locus-tag class description M481_1 PF02491 SHS2 domain inserted in FTSA M481_10 PF08245 Mur ligase middle domain M481_10 PF02875 Mur ligase family, glutamate ligase domain M481_10 PF01225 Mur ligase family, catalytic domain M481_100 PF01371 Trp repressor protein M481_1000 PF00709 Adenylosuccinate synthetase M481_1001 PF02082 Transcriptional regulator M481_1002 PF17876 Cold shock domain M481_1002 PF08461 Ribonuclease R winged-helix domain M481_1002 PF00575 S1 RNA binding domain M481_1002 PF00773 RNB domain M481_1002 PF08206 Ribonuclease B OB domain M481_1003 PF00588 SpoU rRNA Methylase family M481_1003 PF08032 RNA 2'-O ribose methyltransferase substrate binding M481_1004 PF00441 Acyl-CoA dehydrogenase, C-terminal domain M481_1004 PF02770 Acyl-CoA dehydrogenase, middle domain M481_1004 PF18158 Adaptive response protein AidB N-terminal domain M481_1005 PF07338 Protein of unknown function (DUF1471) M481_1006 PF00665 Integrase core domain M481_1006 PF02796 Helix-turn-helix domain of resolvase M481_1007 PF01695 IstB-like ATP binding protein M481_1008 PF00326 Prolyl oligopeptidase family M481_101 PF01931 Protein of unknown function DUF84 M481_1010 PF01250 Ribosomal protein S6 M481_1011 PF01084 Ribosomal protein S18 M481_1012 PF01281 Ribosomal protein L9, N-terminal domain M481_1012 PF03948 Ribosomal protein L9, C-terminal domain M481_1015 PF08525 Opacity-associated protein A N-terminal motif M481_1015 PF04225 Opacity-associated protein A LysM-like domain M481_1016 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase M481_1016 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase M481_1017 PF04405 Domain of Unknown function (DUF542) M481_1017 PF01814 Hemerythrin HHE cation binding domain M481_1018 PF02872 5'-nucleotidase, C-terminal domain M481_1018 PF00149 Calcineurin-like phosphoesterase M481_1019 PF00459 Inositol monophosphatase family M481_102 PF14718 Soluble lytic murein transglycosylase L domain M481_102 PF01464 Transglycosylase SLT domain M481_1020 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) M481_1021 PF06526 Protein of unknown function (DUF1107) M481_1022 PF00571 CBS domain M481_1022 PF03471 Transporter associated domain M481_1022 PF01595 Cyclin M transmembrane N-terminal domain M481_1023 PF01625 Peptide methionine sulfoxide reductase M481_1024 PF01103 Surface antigen M481_1024 PF17243 POTRA domain TamA domain 1 M481_1024 PF07244 Surface antigen variable number repeat M481_1025 PF04357 TamB, inner membrane protein subunit of TAM complex M481_1026 PF06094 Gamma-glutamyl cyclotransferase, AIG2-like M481_1027 PF00719 Inorganic pyrophosphatase M481_1028 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain M481_1029 PF01225 Mur ligase family, catalytic domain M481_1029 PF02875 Mur ligase family, glutamate ligase domain M481_1029 PF08245 Mur ligase middle domain M481_103 PF00689 Cation transporting ATPase, C-terminus M481_103 PF00690 Cation transporter/ATPase, N-terminus M481_1031 PF02863 Arginine repressor, C-terminal domain M481_1031 PF01316 Arginine repressor, DNA binding domain M481_1032 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain M481_1032 PF00056 lactate/malate dehydrogenase, NAD binding domain M481_1033 PF13693 Winged helix-turn-helix DNA-binding M481_1035 PF00348 Polyprenyl synthetase M481_1036 PF00829 Ribosomal prokaryotic L21 protein M481_1037 PF01016 Ribosomal L27 protein M481_1038 PF00892 EamA-like transporter family M481_1039 PF01018 GTP1/OBG M481_1039 PF01926 50S ribosome-binding GTPase M481_1040 PF00672 HAMP domain M481_1040 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M481_1040 PF00512 His Kinase A (phospho-acceptor) domain M481_1041 PF00072 Response regulator receiver domain M481_1041 PF00486 Transcriptional regulatory protein, C terminal M481_1042 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family M481_1043 PF01272 Transcription elongation factor, GreA/GreB, C-term M481_1043 PF03449 Transcription elongation factor, N-terminal M481_1044 PF01985 CRS1 / YhbY (CRM) domain M481_1045 PF01728 FtsJ-like methyltransferase M481_1046 PF01434 Peptidase family M41 M481_1046 PF06480 FtsH Extracellular M481_1046 PF00004 ATPase family associated with various cellular activities (AAA) M481_1046 PF17862 AAA+ lid domain M481_1047 PF00809 Pterin binding enzyme M481_1048 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III M481_1048 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II M481_1048 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain M481_1048 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I M481_1049 PF03840 Preprotein translocase SecG subunit M481_105 PF17152 Periplasmic sensor domain M481_105 PF00990 Diguanylate cyclase, GGDEF domain M481_1052 PF17384 RimP C-terminal SH3 domain M481_1052 PF02576 RimP N-terminal domain M481_1053 PF13184 NusA-like KH domain M481_1053 PF08529 NusA N-terminal domain M481_1053 PF00575 S1 RNA binding domain M481_1054 PF03144 Elongation factor Tu domain 2 M481_1054 PF04760 Translation initiation factor IF-2, N-terminal region M481_1054 PF08364 Bacterial translation initiation factor IF-2 associated region M481_1054 PF11987 Translation-initiation factor 2 M481_1054 PF00009 Elongation factor Tu GTP binding domain M481_1055 PF02033 Ribosome-binding factor A M481_1056 PF16198 tRNA pseudouridylate synthase B C-terminal domain M481_1056 PF01509 TruB family pseudouridylate synthase (N terminal domain) M481_1056 PF09157 Pseudouridine synthase II TruB, C-terminal M481_1057 PF00312 Ribosomal protein S15 M481_1058 PF13333 Integrase core domain M481_1058 PF00665 Integrase core domain M481_1058 PF13276 HTH-like domain M481_106 PF00691 OmpA family M481_1060 PF00311 Phosphoenolpyruvate carboxylase M481_1061 PF07687 Peptidase dimerisation domain M481_1061 PF01546 Peptidase family M20/M25/M40 M481_1062 PF01118 Semialdehyde dehydrogenase, NAD binding domain M481_1062 PF02774 Semialdehyde dehydrogenase, dimerisation domain M481_1063 PF00696 Amino acid kinase family M481_1064 PF00206 Lyase M481_1064 PF14698 Argininosuccinate lyase C-terminal M481_1066 PF07715 TonB-dependent Receptor Plug Domain M481_1066 PF00593 TonB dependent receptor M481_1068 PF00005 ABC transporter M481_1068 PF00664 ABC transporter transmembrane region M481_1069 PF00529 HlyD membrane-fusion protein of T1SS M481_107 PF12848 ABC transporter M481_107 PF00005 ABC transporter M481_1070 PF03544 Gram-negative bacterial TonB protein C-terminal M481_1071 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain M481_1071 PF07992 Pyridine nucleotide-disulphide oxidoreductase M481_1072 PF00462 Glutaredoxin M481_1072 PF08534 Redoxin M481_1073 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain M481_1073 PF07992 Pyridine nucleotide-disulphide oxidoreductase M481_1074 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M481_1074 PF03466 LysR substrate binding domain M481_1076 PF00440 Bacterial regulatory proteins, tetR family M481_1077 PF07226 Protein of unknown function (DUF1422) M481_1078 PF05958 tRNA (Uracil-5-)-methyltransferase M481_1079 PF00593 TonB dependent receptor M481_1079 PF07715 TonB-dependent Receptor Plug Domain M481_1080 PF01177 Asp/Glu/Hydantoin racemase M481_1086 PF10043 Predicted periplasmic lipoprotein (DUF2279) M481_1087 PF13091 PLD-like domain M481_1088 PF00583 Acetyltransferase (GNAT) family M481_1088 PF13607 Succinyl-CoA ligase like flavodoxin domain M481_1088 PF13380 CoA binding domain M481_1090 PF00085 Thioredoxin M481_1091 PF00588 SpoU rRNA Methylase family M481_1091 PF08032 RNA 2'-O ribose methyltransferase substrate binding M481_1092 PF07690 Major Facilitator Superfamily M481_1093 PF00529 HlyD membrane-fusion protein of T1SS M481_1093 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion M481_1094 PF01047 MarR family M481_1095 PF05437 Branched-chain amino acid transport protein (AzlD) M481_1096 PF03591 AzlC protein M481_1097 PF07690 Major Facilitator Superfamily M481_1099 PF01425 Amidase M481_11 PF00905 Penicillin binding protein transpeptidase domain M481_11 PF03717 Penicillin-binding Protein dimerisation domain M481_110 PF13521 AAA domain M481_110 PF01381 Helix-turn-helix M481_1102 PF00497 Bacterial extracellular solute-binding proteins, family 3 M481_1103 PF00528 Binding-protein-dependent transport system inner membrane component M481_1105 PF00005 ABC transporter M481_1106 PF00266 Aminotransferase class-V M481_1107 PF01695 IstB-like ATP binding protein M481_1108 PF02796 Helix-turn-helix domain of resolvase M481_1108 PF00665 Integrase core domain M481_1109 PF00266 Aminotransferase class-V M481_111 PF18073 Rubredoxin metal binding domain M481_1110 PF01546 Peptidase family M20/M25/M40 M481_1110 PF07687 Peptidase dimerisation domain M481_1111 PF00795 Carbon-nitrogen hydrolase M481_1112 PF00155 Aminotransferase class I and II M481_1113 PF00596 Class II Aldolase and Adducin N-terminal domain M481_1115 PF03079 ARD/ARD' family M481_1116 PF01008 Initiation factor 2 subunit family M481_1117 PF01636 Phosphotransferase enzyme family M481_1118 PF08479 POTRA domain, ShlB-type M481_1118 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB M481_1119 PF05860 haemagglutination activity domain M481_112 PF18429 Domain of unknown function (DUF5609) M481_1120 PF18071 HMW1C N-terminal M481_1120 PF18254 HMW1 domain 2 M481_1123 PF02771 Acyl-CoA dehydrogenase, N-terminal domain M481_1123 PF00441 Acyl-CoA dehydrogenase, C-terminal domain M481_1123 PF09317 Domain of unknown function (DUF1974) M481_1124 PF13580 SIS domain M481_1125 PF03734 L,D-transpeptidase catalytic domain M481_1126 PF13230 Glutamine amidotransferases class-II M481_1127 PF11973 NQRA C-terminal domain M481_1127 PF05896 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) M481_1128 PF03116 NQR2, RnfD, RnfE family M481_1129 PF04205 FMN-binding domain M481_113 PF10144 Bacterial virulence factor haemolysin M481_1130 PF02508 Rnf-Nqr subunit, membrane protein M481_1131 PF02508 Rnf-Nqr subunit, membrane protein M481_1132 PF00970 Oxidoreductase FAD-binding domain M481_1132 PF00111 2Fe-2S iron-sulfur cluster binding domain M481_1132 PF00175 Oxidoreductase NAD-binding domain M481_1133 PF02424 ApbE family M481_1135 PF03009 Glycerophosphoryl diester phosphodiesterase family M481_1136 PF11798 IMS family HHH motif M481_1136 PF00817 impB/mucB/samB family M481_1136 PF11799 impB/mucB/samB family C-terminal domain M481_1137 PF01546 Peptidase family M20/M25/M40 M481_1137 PF07687 Peptidase dimerisation domain M481_114 PF01048 Phosphorylase superfamily M481_1141 PF00156 Phosphoribosyl transferase domain M481_1143 PF07417 Sigma factor-binding transcriptional regulator Crl M481_1144 PF01472 PUA domain M481_1144 PF00696 Amino acid kinase family M481_1145 PF00171 Aldehyde dehydrogenase family M481_1146 PF07317 Flagellar regulator YcgR M481_1146 PF07238 PilZ domain M481_1148 PF08241 Methyltransferase domain M481_115 PF01676 Metalloenzyme superfamily M481_1150 PF01202 Shikimate kinase M481_1151 PF06865 Pyrimidine/purine nucleoside phosphorylase M481_1152 PF04381 Putative exonuclease, RdgC M481_1153 PF00480 ROK family M481_1154 PF13476 AAA domain M481_1155 PF00149 Calcineurin-like phosphoesterase M481_1155 PF12320 Type 5 capsule protein repressor C-terminal domain M481_1156 PF00072 Response regulator receiver domain M481_1156 PF00486 Transcriptional regulatory protein, C terminal M481_1157 PF11808 Phosphate regulon sensor protein PhoR M481_1157 PF00989 PAS fold M481_1157 PF00512 His Kinase A (phospho-acceptor) domain M481_1157 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M481_1158 PF12849 PBP superfamily domain M481_1159 PF05525 Branched-chain amino acid transport protein M481_116 PF00591 Glycosyl transferase family, a/b domain M481_116 PF02885 Glycosyl transferase family, helical bundle domain M481_116 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain M481_1160 PF00324 Amino acid permease M481_1161 PF02903 Alpha amylase, N-terminal ig-like domain M481_1161 PF00128 Alpha amylase, catalytic domain M481_1165 PF10417 C-terminal domain of 1-Cys peroxiredoxin M481_1165 PF00578 AhpC/TSA family M481_1166 PF04336 Acyl carrier protein phosphodiesterase M481_1167 PF02547 Queuosine biosynthesis protein M481_1168 PF01702 Queuine tRNA-ribosyltransferase M481_1169 PF02699 Preprotein translocase subunit M481_117 PF01791 DeoC/LacD family aldolase M481_1170 PF07549 SecD/SecF GG Motif M481_1170 PF13721 SecD export protein N-terminal TM region M481_1170 PF02355 Protein export membrane protein M481_1171 PF02355 Protein export membrane protein M481_1171 PF07549 SecD/SecF GG Motif M481_1175 PF03477 ATP cone domain M481_1176 PF01872 RibD C-terminal domain M481_1176 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region M481_1177 PF00885 6,7-dimethyl-8-ribityllumazine synthase M481_1178 PF01029 NusB family M481_1179 PF02769 AIR synthase related protein, C-terminal domain M481_1179 PF00586 AIR synthase related protein, N-terminal domain M481_118 PF07670 Nucleoside recognition M481_118 PF07662 Na+ dependent nucleoside transporter C-terminus M481_118 PF01773 Na+ dependent nucleoside transporter N-terminus M481_1180 PF04608 Phosphatidylglycerophosphatase A M481_1182 PF13292 1-deoxy-D-xylulose-5-phosphate synthase M481_1182 PF02780 Transketolase, C-terminal domain M481_1182 PF02779 Transketolase, pyrimidine binding domain M481_1183 PF00348 Polyprenyl synthetase M481_1184 PF02609 Exonuclease VII small subunit M481_1185 PF02568 Thiamine biosynthesis protein (ThiI) M481_1185 PF02926 THUMP domain M481_1186 PF01965 DJ-1/PfpI family M481_1187 PF02558 Ketopantoate reductase PanE/ApbA M481_1187 PF08546 Ketopantoate reductase PanE/ApbA C terminal M481_1188 PF04461 Protein of unknown function (DUF520) M481_1189 PF07690 Major Facilitator Superfamily M481_119 PF01026 TatD related DNase M481_1190 PF01040 UbiA prenyltransferase family M481_1191 PF03626 Prokaryotic Cytochrome C oxidase subunit IV M481_1192 PF00510 Cytochrome c oxidase subunit III M481_1193 PF00115 Cytochrome C and Quinol oxidase polypeptide I M481_1194 PF00116 Cytochrome C oxidase subunit II, periplasmic domain M481_1194 PF06481 COX Aromatic Rich Motif M481_1195 PF03502 Nucleoside-specific channel-forming protein, Tsx M481_1196 PF07690 Major Facilitator Superfamily M481_1197 PF08139 Prokaryotic membrane lipoprotein lipid attachment site M481_1197 PF03923 Uncharacterized lipoprotein M481_1198 PF01722 BolA-like protein M481_12 PF04999 Cell division protein FtsL M481_120 PF01734 Patatin-like phospholipase M481_1200 PF05698 Bacterial trigger factor protein (TF) C-terminus M481_1200 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase M481_1200 PF05697 Bacterial trigger factor protein (TF) M481_1201 PF00574 Clp protease M481_1202 PF10431 C-terminal, D2-small domain, of ClpB protein M481_1202 PF06689 ClpX C4-type zinc finger M481_1202 PF07724 AAA domain (Cdc48 subfamily) M481_1203 PF02190 ATP-dependent protease La (LON) substrate-binding domain M481_1203 PF00004 ATPase family associated with various cellular activities (AAA) M481_1203 PF05362 Lon protease (S16) C-terminal proteolytic domain M481_1204 PF00216 Bacterial DNA-binding protein M481_1206 PF01797 Transposase IS200 like M481_1207 PF13145 PPIC-type PPIASE domain M481_121 PF07043 Protein of unknown function (DUF1328) M481_1210 PF06508 Queuosine biosynthesis protein QueC M481_1211 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle M481_1211 PF12793 Sugar transport-related sRNA regulator N-term M481_1213 PF00291 Pyridoxal-phosphate dependent enzyme M481_1214 PF13404 AsnC-type helix-turn-helix domain M481_1214 PF01037 Lrp/AsnC ligand binding domain M481_1215 PF00664 ABC transporter transmembrane region M481_1215 PF00005 ABC transporter M481_1216 PF00664 ABC transporter transmembrane region M481_1216 PF00005 ABC transporter M481_1217 PF00543 Nitrogen regulatory protein P-II M481_1218 PF00909 Ammonium Transporter Family M481_122 PF04972 BON domain M481_1220 PF09619 Type III secretion system lipoprotein chaperone (YscW) M481_1221 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain M481_1222 PF05321 Haemolysin expression modulating protein M481_1223 PF10757 Biofilm formation regulator YbaJ M481_1225 PF00444 Ribosomal protein L36 M481_1226 PF01197 Ribosomal protein L31 M481_1227 PF00873 AcrB/AcrD/AcrF family M481_1228 PF00529 HlyD membrane-fusion protein of T1SS M481_1228 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion M481_1229 PF08361 MAATS-type transcriptional repressor, C-terminal region M481_1229 PF00440 Bacterial regulatory proteins, tetR family M481_123 PF00009 Elongation factor Tu GTP binding domain M481_123 PF03144 Elongation factor Tu domain 2 M481_123 PF16658 Class II release factor RF3, C-terminal domain M481_1230 PF02635 DsrE/DsrF-like family M481_1231 PF12794 Mechanosensitive ion channel inner membrane domain 1 M481_1231 PF12795 Mechanosensitive ion channel porin domain M481_1231 PF00924 Mechanosensitive ion channel M481_1233 PF04304 Protein of unknown function (DUF454) M481_1234 PF00156 Phosphoribosyl transferase domain M481_1235 PF12169 DNA polymerase III subunits gamma and tau domain III M481_1235 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding M481_1235 PF12170 DNA polymerase III tau subunit V interacting with alpha M481_1236 PF02575 YbaB/EbfC DNA-binding family M481_1237 PF13662 Toprim domain M481_1237 PF02132 RecR protein M481_1238 PF00183 Hsp90 protein M481_1238 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M481_1239 PF05191 Adenylate kinase, active site lid M481_124 PF00583 Acetyltransferase (GNAT) family M481_1240 PF00762 Ferrochelatase M481_1241 PF00970 Oxidoreductase FAD-binding domain M481_1241 PF00111 2Fe-2S iron-sulfur cluster binding domain M481_1241 PF00175 Oxidoreductase NAD-binding domain M481_1242 PF00483 Nucleotidyl transferase M481_1243 PF16363 GDP-mannose 4,6 dehydratase M481_1244 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family M481_1245 PF01370 NAD dependent epimerase/dehydratase family M481_125 PF03603 DNA polymerase III psi subunit M481_1252 PF13439 Glycosyltransferase Family 4 M481_1252 PF00534 Glycosyl transferases group 1 M481_1253 PF16363 GDP-mannose 4,6 dehydratase M481_1254 PF16363 GDP-mannose 4,6 dehydratase M481_1255 PF01370 NAD dependent epimerase/dehydratase family M481_1256 PF01050 Mannose-6-phosphate isomerase M481_1256 PF00483 Nucleotidyl transferase M481_1257 PF00535 Glycosyl transferase family 2 M481_1258 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III M481_1258 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I M481_1258 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II M481_1258 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain M481_1259 PF02706 Chain length determinant protein M481_126 PF05175 Methyltransferase small domain M481_126 PF08468 Methyltransferase small domain N-terminal M481_1260 PF00294 pfkB family carbohydrate kinase M481_1261 PF02254 TrkA-N domain M481_1261 PF00999 Sodium/hydrogen exchanger family M481_1262 PF07690 Major Facilitator Superfamily M481_1263 PF07690 Major Facilitator Superfamily M481_1264 PF00149 Calcineurin-like phosphoesterase M481_1264 PF02872 5'-nucleotidase, C-terminal domain M481_1265 PF02872 5'-nucleotidase, C-terminal domain M481_1265 PF00149 Calcineurin-like phosphoesterase M481_1266 PF02872 5'-nucleotidase, C-terminal domain M481_1266 PF00149 Calcineurin-like phosphoesterase M481_1269 PF04073 Aminoacyl-tRNA editing domain M481_1270 PF01963 TraB family M481_1271 PF00403 Heavy-metal-associated domain M481_1272 PF13411 MerR HTH family regulatory protein M481_1273 PF01957 NfeD-like C-terminal, partner-binding M481_1274 PF16200 C-terminal region of band_7 M481_1274 PF01145 SPFH domain / Band 7 family M481_1275 PF00085 Thioredoxin M481_1276 PF00106 short chain dehydrogenase M481_1277 PF13472 GDSL-like Lipase/Acylhydrolase family M481_1278 PF00005 ABC transporter M481_128 PF07256 Protein of unknown function (DUF1435) M481_1280 PF02222 ATP-grasp domain M481_1280 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain M481_1281 PF00731 AIR carboxylase M481_1282 PF00149 Calcineurin-like phosphoesterase M481_1283 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD M481_1284 PF09190 DALR domain M481_1284 PF01406 tRNA synthetases class I (C) catalytic domain M481_1287 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain M481_1287 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain M481_129 PF00990 Diguanylate cyclase, GGDEF domain M481_1293 PF01066 CDP-alcohol phosphatidyltransferase M481_1295 PF01553 Acyltransferase M481_1296 PF12147 Putative methyltransferase M481_1296 PF12146 Serine aminopeptidase, S33 M481_1297 PF00782 Dual specificity phosphatase, catalytic domain M481_13 PF01795 MraW methylase family M481_130 PF01095 Pectinesterase M481_1300 PF01695 IstB-like ATP binding protein M481_1302 PF02796 Helix-turn-helix domain of resolvase M481_1302 PF00665 Integrase core domain M481_1303 PF03466 LysR substrate binding domain M481_1303 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M481_1304 PF00248 Aldo/keto reductase family M481_1305 PF00248 Aldo/keto reductase family M481_1311 PF00872 Transposase, Mutator family M481_1312 PF08007 Cupin superfamily protein M481_1314 PF03797 Autotransporter beta-domain M481_1314 PF13018 Extended Signal Peptide of Type V secretion system M481_1314 PF16168 Adhesin of bacterial autotransporter system, probable stalk M481_1314 PF03212 Pertactin M481_1317 PF05638 Type VI secretion system effector, Hcp M481_132 PF00873 AcrB/AcrD/AcrF family M481_1321 PF13693 Winged helix-turn-helix DNA-binding M481_1322 PF00912 Transglycosylase M481_1322 PF06832 Penicillin-Binding Protein C-terminus Family M481_1322 PF00905 Penicillin binding protein transpeptidase domain M481_1323 PF17972 Bacterial Alpha-2-macroglobulin MG5 domain M481_1323 PF11974 Bacterial alpha-2-macroglobulin MG3 domain M481_1323 PF17973 Bacterial Alpha-2-macroglobulin MG10 domain M481_1323 PF01835 MG2 domain M481_1323 PF17962 Bacterial macroglobulin domain 6 M481_1323 PF07703 Alpha-2-macroglobulin bait region domain M481_1323 PF00207 Alpha-2-macroglobulin family M481_1328 PF00171 Aldehyde dehydrogenase family M481_1329 PF00205 Thiamine pyrophosphate enzyme, central domain M481_1329 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain M481_1329 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain M481_133 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion M481_1330 PF02894 Oxidoreductase family, C-terminal alpha/beta domain M481_1330 PF01408 Oxidoreductase family, NAD-binding Rossmann fold M481_1331 PF01408 Oxidoreductase family, NAD-binding Rossmann fold M481_1331 PF02894 Oxidoreductase family, C-terminal alpha/beta domain M481_1332 PF13407 Periplasmic binding protein domain M481_1333 PF00005 ABC transporter M481_1334 PF02653 Branched-chain amino acid transport system / permease component M481_1335 PF02894 Oxidoreductase family, C-terminal alpha/beta domain M481_1335 PF01408 Oxidoreductase family, NAD-binding Rossmann fold M481_1336 PF00294 pfkB family carbohydrate kinase M481_1337 PF01261 Xylose isomerase-like TIM barrel M481_1338 PF04962 KduI/IolB family M481_1340 PF00005 ABC transporter M481_1340 PF00664 ABC transporter transmembrane region M481_1345 PF00196 Bacterial regulatory proteins, luxR family M481_1346 PF00313 'Cold-shock' DNA-binding domain M481_1347 PF00313 'Cold-shock' DNA-binding domain M481_1348 PF02537 CrcB-like protein, Camphor Resistance (CrcB) M481_1349 PF02416 mttA/Hcf106 family M481_1350 PF04055 Radical SAM superfamily M481_1350 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family M481_1351 PF03099 Biotin/lipoate A/B protein ligase family M481_1352 PF04359 Protein of unknown function (DUF493) M481_1353 PF00768 D-alanyl-D-alanine carboxypeptidase M481_1353 PF07943 Penicillin-binding protein 5, C-terminal domain M481_1354 PF05036 Sporulation related domain M481_1354 PF03330 Lytic transglycolase M481_1355 PF01098 Cell cycle protein M481_1356 PF03717 Penicillin-binding Protein dimerisation domain M481_1356 PF00905 Penicillin binding protein transpeptidase domain M481_1357 PF02590 Predicted SPOUT methyltransferase M481_1359 PF01467 Cytidylyltransferase-like M481_136 PF01075 Glycosyltransferase family 9 (heptosyltransferase) M481_1360 PF14840 Processivity clamp loader gamma complex DNA pol III C-term M481_1360 PF06144 DNA polymerase III, delta subunit M481_1361 PF04390 Lipopolysaccharide-assembly M481_1362 PF13603 Leucyl-tRNA synthetase, Domain 2 M481_1362 PF08264 Anticodon-binding domain of tRNA M481_1362 PF00133 tRNA synthetases class I (I, L, M and V) M481_1363 PF07295 Zinc-ribbon containing domain M481_1364 PF00005 ABC transporter M481_1365 PF00528 Binding-protein-dependent transport system inner membrane component M481_1366 PF00528 Binding-protein-dependent transport system inner membrane component M481_1367 PF00497 Bacterial extracellular solute-binding proteins, family 3 M481_1368 PF00795 Carbon-nitrogen hydrolase M481_1369 PF03471 Transporter associated domain M481_1369 PF00571 CBS domain M481_137 PF00370 FGGY family of carbohydrate kinases, N-terminal domain M481_137 PF02782 FGGY family of carbohydrate kinases, C-terminal domain M481_1370 PF02130 Uncharacterized protein family UPF0054 M481_1371 PF02562 PhoH-like protein M481_1372 PF04055 Radical SAM superfamily M481_1372 PF01938 TRAM domain M481_1372 PF00919 Uncharacterized protein family UPF0004 M481_1373 PF01494 FAD binding domain M481_138 PF00325 Bacterial regulatory proteins, crp family M481_138 PF04198 Putative sugar-binding domain M481_1380 PF00733 Asparagine synthase M481_1380 PF13537 Glutamine amidotransferase domain M481_1381 PF13344 Haloacid dehalogenase-like hydrolase M481_1382 PF01047 MarR family M481_1382 PF00480 ROK family M481_1383 PF01979 Amidohydrolase family M481_1384 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase M481_1385 PF02378 Phosphotransferase system, EIIC M481_1385 PF00367 phosphotransferase system, EIIB M481_1385 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 M481_1386 PF00749 tRNA synthetases class I (E and Q), catalytic domain M481_1386 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain M481_1387 PF03573 outer membrane porin, OprD family M481_1388 PF00728 Glycosyl hydrolase family 20, catalytic domain M481_1388 PF03174 Chitobiase/beta-hexosaminidase C-terminal domain M481_1388 PF03173 Putative carbohydrate binding domain M481_1388 PF02838 Glycosyl hydrolase family 20, domain 2 M481_1389 PF00728 Glycosyl hydrolase family 20, catalytic domain M481_1389 PF03173 Putative carbohydrate binding domain M481_1389 PF02838 Glycosyl hydrolase family 20, domain 2 M481_1389 PF03174 Chitobiase/beta-hexosaminidase C-terminal domain M481_139 PF00005 ABC transporter M481_1390 PF01475 Ferric uptake regulator family M481_1391 PF00258 Flavodoxin M481_1392 PF01402 Ribbon-helix-helix protein, copG family M481_1394 PF12697 Alpha/beta hydrolase family M481_1396 PF01527 Transposase M481_1397 PF00589 Phage integrase family M481_1397 PF13356 Arm DNA-binding domain M481_1398 PF01695 IstB-like ATP binding protein M481_14 PF02381 MraZ protein, putative antitoxin-like M481_140 PF02653 Branched-chain amino acid transport system / permease component M481_1400 PF00665 Integrase core domain M481_1400 PF02796 Helix-turn-helix domain of resolvase M481_1402 PF05973 Phage derived protein Gp49-like (DUF891) M481_141 PF02653 Branched-chain amino acid transport system / permease component M481_1412 PF13356 Arm DNA-binding domain M481_1412 PF00589 Phage integrase family M481_1414 PF01668 SmpB protein M481_1415 PF03364 Polyketide cyclase / dehydrase and lipid transport M481_1416 PF03658 RnfH family Ubiquitin M481_1417 PF04355 SmpA / OmlA family M481_1418 PF02463 RecF/RecN/SMC N terminal domain M481_1419 PF01513 ATP-NAD kinase M481_142 PF13407 Periplasmic binding protein domain M481_1420 PF01025 GrpE M481_1421 PF00285 Citrate synthase, C-terminal domain M481_1422 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit M481_1423 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit M481_1424 PF02910 Fumarate reductase flavoprotein C-term M481_1424 PF00890 FAD binding domain M481_1425 PF13085 2Fe-2S iron-sulfur cluster binding domain M481_1426 PF02779 Transketolase, pyrimidine binding domain M481_1426 PF00676 Dehydrogenase E1 component M481_1426 PF16078 2-oxoglutarate dehydrogenase N-terminus M481_1426 PF16870 2-oxoglutarate dehydrogenase C-terminal M481_1427 PF00364 Biotin-requiring enzyme M481_1427 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) M481_1427 PF02817 e3 binding domain M481_1428 PF00549 CoA-ligase M481_1428 PF08442 ATP-grasp domain M481_1429 PF02629 CoA binding domain M481_1429 PF00549 CoA-ligase M481_143 PF01791 DeoC/LacD family aldolase M481_1430 PF01797 Transposase IS200 like M481_1431 PF01654 Cytochrome bd terminal oxidase subunit I M481_1432 PF02322 Cytochrome bd terminal oxidase subunit II M481_1433 PF08173 Membrane bound YbgT-like protein M481_1434 PF09600 Cyd operon protein YbgE (Cyd_oper_YbgE) M481_1435 PF03061 Thioesterase superfamily M481_1436 PF01618 MotA/TolQ/ExbB proton channel family M481_1437 PF02472 Biopolymer transport protein ExbD/TolR M481_1438 PF06519 TolA C-terminal M481_1438 PF06519 TolA C-terminal M481_1439 PF07676 WD40-like Beta Propeller Repeat M481_1439 PF04052 TolB amino-terminal domain M481_144 PF03992 Antibiotic biosynthesis monooxygenase M481_1440 PF00691 OmpA family M481_1441 PF16331 TolA binding protein trimerisation M481_1441 PF13174 Tetratricopeptide repeat M481_1445 PF02445 Quinolinate synthetase A protein M481_1446 PF04973 Nicotinamide mononucleotide transporter M481_1447 PF01545 Cation efflux family M481_1448 PF00793 DAHP synthetase I family M481_1449 PF00793 DAHP synthetase I family M481_145 PF10696 Protein of unknown function (DUF2501) M481_1450 PF00300 Histidine phosphatase superfamily (branch 1) M481_1452 PF01263 Aldose 1-epimerase M481_1454 PF10509 Galactokinase galactose-binding signature M481_1454 PF08544 GHMP kinases C terminal M481_1454 PF00288 GHMP kinases N terminal domain M481_1455 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain M481_1455 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain M481_1456 PF16363 GDP-mannose 4,6 dehydratase M481_146 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 M481_146 PF05524 PEP-utilising enzyme, N-terminal M481_146 PF00391 PEP-utilising enzyme, mobile domain M481_146 PF00381 PTS HPr component phosphorylation site M481_146 PF02896 PEP-utilising enzyme, TIM barrel domain M481_1460 PF00005 ABC transporter M481_1461 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M481_1461 PF03459 TOBE domain M481_1462 PF10766 Multidrug efflux pump-associated protein AcrZ M481_1464 PF00528 Binding-protein-dependent transport system inner membrane component M481_1465 PF00005 ABC transporter M481_1465 PF03459 TOBE domain M481_1467 PF10282 Lactonase, 7-bladed beta-propeller M481_1468 PF00202 Aminotransferase class-III M481_1469 PF06968 Biotin and Thiamin Synthesis associated domain M481_1469 PF04055 Radical SAM superfamily M481_1470 PF00155 Aminotransferase class I and II M481_1471 PF08241 Methyltransferase domain M481_1474 PF12344 Ultra-violet resistance protein B M481_1474 PF04851 Type III restriction enzyme, res subunit M481_1474 PF00271 Helicase conserved C-terminal domain M481_1474 PF17757 UvrB interaction domain M481_1474 PF02151 UvrB/uvrC motif M481_1475 PF09905 DNA-binding protein VF530 M481_1476 PF01933 Uncharacterised protein family UPF0052 M481_1478 PF06463 Molybdenum Cofactor Synthesis C M481_1478 PF04055 Radical SAM superfamily M481_1479 PF01967 MoaC family M481_148 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit M481_1480 PF02597 ThiS family M481_1481 PF02391 MoaE protein M481_1482 PF01027 Inhibitor of apoptosis-promoting Bax1 M481_1483 PF01797 Transposase IS200 like M481_1484 PF00732 GMC oxidoreductase M481_1484 PF05199 GMC oxidoreductase M481_1485 PF00171 Aldehyde dehydrogenase family M481_1486 PF13977 BetI-type transcriptional repressor, C-terminal M481_1486 PF00440 Bacterial regulatory proteins, tetR family M481_1487 PF02028 BCCT, betaine/carnitine/choline family transporter M481_1488 PF03466 LysR substrate binding domain M481_1488 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M481_149 PF12833 Helix-turn-helix domain M481_1490 PF01048 Phosphorylase superfamily M481_1491 PF03825 Nucleoside H+ symporter M481_1494 PF01207 Dihydrouridine synthase (Dus) M481_1496 PF00768 D-alanyl-D-alanine carboxypeptidase M481_1497 PF09330 D-lactate dehydrogenase, membrane binding M481_1497 PF01565 FAD binding domain M481_1498 PF01928 CYTH domain M481_1499 PF01844 HNH endonuclease M481_15 PF06610 L-alanine exporter M481_150 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit M481_1501 PF04226 Transglycosylase associated protein M481_1502 PF00005 ABC transporter M481_1504 PF00528 Binding-protein-dependent transport system inner membrane component M481_1505 PF00528 Binding-protein-dependent transport system inner membrane component M481_1506 PF07308 Protein of unknown function (DUF1456) M481_1507 PF13188 PAS domain M481_1507 PF00158 Sigma-54 interaction domain M481_1507 PF02954 Bacterial regulatory protein, Fis family M481_1508 PF02653 Branched-chain amino acid transport system / permease component M481_1509 PF02653 Branched-chain amino acid transport system / permease component M481_1510 PF00005 ABC transporter M481_1511 PF00005 ABC transporter M481_1514 PF00581 Rhodanese-like domain M481_1515 PF04069 Substrate binding domain of ABC-type glycine betaine transport system M481_1516 PF00528 Binding-protein-dependent transport system inner membrane component M481_1517 PF00005 ABC transporter M481_1518 PF00528 Binding-protein-dependent transport system inner membrane component M481_1519 PF13520 Amino acid permease M481_152 PF05987 Bacterial protein of unknown function (DUF898) M481_1520 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain M481_1520 PF01276 Orn/Lys/Arg decarboxylase, major domain M481_1520 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain M481_1521 PF00872 Transposase, Mutator family M481_1522 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain M481_1522 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain M481_1522 PF01276 Orn/Lys/Arg decarboxylase, major domain M481_1524 PF00892 EamA-like transporter family M481_1525 PF00267 Gram-negative porin M481_1526 PF06733 DEAD_2 M481_1526 PF13307 Helicase C-terminal domain M481_1527 PF06628 Catalase-related immune-responsive M481_1527 PF00199 Catalase M481_1528 PF07437 YfaZ precursor M481_1529 PF03222 Tryptophan/tyrosine permease family M481_1530 PF00994 Probable molybdopterin binding domain M481_1531 PF03974 Ecotin M481_1532 PF00111 2Fe-2S iron-sulfur cluster binding domain M481_1533 PF00268 Ribonucleotide reductase, small chain M481_1534 PF00317 Ribonucleotide reductase, all-alpha domain M481_1534 PF03477 ATP cone domain M481_1534 PF02867 Ribonucleotide reductase, barrel domain M481_1536 PF00521 DNA gyrase/topoisomerase IV, subunit A M481_1536 PF03989 DNA gyrase C-terminal domain, beta-propeller M481_1537 PF00072 Response regulator receiver domain M481_1537 PF09456 RcsC Alpha-Beta-Loop (ABL) M481_1537 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M481_1537 PF00512 His Kinase A (phospho-acceptor) domain M481_1538 PF00072 Response regulator receiver domain M481_1538 PF00196 Bacterial regulatory proteins, luxR family M481_1539 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M481_1539 PF16359 RcsD-ABL domain M481_1539 PF01627 Hpt domain M481_1540 PF01627 Hpt domain M481_1540 PF16359 RcsD-ABL domain M481_1540 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M481_1541 PF07690 Major Facilitator Superfamily M481_1542 PF07690 Major Facilitator Superfamily M481_1544 PF00267 Gram-negative porin M481_1547 PF00144 Beta-lactamase M481_1549 PF12706 Beta-lactamase superfamily domain M481_1550 PF02743 Cache domain M481_1550 PF00672 HAMP domain M481_1550 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain M481_1551 PF01278 Omptin family M481_1553 PF06183 DinI-like family M481_1554 PF00717 Peptidase S24-like M481_1554 PF01381 Helix-turn-helix M481_1555 PF06530 Phage antitermination protein Q M481_1556 PF07005 Sugar-binding N-terminal domain M481_1556 PF17042 Nucleotide-binding C-terminal domain M481_1557 PF00596 Class II Aldolase and Adducin N-terminal domain M481_1558 PF08220 DeoR-like helix-turn-helix domain M481_1558 PF00455 DeoR C terminal sensor domain M481_1559 PF01261 Xylose isomerase-like TIM barrel M481_1563 PF04984 Phage tail sheath protein subtilisin-like domain M481_1563 PF17482 Phage tail sheath C-terminal domain M481_1572 PF04865 Baseplate J-like protein M481_1575 PF07484 Phage Tail Collar Domain M481_1576 PF01380 SIS domain M481_1576 PF01418 Helix-turn-helix domain, rpiR family M481_1578 PF00232 Glycosyl hydrolase family 1 M481_1582 PF05638 Type VI secretion system effector, Hcp M481_1585 PF00884 Sulfatase M481_1585 PF11893 Domain of unknown function (DUF3413) M481_1586 PF07208 Protein of unknown function (DUF1414) M481_1587 PF04245 37-kD nucleoid-associated bacterial protein M481_1588 PF01797 Transposase IS200 like M481_1589 PF01386 Ribosomal L25p family M481_1590 PF04851 Type III restriction enzyme, res subunit M481_1590 PF00271 Helicase conserved C-terminal domain M481_1591 PF00849 RNA pseudouridylate synthase M481_1591 PF01479 S4 domain M481_1592 PF07690 Major Facilitator Superfamily M481_1593 PF13989 YejG-like protein M481_1594 PF00005 ABC transporter M481_1594 PF08352 Oligopeptide/dipeptide transporter, C-terminal region M481_1595 PF12911 N-terminal TM domain of oligopeptide transport permease C M481_1595 PF00528 Binding-protein-dependent transport system inner membrane component M481_1596 PF00528 Binding-protein-dependent transport system inner membrane component M481_1597 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle M481_1598 PF00563 EAL domain M481_1598 PF12792 CSS motif domain associated with EAL M481_160 PF01555 DNA methylase M481_1600 PF00877 NlpC/P60 family M481_1601 PF01569 PAP2 superfamily M481_1602 PF02492 CobW/HypB/UreG, nucleotide-binding domain M481_1602 PF07683 Cobalamin synthesis protein cobW C-terminal domain M481_1604 PF07729 FCD domain M481_1604 PF00392 Bacterial regulatory proteins, gntR family M481_1605 PF01232 Mannitol dehydrogenase Rossmann domain M481_1605 PF08125 Mannitol dehydrogenase C-terminal domain M481_1606 PF03786 D-mannonate dehydratase (UxuA) M481_1607 PF09285 Elongation factor P, C-terminal M481_1607 PF01132 Elongation factor P (EF-P) OB domain M481_1607 PF08207 Elongation factor P (EF-P) KOW-like domain M481_1608 PF03222 Tryptophan/tyrosine permease family M481_1609 PF03692 Putative zinc- or iron-chelating domain M481_161 PF01527 Transposase M481_1611 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain M481_1611 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain M481_1611 PF01842 ACT domain M481_1613 PF00171 Aldehyde dehydrogenase family M481_1614 PF02782 FGGY family of carbohydrate kinases, C-terminal domain M481_1614 PF00370 FGGY family of carbohydrate kinases, N-terminal domain M481_1615 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) M481_1617 PF00005 ABC transporter M481_1618 PF02653 Branched-chain amino acid transport system / permease component M481_1619 PF00293 NUDIX domain M481_1620 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 M481_1620 PF00381 PTS HPr component phosphorylation site M481_1621 PF00294 pfkB family carbohydrate kinase M481_1622 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit M481_1622 PF02378 Phosphotransferase system, EIIC M481_1623 PF00486 Transcriptional regulatory protein, C terminal M481_1624 PF17550 Family of unknown function M481_1626 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain M481_1626 PF02753 Pili assembly chaperone PapD, C-terminal domain M481_1627 PF13954 PapC N-terminal domain M481_1627 PF13953 PapC C-terminal domain M481_1627 PF00577 Outer membrane usher protein M481_1628 PF01261 Xylose isomerase-like TIM barrel M481_1629 PF03601 Conserved hypothetical protein 698 M481_163 PF07728 AAA domain (dynein-related subfamily) M481_163 PF12102 Domain of unknown function (DUF3578) M481_1630 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M481_1630 PF03466 LysR substrate binding domain M481_1632 PF00324 Amino acid permease M481_1635 PF01032 FecCD transport family M481_1636 PF00005 ABC transporter M481_1637 PF07715 TonB-dependent Receptor Plug Domain M481_1637 PF00593 TonB dependent receptor M481_1638 PF13417 Glutathione S-transferase, N-terminal domain M481_1638 PF00043 Glutathione S-transferase, C-terminal domain M481_164 PF00665 Integrase core domain M481_164 PF02796 Helix-turn-helix domain of resolvase M481_1642 PF03180 NLPA lipoprotein M481_1643 PF00005 ABC transporter M481_1643 PF09383 NIL domain M481_1644 PF00528 Binding-protein-dependent transport system inner membrane component M481_1645 PF00768 D-alanyl-D-alanine carboxypeptidase M481_1645 PF07943 Penicillin-binding protein 5, C-terminal domain M481_1647 PF00455 DeoR C terminal sensor domain M481_1647 PF08220 DeoR-like helix-turn-helix domain M481_1648 PF01791 DeoC/LacD family aldolase M481_1649 PF01569 PAP2 superfamily M481_165 PF01695 IstB-like ATP binding protein M481_1651 PF02080 TrkA-C domain M481_1651 PF06826 Predicted Permease Membrane Region M481_1652 PF00462 Glutaredoxin M481_1653 PF07214 Protein of unknown function (DUF1418) M481_1654 PF10722 Putative bacterial sensory transduction regulator M481_1655 PF13416 Bacterial extracellular solute-binding protein M481_1656 PF08402 TOBE domain M481_1656 PF00005 ABC transporter M481_1657 PF00528 Binding-protein-dependent transport system inner membrane component M481_1658 PF00528 Binding-protein-dependent transport system inner membrane component M481_1659 PF10767 Protein of unknown function (DUF2593) M481_166 PF01119 DNA mismatch repair protein, C-terminal domain M481_166 PF08676 MutL C terminal dimerisation domain M481_1660 PF05958 tRNA (Uracil-5-)-methyltransferase M481_1661 PF00497 Bacterial extracellular solute-binding proteins, family 3 M481_1666 PF01032 FecCD transport family M481_1667 PF00005 ABC transporter M481_1668 PF03059 Nicotianamine synthase protein M481_1669 PF10100 Staphylopine dehydrogenase M481_1670 PF00892 EamA-like transporter family M481_1671 PF00528 Binding-protein-dependent transport system inner membrane component M481_1672 PF00528 Binding-protein-dependent transport system inner membrane component M481_1673 PF00497 Bacterial extracellular solute-binding proteins, family 3 M481_1674 PF00005 ABC transporter M481_1675 PF01817 Chorismate mutase type II M481_1676 PF12883 Protein of unknown function (DUF3828) M481_1677 PF01370 NAD dependent epimerase/dehydratase family M481_1678 PF13460 NAD(P)H-binding M481_1678 PF11066 Protein of unknown function (DUF2867) M481_1679 PF01212 Beta-eliminating lyase M481_168 PF00589 Phage integrase family M481_168 PF13356 Arm DNA-binding domain M481_1680 PF00205 Thiamine pyrophosphate enzyme, central domain M481_1680 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain M481_1680 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain M481_1681 PF00970 Oxidoreductase FAD-binding domain M481_1681 PF00111 2Fe-2S iron-sulfur cluster binding domain M481_1681 PF00175 Oxidoreductase NAD-binding domain M481_1682 PF03063 Prismane/CO dehydrogenase family M481_1683 PF03956 Lysine exporter LysO M481_1684 PF11398 Protein of unknown function (DUF2813) M481_1685 PF04393 Protein of unknown function (DUF535) M481_1686 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion M481_1687 PF00005 ABC transporter M481_1687 PF02687 FtsX-like permease family M481_1687 PF12704 MacB-like periplasmic core domain M481_1688 PF00313 'Cold-shock' DNA-binding domain M481_1689 PF02617 ATP-dependent Clp protease adaptor protein ClpS M481_1690 PF00004 ATPase family associated with various cellular activities (AAA) M481_1690 PF07724 AAA domain (Cdc48 subfamily) M481_1690 PF02861 Clp amino terminal domain, pathogenicity island component M481_1690 PF17871 AAA lid domain M481_1690 PF10431 C-terminal, D2-small domain, of ClpB protein M481_1692 PF01176 Translation initiation factor 1A / IF-1 M481_1693 PF03588 Leucyl/phenylalanyl-tRNA protein transferase M481_1694 PF00005 ABC transporter M481_1694 PF00664 ABC transporter transmembrane region M481_1695 PF00005 ABC transporter M481_1695 PF00664 ABC transporter transmembrane region M481_1696 PF07992 Pyridine nucleotide-disulphide oxidoreductase M481_1697 PF01037 Lrp/AsnC ligand binding domain M481_1698 PF13491 4TM region of DNA translocase FtsK/SpoIIIE M481_1698 PF09397 Ftsk gamma domain M481_1698 PF01580 FtsK/SpoIIIE family M481_1698 PF17854 FtsK alpha domain M481_1699 PF03548 Outer membrane lipoprotein carrier protein LolA M481_17 PF00356 Bacterial regulatory proteins, lacI family M481_17 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family M481_170 PF03739 Lipopolysaccharide export system permease LptF/LptG M481_1701 PF12002 MgsA AAA+ ATPase C terminal M481_1701 PF16193 AAA C-terminal domain M481_1701 PF00004 ATPase family associated with various cellular activities (AAA) M481_1702 PF02403 Seryl-tRNA synthetase N-terminal domain M481_1702 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) M481_1703 PF07690 Major Facilitator Superfamily M481_1704 PF04055 Radical SAM superfamily M481_1706 PF02901 Pyruvate formate lyase-like M481_1706 PF01228 Glycine radical M481_1707 PF01226 Formate/nitrite transporter M481_1708 PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding M481_1708 PF18381 YcaO cyclodehydratase C-terminal domain M481_1709 PF17763 Glutaminase/Asparaginase C-terminal domain M481_1709 PF00710 Asparaginase, N-terminal M481_171 PF03739 Lipopolysaccharide export system permease LptF/LptG M481_1710 PF05662 Coiled stalk of trimeric autotransporter adhesin M481_1710 PF13018 Extended Signal Peptide of Type V secretion system M481_1710 PF05662 Coiled stalk of trimeric autotransporter adhesin M481_1710 PF05658 Head domain of trimeric autotransporter adhesin M481_1710 PF03895 YadA-like membrane anchor domain M481_1710 PF13018 Extended Signal Peptide of Type V secretion system M481_1710 PF05658 Head domain of trimeric autotransporter adhesin M481_1710 PF03895 YadA-like membrane anchor domain M481_1712 PF00266 Aminotransferase class-V M481_1713 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) M481_1714 PF02224 Cytidylate kinase M481_1715 PF00575 S1 RNA binding domain M481_1717 PF00216 Bacterial DNA-binding protein M481_1718 PF00753 Metallo-beta-lactamase superfamily M481_1718 PF03772 Competence protein M481_1719 PF00005 ABC transporter M481_1719 PF00664 ABC transporter transmembrane region M481_172 PF02789 Cytosol aminopeptidase family, N-terminal domain M481_172 PF00883 Cytosol aminopeptidase family, catalytic domain M481_1720 PF02606 Tetraacyldisaccharide-1-P 4'-kinase M481_1721 PF07063 Domain of unknown function (DUF1338) M481_1722 PF00313 'Cold-shock' DNA-binding domain M481_1723 PF03966 Trm112p-like protein M481_1724 PF02348 Cytidylyltransferase M481_1725 PF01636 Phosphotransferase enzyme family M481_1727 PF17193 MukF C-terminal domain M481_1727 PF03882 MukF winged-helix domain M481_1727 PF17192 MukF middle domain M481_1728 PF04288 MukE-like family M481_1729 PF04310 MukB N-terminal M481_1729 PF16330 MukB hinge domain M481_173 PF04364 DNA polymerase III chi subunit, HolC M481_1731 PF03734 L,D-transpeptidase catalytic domain M481_1731 PF01471 Putative peptidoglycan binding domain M481_1732 PF05951 Bacterial protein of unknown function (DUF882) M481_1733 PF00753 Metallo-beta-lactamase superfamily M481_1734 PF00155 Aminotransferase class I and II M481_1735 PF00267 Gram-negative porin M481_1736 PF01336 OB-fold nucleic acid binding domain M481_1736 PF00152 tRNA synthetases class II (D, K and N) M481_1737 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain M481_1737 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family M481_1738 PF11940 Domain of unknown function (DUF3458) Ig-like fold M481_1738 PF01433 Peptidase family M1 domain M481_1738 PF17432 Domain of unknown function (DUF3458_C) ARM repeats M481_1739 PF01180 Dihydroorotate dehydrogenase M481_174 PF00133 tRNA synthetases class I (I, L, M and V) M481_174 PF08264 Anticodon-binding domain of tRNA M481_174 PF10458 Valyl tRNA synthetase tRNA binding arm M481_1740 PF07126 Cell-division protein ZapC M481_1741 PF03476 MOSC N-terminal beta barrel domain M481_1741 PF03473 MOSC domain M481_1741 PF00111 2Fe-2S iron-sulfur cluster binding domain M481_1742 PF10672 S-adenosylmethionine-dependent methyltransferase M481_1742 PF02926 THUMP domain M481_1742 PF01170 Putative RNA methylase family UPF0020 M481_1743 PF00005 ABC transporter M481_1743 PF12848 ABC transporter M481_1743 PF16326 ABC transporter C-terminal domain M481_1744 PF04403 Paraquat-inducible protein A M481_1745 PF02470 MlaD protein M481_1746 PF03886 ABC-type transport auxiliary lipoprotein component M481_1747 PF01797 Transposase IS200 like M481_1748 PF12838 4Fe-4S dicluster domain M481_1749 PF01418 Helix-turn-helix domain, rpiR family M481_1749 PF01380 SIS domain M481_175 PF00583 Acetyltransferase (GNAT) family M481_1750 PF01380 SIS domain M481_1752 PF14437 MafB19-like deaminase M481_1753 PF01464 Transglycosylase SLT domain M481_1753 PF00497 Bacterial extracellular solute-binding proteins, family 3 M481_1754 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain M481_1754 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal M481_1754 PF02769 AIR synthase related protein, C-terminal domain M481_1758 PF01797 Transposase IS200 like M481_1759 PF00512 His Kinase A (phospho-acceptor) domain M481_1759 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M481_176 PF06877 Regulator of ribonuclease activity B M481_1760 PF13942 YfhG lipoprotein M481_1761 PF00072 Response regulator receiver domain M481_1761 PF00158 Sigma-54 interaction domain M481_1762 PF00795 Carbon-nitrogen hydrolase M481_1762 PF02540 NAD synthase M481_1763 PF00543 Nitrogen regulatory protein P-II M481_1764 PF14503 YhfZ C-terminal domain M481_1764 PF14502 Helix-turn-helix domain M481_1765 PF01695 IstB-like ATP binding protein M481_1766 PF02796 Helix-turn-helix domain of resolvase M481_1766 PF00665 Integrase core domain M481_1767 PF00042 Globin M481_1767 PF00175 Oxidoreductase NAD-binding domain M481_1767 PF00970 Oxidoreductase FAD-binding domain M481_1768 PF00464 Serine hydroxymethyltransferase M481_1769 PF13505 Outer membrane protein beta-barrel domain M481_177 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain M481_177 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain M481_1770 PF00874 PRD domain M481_1771 PF12832 MFS_1 like family M481_1772 PF06226 Protein of unknown function (DUF1007) M481_1773 PF03824 High-affinity nickel-transport protein M481_1774 PF00459 Inositol monophosphatase family M481_1775 PF00588 SpoU rRNA Methylase family M481_1776 PF02082 Transcriptional regulator M481_1777 PF00266 Aminotransferase class-V M481_1778 PF01592 NifU-like N terminal domain M481_1779 PF01521 Iron-sulphur cluster biosynthesis M481_178 PF04074 YhcH/YjgK/YiaL M481_1780 PF00226 DnaJ domain M481_1780 PF07743 HSCB C-terminal oligomerisation domain M481_1781 PF00012 Hsp70 protein M481_1782 PF00111 2Fe-2S iron-sulfur cluster binding domain M481_1783 PF04384 Iron-sulphur cluster assembly M481_1784 PF12404 Peptidase M481_1784 PF00883 Cytosol aminopeptidase family, catalytic domain M481_1785 PF14581 SseB protein C-terminal domain M481_1785 PF07179 SseB protein N-terminal domain M481_1787 PF16168 Adhesin of bacterial autotransporter system, probable stalk M481_1787 PF03797 Autotransporter beta-domain M481_1787 PF03212 Pertactin M481_1788 PF16168 Adhesin of bacterial autotransporter system, probable stalk M481_1788 PF03797 Autotransporter beta-domain M481_1788 PF03212 Pertactin M481_1790 PF00334 Nucleoside diphosphate kinase M481_1791 PF04055 Radical SAM superfamily M481_1793 PF13464 Domain of unknown function (DUF4115) M481_1794 PF04551 GcpE protein M481_1795 PF13393 Histidyl-tRNA synthetase M481_1795 PF03129 Anticodon binding domain M481_1796 PF09976 Tetratricopeptide repeat-like domain M481_1797 PF13360 PQQ-like domain M481_1798 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal M481_1798 PF01926 50S ribosome-binding GTPase M481_18 PF01797 Transposase IS200 like M481_1800 PF07191 zinc-ribbons M481_1801 PF02601 Exonuclease VII, large subunit M481_1801 PF13742 OB-fold nucleic acid binding domain M481_1802 PF00571 CBS domain M481_1802 PF00478 IMP dehydrogenase / GMP reductase domain M481_1803 PF00958 GMP synthase C terminal domain M481_1803 PF02540 NAD synthase M481_1803 PF00117 Glutamine amidotransferase class-I M481_1804 PF01797 Transposase IS200 like M481_1805 PF05638 Type VI secretion system effector, Hcp M481_181 PF00528 Binding-protein-dependent transport system inner membrane component M481_1811 PF00872 Transposase, Mutator family M481_1814 PF08543 Phosphomethylpyrimidine kinase M481_1817 PF00781 Diacylglycerol kinase catalytic domain M481_1819 PF07411 Domain of unknown function (DUF1508) M481_182 PF00528 Binding-protein-dependent transport system inner membrane component M481_182 PF12911 N-terminal TM domain of oligopeptide transport permease C M481_1820 PF00486 Transcriptional regulatory protein, C terminal M481_1820 PF00072 Response regulator receiver domain M481_1821 PF00672 HAMP domain M481_1821 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M481_1821 PF00512 His Kinase A (phospho-acceptor) domain M481_1822 PF07690 Major Facilitator Superfamily M481_1823 PF00873 AcrB/AcrD/AcrF family M481_1824 PF00873 AcrB/AcrD/AcrF family M481_1825 PF00873 AcrB/AcrD/AcrF family M481_1826 PF13533 Biotin-lipoyl like M481_1827 PF08402 TOBE domain M481_1827 PF00005 ABC transporter M481_1828 PF00155 Aminotransferase class I and II M481_1828 PF00392 Bacterial regulatory proteins, gntR family M481_1829 PF00202 Aminotransferase class-III M481_183 PF00005 ABC transporter M481_183 PF08352 Oligopeptide/dipeptide transporter, C-terminal region M481_1831 PF00528 Binding-protein-dependent transport system inner membrane component M481_1832 PF00528 Binding-protein-dependent transport system inner membrane component M481_1833 PF00012 Hsp70 protein M481_1834 PF00571 CBS domain M481_1834 PF01769 Divalent cation transporter M481_1834 PF03448 MgtE intracellular N domain M481_1835 PF02541 Ppx/GppA phosphatase family M481_1836 PF13090 Polyphosphate kinase C-terminal domain 2 M481_1836 PF02503 Polyphosphate kinase middle domain M481_1836 PF13089 Polyphosphate kinase N-terminal domain M481_1836 PF17941 Polyphosphate kinase C-terminal domain 1 M481_1837 PF00528 Binding-protein-dependent transport system inner membrane component M481_1838 PF00528 Binding-protein-dependent transport system inner membrane component M481_1839 PF00005 ABC transporter M481_184 PF00005 ABC transporter M481_184 PF08352 Oligopeptide/dipeptide transporter, C-terminal region M481_1842 PF13302 Acetyltransferase (GNAT) domain M481_1843 PF00551 Formyl transferase M481_1844 PF00586 AIR synthase related protein, N-terminal domain M481_1844 PF02769 AIR synthase related protein, C-terminal domain M481_1846 PF01797 Transposase IS200 like M481_1847 PF00308 Bacterial dnaA protein M481_1848 PF03960 ArsC family M481_1849 PF01435 Peptidase family M48 M481_1849 PF07720 Tetratricopeptide repeat M481_185 PF03477 ATP cone domain M481_185 PF13597 Anaerobic ribonucleoside-triphosphate reductase M481_1850 PF01594 AI-2E family transporter M481_1853 PF00578 AhpC/TSA family M481_1854 PF01842 ACT domain M481_1855 PF00701 Dihydrodipicolinate synthetase family M481_1856 PF06804 NlpB/DapX lipoprotein M481_1857 PF01797 Transposase IS200 like M481_1858 PF01259 SAICAR synthetase M481_1859 PF04228 Putative neutral zinc metallopeptidase M481_1860 PF04284 Protein of unknown function (DUF441) M481_1861 PF05127 Helicase M481_1861 PF13718 GNAT acetyltransferase 2 M481_1861 PF08351 Domain of unknown function (DUF1726) M481_1861 PF17176 tRNA-binding domain M481_1862 PF13980 Uncharacterised protein family (UPF0370) M481_1863 PF02557 D-alanyl-D-alanine carboxypeptidase M481_1864 PF07687 Peptidase dimerisation domain M481_1864 PF01546 Peptidase family M20/M25/M40 M481_1865 PF03960 ArsC family M481_1868 PF00528 Binding-protein-dependent transport system inner membrane component M481_1869 PF08402 TOBE domain M481_1869 PF00005 ABC transporter M481_1870 PF00884 Sulfatase M481_1871 PF04055 Radical SAM superfamily M481_1871 PF13186 Iron-sulfur cluster-binding domain M481_1872 PF04307 LexA-binding, inner membrane-associated putative hydrolase M481_1874 PF00873 AcrB/AcrD/AcrF family M481_1876 PF00072 Response regulator receiver domain M481_1876 PF00196 Bacterial regulatory proteins, luxR family M481_1877 PF12800 4Fe-4S binding domain M481_1877 PF00037 4Fe-4S binding domain M481_1877 PF13187 4Fe-4S dicluster domain M481_1878 PF03927 NapD protein M481_1879 PF10518 TAT (twin-arginine translocation) pathway signal sequence M481_1879 PF01568 Molydopterin dinucleotide binding domain M481_1879 PF04879 Molybdopterin oxidoreductase Fe4S4 domain M481_1879 PF00384 Molybdopterin oxidoreductase M481_188 PF00392 Bacterial regulatory proteins, gntR family M481_188 PF07702 UTRA domain M481_1880 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) M481_1881 PF03264 NapC/NirT cytochrome c family, N-terminal region M481_1882 PF00293 NUDIX domain M481_1883 PF01515 Phosphate acetyl/butaryl transferase M481_1883 PF00390 Malic enzyme, N-terminal domain M481_1883 PF03949 Malic enzyme, NAD binding domain M481_1884 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 M481_1885 PF01218 Coproporphyrinogen III oxidase M481_1886 PF00583 Acetyltransferase (GNAT) family M481_1889 PF01797 Transposase IS200 like M481_189 PF06754 Phosphonate metabolism protein PhnG M481_1890 PF13018 Extended Signal Peptide of Type V secretion system M481_1890 PF16168 Adhesin of bacterial autotransporter system, probable stalk M481_1890 PF03797 Autotransporter beta-domain M481_1890 PF03212 Pertactin M481_1891 PF04076 Bacterial OB fold (BOF) protein M481_1893 PF06572 Protein of unknown function (DUF1131) M481_1894 PF04261 Dyp-type peroxidase family M481_1895 PF00701 Dihydrodipicolinate synthetase family M481_1896 PF04131 Putative N-acetylmannosamine-6-phosphate epimerase M481_1897 PF12468 Type III secretion system leucine rich repeat protein M481_1898 PF00480 ROK family M481_1899 PF04074 YhcH/YjgK/YiaL M481_19 PF10369 Small subunit of acetolactate synthase M481_190 PF05845 Bacterial phosphonate metabolism protein (PhnH) M481_1900 PF01380 SIS domain M481_1900 PF01418 Helix-turn-helix domain, rpiR family M481_1901 PF07690 Major Facilitator Superfamily M481_1903 PF00528 Binding-protein-dependent transport system inner membrane component M481_1904 PF00528 Binding-protein-dependent transport system inner membrane component M481_1905 PF00005 ABC transporter M481_1906 PF00291 Pyridoxal-phosphate dependent enzyme M481_1908 PF00486 Transcriptional regulatory protein, C terminal M481_1908 PF00072 Response regulator receiver domain M481_1909 PF00672 HAMP domain M481_1909 PF00512 His Kinase A (phospho-acceptor) domain M481_1909 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M481_191 PF05861 Bacterial phosphonate metabolism protein (PhnI) M481_1911 PF00155 Aminotransferase class I and II M481_1913 PF05195 Aminopeptidase P, N-terminal domain M481_1913 PF00557 Metallopeptidase family M24 M481_1915 PF00474 Sodium:solute symporter family M481_1916 PF07992 Pyridine nucleotide-disulphide oxidoreductase M481_1916 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain M481_1917 PF00005 ABC transporter M481_1917 PF02687 FtsX-like permease family M481_1917 PF12704 MacB-like periplasmic core domain M481_1918 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion M481_1919 PF00486 Transcriptional regulatory protein, C terminal M481_1919 PF00072 Response regulator receiver domain M481_192 PF06007 Phosphonate metabolism protein PhnJ M481_1920 PF16527 Two-component sensor protein CpxA, periplasmic domain M481_1920 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M481_1920 PF00512 His Kinase A (phospho-acceptor) domain M481_1920 PF00672 HAMP domain M481_1923 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 M481_1924 PF00391 PEP-utilising enzyme, mobile domain M481_1924 PF02896 PEP-utilising enzyme, TIM barrel domain M481_1924 PF05524 PEP-utilising enzyme, N-terminal M481_1925 PF00381 PTS HPr component phosphorylation site M481_1926 PF00291 Pyridoxal-phosphate dependent enzyme M481_1928 PF04354 ZipA, C-terminal FtsZ-binding domain M481_1929 PF12826 Helix-hairpin-helix motif M481_1929 PF03120 NAD-dependent DNA ligase OB-fold domain M481_1929 PF03119 NAD-dependent DNA ligase C4 zinc finger domain M481_1929 PF01653 NAD-dependent DNA ligase adenylation domain M481_1929 PF00533 BRCA1 C Terminus (BRCT) domain M481_193 PF00005 ABC transporter M481_1930 PF12843 Putative quorum-sensing-regulated virulence factor M481_1933 PF01797 Transposase IS200 like M481_1935 PF00749 tRNA synthetases class I (E and Q), catalytic domain M481_194 PF00005 ABC transporter M481_1940 PF01773 Na+ dependent nucleoside transporter N-terminus M481_1940 PF07662 Na+ dependent nucleoside transporter C-terminus M481_1940 PF07670 Nucleoside recognition M481_1941 PF01566 Natural resistance-associated macrophage protein M481_1943 PF00248 Aldo/keto reductase family M481_1944 PF03466 LysR substrate binding domain M481_1944 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M481_1946 PF02685 Glucokinase M481_1947 PF07350 Protein of unknown function (DUF1479) M481_1948 PF00155 Aminotransferase class I and II M481_1949 PF01292 Prokaryotic cytochrome b561 M481_195 PF07969 Amidohydrolase family M481_1951 PF03783 Curli production assembly/transport component CsgG M481_1953 PF05643 Putative bacterial lipoprotein (DUF799) M481_1955 PF02613 Nitrate reductase delta subunit M481_1956 PF04976 DMSO reductase anchor subunit (DmsC) M481_1957 PF13247 4Fe-4S dicluster domain M481_1957 PF12800 4Fe-4S binding domain M481_1958 PF04879 Molybdopterin oxidoreductase Fe4S4 domain M481_1958 PF00384 Molybdopterin oxidoreductase M481_1958 PF01568 Molydopterin dinucleotide binding domain M481_1960 PF05638 Type VI secretion system effector, Hcp M481_1962 PF00005 ABC transporter M481_1963 PF00528 Binding-protein-dependent transport system inner membrane component M481_1965 PF13406 Transglycosylase SLT domain M481_197 PF12706 Beta-lactamase superfamily domain M481_1975 PF10431 C-terminal, D2-small domain, of ClpB protein M481_1975 PF17871 AAA lid domain M481_1975 PF07724 AAA domain (Cdc48 subfamily) M481_1975 PF00004 ATPase family associated with various cellular activities (AAA) M481_1976 PF16970 Type-1 fimbrial protein, A M481_1977 PF02753 Pili assembly chaperone PapD, C-terminal domain M481_1977 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain M481_1978 PF00577 Outer membrane usher protein M481_1978 PF13954 PapC N-terminal domain M481_1978 PF13953 PapC C-terminal domain M481_1979 PF00872 Transposase, Mutator family M481_198 PF13460 NAD(P)H-binding M481_1980 PF00577 Outer membrane usher protein M481_1980 PF13953 PapC C-terminal domain M481_1980 PF13954 PapC N-terminal domain M481_1988 PF02796 Helix-turn-helix domain of resolvase M481_1988 PF00665 Integrase core domain M481_1990 PF01695 IstB-like ATP binding protein M481_1994 PF04717 Type VI secretion system, phage-baseplate injector M481_2 PF08478 POTRA domain, FtsQ-type M481_2 PF03799 Cell division protein FtsQ M481_20 PF00205 Thiamine pyrophosphate enzyme, central domain M481_20 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain M481_20 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain M481_2000 PF08274 PhnA Zinc-Ribbon M481_2000 PF03831 PhnA domain M481_2002 PF04011 LemA family M481_2005 PF00005 ABC transporter M481_2006 PF03379 CcmB protein M481_2007 PF01578 Cytochrome C assembly protein M481_2008 PF04995 Heme exporter protein D (CcmD) M481_2009 PF03100 CcmE M481_201 PF00005 ABC transporter M481_201 PF17912 MalK OB fold domain M481_201 PF03459 TOBE domain M481_2010 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal M481_2010 PF01578 Cytochrome C assembly protein M481_2011 PF08534 Redoxin M481_2012 PF03918 Cytochrome C biogenesis protein M481_2013 PF03918 Cytochrome C biogenesis protein M481_2014 PF04333 MlaA lipoprotein M481_2015 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) M481_2016 PF04175 Protein of unknown function (DUF406) M481_2017 PF00108 Thiolase, N-terminal domain M481_2017 PF02803 Thiolase, C-terminal domain M481_2018 PF00378 Enoyl-CoA hydratase/isomerase M481_2018 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain M481_2018 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain M481_2019 PF00300 Histidine phosphatase superfamily (branch 1) M481_202 PF00528 Binding-protein-dependent transport system inner membrane component M481_2020 PF01713 Smr domain M481_2021 PF05175 Methyltransferase small domain M481_2022 PF01264 Chorismate synthase M481_2023 PF03411 Penicillin-insensitive murein endopeptidase M481_2024 PF01925 Sulfite exporter TauE/SafE M481_2025 PF04315 Elongation factor P hydroxylase M481_2026 PF08891 YfcL protein M481_2027 PF01266 FAD dependent oxidoreductase M481_2027 PF05430 S-adenosyl-L-methionine-dependent methyltransferase M481_2028 PF02801 Beta-ketoacyl synthase, C-terminal domain M481_2028 PF00109 Beta-ketoacyl synthase, N-terminal domain M481_2029 PF01177 Asp/Glu/Hydantoin racemase M481_2030 PF00419 Fimbrial protein M481_2032 PF00892 EamA-like transporter family M481_2034 PF11890 Domain of unknown function (DUF3410) M481_2034 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain M481_2034 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain M481_2035 PF01118 Semialdehyde dehydrogenase, NAD binding domain M481_2035 PF02774 Semialdehyde dehydrogenase, dimerisation domain M481_2036 PF01416 tRNA pseudouridine synthase M481_2037 PF09335 SNARE associated Golgi protein M481_2038 PF17848 Acetyl-coA carboxylase zinc finger domain M481_2038 PF01039 Carboxyl transferase domain M481_2039 PF08245 Mur ligase middle domain M481_2039 PF02875 Mur ligase family, glutamate ligase domain M481_204 PF13416 Bacterial extracellular solute-binding protein M481_2040 PF05036 Sporulation related domain M481_2041 PF02674 Colicin V production protein M481_2042 PF00156 Phosphoribosyl transferase domain M481_2043 PF02441 Flavoprotein M481_2044 PF00497 Bacterial extracellular solute-binding proteins, family 3 M481_2045 PF00528 Binding-protein-dependent transport system inner membrane component M481_2046 PF00528 Binding-protein-dependent transport system inner membrane component M481_2047 PF00005 ABC transporter M481_2048 PF08338 Domain of unknown function (DUF1731) M481_2048 PF01370 NAD dependent epimerase/dehydratase family M481_2050 PF12850 Calcineurin-like phosphoesterase superfamily domain M481_2051 PF12850 Calcineurin-like phosphoesterase superfamily domain M481_2052 PF00293 NUDIX domain M481_2053 PF03611 PTS system sugar-specific permease component M481_2055 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 M481_2056 PF00356 Bacterial regulatory proteins, lacI family M481_2056 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family M481_2057 PF01515 Phosphate acetyl/butaryl transferase M481_2057 PF07085 DRTGG domain M481_2058 PF00871 Acetokinase family M481_2059 PF04217 Protein of unknown function, DUF412 M481_2060 PF03887 YfbU domain M481_2061 PF13419 Haloacid dehalogenase-like hydrolase M481_2062 PF02080 TrkA-C domain M481_2062 PF03600 Citrate transporter M481_2064 PF00155 Aminotransferase class I and II M481_2065 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M481_2065 PF03466 LysR substrate binding domain M481_2066 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 M481_2067 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit M481_2068 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit M481_2068 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit M481_207 PF01541 GIY-YIG catalytic domain M481_2070 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit M481_2070 PF10531 SLBB domain M481_2070 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region M481_2071 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region M481_2071 PF04879 Molybdopterin oxidoreductase Fe4S4 domain M481_2071 PF01568 Molydopterin dinucleotide binding domain M481_2071 PF00384 Molybdopterin oxidoreductase M481_2072 PF00146 NADH dehydrogenase M481_2073 PF12838 4Fe-4S dicluster domain M481_2074 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 M481_2075 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L M481_2076 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus M481_2076 PF00361 Proton-conducting membrane transporter M481_2077 PF00361 Proton-conducting membrane transporter M481_2078 PF00361 Proton-conducting membrane transporter M481_208 PF13508 Acetyltransferase (GNAT) domain M481_2080 PF04074 YhcH/YjgK/YiaL M481_2081 PF01202 Shikimate kinase M481_2082 PF00106 short chain dehydrogenase M481_2084 PF00356 Bacterial regulatory proteins, lacI family M481_2085 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain M481_2085 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain M481_2086 PF07690 Major Facilitator Superfamily M481_2087 PF03928 Haem-degrading M481_2088 PF00920 Dehydratase family M481_2090 PF05957 Bacterial protein of unknown function (DUF883) M481_2092 PF00425 chorismate binding enzyme M481_2093 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain M481_2093 PF16582 Middle domain of thiamine pyrophosphate M481_2093 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain M481_2094 PF12697 Alpha/beta hydrolase family M481_2095 PF00378 Enoyl-CoA hydratase/isomerase M481_2096 PF13378 Enolase C-terminal domain-like M481_2097 PF13193 AMP-binding enzyme C-terminal domain M481_2097 PF00501 AMP-binding enzyme M481_2098 PF02885 Glycosyl transferase family, helical bundle domain M481_2099 PF07338 Protein of unknown function (DUF1471) M481_21 PF00872 Transposase, Mutator family M481_2100 PF05971 RNA methyltransferase M481_2101 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain M481_2101 PF13426 PAS domain M481_2101 PF08447 PAS fold M481_2102 PF00005 ABC transporter M481_2103 PF00528 Binding-protein-dependent transport system inner membrane component M481_2104 PF00497 Bacterial extracellular solute-binding proteins, family 3 M481_2106 PF00210 Ferritin-like domain M481_2107 PF13649 Methyltransferase domain M481_2109 PF00892 EamA-like transporter family M481_2110 PF13505 Outer membrane protein beta-barrel domain M481_2114 PF08240 Alcohol dehydrogenase GroES-like domain M481_2114 PF00107 Zinc-binding dehydrogenase M481_2115 PF13407 Periplasmic binding protein domain M481_2116 PF00005 ABC transporter M481_2117 PF00005 ABC transporter M481_2118 PF02653 Branched-chain amino acid transport system / permease component M481_2119 PF00356 Bacterial regulatory proteins, lacI family M481_212 PF02321 Outer membrane efflux protein M481_212 PF08139 Prokaryotic membrane lipoprotein lipid attachment site M481_2120 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M481_2120 PF03466 LysR substrate binding domain M481_2121 PF00180 Isocitrate/isopropylmalate dehydrogenase M481_2122 PF02028 BCCT, betaine/carnitine/choline family transporter M481_2123 PF00848 Ring hydroxylating alpha subunit (catalytic domain) M481_2123 PF00355 Rieske [2Fe-2S] domain M481_2124 PF00111 2Fe-2S iron-sulfur cluster binding domain M481_2124 PF00970 Oxidoreductase FAD-binding domain M481_2124 PF00175 Oxidoreductase NAD-binding domain M481_2125 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB M481_2125 PF08479 POTRA domain, ShlB-type M481_2125 PF17287 POTRA domain M481_2126 PF04829 Pre-toxin domain with VENN motif M481_2126 PF05860 haemagglutination activity domain M481_2126 PF13332 Hemagglutinin repeat M481_2126 PF13018 Extended Signal Peptide of Type V secretion system M481_2129 PF04829 Pre-toxin domain with VENN motif M481_2129 PF13018 Extended Signal Peptide of Type V secretion system M481_2129 PF05860 haemagglutination activity domain M481_2129 PF13332 Hemagglutinin repeat M481_213 PF00873 AcrB/AcrD/AcrF family M481_2133 PF05860 haemagglutination activity domain M481_2133 PF15526 Novel toxin 21 M481_2133 PF05594 Haemagluttinin repeat M481_2133 PF04829 Pre-toxin domain with VENN motif M481_2133 PF13332 Hemagglutinin repeat M481_2135 PF00005 ABC transporter M481_2135 PF17912 MalK OB fold domain M481_2136 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain M481_2136 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III M481_2136 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II M481_2136 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I M481_2137 PF00356 Bacterial regulatory proteins, lacI family M481_2139 PF00528 Binding-protein-dependent transport system inner membrane component M481_214 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion M481_214 PF00529 HlyD membrane-fusion protein of T1SS M481_2140 PF00528 Binding-protein-dependent transport system inner membrane component M481_2141 PF04041 beta-1,4-mannooligosaccharide phosphorylase M481_2145 PF00924 Mechanosensitive ion channel M481_2146 PF01867 CRISPR associated protein Cas1 M481_2148 PF09611 CRISPR-associated protein (Cas_Csy1) M481_2149 PF09614 CRISPR-associated protein (Cas_Csy2) M481_2150 PF09615 CRISPR-associated protein (Cas_Csy3) M481_2151 PF09618 CRISPR-associated protein (Cas_Csy4) M481_2152 PF00248 Aldo/keto reductase family M481_2154 PF00083 Sugar (and other) transporter M481_2156 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M481_2156 PF03466 LysR substrate binding domain M481_2157 PF00765 Autoinducer synthase M481_2158 PF00196 Bacterial regulatory proteins, luxR family M481_2158 PF03472 Autoinducer binding domain M481_216 PF00296 Luciferase-like monooxygenase M481_2162 PF01594 AI-2E family transporter M481_2163 PF00196 Bacterial regulatory proteins, luxR family M481_2164 PF01266 FAD dependent oxidoreductase M481_2165 PF13991 BssS protein family M481_2166 PF00872 Transposase, Mutator family M481_2167 PF06183 DinI-like family M481_2168 PF01979 Amidohydrolase family M481_2169 PF03992 Antibiotic biosynthesis monooxygenase M481_217 PF01381 Helix-turn-helix M481_2170 PF00575 S1 RNA binding domain M481_2170 PF10150 Ribonuclease E/G family M481_2170 PF12111 Polyribonucleotide phosphorylase C terminal M481_2171 PF01479 S4 domain M481_2171 PF00849 RNA pseudouridylate synthase M481_2172 PF02545 Maf-like protein M481_2173 PF02620 Large ribosomal RNA subunit accumulation protein YceD M481_2174 PF01783 Ribosomal L32p protein family M481_2175 PF02504 Fatty acid synthesis protein M481_2176 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal M481_2176 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III M481_2177 PF00698 Acyl transferase domain M481_2179 PF00550 Phosphopantetheine attachment site M481_2180 PF02801 Beta-ketoacyl synthase, C-terminal domain M481_2180 PF00109 Beta-ketoacyl synthase, N-terminal domain M481_2181 PF01797 Transposase IS200 like M481_2182 PF01063 Amino-transferase class IV M481_2183 PF02618 YceG-like family M481_2184 PF02223 Thymidylate kinase M481_2185 PF09115 DNA polymerase III, delta subunit, C terminal M481_2186 PF01026 TatD related DNase M481_2187 PF02378 Phosphotransferase system, EIIC M481_2187 PF00367 phosphotransferase system, EIIB M481_2189 PF08501 Shikimate dehydrogenase substrate binding domain M481_219 PF12343 Cold shock protein DEAD box A M481_219 PF03880 DbpA RNA binding domain M481_219 PF00270 DEAD/DEAH box helicase M481_219 PF00271 Helicase conserved C-terminal domain M481_2190 PF01230 HIT domain M481_2191 PF07233 Protein of unknown function (DUF1425) M481_2192 PF13036 Peptidoglycan-synthase activator LpoB M481_2192 PF08139 Prokaryotic membrane lipoprotein lipid attachment site M481_2193 PF01636 Phosphotransferase enzyme family M481_2194 PF00933 Glycosyl hydrolase family 3 N terminal domain M481_2195 PF05728 Uncharacterised protein family (UPF0227) M481_2196 PF07992 Pyridine nucleotide-disulphide oxidoreductase M481_2199 PF00872 Transposase, Mutator family M481_22 PF00501 AMP-binding enzyme M481_220 PF13181 Tetratricopeptide repeat M481_220 PF07719 Tetratricopeptide repeat M481_2200 PF05433 Glycine zipper 2TM domain M481_2201 PF17757 UvrB interaction domain M481_2201 PF03461 TRCF domain M481_2201 PF00271 Helicase conserved C-terminal domain M481_2201 PF02559 CarD-like/TRCF domain M481_2201 PF00270 DEAD/DEAH box helicase M481_2202 PF02687 FtsX-like permease family M481_2202 PF12704 MacB-like periplasmic core domain M481_2203 PF00005 ABC transporter M481_2204 PF02687 FtsX-like permease family M481_2204 PF12704 MacB-like periplasmic core domain M481_2205 PF00480 ROK family M481_2206 PF02146 Sir2 family M481_2207 PF07687 Peptidase dimerisation domain M481_2207 PF01546 Peptidase family M20/M25/M40 M481_2208 PF08007 Cupin superfamily protein M481_2209 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M481_2209 PF08918 PhoQ Sensor M481_221 PF00013 KH domain M481_221 PF01138 3' exoribonuclease family, domain 1 M481_221 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain M481_221 PF03725 3' exoribonuclease family, domain 2 M481_221 PF00575 S1 RNA binding domain M481_2210 PF00486 Transcriptional regulatory protein, C terminal M481_2210 PF00072 Response regulator receiver domain M481_2212 PF08328 Adenylosuccinate lyase C-terminal M481_2212 PF00206 Lyase M481_2213 PF04356 Protein of unknown function (DUF489) M481_2215 PF00293 NUDIX domain M481_2216 PF00849 RNA pseudouridylate synthase M481_2217 PF00180 Isocitrate/isopropylmalate dehydrogenase M481_2218 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family M481_2218 PF00356 Bacterial regulatory proteins, lacI family M481_2220 PF08447 PAS fold M481_2220 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain M481_2221 PF05368 NmrA-like family M481_2222 PF01638 HxlR-like helix-turn-helix M481_2224 PF00328 Histidine phosphatase superfamily (branch 2) M481_2225 PF14001 YdfZ protein M481_2227 PF01037 Lrp/AsnC ligand binding domain M481_2227 PF13404 AsnC-type helix-turn-helix domain M481_2228 PF10777 Inner membrane protein YlaC M481_2229 PF08240 Alcohol dehydrogenase GroES-like domain M481_2229 PF00107 Zinc-binding dehydrogenase M481_2229 PF16197 Ketoacyl-synthetase C-terminal extension M481_2229 PF00109 Beta-ketoacyl synthase, N-terminal domain M481_2229 PF02801 Beta-ketoacyl synthase, C-terminal domain M481_2229 PF14765 Polyketide synthase dehydratase M481_2229 PF08659 KR domain M481_2229 PF00698 Acyl transferase domain M481_2229 PF00550 Phosphopantetheine attachment site M481_223 PF00665 Integrase core domain M481_223 PF13276 HTH-like domain M481_223 PF13333 Integrase core domain M481_2230 PF02836 Glycosyl hydrolases family 2, TIM barrel domain M481_2230 PF00703 Glycosyl hydrolases family 2 M481_2230 PF02837 Glycosyl hydrolases family 2, sugar binding domain M481_2230 PF02929 Beta galactosidase small chain M481_2230 PF16353 Domain of unknown function(DUF4981) M481_2231 PF00313 'Cold-shock' DNA-binding domain M481_2232 PF10781 Dextransucrase DSRB M481_2233 PF00672 HAMP domain M481_2233 PF02203 Tar ligand binding domain homologue M481_2233 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain M481_2234 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain M481_2234 PF02203 Tar ligand binding domain homologue M481_2234 PF00672 HAMP domain M481_2235 PF02308 MgtC family M481_2236 PF00689 Cation transporting ATPase, C-terminus M481_2236 PF00690 Cation transporter/ATPase, N-terminus M481_2237 PF05247 Flagellar transcriptional activator (FlhD) M481_2238 PF05280 Flagellar transcriptional activator (FlhC) M481_2239 PF01618 MotA/TolQ/ExbB proton channel family M481_2240 PF00691 OmpA family M481_2240 PF13677 Membrane MotB of proton-channel complex MotA/MotB M481_2241 PF01627 Hpt domain M481_2241 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M481_2241 PF02895 Signal transducing histidine kinase, homodimeric domain M481_2241 PF01584 CheW-like domain M481_2241 PF09078 CheY binding M481_2242 PF01584 CheW-like domain M481_2243 PF07690 Major Facilitator Superfamily M481_2244 PF01042 Endoribonuclease L-PSP M481_2246 PF08348 YheO-like PAS domain M481_2246 PF13309 HTH domain M481_2247 PF12951 Passenger-associated-transport-repeat M481_2250 PF02203 Tar ligand binding domain homologue M481_2250 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain M481_2250 PF00672 HAMP domain M481_2251 PF02203 Tar ligand binding domain homologue M481_2251 PF00672 HAMP domain M481_2251 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain M481_2252 PF01739 CheR methyltransferase, SAM binding domain M481_2252 PF03705 CheR methyltransferase, all-alpha domain M481_2253 PF00072 Response regulator receiver domain M481_2253 PF01339 CheB methylesterase M481_2254 PF00072 Response regulator receiver domain M481_2255 PF04344 Chemotaxis phosphatase, CheZ M481_2256 PF01510 N-acetylmuramoyl-L-alanine amidase M481_2257 PF13018 Extended Signal Peptide of Type V secretion system M481_2257 PF03895 YadA-like membrane anchor domain M481_2257 PF05658 Head domain of trimeric autotransporter adhesin M481_2257 PF05662 Coiled stalk of trimeric autotransporter adhesin M481_2258 PF05662 Coiled stalk of trimeric autotransporter adhesin M481_2258 PF13018 Extended Signal Peptide of Type V secretion system M481_2258 PF03895 YadA-like membrane anchor domain M481_2258 PF05658 Head domain of trimeric autotransporter adhesin M481_226 PF16901 C-terminal domain of alpha-glycerophosphate oxidase M481_226 PF01266 FAD dependent oxidoreductase M481_2261 PF00842 Alanine racemase, C-terminal domain M481_2261 PF01168 Alanine racemase, N-terminal domain M481_2267 PF01695 IstB-like ATP binding protein M481_2268 PF00665 Integrase core domain M481_2268 PF02796 Helix-turn-helix domain of resolvase M481_227 PF00343 Carbohydrate phosphorylase M481_2270 PF07351 Protein of unknown function (DUF1480) M481_2273 PF02753 Pili assembly chaperone PapD, C-terminal domain M481_2273 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain M481_2277 PF02470 MlaD protein M481_2278 PF04403 Paraquat-inducible protein A M481_2279 PF13185 GAF domain M481_228 PF08323 Starch synthase catalytic domain M481_228 PF00534 Glycosyl transferases group 1 M481_2280 PF04352 ProQ/FINO family M481_2280 PF17516 ProQ C-terminal domain M481_2281 PF17804 Tail specific protease N-terminal domain M481_2281 PF11818 C-terminal domain of tail specific protease (DUF3340) M481_2281 PF03572 Peptidase family S41 M481_2281 PF00595 PDZ domain M481_2282 PF01435 Peptidase family M48 M481_2284 PF00419 Fimbrial protein M481_2285 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain M481_2285 PF02753 Pili assembly chaperone PapD, C-terminal domain M481_2286 PF00577 Outer membrane usher protein M481_2286 PF13954 PapC N-terminal domain M481_2286 PF13953 PapC C-terminal domain M481_2288 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain M481_2288 PF02753 Pili assembly chaperone PapD, C-terminal domain M481_2289 PF07690 Major Facilitator Superfamily M481_229 PF00483 Nucleotidyl transferase M481_2290 PF14583 Oligogalacturonate lyase M481_2291 PF01614 Bacterial transcriptional regulator M481_2291 PF09339 IclR helix-turn-helix domain M481_2292 PF01510 N-acetylmuramoyl-L-alanine amidase M481_2294 PF04307 LexA-binding, inner membrane-associated putative hydrolase M481_2295 PF06178 Oligogalacturonate-specific porin protein (KdgM) M481_2296 PF01547 Bacterial extracellular solute-binding protein M481_2297 PF03459 TOBE domain M481_2297 PF00005 ABC transporter M481_2297 PF17912 MalK OB fold domain M481_2298 PF00528 Binding-protein-dependent transport system inner membrane component M481_2299 PF00528 Binding-protein-dependent transport system inner membrane component M481_23 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M481_23 PF03466 LysR substrate binding domain M481_230 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) M481_230 PF18390 Glycogen debranching enzyme C-terminal domain M481_230 PF00128 Alpha amylase, catalytic domain M481_2300 PF06917 Periplasmic pectate lyase M481_2302 PF04962 KduI/IolB family M481_2303 PF07883 Cupin domain M481_2304 PF00872 Transposase, Mutator family M481_2305 PF13419 Haloacid dehalogenase-like hydrolase M481_2306 PF14002 YniB-like protein M481_2308 PF00950 ABC 3 transport family M481_2309 PF00950 ABC 3 transport family M481_231 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) M481_231 PF02806 Alpha amylase, C-terminal all-beta domain M481_231 PF00128 Alpha amylase, catalytic domain M481_2310 PF00005 ABC transporter M481_2311 PF01297 Zinc-uptake complex component A periplasmic M481_2312 PF01464 Transglycosylase SLT domain M481_2313 PF01914 MarC family integral membrane protein M481_2315 PF13619 KTSC domain M481_2316 PF03129 Anticodon binding domain M481_2316 PF02824 TGS domain M481_2316 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain M481_2316 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) M481_2317 PF05198 Translation initiation factor IF-3, N-terminal domain M481_2317 PF00707 Translation initiation factor IF-3, C-terminal domain M481_2318 PF01632 Ribosomal protein L35 M481_2319 PF00453 Ribosomal protein L20 M481_232 PF06580 Histidine kinase M481_232 PF07694 5TMR of 5TMR-LYT M481_2320 PF01409 tRNA synthetases class II core domain (F) M481_2320 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain M481_2321 PF03484 tRNA synthetase B5 domain M481_2321 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain M481_2321 PF03483 B3/4 domain M481_2321 PF01588 Putative tRNA binding domain M481_2321 PF03147 Ferredoxin-fold anticodon binding domain M481_2322 PF00216 Bacterial DNA-binding protein M481_2324 PF01032 FecCD transport family M481_2325 PF00255 Glutathione peroxidase M481_2326 PF00005 ABC transporter M481_2327 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family M481_2328 PF00535 Glycosyl transferase family 2 M481_2329 PF01370 NAD dependent epimerase/dehydratase family M481_2329 PF02911 Formyl transferase, C-terminal domain M481_2329 PF00551 Formyl transferase M481_233 PF07979 Intimin C-type lectin domain M481_233 PF09134 Invasin, domain 3 M481_233 PF02369 Bacterial Ig-like domain (group 1) M481_233 PF11924 Inverse autotransporter, beta-domain M481_2330 PF01522 Polysaccharide deacetylase M481_2331 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase M481_2332 PF00892 EamA-like transporter family M481_2334 PF00877 NlpC/P60 family M481_2335 PF03099 Biotin/lipoate A/B protein ligase family M481_2335 PF10437 Bacterial lipoate protein ligase C-terminus M481_2336 PF02696 Uncharacterized ACR, YdiU/UPF0061 family M481_2337 PF00793 DAHP synthetase I family M481_2338 PF03618 Kinase/pyrophosphorylase M481_2339 PF02896 PEP-utilising enzyme, TIM barrel domain M481_2339 PF00391 PEP-utilising enzyme, mobile domain M481_2339 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain M481_2340 PF01594 AI-2E family transporter M481_2341 PF13183 4Fe-4S dicluster domain M481_2341 PF01565 FAD binding domain M481_2341 PF02913 FAD linked oxidases, C-terminal domain M481_2342 PF03061 Thioesterase superfamily M481_2343 PF01521 Iron-sulphur cluster biosynthesis M481_2344 PF01458 Uncharacterized protein family (UPF0051) M481_2345 PF00005 ABC transporter M481_2346 PF01458 Uncharacterized protein family (UPF0051) M481_2347 PF00266 Aminotransferase class-V M481_2348 PF02657 Fe-S metabolism associated domain M481_2349 PF17969 L,D-transpeptidase C-terminal domain M481_2349 PF03734 L,D-transpeptidase catalytic domain M481_2349 PF01476 LysM domain M481_2350 PF01695 IstB-like ATP binding protein M481_2351 PF02796 Helix-turn-helix domain of resolvase M481_2351 PF00665 Integrase core domain M481_2353 PF04728 Lipoprotein leucine-zipper M481_2354 PF02887 Pyruvate kinase, alpha/beta domain M481_2354 PF00224 Pyruvate kinase, barrel domain M481_2357 PF01554 MatE M481_2358 PF00677 Lumazine binding domain M481_2360 PF07690 Major Facilitator Superfamily M481_2361 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M481_2361 PF03466 LysR substrate binding domain M481_2362 PF00356 Bacterial regulatory proteins, lacI family M481_2364 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain M481_2364 PF02777 Iron/manganese superoxide dismutases, C-terminal domain M481_2365 PF00877 NlpC/P60 family M481_2367 PF00462 Glutaredoxin M481_2368 PF00929 Exonuclease M481_2369 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily M481_2370 PF14431 YwqJ-like deaminase M481_2370 PF18807 Tripartite Tc toxins repeat M481_2371 PF00724 NADH:flavin oxidoreductase / NADH oxidase family M481_2372 PF16925 Tetracyclin repressor-like, C-terminal domain M481_2372 PF00440 Bacterial regulatory proteins, tetR family M481_2373 PF00884 Sulfatase M481_2373 PF08019 Phosphoethanolamine transferase EptA/EptB M481_2374 PF06945 Protein of unknown function (DUF1289) M481_2375 PF00248 Aldo/keto reductase family M481_2376 PF01047 MarR family M481_2377 PF05433 Glycine zipper 2TM domain M481_2378 PF03702 Anhydro-N-acetylmuramic acid kinase M481_2379 PF09864 Membrane-bound lysozyme-inhibitor of c-type lysozyme M481_238 PF02774 Semialdehyde dehydrogenase, dimerisation domain M481_238 PF01118 Semialdehyde dehydrogenase, NAD binding domain M481_2380 PF01243 Pyridoxamine 5'-phosphate oxidase M481_2380 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region M481_2381 PF01479 S4 domain M481_2381 PF00579 tRNA synthetases class I (W and Y) M481_2382 PF08543 Phosphomethylpyrimidine kinase M481_2383 PF00043 Glutathione S-transferase, C-terminal domain M481_2383 PF02798 Glutathione S-transferase, N-terminal domain M481_2384 PF11656 YjbD family (DUF3811) M481_2385 PF04893 Yip1 domain M481_2386 PF00854 POT family M481_2389 PF00005 ABC transporter M481_239 PF01914 MarC family integral membrane protein M481_2390 PF00005 ABC transporter M481_2390 PF08352 Oligopeptide/dipeptide transporter, C-terminal region M481_2391 PF00528 Binding-protein-dependent transport system inner membrane component M481_2391 PF12911 N-terminal TM domain of oligopeptide transport permease C M481_2392 PF00528 Binding-protein-dependent transport system inner membrane component M481_2393 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle M481_2395 PF00158 Sigma-54 interaction domain M481_2395 PF02954 Bacterial regulatory protein, Fis family M481_2396 PF04012 PspA/IM30 family M481_2397 PF06667 Phage shock protein B M481_2398 PF04024 PspC domain M481_2400 PF04317 YcjX-like family, DUF463 M481_2401 PF05128 Domain of unknown function (DUF697) M481_2404 PF18024 Helix-turn-helix domain M481_2404 PF00158 Sigma-54 interaction domain M481_2406 PF01695 IstB-like ATP binding protein M481_2407 PF02796 Helix-turn-helix domain of resolvase M481_2407 PF00665 Integrase core domain M481_2408 PF08534 Redoxin M481_2409 PF13378 Enolase C-terminal domain-like M481_2409 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain M481_2410 PF00246 Zinc carboxypeptidase M481_2411 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle M481_2412 PF01544 CorA-like Mg2+ transporter protein M481_2414 PF07859 alpha/beta hydrolase fold M481_2414 PF13472 GDSL-like Lipase/Acylhydrolase family M481_2416 PF01171 PP-loop family M481_2417 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain M481_2417 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg M481_2417 PF10371 Domain of unknown function M481_2417 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II M481_2417 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase M481_2418 PF00893 Small Multidrug Resistance protein M481_2419 PF02308 MgtC family M481_2420 PF03891 Domain of unknown function (DUF333) M481_2421 PF03724 META domain M481_2422 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain M481_2422 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain M481_2423 PF11739 Dicarboxylate transport M481_2424 PF13617 YnbE-like lipoprotein M481_2425 PF07027 Protein of unknown function (DUF1318) M481_2426 PF01232 Mannitol dehydrogenase Rossmann domain M481_2426 PF08125 Mannitol dehydrogenase C-terminal domain M481_2427 PF00325 Bacterial regulatory proteins, crp family M481_2427 PF04198 Putative sugar-binding domain M481_2428 PF02525 Flavodoxin-like fold M481_2429 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold M481_2429 PF00271 Helicase conserved C-terminal domain M481_2429 PF00270 DEAD/DEAH box helicase M481_2429 PF04408 Helicase associated domain (HA2) M481_2429 PF11898 Domain of unknown function (DUF3418) M481_243 PF01202 Shikimate kinase M481_2432 PF00089 Trypsin M481_2434 PF01292 Prokaryotic cytochrome b561 M481_2435 PF04264 YceI-like domain M481_2437 PF14431 YwqJ-like deaminase M481_2437 PF18807 Tripartite Tc toxins repeat M481_2439 PF02074 Carboxypeptidase Taq (M32) metallopeptidase M481_244 PF02447 GntP family permease M481_2440 PF00512 His Kinase A (phospho-acceptor) domain M481_2440 PF00672 HAMP domain M481_2440 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M481_2441 PF00486 Transcriptional regulatory protein, C terminal M481_2441 PF00072 Response regulator receiver domain M481_2443 PF13520 Amino acid permease M481_2444 PF07338 Protein of unknown function (DUF1471) M481_2445 PF05222 Alanine dehydrogenase/PNT, N-terminal domain M481_2445 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch M481_2445 PF01262 Alanine dehydrogenase/PNT, C-terminal domain M481_2446 PF02233 NAD(P) transhydrogenase beta subunit M481_2447 PF00582 Universal stress protein family M481_2448 PF00027 Cyclic nucleotide-binding domain M481_2448 PF13545 Crp-like helix-turn-helix domain M481_2449 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain M481_2449 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain M481_245 PF00356 Bacterial regulatory proteins, lacI family M481_245 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family M481_2450 PF00245 Alkaline phosphatase M481_2452 PF13419 Haloacid dehalogenase-like hydrolase M481_2453 PF01842 ACT domain M481_2454 PF00205 Thiamine pyrophosphate enzyme, central domain M481_2454 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain M481_2454 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain M481_246 PF17954 Quercetinase C-terminal cupin domain M481_246 PF02678 Pirin M481_2460 PF10423 Bacterial AMP nucleoside phosphorylase N-terminus M481_2460 PF01048 Phosphorylase superfamily M481_2461 PF00005 ABC transporter M481_2462 PF00528 Binding-protein-dependent transport system inner membrane component M481_2463 PF09084 NMT1/THI5 like M481_2464 PF13407 Periplasmic binding protein domain M481_2466 PF00356 Bacterial regulatory proteins, lacI family M481_2467 PF06649 Protein of unknown function (DUF1161) M481_2468 PF00654 Voltage gated chloride channel M481_2471 PF00480 ROK family M481_2472 PF03466 LysR substrate binding domain M481_2472 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M481_2473 PF07690 Major Facilitator Superfamily M481_2474 PF05472 DNA replication terminus site-binding protein (Ter protein) M481_2475 PF00206 Lyase M481_2475 PF10415 Fumarase C C-terminus M481_2476 PF01238 Phosphomannose isomerase type I M481_2477 PF06097 Bacterial protein of unknown function (DUF945) M481_2479 PF13593 SBF-like CPA transporter family (DUF4137) M481_248 PF00072 Response regulator receiver domain M481_248 PF00486 Transcriptional regulatory protein, C terminal M481_2480 PF02894 Oxidoreductase family, C-terminal alpha/beta domain M481_2480 PF01408 Oxidoreductase family, NAD-binding Rossmann fold M481_2481 PF12833 Helix-turn-helix domain M481_2481 PF02311 AraC-like ligand binding domain M481_2482 PF02653 Branched-chain amino acid transport system / permease component M481_2483 PF02653 Branched-chain amino acid transport system / permease component M481_2484 PF00005 ABC transporter M481_2485 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family M481_2486 PF02782 FGGY family of carbohydrate kinases, C-terminal domain M481_2487 PF11762 L-arabinose isomerase C-terminal domain M481_2487 PF02610 L-arabinose isomerase M481_2489 PF00664 ABC transporter transmembrane region M481_2489 PF00005 ABC transporter M481_2489 PF03412 Peptidase C39 family M481_2491 PF13533 Biotin-lipoyl like M481_2492 PF00005 ABC transporter M481_2492 PF00664 ABC transporter transmembrane region M481_2493 PF03412 Peptidase C39 family M481_2493 PF00664 ABC transporter transmembrane region M481_2493 PF00005 ABC transporter M481_2494 PF10754 Protein of unknown function (DUF2569) M481_2495 PF02508 Rnf-Nqr subunit, membrane protein M481_2496 PF04060 Putative Fe-S cluster M481_2497 PF13375 RnfC Barrel sandwich hybrid domain M481_2497 PF13237 4Fe-4S dicluster domain M481_2497 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit M481_2497 PF10531 SLBB domain M481_2498 PF06445 GyrI-like small molecule binding domain M481_2498 PF12833 Helix-turn-helix domain M481_2499 PF03116 NQR2, RnfD, RnfE family M481_25 PF08502 LeuA allosteric (dimerisation) domain M481_25 PF00682 HMGL-like M481_250 PF01116 Fructose-bisphosphate aldolase class-II M481_2500 PF04205 FMN-binding domain M481_2501 PF02508 Rnf-Nqr subunit, membrane protein M481_2502 PF00633 Helix-hairpin-helix motif M481_2502 PF00730 HhH-GPD superfamily base excision DNA repair protein M481_2502 PF10576 Iron-sulfur binding domain of endonuclease III M481_2503 PF01370 NAD dependent epimerase/dehydratase family M481_2504 PF07690 Major Facilitator Superfamily M481_2505 PF17876 Cold shock domain M481_2505 PF00773 RNB domain M481_2505 PF00575 S1 RNA binding domain M481_2505 PF08206 Ribonuclease B OB domain M481_2506 PF02554 Carbon starvation protein CstA M481_2506 PF13722 5TM C-terminal transporter carbon starvation CstA M481_2507 PF04328 Selenoprotein, putative M481_2508 PF00923 Transaldolase/Fructose-6-phosphate aldolase M481_2510 PF00596 Class II Aldolase and Adducin N-terminal domain M481_2512 PF01253 Translation initiation factor SUI1 M481_2513 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family M481_2515 PF18073 Rubredoxin metal binding domain M481_2516 PF06305 Lipopolysaccharide assembly protein A domain M481_2517 PF01569 PAP2 superfamily M481_2518 PF00925 GTP cyclohydrolase II M481_2519 PF00694 Aconitase C-terminal domain M481_2519 PF00330 Aconitase family (aconitate hydratase) M481_252 PF13407 Periplasmic binding protein domain M481_2521 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M481_2521 PF03466 LysR substrate binding domain M481_2522 PF01797 Transposase IS200 like M481_2523 PF01396 Topoisomerase DNA binding C4 zinc finger M481_2523 PF08272 Topoisomerase I zinc-ribbon-like M481_2523 PF01131 DNA topoisomerase M481_2523 PF01751 Toprim domain M481_2525 PF10692 Protein of unknown function (DUF2498) M481_2526 PF08496 Peptidase family S49 N-terminal M481_2526 PF01343 Peptidase family S49 M481_2527 PF00106 short chain dehydrogenase M481_2528 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP M481_2529 PF00849 RNA pseudouridylate synthase M481_2529 PF01479 S4 domain M481_253 PF02653 Branched-chain amino acid transport system / permease component M481_2530 PF01300 Telomere recombination M481_2531 PF02811 PHP domain M481_2532 PF00425 chorismate binding enzyme M481_2532 PF04715 Anthranilate synthase component I, N terminal region M481_2533 PF00117 Glutamine amidotransferase class-I M481_2534 PF00591 Glycosyl transferase family, a/b domain M481_2534 PF02885 Glycosyl transferase family, helical bundle domain M481_2535 PF00218 Indole-3-glycerol phosphate synthase M481_2535 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase M481_2536 PF00291 Pyridoxal-phosphate dependent enzyme M481_2537 PF00290 Tryptophan synthase alpha chain M481_2539 PF03922 OmpW family M481_254 PF00005 ABC transporter M481_2543 PF04279 Intracellular septation protein A M481_2544 PF03061 Thioesterase superfamily M481_2545 PF00872 Transposase, Mutator family M481_2546 PF03544 Gram-negative bacterial TonB protein C-terminal M481_2547 PF03795 YCII-related domain M481_255 PF08448 PAS fold M481_255 PF00512 His Kinase A (phospho-acceptor) domain M481_255 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M481_255 PF00072 Response regulator receiver domain M481_255 PF13188 PAS domain M481_2550 PF13505 Outer membrane protein beta-barrel domain M481_2551 PF13396 Phospholipase_D-nuclease N-terminal M481_2551 PF13091 PLD-like domain M481_2552 PF04269 Protein of unknown function, DUF440 M481_2554 PF08352 Oligopeptide/dipeptide transporter, C-terminal region M481_2554 PF00005 ABC transporter M481_2555 PF00005 ABC transporter M481_2555 PF08352 Oligopeptide/dipeptide transporter, C-terminal region M481_2556 PF12911 N-terminal TM domain of oligopeptide transport permease C M481_2556 PF00528 Binding-protein-dependent transport system inner membrane component M481_2557 PF00528 Binding-protein-dependent transport system inner membrane component M481_2558 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle M481_2559 PF01914 MarC family integral membrane protein M481_2560 PF00171 Aldehyde dehydrogenase family M481_2560 PF00465 Iron-containing alcohol dehydrogenase M481_2561 PF00265 Thymidine kinase M481_2562 PF00816 H-NS histone family M481_2563 PF00872 Transposase, Mutator family M481_2564 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain M481_2564 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain M481_2564 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain M481_2565 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain M481_2565 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain M481_2565 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain M481_2566 PF00072 Response regulator receiver domain M481_2567 PF02810 SEC-C motif M481_2568 PF00551 Formyl transferase M481_2568 PF01842 ACT domain M481_257 PF01384 Phosphate transporter family M481_2571 PF00872 Transposase, Mutator family M481_2572 PF03466 LysR substrate binding domain M481_2572 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M481_2573 PF03372 Endonuclease/Exonuclease/phosphatase family M481_2574 PF00293 NUDIX domain M481_2575 PF07383 Protein of unknown function (DUF1496) M481_2576 PF01751 Toprim domain M481_2576 PF01131 DNA topoisomerase M481_2577 PF02769 AIR synthase related protein, C-terminal domain M481_2577 PF00586 AIR synthase related protein, N-terminal domain M481_2578 PF00881 Nitroreductase family M481_2579 PF01343 Peptidase family S49 M481_2580 PF17763 Glutaminase/Asparaginase C-terminal domain M481_2580 PF00710 Asparaginase, N-terminal M481_2581 PF00857 Isochorismatase family M481_2582 PF07023 Protein of unknown function (DUF1315) M481_2583 PF01641 SelR domain M481_2584 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain M481_2584 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain M481_2585 PF01263 Aldose 1-epimerase M481_2586 PF06629 MltA-interacting protein MipA M481_2587 PF06798 PrkA serine protein kinase C-terminal domain M481_2587 PF08298 PrkA AAA domain M481_2588 PF04285 Protein of unknown function (DUF444) M481_259 PF10625 Universal stress protein B (UspB) M481_2590 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M481_2590 PF03466 LysR substrate binding domain M481_2591 PF02678 Pirin M481_2591 PF05726 Pirin C-terminal cupin domain M481_2592 PF07690 Major Facilitator Superfamily M481_2593 PF01266 FAD dependent oxidoreductase M481_2594 PF04293 SpoVR like protein M481_2595 PF07840 FadR C-terminal domain M481_2595 PF00392 Bacterial regulatory proteins, gntR family M481_2596 PF06450 Bacterial Na+/H+ antiporter B (NhaB) M481_2597 PF02600 Disulfide bond formation protein DsbB M481_26 PF00180 Isocitrate/isopropylmalate dehydrogenase M481_260 PF00582 Universal stress protein family M481_2600 PF00266 Aminotransferase class-V M481_2602 PF02413 Caudovirales tail fibre assembly protein, lambda gpK M481_261 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain M481_261 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase M481_262 PF08548 Peptidase M10 serralysin C terminal M481_262 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) M481_262 PF00413 Matrixin M481_263 PF04445 Putative SAM-dependent methyltransferase M481_264 PF01432 Peptidase family M3 M481_2645 PF06530 Phage antitermination protein Q M481_2647 PF05772 NinB protein M481_265 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ M481_2650 PF01695 IstB-like ATP binding protein M481_2651 PF02796 Helix-turn-helix domain of resolvase M481_2651 PF00665 Integrase core domain M481_2652 PF00589 Phage integrase family M481_2652 PF12167 Arm DNA-binding domain M481_2653 PF03692 Putative zinc- or iron-chelating domain M481_2654 PF01557 Fumarylacetoacetate (FAA) hydrolase family M481_2655 PF13406 Transglycosylase SLT domain M481_2656 PF05166 YcgL domain M481_2657 PF05209 Septum formation inhibitor MinC, N-terminal domain M481_2657 PF03775 Septum formation inhibitor MinC, C-terminal domain M481_2658 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain M481_2659 PF03776 Septum formation topological specificity factor MinE M481_266 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain M481_266 PF07992 Pyridine nucleotide-disulphide oxidoreductase M481_2660 PF01612 3'-5' exonuclease M481_2660 PF00570 HRDC domain M481_2661 PF13193 AMP-binding enzyme C-terminal domain M481_2661 PF00501 AMP-binding enzyme M481_2662 PF03843 Outer membrane lipoprotein Slp family M481_2663 PF00814 Glycoprotease family M481_2664 PF13307 Helicase C-terminal domain M481_2664 PF04851 Type III restriction enzyme, res subunit M481_2665 PF01042 Endoribonuclease L-PSP M481_2666 PF00893 Small Multidrug Resistance protein M481_2667 PF00893 Small Multidrug Resistance protein M481_2668 PF01081 KDPG and KHG aldolase M481_267 PF13556 PucR C-terminal helix-turn-helix domain M481_267 PF17853 GGDEF-like domain M481_267 PF05651 Putative sugar diacid recognition M481_2670 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain M481_2670 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain M481_2671 PF01380 SIS domain M481_2671 PF01418 Helix-turn-helix domain, rpiR family M481_2672 PF00224 Pyruvate kinase, barrel domain M481_2672 PF02887 Pyruvate kinase, alpha/beta domain M481_2673 PF03279 Bacterial lipid A biosynthesis acyltransferase M481_2674 PF08525 Opacity-associated protein A N-terminal motif M481_2674 PF01476 LysM domain M481_2674 PF01551 Peptidase family M23 M481_2675 PF01297 Zinc-uptake complex component A periplasmic M481_2676 PF00005 ABC transporter M481_2677 PF00950 ABC 3 transport family M481_2678 PF05491 RuvB C-terminal winged helix domain M481_2678 PF17864 RuvB AAA lid domain M481_2678 PF05496 Holliday junction DNA helicase RuvB P-loop domain M481_2679 PF07499 RuvA, C-terminal domain M481_2679 PF01330 RuvA N terminal domain M481_268 PF02447 GntP family permease M481_2680 PF02075 Crossover junction endodeoxyribonuclease RuvC M481_2681 PF01709 Transcriptional regulator M481_2682 PF00293 NUDIX domain M481_2683 PF02938 GAD domain M481_2683 PF00152 tRNA synthetases class II (D, K and N) M481_2683 PF01336 OB-fold nucleic acid binding domain M481_2684 PF01904 Protein of unknown function DUF72 M481_2685 PF01124 MAPEG family M481_2686 PF13649 Methyltransferase domain M481_2687 PF08003 Protein of unknown function (DUF1698) M481_2688 PF03932 CutC family M481_2689 PF06185 YecM protein M481_269 PF02595 Glycerate kinase family M481_2690 PF03485 Arginyl tRNA synthetase N terminal domain M481_2690 PF00750 tRNA synthetases class I (R) M481_2690 PF05746 DALR anticodon binding domain M481_2691 PF13332 Hemagglutinin repeat M481_2691 PF05860 haemagglutination activity domain M481_2692 PF13332 Hemagglutinin repeat M481_2692 PF05860 haemagglutination activity domain M481_2693 PF17287 POTRA domain M481_2693 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB M481_2693 PF08479 POTRA domain, ShlB-type M481_2694 PF03023 Lipid II flippase MurJ M481_2695 PF01408 Oxidoreductase family, NAD-binding Rossmann fold M481_2696 PF13302 Acetyltransferase (GNAT) domain M481_2697 PF07690 Major Facilitator Superfamily M481_2698 PF07273 Protein of unknown function (DUF1439) M481_2699 PF02613 Nitrate reductase delta subunit M481_27 PF00330 Aconitase family (aconitate hydratase) M481_2700 PF02811 PHP domain M481_2702 PF01325 Iron dependent repressor, N-terminal DNA binding domain M481_2702 PF00480 ROK family M481_2703 PF03009 Glycerophosphoryl diester phosphodiesterase family M481_2704 PF00005 ABC transporter M481_2704 PF08402 TOBE domain M481_2706 PF08402 TOBE domain M481_2706 PF00005 ABC transporter M481_2707 PF00528 Binding-protein-dependent transport system inner membrane component M481_2708 PF00528 Binding-protein-dependent transport system inner membrane component M481_2710 PF03009 Glycerophosphoryl diester phosphodiesterase family M481_2712 PF01740 STAS domain M481_2712 PF00916 Sulfate permease family M481_2713 PF00793 DAHP synthetase I family M481_2714 PF13369 Transglutaminase-like superfamily M481_2715 PF04247 Invasion gene expression up-regulator, SirB M481_2716 PF17827 PrmC N-terminal domain M481_2716 PF13847 Methyltransferase domain M481_2717 PF00472 RF-1 domain M481_2717 PF03462 PCRF domain M481_2718 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain M481_2718 PF01488 Shikimate / quinate 5-dehydrogenase M481_2718 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain M481_2719 PF03550 Outer membrane lipoprotein LolB M481_2720 PF08544 GHMP kinases C terminal M481_2720 PF00288 GHMP kinases N terminal domain M481_2721 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase M481_2721 PF14572 Phosphoribosyl synthetase-associated domain M481_2722 PF10762 Protein of unknown function (DUF2583) M481_2723 PF01195 Peptidyl-tRNA hydrolase M481_2724 PF01926 50S ribosome-binding GTPase M481_2724 PF06071 Protein of unknown function (DUF933) M481_2733 PF02129 X-Pro dipeptidyl-peptidase (S15 family) M481_2734 PF00072 Response regulator receiver domain M481_2734 PF00486 Transcriptional regulatory protein, C terminal M481_2735 PF00665 Integrase core domain M481_2735 PF02796 Helix-turn-helix domain of resolvase M481_2737 PF01695 IstB-like ATP binding protein M481_2738 PF01695 IstB-like ATP binding protein M481_2739 PF00072 Response regulator receiver domain M481_2739 PF00486 Transcriptional regulatory protein, C terminal M481_274 PF03631 Virulence factor BrkB M481_2740 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M481_2740 PF00512 His Kinase A (phospho-acceptor) domain M481_2740 PF00672 HAMP domain M481_2749 PF08242 Methyltransferase domain M481_275 PF02611 CDP-diacylglycerol pyrophosphatase M481_2754 PF00872 Transposase, Mutator family M481_276 PF05170 AsmA family M481_2763 PF01370 NAD dependent epimerase/dehydratase family M481_2764 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal M481_2764 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III M481_2765 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal M481_2765 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III M481_2767 PF05962 HutD M481_2768 PF01979 Amidohydrolase family M481_2769 PF07702 UTRA domain M481_2769 PF00392 Bacterial regulatory proteins, gntR family M481_277 PF00563 EAL domain M481_2770 PF01979 Amidohydrolase family M481_2771 PF00665 Integrase core domain M481_2771 PF02796 Helix-turn-helix domain of resolvase M481_2773 PF01695 IstB-like ATP binding protein M481_2775 PF00872 Transposase, Mutator family M481_2776 PF00267 Gram-negative porin M481_2777 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family M481_2778 PF04996 Succinylarginine dihydrolase M481_2779 PF00171 Aldehyde dehydrogenase family M481_278 PF01361 Tautomerase enzyme M481_2780 PF04958 Arginine N-succinyltransferase beta subunit M481_2781 PF00202 Aminotransferase class-III M481_2784 PF00392 Bacterial regulatory proteins, gntR family M481_2784 PF00155 Aminotransferase class I and II M481_2785 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term M481_2785 PF00672 HAMP domain M481_2785 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M481_2785 PF07730 Histidine kinase M481_2787 PF01699 Sodium/calcium exchanger protein M481_2788 PF02562 PhoH-like protein M481_279 PF00294 pfkB family carbohydrate kinase M481_2791 PF13994 PgaD-like protein M481_2792 PF00535 Glycosyl transferase family 2 M481_2793 PF14883 Hypothetical glycosyl hydrolase family 13 M481_2793 PF01522 Polysaccharide deacetylase M481_2795 PF00557 Metallopeptidase family M24 M481_2796 PF09313 Domain of unknown function (DUF1971) M481_2796 PF03848 Tellurite resistance protein TehB M481_2798 PF00578 AhpC/TSA family M481_2799 PF00005 ABC transporter M481_2799 PF02687 FtsX-like permease family M481_2799 PF12704 MacB-like periplasmic core domain M481_28 PF00694 Aconitase C-terminal domain M481_280 PF00675 Insulinase (Peptidase family M16) M481_280 PF05193 Peptidase M16 inactive domain M481_2801 PF12704 MacB-like periplasmic core domain M481_2801 PF00005 ABC transporter M481_2801 PF02687 FtsX-like permease family M481_2803 PF10634 Fe2+ transport protein M481_2804 PF03239 Iron permease FTR1 family M481_2807 PF04960 Glutaminase M481_2808 PF00455 DeoR C terminal sensor domain M481_2808 PF08220 DeoR-like helix-turn-helix domain M481_2809 PF00324 Amino acid permease M481_2810 PF00155 Aminotransferase class I and II M481_2811 PF02508 Rnf-Nqr subunit, membrane protein M481_2813 PF04909 Amidohydrolase M481_2817 PF03466 LysR substrate binding domain M481_2817 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M481_2818 PF03328 HpcH/HpaI aldolase/citrate lyase family M481_2819 PF01575 MaoC like domain M481_282 PF00375 Sodium:dicarboxylate symporter family M481_2820 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain M481_2820 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain M481_2822 PF00072 Response regulator receiver domain M481_2822 PF00196 Bacterial regulatory proteins, luxR family M481_2823 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M481_2823 PF00512 His Kinase A (phospho-acceptor) domain M481_2823 PF01627 Hpt domain M481_2823 PF00072 Response regulator receiver domain M481_2823 PF00497 Bacterial extracellular solute-binding proteins, family 3 M481_2823 PF00989 PAS fold M481_2825 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain M481_2825 PF02753 Pili assembly chaperone PapD, C-terminal domain M481_2826 PF00577 Outer membrane usher protein M481_2826 PF13954 PapC N-terminal domain M481_2826 PF13953 PapC C-terminal domain M481_2828 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain M481_2828 PF02753 Pili assembly chaperone PapD, C-terminal domain M481_2829 PF00872 Transposase, Mutator family M481_2832 PF00589 Phage integrase family M481_2832 PF13356 Arm DNA-binding domain M481_2833 PF00425 chorismate binding enzyme M481_2834 PF07690 Major Facilitator Superfamily M481_2835 PF00664 ABC transporter transmembrane region M481_2835 PF00005 ABC transporter M481_2836 PF04954 Siderophore-interacting protein M481_2836 PF08021 Siderophore-interacting FAD-binding domain M481_2836 PF00005 ABC transporter M481_2836 PF00664 ABC transporter transmembrane region M481_2838 PF08242 Methyltransferase domain M481_2838 PF00550 Phosphopantetheine attachment site M481_2838 PF00501 AMP-binding enzyme M481_2838 PF00668 Condensation domain M481_2839 PF16197 Ketoacyl-synthetase C-terminal extension M481_2839 PF00109 Beta-ketoacyl synthase, N-terminal domain M481_2839 PF00698 Acyl transferase domain M481_2839 PF00668 Condensation domain M481_2839 PF00550 Phosphopantetheine attachment site M481_2839 PF02801 Beta-ketoacyl synthase, C-terminal domain M481_284 PF06917 Periplasmic pectate lyase M481_2841 PF00975 Thioesterase domain M481_2842 PF00501 AMP-binding enzyme M481_2842 PF13193 AMP-binding enzyme C-terminal domain M481_2843 PF00593 TonB dependent receptor M481_2843 PF07715 TonB-dependent Receptor Plug Domain M481_285 PF06917 Periplasmic pectate lyase M481_2851 PF01695 IstB-like ATP binding protein M481_2852 PF00665 Integrase core domain M481_2852 PF02796 Helix-turn-helix domain of resolvase M481_2855 PF08402 TOBE domain M481_2855 PF00005 ABC transporter M481_2856 PF00528 Binding-protein-dependent transport system inner membrane component M481_2857 PF00528 Binding-protein-dependent transport system inner membrane component M481_2858 PF01547 Bacterial extracellular solute-binding protein M481_2859 PF02894 Oxidoreductase family, C-terminal alpha/beta domain M481_2859 PF01408 Oxidoreductase family, NAD-binding Rossmann fold M481_286 PF06178 Oligogalacturonate-specific porin protein (KdgM) M481_2866 PF00872 Transposase, Mutator family M481_2867 PF00872 Transposase, Mutator family M481_287 PF00563 EAL domain M481_287 PF00672 HAMP domain M481_287 PF17154 Gammaproteobacterial periplasmic sensor domain M481_287 PF00990 Diguanylate cyclase, GGDEF domain M481_2879 PF05638 Type VI secretion system effector, Hcp M481_288 PF01270 Glycosyl hydrolases family 8 M481_2888 PF01066 CDP-alcohol phosphatidyltransferase M481_2889 PF01541 GIY-YIG catalytic domain M481_2889 PF02151 UvrB/uvrC motif M481_2889 PF08459 UvrC Helix-hairpin-helix N-terminal M481_289 PF08352 Oligopeptide/dipeptide transporter, C-terminal region M481_289 PF00005 ABC transporter M481_2890 PF00072 Response regulator receiver domain M481_2890 PF00196 Bacterial regulatory proteins, luxR family M481_2891 PF10769 Protein of unknown function (DUF2594) M481_2892 PF06942 GlpM protein M481_2894 PF13505 Outer membrane protein beta-barrel domain M481_2896 PF00324 Amino acid permease M481_2897 PF01344 Kelch motif M481_2898 PF03358 NADPH-dependent FMN reductase M481_2899 PF04261 Dyp-type peroxidase family M481_29 PF07690 Major Facilitator Superfamily M481_290 PF08352 Oligopeptide/dipeptide transporter, C-terminal region M481_290 PF00005 ABC transporter M481_2900 PF13473 Cupredoxin-like domain M481_2900 PF09375 Imelysin M481_2901 PF03239 Iron permease FTR1 family M481_2902 PF00474 Sodium:solute symporter family M481_2904 PF18327 Proline utilization A proline dehydrogenase N-terminal domain M481_2904 PF14850 DNA-binding domain of Proline dehydrogenase M481_2904 PF01619 Proline dehydrogenase M481_2904 PF00171 Aldehyde dehydrogenase family M481_291 PF12911 N-terminal TM domain of oligopeptide transport permease C M481_291 PF00528 Binding-protein-dependent transport system inner membrane component M481_2911 PF00291 Pyridoxal-phosphate dependent enzyme M481_2912 PF02899 Phage integrase, N-terminal SAM-like domain M481_2913 PF04542 Sigma-70 region 2 M481_2913 PF04545 Sigma-70, region 4 M481_2913 PF04539 Sigma-70 region 3 M481_2914 PF00669 Bacterial flagellin N-terminal helical region M481_2914 PF00700 Bacterial flagellin C-terminal helical region M481_2914 PF08884 Flagellin D3 domain M481_2915 PF02465 Flagellar hook-associated protein 2 N-terminus M481_2915 PF07195 Flagellar hook-associated protein 2 C-terminus M481_2915 PF07196 Flagellin hook IN motif M481_2916 PF02561 Flagellar protein FliS M481_2917 PF05400 Flagellar protein FliT M481_2918 PF12833 Helix-turn-helix domain M481_2919 PF01966 HD domain M481_292 PF00528 Binding-protein-dependent transport system inner membrane component M481_2920 PF00730 HhH-GPD superfamily base excision DNA repair protein M481_2923 PF02049 Flagellar hook-basal body complex protein FliE M481_2924 PF01514 Secretory protein of YscJ/FliF family M481_2924 PF08345 Flagellar M-ring protein C-terminal M481_2925 PF14841 FliG middle domain M481_2925 PF01706 FliG C-terminal domain M481_2925 PF14842 FliG N-terminal domain M481_2926 PF02108 Flagellar assembly protein FliH M481_2927 PF18269 T3SS EscN ATPase C-terminal domain M481_2927 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain M481_2928 PF02050 Flagellar FliJ protein M481_2929 PF02120 Flagellar hook-length control protein FliK M481_293 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle M481_2930 PF03748 Flagellar basal body-associated protein FliL M481_2931 PF02154 Flagellar motor switch protein FliM M481_2931 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term M481_2932 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term M481_2932 PF16973 Flagellar motor switch protein FliN N-terminal M481_2933 PF04347 Flagellar biosynthesis protein, FliO M481_2934 PF00813 FliP family M481_2935 PF01313 Bacterial export proteins, family 3 M481_2936 PF01311 Bacterial export proteins, family 1 M481_2939 PF00294 pfkB family carbohydrate kinase M481_2940 PF02653 Branched-chain amino acid transport system / permease component M481_2941 PF00005 ABC transporter M481_2942 PF13407 Periplasmic binding protein domain M481_2943 PF02653 Branched-chain amino acid transport system / permease component M481_2944 PF00596 Class II Aldolase and Adducin N-terminal domain M481_2945 PF04198 Putative sugar-binding domain M481_2946 PF00669 Bacterial flagellin N-terminal helical region M481_2947 PF00460 Flagella basal body rod protein M481_2947 PF06429 Flagellar basal body rod FlgEFG protein C-terminal M481_2948 PF10135 Rod binding protein M481_2948 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase M481_2949 PF02119 Flagellar P-ring protein M481_295 PF08479 POTRA domain, ShlB-type M481_295 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB M481_295 PF17287 POTRA domain M481_2950 PF02107 Flagellar L-ring protein M481_2951 PF00460 Flagella basal body rod protein M481_2951 PF06429 Flagellar basal body rod FlgEFG protein C-terminal M481_2952 PF06429 Flagellar basal body rod FlgEFG protein C-terminal M481_2952 PF00460 Flagella basal body rod protein M481_2953 PF07559 Flagellar basal body protein FlaE M481_2953 PF00460 Flagella basal body rod protein M481_2953 PF06429 Flagellar basal body rod FlgEFG protein C-terminal M481_2954 PF13860 FlgD Ig-like domain M481_2954 PF13861 FlgD Tudor-like domain M481_2954 PF03963 Flagellar hook capping protein - N-terminal region M481_2955 PF06429 Flagellar basal body rod FlgEFG protein C-terminal M481_2955 PF00460 Flagella basal body rod protein M481_2956 PF00460 Flagella basal body rod protein M481_2957 PF13144 Chaperone for flagella basal body P-ring formation M481_2957 PF17656 FlgA N-terminal domain M481_2958 PF04316 Anti-sigma-28 factor, FlgM M481_2959 PF05130 FlgN protein M481_296 PF04829 Pre-toxin domain with VENN motif M481_296 PF05860 haemagglutination activity domain M481_296 PF05594 Haemagluttinin repeat M481_296 PF13332 Hemagglutinin repeat M481_2960 PF11924 Inverse autotransporter, beta-domain M481_2960 PF07979 Intimin C-type lectin domain M481_2960 PF09134 Invasin, domain 3 M481_2960 PF02369 Bacterial Ig-like domain (group 1) M481_2962 PF09134 Invasin, domain 3 M481_2962 PF07979 Intimin C-type lectin domain M481_2962 PF11924 Inverse autotransporter, beta-domain M481_2962 PF02369 Bacterial Ig-like domain (group 1) M481_2963 PF06366 Flagellar protein FlhE M481_2964 PF00771 FHIPEP family M481_2965 PF01312 FlhB HrpN YscU SpaS Family M481_2968 PF10709 Protein of unknown function (DUF2511) M481_2970 PF04234 CopC domain M481_2971 PF00210 Ferritin-like domain M481_2972 PF06440 DNA polymerase III, theta subunit M481_2973 PF00561 alpha/beta hydrolase fold M481_2974 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain M481_2974 PF00326 Prolyl oligopeptidase family M481_2975 PF13995 YebF-like protein M481_2977 PF07130 YebG protein M481_2978 PF00271 Helicase conserved C-terminal domain M481_2978 PF00270 DEAD/DEAH box helicase M481_2978 PF03880 DbpA RNA binding domain M481_2979 PF02222 ATP-grasp domain M481_2980 PF03701 Uncharacterised protein family (UPF0181) M481_2981 PF00425 chorismate binding enzyme M481_2981 PF04715 Anthranilate synthase component I, N terminal region M481_2982 PF00293 NUDIX domain M481_2983 PF03315 Serine dehydratase beta chain M481_2983 PF03313 Serine dehydratase alpha chain M481_2984 PF01613 Flavin reductase like domain M481_2985 PF11794 4-hydroxyphenylacetate 3-hydroxylase N terminal M481_2985 PF03241 4-hydroxyphenylacetate 3-hydroxylase C terminal M481_2986 PF07690 Major Facilitator Superfamily M481_2987 PF03328 HpcH/HpaI aldolase/citrate lyase family M481_2988 PF01557 Fumarylacetoacetate (FAA) hydrolase family M481_2989 PF02962 5-carboxymethyl-2-hydroxymuconate isomerase M481_299 PF07690 Major Facilitator Superfamily M481_2990 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase M481_2991 PF00171 Aldehyde dehydrogenase family M481_2992 PF01557 Fumarylacetoacetate (FAA) hydrolase family M481_2993 PF01557 Fumarylacetoacetate (FAA) hydrolase family M481_2994 PF01047 MarR family M481_2995 PF03471 Transporter associated domain M481_2995 PF03741 Integral membrane protein TerC family M481_2996 PF03741 Integral membrane protein TerC family M481_2996 PF03471 Transporter associated domain M481_2997 PF03830 PTS system sorbose subfamily IIB component M481_2997 PF03610 PTS system fructose IIA component M481_2998 PF03609 PTS system sorbose-specific iic component M481_2999 PF03613 PTS system mannose/fructose/sorbose family IID component M481_3 PF01820 D-ala D-ala ligase N-terminus M481_3 PF07478 D-ala D-ala ligase C-terminus M481_30 PF12793 Sugar transport-related sRNA regulator N-term M481_30 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle M481_300 PF07730 Histidine kinase M481_300 PF05231 MASE1 M481_300 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M481_3000 PF06173 Protein of unknown function (DUF986) M481_3001 PF02659 Putative manganese efflux pump M481_3002 PF07715 TonB-dependent Receptor Plug Domain M481_3002 PF00593 TonB dependent receptor M481_3003 PF08448 PAS fold M481_3003 PF08447 PAS fold M481_3003 PF05231 MASE1 M481_3003 PF00990 Diguanylate cyclase, GGDEF domain M481_3003 PF00563 EAL domain M481_3003 PF13426 PAS domain M481_3005 PF13847 Methyltransferase domain M481_3007 PF00313 'Cold-shock' DNA-binding domain M481_3009 PF07017 Antimicrobial peptide resistance and lipid A acylation protein PagP M481_301 PF00072 Response regulator receiver domain M481_301 PF00196 Bacterial regulatory proteins, luxR family M481_3010 PF00324 Amino acid permease M481_3013 PF13974 YebO-like protein M481_3014 PF13996 YobH-like protein M481_3015 PF10964 Protein of unknown function (DUF2766) M481_3017 PF12833 Helix-turn-helix domain M481_3019 PF00664 ABC transporter transmembrane region M481_3019 PF00005 ABC transporter M481_302 PF00884 Sulfatase M481_302 PF08019 Phosphoethanolamine transferase EptA/EptB M481_3020 PF01797 Transposase IS200 like M481_3023 PF06167 Glucose-regulated metallo-peptidase M90 M481_3025 PF00356 Bacterial regulatory proteins, lacI family M481_3025 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family M481_3026 PF01306 LacY proton/sugar symporter M481_3027 PF16874 Glycosyl hydrolase family 36 C-terminal domain M481_3027 PF16875 Glycosyl hydrolase family 36 N-terminal domain M481_303 PF01695 IstB-like ATP binding protein M481_3030 PF01648 4'-phosphopantetheinyl transferase superfamily M481_3030 PF17837 4'-phosphopantetheinyl transferase N-terminal domain M481_3031 PF03480 Bacterial extracellular solute-binding protein, family 7 M481_3033 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component M481_3034 PF00196 Bacterial regulatory proteins, luxR family M481_3034 PF00072 Response regulator receiver domain M481_3036 PF09831 Uncharacterized protein conserved in bacteria (DUF2058) M481_3038 PF01522 Polysaccharide deacetylase M481_304 PF00665 Integrase core domain M481_304 PF02796 Helix-turn-helix domain of resolvase M481_3040 PF01554 MatE M481_3041 PF00764 Arginosuccinate synthase M481_3042 PF01070 FMN-dependent dehydrogenase M481_3044 PF13378 Enolase C-terminal domain-like M481_3044 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain M481_3045 PF01557 Fumarylacetoacetate (FAA) hydrolase family M481_3047 PF04134 Protein of unknown function, DUF393 M481_3048 PF07690 Major Facilitator Superfamily M481_3049 PF00872 Transposase, Mutator family M481_305 PF13673 Acetyltransferase (GNAT) domain M481_3050 PF09134 Invasin, domain 3 M481_3050 PF11924 Inverse autotransporter, beta-domain M481_3050 PF02369 Bacterial Ig-like domain (group 1) M481_3051 PF00872 Transposase, Mutator family M481_3052 PF04363 Protein of unknown function (DUF496) M481_3054 PF08411 Exonuclease C-terminal M481_3054 PF00929 Exonuclease M481_3055 PF13520 Amino acid permease M481_3057 PF00465 Iron-containing alcohol dehydrogenase M481_3058 PF00005 ABC transporter M481_3059 PF00005 ABC transporter M481_306 PF00485 Phosphoribulokinase / Uridine kinase family M481_3060 PF02653 Branched-chain amino acid transport system / permease component M481_3062 PF01370 NAD dependent epimerase/dehydratase family M481_3063 PF08029 HisG, C-terminal domain M481_3063 PF01634 ATP phosphoribosyltransferase M481_3064 PF00815 Histidinol dehydrogenase M481_3065 PF00155 Aminotransferase class I and II M481_3066 PF00475 Imidazoleglycerol-phosphate dehydratase M481_3067 PF00117 Glutamine amidotransferase class-I M481_3068 PF00977 Histidine biosynthesis protein M481_3069 PF00977 Histidine biosynthesis protein M481_307 PF03099 Biotin/lipoate A/B protein ligase family M481_307 PF02237 Biotin protein ligase C terminal domain M481_307 PF08279 HTH domain M481_3070 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase M481_3070 PF01502 Phosphoribosyl-AMP cyclohydrolase M481_3071 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain M481_3071 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase M481_3072 PF00483 Nucleotidyl transferase M481_3073 PF00483 Nucleotidyl transferase M481_3074 PF04183 IucA / IucC family M481_3074 PF06276 Ferric iron reductase FhuF-like transporter M481_3075 PF07715 TonB-dependent Receptor Plug Domain M481_3075 PF00593 TonB dependent receptor M481_3075 PF07660 Secretin and TonB N terminus short domain M481_3076 PF01497 Periplasmic binding protein M481_3077 PF01032 FecCD transport family M481_3078 PF01032 FecCD transport family M481_3079 PF00005 ABC transporter M481_308 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain M481_308 PF01565 FAD binding domain M481_3080 PF06276 Ferric iron reductase FhuF-like transporter M481_3080 PF04183 IucA / IucC family M481_3082 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) M481_3083 PF00282 Pyridoxal-dependent decarboxylase conserved domain M481_3084 PF11575 FhuF 2Fe-2S C-terminal domain M481_3084 PF06276 Ferric iron reductase FhuF-like transporter M481_3085 PF03471 Transporter associated domain M481_3085 PF00571 CBS domain M481_3085 PF03741 Integral membrane protein TerC family M481_3086 PF05170 AsmA family M481_3087 PF00692 dUTPase M481_3088 PF00485 Phosphoribulokinase / Uridine kinase family M481_3089 PF10609 NUBPL iron-transfer P-loop NTPase M481_3090 PF09334 tRNA synthetases class I (M) M481_3090 PF01588 Putative tRNA binding domain M481_3091 PF01797 Transposase IS200 like M481_3095 PF07690 Major Facilitator Superfamily M481_3096 PF03788 LrgA family M481_3097 PF04172 LrgB-like family M481_3098 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region M481_3098 PF08211 Cytidine and deoxycytidylate deaminase zinc-binding region M481_3099 PF00390 Malic enzyme, N-terminal domain M481_3099 PF03949 Malic enzyme, NAD binding domain M481_3100 PF02698 DUF218 domain M481_3101 PF02653 Branched-chain amino acid transport system / permease component M481_3102 PF02796 Helix-turn-helix domain of resolvase M481_3102 PF00665 Integrase core domain M481_3103 PF01695 IstB-like ATP binding protein M481_3104 PF02653 Branched-chain amino acid transport system / permease component M481_3105 PF00005 ABC transporter M481_3106 PF13407 Periplasmic binding protein domain M481_3107 PF04235 Protein of unknown function (DUF418) M481_3108 PF01227 GTP cyclohydrolase I M481_3109 PF06779 Uncharacterised MFS-type transporter YbfB M481_3110 PF03466 LysR substrate binding domain M481_3110 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M481_3111 PF00107 Zinc-binding dehydrogenase M481_3111 PF08240 Alcohol dehydrogenase GroES-like domain M481_3112 PF00756 Putative esterase M481_3115 PF13533 Biotin-lipoyl like M481_3116 PF00005 ABC transporter M481_3118 PF03453 MoeA N-terminal region (domain I and II) M481_3118 PF03454 MoeA C-terminal region (domain IV) M481_3118 PF00994 Probable molybdopterin binding domain M481_3119 PF00899 ThiF family M481_3121 PF00005 ABC transporter M481_3121 PF12848 ABC transporter M481_313 PF12724 Flavodoxin domain M481_314 PF02386 Cation transport protein M481_3140 PF17871 AAA lid domain M481_3140 PF07724 AAA domain (Cdc48 subfamily) M481_3140 PF00004 ATPase family associated with various cellular activities (AAA) M481_3140 PF10431 C-terminal, D2-small domain, of ClpB protein M481_3142 PF05736 OprF membrane domain M481_3142 PF00691 OmpA family M481_3148 PF00698 Acyl transferase domain M481_3149 PF00550 Phosphopantetheine attachment site M481_315 PF09186 Domain of unknown function (DUF1949) M481_315 PF01205 Uncharacterized protein family UPF0029 M481_3152 PF00378 Enoyl-CoA hydratase/isomerase M481_3154 PF08540 Hydroxymethylglutaryl-coenzyme A synthase C terminal M481_3154 PF01154 Hydroxymethylglutaryl-coenzyme A synthase N terminal M481_3156 PF02801 Beta-ketoacyl synthase, C-terminal domain M481_3156 PF00109 Beta-ketoacyl synthase, N-terminal domain M481_3157 PF07977 FabA-like domain M481_316 PF00557 Metallopeptidase family M24 M481_3160 PF08031 Berberine and berberine like M481_3160 PF01565 FAD binding domain M481_3164 PF13610 DDE domain M481_3166 PF04358 DsrC like protein M481_3167 PF00708 Acylphosphatase M481_3168 PF17785 PUA-like domain M481_3168 PF10672 S-adenosylmethionine-dependent methyltransferase M481_3169 PF08755 Hemimethylated DNA-binding protein YccV like M481_317 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain M481_317 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain M481_317 PF00378 Enoyl-CoA hydratase/isomerase M481_3170 PF13380 CoA binding domain M481_3171 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) M481_3172 PF02142 MGS-like domain M481_3173 PF00580 UvrD/REP helicase N-terminal domain M481_3173 PF13361 UvrD-like helicase C-terminal domain M481_3173 PF12462 DNA helicase IV / RNA helicase N terminal M481_3174 PF03733 Inner membrane component domain M481_3175 PF12805 FUSC-like inner membrane protein yccS M481_3176 PF04994 TfoX C-terminal domain M481_3176 PF04993 TfoX N-terminal domain M481_3177 PF03846 Cell division inhibitor SulA M481_3178 PF00691 OmpA family M481_3178 PF01389 OmpA-like transmembrane domain M481_3179 PF01797 Transposase IS200 like M481_318 PF02803 Thiolase, C-terminal domain M481_318 PF00108 Thiolase, N-terminal domain M481_3180 PF17414 MatP C-terminal ribbon-helix-helix domain M481_3180 PF06303 MatP N-terminal domain M481_3181 PF05362 Lon protease (S16) C-terminal proteolytic domain M481_3181 PF13654 AAA domain M481_3182 PF07977 FabA-like domain M481_3184 PF00109 Beta-ketoacyl synthase, N-terminal domain M481_3184 PF02801 Beta-ketoacyl synthase, C-terminal domain M481_3185 PF00665 Integrase core domain M481_3185 PF02796 Helix-turn-helix domain of resolvase M481_3187 PF01695 IstB-like ATP binding protein M481_3188 PF02801 Beta-ketoacyl synthase, C-terminal domain M481_3188 PF00109 Beta-ketoacyl synthase, N-terminal domain M481_3189 PF01797 Transposase IS200 like M481_319 PF00175 Oxidoreductase NAD-binding domain M481_319 PF00970 Oxidoreductase FAD-binding domain M481_3190 PF01648 4'-phosphopantetheinyl transferase superfamily M481_3191 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ M481_3192 PF11967 Recombination protein O N terminal M481_3192 PF02565 Recombination protein O C terminal M481_3193 PF01926 50S ribosome-binding GTPase M481_3193 PF07650 KH domain M481_3194 PF00035 Double-stranded RNA binding motif M481_3194 PF14622 Ribonuclease-III-like M481_3195 PF10502 Signal peptidase, peptidase S26 M481_3196 PF00679 Elongation factor G C-terminus M481_3196 PF00009 Elongation factor Tu GTP binding domain M481_3196 PF03144 Elongation factor Tu domain 2 M481_3196 PF06421 GTP-binding protein LepA C-terminus M481_3199 PF17188 MucB/RseB C-terminal domain M481_3199 PF03888 MucB/RseB N-terminal domain M481_320 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase M481_3200 PF03873 Anti sigma-E protein RseA, C-terminal domain M481_3200 PF03872 Anti sigma-E protein RseA, N-terminal domain M481_3201 PF04542 Sigma-70 region 2 M481_3201 PF08281 Sigma-70, region 4 M481_3202 PF00890 FAD binding domain M481_3202 PF02910 Fumarate reductase flavoprotein C-term M481_3203 PF05175 Methyltransferase small domain M481_3204 PF00270 DEAD/DEAH box helicase M481_3204 PF00271 Helicase conserved C-terminal domain M481_3206 PF12796 Ankyrin repeats (3 copies) M481_3209 PF01228 Glycine radical M481_321 PF02357 Transcription termination factor nusG M481_3210 PF03167 Uracil DNA glycosylase superfamily M481_3211 PF01470 Pyroglutamyl peptidase M481_3214 PF03746 LamB/YcsF family M481_3215 PF02626 Carboxyltransferase domain, subdomain A and B M481_3216 PF02682 Carboxyltransferase domain, subdomain C and D M481_3218 PF01784 NIF3 (NGG1p interacting factor 3) M481_3219 PF02112 cAMP phosphodiesterases class-II M481_322 PF00490 Delta-aminolevulinic acid dehydratase M481_3220 PF00875 DNA photolyase M481_3220 PF03441 FAD binding domain of DNA photolyase M481_3221 PF08349 Protein of unknown function (DUF1722) M481_3222 PF10725 Protein of unknown function (DUF2517) M481_3223 PF03814 Potassium-transporting ATPase A subunit M481_3225 PF02669 K+-transporting ATPase, c chain M481_3226 PF13493 Domain of unknown function (DUF4118) M481_3226 PF13492 GAF domain M481_3226 PF02702 Osmosensitive K+ channel His kinase sensor domain M481_3226 PF00512 His Kinase A (phospho-acceptor) domain M481_3226 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M481_3227 PF13492 GAF domain M481_3227 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M481_3227 PF00512 His Kinase A (phospho-acceptor) domain M481_3227 PF13493 Domain of unknown function (DUF4118) M481_3227 PF02702 Osmosensitive K+ channel His kinase sensor domain M481_3228 PF00072 Response regulator receiver domain M481_3228 PF00486 Transcriptional regulatory protein, C terminal M481_323 PF01026 TatD related DNase M481_3232 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I M481_3232 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain M481_3232 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III M481_3232 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II M481_3233 PF03925 SeqA protein C-terminal domain M481_3233 PF17206 SeqA protein N-terminal domain M481_3236 PF04794 YdjC-like protein M481_3237 PF12833 Helix-turn-helix domain M481_3237 PF07883 Cupin domain M481_3238 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit M481_3239 PF02378 Phosphotransferase system, EIIC M481_324 PF00902 Sec-independent protein translocase protein (TatC) M481_3240 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit M481_3241 PF02537 CrcB-like protein, Camphor Resistance (CrcB) M481_3242 PF02537 CrcB-like protein, Camphor Resistance (CrcB) M481_3243 PF02254 TrkA-N domain M481_3243 PF07885 Ion channel M481_3244 PF06411 HdeA/HdeB family M481_3245 PF03824 High-affinity nickel-transport protein M481_3246 PF03253 Urea transporter M481_3247 PF01774 UreD urease accessory protein M481_3248 PF02492 CobW/HypB/UreG, nucleotide-binding domain M481_3249 PF01730 UreF M481_3250 PF05194 UreE urease accessory protein, C-terminal domain M481_3250 PF02814 UreE urease accessory protein, N-terminal domain M481_3251 PF01979 Amidohydrolase family M481_3251 PF00449 Urease alpha-subunit, N-terminal domain M481_3252 PF00699 Urease beta subunit M481_3253 PF00547 Urease, gamma subunit M481_3255 PF00005 ABC transporter M481_3256 PF00005 ABC transporter M481_3257 PF12911 N-terminal TM domain of oligopeptide transport permease C M481_3257 PF00528 Binding-protein-dependent transport system inner membrane component M481_3258 PF00528 Binding-protein-dependent transport system inner membrane component M481_3259 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle M481_326 PF02416 mttA/Hcf106 family M481_3260 PF00313 'Cold-shock' DNA-binding domain M481_3262 PF06711 Protein of unknown function (DUF1198) M481_3263 PF09400 Protein of unknown function (DUF2002) M481_3264 PF06392 Acid shock protein repeat M481_3266 PF07972 NrdI Flavodoxin like M481_3267 PF08343 Ribonucleotide reductase N-terminal M481_3267 PF02867 Ribonucleotide reductase, barrel domain M481_3267 PF00317 Ribonucleotide reductase, all-alpha domain M481_3268 PF00268 Ribonucleotide reductase, small chain M481_3269 PF00005 ABC transporter M481_3269 PF00571 CBS domain M481_327 PF03109 ABC1 family M481_3270 PF00528 Binding-protein-dependent transport system inner membrane component M481_3271 PF04069 Substrate binding domain of ABC-type glycine betaine transport system M481_3273 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin M481_3275 PF00929 Exonuclease M481_3276 PF00075 RNase H M481_3277 PF08241 Methyltransferase domain M481_3278 PF16123 Hydroxyacylglutathione hydrolase C-terminus M481_3278 PF00753 Metallo-beta-lactamase superfamily M481_3279 PF01464 Transglycosylase SLT domain M481_3279 PF01476 LysM domain M481_328 PF02036 SCP-2 sterol transfer family M481_3280 PF03372 Endonuclease/Exonuclease/phosphatase family M481_3282 PF00248 Aldo/keto reductase family M481_3289 PF00005 ABC transporter M481_3289 PF09383 NIL domain M481_329 PF01209 ubiE/COQ5 methyltransferase family M481_3290 PF00528 Binding-protein-dependent transport system inner membrane component M481_3291 PF03180 NLPA lipoprotein M481_3292 PF16358 RcsF lipoprotein M481_3293 PF01980 tRNA-methyltransferase O M481_3293 PF18389 TrmO C-terminal domain M481_3294 PF04073 Aminoacyl-tRNA editing domain M481_3294 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) M481_3294 PF03129 Anticodon binding domain M481_3295 PF17185 NlpE C-terminal OB domain M481_3295 PF04170 NlpE N-terminal domain M481_3296 PF00472 RF-1 domain M481_3297 PF07152 YaeQ protein M481_3298 PF06786 Uncharacterised protein family (UPF0253) M481_3299 PF07073 Modulator of Rho-dependent transcription termination (ROF) M481_33 PF00528 Binding-protein-dependent transport system inner membrane component M481_330 PF02646 RmuC family M481_3300 PF00034 Cytochrome c M481_3301 PF11734 TilS substrate C-terminal domain M481_3301 PF01171 PP-loop family M481_3301 PF09179 TilS substrate binding domain M481_3302 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily M481_3303 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit M481_3304 PF17657 Bacterial DNA polymerase III alpha subunit finger domain M481_3304 PF07733 Bacterial DNA polymerase III alpha NTPase domain M481_3304 PF01336 OB-fold nucleic acid binding domain M481_3304 PF02811 PHP domain M481_3304 PF14579 Helix-hairpin-helix motif M481_3305 PF01351 Ribonuclease HII M481_3306 PF02684 Lipid-A-disaccharide synthetase M481_3307 PF00132 Bacterial transferase hexapeptide (six repeats) M481_3307 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 M481_3308 PF07977 FabA-like domain M481_3309 PF00132 Bacterial transferase hexapeptide (six repeats) M481_3309 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD M481_331 PF09335 SNARE associated Golgi protein M481_3310 PF03938 Outer membrane protein (OmpH-like) M481_3311 PF01103 Surface antigen M481_3311 PF07244 Surface antigen variable number repeat M481_3312 PF17820 PDZ domain M481_3312 PF02163 Peptidase family M50 M481_3314 PF01255 Putative undecaprenyl diphosphate synthase M481_3315 PF13288 DXP reductoisomerase C-terminal domain M481_3315 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase M481_3315 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain M481_3316 PF01765 Ribosome recycling factor M481_3317 PF00696 Amino acid kinase family M481_3318 PF00889 Elongation factor TS M481_3319 PF00318 Ribosomal protein S2 M481_332 PF02554 Carbon starvation protein CstA M481_332 PF13722 5TM C-terminal transporter carbon starvation CstA M481_3320 PF00557 Metallopeptidase family M24 M481_3321 PF01842 ACT domain M481_3321 PF08335 GlnD PII-uridylyltransferase M481_3321 PF01966 HD domain M481_3321 PF01909 Nucleotidyltransferase domain M481_3322 PF00132 Bacterial transferase hexapeptide (six repeats) M481_3322 PF14602 Hexapeptide repeat of succinyl-transferase M481_3322 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal M481_3323 PF11944 Protein of unknown function (DUF3461) M481_3324 PF00258 Flavodoxin M481_3325 PF00849 RNA pseudouridylate synthase M481_3326 PF04287 tRNA pseudouridine synthase C M481_3327 PF01797 Transposase IS200 like M481_3328 PF07348 Syd protein (SUKH-2) M481_3329 PF14489 QueF-like protein M481_3329 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term M481_3330 PF11892 Domain of unknown function (DUF3412) M481_3330 PF03641 Possible lysine decarboxylase M481_3330 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases M481_3331 PF01367 5'-3' exonuclease, C-terminal SAM fold M481_3331 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain M481_3332 PF18125 RlmM ferredoxin-like domain M481_3332 PF01728 FtsJ-like methyltransferase M481_3333 PF04241 Protein of unknown function (DUF423) M481_3334 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M481_3334 PF03466 LysR substrate binding domain M481_3336 PF00266 Aminotransferase class-V M481_3337 PF02657 Fe-S metabolism associated domain M481_3338 PF00899 ThiF family M481_3339 PF06725 3D domain M481_3339 PF03562 MltA specific insert domain M481_334 PF01048 Phosphorylase superfamily M481_3343 PF11741 AMIN domain M481_3343 PF01520 N-acetylmuramoyl-L-alanine amidase M481_3344 PF00696 Amino acid kinase family M481_3344 PF00583 Acetyltransferase (GNAT) family M481_3345 PF00665 Integrase core domain M481_3345 PF02796 Helix-turn-helix domain of resolvase M481_3347 PF01695 IstB-like ATP binding protein M481_3348 PF00696 Amino acid kinase family M481_3348 PF00583 Acetyltransferase (GNAT) family M481_3349 PF13538 UvrD-like helicase C-terminal domain M481_335 PF01738 Dienelactone hydrolase family M481_3350 PF00580 UvrD/REP helicase N-terminal domain M481_3350 PF12705 PD-(D/E)XK nuclease superfamily M481_3350 PF13361 UvrD-like helicase C-terminal domain M481_3351 PF16187 Middle or third domain of peptidase_M16 M481_3351 PF05193 Peptidase M16 inactive domain M481_3351 PF00675 Insulinase (Peptidase family M16) M481_3352 PF17946 RecC C-terminal domain M481_3358 PF00303 Thymidylate synthase M481_3359 PF01790 Prolipoprotein diacylglyceryl transferase M481_336 PF01717 Cobalamin-independent synthase, Catalytic domain M481_336 PF08267 Cobalamin-independent synthase, N-terminal domain M481_3360 PF05524 PEP-utilising enzyme, N-terminal M481_3360 PF00391 PEP-utilising enzyme, mobile domain M481_3360 PF02896 PEP-utilising enzyme, TIM barrel domain M481_3360 PF01590 GAF domain M481_3361 PF00293 NUDIX domain M481_3362 PF02976 DNA mismatch repair enzyme MutH M481_3363 PF00248 Aldo/keto reductase family M481_3366 PF07690 Major Facilitator Superfamily M481_3367 PF00501 AMP-binding enzyme M481_3367 PF01553 Acyltransferase M481_3367 PF13193 AMP-binding enzyme C-terminal domain M481_3368 PF00384 Molybdopterin oxidoreductase M481_3368 PF01568 Molydopterin dinucleotide binding domain M481_3369 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain M481_3369 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain M481_337 PF00892 EamA-like transporter family M481_3370 PF00356 Bacterial regulatory proteins, lacI family M481_3371 PF07690 Major Facilitator Superfamily M481_3372 PF03466 LysR substrate binding domain M481_3372 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M481_3373 PF03466 LysR substrate binding domain M481_3373 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M481_3375 PF02203 Tar ligand binding domain homologue M481_3375 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain M481_3375 PF00672 HAMP domain M481_3378 PF00872 Transposase, Mutator family M481_338 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M481_338 PF03466 LysR substrate binding domain M481_3380 PF06750 Bacterial Peptidase A24 N-terminal domain M481_3380 PF01478 Type IV leader peptidase family M481_3388 PF07963 Prokaryotic N-terminal methylation motif M481_3388 PF08334 Type II secretion system (T2SS), protein G M481_3389 PF00482 Type II secretion system (T2SS), protein F M481_339 PF03547 Membrane transport protein M481_3392 PF03958 Bacterial type II/III secretion system short domain M481_3392 PF00263 Bacterial type II and III secretion system protein M481_3395 PF00484 Carbonic anhydrase M481_3399 PF09093 Lyase, catalytic M481_3399 PF02884 Polysaccharide lyase family 8, C-terminal beta-sandwich domain M481_3399 PF02278 Polysaccharide lyase family 8, super-sandwich domain M481_3399 PF09092 Lyase, N terminal M481_34 PF00005 ABC transporter M481_340 PF03009 Glycerophosphoryl diester phosphodiesterase family M481_3400 PF01695 IstB-like ATP binding protein M481_3401 PF00665 Integrase core domain M481_3401 PF02796 Helix-turn-helix domain of resolvase M481_3403 PF00884 Sulfatase M481_3404 PF08220 DeoR-like helix-turn-helix domain M481_3404 PF00455 DeoR C terminal sensor domain M481_3405 PF08013 Tagatose 6 phosphate kinase M481_3406 PF01380 SIS domain M481_3407 PF03830 PTS system sorbose subfamily IIB component M481_3408 PF03609 PTS system sorbose-specific iic component M481_3409 PF03613 PTS system mannose/fructose/sorbose family IID component M481_341 PF00005 ABC transporter M481_341 PF17912 MalK OB fold domain M481_3410 PF03610 PTS system fructose IIA component M481_3411 PF01979 Amidohydrolase family M481_3414 PF04055 Radical SAM superfamily M481_3414 PF13186 Iron-sulfur cluster-binding domain M481_3415 PF00884 Sulfatase M481_3417 PF01116 Fructose-bisphosphate aldolase class-II M481_342 PF00528 Binding-protein-dependent transport system inner membrane component M481_3420 PF00356 Bacterial regulatory proteins, lacI family M481_3421 PF07690 Major Facilitator Superfamily M481_3422 PF13802 Galactose mutarotase-like M481_3422 PF01055 Glycosyl hydrolases family 31 M481_3422 PF17137 Domain of unknown function (DUF5110) M481_3422 PF16338 Domain of unknown function (DUF4968) M481_3423 PF00356 Bacterial regulatory proteins, lacI family M481_3424 PF02264 LamB porin M481_3425 PF00367 phosphotransferase system, EIIB M481_3425 PF02378 Phosphotransferase system, EIIC M481_3426 PF08533 Beta-galactosidase C-terminal domain M481_3426 PF02449 Beta-galactosidase M481_3426 PF08532 Beta-galactosidase trimerisation domain M481_3427 PF08532 Beta-galactosidase trimerisation domain M481_3427 PF02449 Beta-galactosidase M481_3427 PF08533 Beta-galactosidase C-terminal domain M481_3428 PF07745 Glycosyl hydrolase family 53 M481_3429 PF00528 Binding-protein-dependent transport system inner membrane component M481_343 PF00528 Binding-protein-dependent transport system inner membrane component M481_3430 PF00528 Binding-protein-dependent transport system inner membrane component M481_3431 PF13416 Bacterial extracellular solute-binding protein M481_3432 PF00005 ABC transporter M481_3432 PF17912 MalK OB fold domain M481_3433 PF00005 ABC transporter M481_3434 PF02653 Branched-chain amino acid transport system / permease component M481_3435 PF13407 Periplasmic binding protein domain M481_3437 PF05708 Permuted papain-like amidase enzyme, YaeF/YiiX, C92 family M481_3438 PF03551 Transcriptional regulator PadR-like family M481_344 PF13416 Bacterial extracellular solute-binding protein M481_3455 PF15731 Antitoxin component of bacterial toxin-antitoxin system, MqsA M481_3456 PF15723 Motility quorum-sensing regulator, toxin of MqsA M481_3460 PF13356 Arm DNA-binding domain M481_3460 PF00589 Phage integrase family M481_3460 PF14659 Phage integrase, N-terminal SAM-like domain M481_3462 PF01336 OB-fold nucleic acid binding domain M481_3462 PF00152 tRNA synthetases class II (D, K and N) M481_3463 PF03462 PCRF domain M481_3463 PF00472 RF-1 domain M481_3464 PF01368 DHH family M481_3464 PF17768 RecJ OB domain M481_3464 PF02272 DHHA1 domain M481_3465 PF13098 Thioredoxin-like domain M481_3465 PF10411 Disulfide bond isomerase protein N-terminus M481_3466 PF00589 Phage integrase family M481_3466 PF02899 Phage integrase, N-terminal SAM-like domain M481_3467 PF00258 Flavodoxin M481_3468 PF06123 Inner membrane protein CreD M481_3469 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M481_3469 PF00512 His Kinase A (phospho-acceptor) domain M481_3469 PF00672 HAMP domain M481_3470 PF00486 Transcriptional regulatory protein, C terminal M481_3470 PF00072 Response regulator receiver domain M481_3471 PF03937 Flavinator of succinate dehydrogenase M481_3472 PF01571 Aminomethyltransferase folate-binding domain M481_3474 PF03006 Haemolysin-III related M481_3476 PF05662 Coiled stalk of trimeric autotransporter adhesin M481_3476 PF13018 Extended Signal Peptide of Type V secretion system M481_3476 PF05658 Head domain of trimeric autotransporter adhesin M481_3476 PF03895 YadA-like membrane anchor domain M481_3479 PF02347 Glycine cleavage system P-protein M481_3480 PF01597 Glycine cleavage H-protein M481_3481 PF01571 Aminomethyltransferase folate-binding domain M481_3481 PF08669 Glycine cleavage T-protein C-terminal barrel domain M481_3482 PF01494 FAD binding domain M481_3483 PF01494 FAD binding domain M481_3484 PF05195 Aminopeptidase P, N-terminal domain M481_3484 PF00557 Metallopeptidase family M24 M481_3485 PF03695 Uncharacterised protein family (UPF0149) M481_3486 PF05164 Cell division protein ZapA M481_3487 PF01812 5-formyltetrahydrofolate cyclo-ligase family M481_3488 PF01797 Transposase IS200 like M481_3489 PF01842 ACT domain M481_3489 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain M481_3489 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain M481_3490 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) M481_3491 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M481_3491 PF03466 LysR substrate binding domain M481_3492 PF04402 Protein of unknown function (DUF541) M481_3493 PF01810 LysE type translocator M481_3494 PF00924 Mechanosensitive ion channel M481_3494 PF05552 Conserved TM helix M481_3495 PF01116 Fructose-bisphosphate aldolase class-II M481_3496 PF00162 Phosphoglycerate kinase M481_3497 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain M481_3497 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain M481_3499 PF02779 Transketolase, pyrimidine binding domain M481_3499 PF02780 Transketolase, C-terminal domain M481_3499 PF00456 Transketolase, thiamine diphosphate binding domain M481_35 PF09335 SNARE associated Golgi protein M481_3500 PF01435 Peptidase family M48 M481_3502 PF17944 Arginine decarboxylase C-terminal helical extension M481_3502 PF17810 Arginine decarboxylase helical bundle domain M481_3502 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain M481_3504 PF02773 S-adenosylmethionine synthetase, C-terminal domain M481_3504 PF00438 S-adenosylmethionine synthetase, N-terminal domain M481_3504 PF02772 S-adenosylmethionine synthetase, central domain M481_3505 PF17283 SprT-like zinc ribbon domain M481_3505 PF10263 SprT-like family M481_3506 PF04231 Endonuclease I M481_3507 PF04452 RNA methyltransferase M481_3508 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain M481_3508 PF02951 Prokaryotic glutathione synthetase, N-terminal domain M481_3509 PF02622 Uncharacterized ACR, COG1678 M481_3510 PF03652 Holliday junction resolvase M481_3511 PF00795 Carbon-nitrogen hydrolase M481_3512 PF04371 Porphyromonas-type peptidyl-arginine deiminase M481_3513 PF00437 Type II/IV secretion system protein M481_3514 PF01168 Alanine racemase, N-terminal domain M481_3515 PF03807 NADP oxidoreductase coenzyme F420-dependent M481_3515 PF14748 Pyrroline-5-carboxylate reductase dimerisation M481_3516 PF02325 YGGT family M481_3517 PF02594 Uncharacterised ACR, YggU family COG1872 M481_3518 PF01725 Ham1 family M481_3519 PF04055 Radical SAM superfamily M481_3519 PF06969 HemN C-terminal domain M481_352 PF00005 ABC transporter M481_3520 PF16671 Actin cross-linking domain M481_3520 PF11647 Membrane Localization Domain M481_3520 PF11713 Peptidase C80 family M481_3520 PF07634 RtxA repeat M481_3520 PF12146 Serine aminopeptidase, S33 M481_3521 PF11101 Protein of unknown function (DUF2884) M481_3522 PF11101 Protein of unknown function (DUF2884) M481_3523 PF04960 Glutaminase M481_3524 PF04320 Protein with unknown function (DUF469) M481_3525 PF02390 Putative methyltransferase M481_3526 PF00633 Helix-hairpin-helix motif M481_3526 PF14815 NUDIX domain M481_3526 PF10576 Iron-sulfur binding domain of endonuclease III M481_3526 PF00730 HhH-GPD superfamily base excision DNA repair protein M481_3527 PF04362 Bacterial Fe(2+) trafficking M481_3528 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain M481_3528 PF01464 Transglycosylase SLT domain M481_353 PF12399 Branched-chain amino acid ATP-binding cassette transporter M481_353 PF00005 ABC transporter M481_3530 PF07715 TonB-dependent Receptor Plug Domain M481_3531 PF02653 Branched-chain amino acid transport system / permease component M481_3532 PF00005 ABC transporter M481_3533 PF13407 Periplasmic binding protein domain M481_3534 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain M481_3534 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain M481_3534 PF01276 Orn/Lys/Arg decarboxylase, major domain M481_3536 PF02899 Phage integrase, N-terminal SAM-like domain M481_3536 PF00589 Phage integrase family M481_3538 PF03400 IS1 transposase M481_3539 PF03811 InsA N-terminal domain M481_3539 PF12759 InsA C-terminal domain M481_354 PF11862 Domain of unknown function (DUF3382) M481_354 PF02653 Branched-chain amino acid transport system / permease component M481_3543 PF10431 C-terminal, D2-small domain, of ClpB protein M481_3543 PF17871 AAA lid domain M481_3543 PF07724 AAA domain (Cdc48 subfamily) M481_3543 PF00004 ATPase family associated with various cellular activities (AAA) M481_3545 PF00691 OmpA family M481_3545 PF05736 OprF membrane domain M481_355 PF02653 Branched-chain amino acid transport system / permease component M481_3552 PF12759 InsA C-terminal domain M481_3552 PF03811 InsA N-terminal domain M481_3554 PF02517 CPBP intramembrane metalloprotease M481_3556 PF00196 Bacterial regulatory proteins, luxR family M481_3556 PF03472 Autoinducer binding domain M481_3557 PF00765 Autoinducer synthase M481_356 PF13458 Periplasmic binding protein M481_3561 PF06276 Ferric iron reductase FhuF-like transporter M481_3561 PF04183 IucA / IucC family M481_3562 PF06276 Ferric iron reductase FhuF-like transporter M481_3562 PF04183 IucA / IucC family M481_3564 PF06276 Ferric iron reductase FhuF-like transporter M481_3564 PF04183 IucA / IucC family M481_3565 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) M481_3566 PF07715 TonB-dependent Receptor Plug Domain M481_3566 PF00593 TonB dependent receptor M481_3568 PF00665 Integrase core domain M481_3568 PF13333 Integrase core domain M481_3568 PF13276 HTH-like domain M481_357 PF12568 Acetyltransferase (GNAT) domain, PanZ M481_3570 PF05433 Glycine zipper 2TM domain M481_3574 PF13677 Membrane MotB of proton-channel complex MotA/MotB M481_3574 PF00691 OmpA family M481_3575 PF01618 MotA/TolQ/ExbB proton channel family M481_3576 PF04542 Sigma-70 region 2 M481_3576 PF04545 Sigma-70, region 4 M481_358 PF01797 Transposase IS200 like M481_3581 PF07196 Flagellin hook IN motif M481_3581 PF07195 Flagellar hook-associated protein 2 C-terminus M481_3581 PF02465 Flagellar hook-associated protein 2 N-terminus M481_3582 PF00669 Bacterial flagellin N-terminal helical region M481_3582 PF00700 Bacterial flagellin C-terminal helical region M481_3583 PF00872 Transposase, Mutator family M481_3584 PF00700 Bacterial flagellin C-terminal helical region M481_3584 PF00669 Bacterial flagellin N-terminal helical region M481_3585 PF00669 Bacterial flagellin N-terminal helical region M481_3585 PF00700 Bacterial flagellin C-terminal helical region M481_3586 PF00700 Bacterial flagellin C-terminal helical region M481_3586 PF00669 Bacterial flagellin N-terminal helical region M481_3587 PF18500 CadC C-terminal domain 1 M481_3587 PF00486 Transcriptional regulatory protein, C terminal M481_359 PF04542 Sigma-70 region 2 M481_359 PF04545 Sigma-70, region 4 M481_359 PF00140 Sigma-70 factor, region 1.2 M481_3591 PF00460 Flagella basal body rod protein M481_3591 PF06429 Flagellar basal body rod FlgEFG protein C-terminal M481_3593 PF02119 Flagellar P-ring protein M481_3594 PF02107 Flagellar L-ring protein M481_3595 PF00460 Flagella basal body rod protein M481_3595 PF06429 Flagellar basal body rod FlgEFG protein C-terminal M481_3596 PF06429 Flagellar basal body rod FlgEFG protein C-terminal M481_3596 PF00460 Flagella basal body rod protein M481_3597 PF06429 Flagellar basal body rod FlgEFG protein C-terminal M481_3597 PF07559 Flagellar basal body protein FlaE M481_3597 PF00460 Flagella basal body rod protein M481_3598 PF03963 Flagellar hook capping protein - N-terminal region M481_3598 PF13860 FlgD Ig-like domain M481_3598 PF13861 FlgD Tudor-like domain M481_3599 PF00460 Flagella basal body rod protein M481_3599 PF06429 Flagellar basal body rod FlgEFG protein C-terminal M481_36 PF03104 DNA polymerase family B, exonuclease domain M481_36 PF00136 DNA polymerase family B M481_360 PF02687 FtsX-like permease family M481_360 PF18075 FtsX extracellular domain M481_3600 PF00460 Flagella basal body rod protein M481_3601 PF13144 Chaperone for flagella basal body P-ring formation M481_3605 PF18269 T3SS EscN ATPase C-terminal domain M481_3605 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain M481_3608 PF08345 Flagellar M-ring protein C-terminal M481_3608 PF01514 Secretory protein of YscJ/FliF family M481_3609 PF02049 Flagellar hook-basal body complex protein FliE M481_361 PF00005 ABC transporter M481_3610 PF02954 Bacterial regulatory protein, Fis family M481_3610 PF00072 Response regulator receiver domain M481_3610 PF00158 Sigma-54 interaction domain M481_3612 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term M481_3613 PF00813 FliP family M481_3614 PF01313 Bacterial export proteins, family 3 M481_3615 PF01311 Bacterial export proteins, family 1 M481_3616 PF01312 FlhB HrpN YscU SpaS Family M481_3617 PF00771 FHIPEP family M481_362 PF00448 SRP54-type protein, GTPase domain M481_362 PF02881 SRP54-type protein, helical bundle domain M481_362 PF02881 SRP54-type protein, helical bundle domain M481_362 PF00448 SRP54-type protein, GTPase domain M481_3620 PF01497 Periplasmic binding protein M481_3621 PF00419 Fimbrial protein M481_3621 PF09222 Fimbrial adhesin F17-AG, lectin domain M481_3623 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain M481_3623 PF02753 Pili assembly chaperone PapD, C-terminal domain M481_3624 PF13953 PapC C-terminal domain M481_3624 PF00577 Outer membrane usher protein M481_3624 PF13954 PapC N-terminal domain M481_3628 PF04972 BON domain M481_3628 PF00263 Bacterial type II and III secretion system protein M481_3628 PF13629 Pilus formation protein N terminal region M481_3629 PF04972 BON domain M481_3629 PF13629 Pilus formation protein N terminal region M481_3629 PF00263 Bacterial type II and III secretion system protein M481_3632 PF00437 Type II/IV secretion system protein M481_3639 PF02472 Biopolymer transport protein ExbD/TolR M481_364 PF06611 Protein of unknown function (DUF1145) M481_3641 PF01618 MotA/TolQ/ExbB proton channel family M481_3642 PF01053 Cys/Met metabolism PLP-dependent enzyme M481_3643 PF09335 SNARE associated Golgi protein M481_3644 PF12833 Helix-turn-helix domain M481_3644 PF06719 AraC-type transcriptional regulator N-terminus M481_3645 PF00465 Iron-containing alcohol dehydrogenase M481_3646 PF00248 Aldo/keto reductase family M481_3647 PF04055 Radical SAM superfamily M481_3647 PF08497 Radical SAM N-terminal M481_3647 PF11842 Domain of unknown function (DUF3362) M481_3648 PF11842 Domain of unknown function (DUF3362) M481_3648 PF08497 Radical SAM N-terminal M481_3648 PF04055 Radical SAM superfamily M481_3649 PF07731 Multicopper oxidase M481_3649 PF07732 Multicopper oxidase M481_3650 PF01553 Acyltransferase M481_3651 PF03989 DNA gyrase C-terminal domain, beta-propeller M481_3651 PF00521 DNA gyrase/topoisomerase IV, subunit A M481_3652 PF02525 Flavodoxin-like fold M481_3653 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M481_3653 PF03466 LysR substrate binding domain M481_3654 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M481_3654 PF01751 Toprim domain M481_3654 PF00204 DNA gyrase B M481_3654 PF00986 DNA gyrase B subunit, carboxyl terminus M481_3655 PF05728 Uncharacterised protein family (UPF0227) M481_3656 PF00149 Calcineurin-like phosphoesterase M481_3657 PF06853 Protein of unknown function (DUF1249) M481_3658 PF00293 NUDIX domain M481_3659 PF02321 Outer membrane efflux protein M481_3661 PF06693 Protein of unknown function (DUF1190) M481_3662 PF03738 Glutathionylspermidine synthase preATP-grasp M481_3663 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase M481_3664 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase M481_3666 PF04380 Membrane fusogenic activity M481_3667 PF13520 Amino acid permease M481_3668 PF01467 Cytidylyltransferase-like M481_3668 PF00294 pfkB family carbohydrate kinase M481_3669 PF03710 Glutamate-ammonia ligase adenylyltransferase M481_3669 PF08335 GlnD PII-uridylyltransferase M481_367 PF07947 YhhN family M481_3670 PF01928 CYTH domain M481_3671 PF08239 Bacterial SH3 domain M481_3672 PF12627 Probable RNA and SrmB- binding site of polymerase A M481_3672 PF01966 HD domain M481_3672 PF01743 Poly A polymerase head domain M481_3673 PF02673 Bacitracin resistance protein BacA M481_3674 PF02152 Dihydroneopterin aldolase M481_3675 PF02660 Glycerol-3-phosphate acyltransferase M481_3676 PF00814 Glycoprotease family M481_3677 PF01165 Ribosomal protein S21 M481_3678 PF01807 CHC2 zinc finger M481_3678 PF08275 DNA primase catalytic core, N-terminal domain M481_3678 PF08278 DNA primase DnaG DnaB-binding M481_3678 PF10410 DnaB-helicase binding domain of primase M481_3679 PF04546 Sigma-70, non-essential region M481_3679 PF00140 Sigma-70 factor, region 1.2 M481_3679 PF04542 Sigma-70 region 2 M481_3679 PF04539 Sigma-70 region 3 M481_3679 PF04545 Sigma-70, region 4 M481_3679 PF03979 Sigma-70 factor, region 1.1 M481_368 PF00403 Heavy-metal-associated domain M481_369 PF01206 Sulfurtransferase TusA M481_3690 PF02796 Helix-turn-helix domain of resolvase M481_3690 PF00665 Integrase core domain M481_3691 PF01695 IstB-like ATP binding protein M481_3692 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M481_3692 PF03466 LysR substrate binding domain M481_3696 PF01042 Endoribonuclease L-PSP M481_37 PF00271 Helicase conserved C-terminal domain M481_37 PF12137 RNA polymerase recycling family C-terminal M481_37 PF00176 SNF2 family N-terminal domain M481_37 PF18339 RapA N-terminal Tudor like domain 1 M481_37 PF18337 RapA N-terminal Tudor like domain M481_370 PF02592 Putative vitamin uptake transporter M481_3703 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion M481_3703 PF00529 HlyD membrane-fusion protein of T1SS M481_3704 PF04632 Fusaric acid resistance protein family M481_3706 PF00933 Glycosyl hydrolase family 3 N terminal domain M481_3706 PF01915 Glycosyl hydrolase family 3 C-terminal domain M481_3706 PF14310 Fibronectin type III-like domain M481_3708 PF00528 Binding-protein-dependent transport system inner membrane component M481_3709 PF00528 Binding-protein-dependent transport system inner membrane component M481_371 PF08786 DcrB M481_3710 PF13416 Bacterial extracellular solute-binding protein M481_3711 PF00356 Bacterial regulatory proteins, lacI family M481_3712 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain M481_3713 PF17912 MalK OB fold domain M481_3713 PF00005 ABC transporter M481_3713 PF03459 TOBE domain M481_3717 PF13018 Extended Signal Peptide of Type V secretion system M481_3717 PF04829 Pre-toxin domain with VENN motif M481_3717 PF05860 haemagglutination activity domain M481_3717 PF13332 Hemagglutinin repeat M481_3719 PF13332 Hemagglutinin repeat M481_3719 PF04829 Pre-toxin domain with VENN motif M481_3719 PF13018 Extended Signal Peptide of Type V secretion system M481_3719 PF05860 haemagglutination activity domain M481_372 PF02754 Cysteine-rich domain M481_372 PF13183 4Fe-4S dicluster domain M481_3721 PF04829 Pre-toxin domain with VENN motif M481_3721 PF13332 Hemagglutinin repeat M481_3721 PF05860 haemagglutination activity domain M481_3721 PF13018 Extended Signal Peptide of Type V secretion system M481_3722 PF17287 POTRA domain M481_3722 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB M481_3722 PF08479 POTRA domain, ShlB-type M481_3723 PF00092 von Willebrand factor type A domain M481_3724 PF02342 TerD domain M481_373 PF00890 FAD binding domain M481_3730 PF03729 Short repeat of unknown function (DUF308) M481_3731 PF00724 NADH:flavin oxidoreductase / NADH oxidase family M481_3731 PF07992 Pyridine nucleotide-disulphide oxidoreductase M481_3732 PF05175 Methyltransferase small domain M481_3733 PF03797 Autotransporter beta-domain M481_3734 PF01863 Protein of unknown function DUF45 M481_3735 PF01408 Oxidoreductase family, NAD-binding Rossmann fold M481_3736 PF00375 Sodium:dicarboxylate symporter family M481_3738 PF01797 Transposase IS200 like M481_3739 PF10688 Bacterial inner membrane protein M481_374 PF04324 BFD-like [2Fe-2S] binding domain M481_374 PF01266 FAD dependent oxidoreductase M481_3740 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus M481_3740 PF08666 SAF domain M481_3741 PF01232 Mannitol dehydrogenase Rossmann domain M481_3741 PF08125 Mannitol dehydrogenase C-terminal domain M481_3742 PF02614 Glucuronate isomerase M481_3743 PF07690 Major Facilitator Superfamily M481_3744 PF07690 Major Facilitator Superfamily M481_3745 PF07729 FCD domain M481_3745 PF00392 Bacterial regulatory proteins, gntR family M481_3747 PF09335 SNARE associated Golgi protein M481_3748 PF13721 SecD export protein N-terminal TM region M481_375 PF03009 Glycerophosphoryl diester phosphodiesterase family M481_3750 PF05957 Bacterial protein of unknown function (DUF883) M481_3751 PF07332 Putative Actinobacterial Holin-X, holin superfamily III M481_3753 PF07681 DoxX M481_3754 PF13409 Glutathione S-transferase, N-terminal domain M481_3755 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M481_3755 PF03466 LysR substrate binding domain M481_3756 PF17954 Quercetinase C-terminal cupin domain M481_3756 PF02678 Pirin M481_3757 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases M481_3758 PF04348 LppC putative lipoprotein M481_3759 PF02021 Uncharacterised protein family UPF0102 M481_3760 PF13580 SIS domain M481_3761 PF04972 BON domain M481_3762 PF00912 Transglycosylase M481_3764 PF00072 Response regulator receiver domain M481_3764 PF00989 PAS fold M481_3764 PF01627 Hpt domain M481_3764 PF18415 Histidine kinase receptor ArcB trans-membrane domain M481_3764 PF00512 His Kinase A (phospho-acceptor) domain M481_3764 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M481_3765 PF16199 Radical_SAM C-terminal domain M481_3765 PF04055 Radical SAM superfamily M481_3766 PF01645 Conserved region in glutamate synthase M481_3766 PF04898 Glutamate synthase central domain M481_3766 PF00310 Glutamine amidotransferases class-II M481_3766 PF01493 GXGXG motif M481_3767 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster M481_3767 PF07992 Pyridine nucleotide-disulphide oxidoreductase M481_3769 PF04386 Stringent starvation protein B M481_3770 PF00043 Glutathione S-transferase, C-terminal domain M481_3770 PF02798 Glutathione S-transferase, N-terminal domain M481_3771 PF00380 Ribosomal protein S9/S16 M481_3772 PF00572 Ribosomal protein L13 M481_3773 PF03969 AFG1-like ATPase M481_3774 PF06295 Protein of unknown function (DUF1043) M481_3775 PF13180 PDZ domain M481_3775 PF00595 PDZ domain M481_3776 PF01797 Transposase IS200 like M481_3777 PF13180 PDZ domain M481_3778 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) M481_3779 PF01722 BolA-like protein M481_378 PF12146 Serine aminopeptidase, S33 M481_3780 PF13466 STAS domain M481_3781 PF05494 MlaC protein M481_3782 PF02470 MlaD protein M481_3783 PF02405 Permease MlaE M481_3784 PF00005 ABC transporter M481_3785 PF01699 Sodium/calcium exchanger protein M481_3786 PF00571 CBS domain M481_3786 PF01380 SIS domain M481_3788 PF06835 Lipopolysaccharide-assembly, LptC-related M481_3789 PF03968 OstA-like protein M481_379 PF01810 LysE type translocator M481_3790 PF12399 Branched-chain amino acid ATP-binding cassette transporter M481_3790 PF00005 ABC transporter M481_3791 PF00309 Sigma-54 factor, Activator interacting domain (AID) M481_3791 PF04552 Sigma-54, DNA binding domain M481_3791 PF04963 Sigma-54 factor, core binding domain M481_3792 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein M481_3793 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 M481_3794 PF03668 P-loop ATPase protein family M481_3795 PF00381 PTS HPr component phosphorylation site M481_3796 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain M481_3796 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain M481_3797 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain M481_3797 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain M481_3798 PF01042 Endoribonuclease L-PSP M481_380 PF01810 LysE type translocator M481_3800 PF00356 Bacterial regulatory proteins, lacI family M481_3801 PF02378 Phosphotransferase system, EIIC M481_3801 PF00367 phosphotransferase system, EIIB M481_3802 PF11941 Domain of unknown function (DUF3459) M481_3802 PF00128 Alpha amylase, catalytic domain M481_3803 PF14760 Rnk N-terminus M481_3803 PF01272 Transcription elongation factor, GreA/GreB, C-term M481_3804 PF07361 Cytochrome b562 M481_3806 PF01523 Putative modulator of DNA gyrase M481_3807 PF04751 Protein of unknown function (DUF615) M481_3808 PF01337 Barstar (barnase inhibitor) M481_381 PF09382 RQC domain M481_381 PF16124 RecQ zinc-binding M481_381 PF00271 Helicase conserved C-terminal domain M481_381 PF00270 DEAD/DEAH box helicase M481_381 PF00570 HRDC domain M481_3810 PF00171 Aldehyde dehydrogenase family M481_3811 PF00171 Aldehyde dehydrogenase family M481_3812 PF04632 Fusaric acid resistance protein family M481_3813 PF13533 Biotin-lipoyl like M481_3814 PF07869 Protein of unknown function (DUF1656) M481_3815 PF03466 LysR substrate binding domain M481_3815 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M481_3818 PF18413 Neuraminidase-like domain M481_3818 PF18276 Tc toxin complex TcA C-terminal TcB-binding domain M481_3819 PF12255 Insecticide toxin TcdB middle/C-terminal region M481_3819 PF03534 Salmonella virulence plasmid 65kDa B protein M481_3819 PF12256 Insecticide toxin TcdB middle/N-terminal region M481_382 PF02253 Phospholipase A1 M481_3823 PF05785 Rho-activating domain of cytotoxic necrotizing factor M481_3823 PF18807 Tripartite Tc toxins repeat M481_3824 PF18807 Tripartite Tc toxins repeat M481_3824 PF14431 YwqJ-like deaminase M481_3825 PF01523 Putative modulator of DNA gyrase M481_3826 PF00795 Carbon-nitrogen hydrolase M481_3827 PF13116 Protein of unknown function M481_3827 PF13502 AsmA-like C-terminal region M481_3828 PF00575 S1 RNA binding domain M481_3828 PF10150 Ribonuclease E/G family M481_3829 PF02545 Maf-like protein M481_383 PF03061 Thioesterase superfamily M481_3830 PF04093 rod shape-determining protein MreD M481_3831 PF04085 rod shape-determining protein MreC M481_3833 PF00563 EAL domain M481_3833 PF17157 Gammaproteobacterial periplasmic sensor domain M481_3833 PF00990 Diguanylate cyclase, GGDEF domain M481_3834 PF00107 Zinc-binding dehydrogenase M481_3834 PF08240 Alcohol dehydrogenase GroES-like domain M481_3835 PF00174 Oxidoreductase molybdopterin binding domain M481_3836 PF01794 Ferric reductase like transmembrane component M481_3837 PF01220 Dehydroquinase class II M481_3838 PF00364 Biotin-requiring enzyme M481_3839 PF00289 Biotin carboxylase, N-terminal domain M481_3839 PF02785 Biotin carboxylase C-terminal domain M481_3839 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain M481_384 PF00892 EamA-like transporter family M481_3841 PF06196 Protein of unknown function (DUF997) M481_3842 PF00474 Sodium:solute symporter family M481_3844 PF01207 Dihydrouridine synthase (Dus) M481_3845 PF02954 Bacterial regulatory protein, Fis family M481_3848 PF07690 Major Facilitator Superfamily M481_3849 PF02627 Carboxymuconolactone decarboxylase family M481_385 PF01544 CorA-like Mg2+ transporter protein M481_3850 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase M481_3850 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase M481_3851 PF00753 Metallo-beta-lactamase superfamily M481_3852 PF05433 Glycine zipper 2TM domain M481_3853 PF00313 'Cold-shock' DNA-binding domain M481_3854 PF00313 'Cold-shock' DNA-binding domain M481_3855 PF01797 Transposase IS200 like M481_3858 PF02798 Glutathione S-transferase, N-terminal domain M481_3859 PF00571 CBS domain M481_3859 PF01380 SIS domain M481_386 PF09370 Phosphoenolpyruvate hydrolase-like M481_3860 PF02782 FGGY family of carbohydrate kinases, C-terminal domain M481_3860 PF00370 FGGY family of carbohydrate kinases, N-terminal domain M481_3862 PF02653 Branched-chain amino acid transport system / permease component M481_3863 PF00005 ABC transporter M481_3865 PF03279 Bacterial lipid A biosynthesis acyltransferase M481_3867 PF00999 Sodium/hydrogen exchanger family M481_3868 PF00860 Permease family M481_3869 PF04221 RelB antitoxin M481_3870 PF00005 ABC transporter M481_3871 PF00528 Binding-protein-dependent transport system inner membrane component M481_3872 PF00296 Luciferase-like monooxygenase M481_3873 PF09084 NMT1/THI5 like M481_3874 PF03358 NADPH-dependent FMN reductase M481_3876 PF00294 pfkB family carbohydrate kinase M481_3877 PF05025 RbsD / FucU transport protein family M481_3878 PF12833 Helix-turn-helix domain M481_3878 PF02311 AraC-like ligand binding domain M481_3879 PF02894 Oxidoreductase family, C-terminal alpha/beta domain M481_3879 PF01408 Oxidoreductase family, NAD-binding Rossmann fold M481_3882 PF03527 RHS protein M481_3882 PF05593 RHS Repeat M481_3884 PF04717 Type VI secretion system, phage-baseplate injector M481_3890 PF05593 RHS Repeat M481_3890 PF14220 Domain of unknown function (DUF4329) M481_3890 PF03527 RHS protein M481_3893 PF04717 Type VI secretion system, phage-baseplate injector M481_390 PF00580 UvrD/REP helicase N-terminal domain M481_390 PF13361 UvrD-like helicase C-terminal domain M481_3900 PF00004 ATPase family associated with various cellular activities (AAA) M481_3900 PF07724 AAA domain (Cdc48 subfamily) M481_3900 PF17871 AAA lid domain M481_3900 PF10431 C-terminal, D2-small domain, of ClpB protein M481_3909 PF13276 HTH-like domain M481_3909 PF00665 Integrase core domain M481_3909 PF13333 Integrase core domain M481_391 PF13419 Haloacid dehalogenase-like hydrolase M481_3913 PF05638 Type VI secretion system effector, Hcp M481_3915 PF07148 Maltose operon periplasmic protein precursor (MalM) M481_3916 PF02264 LamB porin M481_3917 PF00005 ABC transporter M481_3917 PF17912 MalK OB fold domain M481_3919 PF01547 Bacterial extracellular solute-binding protein M481_392 PF02899 Phage integrase, N-terminal SAM-like domain M481_392 PF00589 Phage integrase family M481_3920 PF14785 Maltose transport system permease protein MalF P2 domain M481_3920 PF00528 Binding-protein-dependent transport system inner membrane component M481_3921 PF00528 Binding-protein-dependent transport system inner membrane component M481_3922 PF06146 Phosphate-starvation-inducible E M481_3923 PF00342 Phosphoglucose isomerase M481_3924 PF01842 ACT domain M481_3924 PF00696 Amino acid kinase family M481_3925 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB M481_3925 PF17287 POTRA domain M481_3925 PF08479 POTRA domain, ShlB-type M481_3926 PF05860 haemagglutination activity domain M481_3926 PF13332 Hemagglutinin repeat M481_3927 PF13332 Hemagglutinin repeat M481_3927 PF05860 haemagglutination activity domain M481_3928 PF02607 B12 binding domain M481_3928 PF02965 Vitamin B12 dependent methionine synthase, activation domain M481_3928 PF00809 Pterin binding enzyme M481_3928 PF02574 Homocysteine S-methyltransferase M481_3928 PF02310 B12 binding domain M481_3929 PF09339 IclR helix-turn-helix domain M481_3929 PF01614 Bacterial transcriptional regulator M481_393 PF04340 Protein of unknown function, DUF484 M481_3930 PF06315 Isocitrate dehydrogenase kinase/phosphatase (AceK) M481_3931 PF00463 Isocitrate lyase family M481_3932 PF01274 Malate synthase M481_3933 PF04204 Homoserine O-succinyltransferase M481_394 PF01678 Diaminopimelate epimerase M481_3943 PF07724 AAA domain (Cdc48 subfamily) M481_3943 PF17871 AAA lid domain M481_3943 PF02861 Clp amino terminal domain, pathogenicity island component M481_3943 PF00004 ATPase family associated with various cellular activities (AAA) M481_3943 PF10431 C-terminal, D2-small domain, of ClpB protein M481_3945 PF01479 S4 domain M481_3945 PF00849 RNA pseudouridylate synthase M481_3946 PF13525 Outer membrane lipoprotein M481_3947 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein M481_3949 PF00800 Prephenate dehydratase M481_3949 PF01817 Chorismate mutase type II M481_395 PF13627 Prokaryotic lipoprotein-attachment site M481_3950 PF01817 Chorismate mutase type II M481_3950 PF02153 Prephenate dehydrogenase M481_3951 PF00793 DAHP synthetase I family M481_3952 PF01695 IstB-like ATP binding protein M481_3953 PF02796 Helix-turn-helix domain of resolvase M481_3953 PF00665 Integrase core domain M481_3955 PF03884 DNA gyrase inhibitor YacG M481_3956 PF07072 Cell division protein M481_3957 PF01121 Dephospho-CoA kinase M481_3958 PF00478 IMP dehydrogenase / GMP reductase domain M481_3959 PF00482 Type II secretion system (T2SS), protein F M481_396 PF01491 Frataxin-like domain M481_3960 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain M481_3960 PF00437 Type II/IV secretion system protein M481_3961 PF07963 Prokaryotic N-terminal methylation motif M481_3962 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain M481_3962 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain M481_3963 PF01510 N-acetylmuramoyl-L-alanine amidase M481_3964 PF17113 Regulatory signalling modulator protein AmpE M481_3965 PF00324 Amino acid permease M481_3966 PF00392 Bacterial regulatory proteins, gntR family M481_3966 PF07729 FCD domain M481_3967 PF00456 Transketolase, thiamine diphosphate binding domain M481_3967 PF17831 Pyruvate dehydrogenase E1 component middle domain M481_3968 PF00364 Biotin-requiring enzyme M481_3968 PF02817 e3 binding domain M481_3968 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) M481_3969 PF07992 Pyridine nucleotide-disulphide oxidoreductase M481_3969 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain M481_397 PF12633 Adenylate cyclase NT domain M481_397 PF01295 Adenylate cyclase, class-I M481_3970 PF01797 Transposase IS200 like M481_3971 PF06434 Aconitate hydratase 2 N-terminus M481_3971 PF11791 Aconitate B N-terminal domain M481_3971 PF00330 Aconitase family (aconitate hydratase) M481_3972 PF06062 Uncharacterised protein family (UPF0231) M481_3973 PF00892 EamA-like transporter family M481_3974 PF02675 S-adenosylmethionine decarboxylase M481_3975 PF17284 Spermidine synthase tetramerisation domain M481_3976 PF09691 Type II secretion system pilotin lipoprotein (PulS_OutS) M481_3977 PF00394 Multicopper oxidase M481_3977 PF07731 Multicopper oxidase M481_3977 PF10518 TAT (twin-arginine translocation) pathway signal sequence M481_3977 PF07732 Multicopper oxidase M481_3978 PF00156 Phosphoribosyl transferase domain M481_3979 PF00484 Carbonic anhydrase M481_398 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain M481_398 PF03900 Porphobilinogen deaminase, C-terminal domain M481_3980 PF00005 ABC transporter M481_3981 PF01061 ABC-2 type transporter M481_3983 PF01522 Polysaccharide deacetylase M481_3984 PF02261 Aspartate decarboxylase M481_3985 PF02569 Pantoate-beta-alanine ligase M481_3986 PF02548 Ketopantoate hydroxymethyltransferase M481_3987 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) M481_3988 PF12626 Polymerase A arginine-rich C-terminus M481_3988 PF12627 Probable RNA and SrmB- binding site of polymerase A M481_3988 PF01743 Poly A polymerase head domain M481_3989 PF00749 tRNA synthetases class I (E and Q), catalytic domain M481_399 PF02602 Uroporphyrinogen-III synthase HemD M481_3990 PF01258 Prokaryotic dksA/traR C4-type zinc finger M481_3991 PF17746 SfsA N-terminal OB domain M481_3991 PF03749 Sugar fermentation stimulation protein RE domain M481_3992 PF02834 LigT like Phosphoesterase M481_3993 PF00270 DEAD/DEAH box helicase M481_3993 PF04408 Helicase associated domain (HA2) M481_3993 PF00271 Helicase conserved C-terminal domain M481_3993 PF08482 ATP-dependent helicase C-terminal M481_3994 PF00912 Transglycosylase M481_3994 PF00905 Penicillin binding protein transpeptidase domain M481_3994 PF14814 Bifunctional transglycosylase second domain M481_3994 PF14812 Transmembrane domain of transglycosylase PBP1 at N-terminal M481_3995 PF00005 ABC transporter M481_3996 PF00005 ABC transporter M481_3997 PF01497 Periplasmic binding protein M481_3998 PF01032 FecCD transport family M481_3999 PF00202 Aminotransferase class-III M481_4 PF08245 Mur ligase middle domain M481_4 PF01225 Mur ligase family, catalytic domain M481_4 PF02875 Mur ligase family, glutamate ligase domain M481_40 PF00691 OmpA family M481_40 PF05736 OprF membrane domain M481_400 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase M481_4000 PF00654 Voltage gated chloride channel M481_4001 PF01521 Iron-sulphur cluster biosynthesis M481_4002 PF03458 UPF0126 domain M481_4003 PF01497 Periplasmic binding protein M481_4004 PF01048 Phosphorylase superfamily M481_4005 PF13286 Phosphohydrolase-associated domain M481_4005 PF01966 HD domain M481_4006 PF00595 PDZ domain M481_4007 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) M481_4007 PF00072 Response regulator receiver domain M481_4007 PF00672 HAMP domain M481_4007 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M481_4007 PF00512 His Kinase A (phospho-acceptor) domain M481_4007 PF01627 Hpt domain M481_4008 PF04607 Region found in RelA / SpoT proteins M481_4008 PF13291 ACT domain M481_4008 PF02824 TGS domain M481_4009 PF03819 MazG nucleotide pyrophosphohydrolase domain M481_401 PF07719 Tetratricopeptide repeat M481_401 PF07219 HemY protein N-terminus M481_4010 PF06418 CTP synthase N-terminus M481_4010 PF00117 Glutamine amidotransferase class-I M481_4011 PF03952 Enolase, N-terminal domain M481_4011 PF00113 Enolase, C-terminal TIM barrel domain M481_4012 PF00080 Copper/zinc superoxide dismutase (SODC) M481_4013 PF04055 Radical SAM superfamily M481_4014 PF01242 6-pyruvoyl tetrahydropterin synthase M481_4015 PF00175 Oxidoreductase NAD-binding domain M481_4015 PF00258 Flavodoxin M481_4015 PF00667 FAD binding domain M481_4016 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain M481_4016 PF01077 Nitrite and sulphite reductase 4Fe-4S domain M481_4017 PF01507 Phosphoadenosine phosphosulfate reductase family M481_4018 PF01507 Phosphoadenosine phosphosulfate reductase family M481_4022 PF14824 Sirohaem biosynthesis protein central M481_4022 PF10414 Sirohaem synthase dimerisation region M481_4022 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases M481_4023 PF01507 Phosphoadenosine phosphosulfate reductase family M481_4024 PF00009 Elongation factor Tu GTP binding domain M481_4026 PF12084 Protein of unknown function (DUF3561) M481_4027 PF04977 Septum formation initiator M481_4028 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase M481_4029 PF02542 YgbB family M481_4030 PF01142 tRNA pseudouridine synthase D (TruD) M481_4031 PF01975 Survival protein SurE M481_4033 PF01476 LysM domain M481_4033 PF01551 Peptidase family M23 M481_4034 PF00140 Sigma-70 factor, region 1.2 M481_4034 PF04545 Sigma-70, region 4 M481_4034 PF04539 Sigma-70 region 3 M481_4034 PF04542 Sigma-70 region 2 M481_4035 PF05188 MutS domain II M481_4035 PF00488 MutS domain V M481_4035 PF05190 MutS family domain IV M481_4035 PF01624 MutS domain I M481_4035 PF05192 MutS domain III M481_4036 PF02502 Ribose/Galactose Isomerase M481_4037 PF00107 Zinc-binding dehydrogenase M481_4037 PF08240 Alcohol dehydrogenase GroES-like domain M481_4039 PF02733 Dak1 domain M481_4040 PF02734 DAK2 domain M481_4041 PF13936 Helix-turn-helix domain M481_4041 PF04198 Putative sugar-binding domain M481_4042 PF02040 Arsenical pump membrane protein M481_4043 PF01022 Bacterial regulatory protein, arsR family M481_4046 PF00497 Bacterial extracellular solute-binding proteins, family 3 M481_4047 PF14376 Haem-binding domain M481_4047 PF03150 Di-haem cytochrome c peroxidase M481_4047 PF00034 Cytochrome c M481_4049 PF07715 TonB-dependent Receptor Plug Domain M481_4049 PF00593 TonB dependent receptor M481_4051 PF00557 Metallopeptidase family M24 M481_4053 PF05681 Fumarate hydratase (Fumerase) M481_4053 PF05683 Fumarase C-terminus M481_4054 PF00370 FGGY family of carbohydrate kinases, N-terminal domain M481_4054 PF02782 FGGY family of carbohydrate kinases, C-terminal domain M481_4055 PF01261 Xylose isomerase-like TIM barrel M481_4056 PF02653 Branched-chain amino acid transport system / permease component M481_4057 PF02653 Branched-chain amino acid transport system / permease component M481_4058 PF00005 ABC transporter M481_4060 PF08220 DeoR-like helix-turn-helix domain M481_4060 PF00455 DeoR C terminal sensor domain M481_4061 PF00596 Class II Aldolase and Adducin N-terminal domain M481_4062 PF01568 Molydopterin dinucleotide binding domain M481_4062 PF00384 Molybdopterin oxidoreductase M481_4062 PF04879 Molybdopterin oxidoreductase Fe4S4 domain M481_4063 PF12800 4Fe-4S binding domain M481_4063 PF13247 4Fe-4S dicluster domain M481_4064 PF04976 DMSO reductase anchor subunit (DmsC) M481_4065 PF02613 Nitrate reductase delta subunit M481_4066 PF01292 Prokaryotic cytochrome b561 M481_4067 PF07361 Cytochrome b562 M481_4068 PF00141 Peroxidase M481_4071 PF00005 ABC transporter M481_4072 PF02653 Branched-chain amino acid transport system / permease component M481_4073 PF00456 Transketolase, thiamine diphosphate binding domain M481_4074 PF02780 Transketolase, C-terminal domain M481_4074 PF02779 Transketolase, pyrimidine binding domain M481_4075 PF00370 FGGY family of carbohydrate kinases, N-terminal domain M481_4075 PF02782 FGGY family of carbohydrate kinases, C-terminal domain M481_4078 PF07690 Major Facilitator Superfamily M481_4079 PF02464 Competence-damaged protein M481_408 PF00324 Amino acid permease M481_4080 PF00154 recA bacterial DNA recombination protein M481_4081 PF02631 RecX family M481_4082 PF02272 DHHA1 domain M481_4082 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain M481_4082 PF01411 tRNA synthetases class II (A) M481_4083 PF02599 Global regulator protein family M481_4087 PF13419 Haloacid dehalogenase-like hydrolase M481_4088 PF09335 SNARE associated Golgi protein M481_4089 PF04262 Glutamate-cysteine ligase M481_409 PF03808 Glycosyl transferase WecB/TagA/CpsF family M481_4090 PF02664 S-Ribosylhomocysteinase (LuxS) M481_4091 PF01595 Cyclin M transmembrane N-terminal domain M481_4091 PF00571 CBS domain M481_4091 PF03471 Transporter associated domain M481_4092 PF01578 Cytochrome C assembly protein M481_4093 PF02881 SRP54-type protein, helical bundle domain M481_4093 PF02978 Signal peptide binding domain M481_4093 PF00448 SRP54-type protein, GTPase domain M481_4094 PF00886 Ribosomal protein S16 M481_4095 PF01782 RimM N-terminal domain M481_4095 PF05239 PRC-barrel domain M481_4096 PF01746 tRNA (Guanine-1)-methyltransferase M481_4097 PF01245 Ribosomal protein L19 M481_4098 PF04338 Protein of unknown function, DUF481 M481_4099 PF03605 Anaerobic c4-dicarboxylate membrane transporter M481_410 PF06899 WzyE protein, O-antigen assembly polymerase M481_4100 PF03605 Anaerobic c4-dicarboxylate membrane transporter M481_4101 PF00072 Response regulator receiver domain M481_4101 PF04397 LytTr DNA-binding domain M481_4102 PF00793 DAHP synthetase I family M481_4103 PF02796 Helix-turn-helix domain of resolvase M481_4103 PF00665 Integrase core domain M481_4104 PF01695 IstB-like ATP binding protein M481_4105 PF00293 NUDIX domain M481_4106 PF02810 SEC-C motif M481_4106 PF07516 SecA Wing and Scaffold domain M481_4106 PF07517 SecA DEAD-like domain M481_4106 PF01043 SecA preprotein cross-linking domain M481_4107 PF06558 Secretion monitor precursor protein (SecM) M481_4109 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase M481_411 PF07429 4-alpha-L-fucosyltransferase glycosyl transferase group 56 M481_4110 PF00091 Tubulin/FtsZ family, GTPase domain M481_4110 PF12327 FtsZ family, C-terminal domain M481_4111 PF06986 Type-1V conjugative transfer system mating pair stabilisation M481_4113 PF13728 F plasmid transfer operon protein M481_4114 PF09679 Type-F conjugative transfer system pilin chaperone (TraQ) M481_4115 PF13728 F plasmid transfer operon protein M481_4116 PF06122 Conjugative relaxosome accessory transposon protein M481_4117 PF07916 TraG-like protein, N-terminal region M481_4118 PF00872 Transposase, Mutator family M481_412 PF01943 Polysaccharide biosynthesis protein M481_4127 PF06445 GyrI-like small molecule binding domain M481_4127 PF12833 Helix-turn-helix domain M481_4128 PF02753 Pili assembly chaperone PapD, C-terminal domain M481_4128 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain M481_4129 PF00577 Outer membrane usher protein M481_4129 PF13953 PapC C-terminal domain M481_4129 PF13954 PapC N-terminal domain M481_413 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family M481_4130 PF09255 Caf1 Capsule antigen M481_4134 PF11775 Cobalamin biosynthesis protein CobT VWA domain M481_4134 PF06213 Cobalamin biosynthesis protein CobT M481_4136 PF17657 Bacterial DNA polymerase III alpha subunit finger domain M481_4136 PF02811 PHP domain M481_4136 PF14579 Helix-hairpin-helix motif M481_4136 PF07733 Bacterial DNA polymerase III alpha NTPase domain M481_4142 PF01367 5'-3' exonuclease, C-terminal SAM fold M481_4142 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain M481_4144 PF00154 recA bacterial DNA recombination protein M481_415 PF00483 Nucleotidyl transferase M481_4152 PF01051 Initiator Replication protein M481_416 PF16363 GDP-mannose 4,6 dehydratase M481_4160 PF00317 Ribonucleotide reductase, all-alpha domain M481_4160 PF03477 ATP cone domain M481_4160 PF02867 Ribonucleotide reductase, barrel domain M481_4161 PF00268 Ribonucleotide reductase, small chain M481_4163 PF01797 Transposase IS200 like M481_417 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain M481_417 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain M481_417 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain M481_4173 PF00271 Helicase conserved C-terminal domain M481_4173 PF00270 DEAD/DEAH box helicase M481_4173 PF17191 RecG wedge domain M481_4174 PF02195 ParB-like nuclease domain M481_4174 PF17762 HTH domain found in ParB protein M481_4175 PF02195 ParB-like nuclease domain M481_4175 PF17762 HTH domain found in ParB protein M481_4176 PF00664 ABC transporter transmembrane region M481_4176 PF00005 ABC transporter M481_4176 PF03412 Peptidase C39 family M481_418 PF02350 UDP-N-acetylglucosamine 2-epimerase M481_419 PF02706 Chain length determinant protein M481_420 PF00953 Glycosyl transferase family 4 M481_4200 PF03335 Phage tail fibre repeat M481_4200 PF07484 Phage Tail Collar Domain M481_4200 PF08400 Prophage tail fibre N-terminal M481_4200 PF03335 Phage tail fibre repeat M481_4200 PF07484 Phage Tail Collar Domain M481_4200 PF08400 Prophage tail fibre N-terminal M481_4201 PF02413 Caudovirales tail fibre assembly protein, lambda gpK M481_4202 PF01695 IstB-like ATP binding protein M481_4203 PF00665 Integrase core domain M481_4203 PF02796 Helix-turn-helix domain of resolvase M481_4204 PF02195 ParB-like nuclease domain M481_4205 PF06006 Bacterial protein of unknown function (DUF905) M481_4208 PF07128 Protein of unknown function (DUF1380) M481_421 PF07497 Rho termination factor, RNA-binding domain M481_421 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain M481_421 PF07498 Rho termination factor, N-terminal domain M481_4210 PF01555 DNA methylase M481_4213 PF02195 ParB-like nuclease domain M481_4213 PF08775 ParB family M481_4214 PF18607 ParA helix turn helix domain M481_4214 PF13614 AAA domain M481_4217 PF02796 Helix-turn-helix domain of resolvase M481_4217 PF00239 Resolvase, N terminal domain M481_4218 PF04754 Putative transposase, YhgA-like M481_422 PF00085 Thioredoxin M481_4220 PF13091 PLD-like domain M481_4223 PF01548 Transposase M481_4223 PF02371 Transposase IS116/IS110/IS902 family M481_4225 PF02387 IncFII RepA protein family M481_4227 PF13462 Thioredoxin M481_4227 PF06965 Na+/H+ antiporter 1 M481_4229 PF05857 TraX protein M481_423 PF00270 DEAD/DEAH box helicase M481_423 PF00271 Helicase conserved C-terminal domain M481_4230 PF18272 single-stranded DNA binding TraI N-terminal subdomain M481_4230 PF08751 TrwC relaxase M481_4230 PF07057 DNA helicase TraI M481_4230 PF18340 DNA relaxase TraI 2B/2B-like domain M481_4231 PF12615 F sex factor protein N terminal M481_4231 PF10412 Type IV secretion-system coupling protein DNA-binding domain M481_4232 PF00872 Transposase, Mutator family M481_4233 PF05513 TraA M481_4234 PF07178 TraL protein M481_4235 PF05309 TraE protein M481_4236 PF06586 TraK protein M481_4237 PF03743 Bacterial conjugation TrbI-like protein M481_4238 PF09676 Type IV conjugative transfer system lipoprotein (TraV) M481_424 PF02541 Ppx/GppA phosphatase family M481_4243 PF11130 F pilus assembly Type-IV secretion system for plasmid transfer M481_4244 PF09677 Type-F conjugative transfer system protein (TrbI_Ftype) M481_4245 PF12477 Sex factor F TraW protein N terminal M481_4246 PF06834 TraU protein M481_4247 PF09673 Type-F conjugative transfer system pilin assembly protein M481_4248 PF05932 Tir chaperone protein (CesT) family M481_4249 PF13683 Integrase core domain M481_4249 PF13276 HTH-like domain M481_425 PF00580 UvrD/REP helicase N-terminal domain M481_425 PF13361 UvrD-like helicase C-terminal domain M481_4250 PF00665 Integrase core domain M481_4251 PF01695 IstB-like ATP binding protein M481_4253 PF13276 HTH-like domain M481_4253 PF13683 Integrase core domain M481_4254 PF01527 Transposase M481_4257 PF02796 Helix-turn-helix domain of resolvase M481_4257 PF00239 Resolvase, N terminal domain M481_4259 PF13700 Domain of unknown function (DUF4158) M481_4259 PF01526 Tn3 transposase DDE domain M481_4260 PF05662 Coiled stalk of trimeric autotransporter adhesin M481_4260 PF03895 YadA-like membrane anchor domain M481_4260 PF05658 Head domain of trimeric autotransporter adhesin M481_4262 PF03895 YadA-like membrane anchor domain M481_4262 PF05658 Head domain of trimeric autotransporter adhesin M481_4262 PF05662 Coiled stalk of trimeric autotransporter adhesin M481_4268 PF10723 Replication regulatory protein RepB M481_4269 PF02387 IncFII RepA protein family M481_4274 PF00069 Protein kinase domain M481_4274 PF09632 Rac1-binding domain M481_4276 PF13683 Integrase core domain M481_4276 PF13276 HTH-like domain M481_4277 PF00102 Protein-tyrosine phosphatase M481_4277 PF09013 YopH, N-terminal M481_4278 PF13683 Integrase core domain M481_4278 PF13276 HTH-like domain M481_4279 PF01695 IstB-like ATP binding protein M481_4280 PF02796 Helix-turn-helix domain of resolvase M481_4280 PF00665 Integrase core domain M481_4282 PF01527 Transposase M481_4283 PF09013 YopH, N-terminal M481_4284 PF02108 Flagellar assembly protein FliH M481_4285 PF06578 YOP proteins translocation protein K (YscK) M481_4286 PF01514 Secretory protein of YscJ/FliF family M481_4287 PF17001 Type III secretion basal body protein I, YscI, HrpB, PscI M481_4288 PF09025 YopR, type III needle-polymerisation regulator M481_4289 PF09477 Bacterial type II secretion system chaperone protein (type_III_yscG) M481_429 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain M481_429 PF02753 Pili assembly chaperone PapD, C-terminal domain M481_4290 PF09392 Type III secretion needle MxiH, YscF, SsaG, EprI, PscF, EscF M481_4291 PF08988 Type III secretion system, cytoplasmic E component of needle M481_4292 PF16697 Inner membrane component of T3SS, cytoplasmic domain M481_4292 PF16693 Inner membrane component of T3SS, periplasmic domain M481_4294 PF05932 Tir chaperone protein (CesT) family M481_4295 PF12833 Helix-turn-helix domain M481_4295 PF02311 AraC-like ligand binding domain M481_4297 PF01312 FlhB HrpN YscU SpaS Family M481_4298 PF01311 Bacterial export proteins, family 1 M481_4299 PF01313 Bacterial export proteins, family 3 M481_430 PF13954 PapC N-terminal domain M481_430 PF00577 Outer membrane usher protein M481_430 PF13953 PapC C-terminal domain M481_4300 PF00813 FliP family M481_4301 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term M481_4302 PF02120 Flagellar hook-length control protein FliK M481_4303 PF07321 Type III secretion protein YscO M481_4304 PF02874 ATP synthase alpha/beta family, beta-barrel domain M481_4304 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain M481_4304 PF18269 T3SS EscN ATPase C-terminal domain M481_4305 PF07201 HrpJ-like domain M481_4306 PF09059 TyeA M481_4308 PF09474 Type III secretion system YscX (type_III_YscX) M481_4310 PF00771 FHIPEP family M481_4311 PF09621 Type III secretion system regulator (LcrR) M481_4312 PF07216 LcrG protein M481_4313 PF04792 V antigen (LcrV) protein M481_4314 PF07720 Tetratricopeptide repeat M481_4315 PF04888 Secretion system effector C (SseC) like family M481_4316 PF05844 YopD protein M481_4317 PF00872 Transposase, Mutator family M481_4318 PF00872 Transposase, Mutator family M481_432 PF02753 Pili assembly chaperone PapD, C-terminal domain M481_432 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain M481_4320 PF12468 Type III secretion system leucine rich repeat protein M481_4324 PF05932 Tir chaperone protein (CesT) family M481_4325 PF03543 Yersinia/Haemophilus virulence surface antigen M481_4327 PF05818 Enterobacterial TraT complement resistance protein M481_4329 PF00665 Integrase core domain M481_4329 PF13276 HTH-like domain M481_4329 PF13333 Integrase core domain M481_433 PF01320 Colicin immunity protein / pyocin immunity protein M481_4331 PF13614 AAA domain M481_4332 PF18090 Centromere-binding protein HTH domain M481_4332 PF02195 ParB-like nuclease domain M481_4334 PF03693 Bacterial antitoxin of ParD toxin-antitoxin type II system and RHH M481_4336 PF09020 YopE, N terminal M481_4336 PF03545 Yersinia virulence determinant (YopE) M481_438 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain M481_438 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain M481_439 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M481_439 PF03466 LysR substrate binding domain M481_445 PF00291 Pyridoxal-phosphate dependent enzyme M481_445 PF00585 C-terminal regulatory domain of Threonine dehydratase M481_446 PF00920 Dehydratase family M481_447 PF01063 Amino-transferase class IV M481_449 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain M481_449 PF00205 Thiamine pyrophosphate enzyme, central domain M481_449 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain M481_450 PF13335 Magnesium chelatase, subunit ChlI C-terminal M481_450 PF01078 Magnesium chelatase, subunit ChlI M481_451 PF04219 Protein of unknown function, DUF M481_452 PF02653 Branched-chain amino acid transport system / permease component M481_453 PF03466 LysR substrate binding domain M481_453 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M481_454 PF02653 Branched-chain amino acid transport system / permease component M481_455 PF00005 ABC transporter M481_456 PF13407 Periplasmic binding protein domain M481_464 PF02142 MGS-like domain M481_464 PF01808 AICARFT/IMPCHase bienzyme M481_465 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain M481_465 PF02844 Phosphoribosylglycinamide synthetase, N domain M481_465 PF02843 Phosphoribosylglycinamide synthetase, C domain M481_466 PF07356 Protein of unknown function (DUF1481) M481_467 PF00216 Bacterial DNA-binding protein M481_468 PF04222 Protein of unknown function (DUF416) M481_469 PF04493 Endonuclease V M481_47 PF04717 Type VI secretion system, phage-baseplate injector M481_470 PF01208 Uroporphyrinogen decarboxylase (URO-D) M481_472 PF09297 NADH pyrophosphatase zinc ribbon domain M481_472 PF00293 NUDIX domain M481_473 PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ M481_474 PF13667 ThiC-associated domain M481_474 PF01964 Radical SAM ThiC family M481_475 PF02581 Thiamine monophosphate synthase M481_476 PF00899 ThiF family M481_478 PF05690 Thiazole biosynthesis protein ThiG M481_479 PF05690 Thiazole biosynthesis protein ThiG M481_48 PF00004 ATPase family associated with various cellular activities (AAA) M481_48 PF17871 AAA lid domain M481_48 PF10431 C-terminal, D2-small domain, of ClpB protein M481_48 PF07724 AAA domain (Cdc48 subfamily) M481_480 PF04055 Radical SAM superfamily M481_480 PF06968 Biotin and Thiamin Synthesis associated domain M481_481 PF04055 Radical SAM superfamily M481_481 PF06968 Biotin and Thiamin Synthesis associated domain M481_482 PF04998 RNA polymerase Rpb1, domain 5 M481_482 PF05000 RNA polymerase Rpb1, domain 4 M481_482 PF04983 RNA polymerase Rpb1, domain 3 M481_482 PF00623 RNA polymerase Rpb1, domain 2 M481_482 PF04997 RNA polymerase Rpb1, domain 1 M481_483 PF00562 RNA polymerase Rpb2, domain 6 M481_483 PF04563 RNA polymerase beta subunit M481_483 PF04561 RNA polymerase Rpb2, domain 2 M481_483 PF04565 RNA polymerase Rpb2, domain 3 M481_483 PF10385 RNA polymerase beta subunit external 1 domain M481_483 PF04560 RNA polymerase Rpb2, domain 7 M481_485 PF16320 Ribosomal protein L7/L12 dimerisation domain M481_485 PF00542 Ribosomal protein L7/L12 C-terminal domain M481_486 PF00466 Ribosomal protein L10 M481_487 PF00687 Ribosomal protein L1p/L10e family M481_488 PF00298 Ribosomal protein L11, RNA binding domain M481_488 PF03946 Ribosomal protein L11, N-terminal domain M481_489 PF00467 KOW motif M481_489 PF02357 Transcription termination factor nusG M481_490 PF00584 SecE/Sec61-gamma subunits of protein translocation complex M481_491 PF00009 Elongation factor Tu GTP binding domain M481_491 PF03144 Elongation factor Tu domain 2 M481_491 PF03143 Elongation factor Tu C-terminal domain M481_496 PF01695 IstB-like ATP binding protein M481_497 PF01695 IstB-like ATP binding protein M481_498 PF02796 Helix-turn-helix domain of resolvase M481_498 PF00665 Integrase core domain M481_499 PF12146 Serine aminopeptidase, S33 M481_5 PF03033 Glycosyltransferase family 28 N-terminal domain M481_5 PF04101 Glycosyltransferase family 28 C-terminal domain M481_500 PF00324 Amino acid permease M481_501 PF00221 Aromatic amino acid lyase M481_502 PF17392 Urocanase C-terminal domain M481_502 PF01175 Urocanase Rossmann-like domain M481_502 PF17391 Urocanase N-terminal domain M481_503 PF00291 Pyridoxal-phosphate dependent enzyme M481_504 PF00156 Phosphoribosyl transferase domain M481_507 PF01497 Periplasmic binding protein M481_508 PF01032 FecCD transport family M481_509 PF01032 FecCD transport family M481_511 PF00005 ABC transporter M481_514 PF13737 Transposase DDE domain M481_515 PF13737 Transposase DDE domain M481_516 PF04606 Ogr/Delta-like zinc finger M481_518 PF13356 Arm DNA-binding domain M481_518 PF14659 Phage integrase, N-terminal SAM-like domain M481_518 PF00589 Phage integrase family M481_520 PF12833 Helix-turn-helix domain M481_521 PF02653 Branched-chain amino acid transport system / permease component M481_522 PF00005 ABC transporter M481_523 PF13407 Periplasmic binding protein domain M481_525 PF02782 FGGY family of carbohydrate kinases, C-terminal domain M481_525 PF00370 FGGY family of carbohydrate kinases, N-terminal domain M481_527 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain M481_527 PF02753 Pili assembly chaperone PapD, C-terminal domain M481_528 PF13953 PapC C-terminal domain M481_528 PF13954 PapC N-terminal domain M481_528 PF00577 Outer membrane usher protein M481_529 PF13953 PapC C-terminal domain M481_529 PF13954 PapC N-terminal domain M481_529 PF00577 Outer membrane usher protein M481_530 PF00419 Fimbrial protein M481_531 PF01757 Acyltransferase family M481_533 PF13276 HTH-like domain M481_533 PF13333 Integrase core domain M481_533 PF00665 Integrase core domain M481_534 PF02219 Methylenetetrahydrofolate reductase M481_535 PF03447 Homoserine dehydrogenase, NAD binding domain M481_535 PF00696 Amino acid kinase family M481_535 PF00742 Homoserine dehydrogenase M481_536 PF01053 Cys/Met metabolism PLP-dependent enzyme M481_537 PF01340 Met Apo-repressor, MetJ M481_538 PF05360 yiaA/B two helix domain M481_539 PF01197 Ribosomal protein L31 M481_540 PF00270 DEAD/DEAH box helicase M481_540 PF18074 Primosomal protein N C-terminal domain M481_540 PF17764 3′ DNA-binding domain (3′BD) M481_540 PF00271 Helicase conserved C-terminal domain M481_540 PF18319 PriA DNA helicase Cys-rich region (CRR) domain M481_542 PF00356 Bacterial regulatory proteins, lacI family M481_543 PF05036 Sporulation related domain M481_544 PF00227 Proteasome subunit M481_545 PF07724 AAA domain (Cdc48 subfamily) M481_545 PF10431 C-terminal, D2-small domain, of ClpB protein M481_545 PF00004 ATPase family associated with various cellular activities (AAA) M481_546 PF01040 UbiA prenyltransferase family M481_547 PF03737 Aldolase/RraA M481_550 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion M481_550 PF00529 HlyD membrane-fusion protein of T1SS M481_551 PF00005 ABC transporter M481_551 PF03412 Peptidase C39 family M481_551 PF00664 ABC transporter transmembrane region M481_553 PF06005 Cell division protein ZapB M481_554 PF00230 Major intrinsic protein M481_555 PF02782 FGGY family of carbohydrate kinases, C-terminal domain M481_555 PF00370 FGGY family of carbohydrate kinases, N-terminal domain M481_556 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded M481_557 PF00175 Oxidoreductase NAD-binding domain M481_557 PF00970 Oxidoreductase FAD-binding domain M481_558 PF05656 Protein of unknown function (DUF805) M481_559 PF07305 Protein of unknown function (DUF1454) M481_560 PF00121 Triosephosphate isomerase M481_561 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M481_561 PF03466 LysR substrate binding domain M481_562 PF02585 GlcNAc-PI de-N-acetylase M481_563 PF03737 Aldolase/RraA M481_564 PF00939 Sodium:sulfate symporter transmembrane region M481_565 PF00939 Sodium:sulfate symporter transmembrane region M481_569 PF00365 Phosphofructokinase M481_57 PF00849 RNA pseudouridylate synthase M481_570 PF16916 Dimerisation domain of Zinc Transporter M481_570 PF01545 Cation efflux family M481_571 PF04754 Putative transposase, YhgA-like M481_572 PF07813 LTXXQ motif family protein M481_573 PF00072 Response regulator receiver domain M481_573 PF00486 Transcriptional regulatory protein, C terminal M481_574 PF00672 HAMP domain M481_574 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M481_574 PF00512 His Kinase A (phospho-acceptor) domain M481_574 PF16527 Two-component sensor protein CpxA, periplasmic domain M481_575 PF12833 Helix-turn-helix domain M481_575 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain M481_575 PF02805 Metal binding domain of Ada M481_575 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain M481_576 PF00588 SpoU rRNA Methylase family M481_577 PF06426 Serine acetyltransferase, N-terminal M481_577 PF00132 Bacterial transferase hexapeptide (six repeats) M481_578 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus M481_578 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus M481_579 PF02556 Preprotein translocase subunit SecB M481_58 PF05099 Tellurite resistance protein TerB M481_58 PF00226 DnaJ domain M481_580 PF00462 Glutaredoxin M481_581 PF00581 Rhodanese-like domain M481_582 PF01676 Metalloenzyme superfamily M481_582 PF06415 BPG-independent PGAM N-terminus (iPGM_N) M481_583 PF01551 Peptidase family M23 M481_584 PF04748 Divergent polysaccharide deacetylase M481_585 PF04748 Divergent polysaccharide deacetylase M481_586 PF00107 Zinc-binding dehydrogenase M481_586 PF08240 Alcohol dehydrogenase GroES-like domain M481_587 PF00155 Aminotransferase class I and II M481_588 PF01370 NAD dependent epimerase/dehydratase family M481_589 PF01075 Glycosyltransferase family 9 (heptosyltransferase) M481_59 PF04453 LPS transport system D M481_59 PF03968 OstA-like protein M481_590 PF01075 Glycosyltransferase family 9 (heptosyltransferase) M481_591 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) M481_592 PF00535 Glycosyl transferase family 2 M481_593 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain M481_593 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain M481_593 PF06827 Zinc finger found in FPG and IleRS M481_594 PF01467 Cytidylyltransferase-like M481_595 PF00471 Ribosomal protein L33 M481_596 PF00830 Ribosomal L28 family M481_597 PF04002 RadC-like JAB domain M481_598 PF04127 DNA / pantothenate metabolism flavoprotein M481_598 PF02441 Flavoprotein M481_599 PF00692 dUTPase M481_6 PF01098 Cell cycle protein M481_60 PF00639 PPIC-type PPIASE domain M481_60 PF09312 SurA N-terminal domain M481_600 PF00440 Bacterial regulatory proteins, tetR family M481_601 PF00156 Phosphoribosyl transferase domain M481_602 PF03725 3' exoribonuclease family, domain 2 M481_602 PF01138 3' exoribonuclease family, domain 1 M481_603 PF03755 YicC-like family, N-terminal region M481_603 PF08340 Domain of unknown function (DUF1732) M481_604 PF03458 UPF0126 domain M481_605 PF03120 NAD-dependent DNA ligase OB-fold domain M481_605 PF01653 NAD-dependent DNA ligase adenylation domain M481_606 PF00625 Guanylate kinase M481_607 PF01192 RNA polymerase Rpb6 M481_608 PF02824 TGS domain M481_608 PF04607 Region found in RelA / SpoT proteins M481_608 PF13291 ACT domain M481_609 PF00588 SpoU rRNA Methylase family M481_609 PF12105 SpoU, rRNA methylase, C-terminal M481_61 PF04166 Pyridoxal phosphate biosynthetic protein PdxA M481_610 PF00271 Helicase conserved C-terminal domain M481_610 PF17191 RecG wedge domain M481_610 PF00270 DEAD/DEAH box helicase M481_611 PF03616 Sodium/glutamate symporter M481_612 PF00860 Permease family M481_613 PF05170 AsmA family M481_614 PF09500 Putative thioesterase (yiiD_Cterm) M481_614 PF00583 Acetyltransferase (GNAT) family M481_615 PF00665 Integrase core domain M481_615 PF02796 Helix-turn-helix domain of resolvase M481_616 PF01695 IstB-like ATP binding protein M481_617 PF02580 D-Tyr-tRNA(Tyr) deacylase M481_618 PF03631 Virulence factor BrkB M481_619 PF13419 Haloacid dehalogenase-like hydrolase M481_62 PF00398 Ribosomal RNA adenine dimethylase M481_621 PF00120 Glutamine synthetase, catalytic domain M481_621 PF03951 Glutamine synthetase, beta-Grasp domain M481_622 PF00512 His Kinase A (phospho-acceptor) domain M481_622 PF00989 PAS fold M481_622 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M481_623 PF02954 Bacterial regulatory protein, Fis family M481_623 PF00072 Response regulator receiver domain M481_623 PF00158 Sigma-54 interaction domain M481_624 PF06969 HemN C-terminal domain M481_624 PF04055 Radical SAM superfamily M481_625 PF04220 Der GTPase activator (YihI) M481_626 PF01926 50S ribosome-binding GTPase M481_627 PF01612 3'-5' exonuclease M481_627 PF00476 DNA polymerase family A M481_627 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain M481_627 PF01367 5'-3' exonuclease, C-terminal SAM fold M481_628 PF01323 DSBA-like thioredoxin domain M481_629 PF01636 Phosphotransferase enzyme family M481_63 PF04379 ApaG domain M481_630 PF06288 Protein of unknown function (DUF1040) M481_631 PF12804 MobA-like NTP transferase domain M481_632 PF03205 Molybdopterin guanine dinucleotide synthesis protein B M481_633 PF00872 Transposase, Mutator family M481_638 PF07729 FCD domain M481_638 PF00392 Bacterial regulatory proteins, gntR family M481_64 PF00149 Calcineurin-like phosphoesterase M481_640 PF07690 Major Facilitator Superfamily M481_641 PF00294 pfkB family carbohydrate kinase M481_642 PF00294 pfkB family carbohydrate kinase M481_643 PF05025 RbsD / FucU transport protein family M481_644 PF02705 K+ potassium transporter M481_645 PF07728 AAA domain (dynein-related subfamily) M481_645 PF17868 AAA lid domain M481_645 PF12592 Protein of unknown function (DUF3763) M481_646 PF05762 VWA domain containing CoxE-like protein M481_647 PF03590 Aspartate-ammonia ligase M481_648 PF01037 Lrp/AsnC ligand binding domain M481_649 PF00258 Flavodoxin M481_650 PF01134 Glucose inhibited division protein A M481_650 PF13932 GidA associated domain M481_651 PF02527 rRNA small subunit methyltransferase G M481_652 PF03899 ATP synthase I chain M481_653 PF00119 ATP synthase A chain M481_654 PF00137 ATP synthase subunit C M481_655 PF00430 ATP synthase B/B' CF(0) M481_656 PF00213 ATP synthase delta (OSCP) subunit M481_657 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain M481_657 PF00306 ATP synthase alpha/beta chain, C terminal domain M481_657 PF02874 ATP synthase alpha/beta family, beta-barrel domain M481_658 PF00231 ATP synthase M481_659 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain M481_659 PF02874 ATP synthase alpha/beta family, beta-barrel domain M481_66 PF00186 Dihydrofolate reductase M481_660 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain M481_660 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain M481_661 PF00132 Bacterial transferase hexapeptide (six repeats) M481_661 PF12804 MobA-like NTP transferase domain M481_662 PF01380 SIS domain M481_663 PF12849 PBP superfamily domain M481_664 PF00528 Binding-protein-dependent transport system inner membrane component M481_665 PF00528 Binding-protein-dependent transport system inner membrane component M481_666 PF00005 ABC transporter M481_667 PF01895 PhoU domain M481_669 PF00497 Bacterial extracellular solute-binding proteins, family 3 M481_67 PF12821 Threonine/Serine exporter, ThrE M481_670 PF00528 Binding-protein-dependent transport system inner membrane component M481_671 PF00528 Binding-protein-dependent transport system inner membrane component M481_672 PF13419 Haloacid dehalogenase-like hydrolase M481_673 PF00860 Permease family M481_676 PF12241 Trans-2-enoyl-CoA reductase catalytic region M481_676 PF07055 Enoyl reductase FAD binding domain M481_676 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase M481_677 PF01926 50S ribosome-binding GTPase M481_677 PF12631 MnmE helical domain M481_677 PF10396 GTP-binding protein TrmE N-terminus M481_678 PF02096 60Kd inner membrane protein M481_678 PF14849 YidC periplasmic domain M481_679 PF01809 Putative membrane protein insertion efficiency factor M481_68 PF06738 Putative threonine/serine exporter M481_680 PF00825 Ribonuclease P M481_681 PF00468 Ribosomal protein L34 M481_683 PF08299 Bacterial dnaA protein helix-turn-helix M481_683 PF11638 DnaA N-terminal domain M481_683 PF00308 Bacterial dnaA protein M481_684 PF00712 DNA polymerase III beta subunit, N-terminal domain M481_684 PF02767 DNA polymerase III beta subunit, central domain M481_684 PF02768 DNA polymerase III beta subunit, C-terminal domain M481_685 PF02463 RecF/RecN/SMC N terminal domain M481_686 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M481_686 PF01751 Toprim domain M481_686 PF18053 DNA gyrase B subunit insert domain M481_686 PF00986 DNA gyrase B subunit, carboxyl terminus M481_686 PF00204 DNA gyrase B M481_688 PF13333 Integrase core domain M481_688 PF00665 Integrase core domain M481_688 PF13276 HTH-like domain M481_69 PF01810 LysE type translocator M481_690 PF02423 Ornithine cyclodeaminase/mu-crystallin family M481_691 PF13291 ACT domain M481_691 PF00291 Pyridoxal-phosphate dependent enzyme M481_692 PF07676 WD40-like Beta Propeller Repeat M481_692 PF12566 Protein of unknown function (DUF3748) M481_693 PF07676 WD40-like Beta Propeller Repeat M481_693 PF12566 Protein of unknown function (DUF3748) M481_694 PF07119 Protein of unknown function (DUF1375) M481_695 PF00011 Hsp20/alpha crystallin family M481_696 PF00011 Hsp20/alpha crystallin family M481_697 PF02080 TrkA-C domain M481_697 PF06826 Predicted Permease Membrane Region M481_698 PF00155 Aminotransferase class I and II M481_7 PF08245 Mur ligase middle domain M481_7 PF02875 Mur ligase family, glutamate ligase domain M481_70 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain M481_70 PF02142 MGS-like domain M481_70 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain M481_700 PF00128 Alpha amylase, catalytic domain M481_701 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain M481_701 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain M481_703 PF00691 OmpA family M481_703 PF13488 Glycine zipper M481_705 PF03352 Methyladenine glycosylase M481_707 PF02091 Glycyl-tRNA synthetase alpha subunit M481_708 PF02092 Glycyl-tRNA synthetase beta subunit M481_708 PF05746 DALR anticodon binding domain M481_709 PF11254 Protein of unknown function (DUF3053) M481_71 PF00117 Glutamine amidotransferase class-I M481_71 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain M481_710 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit M481_710 PF02378 Phosphotransferase system, EIIC M481_710 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 M481_711 PF08125 Mannitol dehydrogenase C-terminal domain M481_711 PF01232 Mannitol dehydrogenase Rossmann domain M481_712 PF05068 Mannitol repressor M481_714 PF10928 Protein of unknown function (DUF2810) M481_718 PF02203 Tar ligand binding domain homologue M481_718 PF00672 HAMP domain M481_718 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain M481_719 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain M481_719 PF02777 Iron/manganese superoxide dismutases, C-terminal domain M481_72 PF05173 Dihydrodipicolinate reductase, C-terminus M481_72 PF01113 Dihydrodipicolinate reductase, N-terminus M481_720 PF02634 FdhD/NarQ family M481_721 PF01568 Molydopterin dinucleotide binding domain M481_721 PF00384 Molybdopterin oxidoreductase M481_721 PF04879 Molybdopterin oxidoreductase Fe4S4 domain M481_722 PF04879 Molybdopterin oxidoreductase Fe4S4 domain M481_722 PF00384 Molybdopterin oxidoreductase M481_722 PF01568 Molydopterin dinucleotide binding domain M481_723 PF09163 Formate dehydrogenase N, transmembrane M481_723 PF13247 4Fe-4S dicluster domain M481_724 PF01292 Prokaryotic cytochrome b561 M481_725 PF04216 Protein involved in formate dehydrogenase formation M481_726 PF03841 L-seryl-tRNA selenium transferase M481_726 PF12390 Selenocysteine synthase N terminal M481_727 PF09107 Elongation factor SelB, winged helix M481_727 PF09106 Elongation factor SelB, winged helix M481_727 PF03144 Elongation factor Tu domain 2 M481_727 PF00009 Elongation factor Tu GTP binding domain M481_728 PF13700 Domain of unknown function (DUF4158) M481_728 PF01526 Tn3 transposase DDE domain M481_729 PF00872 Transposase, Mutator family M481_73 PF02401 LytB protein M481_733 PF07690 Major Facilitator Superfamily M481_734 PF13276 HTH-like domain M481_734 PF00665 Integrase core domain M481_734 PF13333 Integrase core domain M481_736 PF08220 DeoR-like helix-turn-helix domain M481_736 PF00455 DeoR C terminal sensor domain M481_737 PF01694 Rhomboid family M481_737 PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease M481_738 PF00581 Rhodanese-like domain M481_739 PF00196 Bacterial regulatory proteins, luxR family M481_739 PF17874 MalT-like TPR region M481_74 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase M481_740 PF00343 Carbohydrate phosphorylase M481_741 PF02446 4-alpha-glucanotransferase M481_742 PF01106 NifU-like domain M481_742 PF01521 Iron-sulphur cluster biosynthesis M481_743 PF00156 Phosphoribosyl transferase domain M481_744 PF00561 alpha/beta hydrolase fold M481_745 PF07338 Protein of unknown function (DUF1471) M481_746 PF09012 FeoC like transcriptional regulator M481_747 PF07664 Ferrous iron transport protein B C terminus M481_747 PF17910 FeoB cytosolic helical domain M481_747 PF02421 Ferrous iron transport protein B M481_747 PF07670 Nucleoside recognition M481_748 PF04023 FeoA domain M481_749 PF00575 S1 RNA binding domain M481_749 PF09371 Tex-like protein N-terminal domain M481_749 PF16921 Tex protein YqgF-like domain M481_749 PF17674 HHH domain M481_75 PF01252 Signal peptidase (SPase) II M481_750 PF03449 Transcription elongation factor, N-terminal M481_750 PF01272 Transcription elongation factor, GreA/GreB, C-term M481_751 PF00486 Transcriptional regulatory protein, C terminal M481_751 PF00072 Response regulator receiver domain M481_752 PF00672 HAMP domain M481_752 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M481_752 PF00512 His Kinase A (phospho-acceptor) domain M481_753 PF01293 Phosphoenolpyruvate carboxykinase M481_754 PF01430 Hsp33 protein M481_755 PF01479 S4 domain M481_756 PF13419 Haloacid dehalogenase-like hydrolase M481_757 PF07095 Intracellular growth attenuator protein IgaA M481_759 PF00293 NUDIX domain M481_76 PF08264 Anticodon-binding domain of tRNA M481_76 PF06827 Zinc finger found in FPG and IleRS M481_76 PF00133 tRNA synthetases class I (I, L, M and V) M481_760 PF00912 Transglycosylase M481_760 PF17092 Penicillin-binding protein OB-like domain M481_760 PF00905 Penicillin binding protein transpeptidase domain M481_765 PF03958 Bacterial type II/III secretion system short domain M481_765 PF00263 Bacterial type II and III secretion system protein M481_766 PF01202 Shikimate kinase M481_767 PF01761 3-dehydroquinate synthase M481_768 PF05036 Sporulation related domain M481_769 PF02086 D12 class N6 adenine-specific DNA methyltransferase M481_77 PF01687 Riboflavin kinase M481_77 PF06574 FAD synthetase M481_770 PF00834 Ribulose-phosphate 3 epimerase family M481_771 PF13419 Haloacid dehalogenase-like hydrolase M481_772 PF00579 tRNA synthetases class I (W and Y) M481_773 PF10414 Sirohaem synthase dimerisation region M481_773 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases M481_773 PF14824 Sirohaem biosynthesis protein central M481_774 PF01226 Formate/nitrite transporter M481_775 PF13806 Rieske-like [2Fe-2S] domain M481_776 PF07992 Pyridine nucleotide-disulphide oxidoreductase M481_776 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain M481_776 PF04324 BFD-like [2Fe-2S] binding domain M481_776 PF01077 Nitrite and sulphite reductase 4Fe-4S domain M481_776 PF18267 Rubredoxin NAD+ reductase C-terminal domain M481_777 PF07969 Amidohydrolase family M481_778 PF07690 Major Facilitator Superfamily M481_78 PF01649 Ribosomal protein S20 M481_780 PF00356 Bacterial regulatory proteins, lacI family M481_781 PF02056 Family 4 glycosyl hydrolase M481_781 PF11975 Family 4 glycosyl hydrolase C-terminal domain M481_782 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD M481_783 PF05872 Bacterial protein of unknown function (DUF853) M481_784 PF00117 Glutamine amidotransferase class-I M481_785 PF00202 Aminotransferase class-III M481_786 PF12805 FUSC-like inner membrane protein yccS M481_787 PF13545 Crp-like helix-turn-helix domain M481_787 PF00027 Cyclic nucleotide-binding domain M481_788 PF02566 OsmC-like protein M481_79 PF03466 LysR substrate binding domain M481_79 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M481_790 PF00485 Phosphoribulokinase / Uridine kinase family M481_791 PF06794 Uncharacterised protein family (UPF0270) M481_792 PF00561 alpha/beta hydrolase fold M481_793 PF01810 LysE type translocator M481_794 PF04069 Substrate binding domain of ABC-type glycine betaine transport system M481_795 PF00005 ABC transporter M481_796 PF00528 Binding-protein-dependent transport system inner membrane component M481_797 PF02668 Taurine catabolism dioxygenase TauD, TfdA family M481_8 PF00953 Glycosyl transferase family 4 M481_8 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 M481_80 PF06965 Na+/H+ antiporter 1 M481_800 PF00535 Glycosyl transferase family 2 M481_801 PF00005 ABC transporter M481_801 PF12848 ABC transporter M481_802 PF02525 Flavodoxin-like fold M481_803 PF02254 TrkA-N domain M481_803 PF00999 Sodium/hydrogen exchanger family M481_804 PF09526 Probable metal-binding protein (DUF2387) M481_805 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase M481_806 PF04102 SlyX M481_807 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase M481_807 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase M481_808 PF13309 HTH domain M481_808 PF08348 YheO-like PAS domain M481_809 PF02635 DsrE/DsrF-like family M481_81 PF01556 DnaJ C terminal domain M481_81 PF00226 DnaJ domain M481_81 PF00684 DnaJ central domain M481_810 PF02635 DsrE/DsrF-like family M481_811 PF04077 DsrH like protein M481_812 PF00164 Ribosomal protein S12/S23 M481_813 PF00177 Ribosomal protein S7p/S5e M481_814 PF00679 Elongation factor G C-terminus M481_814 PF03764 Elongation factor G, domain IV M481_814 PF00009 Elongation factor Tu GTP binding domain M481_814 PF03144 Elongation factor Tu domain 2 M481_814 PF14492 Elongation Factor G, domain II M481_815 PF00009 Elongation factor Tu GTP binding domain M481_815 PF03143 Elongation factor Tu C-terminal domain M481_815 PF03144 Elongation factor Tu domain 2 M481_816 PF01797 Transposase IS200 like M481_817 PF04324 BFD-like [2Fe-2S] binding domain M481_818 PF00210 Ferritin-like domain M481_819 PF02796 Helix-turn-helix domain of resolvase M481_819 PF00665 Integrase core domain M481_82 PF00012 Hsp70 protein M481_820 PF01695 IstB-like ATP binding protein M481_821 PF00338 Ribosomal protein S10p/S20e M481_822 PF00297 Ribosomal protein L3 M481_823 PF00573 Ribosomal protein L4/L1 family M481_824 PF00276 Ribosomal protein L23 M481_825 PF03947 Ribosomal Proteins L2, C-terminal domain M481_825 PF00181 Ribosomal Proteins L2, RNA binding domain M481_826 PF00203 Ribosomal protein S19 M481_827 PF00237 Ribosomal protein L22p/L17e M481_828 PF07650 KH domain M481_828 PF00189 Ribosomal protein S3, C-terminal domain M481_829 PF00252 Ribosomal protein L16p/L10e M481_83 PF01184 GPR1/FUN34/yaaH family M481_830 PF00831 Ribosomal L29 protein M481_831 PF00366 Ribosomal protein S17 M481_832 PF00238 Ribosomal protein L14p/L23e M481_833 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 M481_833 PF00467 KOW motif M481_834 PF00673 ribosomal L5P family C-terminus M481_834 PF00281 Ribosomal protein L5 M481_835 PF00253 Ribosomal protein S14p/S29e M481_836 PF00410 Ribosomal protein S8 M481_837 PF00347 Ribosomal protein L6 M481_838 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast M481_839 PF03719 Ribosomal protein S5, C-terminal domain M481_839 PF00333 Ribosomal protein S5, N-terminal domain M481_840 PF00327 Ribosomal protein L30p/L7e M481_841 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A M481_842 PF00344 SecY translocase M481_843 PF00444 Ribosomal protein L36 M481_844 PF00416 Ribosomal protein S13/S18 M481_845 PF00411 Ribosomal protein S11 M481_846 PF00163 Ribosomal protein S4/S9 N-terminal domain M481_846 PF01479 S4 domain M481_847 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain M481_847 PF01000 RNA polymerase Rpb3/RpoA insert domain M481_847 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain M481_848 PF01196 Ribosomal protein L17 M481_849 PF13411 MerR HTH family regulatory protein M481_85 PF07690 Major Facilitator Superfamily M481_850 PF03889 Alternative ribosome-rescue factor A M481_851 PF01741 Large-conductance mechanosensitive channel, MscL M481_852 PF02080 TrkA-C domain M481_852 PF02254 TrkA-N domain M481_853 PF01029 NusB family M481_853 PF01189 16S rRNA methyltransferase RsmB/F M481_854 PF02911 Formyl transferase, C-terminal domain M481_854 PF00551 Formyl transferase M481_855 PF01327 Polypeptide deformylase M481_856 PF02481 DNA recombination-mediator protein A M481_856 PF17782 DprA winged helix domain M481_857 PF04361 Protein of unknown function (DUF494) M481_858 PF01396 Topoisomerase DNA binding C4 zinc finger M481_859 PF01300 Telomere recombination M481_86 PF00994 Probable molybdopterin binding domain M481_860 PF18317 Shikimate 5'-dehydrogenase C-terminal domain M481_860 PF01488 Shikimate / quinate 5-dehydrogenase M481_860 PF08501 Shikimate dehydrogenase substrate binding domain M481_861 PF00132 Bacterial transferase hexapeptide (six repeats) M481_867 PF01527 Transposase M481_868 PF13276 HTH-like domain M481_868 PF13683 Integrase core domain M481_869 PF01367 5'-3' exonuclease, C-terminal SAM fold M481_869 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain M481_870 PF01695 IstB-like ATP binding protein M481_871 PF00665 Integrase core domain M481_871 PF02796 Helix-turn-helix domain of resolvase M481_873 PF00474 Sodium:solute symporter family M481_874 PF04341 Protein of unknown function, DUF485 M481_875 PF13193 AMP-binding enzyme C-terminal domain M481_875 PF16177 Acetyl-coenzyme A synthetase N-terminus M481_875 PF00501 AMP-binding enzyme M481_876 PF00375 Sodium:dicarboxylate symporter family M481_877 PF00196 Bacterial regulatory proteins, luxR family M481_877 PF00072 Response regulator receiver domain M481_878 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M481_878 PF00512 His Kinase A (phospho-acceptor) domain M481_878 PF01627 Hpt domain M481_878 PF00072 Response regulator receiver domain M481_878 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) M481_878 PF00672 HAMP domain M481_88 PF00923 Transaldolase/Fructose-6-phosphate aldolase M481_882 PF14525 AraC-binding-like domain M481_882 PF12833 Helix-turn-helix domain M481_886 PF01514 Secretory protein of YscJ/FliF family M481_889 PF00771 FHIPEP family M481_89 PF03883 Peroxide stress protein YaaA M481_890 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain M481_890 PF18269 T3SS EscN ATPase C-terminal domain M481_893 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term M481_894 PF00813 FliP family M481_895 PF01313 Bacterial export proteins, family 3 M481_896 PF01311 Bacterial export proteins, family 1 M481_897 PF01312 FlhB HrpN YscU SpaS Family M481_898 PF04143 Sulphur transport M481_899 PF01206 Sulfurtransferase TusA M481_9 PF02875 Mur ligase family, glutamate ligase domain M481_9 PF08245 Mur ligase middle domain M481_9 PF01225 Mur ligase family, catalytic domain M481_900 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M481_900 PF03466 LysR substrate binding domain M481_901 PF03222 Tryptophan/tyrosine permease family M481_902 PF01053 Cys/Met metabolism PLP-dependent enzyme M481_903 PF00005 ABC transporter M481_904 PF01032 FecCD transport family M481_905 PF01497 Periplasmic binding protein M481_906 PF05171 Haemin-degrading HemS.ChuX domain M481_907 PF00593 TonB dependent receptor M481_907 PF07715 TonB-dependent Receptor Plug Domain M481_908 PF10636 Hemin uptake protein hemP M481_909 PF13460 NAD(P)H-binding M481_91 PF14821 Threonine synthase N terminus M481_91 PF00291 Pyridoxal-phosphate dependent enzyme M481_910 PF06228 Haem utilisation ChuX/HutX M481_911 PF04055 Radical SAM superfamily M481_915 PF11202 Phosphoribosyl transferase (PRTase) M481_915 PF15608 PELOTA RNA binding domain M481_919 PF02342 TerD domain M481_92 PF00288 GHMP kinases N terminal domain M481_92 PF08544 GHMP kinases C terminal M481_920 PF02342 TerD domain M481_921 PF05099 Tellurite resistance protein TerB M481_922 PF03741 Integral membrane protein TerC family M481_923 PF02342 TerD domain M481_924 PF02342 TerD domain M481_926 PF13953 PapC C-terminal domain M481_926 PF00577 Outer membrane usher protein M481_926 PF13954 PapC N-terminal domain M481_927 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain M481_93 PF00696 Amino acid kinase family M481_93 PF01842 ACT domain M481_93 PF03447 Homoserine dehydrogenase, NAD binding domain M481_93 PF00742 Homoserine dehydrogenase M481_93 PF13840 ACT domain M481_930 PF08031 Berberine and berberine like M481_930 PF01565 FAD binding domain M481_931 PF12951 Passenger-associated-transport-repeat M481_933 PF04345 Chorismate lyase M481_934 PF01040 UbiA prenyltransferase family M481_935 PF01553 Acyltransferase M481_936 PF01219 Prokaryotic diacylglycerol kinase M481_937 PF01726 LexA DNA binding domain M481_937 PF00717 Peptidase S24-like M481_938 PF01475 Ferric uptake regulator family M481_939 PF01207 Dihydrouridine synthase (Dus) M481_940 PF09583 Phage shock protein G (Phageshock_PspG) M481_941 PF00107 Zinc-binding dehydrogenase M481_941 PF08240 Alcohol dehydrogenase GroES-like domain M481_942 PF03796 DnaB-like helicase C terminal domain M481_942 PF00772 DnaB-like helicase N terminal domain M481_943 PF00842 Alanine racemase, C-terminal domain M481_943 PF01168 Alanine racemase, N-terminal domain M481_944 PF00155 Aminotransferase class I and II M481_945 PF04237 YjbR M481_946 PF00005 ABC transporter M481_946 PF17755 UvrA DNA-binding domain M481_946 PF17760 UvrA interaction domain M481_947 PF00436 Single-strand binding protein family M481_948 PF05336 L-rhamnose mutarotase M481_949 PF00465 Iron-containing alcohol dehydrogenase M481_95 PF00072 Response regulator receiver domain M481_95 PF00486 Transcriptional regulatory protein, C terminal M481_950 PF00596 Class II Aldolase and Adducin N-terminal domain M481_951 PF06134 L-rhamnose isomerase (RhaA) M481_952 PF00370 FGGY family of carbohydrate kinases, N-terminal domain M481_952 PF02782 FGGY family of carbohydrate kinases, C-terminal domain M481_955 PF12833 Helix-turn-helix domain M481_955 PF02311 AraC-like ligand binding domain M481_956 PF12833 Helix-turn-helix domain M481_956 PF02311 AraC-like ligand binding domain M481_957 PF06379 L-rhamnose-proton symport protein (RhaT) M481_96 PF05981 CreA protein M481_964 PF13247 4Fe-4S dicluster domain M481_964 PF07992 Pyridine nucleotide-disulphide oxidoreductase M481_964 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster M481_965 PF12800 4Fe-4S binding domain M481_965 PF13247 4Fe-4S dicluster domain M481_966 PF04879 Molybdopterin oxidoreductase Fe4S4 domain M481_966 PF00384 Molybdopterin oxidoreductase M481_966 PF01568 Molydopterin dinucleotide binding domain M481_967 PF02683 Cytochrome C biogenesis protein transmembrane region M481_967 PF11412 Disulphide bond corrector protein DsbC M481_968 PF03091 CutA1 divalent ion tolerance protein M481_969 PF03605 Anaerobic c4-dicarboxylate membrane transporter M481_970 PF00206 Lyase M481_970 PF10415 Fumarase C C-terminus M481_971 PF04186 FxsA cytoplasmic membrane protein M481_972 PF00166 Chaperonin 10 Kd subunit M481_973 PF00118 TCP-1/cpn60 chaperonin family M481_974 PF13698 Domain of unknown function (DUF4156) M481_975 PF04055 Radical SAM superfamily M481_976 PF09285 Elongation factor P, C-terminal M481_976 PF08207 Elongation factor P (EF-P) KOW-like domain M481_976 PF01132 Elongation factor P (EF-P) OB domain M481_977 PF00893 Small Multidrug Resistance protein M481_978 PF02313 Fumarate reductase subunit D M481_979 PF02300 Fumarate reductase subunit C M481_98 PF00300 Histidine phosphatase superfamily (branch 1) M481_980 PF13085 2Fe-2S iron-sulfur cluster binding domain M481_980 PF13183 4Fe-4S dicluster domain M481_981 PF02910 Fumarate reductase flavoprotein C-term M481_981 PF00890 FAD binding domain M481_982 PF00152 tRNA synthetases class II (D, K and N) M481_983 PF12795 Mechanosensitive ion channel porin domain M481_983 PF12794 Mechanosensitive ion channel inner membrane domain 1 M481_983 PF00924 Mechanosensitive ion channel M481_984 PF02666 Phosphatidylserine decarboxylase M481_985 PF03193 RsgA GTPase M481_986 PF00929 Exonuclease M481_989 PF08331 Domain of unknown function (DUF1730) M481_99 PF12833 Helix-turn-helix domain M481_99 PF06445 GyrI-like small molecule binding domain M481_990 PF03853 YjeF-related protein N-terminus M481_990 PF01256 Carbohydrate kinase M481_991 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE M481_992 PF01520 N-acetylmuramoyl-L-alanine amidase M481_993 PF08676 MutL C terminal dimerisation domain M481_993 PF01119 DNA mismatch repair protein, C-terminal domain M481_995 PF17209 Hfq protein M481_996 PF13167 GTP-binding GTPase N-terminal M481_996 PF16360 GTP-binding GTPase Middle Region M481_996 PF01926 50S ribosome-binding GTPase M481_997 PF12221 Bacterial membrane protein N terminal M481_997 PF01145 SPFH domain / Band 7 family M481_998 PF01145 SPFH domain / Band 7 family M481_999 PF09838 Uncharacterized protein conserved in bacteria (DUF2065)