2578 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain M480_258 SM01321 M480_258 M480_2587 SM01091 Transporter associated domain M480_2589 SM00382 ATPases associated with a variety of cellular activities M480_2589 SM00962 SRP54-type protein, GTPase domain M480_2589 SM00963 SRP54-type protein, helical bundle domain M480_2597 SM00448 cheY-homologous receiver domain M480_2597 SM00850 LytTr DNA-binding domain M480_2600 SM00382 ATPases associated with a variety of cellular activities M480_2602 SM00830 Chorismate mutase type II M480_2603 SM00830 Chorismate mutase type II M480_2606 SM00363 S4 RNA-binding domain M480_2608 SM00382 ATPases associated with a variety of cellular activities M480_2608 SM01086 C-terminal, D2-small domain, of ClpB protein M480_2621 SM00346 helix_turn_helix isocitrate lyase regulation M480_2622 SM01018 B12 binding domain M480_2624 SM00912 haemagglutination activity domain M480_2633 SM00382 ATPases associated with a variety of cellular activities M480_265 SM01321 M480_265 M480_2650 SM00382 ATPases associated with a variety of cellular activities M480_2650 SM01086 C-terminal, D2-small domain, of ClpB protein M480_266 SM00825 Beta-ketoacyl synthase M480_2661 SM00860 SMI1 / KNR4 family M480_2664 SM00530 Helix-turn-helix XRE-family like proteins M480_2672 SM00342 helix_turn_helix, arabinose operon control protein M480_2675 SM01133 M480_2675 M480_2677 SM00062 Bacterial periplasmic substrate-binding proteins M480_268 SM00822 M480_268 M480_2680 SM00382 ATPases associated with a variety of cellular activities M480_2687 SM00382 ATPases associated with a variety of cellular activities M480_269 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. M480_2696 SM00357 Cold shock protein domain M480_2697 SM00357 Cold shock protein domain M480_2699 SM00849 Metallo-beta-lactamase superfamily M480_2703 SM00345 helix_turn_helix gluconate operon transcriptional repressor M480_2703 SM00895 M480_2703 M480_2711 SM00878 Biotin carboxylase C-terminal domain M480_2716 SM00829 Enoylreductase M480_2717 SM00052 Putative diguanylate phosphodiesterase M480_2717 SM00267 diguanylate cyclase M480_2722 SM00316 Ribosomal protein S1-like RNA-binding domain M480_2748 SM00642 Alpha-amylase domain M480_275 SM00363 S4 RNA-binding domain M480_2750 SM00354 helix_turn _helix lactose operon repressor M480_276 SM00316 Ribosomal protein S1-like RNA-binding domain M480_2760 SM00382 ATPases associated with a variety of cellular activities M480_2764 SM00116 Domain in cystathionine beta-synthase and other proteins. M480_2766 SM00382 ATPases associated with a variety of cellular activities M480_2773 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. M480_2775 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. M480_2785 SM00729 Elongator protein 3, MiaB family, Radical SAM M480_2786 SM00073 Histidine Phosphotransfer domain M480_2786 SM00091 PAS domain M480_2786 SM00387 Histidine kinase-like ATPases M480_2786 SM00388 His Kinase A (phosphoacceptor) domain M480_2786 SM00448 cheY-homologous receiver domain M480_2789 SM00749 bacterial OsmY and nodulation domain M480_2805 SM00345 helix_turn_helix gluconate operon transcriptional repressor M480_2805 SM00895 M480_2805 M480_2810 SM00858 M480_2810 M480_2812 SM01321 M480_2812 M480_2817 SM00869 Autotransporter beta-domain M480_2821 SM00220 Serine/Threonine protein kinases, catalytic domain M480_2823 SM00327 von Willebrand factor (vWF) type A domain M480_2824 SM00327 von Willebrand factor (vWF) type A domain M480_2826 SM00327 von Willebrand factor (vWF) type A domain M480_2828 SM00912 haemagglutination activity domain M480_283 SM00421 helix_turn_helix, Lux Regulon M480_2833 SM00869 Autotransporter beta-domain M480_2836 SM00382 ATPases associated with a variety of cellular activities M480_2838 SM00354 helix_turn _helix lactose operon repressor M480_2843 SM01217 M480_2843 M480_285 SM00450 Rhodanese Homology Domain M480_2858 SM00382 ATPases associated with a variety of cellular activities M480_2871 SM00400 zinc finger M480_2871 SM00493 M480_2871 M480_2871 SM00766 DNA primase DnaG DnaB-binding M480_2874 SM01207 M480_2874 M480_2875 SM00905 Dihydroneopterin aldolase M480_2877 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. M480_2878 SM00287 Bacterial SH3 domain homologues M480_2879 SM01118 M480_2879 M480_288 SM00421 helix_turn_helix, Lux Regulon M480_2895 SM00387 Histidine kinase-like ATPases M480_2895 SM00433 TopoisomeraseII M480_2898 SM00434 DNA Topoisomerase IV M480_2899 SM00563 Phosphate acyltransferases M480_29 SM00890 Domain of unknown function M480_2905 SM00342 helix_turn_helix, arabinose operon control protein M480_2924 SM01321 M480_2924 M480_2939 SM00382 ATPases associated with a variety of cellular activities M480_2944 SM00382 ATPases associated with a variety of cellular activities M480_2948 SM00858 M480_2948 M480_2962 SM00862 Transcriptional regulatory protein, C terminal M480_2986 SM01006 Siderophore biosynthesis protein domain M480_2993 SM00421 helix_turn_helix, Lux Regulon M480_3006 SM00382 ATPases associated with a variety of cellular activities M480_3006 SM01086 C-terminal, D2-small domain, of ClpB protein M480_3017 SM00382 ATPases associated with a variety of cellular activities M480_3023 SM00478 endonuclease III M480_3023 SM00525 M480_3023 M480_3030 SM00729 Elongator protein 3, MiaB family, Radical SAM M480_3032 SM01152 M480_3032 M480_3036 SM00382 ATPases associated with a variety of cellular activities M480_3039 SM00732 Likely ribonuclease with RNase H fold. M480_3044 SM00731 SprT homologues. M480_3050 SM00861 Transketolase, pyrimidine binding domain M480_3051 SM01321 M480_3051 M480_3052 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain M480_3061 SM01321 M480_3061 M480_3065 SM01011 Aminopeptidase P, N-terminal domain M480_3079 SM00448 cheY-homologous receiver domain M480_3079 SM00862 Transcriptional regulatory protein, C terminal M480_3080 SM00387 Histidine kinase-like ATPases M480_3080 SM00388 His Kinase A (phosphoacceptor) domain M480_3086 SM00937 M480_3086 M480_309 SM00354 helix_turn _helix lactose operon repressor M480_3092 SM00530 Helix-turn-helix XRE-family like proteins M480_3094 SM00530 Helix-turn-helix XRE-family like proteins M480_3095 SM00778 Zinc-binding domain of primase-helicase M480_3095 SM00885 D5 N terminal like M480_311 SM00382 ATPases associated with a variety of cellular activities M480_3116 SM00382 ATPases associated with a variety of cellular activities M480_3117 SM00382 ATPases associated with a variety of cellular activities M480_3126 SM00354 helix_turn _helix lactose operon repressor M480_3129 SM00354 helix_turn _helix lactose operon repressor M480_3145 SM00420 helix_turn_helix, Deoxyribose operon repressor M480_3145 SM01134 M480_3145 M480_3149 SM00382 ATPases associated with a variety of cellular activities M480_3151 SM00869 Autotransporter beta-domain M480_3154 SM00947 Carbonic anhydrase M480_3158 SM00382 ATPases associated with a variety of cellular activities M480_3170 SM00862 Transcriptional regulatory protein, C terminal M480_3175 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). M480_3175 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain M480_3175 SM00319 Homologues of the ligand binding domain of Tar M480_3176 SM00849 Metallo-beta-lactamase superfamily M480_3180 SM00354 helix_turn _helix lactose operon repressor M480_3183 SM00563 Phosphate acyltransferases M480_3188 SM00927 DNA mismatch repair enzyme MutH M480_3190 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. M480_3207 SM00646 M480_3207 M480_321 SM00912 haemagglutination activity domain M480_3211 SM00925 MltA specific insert domain M480_3219 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs M480_3219 SM00475 5'-3' exonuclease M480_3223 SM01321 M480_3223 M480_3229 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. M480_3238 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. M480_3240 SM00935 Outer membrane protein (OmpH-like) M480_3246 SM00481 DNA polymerase alpha chain like domain M480_3249 SM00977 TilS substrate C-terminal domain M480_3253 SM01322 M480_3253 M480_326 SM01329 M480_326 M480_3261 SM00382 ATPases associated with a variety of cellular activities M480_3261 SM00930 M480_3261 M480_3271 SM00257 Lysin motif M480_3272 SM00849 Metallo-beta-lactamase superfamily M480_3275 SM00479 M480_3275 M480_328 SM00354 helix_turn _helix lactose operon repressor M480_3281 SM00382 ATPases associated with a variety of cellular activities M480_3290 SM00357 Cold shock protein domain M480_3294 SM00382 ATPases associated with a variety of cellular activities M480_3295 SM00382 ATPases associated with a variety of cellular activities M480_33 SM00422 helix_turn_helix, mercury resistance M480_330 SM00382 ATPases associated with a variety of cellular activities M480_3300 SM00988 UreE urease accessory protein, N-terminal domain M480_331 SM00382 ATPases associated with a variety of cellular activities M480_3313 SM00342 helix_turn_helix, arabinose operon control protein M480_3322 SM00448 cheY-homologous receiver domain M480_3322 SM00862 Transcriptional regulatory protein, C terminal M480_3323 SM00387 Histidine kinase-like ATPases M480_3323 SM00388 His Kinase A (phosphoacceptor) domain M480_333 SM00829 Enoylreductase M480_3334 SM00796 Allophanate hydrolase subunit 1 M480_3335 SM00797 Allophanate hydrolase subunit 2 M480_3340 SM00986 Uracil DNA glycosylase superfamily M480_3340 SM00987 UreE urease accessory protein, C-terminal domain M480_3344 SM00248 ankyrin repeats M480_3346 SM00487 DEAD-like helicases superfamily M480_3346 SM00490 helicase superfamily c-terminal domain M480_3356 SM00358 Double-stranded RNA binding motif M480_3356 SM00535 Ribonuclease III family M480_3361 SM01321 M480_3361 M480_3368 SM00382 ATPases associated with a variety of cellular activities M480_3369 SM00825 Beta-ketoacyl synthase M480_3377 SM00851 MGS-like domain M480_3379 SM00881 CoA binding domain M480_3380 SM00992 Hemimethylated DNA-binding protein YccV like M480_3381 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase M480_3393 SM00825 Beta-ketoacyl synthase M480_3401 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. M480_3409 SM00382 ATPases associated with a variety of cellular activities M480_3409 SM01086 C-terminal, D2-small domain, of ClpB protein M480_3428 SM00382 ATPases associated with a variety of cellular activities M480_343 SM00062 Bacterial periplasmic substrate-binding proteins M480_343 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. M480_3431 SM00852 Probable molybdopterin binding domain M480_3433 SM00382 ATPases associated with a variety of cellular activities M480_3438 SM00829 Enoylreductase M480_3444 SM00382 ATPases associated with a variety of cellular activities M480_3446 SM00382 ATPases associated with a variety of cellular activities M480_345 SM00382 ATPases associated with a variety of cellular activities M480_3452 SM00919 Malic enzyme, NAD binding domain M480_3452 SM01274 M480_3452 M480_346 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) M480_346 SM00091 PAS domain M480_346 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). M480_3460 SM01321 M480_3460 M480_3466 SM01091 Transporter associated domain M480_3470 SM01006 Siderophore biosynthesis protein domain M480_3472 SM00382 ATPases associated with a variety of cellular activities M480_3480 SM01350 M480_3480 M480_3492 SM00382 ATPases associated with a variety of cellular activities M480_3493 SM00382 ATPases associated with a variety of cellular activities M480_3501 SM00634 Bacterial Ig-like domain (group 1) M480_3507 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain M480_351 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain M480_3517 SM00421 helix_turn_helix, Lux Regulon M480_3517 SM00448 cheY-homologous receiver domain M480_3526 SM00354 helix_turn _helix lactose operon repressor M480_3530 SM00090 RIO-like kinase M480_3531 SM01321 M480_3531 M480_3532 SM00382 ATPases associated with a variety of cellular activities M480_3534 SM00342 helix_turn_helix, arabinose operon control protein M480_3544 SM00357 Cold shock protein domain M480_3548 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) M480_3548 SM00091 PAS domain M480_3548 SM00267 diguanylate cyclase M480_3556 SM00347 helix_turn_helix multiple antibiotic resistance protein M480_3566 SM00903 Flavin reductase like domain M480_3572 SM00487 DEAD-like helicases superfamily M480_3572 SM00490 helicase superfamily c-terminal domain M480_3574 SM01022 M480_3574 M480_3589 SM01321 M480_3589 M480_3590 SM00634 Bacterial Ig-like domain (group 1) M480_3593 SM00858 M480_3593 M480_3602 SM00047 Lysozyme subfamily 2 M480_3606 SM01007 Class II Aldolase and Adducin N-terminal domain M480_3609 SM00382 ATPases associated with a variety of cellular activities M480_3623 SM00382 ATPases associated with a variety of cellular activities M480_363 SM00354 helix_turn _helix lactose operon repressor M480_3630 SM00478 endonuclease III M480_3631 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. M480_3632 SM00342 helix_turn_helix, arabinose operon control protein M480_3641 SM00062 Bacterial periplasmic substrate-binding proteins M480_3643 SM00382 ATPases associated with a variety of cellular activities M480_3660 SM00421 helix_turn_helix, Lux Regulon M480_3660 SM00448 cheY-homologous receiver domain M480_3661 SM00278 Helix-hairpin-helix DNA-binding motif class 1 M480_3661 SM00465 GIY-YIG type nucleases (URI domain) M480_3690 SM00345 helix_turn_helix gluconate operon transcriptional repressor M480_3690 SM00866 M480_3690 M480_3695 SM00382 ATPases associated with a variety of cellular activities M480_37 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain M480_3712 SM00822 M480_3712 M480_3712 SM00823 Phosphopantetheine attachment site M480_3712 SM00824 Thioesterase M480_3712 SM00825 Beta-ketoacyl synthase M480_3712 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. M480_3713 SM00823 Phosphopantetheine attachment site M480_3714 SM00342 helix_turn_helix, arabinose operon control protein M480_3715 SM00382 ATPases associated with a variety of cellular activities M480_3716 SM00382 ATPases associated with a variety of cellular activities M480_3728 SM00062 Bacterial periplasmic substrate-binding proteins M480_3728 SM00387 Histidine kinase-like ATPases M480_3728 SM00388 His Kinase A (phosphoacceptor) domain M480_3728 SM00448 cheY-homologous receiver domain M480_3729 SM00421 helix_turn_helix, Lux Regulon M480_3729 SM00448 cheY-homologous receiver domain M480_3743 SM00420 helix_turn_helix, Deoxyribose operon repressor M480_3743 SM01134 M480_3743 M480_3752 SM00382 ATPases associated with a variety of cellular activities M480_376 SM00926 Molybdopterin oxidoreductase Fe4S4 domain M480_376 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region M480_3766 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain M480_3766 SM00387 Histidine kinase-like ATPases M480_377 SM00928 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region M480_3782 SM00345 helix_turn_helix gluconate operon transcriptional repressor M480_3782 SM00866 M480_3782 M480_3798 SM00671 Sel1-like repeats. M480_3800 SM00671 Sel1-like repeats. M480_3811 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain M480_3811 SM00387 Histidine kinase-like ATPases M480_3811 SM00388 His Kinase A (phosphoacceptor) domain M480_3812 SM00862 Transcriptional regulatory protein, C terminal M480_3813 SM00382 ATPases associated with a variety of cellular activities M480_3815 SM00448 cheY-homologous receiver domain M480_3822 SM00450 Rhodanese Homology Domain M480_3828 SM01400 M480_3828 M480_3832 SM00937 M480_3832 M480_384 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. M480_3844 SM01321 M480_3844 M480_3849 SM00481 DNA polymerase alpha chain like domain M480_3857 SM00912 haemagglutination activity domain M480_3858 SM00836 DALR anticodon binding domain M480_3858 SM01016 Arginyl tRNA synthetase N terminal dom M480_3869 SM00278 Helix-hairpin-helix DNA-binding motif class 1 M480_3870 SM00382 ATPases associated with a variety of cellular activities M480_3872 SM00382 ATPases associated with a variety of cellular activities M480_3874 SM00257 Lysin motif M480_3884 SM00487 DEAD-like helicases superfamily M480_3884 SM00491 M480_3884 M480_3888 SM00341 Helicase and RNase D C-terminal M480_3888 SM00474 3'-5' exonuclease M480_3898 SM00382 ATPases associated with a variety of cellular activities M480_3904 SM01040 BRO family, N-terminal domain M480_391 SM00354 helix_turn _helix lactose operon repressor M480_3919 SM00635 Bacterial Ig-like domain 2 M480_3925 SM00635 Bacterial Ig-like domain 2 M480_3930 SM01321 M480_3930 M480_3932 SM00232 JAB/MPN domain M480_3937 SM01040 BRO family, N-terminal domain M480_3943 SM00060 Fibronectin type 3 domain M480_3953 SM00345 helix_turn_helix gluconate operon transcriptional repressor M480_3961 SM00763 PrkA AAA domain M480_3964 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain M480_3968 SM00870 M480_3968 M480_3972 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain M480_3972 SM00437 Bacterial DNA topoisomerase I DNA-binding domain M480_3972 SM00493 M480_3972 M480_3979 SM00984 UDP binding domain M480_398 SM00052 Putative diguanylate phosphodiesterase M480_3980 SM00448 cheY-homologous receiver domain M480_3986 SM00528 Domain in histone-like proteins of HNS family M480_3993 SM00382 ATPases associated with a variety of cellular activities M480_3994 SM00382 ATPases associated with a variety of cellular activities M480_3997 SM00155 Phospholipase D. Active site motifs. M480_40 SM00382 ATPases associated with a variety of cellular activities M480_400 SM00382 ATPases associated with a variety of cellular activities M480_4011 SM00749 bacterial OsmY and nodulation domain M480_4018 SM00481 DNA polymerase alpha chain like domain M480_4020 SM00363 S4 RNA-binding domain M480_4022 SM00822 M480_4022 M480_4026 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain M480_4026 SM00437 Bacterial DNA topoisomerase I DNA-binding domain M480_4026 SM00493 M480_4026 M480_4027 SM01321 M480_4027 M480_403 SM00062 Bacterial periplasmic substrate-binding proteins M480_4032 SM00014 Acid phosphatase homologues M480_4034 SM00028 Tetratricopeptide repeats M480_4036 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family M480_4039 SM01007 Class II Aldolase and Adducin N-terminal domain M480_4044 SM00357 Cold shock protein domain M480_4044 SM00955 M480_4044 M480_4047 SM00478 endonuclease III M480_4047 SM00525 M480_4047 M480_4049 SM00900 M480_4049 M480_4051 SM00342 helix_turn_helix, arabinose operon control protein M480_4060 SM00382 ATPases associated with a variety of cellular activities M480_4065 SM00382 ATPases associated with a variety of cellular activities M480_4068 SM00342 helix_turn_helix, arabinose operon control protein M480_4083 SM00354 helix_turn _helix lactose operon repressor M480_4088 SM00382 ATPases associated with a variety of cellular activities M480_4099 SM00098 Alkaline phosphatase homologues M480_41 SM01321 M480_41 M480_4101 SM00100 Cyclic nucleotide-monophosphate binding domain M480_4101 SM00419 helix_turn_helix, cAMP Regulatory protein M480_412 SM00859 Semialdehyde dehydrogenase, NAD binding domain M480_4123 SM00945 ProQ/FINO family M480_4129 SM00155 Phospholipase D. Active site motifs. M480_4133 SM00857 Resolvase, N terminal domain M480_4137 SM00470 ParB-like nuclease domain M480_4138 SM00382 ATPases associated with a variety of cellular activities M480_414 SM00342 helix_turn_helix, arabinose operon control protein M480_4146 SM00470 ParB-like nuclease domain M480_4148 SM00382 ATPases associated with a variety of cellular activities M480_4154 SM00232 JAB/MPN domain M480_4159 SM00635 Bacterial Ig-like domain 2 M480_4165 SM00635 Bacterial Ig-like domain 2 M480_4174 SM00382 ATPases associated with a variety of cellular activities M480_4175 SM00470 ParB-like nuclease domain M480_4176 SM00470 ParB-like nuclease domain M480_4177 SM00487 DEAD-like helicases superfamily M480_4177 SM00490 helicase superfamily c-terminal domain M480_4183 SM01321 M480_4183 M480_4187 SM01321 M480_4187 M480_419 SM00825 Beta-ketoacyl synthase M480_4196 SM00062 Bacterial periplasmic substrate-binding proteins M480_42 SM00091 PAS domain M480_42 SM00382 ATPases associated with a variety of cellular activities M480_4204 SM00244 prohibitin homologues M480_4208 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs M480_4208 SM00475 5'-3' exonuclease M480_4214 SM00481 DNA polymerase alpha chain like domain M480_4223 SM00342 helix_turn_helix, arabinose operon control protein M480_4248 SM00382 ATPases associated with a variety of cellular activities M480_4257 SM00342 helix_turn_helix, arabinose operon control protein M480_427 SM00463 Small MutS-related domain M480_4277 SM00194 Protein tyrosine phosphatase, catalytic domain M480_4277 SM00404 Protein tyrosine phosphatase, catalytic domain motif M480_428 SM00855 Phosphoglycerate mutase family M480_4280 SM00220 Serine/Threonine protein kinases, catalytic domain M480_4298 SM00857 Resolvase, N terminal domain M480_4312 SM00470 ParB-like nuclease domain M480_4324 SM00364 Leucine-rich repeats, bacterial type M480_44 SM00953 M480_44 M480_442 SM00382 ATPases associated with a variety of cellular activities M480_457 SM00382 ATPases associated with a variety of cellular activities M480_471 SM00382 ATPases associated with a variety of cellular activities M480_471 SM01086 C-terminal, D2-small domain, of ClpB protein M480_480 SM00421 helix_turn_helix, Lux Regulon M480_484 SM00382 ATPases associated with a variety of cellular activities M480_488 SM00926 Molybdopterin oxidoreductase Fe4S4 domain M480_5 SM00448 cheY-homologous receiver domain M480_5 SM00862 Transcriptional regulatory protein, C terminal M480_51 SM00382 ATPases associated with a variety of cellular activities M480_513 SM01321 M480_513 M480_517 SM00278 Helix-hairpin-helix DNA-binding motif class 1 M480_517 SM00292 breast cancer carboxy-terminal domain M480_517 SM00532 Ligase N family M480_518 SM00771 ZipA, C-terminal domain (FtsZ-binding) M480_52 SM01321 M480_52 M480_524 SM01321 M480_524 M480_526 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain M480_526 SM00387 Histidine kinase-like ATPases M480_526 SM00388 His Kinase A (phosphoacceptor) domain M480_527 SM00448 cheY-homologous receiver domain M480_527 SM00862 Transcriptional regulatory protein, C terminal M480_529 SM00382 ATPases associated with a variety of cellular activities M480_530 SM00450 Rhodanese Homology Domain M480_536 SM00327 von Willebrand factor (vWF) type A domain M480_537 SM00387 Histidine kinase-like ATPases M480_537 SM00388 His Kinase A (phosphoacceptor) domain M480_538 SM00448 cheY-homologous receiver domain M480_538 SM00862 Transcriptional regulatory protein, C terminal M480_541 SM00382 ATPases associated with a variety of cellular activities M480_549 SM00364 Leucine-rich repeats, bacterial type M480_549 SM00369 Leucine-rich repeats, typical (most populated) subfamily M480_551 SM01130 M480_551 M480_556 SM00869 Autotransporter beta-domain M480_56 SM00382 ATPases associated with a variety of cellular activities M480_562 SM00919 Malic enzyme, NAD binding domain M480_562 SM01274 M480_562 M480_566 SM00926 Molybdopterin oxidoreductase Fe4S4 domain M480_569 SM00421 helix_turn_helix, Lux Regulon M480_569 SM00448 cheY-homologous receiver domain M480_57 SM00382 ATPases associated with a variety of cellular activities M480_576 SM00382 ATPases associated with a variety of cellular activities M480_588 SM01321 M480_588 M480_590 SM01130 M480_590 M480_599 SM01321 M480_599 M480_6 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain M480_6 SM00387 Histidine kinase-like ATPases M480_6 SM00388 His Kinase A (phosphoacceptor) domain M480_606 SM00382 ATPases associated with a variety of cellular activities M480_611 SM00924 MgtE intracellular N domain M480_617 SM00345 helix_turn_helix gluconate operon transcriptional repressor M480_618 SM00382 ATPases associated with a variety of cellular activities M480_624 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain M480_624 SM00387 Histidine kinase-like ATPases M480_624 SM00388 His Kinase A (phosphoacceptor) domain M480_625 SM00448 cheY-homologous receiver domain M480_625 SM00862 Transcriptional regulatory protein, C terminal M480_628 SM00046 Diacylglycerol kinase catalytic domain (presumed) M480_642 SM00116 Domain in cystathionine beta-synthase and other proteins. M480_642 SM01240 M480_642 M480_647 SM00564 beta-propeller repeat M480_65 SM00363 S4 RNA-binding domain M480_651 SM00530 Helix-turn-helix XRE-family like proteins M480_652 SM00028 Tetratricopeptide repeats M480_654 SM00562 M480_654 M480_655 SM00247 Beta/gamma crystallins M480_656 SM00869 Autotransporter beta-domain M480_664 SM00271 DnaJ molecular chaperone homology domain M480_679 SM00382 ATPases associated with a variety of cellular activities M480_681 SM00938 Nitrogen regulatory protein P-II M480_683 SM00382 ATPases associated with a variety of cellular activities M480_683 SM00448 cheY-homologous receiver domain M480_685 SM00387 Histidine kinase-like ATPases M480_685 SM00388 His Kinase A (phosphoacceptor) domain M480_686 SM01321 M480_686 M480_690 SM01211 M480_690 M480_691 SM00062 Bacterial periplasmic substrate-binding proteins M480_701 SM00382 ATPases associated with a variety of cellular activities M480_702 SM00981 M480_702 M480_711 SM00849 Metallo-beta-lactamase superfamily M480_714 SM01321 M480_714 M480_722 SM00357 Cold shock protein domain M480_723 SM01150 M480_723 M480_725 SM00382 ATPases associated with a variety of cellular activities M480_726 SM00849 Metallo-beta-lactamase superfamily M480_727 SM00411 bacterial (prokaryotic) histone like domain M480_729 SM00316 Ribosomal protein S1-like RNA-binding domain M480_735 SM00870 M480_735 M480_743 SM00382 ATPases associated with a variety of cellular activities M480_746 SM00843 M480_746 M480_747 SM00344 helix_turn_helix ASNC type M480_749 SM00382 ATPases associated with a variety of cellular activities M480_750 SM00382 ATPases associated with a variety of cellular activities M480_752 SM00316 Ribosomal protein S1-like RNA-binding domain M480_753 SM01321 M480_753 M480_754 SM00382 ATPases associated with a variety of cellular activities M480_754 SM01086 C-terminal, D2-small domain, of ClpB protein M480_756 SM00357 Cold shock protein domain M480_757 SM00382 ATPases associated with a variety of cellular activities M480_769 SM00830 Chorismate mutase type II M480_77 SM00479 M480_77 M480_770 SM00382 ATPases associated with a variety of cellular activities M480_771 SM00062 Bacterial periplasmic substrate-binding proteins M480_771 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. M480_777 SM00382 ATPases associated with a variety of cellular activities M480_781 SM00244 prohibitin homologues M480_787 SM00382 ATPases associated with a variety of cellular activities M480_794 SM00014 Acid phosphatase homologues M480_795 SM01133 M480_795 M480_796 SM00420 helix_turn_helix, Deoxyribose operon repressor M480_796 SM01134 M480_796 M480_798 SM00936 Penicillin-binding protein 5, C-terminal domain M480_8 SM01321 M480_8 M480_800 SM00382 ATPases associated with a variety of cellular activities M480_800 SM00930 M480_800 M480_806 SM00382 ATPases associated with a variety of cellular activities M480_809 SM01321 M480_809 M480_814 SM00518 AP endonuclease family 2 M480_819 SM00862 Transcriptional regulatory protein, C terminal M480_825 SM00382 ATPases associated with a variety of cellular activities M480_83 SM00354 helix_turn _helix lactose operon repressor M480_835 SM00841 Elongation factor P, C-terminal M480_835 SM01185 M480_835 M480_838 SM00345 helix_turn_helix gluconate operon transcriptional repressor M480_838 SM00895 M480_838 M480_840 SM00833 Cobalamin synthesis protein cobW C-terminal domain M480_841 SM00014 Acid phosphatase homologues M480_844 SM00052 Putative diguanylate phosphodiesterase M480_848 SM00382 ATPases associated with a variety of cellular activities M480_851 SM00363 S4 RNA-binding domain M480_852 SM00487 DEAD-like helicases superfamily M480_852 SM00490 helicase superfamily c-terminal domain M480_854 SM01321 M480_854 M480_884 SM00420 helix_turn_helix, Deoxyribose operon repressor M480_884 SM01134 M480_884 M480_885 SM01007 Class II Aldolase and Adducin N-terminal domain M480_888 SM00530 Helix-turn-helix XRE-family like proteins M480_892 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). M480_892 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain M480_904 SM00421 helix_turn_helix, Lux Regulon M480_904 SM00448 cheY-homologous receiver domain M480_905 SM00387 Histidine kinase-like ATPases M480_905 SM00388 His Kinase A (phosphoacceptor) domain M480_905 SM00448 cheY-homologous receiver domain M480_906 SM00434 DNA Topoisomerase IV M480_912 SM00852 Probable molybdopterin binding domain M480_915 SM01060 M480_915 M480_916 SM00487 DEAD-like helicases superfamily M480_916 SM00488 M480_916 M480_916 SM00491 M480_916 M480_925 SM00382 ATPases associated with a variety of cellular activities M480_928 SM00450 Rhodanese Homology Domain M480_93 SM01321 M480_93 M480_931 SM00382 ATPases associated with a variety of cellular activities M480_940 SM00382 ATPases associated with a variety of cellular activities M480_943 SM00507 HNH nucleases M480_944 SM01118 M480_944 M480_95 SM00382 ATPases associated with a variety of cellular activities M480_950 SM01321 M480_950 M480_959 SM01321 M480_959 M480_964 SM00729 Elongator protein 3, MiaB family, Radical SAM M480_968 SM00487 DEAD-like helicases superfamily M480_968 SM00490 helicase superfamily c-terminal domain M480_969 SM00382 ATPases associated with a variety of cellular activities M480_973 SM00729 Elongator protein 3, MiaB family, Radical SAM M480_973 SM00876 Biotin and Thiamin Synthesis associated domain M480_977 SM00382 ATPases associated with a variety of cellular activities M480_982 SM00382 ATPases associated with a variety of cellular activities M480_992 SM00855 Phosphoglycerate mutase family