locus-tag class description LDH65_00005 PF00308 Bacterial dnaA protein LDH65_00005 PF08299 Bacterial dnaA protein helix-turn-helix LDH65_00005 PF11638 DnaA N-terminal domain LDH65_00010 PF00712 DNA polymerase III beta subunit, N-terminal domain LDH65_00010 PF02767 DNA polymerase III beta subunit, central domain LDH65_00010 PF02768 DNA polymerase III beta subunit, C-terminal domain LDH65_00020 PF02463 RecF/RecN/SMC N terminal domain LDH65_00025 PF00204 DNA gyrase B LDH65_00025 PF00986 DNA gyrase B subunit, carboxyl terminus LDH65_00025 PF18053 DNA gyrase B subunit insert domain LDH65_00025 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LDH65_00025 PF01751 Toprim domain LDH65_00040 PF02423 Ornithine cyclodeaminase/mu-crystallin family LDH65_00045 PF00291 Pyridoxal-phosphate dependent enzyme LDH65_00045 PF13291 ACT domain LDH65_00055 PF07119 Protein of unknown function (DUF1375) LDH65_00060 PF00011 Hsp20/alpha crystallin family LDH65_00065 PF00011 Hsp20/alpha crystallin family LDH65_00070 PF06826 Predicted Permease Membrane Region LDH65_00070 PF02080 TrkA-C domain LDH65_00075 PF00155 Aminotransferase class I and II LDH65_00085 PF00128 Alpha amylase, catalytic domain LDH65_00090 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain LDH65_00090 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain LDH65_00100 PF13488 Glycine zipper LDH65_00100 PF00691 OmpA family LDH65_00110 PF03352 Methyladenine glycosylase LDH65_00115 PF02091 Glycyl-tRNA synthetase alpha subunit LDH65_00120 PF05746 DALR anticodon binding domain LDH65_00120 PF02092 Glycyl-tRNA synthetase beta subunit LDH65_00125 PF11254 Protein of unknown function (DUF3053) LDH65_00130 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 LDH65_00130 PF02378 Phosphotransferase system, EIIC LDH65_00130 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit LDH65_00135 PF01232 Mannitol dehydrogenase Rossmann domain LDH65_00135 PF08125 Mannitol dehydrogenase C-terminal domain LDH65_00140 PF05068 Mannitol repressor LDH65_00145 PF10928 Protein of unknown function (DUF2810) LDH65_00160 PF00672 HAMP domain LDH65_00160 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LDH65_00160 PF02203 Tar ligand binding domain homologue LDH65_00165 PF02777 Iron/manganese superoxide dismutases, C-terminal domain LDH65_00165 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain LDH65_00170 PF02634 FdhD/NarQ family LDH65_00180 PF13247 4Fe-4S dicluster domain LDH65_00180 PF09163 Formate dehydrogenase N, transmembrane LDH65_00185 PF01292 Prokaryotic cytochrome b561 LDH65_00190 PF04216 Protein involved in formate dehydrogenase formation LDH65_00195 PF12390 Selenocysteine synthase N terminal LDH65_00195 PF03841 L-seryl-tRNA selenium transferase LDH65_00200 PF00009 Elongation factor Tu GTP binding domain LDH65_00200 PF03144 Elongation factor Tu domain 2 LDH65_00200 PF09106 Elongation factor SelB, winged helix LDH65_00200 PF09107 Elongation factor SelB, winged helix LDH65_00230 PF07690 Major Facilitator Superfamily LDH65_00245 PF01757 Acyltransferase family LDH65_00250 PF00419 Fimbrial protein LDH65_00260 PF13953 PapC C-terminal domain LDH65_00260 PF13954 PapC N-terminal domain LDH65_00260 PF00577 Outer membrane usher protein LDH65_00265 PF02753 Pili assembly chaperone PapD, C-terminal domain LDH65_00265 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain LDH65_00275 PF00370 FGGY family of carbohydrate kinases, N-terminal domain LDH65_00275 PF02782 FGGY family of carbohydrate kinases, C-terminal domain LDH65_00285 PF13407 Periplasmic binding protein domain LDH65_00290 PF00005 ABC transporter LDH65_00295 PF02653 Branched-chain amino acid transport system / permease component LDH65_00300 PF12833 Helix-turn-helix domain LDH65_00310 PF13356 Arm DNA-binding domain LDH65_00310 PF14659 Phage integrase, N-terminal SAM-like domain LDH65_00310 PF00589 Phage integrase family LDH65_00320 PF04606 Ogr/Delta-like zinc finger LDH65_00355 PF00005 ABC transporter LDH65_00360 PF01032 FecCD transport family LDH65_00365 PF01032 FecCD transport family LDH65_00370 PF01497 Periplasmic binding protein LDH65_00385 PF00156 Phosphoribosyl transferase domain LDH65_00390 PF00291 Pyridoxal-phosphate dependent enzyme LDH65_00395 PF17391 Urocanase N-terminal domain LDH65_00395 PF17392 Urocanase C-terminal domain LDH65_00395 PF01175 Urocanase Rossmann-like domain LDH65_00400 PF00221 Aromatic amino acid lyase LDH65_00405 PF00324 Amino acid permease LDH65_00410 PF12146 Serine aminopeptidase, S33 LDH65_00415 PF00884 Sulfatase LDH65_00415 PF08019 Phosphoethanolamine transferase EptA/EptB LDH65_00420 PF00196 Bacterial regulatory proteins, luxR family LDH65_00420 PF00072 Response regulator receiver domain LDH65_00430 PF02796 Helix-turn-helix domain of resolvase LDH65_00430 PF00665 Integrase core domain LDH65_00435 PF01695 IstB-like ATP binding protein LDH65_00440 PF05231 MASE1 LDH65_00440 PF07730 Histidine kinase LDH65_00440 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LDH65_00445 PF07690 Major Facilitator Superfamily LDH65_00460 PF05594 Haemagluttinin repeat LDH65_00460 PF05860 haemagglutination activity domain LDH65_00460 PF13332 Hemagglutinin repeat LDH65_00460 PF04829 Pre-toxin domain with VENN motif LDH65_00465 PF17287 POTRA domain LDH65_00465 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB LDH65_00465 PF08479 POTRA domain, ShlB-type LDH65_00470 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle LDH65_00480 PF00528 Binding-protein-dependent transport system inner membrane component LDH65_00480 PF12911 N-terminal TM domain of oligopeptide transport permease C LDH65_00485 PF00005 ABC transporter LDH65_00485 PF08352 Oligopeptide/dipeptide transporter, C-terminal region LDH65_00490 PF00005 ABC transporter LDH65_00490 PF08352 Oligopeptide/dipeptide transporter, C-terminal region LDH65_00500 PF00990 Diguanylate cyclase, GGDEF domain LDH65_00500 PF00563 EAL domain LDH65_00500 PF17154 Gammaproteobacterial periplasmic sensor domain LDH65_00500 PF00672 HAMP domain LDH65_00505 PF06178 Oligogalacturonate-specific porin protein (KdgM) LDH65_00510 PF06917 Periplasmic pectate lyase LDH65_00520 PF00375 Sodium:dicarboxylate symporter family LDH65_00525 PF00675 Insulinase (Peptidase family M16) LDH65_00525 PF05193 Peptidase M16 inactive domain LDH65_00530 PF00294 pfkB family carbohydrate kinase LDH65_00535 PF01361 Tautomerase enzyme LDH65_00540 PF00563 EAL domain LDH65_00545 PF05170 AsmA family LDH65_00550 PF02611 CDP-diacylglycerol pyrophosphatase LDH65_00555 PF03631 Virulence factor BrkB LDH65_00580 PF02595 Glycerate kinase family LDH65_00585 PF02447 GntP family permease LDH65_00595 PF17853 GGDEF-like domain LDH65_00595 PF13556 PucR C-terminal helix-turn-helix domain LDH65_00595 PF05651 Putative sugar diacid recognition LDH65_00600 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain LDH65_00600 PF07992 Pyridine nucleotide-disulphide oxidoreductase LDH65_00605 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ LDH65_00610 PF01432 Peptidase family M3 LDH65_00615 PF04445 Putative SAM-dependent methyltransferase LDH65_00620 PF00413 Matrixin LDH65_00620 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) LDH65_00620 PF08548 Peptidase M10 serralysin C terminal LDH65_00625 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase LDH65_00625 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain LDH65_00630 PF00582 Universal stress protein family LDH65_00635 PF10625 Universal stress protein B (UspB) LDH65_00645 PF01384 Phosphate transporter family LDH65_00655 PF00072 Response regulator receiver domain LDH65_00655 PF13188 PAS domain LDH65_00655 PF00512 His Kinase A (phospho-acceptor) domain LDH65_00655 PF08448 PAS fold LDH65_00655 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LDH65_00660 PF00005 ABC transporter LDH65_00665 PF02653 Branched-chain amino acid transport system / permease component LDH65_00670 PF13407 Periplasmic binding protein domain LDH65_00680 PF01116 Fructose-bisphosphate aldolase class-II LDH65_00690 PF00072 Response regulator receiver domain LDH65_00690 PF00486 Transcriptional regulatory protein, C terminal LDH65_00700 PF02678 Pirin LDH65_00700 PF17954 Quercetinase C-terminal cupin domain LDH65_00705 PF00356 Bacterial regulatory proteins, lacI family LDH65_00705 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family LDH65_00710 PF02447 GntP family permease LDH65_00715 PF01202 Shikimate kinase LDH65_00735 PF01914 MarC family integral membrane protein LDH65_00740 PF01118 Semialdehyde dehydrogenase, NAD binding domain LDH65_00740 PF02774 Semialdehyde dehydrogenase, dimerisation domain LDH65_00770 PF09134 Invasin, domain 3 LDH65_00770 PF02369 Bacterial Ig-like domain (group 1) LDH65_00770 PF11924 Inverse autotransporter, beta-domain LDH65_00770 PF07979 Intimin C-type lectin domain LDH65_00775 PF06580 Histidine kinase LDH65_00775 PF07694 5TMR of 5TMR-LYT LDH65_00780 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) LDH65_00780 PF02806 Alpha amylase, C-terminal all-beta domain LDH65_00780 PF00128 Alpha amylase, catalytic domain LDH65_00785 PF18390 Glycogen debranching enzyme C-terminal domain LDH65_00785 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) LDH65_00785 PF00128 Alpha amylase, catalytic domain LDH65_00790 PF00483 Nucleotidyl transferase LDH65_00795 PF00534 Glycosyl transferases group 1 LDH65_00795 PF08323 Starch synthase catalytic domain LDH65_00800 PF00343 Carbohydrate phosphorylase LDH65_00805 PF16901 C-terminal domain of alpha-glycerophosphate oxidase LDH65_00805 PF01266 FAD dependent oxidoreductase LDH65_00825 PF00665 Integrase core domain LDH65_00825 PF02796 Helix-turn-helix domain of resolvase LDH65_00830 PF01695 IstB-like ATP binding protein LDH65_00840 PF00311 Phosphoenolpyruvate carboxylase LDH65_00845 PF07687 Peptidase dimerisation domain LDH65_00845 PF01546 Peptidase family M20/M25/M40 LDH65_00850 PF01118 Semialdehyde dehydrogenase, NAD binding domain LDH65_00850 PF02774 Semialdehyde dehydrogenase, dimerisation domain LDH65_00855 PF00696 Amino acid kinase family LDH65_00860 PF14698 Argininosuccinate lyase C-terminal LDH65_00860 PF00206 Lyase LDH65_00865 PF00593 TonB dependent receptor LDH65_00865 PF07715 TonB-dependent Receptor Plug Domain LDH65_00875 PF00005 ABC transporter LDH65_00875 PF00664 ABC transporter transmembrane region LDH65_00880 PF00529 HlyD membrane-fusion protein of T1SS LDH65_00885 PF03544 Gram-negative bacterial TonB protein C-terminal LDH65_00890 PF07992 Pyridine nucleotide-disulphide oxidoreductase LDH65_00890 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain LDH65_00895 PF00462 Glutaredoxin LDH65_00895 PF08534 Redoxin LDH65_00900 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LDH65_00900 PF03466 LysR substrate binding domain LDH65_00905 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain LDH65_00905 PF07992 Pyridine nucleotide-disulphide oxidoreductase LDH65_00910 PF00440 Bacterial regulatory proteins, tetR family LDH65_00915 PF07226 Protein of unknown function (DUF1422) LDH65_00920 PF05958 tRNA (Uracil-5-)-methyltransferase LDH65_00925 PF07715 TonB-dependent Receptor Plug Domain LDH65_00925 PF00593 TonB dependent receptor LDH65_00930 PF01177 Asp/Glu/Hydantoin racemase LDH65_00965 PF13407 Periplasmic binding protein domain LDH65_00970 PF00005 ABC transporter LDH65_00975 PF02653 Branched-chain amino acid transport system / permease component LDH65_00980 PF02653 Branched-chain amino acid transport system / permease component LDH65_00985 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LDH65_00985 PF03466 LysR substrate binding domain LDH65_00990 PF04219 Protein of unknown function, DUF LDH65_00995 PF01078 Magnesium chelatase, subunit ChlI LDH65_00995 PF13335 Magnesium chelatase, subunit ChlI C-terminal LDH65_01000 PF08046 IlvGEDA operon leader peptide LDH65_01005 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain LDH65_01005 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain LDH65_01005 PF00205 Thiamine pyrophosphate enzyme, central domain LDH65_01015 PF01063 Amino-transferase class IV LDH65_01020 PF00920 Dehydratase family LDH65_01025 PF00585 C-terminal regulatory domain of Threonine dehydratase LDH65_01025 PF00291 Pyridoxal-phosphate dependent enzyme LDH65_01055 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LDH65_01055 PF03466 LysR substrate binding domain LDH65_01060 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain LDH65_01060 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain LDH65_01085 PF01320 Colicin immunity protein / pyocin immunity protein LDH65_01090 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain LDH65_01090 PF02753 Pili assembly chaperone PapD, C-terminal domain LDH65_01100 PF13954 PapC N-terminal domain LDH65_01100 PF00577 Outer membrane usher protein LDH65_01100 PF13953 PapC C-terminal domain LDH65_01105 PF02753 Pili assembly chaperone PapD, C-terminal domain LDH65_01105 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain LDH65_01115 PF00872 Transposase, Mutator family LDH65_01135 PF00580 UvrD/REP helicase N-terminal domain LDH65_01135 PF13361 UvrD-like helicase C-terminal domain LDH65_01145 PF00271 Helicase conserved C-terminal domain LDH65_01145 PF00270 DEAD/DEAH box helicase LDH65_01150 PF00085 Thioredoxin LDH65_01155 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain LDH65_01155 PF07497 Rho termination factor, RNA-binding domain LDH65_01155 PF07498 Rho termination factor, N-terminal domain LDH65_01160 PF00953 Glycosyl transferase family 4 LDH65_01165 PF02706 Chain length determinant protein LDH65_01170 PF02350 UDP-N-acetylglucosamine 2-epimerase LDH65_01175 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain LDH65_01175 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain LDH65_01175 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain LDH65_01180 PF16363 GDP-mannose 4,6 dehydratase LDH65_01185 PF00483 Nucleotidyl transferase LDH65_01195 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family LDH65_01200 PF01943 Polysaccharide biosynthesis protein LDH65_01205 PF07429 4-alpha-L-fucosyltransferase glycosyl transferase group 56 LDH65_01210 PF06899 WzyE protein, O-antigen assembly polymerase LDH65_01215 PF03808 Glycosyl transferase WecB/TagA/CpsF family LDH65_01220 PF00324 Amino acid permease LDH65_01250 PF07219 HemY protein N-terminus LDH65_01250 PF07719 Tetratricopeptide repeat LDH65_01255 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase LDH65_01260 PF02602 Uroporphyrinogen-III synthase HemD LDH65_01265 PF03900 Porphobilinogen deaminase, C-terminal domain LDH65_01265 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain LDH65_01275 PF12633 Adenylate cyclase NT domain LDH65_01275 PF01295 Adenylate cyclase, class-I LDH65_01280 PF01491 Frataxin-like domain LDH65_01285 PF13627 Prokaryotic lipoprotein-attachment site LDH65_01290 PF01678 Diaminopimelate epimerase LDH65_01295 PF04340 Protein of unknown function, DUF484 LDH65_01300 PF02899 Phage integrase, N-terminal SAM-like domain LDH65_01300 PF00589 Phage integrase family LDH65_01305 PF13419 Haloacid dehalogenase-like hydrolase LDH65_01310 PF13361 UvrD-like helicase C-terminal domain LDH65_01310 PF00580 UvrD/REP helicase N-terminal domain LDH65_01325 PF09370 Phosphoenolpyruvate hydrolase-like LDH65_01330 PF01544 CorA-like Mg2+ transporter protein LDH65_01335 PF00892 EamA-like transporter family LDH65_01340 PF03061 Thioesterase superfamily LDH65_01345 PF02253 Phospholipase A1 LDH65_01350 PF00270 DEAD/DEAH box helicase LDH65_01350 PF00271 Helicase conserved C-terminal domain LDH65_01350 PF00570 HRDC domain LDH65_01350 PF16124 RecQ zinc-binding LDH65_01350 PF09382 RQC domain LDH65_01355 PF01810 LysE type translocator LDH65_01360 PF01810 LysE type translocator LDH65_01365 PF12146 Serine aminopeptidase, S33 LDH65_01380 PF03009 Glycerophosphoryl diester phosphodiesterase family LDH65_01390 PF01266 FAD dependent oxidoreductase LDH65_01390 PF04324 BFD-like [2Fe-2S] binding domain LDH65_01395 PF00890 FAD binding domain LDH65_01400 PF02754 Cysteine-rich domain LDH65_01400 PF13183 4Fe-4S dicluster domain LDH65_01405 PF08786 DcrB LDH65_01410 PF02592 Putative vitamin uptake transporter LDH65_01415 PF01206 Sulfurtransferase TusA LDH65_01420 PF00403 Heavy-metal-associated domain LDH65_01425 PF07947 YhhN family LDH65_01440 PF06611 Protein of unknown function (DUF1145) LDH65_01450 PF02881 SRP54-type protein, helical bundle domain LDH65_01450 PF00448 SRP54-type protein, GTPase domain LDH65_01450 PF02881 SRP54-type protein, helical bundle domain LDH65_01450 PF00448 SRP54-type protein, GTPase domain LDH65_01455 PF00005 ABC transporter LDH65_01460 PF02687 FtsX-like permease family LDH65_01460 PF18075 FtsX extracellular domain LDH65_01465 PF04542 Sigma-70 region 2 LDH65_01465 PF00140 Sigma-70 factor, region 1.2 LDH65_01465 PF04545 Sigma-70, region 4 LDH65_01470 PF01797 Transposase IS200 like LDH65_01475 PF12568 Acetyltransferase (GNAT) domain, PanZ LDH65_01480 PF13458 Periplasmic binding protein LDH65_01485 PF02653 Branched-chain amino acid transport system / permease component LDH65_01490 PF02653 Branched-chain amino acid transport system / permease component LDH65_01490 PF11862 Domain of unknown function (DUF3382) LDH65_01495 PF00005 ABC transporter LDH65_01495 PF12399 Branched-chain amino acid ATP-binding cassette transporter LDH65_01500 PF00005 ABC transporter LDH65_01540 PF13416 Bacterial extracellular solute-binding protein LDH65_01545 PF00528 Binding-protein-dependent transport system inner membrane component LDH65_01550 PF00528 Binding-protein-dependent transport system inner membrane component LDH65_01555 PF00005 ABC transporter LDH65_01555 PF17912 MalK OB fold domain LDH65_01560 PF03009 Glycerophosphoryl diester phosphodiesterase family LDH65_01565 PF03547 Membrane transport protein LDH65_01570 PF00892 EamA-like transporter family LDH65_01575 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LDH65_01575 PF03466 LysR substrate binding domain LDH65_01580 PF08267 Cobalamin-independent synthase, N-terminal domain LDH65_01580 PF01717 Cobalamin-independent synthase, Catalytic domain LDH65_01585 PF01738 Dienelactone hydrolase family LDH65_01590 PF01048 Phosphorylase superfamily LDH65_01600 PF02554 Carbon starvation protein CstA LDH65_01600 PF13722 5TM C-terminal transporter carbon starvation CstA LDH65_01605 PF09335 SNARE associated Golgi protein LDH65_01610 PF02646 RmuC family LDH65_01615 PF01209 ubiE/COQ5 methyltransferase family LDH65_01620 PF02036 SCP-2 sterol transfer family LDH65_01625 PF03109 ABC1 family LDH65_01630 PF02416 mttA/Hcf106 family LDH65_01640 PF00902 Sec-independent protein translocase protein (TatC) LDH65_01650 PF02796 Helix-turn-helix domain of resolvase LDH65_01650 PF00665 Integrase core domain LDH65_01655 PF01695 IstB-like ATP binding protein LDH65_01660 PF01026 TatD related DNase LDH65_01665 PF00490 Delta-aminolevulinic acid dehydratase LDH65_01670 PF02357 Transcription termination factor nusG LDH65_01675 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase LDH65_01680 PF00970 Oxidoreductase FAD-binding domain LDH65_01680 PF00175 Oxidoreductase NAD-binding domain LDH65_01685 PF02803 Thiolase, C-terminal domain LDH65_01685 PF00108 Thiolase, N-terminal domain LDH65_01690 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain LDH65_01690 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain LDH65_01690 PF00378 Enoyl-CoA hydratase/isomerase LDH65_01695 PF00557 Metallopeptidase family M24 LDH65_01700 PF01205 Uncharacterized protein family UPF0029 LDH65_01700 PF09186 Domain of unknown function (DUF1949) LDH65_01715 PF02386 Cation transport protein LDH65_01720 PF12724 Flavodoxin domain LDH65_01750 PF01565 FAD binding domain LDH65_01750 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain LDH65_01755 PF02237 Biotin protein ligase C terminal domain LDH65_01755 PF03099 Biotin/lipoate A/B protein ligase family LDH65_01755 PF08279 HTH domain LDH65_01760 PF00485 Phosphoribulokinase / Uridine kinase family LDH65_01765 PF13673 Acetyltransferase (GNAT) domain LDH65_01770 PF02796 Helix-turn-helix domain of resolvase LDH65_01770 PF00665 Integrase core domain LDH65_01775 PF01695 IstB-like ATP binding protein LDH65_01800 PF00009 Elongation factor Tu GTP binding domain LDH65_01800 PF03144 Elongation factor Tu domain 2 LDH65_01800 PF03143 Elongation factor Tu C-terminal domain LDH65_01805 PF00584 SecE/Sec61-gamma subunits of protein translocation complex LDH65_01810 PF00467 KOW motif LDH65_01810 PF02357 Transcription termination factor nusG LDH65_01815 PF00298 Ribosomal protein L11, RNA binding domain LDH65_01815 PF03946 Ribosomal protein L11, N-terminal domain LDH65_01820 PF00687 Ribosomal protein L1p/L10e family LDH65_01825 PF00466 Ribosomal protein L10 LDH65_01830 PF00542 Ribosomal protein L7/L12 C-terminal domain LDH65_01830 PF16320 Ribosomal protein L7/L12 dimerisation domain LDH65_01835 PF00562 RNA polymerase Rpb2, domain 6 LDH65_01835 PF04563 RNA polymerase beta subunit LDH65_01835 PF04565 RNA polymerase Rpb2, domain 3 LDH65_01835 PF10385 RNA polymerase beta subunit external 1 domain LDH65_01835 PF04560 RNA polymerase Rpb2, domain 7 LDH65_01835 PF04561 RNA polymerase Rpb2, domain 2 LDH65_01840 PF04998 RNA polymerase Rpb1, domain 5 LDH65_01840 PF05000 RNA polymerase Rpb1, domain 4 LDH65_01840 PF04983 RNA polymerase Rpb1, domain 3 LDH65_01840 PF00623 RNA polymerase Rpb1, domain 2 LDH65_01840 PF04997 RNA polymerase Rpb1, domain 1 LDH65_01850 PF04055 Radical SAM superfamily LDH65_01850 PF06968 Biotin and Thiamin Synthesis associated domain LDH65_01855 PF05690 Thiazole biosynthesis protein ThiG LDH65_01865 PF00899 ThiF family LDH65_01870 PF02581 Thiamine monophosphate synthase LDH65_01875 PF13667 ThiC-associated domain LDH65_01875 PF01964 Radical SAM ThiC family LDH65_01880 PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ LDH65_01885 PF00293 NUDIX domain LDH65_01885 PF09297 NADH pyrophosphatase zinc ribbon domain LDH65_01895 PF01208 Uroporphyrinogen decarboxylase (URO-D) LDH65_01900 PF04493 Endonuclease V LDH65_01905 PF04222 Protein of unknown function (DUF416) LDH65_01910 PF00216 Bacterial DNA-binding protein LDH65_01915 PF07356 Protein of unknown function (DUF1481) LDH65_01920 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain LDH65_01920 PF02843 Phosphoribosylglycinamide synthetase, C domain LDH65_01920 PF02844 Phosphoribosylglycinamide synthetase, N domain LDH65_01925 PF02142 MGS-like domain LDH65_01925 PF01808 AICARFT/IMPCHase bienzyme LDH65_01965 PF04204 Homoserine O-succinyltransferase LDH65_01970 PF01274 Malate synthase LDH65_01975 PF00463 Isocitrate lyase family LDH65_01980 PF06315 Isocitrate dehydrogenase kinase/phosphatase (AceK) LDH65_01990 PF02574 Homocysteine S-methyltransferase LDH65_01990 PF02310 B12 binding domain LDH65_01990 PF02607 B12 binding domain LDH65_01990 PF02965 Vitamin B12 dependent methionine synthase, activation domain LDH65_01990 PF00809 Pterin binding enzyme LDH65_01995 PF05860 haemagglutination activity domain LDH65_01995 PF13332 Hemagglutinin repeat LDH65_02000 PF08479 POTRA domain, ShlB-type LDH65_02000 PF17287 POTRA domain LDH65_02000 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB LDH65_02005 PF08479 POTRA domain, ShlB-type LDH65_02005 PF17287 POTRA domain LDH65_02005 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB LDH65_02010 PF00696 Amino acid kinase family LDH65_02010 PF01842 ACT domain LDH65_02015 PF00342 Phosphoglucose isomerase LDH65_02020 PF06146 Phosphate-starvation-inducible E LDH65_02025 PF00528 Binding-protein-dependent transport system inner membrane component LDH65_02030 PF14785 Maltose transport system permease protein MalF P2 domain LDH65_02030 PF00528 Binding-protein-dependent transport system inner membrane component LDH65_02035 PF01547 Bacterial extracellular solute-binding protein LDH65_02045 PF00005 ABC transporter LDH65_02045 PF17912 MalK OB fold domain LDH65_02050 PF02264 LamB porin LDH65_02055 PF07148 Maltose operon periplasmic protein precursor (MalM) LDH65_02065 PF05638 Type VI secretion system effector, Hcp LDH65_02075 PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath LDH65_02085 PF05947 Type VI secretion system, TssF LDH65_02095 PF00312 Ribosomal protein S15 LDH65_02100 PF09157 Pseudouridine synthase II TruB, C-terminal LDH65_02100 PF16198 tRNA pseudouridylate synthase B C-terminal domain LDH65_02100 PF01509 TruB family pseudouridylate synthase (N terminal domain) LDH65_02105 PF02033 Ribosome-binding factor A LDH65_02110 PF00009 Elongation factor Tu GTP binding domain LDH65_02110 PF03144 Elongation factor Tu domain 2 LDH65_02110 PF11987 Translation-initiation factor 2 LDH65_02110 PF08364 Bacterial translation initiation factor IF-2 associated region LDH65_02110 PF04760 Translation initiation factor IF-2, N-terminal region LDH65_02115 PF00575 S1 RNA binding domain LDH65_02115 PF13184 NusA-like KH domain LDH65_02115 PF08529 NusA N-terminal domain LDH65_02120 PF17384 RimP C-terminal SH3 domain LDH65_02120 PF02576 RimP N-terminal domain LDH65_02135 PF03840 Preprotein translocase SecG subunit LDH65_02140 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I LDH65_02140 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II LDH65_02140 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III LDH65_02140 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain LDH65_02145 PF00809 Pterin binding enzyme LDH65_02150 PF00004 ATPase family associated with various cellular activities (AAA) LDH65_02150 PF17862 AAA+ lid domain LDH65_02150 PF06480 FtsH Extracellular LDH65_02150 PF01434 Peptidase family M41 LDH65_02155 PF01728 FtsJ-like methyltransferase LDH65_02160 PF01985 CRS1 / YhbY (CRM) domain LDH65_02165 PF03449 Transcription elongation factor, N-terminal LDH65_02165 PF01272 Transcription elongation factor, GreA/GreB, C-term LDH65_02170 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family LDH65_02175 PF00486 Transcriptional regulatory protein, C terminal LDH65_02175 PF00072 Response regulator receiver domain LDH65_02180 PF00512 His Kinase A (phospho-acceptor) domain LDH65_02180 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LDH65_02180 PF00672 HAMP domain LDH65_02185 PF01018 GTP1/OBG LDH65_02185 PF01926 50S ribosome-binding GTPase LDH65_02190 PF00892 EamA-like transporter family LDH65_02195 PF01016 Ribosomal L27 protein LDH65_02200 PF00829 Ribosomal prokaryotic L21 protein LDH65_02205 PF00348 Polyprenyl synthetase LDH65_02215 PF01695 IstB-like ATP binding protein LDH65_02220 PF02796 Helix-turn-helix domain of resolvase LDH65_02220 PF00665 Integrase core domain LDH65_02225 PF13693 Winged helix-turn-helix DNA-binding LDH65_02230 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain LDH65_02230 PF00056 lactate/malate dehydrogenase, NAD binding domain LDH65_02235 PF01316 Arginine repressor, DNA binding domain LDH65_02235 PF02863 Arginine repressor, C-terminal domain LDH65_02245 PF08245 Mur ligase middle domain LDH65_02245 PF02875 Mur ligase family, glutamate ligase domain LDH65_02245 PF01225 Mur ligase family, catalytic domain LDH65_02250 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain LDH65_02255 PF00719 Inorganic pyrophosphatase LDH65_02260 PF06094 Gamma-glutamyl cyclotransferase, AIG2-like LDH65_02265 PF04357 TamB, inner membrane protein subunit of TAM complex LDH65_02270 PF17243 POTRA domain TamA domain 1 LDH65_02270 PF07244 Surface antigen variable number repeat LDH65_02270 PF01103 Surface antigen LDH65_02275 PF01625 Peptide methionine sulfoxide reductase LDH65_02280 PF00571 CBS domain LDH65_02280 PF03471 Transporter associated domain LDH65_02280 PF01595 Cyclin M transmembrane N-terminal domain LDH65_02285 PF06526 Protein of unknown function (DUF1107) LDH65_02290 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) LDH65_02295 PF00459 Inositol monophosphatase family LDH65_02300 PF02872 5'-nucleotidase, C-terminal domain LDH65_02300 PF00149 Calcineurin-like phosphoesterase LDH65_02305 PF01814 Hemerythrin HHE cation binding domain LDH65_02305 PF04405 Domain of Unknown function (DUF542) LDH65_02310 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase LDH65_02310 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase LDH65_02315 PF04225 Opacity-associated protein A LysM-like domain LDH65_02315 PF08525 Opacity-associated protein A N-terminal motif LDH65_02325 PF01797 Transposase IS200 like LDH65_02330 PF03948 Ribosomal protein L9, C-terminal domain LDH65_02330 PF01281 Ribosomal protein L9, N-terminal domain LDH65_02335 PF01084 Ribosomal protein S18 LDH65_02340 PF00436 Single-strand binding protein family LDH65_02345 PF01250 Ribosomal protein S6 LDH65_02350 PF00326 Prolyl oligopeptidase family LDH65_02355 PF02796 Helix-turn-helix domain of resolvase LDH65_02355 PF00665 Integrase core domain LDH65_02360 PF01695 IstB-like ATP binding protein LDH65_02370 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LDH65_02370 PF03466 LysR substrate binding domain LDH65_02375 PF02678 Pirin LDH65_02375 PF17954 Quercetinase C-terminal cupin domain LDH65_02385 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases LDH65_02390 PF04348 LppC putative lipoprotein LDH65_02395 PF02021 Uncharacterised protein family UPF0102 LDH65_02400 PF13580 SIS domain LDH65_02405 PF04972 BON domain LDH65_02410 PF00912 Transglycosylase LDH65_02420 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LDH65_02420 PF00512 His Kinase A (phospho-acceptor) domain LDH65_02420 PF18415 Histidine kinase receptor ArcB trans-membrane domain LDH65_02420 PF01627 Hpt domain LDH65_02420 PF00989 PAS fold LDH65_02420 PF00072 Response regulator receiver domain LDH65_02425 PF04055 Radical SAM superfamily LDH65_02425 PF16199 Radical_SAM C-terminal domain LDH65_02430 PF00310 Glutamine amidotransferases class-II LDH65_02430 PF04898 Glutamate synthase central domain LDH65_02430 PF01645 Conserved region in glutamate synthase LDH65_02430 PF01493 GXGXG motif LDH65_02435 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster LDH65_02435 PF07992 Pyridine nucleotide-disulphide oxidoreductase LDH65_02445 PF04386 Stringent starvation protein B LDH65_02450 PF00043 Glutathione S-transferase, C-terminal domain LDH65_02450 PF02798 Glutathione S-transferase, N-terminal domain LDH65_02460 PF00380 Ribosomal protein S9/S16 LDH65_02465 PF00572 Ribosomal protein L13 LDH65_02470 PF03969 AFG1-like ATPase LDH65_02475 PF06295 Protein of unknown function (DUF1043) LDH65_02480 PF13180 PDZ domain LDH65_02480 PF00595 PDZ domain LDH65_02485 PF01797 Transposase IS200 like LDH65_02490 PF13180 PDZ domain LDH65_02495 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) LDH65_02500 PF01722 BolA-like protein LDH65_02505 PF13466 STAS domain LDH65_02510 PF05494 MlaC protein LDH65_02515 PF02470 MlaD protein LDH65_02520 PF02405 Permease MlaE LDH65_02525 PF00005 ABC transporter LDH65_02530 PF01699 Sodium/calcium exchanger protein LDH65_02535 PF00571 CBS domain LDH65_02535 PF01380 SIS domain LDH65_02545 PF06835 Lipopolysaccharide-assembly, LptC-related LDH65_02550 PF03968 OstA-like protein LDH65_02555 PF00005 ABC transporter LDH65_02555 PF12399 Branched-chain amino acid ATP-binding cassette transporter LDH65_02560 PF00309 Sigma-54 factor, Activator interacting domain (AID) LDH65_02560 PF04963 Sigma-54 factor, core binding domain LDH65_02560 PF04552 Sigma-54, DNA binding domain LDH65_02570 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 LDH65_02575 PF03668 P-loop ATPase protein family LDH65_02580 PF00381 PTS HPr component phosphorylation site LDH65_02585 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain LDH65_02585 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain LDH65_02590 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain LDH65_02590 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain LDH65_02595 PF01042 Endoribonuclease L-PSP LDH65_02605 PF00356 Bacterial regulatory proteins, lacI family LDH65_02610 PF00367 phosphotransferase system, EIIB LDH65_02610 PF02378 Phosphotransferase system, EIIC LDH65_02615 PF11941 Domain of unknown function (DUF3459) LDH65_02615 PF00128 Alpha amylase, catalytic domain LDH65_02620 PF01272 Transcription elongation factor, GreA/GreB, C-term LDH65_02620 PF14760 Rnk N-terminus LDH65_02625 PF07361 Cytochrome b562 LDH65_02635 PF01523 Putative modulator of DNA gyrase LDH65_02640 PF04751 Protein of unknown function (DUF615) LDH65_02645 PF01337 Barstar (barnase inhibitor) LDH65_02660 PF04632 Fusaric acid resistance protein family LDH65_02665 PF13533 Biotin-lipoyl like LDH65_02670 PF07869 Protein of unknown function (DUF1656) LDH65_02675 PF03466 LysR substrate binding domain LDH65_02675 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LDH65_02680 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LDH65_02680 PF03466 LysR substrate binding domain LDH65_02695 PF18413 Neuraminidase-like domain LDH65_02695 PF18276 Tc toxin complex TcA C-terminal TcB-binding domain LDH65_02700 PF03534 Salmonella virulence plasmid 65kDa B protein LDH65_02700 PF12255 Insecticide toxin TcdB middle/C-terminal region LDH65_02700 PF12256 Insecticide toxin TcdB middle/N-terminal region LDH65_02725 PF05785 Rho-activating domain of cytotoxic necrotizing factor LDH65_02725 PF18807 Tripartite Tc toxins repeat LDH65_02730 PF14431 YwqJ-like deaminase LDH65_02730 PF18807 Tripartite Tc toxins repeat LDH65_02735 PF01523 Putative modulator of DNA gyrase LDH65_02740 PF00795 Carbon-nitrogen hydrolase LDH65_02745 PF13502 AsmA-like C-terminal region LDH65_02745 PF13116 Protein of unknown function LDH65_02750 PF00575 S1 RNA binding domain LDH65_02750 PF10150 Ribonuclease E/G family LDH65_02755 PF02545 Maf-like protein LDH65_02760 PF04093 rod shape-determining protein MreD LDH65_02765 PF04085 rod shape-determining protein MreC LDH65_02775 PF17157 Gammaproteobacterial periplasmic sensor domain LDH65_02775 PF00563 EAL domain LDH65_02775 PF00990 Diguanylate cyclase, GGDEF domain LDH65_02780 PF00107 Zinc-binding dehydrogenase LDH65_02780 PF08240 Alcohol dehydrogenase GroES-like domain LDH65_02785 PF00174 Oxidoreductase molybdopterin binding domain LDH65_02790 PF01794 Ferric reductase like transmembrane component LDH65_02795 PF01220 Dehydroquinase class II LDH65_02800 PF00364 Biotin-requiring enzyme LDH65_02805 PF00289 Biotin carboxylase, N-terminal domain LDH65_02805 PF02785 Biotin carboxylase C-terminal domain LDH65_02805 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain LDH65_02815 PF06196 Protein of unknown function (DUF997) LDH65_02820 PF00474 Sodium:solute symporter family LDH65_02830 PF01207 Dihydrouridine synthase (Dus) LDH65_02835 PF02954 Bacterial regulatory protein, Fis family LDH65_02860 PF07690 Major Facilitator Superfamily LDH65_02865 PF02627 Carboxymuconolactone decarboxylase family LDH65_02870 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase LDH65_02870 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase LDH65_02875 PF00753 Metallo-beta-lactamase superfamily LDH65_02880 PF05433 Glycine zipper 2TM domain LDH65_02885 PF00313 'Cold-shock' DNA-binding domain LDH65_02890 PF00313 'Cold-shock' DNA-binding domain LDH65_02910 PF02798 Glutathione S-transferase, N-terminal domain LDH65_02915 PF00571 CBS domain LDH65_02915 PF01380 SIS domain LDH65_02920 PF02782 FGGY family of carbohydrate kinases, C-terminal domain LDH65_02920 PF00370 FGGY family of carbohydrate kinases, N-terminal domain LDH65_02930 PF02653 Branched-chain amino acid transport system / permease component LDH65_02935 PF00005 ABC transporter LDH65_02945 PF03279 Bacterial lipid A biosynthesis acyltransferase LDH65_02955 PF00999 Sodium/hydrogen exchanger family LDH65_02960 PF00860 Permease family LDH65_02965 PF04221 RelB antitoxin LDH65_02980 PF00005 ABC transporter LDH65_02985 PF00528 Binding-protein-dependent transport system inner membrane component LDH65_02990 PF00296 Luciferase-like monooxygenase LDH65_02995 PF09084 NMT1/THI5 like LDH65_03000 PF03358 NADPH-dependent FMN reductase LDH65_03005 PF01791 DeoC/LacD family aldolase LDH65_03010 PF00294 pfkB family carbohydrate kinase LDH65_03015 PF05025 RbsD / FucU transport protein family LDH65_03020 PF12833 Helix-turn-helix domain LDH65_03020 PF02311 AraC-like ligand binding domain LDH65_03025 PF02894 Oxidoreductase family, C-terminal alpha/beta domain LDH65_03025 PF01408 Oxidoreductase family, NAD-binding Rossmann fold LDH65_03045 PF05593 RHS Repeat LDH65_03045 PF03527 RHS protein LDH65_03055 PF04717 Type VI secretion system, phage-baseplate injector LDH65_03085 PF03527 RHS protein LDH65_03085 PF05593 RHS Repeat LDH65_03100 PF04717 Type VI secretion system, phage-baseplate injector LDH65_03135 PF17871 AAA lid domain LDH65_03135 PF07724 AAA domain (Cdc48 subfamily) LDH65_03135 PF00004 ATPase family associated with various cellular activities (AAA) LDH65_03135 PF10431 C-terminal, D2-small domain, of ClpB protein LDH65_03145 PF05936 Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE LDH65_03165 PF05947 Type VI secretion system, TssF LDH65_03175 PF03725 3' exoribonuclease family, domain 2 LDH65_03175 PF01138 3' exoribonuclease family, domain 1 LDH65_03175 PF00575 S1 RNA binding domain LDH65_03175 PF00013 KH domain LDH65_03175 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain LDH65_03180 PF07719 Tetratricopeptide repeat LDH65_03180 PF13181 Tetratricopeptide repeat LDH65_03190 PF12343 Cold shock protein DEAD box A LDH65_03190 PF00271 Helicase conserved C-terminal domain LDH65_03190 PF03880 DbpA RNA binding domain LDH65_03190 PF00270 DEAD/DEAH box helicase LDH65_03200 PF01381 Helix-turn-helix LDH65_03210 PF00296 Luciferase-like monooxygenase LDH65_03215 PF00529 HlyD membrane-fusion protein of T1SS LDH65_03215 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LDH65_03220 PF00873 AcrB/AcrD/AcrF family LDH65_03225 PF08139 Prokaryotic membrane lipoprotein lipid attachment site LDH65_03225 PF02321 Outer membrane efflux protein LDH65_03230 PF01136 Peptidase family U32 LDH65_03235 PF01136 Peptidase family U32 LDH65_03240 PF02036 SCP-2 sterol transfer family LDH65_03245 PF13508 Acetyltransferase (GNAT) domain LDH65_03250 PF01541 GIY-YIG catalytic domain LDH65_03265 PF13416 Bacterial extracellular solute-binding protein LDH65_03270 PF00528 Binding-protein-dependent transport system inner membrane component LDH65_03275 PF00528 Binding-protein-dependent transport system inner membrane component LDH65_03280 PF17912 MalK OB fold domain LDH65_03280 PF03459 TOBE domain LDH65_03280 PF00005 ABC transporter LDH65_03295 PF13460 NAD(P)H-binding LDH65_03300 PF12706 Beta-lactamase superfamily domain LDH65_03310 PF07969 Amidohydrolase family LDH65_03315 PF00005 ABC transporter LDH65_03320 PF00005 ABC transporter LDH65_03325 PF06007 Phosphonate metabolism protein PhnJ LDH65_03330 PF05861 Bacterial phosphonate metabolism protein (PhnI) LDH65_03335 PF05845 Bacterial phosphonate metabolism protein (PhnH) LDH65_03340 PF06754 Phosphonate metabolism protein PhnG LDH65_03345 PF07702 UTRA domain LDH65_03345 PF00392 Bacterial regulatory proteins, gntR family LDH65_03355 PF13597 Anaerobic ribonucleoside-triphosphate reductase LDH65_03355 PF03477 ATP cone domain LDH65_03360 PF08352 Oligopeptide/dipeptide transporter, C-terminal region LDH65_03360 PF00005 ABC transporter LDH65_03365 PF00005 ABC transporter LDH65_03365 PF08352 Oligopeptide/dipeptide transporter, C-terminal region LDH65_03370 PF12911 N-terminal TM domain of oligopeptide transport permease C LDH65_03370 PF00528 Binding-protein-dependent transport system inner membrane component LDH65_03375 PF00528 Binding-protein-dependent transport system inner membrane component LDH65_03385 PF04074 YhcH/YjgK/YiaL LDH65_03390 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain LDH65_03390 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain LDH65_03395 PF06877 Regulator of ribonuclease activity B LDH65_03400 PF00583 Acetyltransferase (GNAT) family LDH65_03405 PF10458 Valyl tRNA synthetase tRNA binding arm LDH65_03405 PF08264 Anticodon-binding domain of tRNA LDH65_03405 PF00133 tRNA synthetases class I (I, L, M and V) LDH65_03410 PF04364 DNA polymerase III chi subunit, HolC LDH65_03415 PF02789 Cytosol aminopeptidase family, N-terminal domain LDH65_03415 PF00883 Cytosol aminopeptidase family, catalytic domain LDH65_03420 PF03739 Lipopolysaccharide export system permease LptF/LptG LDH65_03425 PF03739 Lipopolysaccharide export system permease LptF/LptG LDH65_03435 PF13356 Arm DNA-binding domain LDH65_03435 PF00589 Phage integrase family LDH65_03445 PF08676 MutL C terminal dimerisation domain LDH65_03445 PF01119 DNA mismatch repair protein, C-terminal domain LDH65_03450 PF01695 IstB-like ATP binding protein LDH65_03455 PF02796 Helix-turn-helix domain of resolvase LDH65_03455 PF00665 Integrase core domain LDH65_03465 PF03884 DNA gyrase inhibitor YacG LDH65_03470 PF07072 Cell division protein LDH65_03475 PF01121 Dephospho-CoA kinase LDH65_03485 PF00478 IMP dehydrogenase / GMP reductase domain LDH65_03490 PF00482 Type II secretion system (T2SS), protein F LDH65_03495 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain LDH65_03495 PF00437 Type II/IV secretion system protein LDH65_03500 PF07963 Prokaryotic N-terminal methylation motif LDH65_03505 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain LDH65_03505 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain LDH65_03510 PF01510 N-acetylmuramoyl-L-alanine amidase LDH65_03515 PF17113 Regulatory signalling modulator protein AmpE LDH65_03520 PF00324 Amino acid permease LDH65_03525 PF07729 FCD domain LDH65_03525 PF00392 Bacterial regulatory proteins, gntR family LDH65_03530 PF17831 Pyruvate dehydrogenase E1 component middle domain LDH65_03530 PF00456 Transketolase, thiamine diphosphate binding domain LDH65_03535 PF00364 Biotin-requiring enzyme LDH65_03535 PF02817 e3 binding domain LDH65_03535 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) LDH65_03540 PF07992 Pyridine nucleotide-disulphide oxidoreductase LDH65_03540 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain LDH65_03545 PF01797 Transposase IS200 like LDH65_03550 PF00330 Aconitase family (aconitate hydratase) LDH65_03550 PF06434 Aconitate hydratase 2 N-terminus LDH65_03550 PF11791 Aconitate B N-terminal domain LDH65_03555 PF06062 Uncharacterised protein family (UPF0231) LDH65_03560 PF00892 EamA-like transporter family LDH65_03565 PF02675 S-adenosylmethionine decarboxylase LDH65_03570 PF17284 Spermidine synthase tetramerisation domain LDH65_03575 PF09691 Type II secretion system pilotin lipoprotein (PulS_OutS) LDH65_03580 PF00394 Multicopper oxidase LDH65_03580 PF07732 Multicopper oxidase LDH65_03580 PF07731 Multicopper oxidase LDH65_03580 PF10518 TAT (twin-arginine translocation) pathway signal sequence LDH65_03585 PF00156 Phosphoribosyl transferase domain LDH65_03590 PF00484 Carbonic anhydrase LDH65_03595 PF00005 ABC transporter LDH65_03600 PF01061 ABC-2 type transporter LDH65_03610 PF02261 Aspartate decarboxylase LDH65_03615 PF02569 Pantoate-beta-alanine ligase LDH65_03620 PF02548 Ketopantoate hydroxymethyltransferase LDH65_03625 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) LDH65_03630 PF12626 Polymerase A arginine-rich C-terminus LDH65_03630 PF01743 Poly A polymerase head domain LDH65_03630 PF12627 Probable RNA and SrmB- binding site of polymerase A LDH65_03635 PF00749 tRNA synthetases class I (E and Q), catalytic domain LDH65_03640 PF01258 Prokaryotic dksA/traR C4-type zinc finger LDH65_03645 PF03749 Sugar fermentation stimulation protein RE domain LDH65_03645 PF17746 SfsA N-terminal OB domain LDH65_03650 PF02834 LigT like Phosphoesterase LDH65_03655 PF00270 DEAD/DEAH box helicase LDH65_03655 PF04408 Helicase associated domain (HA2) LDH65_03655 PF00271 Helicase conserved C-terminal domain LDH65_03655 PF08482 ATP-dependent helicase C-terminal LDH65_03660 PF00905 Penicillin binding protein transpeptidase domain LDH65_03660 PF00912 Transglycosylase LDH65_03660 PF14812 Transmembrane domain of transglycosylase PBP1 at N-terminal LDH65_03660 PF14814 Bifunctional transglycosylase second domain LDH65_03665 PF00005 ABC transporter LDH65_03675 PF01497 Periplasmic binding protein LDH65_03680 PF01032 FecCD transport family LDH65_03685 PF00202 Aminotransferase class-III LDH65_03690 PF00654 Voltage gated chloride channel LDH65_03695 PF01521 Iron-sulphur cluster biosynthesis LDH65_03700 PF03458 UPF0126 domain LDH65_03705 PF01497 Periplasmic binding protein LDH65_03710 PF01048 Phosphorylase superfamily LDH65_03715 PF01966 HD domain LDH65_03715 PF13286 Phosphohydrolase-associated domain LDH65_03720 PF00595 PDZ domain LDH65_03725 PF00512 His Kinase A (phospho-acceptor) domain LDH65_03725 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) LDH65_03725 PF00072 Response regulator receiver domain LDH65_03725 PF01627 Hpt domain LDH65_03725 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LDH65_03725 PF00672 HAMP domain LDH65_03735 PF01938 TRAM domain LDH65_03735 PF05958 tRNA (Uracil-5-)-methyltransferase LDH65_03740 PF13291 ACT domain LDH65_03740 PF04607 Region found in RelA / SpoT proteins LDH65_03740 PF02824 TGS domain LDH65_03745 PF03819 MazG nucleotide pyrophosphohydrolase domain LDH65_03750 PF06418 CTP synthase N-terminus LDH65_03750 PF00117 Glutamine amidotransferase class-I LDH65_03755 PF00113 Enolase, C-terminal TIM barrel domain LDH65_03755 PF03952 Enolase, N-terminal domain LDH65_03760 PF00080 Copper/zinc superoxide dismutase (SODC) LDH65_03765 PF04055 Radical SAM superfamily LDH65_03770 PF01242 6-pyruvoyl tetrahydropterin synthase LDH65_03775 PF00667 FAD binding domain LDH65_03775 PF00175 Oxidoreductase NAD-binding domain LDH65_03775 PF00258 Flavodoxin LDH65_03780 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain LDH65_03780 PF01077 Nitrite and sulphite reductase 4Fe-4S domain LDH65_03810 PF10414 Sirohaem synthase dimerisation region LDH65_03810 PF14824 Sirohaem biosynthesis protein central LDH65_03810 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases LDH65_03815 PF01507 Phosphoadenosine phosphosulfate reductase family LDH65_03820 PF00009 Elongation factor Tu GTP binding domain LDH65_03830 PF12084 Protein of unknown function (DUF3561) LDH65_03835 PF04977 Septum formation initiator LDH65_03840 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase LDH65_03845 PF02542 YgbB family LDH65_03850 PF01142 tRNA pseudouridine synthase D (TruD) LDH65_03855 PF01975 Survival protein SurE LDH65_03865 PF01476 LysM domain LDH65_03865 PF01551 Peptidase family M23 LDH65_03870 PF04539 Sigma-70 region 3 LDH65_03870 PF04545 Sigma-70, region 4 LDH65_03870 PF04542 Sigma-70 region 2 LDH65_03870 PF00140 Sigma-70 factor, region 1.2 LDH65_03875 PF00488 MutS domain V LDH65_03875 PF01624 MutS domain I LDH65_03875 PF05188 MutS domain II LDH65_03875 PF05192 MutS domain III LDH65_03875 PF05190 MutS family domain IV LDH65_03880 PF02502 Ribose/Galactose Isomerase LDH65_03885 PF08240 Alcohol dehydrogenase GroES-like domain LDH65_03885 PF00107 Zinc-binding dehydrogenase LDH65_03900 PF02734 DAK2 domain LDH65_03905 PF13936 Helix-turn-helix domain LDH65_03905 PF04198 Putative sugar-binding domain LDH65_03910 PF02040 Arsenical pump membrane protein LDH65_03915 PF01022 Bacterial regulatory protein, arsR family LDH65_03930 PF00497 Bacterial extracellular solute-binding proteins, family 3 LDH65_03935 PF14376 Haem-binding domain LDH65_03935 PF03150 Di-haem cytochrome c peroxidase LDH65_03935 PF00034 Cytochrome c LDH65_03955 PF00557 Metallopeptidase family M24 LDH65_03965 PF05683 Fumarase C-terminus LDH65_03965 PF05681 Fumarate hydratase (Fumerase) LDH65_03970 PF02782 FGGY family of carbohydrate kinases, C-terminal domain LDH65_03970 PF00370 FGGY family of carbohydrate kinases, N-terminal domain LDH65_03975 PF01261 Xylose isomerase-like TIM barrel LDH65_03980 PF02653 Branched-chain amino acid transport system / permease component LDH65_03985 PF02653 Branched-chain amino acid transport system / permease component LDH65_03990 PF00005 ABC transporter LDH65_03995 PF01797 Transposase IS200 like LDH65_04005 PF08220 DeoR-like helix-turn-helix domain LDH65_04005 PF00455 DeoR C terminal sensor domain LDH65_04010 PF00596 Class II Aldolase and Adducin N-terminal domain LDH65_04015 PF00384 Molybdopterin oxidoreductase LDH65_04015 PF04879 Molybdopterin oxidoreductase Fe4S4 domain LDH65_04015 PF01568 Molydopterin dinucleotide binding domain LDH65_04020 PF13247 4Fe-4S dicluster domain LDH65_04020 PF12800 4Fe-4S binding domain LDH65_04025 PF04976 DMSO reductase anchor subunit (DmsC) LDH65_04030 PF02613 Nitrate reductase delta subunit LDH65_04035 PF01292 Prokaryotic cytochrome b561 LDH65_04040 PF07361 Cytochrome b562 LDH65_04045 PF00141 Peroxidase LDH65_04050 PF13407 Periplasmic binding protein domain LDH65_04060 PF00005 ABC transporter LDH65_04065 PF02653 Branched-chain amino acid transport system / permease component LDH65_04070 PF00456 Transketolase, thiamine diphosphate binding domain LDH65_04075 PF02779 Transketolase, pyrimidine binding domain LDH65_04075 PF02780 Transketolase, C-terminal domain LDH65_04080 PF02782 FGGY family of carbohydrate kinases, C-terminal domain LDH65_04080 PF00370 FGGY family of carbohydrate kinases, N-terminal domain LDH65_04095 PF07690 Major Facilitator Superfamily LDH65_04100 PF02464 Competence-damaged protein LDH65_04105 PF00154 recA bacterial DNA recombination protein LDH65_04110 PF02631 RecX family LDH65_04115 PF02272 DHHA1 domain LDH65_04115 PF01411 tRNA synthetases class II (A) LDH65_04115 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain LDH65_04120 PF02599 Global regulator protein family LDH65_04150 PF13419 Haloacid dehalogenase-like hydrolase LDH65_04155 PF09335 SNARE associated Golgi protein LDH65_04160 PF04262 Glutamate-cysteine ligase LDH65_04165 PF02664 S-Ribosylhomocysteinase (LuxS) LDH65_04170 PF01797 Transposase IS200 like LDH65_04180 PF03471 Transporter associated domain LDH65_04180 PF00571 CBS domain LDH65_04180 PF01595 Cyclin M transmembrane N-terminal domain LDH65_04185 PF01578 Cytochrome C assembly protein LDH65_04190 PF00448 SRP54-type protein, GTPase domain LDH65_04190 PF02881 SRP54-type protein, helical bundle domain LDH65_04190 PF02978 Signal peptide binding domain LDH65_04195 PF00886 Ribosomal protein S16 LDH65_04200 PF01782 RimM N-terminal domain LDH65_04200 PF05239 PRC-barrel domain LDH65_04205 PF01746 tRNA (Guanine-1)-methyltransferase LDH65_04210 PF01245 Ribosomal protein L19 LDH65_04220 PF04338 Protein of unknown function, DUF481 LDH65_04230 PF00072 Response regulator receiver domain LDH65_04230 PF04397 LytTr DNA-binding domain LDH65_04235 PF00793 DAHP synthetase I family LDH65_04240 PF01817 Chorismate mutase type II LDH65_04240 PF02153 Prephenate dehydrogenase LDH65_04250 PF01695 IstB-like ATP binding protein LDH65_04255 PF00665 Integrase core domain LDH65_04255 PF02796 Helix-turn-helix domain of resolvase LDH65_04265 PF01797 Transposase IS200 like LDH65_04270 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein LDH65_04275 PF13525 Outer membrane lipoprotein LDH65_04280 PF00849 RNA pseudouridylate synthase LDH65_04280 PF01479 S4 domain LDH65_04285 PF02578 Multi-copper polyphenol oxidoreductase laccase LDH65_04290 PF10431 C-terminal, D2-small domain, of ClpB protein LDH65_04290 PF07724 AAA domain (Cdc48 subfamily) LDH65_04290 PF00004 ATPase family associated with various cellular activities (AAA) LDH65_04290 PF02861 Clp amino terminal domain, pathogenicity island component LDH65_04290 PF17871 AAA lid domain LDH65_04320 PF10043 Predicted periplasmic lipoprotein (DUF2279) LDH65_04325 PF13091 PLD-like domain LDH65_04330 PF00583 Acetyltransferase (GNAT) family LDH65_04330 PF13380 CoA binding domain LDH65_04330 PF13607 Succinyl-CoA ligase like flavodoxin domain LDH65_04335 PF03942 DTW domain LDH65_04340 PF00085 Thioredoxin LDH65_04345 PF00588 SpoU rRNA Methylase family LDH65_04345 PF08032 RNA 2'-O ribose methyltransferase substrate binding LDH65_04350 PF07690 Major Facilitator Superfamily LDH65_04355 PF00529 HlyD membrane-fusion protein of T1SS LDH65_04355 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LDH65_04360 PF01047 MarR family LDH65_04365 PF05437 Branched-chain amino acid transport protein (AzlD) LDH65_04370 PF03591 AzlC protein LDH65_04375 PF07690 Major Facilitator Superfamily LDH65_04385 PF01425 Amidase LDH65_04400 PF00497 Bacterial extracellular solute-binding proteins, family 3 LDH65_04405 PF00528 Binding-protein-dependent transport system inner membrane component LDH65_04410 PF00528 Binding-protein-dependent transport system inner membrane component LDH65_04415 PF00005 ABC transporter LDH65_04425 PF01695 IstB-like ATP binding protein LDH65_04430 PF02796 Helix-turn-helix domain of resolvase LDH65_04430 PF00665 Integrase core domain LDH65_04435 PF00266 Aminotransferase class-V LDH65_04440 PF07687 Peptidase dimerisation domain LDH65_04440 PF01546 Peptidase family M20/M25/M40 LDH65_04450 PF08479 POTRA domain, ShlB-type LDH65_04450 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB LDH65_04455 PF05860 haemagglutination activity domain LDH65_04460 PF18071 HMW1C N-terminal LDH65_04460 PF18254 HMW1 domain 2 LDH65_04470 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LDH65_04470 PF00441 Acyl-CoA dehydrogenase, C-terminal domain LDH65_04470 PF09317 Domain of unknown function (DUF1974) LDH65_04475 PF13580 SIS domain LDH65_04480 PF13230 Glutamine amidotransferases class-II LDH65_04485 PF03734 L,D-transpeptidase catalytic domain LDH65_04495 PF05896 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) LDH65_04495 PF11973 NQRA C-terminal domain LDH65_04500 PF03116 NQR2, RnfD, RnfE family LDH65_04505 PF04205 FMN-binding domain LDH65_04510 PF02508 Rnf-Nqr subunit, membrane protein LDH65_04515 PF02508 Rnf-Nqr subunit, membrane protein LDH65_04520 PF00175 Oxidoreductase NAD-binding domain LDH65_04520 PF00970 Oxidoreductase FAD-binding domain LDH65_04520 PF00111 2Fe-2S iron-sulfur cluster binding domain LDH65_04525 PF02424 ApbE family LDH65_04535 PF03009 Glycerophosphoryl diester phosphodiesterase family LDH65_04540 PF00817 impB/mucB/samB family LDH65_04540 PF11799 impB/mucB/samB family C-terminal domain LDH65_04540 PF11798 IMS family HHH motif LDH65_04545 PF07687 Peptidase dimerisation domain LDH65_04545 PF01546 Peptidase family M20/M25/M40 LDH65_04550 PF03466 LysR substrate binding domain LDH65_04550 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LDH65_04565 PF00156 Phosphoribosyl transferase domain LDH65_04570 PF06500 Alpha/beta hydrolase of unknown function (DUF1100) LDH65_04575 PF07417 Sigma factor-binding transcriptional regulator Crl LDH65_04580 PF00696 Amino acid kinase family LDH65_04580 PF01472 PUA domain LDH65_04585 PF00171 Aldehyde dehydrogenase family LDH65_04590 PF07238 PilZ domain LDH65_04590 PF07317 Flagellar regulator YcgR LDH65_04610 PF01202 Shikimate kinase LDH65_04615 PF06865 Pyrimidine/purine nucleoside phosphorylase LDH65_04620 PF04381 Putative exonuclease, RdgC LDH65_04625 PF00480 ROK family LDH65_04630 PF13476 AAA domain LDH65_04635 PF00149 Calcineurin-like phosphoesterase LDH65_04635 PF12320 Type 5 capsule protein repressor C-terminal domain LDH65_04640 PF00072 Response regulator receiver domain LDH65_04640 PF00486 Transcriptional regulatory protein, C terminal LDH65_04645 PF00512 His Kinase A (phospho-acceptor) domain LDH65_04645 PF00989 PAS fold LDH65_04645 PF11808 Phosphate regulon sensor protein PhoR LDH65_04645 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LDH65_04650 PF12849 PBP superfamily domain LDH65_04655 PF05525 Branched-chain amino acid transport protein LDH65_04660 PF00324 Amino acid permease LDH65_04665 PF00128 Alpha amylase, catalytic domain LDH65_04665 PF02903 Alpha amylase, N-terminal ig-like domain LDH65_04685 PF10417 C-terminal domain of 1-Cys peroxiredoxin LDH65_04685 PF00578 AhpC/TSA family LDH65_04690 PF04336 Acyl carrier protein phosphodiesterase LDH65_04695 PF02547 Queuosine biosynthesis protein LDH65_04700 PF01702 Queuine tRNA-ribosyltransferase LDH65_04705 PF02699 Preprotein translocase subunit LDH65_04710 PF13721 SecD export protein N-terminal TM region LDH65_04710 PF02355 Protein export membrane protein LDH65_04710 PF07549 SecD/SecF GG Motif LDH65_04715 PF07549 SecD/SecF GG Motif LDH65_04715 PF02355 Protein export membrane protein LDH65_04735 PF03477 ATP cone domain LDH65_04740 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region LDH65_04740 PF01872 RibD C-terminal domain LDH65_04745 PF00885 6,7-dimethyl-8-ribityllumazine synthase LDH65_04750 PF01029 NusB family LDH65_04755 PF00586 AIR synthase related protein, N-terminal domain LDH65_04755 PF02769 AIR synthase related protein, C-terminal domain LDH65_04760 PF04608 Phosphatidylglycerophosphatase A LDH65_04770 PF02780 Transketolase, C-terminal domain LDH65_04770 PF02779 Transketolase, pyrimidine binding domain LDH65_04770 PF13292 1-deoxy-D-xylulose-5-phosphate synthase LDH65_04775 PF00348 Polyprenyl synthetase LDH65_04780 PF02609 Exonuclease VII small subunit LDH65_04785 PF02926 THUMP domain LDH65_04785 PF02568 Thiamine biosynthesis protein (ThiI) LDH65_04790 PF01965 DJ-1/PfpI family LDH65_04795 PF02558 Ketopantoate reductase PanE/ApbA LDH65_04795 PF08546 Ketopantoate reductase PanE/ApbA C terminal LDH65_04800 PF04461 Protein of unknown function (DUF520) LDH65_04805 PF07690 Major Facilitator Superfamily LDH65_04810 PF01040 UbiA prenyltransferase family LDH65_04815 PF03626 Prokaryotic Cytochrome C oxidase subunit IV LDH65_04820 PF00510 Cytochrome c oxidase subunit III LDH65_04825 PF00115 Cytochrome C and Quinol oxidase polypeptide I LDH65_04830 PF00116 Cytochrome C oxidase subunit II, periplasmic domain LDH65_04830 PF06481 COX Aromatic Rich Motif LDH65_04835 PF03502 Nucleoside-specific channel-forming protein, Tsx LDH65_04840 PF07690 Major Facilitator Superfamily LDH65_04845 PF03923 Uncharacterized lipoprotein LDH65_04845 PF08139 Prokaryotic membrane lipoprotein lipid attachment site LDH65_04850 PF01722 BolA-like protein LDH65_04855 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase LDH65_04855 PF05698 Bacterial trigger factor protein (TF) C-terminus LDH65_04855 PF05697 Bacterial trigger factor protein (TF) LDH65_04860 PF00574 Clp protease LDH65_04865 PF06689 ClpX C4-type zinc finger LDH65_04865 PF07724 AAA domain (Cdc48 subfamily) LDH65_04865 PF10431 C-terminal, D2-small domain, of ClpB protein LDH65_04870 PF00004 ATPase family associated with various cellular activities (AAA) LDH65_04870 PF02190 ATP-dependent protease La (LON) substrate-binding domain LDH65_04870 PF05362 Lon protease (S16) C-terminal proteolytic domain LDH65_04875 PF00216 Bacterial DNA-binding protein LDH65_04880 PF13145 PPIC-type PPIASE domain LDH65_04895 PF06508 Queuosine biosynthesis protein QueC LDH65_04900 PF01695 IstB-like ATP binding protein LDH65_04905 PF00665 Integrase core domain LDH65_04905 PF02796 Helix-turn-helix domain of resolvase LDH65_04920 PF00291 Pyridoxal-phosphate dependent enzyme LDH65_04925 PF01037 Lrp/AsnC ligand binding domain LDH65_04925 PF13404 AsnC-type helix-turn-helix domain LDH65_04930 PF00664 ABC transporter transmembrane region LDH65_04930 PF00005 ABC transporter LDH65_04935 PF00005 ABC transporter LDH65_04935 PF00664 ABC transporter transmembrane region LDH65_04940 PF00543 Nitrogen regulatory protein P-II LDH65_04945 PF00909 Ammonium Transporter Family LDH65_04955 PF09619 Type III secretion system lipoprotein chaperone (YscW) LDH65_04960 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain LDH65_04970 PF05321 Haemolysin expression modulating protein LDH65_04975 PF10757 Biofilm formation regulator YbaJ LDH65_04985 PF00444 Ribosomal protein L36 LDH65_04990 PF01197 Ribosomal protein L31 LDH65_04995 PF00873 AcrB/AcrD/AcrF family LDH65_05000 PF00529 HlyD membrane-fusion protein of T1SS LDH65_05000 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LDH65_05005 PF00440 Bacterial regulatory proteins, tetR family LDH65_05005 PF08361 MAATS-type transcriptional repressor, C-terminal region LDH65_05010 PF02635 DsrE/DsrF-like family LDH65_05015 PF00924 Mechanosensitive ion channel LDH65_05015 PF12795 Mechanosensitive ion channel porin domain LDH65_05015 PF12794 Mechanosensitive ion channel inner membrane domain 1 LDH65_05020 PF10689 Protein of unknown function (DUF2496) LDH65_05030 PF04304 Protein of unknown function (DUF454) LDH65_05035 PF00156 Phosphoribosyl transferase domain LDH65_05040 PF12170 DNA polymerase III tau subunit V interacting with alpha LDH65_05040 PF12169 DNA polymerase III subunits gamma and tau domain III LDH65_05040 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding LDH65_05045 PF02575 YbaB/EbfC DNA-binding family LDH65_05050 PF13662 Toprim domain LDH65_05050 PF02132 RecR protein LDH65_05055 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LDH65_05055 PF00183 Hsp90 protein LDH65_05060 PF05191 Adenylate kinase, active site lid LDH65_05065 PF00762 Ferrochelatase LDH65_05070 PF00970 Oxidoreductase FAD-binding domain LDH65_05070 PF00111 2Fe-2S iron-sulfur cluster binding domain LDH65_05070 PF00175 Oxidoreductase NAD-binding domain LDH65_05075 PF00483 Nucleotidyl transferase LDH65_05080 PF16363 GDP-mannose 4,6 dehydratase LDH65_05085 PF16363 GDP-mannose 4,6 dehydratase LDH65_05090 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family LDH65_05095 PF01370 NAD dependent epimerase/dehydratase family LDH65_05125 PF00534 Glycosyl transferases group 1 LDH65_05125 PF13439 Glycosyltransferase Family 4 LDH65_05135 PF01370 NAD dependent epimerase/dehydratase family LDH65_05140 PF01050 Mannose-6-phosphate isomerase LDH65_05140 PF00483 Nucleotidyl transferase LDH65_05145 PF00535 Glycosyl transferase family 2 LDH65_05150 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I LDH65_05150 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II LDH65_05150 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III LDH65_05150 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain LDH65_05155 PF02706 Chain length determinant protein LDH65_05160 PF00294 pfkB family carbohydrate kinase LDH65_05165 PF00999 Sodium/hydrogen exchanger family LDH65_05165 PF02254 TrkA-N domain LDH65_05170 PF07690 Major Facilitator Superfamily LDH65_05175 PF02872 5'-nucleotidase, C-terminal domain LDH65_05175 PF00149 Calcineurin-like phosphoesterase LDH65_05180 PF00149 Calcineurin-like phosphoesterase LDH65_05180 PF02872 5'-nucleotidase, C-terminal domain LDH65_05185 PF00149 Calcineurin-like phosphoesterase LDH65_05185 PF02872 5'-nucleotidase, C-terminal domain LDH65_05200 PF04073 Aminoacyl-tRNA editing domain LDH65_05205 PF01963 TraB family LDH65_05210 PF00403 Heavy-metal-associated domain LDH65_05215 PF13411 MerR HTH family regulatory protein LDH65_05220 PF01957 NfeD-like C-terminal, partner-binding LDH65_05225 PF01145 SPFH domain / Band 7 family LDH65_05225 PF16200 C-terminal region of band_7 LDH65_05230 PF00085 Thioredoxin LDH65_05235 PF00106 short chain dehydrogenase LDH65_05240 PF13472 GDSL-like Lipase/Acylhydrolase family LDH65_05245 PF00005 ABC transporter LDH65_05255 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain LDH65_05255 PF02222 ATP-grasp domain LDH65_05260 PF00731 AIR carboxylase LDH65_05265 PF00149 Calcineurin-like phosphoesterase LDH65_05270 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD LDH65_05275 PF09190 DALR domain LDH65_05275 PF01406 tRNA synthetases class I (C) catalytic domain LDH65_05280 PF01797 Transposase IS200 like LDH65_05285 PF00308 Bacterial dnaA protein LDH65_05290 PF03960 ArsC family LDH65_05295 PF01435 Peptidase family M48 LDH65_05295 PF07720 Tetratricopeptide repeat LDH65_05310 PF00578 AhpC/TSA family LDH65_05315 PF01842 ACT domain LDH65_05320 PF00701 Dihydrodipicolinate synthetase family LDH65_05325 PF06804 NlpB/DapX lipoprotein LDH65_05330 PF01797 Transposase IS200 like LDH65_05335 PF01259 SAICAR synthetase LDH65_05340 PF04228 Putative neutral zinc metallopeptidase LDH65_05345 PF04284 Protein of unknown function (DUF441) LDH65_05350 PF08351 Domain of unknown function (DUF1726) LDH65_05350 PF05127 Helicase LDH65_05350 PF13718 GNAT acetyltransferase 2 LDH65_05350 PF17176 tRNA-binding domain LDH65_05360 PF13980 Uncharacterised protein family (UPF0370) LDH65_05365 PF02557 D-alanyl-D-alanine carboxypeptidase LDH65_05370 PF07687 Peptidase dimerisation domain LDH65_05370 PF01546 Peptidase family M20/M25/M40 LDH65_05375 PF03960 ArsC family LDH65_05390 PF00528 Binding-protein-dependent transport system inner membrane component LDH65_05395 PF00005 ABC transporter LDH65_05395 PF08402 TOBE domain LDH65_05405 PF00884 Sulfatase LDH65_05410 PF13186 Iron-sulfur cluster-binding domain LDH65_05410 PF04055 Radical SAM superfamily LDH65_05415 PF04307 LexA-binding, inner membrane-associated putative hydrolase LDH65_05425 PF00873 AcrB/AcrD/AcrF family LDH65_05435 PF00196 Bacterial regulatory proteins, luxR family LDH65_05435 PF00072 Response regulator receiver domain LDH65_05440 PF00037 4Fe-4S binding domain LDH65_05440 PF12800 4Fe-4S binding domain LDH65_05440 PF13187 4Fe-4S dicluster domain LDH65_05445 PF03927 NapD protein LDH65_05450 PF04879 Molybdopterin oxidoreductase Fe4S4 domain LDH65_05450 PF00384 Molybdopterin oxidoreductase LDH65_05450 PF01568 Molydopterin dinucleotide binding domain LDH65_05450 PF10518 TAT (twin-arginine translocation) pathway signal sequence LDH65_05455 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) LDH65_05460 PF03264 NapC/NirT cytochrome c family, N-terminal region LDH65_05465 PF00293 NUDIX domain LDH65_05470 PF01515 Phosphate acetyl/butaryl transferase LDH65_05470 PF00390 Malic enzyme, N-terminal domain LDH65_05470 PF03949 Malic enzyme, NAD binding domain LDH65_05475 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 LDH65_05480 PF01218 Coproporphyrinogen III oxidase LDH65_05485 PF00583 Acetyltransferase (GNAT) family LDH65_05495 PF16168 Adhesin of bacterial autotransporter system, probable stalk LDH65_05495 PF03797 Autotransporter beta-domain LDH65_05495 PF13018 Extended Signal Peptide of Type V secretion system LDH65_05495 PF03212 Pertactin LDH65_05500 PF04076 Bacterial OB fold (BOF) protein LDH65_05505 PF06572 Protein of unknown function (DUF1131) LDH65_05510 PF04261 Dyp-type peroxidase family LDH65_05515 PF00701 Dihydrodipicolinate synthetase family LDH65_05520 PF04131 Putative N-acetylmannosamine-6-phosphate epimerase LDH65_05530 PF12468 Type III secretion system leucine rich repeat protein LDH65_05535 PF00480 ROK family LDH65_05540 PF04074 YhcH/YjgK/YiaL LDH65_05545 PF01418 Helix-turn-helix domain, rpiR family LDH65_05545 PF01380 SIS domain LDH65_05550 PF07690 Major Facilitator Superfamily LDH65_05560 PF00528 Binding-protein-dependent transport system inner membrane component LDH65_05565 PF00528 Binding-protein-dependent transport system inner membrane component LDH65_05570 PF00005 ABC transporter LDH65_05575 PF00291 Pyridoxal-phosphate dependent enzyme LDH65_05590 PF00072 Response regulator receiver domain LDH65_05590 PF00486 Transcriptional regulatory protein, C terminal LDH65_05595 PF00672 HAMP domain LDH65_05595 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LDH65_05595 PF00512 His Kinase A (phospho-acceptor) domain LDH65_05605 PF00155 Aminotransferase class I and II LDH65_05620 PF00474 Sodium:solute symporter family LDH65_05625 PF07992 Pyridine nucleotide-disulphide oxidoreductase LDH65_05625 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain LDH65_05630 PF00005 ABC transporter LDH65_05630 PF02687 FtsX-like permease family LDH65_05630 PF12704 MacB-like periplasmic core domain LDH65_05635 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LDH65_05640 PF00072 Response regulator receiver domain LDH65_05640 PF00486 Transcriptional regulatory protein, C terminal LDH65_05645 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LDH65_05645 PF00672 HAMP domain LDH65_05645 PF16527 Two-component sensor protein CpxA, periplasmic domain LDH65_05645 PF00512 His Kinase A (phospho-acceptor) domain LDH65_05655 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 LDH65_05660 PF05524 PEP-utilising enzyme, N-terminal LDH65_05660 PF00391 PEP-utilising enzyme, mobile domain LDH65_05660 PF02896 PEP-utilising enzyme, TIM barrel domain LDH65_05665 PF00381 PTS HPr component phosphorylation site LDH65_05670 PF00291 Pyridoxal-phosphate dependent enzyme LDH65_05680 PF04354 ZipA, C-terminal FtsZ-binding domain LDH65_05685 PF00533 BRCA1 C Terminus (BRCT) domain LDH65_05685 PF01653 NAD-dependent DNA ligase adenylation domain LDH65_05685 PF03120 NAD-dependent DNA ligase OB-fold domain LDH65_05685 PF03119 NAD-dependent DNA ligase C4 zinc finger domain LDH65_05685 PF12826 Helix-hairpin-helix motif LDH65_05690 PF12843 Putative quorum-sensing-regulated virulence factor LDH65_05715 PF01797 Transposase IS200 like LDH65_05720 PF00749 tRNA synthetases class I (E and Q), catalytic domain LDH65_05755 PF07670 Nucleoside recognition LDH65_05755 PF07662 Na+ dependent nucleoside transporter C-terminus LDH65_05755 PF01773 Na+ dependent nucleoside transporter N-terminus LDH65_05760 PF01566 Natural resistance-associated macrophage protein LDH65_05770 PF00248 Aldo/keto reductase family LDH65_05775 PF03466 LysR substrate binding domain LDH65_05775 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LDH65_05785 PF02685 Glucokinase LDH65_05790 PF07350 Protein of unknown function (DUF1479) LDH65_05795 PF00155 Aminotransferase class I and II LDH65_05800 PF01292 Prokaryotic cytochrome b561 LDH65_05810 PF03783 Curli production assembly/transport component CsgG LDH65_05820 PF05643 Putative bacterial lipoprotein (DUF799) LDH65_05830 PF02613 Nitrate reductase delta subunit LDH65_05835 PF04976 DMSO reductase anchor subunit (DmsC) LDH65_05840 PF12800 4Fe-4S binding domain LDH65_05840 PF13247 4Fe-4S dicluster domain LDH65_05845 PF01568 Molydopterin dinucleotide binding domain LDH65_05845 PF00384 Molybdopterin oxidoreductase LDH65_05845 PF04879 Molybdopterin oxidoreductase Fe4S4 domain LDH65_05855 PF05638 Type VI secretion system effector, Hcp LDH65_05865 PF00005 ABC transporter LDH65_05870 PF00528 Binding-protein-dependent transport system inner membrane component LDH65_05880 PF13406 Transglycosylase SLT domain LDH65_05925 PF05947 Type VI secretion system, TssF LDH65_05930 PF07724 AAA domain (Cdc48 subfamily) LDH65_05930 PF00004 ATPase family associated with various cellular activities (AAA) LDH65_05930 PF17871 AAA lid domain LDH65_05930 PF10431 C-terminal, D2-small domain, of ClpB protein LDH65_05935 PF16970 Type-1 fimbrial protein, A LDH65_05940 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain LDH65_05940 PF02753 Pili assembly chaperone PapD, C-terminal domain LDH65_05945 PF00577 Outer membrane usher protein LDH65_05945 PF13953 PapC C-terminal domain LDH65_05945 PF13954 PapC N-terminal domain LDH65_05950 PF00872 Transposase, Mutator family LDH65_05955 PF03611 PTS system sugar-specific permease component LDH65_05960 PF00293 NUDIX domain LDH65_05965 PF12850 Calcineurin-like phosphoesterase superfamily domain LDH65_05975 PF08338 Domain of unknown function (DUF1731) LDH65_05975 PF01370 NAD dependent epimerase/dehydratase family LDH65_05980 PF00005 ABC transporter LDH65_05985 PF00528 Binding-protein-dependent transport system inner membrane component LDH65_05990 PF00528 Binding-protein-dependent transport system inner membrane component LDH65_05995 PF00497 Bacterial extracellular solute-binding proteins, family 3 LDH65_06000 PF02441 Flavoprotein LDH65_06005 PF00156 Phosphoribosyl transferase domain LDH65_06010 PF02674 Colicin V production protein LDH65_06015 PF05036 Sporulation related domain LDH65_06020 PF08245 Mur ligase middle domain LDH65_06020 PF02875 Mur ligase family, glutamate ligase domain LDH65_06025 PF01039 Carboxyl transferase domain LDH65_06025 PF17848 Acetyl-coA carboxylase zinc finger domain LDH65_06030 PF09335 SNARE associated Golgi protein LDH65_06035 PF01416 tRNA pseudouridine synthase LDH65_06040 PF01118 Semialdehyde dehydrogenase, NAD binding domain LDH65_06040 PF02774 Semialdehyde dehydrogenase, dimerisation domain LDH65_06045 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain LDH65_06045 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain LDH65_06045 PF11890 Domain of unknown function (DUF3410) LDH65_06055 PF00892 EamA-like transporter family LDH65_06065 PF00419 Fimbrial protein LDH65_06070 PF01177 Asp/Glu/Hydantoin racemase LDH65_06080 PF00109 Beta-ketoacyl synthase, N-terminal domain LDH65_06080 PF02801 Beta-ketoacyl synthase, C-terminal domain LDH65_06085 PF01266 FAD dependent oxidoreductase LDH65_06085 PF05430 S-adenosyl-L-methionine-dependent methyltransferase LDH65_06090 PF08891 YfcL protein LDH65_06095 PF04315 Elongation factor P hydroxylase LDH65_06100 PF01925 Sulfite exporter TauE/SafE LDH65_06105 PF03411 Penicillin-insensitive murein endopeptidase LDH65_06110 PF01264 Chorismate synthase LDH65_06115 PF05175 Methyltransferase small domain LDH65_06120 PF01713 Smr domain LDH65_06125 PF00300 Histidine phosphatase superfamily (branch 1) LDH65_06130 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain LDH65_06130 PF00378 Enoyl-CoA hydratase/isomerase LDH65_06130 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain LDH65_06135 PF02803 Thiolase, C-terminal domain LDH65_06135 PF00108 Thiolase, N-terminal domain LDH65_06140 PF04175 Protein of unknown function (DUF406) LDH65_06145 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) LDH65_06150 PF04333 MlaA lipoprotein LDH65_06155 PF03918 Cytochrome C biogenesis protein LDH65_06160 PF03918 Cytochrome C biogenesis protein LDH65_06165 PF08534 Redoxin LDH65_06170 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal LDH65_06170 PF01578 Cytochrome C assembly protein LDH65_06175 PF03100 CcmE LDH65_06180 PF04995 Heme exporter protein D (CcmD) LDH65_06185 PF01578 Cytochrome C assembly protein LDH65_06190 PF03379 CcmB protein LDH65_06195 PF00005 ABC transporter LDH65_06210 PF04011 LemA family LDH65_06220 PF08274 PhnA Zinc-Ribbon LDH65_06220 PF03831 PhnA domain LDH65_06235 PF07024 ImpE protein LDH65_06250 PF04717 Type VI secretion system, phage-baseplate injector LDH65_06255 PF06761 Intracellular multiplication and human macrophage-killing LDH65_06255 PF06744 Type VI secretion protein IcmF C-terminal LDH65_06255 PF14331 ImcF-related N-terminal domain LDH65_06265 PF01695 IstB-like ATP binding protein LDH65_06270 PF00665 Integrase core domain LDH65_06270 PF02796 Helix-turn-helix domain of resolvase LDH65_06275 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LDH65_06275 PF03466 LysR substrate binding domain LDH65_06280 PF00248 Aldo/keto reductase family LDH65_06285 PF00248 Aldo/keto reductase family LDH65_06295 PF14310 Fibronectin type III-like domain LDH65_06295 PF01915 Glycosyl hydrolase family 3 C-terminal domain LDH65_06295 PF00933 Glycosyl hydrolase family 3 N terminal domain LDH65_06310 PF00872 Transposase, Mutator family LDH65_06330 PF03212 Pertactin LDH65_06330 PF16168 Adhesin of bacterial autotransporter system, probable stalk LDH65_06330 PF03797 Autotransporter beta-domain LDH65_06330 PF13018 Extended Signal Peptide of Type V secretion system LDH65_06345 PF05638 Type VI secretion system effector, Hcp LDH65_06365 PF13693 Winged helix-turn-helix DNA-binding LDH65_06375 PF00872 Transposase, Mutator family LDH65_06380 PF13954 PapC N-terminal domain LDH65_06380 PF00577 Outer membrane usher protein LDH65_06380 PF13953 PapC C-terminal domain LDH65_06390 PF05591 Type VI secretion system, VipA, VC_A0107 or Hcp2 LDH65_06395 PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath LDH65_06410 PF05936 Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE LDH65_06420 PF02796 Helix-turn-helix domain of resolvase LDH65_06420 PF00665 Integrase core domain LDH65_06425 PF01695 IstB-like ATP binding protein LDH65_06440 PF00782 Dual specificity phosphatase, catalytic domain LDH65_06445 PF12147 Putative methyltransferase LDH65_06445 PF12146 Serine aminopeptidase, S33 LDH65_06450 PF01553 Acyltransferase LDH65_06460 PF01066 CDP-alcohol phosphatidyltransferase LDH65_06470 PF00589 Phage integrase family LDH65_06500 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain LDH65_06500 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain LDH65_06510 PF01797 Transposase IS200 like LDH65_06520 PF00586 AIR synthase related protein, N-terminal domain LDH65_06520 PF02769 AIR synthase related protein, C-terminal domain LDH65_06525 PF00551 Formyl transferase LDH65_06530 PF13302 Acetyltransferase (GNAT) domain LDH65_06540 PF00005 ABC transporter LDH65_06545 PF00528 Binding-protein-dependent transport system inner membrane component LDH65_06550 PF00528 Binding-protein-dependent transport system inner membrane component LDH65_06555 PF13090 Polyphosphate kinase C-terminal domain 2 LDH65_06555 PF17941 Polyphosphate kinase C-terminal domain 1 LDH65_06555 PF13089 Polyphosphate kinase N-terminal domain LDH65_06555 PF02503 Polyphosphate kinase middle domain LDH65_06560 PF02541 Ppx/GppA phosphatase family LDH65_06570 PF01769 Divalent cation transporter LDH65_06570 PF00571 CBS domain LDH65_06570 PF03448 MgtE intracellular N domain LDH65_06575 PF00012 Hsp70 protein LDH65_06580 PF00528 Binding-protein-dependent transport system inner membrane component LDH65_06585 PF00528 Binding-protein-dependent transport system inner membrane component LDH65_06595 PF00202 Aminotransferase class-III LDH65_06600 PF00392 Bacterial regulatory proteins, gntR family LDH65_06600 PF00155 Aminotransferase class I and II LDH65_06605 PF08402 TOBE domain LDH65_06605 PF00005 ABC transporter LDH65_06610 PF13533 Biotin-lipoyl like LDH65_06615 PF00873 AcrB/AcrD/AcrF family LDH65_06620 PF00873 AcrB/AcrD/AcrF family LDH65_06625 PF07690 Major Facilitator Superfamily LDH65_06630 PF00672 HAMP domain LDH65_06630 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LDH65_06630 PF00512 His Kinase A (phospho-acceptor) domain LDH65_06635 PF00672 HAMP domain LDH65_06635 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LDH65_06635 PF00512 His Kinase A (phospho-acceptor) domain LDH65_06640 PF00072 Response regulator receiver domain LDH65_06640 PF00486 Transcriptional regulatory protein, C terminal LDH65_06645 PF07411 Domain of unknown function (DUF1508) LDH65_06650 PF01136 Peptidase family U32 LDH65_06650 PF16325 Peptidase family U32 C-terminal domain LDH65_06655 PF00781 Diacylglycerol kinase catalytic domain LDH65_06675 PF08543 Phosphomethylpyrimidine kinase LDH65_06690 PF00872 Transposase, Mutator family LDH65_06720 PF05638 Type VI secretion system effector, Hcp LDH65_06725 PF01797 Transposase IS200 like LDH65_06730 PF02540 NAD synthase LDH65_06730 PF00117 Glutamine amidotransferase class-I LDH65_06730 PF00958 GMP synthase C terminal domain LDH65_06735 PF00478 IMP dehydrogenase / GMP reductase domain LDH65_06735 PF00571 CBS domain LDH65_06740 PF02601 Exonuclease VII, large subunit LDH65_06740 PF13742 OB-fold nucleic acid binding domain LDH65_06745 PF07191 zinc-ribbons LDH65_06755 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal LDH65_06755 PF01926 50S ribosome-binding GTPase LDH65_06760 PF13360 PQQ-like domain LDH65_06765 PF09976 Tetratricopeptide repeat-like domain LDH65_06770 PF03129 Anticodon binding domain LDH65_06770 PF13393 Histidyl-tRNA synthetase LDH65_06775 PF04551 GcpE protein LDH65_06780 PF13464 Domain of unknown function (DUF4115) LDH65_06790 PF04055 Radical SAM superfamily LDH65_06795 PF00334 Nucleoside diphosphate kinase LDH65_06805 PF16168 Adhesin of bacterial autotransporter system, probable stalk LDH65_06805 PF03797 Autotransporter beta-domain LDH65_06805 PF03212 Pertactin LDH65_06820 PF07179 SseB protein N-terminal domain LDH65_06820 PF14581 SseB protein C-terminal domain LDH65_06825 PF12404 Peptidase LDH65_06825 PF00883 Cytosol aminopeptidase family, catalytic domain LDH65_06830 PF04384 Iron-sulphur cluster assembly LDH65_06835 PF00111 2Fe-2S iron-sulfur cluster binding domain LDH65_06840 PF00012 Hsp70 protein LDH65_06845 PF07743 HSCB C-terminal oligomerisation domain LDH65_06845 PF00226 DnaJ domain LDH65_06850 PF01521 Iron-sulphur cluster biosynthesis LDH65_06855 PF01592 NifU-like N terminal domain LDH65_06860 PF00266 Aminotransferase class-V LDH65_06865 PF02082 Transcriptional regulator LDH65_06870 PF00588 SpoU rRNA Methylase family LDH65_06875 PF00459 Inositol monophosphatase family LDH65_06880 PF01797 Transposase IS200 like LDH65_06885 PF03824 High-affinity nickel-transport protein LDH65_06890 PF06226 Protein of unknown function (DUF1007) LDH65_06895 PF00874 PRD domain LDH65_06900 PF12832 MFS_1 like family LDH65_06905 PF13505 Outer membrane protein beta-barrel domain LDH65_06915 PF00464 Serine hydroxymethyltransferase LDH65_06920 PF00970 Oxidoreductase FAD-binding domain LDH65_06920 PF00042 Globin LDH65_06920 PF00175 Oxidoreductase NAD-binding domain LDH65_06930 PF00543 Nitrogen regulatory protein P-II LDH65_06935 PF02540 NAD synthase LDH65_06935 PF00795 Carbon-nitrogen hydrolase LDH65_06940 PF00158 Sigma-54 interaction domain LDH65_06940 PF00072 Response regulator receiver domain LDH65_06955 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LDH65_06955 PF00512 His Kinase A (phospho-acceptor) domain LDH65_06985 PF02769 AIR synthase related protein, C-terminal domain LDH65_06985 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal LDH65_06985 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain LDH65_06990 PF01464 Transglycosylase SLT domain LDH65_06990 PF00497 Bacterial extracellular solute-binding proteins, family 3 LDH65_06995 PF14437 MafB19-like deaminase LDH65_07005 PF01380 SIS domain LDH65_07010 PF01380 SIS domain LDH65_07010 PF01418 Helix-turn-helix domain, rpiR family LDH65_07015 PF12838 4Fe-4S dicluster domain LDH65_07020 PF01797 Transposase IS200 like LDH65_07025 PF01648 4'-phosphopantetheinyl transferase superfamily LDH65_07030 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ LDH65_07035 PF01695 IstB-like ATP binding protein LDH65_07040 PF02796 Helix-turn-helix domain of resolvase LDH65_07040 PF00665 Integrase core domain LDH65_07045 PF11967 Recombination protein O N terminal LDH65_07045 PF02565 Recombination protein O C terminal LDH65_07050 PF07650 KH domain LDH65_07050 PF01926 50S ribosome-binding GTPase LDH65_07055 PF14622 Ribonuclease-III-like LDH65_07055 PF00035 Double-stranded RNA binding motif LDH65_07060 PF10502 Signal peptidase, peptidase S26 LDH65_07065 PF00009 Elongation factor Tu GTP binding domain LDH65_07065 PF00679 Elongation factor G C-terminus LDH65_07065 PF06421 GTP-binding protein LepA C-terminus LDH65_07065 PF03144 Elongation factor Tu domain 2 LDH65_07080 PF03888 MucB/RseB N-terminal domain LDH65_07080 PF17188 MucB/RseB C-terminal domain LDH65_07085 PF03872 Anti sigma-E protein RseA, N-terminal domain LDH65_07085 PF03873 Anti sigma-E protein RseA, C-terminal domain LDH65_07090 PF08281 Sigma-70, region 4 LDH65_07090 PF04542 Sigma-70 region 2 LDH65_07095 PF02910 Fumarate reductase flavoprotein C-term LDH65_07095 PF00890 FAD binding domain LDH65_07105 PF05175 Methyltransferase small domain LDH65_07110 PF00270 DEAD/DEAH box helicase LDH65_07110 PF00271 Helicase conserved C-terminal domain LDH65_07115 PF12796 Ankyrin repeats (3 copies) LDH65_07125 PF01228 Glycine radical LDH65_07130 PF03167 Uracil DNA glycosylase superfamily LDH65_07135 PF01470 Pyroglutamyl peptidase LDH65_07150 PF03746 LamB/YcsF family LDH65_07155 PF02626 Carboxyltransferase domain, subdomain A and B LDH65_07170 PF01784 NIF3 (NGG1p interacting factor 3) LDH65_07175 PF02112 cAMP phosphodiesterases class-II LDH65_07180 PF03441 FAD binding domain of DNA photolyase LDH65_07180 PF00875 DNA photolyase LDH65_07185 PF08349 Protein of unknown function (DUF1722) LDH65_07190 PF10725 Protein of unknown function (DUF2517) LDH65_07205 PF03814 Potassium-transporting ATPase A subunit LDH65_07215 PF02669 K+-transporting ATPase, c chain LDH65_07220 PF13492 GAF domain LDH65_07220 PF00512 His Kinase A (phospho-acceptor) domain LDH65_07220 PF02702 Osmosensitive K+ channel His kinase sensor domain LDH65_07220 PF13493 Domain of unknown function (DUF4118) LDH65_07220 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LDH65_07225 PF00486 Transcriptional regulatory protein, C terminal LDH65_07225 PF00072 Response regulator receiver domain LDH65_07240 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I LDH65_07240 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II LDH65_07240 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III LDH65_07240 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain LDH65_07245 PF03925 SeqA protein C-terminal domain LDH65_07245 PF17206 SeqA protein N-terminal domain LDH65_07255 PF04794 YdjC-like protein LDH65_07260 PF07883 Cupin domain LDH65_07260 PF12833 Helix-turn-helix domain LDH65_07265 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit LDH65_07270 PF02378 Phosphotransferase system, EIIC LDH65_07275 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit LDH65_07285 PF02537 CrcB-like protein, Camphor Resistance (CrcB) LDH65_07290 PF02537 CrcB-like protein, Camphor Resistance (CrcB) LDH65_07295 PF02254 TrkA-N domain LDH65_07295 PF07885 Ion channel LDH65_07300 PF06411 HdeA/HdeB family LDH65_07305 PF03824 High-affinity nickel-transport protein LDH65_07310 PF03253 Urea transporter LDH65_07315 PF01774 UreD urease accessory protein LDH65_07320 PF01774 UreD urease accessory protein LDH65_07325 PF02492 CobW/HypB/UreG, nucleotide-binding domain LDH65_07330 PF01730 UreF LDH65_07335 PF05194 UreE urease accessory protein, C-terminal domain LDH65_07335 PF02814 UreE urease accessory protein, N-terminal domain LDH65_07340 PF00449 Urease alpha-subunit, N-terminal domain LDH65_07340 PF01979 Amidohydrolase family LDH65_07345 PF00699 Urease beta subunit LDH65_07350 PF00547 Urease, gamma subunit LDH65_07355 PF00005 ABC transporter LDH65_07360 PF00005 ABC transporter LDH65_07365 PF00528 Binding-protein-dependent transport system inner membrane component LDH65_07365 PF12911 N-terminal TM domain of oligopeptide transport permease C LDH65_07370 PF00528 Binding-protein-dependent transport system inner membrane component LDH65_07375 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle LDH65_07380 PF00313 'Cold-shock' DNA-binding domain LDH65_07390 PF06711 Protein of unknown function (DUF1198) LDH65_07395 PF09400 Protein of unknown function (DUF2002) LDH65_07400 PF06392 Acid shock protein repeat LDH65_07410 PF07972 NrdI Flavodoxin like LDH65_07415 PF00317 Ribonucleotide reductase, all-alpha domain LDH65_07415 PF02867 Ribonucleotide reductase, barrel domain LDH65_07415 PF08343 Ribonucleotide reductase N-terminal LDH65_07420 PF00268 Ribonucleotide reductase, small chain LDH65_07425 PF00005 ABC transporter LDH65_07425 PF00571 CBS domain LDH65_07430 PF00528 Binding-protein-dependent transport system inner membrane component LDH65_07435 PF04069 Substrate binding domain of ABC-type glycine betaine transport system LDH65_07445 PF02796 Helix-turn-helix domain of resolvase LDH65_07445 PF00665 Integrase core domain LDH65_07450 PF01695 IstB-like ATP binding protein LDH65_07465 PF00589 Phage integrase family LDH65_07465 PF13356 Arm DNA-binding domain LDH65_07475 PF12697 Alpha/beta hydrolase family LDH65_07480 PF01402 Ribbon-helix-helix protein, copG family LDH65_07490 PF00258 Flavodoxin LDH65_07495 PF01475 Ferric uptake regulator family LDH65_07505 PF03573 outer membrane porin, OprD family LDH65_07510 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain LDH65_07510 PF00749 tRNA synthetases class I (E and Q), catalytic domain LDH65_07515 PF01797 Transposase IS200 like LDH65_07520 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 LDH65_07520 PF00367 phosphotransferase system, EIIB LDH65_07520 PF02378 Phosphotransferase system, EIIC LDH65_07525 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase LDH65_07530 PF01979 Amidohydrolase family LDH65_07535 PF01047 MarR family LDH65_07535 PF00480 ROK family LDH65_07540 PF13344 Haloacid dehalogenase-like hydrolase LDH65_07545 PF00733 Asparagine synthase LDH65_07545 PF13537 Glutamine amidotransferase domain LDH65_07580 PF01494 FAD binding domain LDH65_07585 PF04055 Radical SAM superfamily LDH65_07585 PF01938 TRAM domain LDH65_07585 PF00919 Uncharacterized protein family UPF0004 LDH65_07590 PF02562 PhoH-like protein LDH65_07595 PF02130 Uncharacterized protein family UPF0054 LDH65_07600 PF00571 CBS domain LDH65_07600 PF03471 Transporter associated domain LDH65_07605 PF00795 Carbon-nitrogen hydrolase LDH65_07610 PF00497 Bacterial extracellular solute-binding proteins, family 3 LDH65_07615 PF00528 Binding-protein-dependent transport system inner membrane component LDH65_07620 PF00528 Binding-protein-dependent transport system inner membrane component LDH65_07625 PF00005 ABC transporter LDH65_07630 PF07295 Zinc-ribbon containing domain LDH65_07635 PF08264 Anticodon-binding domain of tRNA LDH65_07635 PF00133 tRNA synthetases class I (I, L, M and V) LDH65_07635 PF13603 Leucyl-tRNA synthetase, Domain 2 LDH65_07640 PF04390 Lipopolysaccharide-assembly LDH65_07645 PF14840 Processivity clamp loader gamma complex DNA pol III C-term LDH65_07645 PF06144 DNA polymerase III, delta subunit LDH65_07650 PF01467 Cytidylyltransferase-like LDH65_07660 PF02590 Predicted SPOUT methyltransferase LDH65_07665 PF00905 Penicillin binding protein transpeptidase domain LDH65_07665 PF03717 Penicillin-binding Protein dimerisation domain LDH65_07670 PF01098 Cell cycle protein LDH65_07675 PF05036 Sporulation related domain LDH65_07675 PF03330 Lytic transglycolase LDH65_07680 PF07943 Penicillin-binding protein 5, C-terminal domain LDH65_07680 PF00768 D-alanyl-D-alanine carboxypeptidase LDH65_07685 PF04359 Protein of unknown function (DUF493) LDH65_07690 PF03099 Biotin/lipoate A/B protein ligase family LDH65_07695 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family LDH65_07695 PF04055 Radical SAM superfamily LDH65_07700 PF02416 mttA/Hcf106 family LDH65_07705 PF02537 CrcB-like protein, Camphor Resistance (CrcB) LDH65_07710 PF00313 'Cold-shock' DNA-binding domain LDH65_07715 PF00313 'Cold-shock' DNA-binding domain LDH65_07720 PF00196 Bacterial regulatory proteins, luxR family LDH65_07745 PF00005 ABC transporter LDH65_07745 PF00664 ABC transporter transmembrane region LDH65_07755 PF04962 KduI/IolB family LDH65_07760 PF01261 Xylose isomerase-like TIM barrel LDH65_07765 PF00294 pfkB family carbohydrate kinase LDH65_07770 PF01408 Oxidoreductase family, NAD-binding Rossmann fold LDH65_07770 PF02894 Oxidoreductase family, C-terminal alpha/beta domain LDH65_07775 PF02653 Branched-chain amino acid transport system / permease component LDH65_07780 PF00005 ABC transporter LDH65_07785 PF13407 Periplasmic binding protein domain LDH65_07795 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain LDH65_07795 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain LDH65_07795 PF00205 Thiamine pyrophosphate enzyme, central domain LDH65_07800 PF00171 Aldehyde dehydrogenase family LDH65_07815 PF07703 Alpha-2-macroglobulin bait region domain LDH65_07815 PF17973 Bacterial Alpha-2-macroglobulin MG10 domain LDH65_07815 PF17972 Bacterial Alpha-2-macroglobulin MG5 domain LDH65_07815 PF17962 Bacterial macroglobulin domain 6 LDH65_07815 PF01835 MG2 domain LDH65_07815 PF00207 Alpha-2-macroglobulin family LDH65_07815 PF11974 Bacterial alpha-2-macroglobulin MG3 domain LDH65_07820 PF06832 Penicillin-Binding Protein C-terminus Family LDH65_07820 PF00912 Transglycosylase LDH65_07820 PF00905 Penicillin binding protein transpeptidase domain LDH65_07825 PF00872 Transposase, Mutator family LDH65_07835 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 LDH65_07855 PF07085 DRTGG domain LDH65_07855 PF01515 Phosphate acetyl/butaryl transferase LDH65_07860 PF00871 Acetokinase family LDH65_07865 PF04217 Protein of unknown function, DUF412 LDH65_07870 PF03887 YfbU domain LDH65_07875 PF13419 Haloacid dehalogenase-like hydrolase LDH65_07880 PF03600 Citrate transporter LDH65_07880 PF02080 TrkA-C domain LDH65_07895 PF00155 Aminotransferase class I and II LDH65_07900 PF03466 LysR substrate binding domain LDH65_07900 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LDH65_07905 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 LDH65_07910 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit LDH65_07915 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit LDH65_07915 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit LDH65_07925 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit LDH65_07925 PF10531 SLBB domain LDH65_07925 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region LDH65_07930 PF00384 Molybdopterin oxidoreductase LDH65_07930 PF01568 Molydopterin dinucleotide binding domain LDH65_07930 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region LDH65_07930 PF04879 Molybdopterin oxidoreductase Fe4S4 domain LDH65_07935 PF00146 NADH dehydrogenase LDH65_07940 PF12838 4Fe-4S dicluster domain LDH65_07945 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 LDH65_07950 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L LDH65_07955 PF00361 Proton-conducting membrane transporter LDH65_07955 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus LDH65_07960 PF00361 Proton-conducting membrane transporter LDH65_07965 PF00361 Proton-conducting membrane transporter LDH65_07975 PF04074 YhcH/YjgK/YiaL LDH65_07980 PF01202 Shikimate kinase LDH65_07985 PF00106 short chain dehydrogenase LDH65_07990 PF02638 Glycosyl hydrolase-like 10 LDH65_07995 PF00356 Bacterial regulatory proteins, lacI family LDH65_08000 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain LDH65_08000 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain LDH65_08005 PF07690 Major Facilitator Superfamily LDH65_08010 PF03928 Haem-degrading LDH65_08015 PF00920 Dehydratase family LDH65_08020 PF05957 Bacterial protein of unknown function (DUF883) LDH65_08030 PF00425 chorismate binding enzyme LDH65_08035 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain LDH65_08035 PF16582 Middle domain of thiamine pyrophosphate LDH65_08035 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain LDH65_08040 PF12697 Alpha/beta hydrolase family LDH65_08045 PF00378 Enoyl-CoA hydratase/isomerase LDH65_08050 PF13378 Enolase C-terminal domain-like LDH65_08055 PF00501 AMP-binding enzyme LDH65_08055 PF13193 AMP-binding enzyme C-terminal domain LDH65_08060 PF02885 Glycosyl transferase family, helical bundle domain LDH65_08070 PF07338 Protein of unknown function (DUF1471) LDH65_08075 PF05971 RNA methyltransferase LDH65_08090 PF01695 IstB-like ATP binding protein LDH65_08095 PF02796 Helix-turn-helix domain of resolvase LDH65_08095 PF00665 Integrase core domain LDH65_08100 PF13426 PAS domain LDH65_08100 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LDH65_08100 PF08447 PAS fold LDH65_08105 PF00005 ABC transporter LDH65_08110 PF00528 Binding-protein-dependent transport system inner membrane component LDH65_08115 PF00497 Bacterial extracellular solute-binding proteins, family 3 LDH65_08125 PF00210 Ferritin-like domain LDH65_08130 PF13649 Methyltransferase domain LDH65_08140 PF00892 EamA-like transporter family LDH65_08145 PF13505 Outer membrane protein beta-barrel domain LDH65_08165 PF00107 Zinc-binding dehydrogenase LDH65_08165 PF08240 Alcohol dehydrogenase GroES-like domain LDH65_08170 PF13407 Periplasmic binding protein domain LDH65_08175 PF00005 ABC transporter LDH65_08180 PF02653 Branched-chain amino acid transport system / permease component LDH65_08185 PF00356 Bacterial regulatory proteins, lacI family LDH65_08190 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LDH65_08190 PF03466 LysR substrate binding domain LDH65_08195 PF00180 Isocitrate/isopropylmalate dehydrogenase LDH65_08205 PF02028 BCCT, betaine/carnitine/choline family transporter LDH65_08210 PF00848 Ring hydroxylating alpha subunit (catalytic domain) LDH65_08210 PF00355 Rieske [2Fe-2S] domain LDH65_08215 PF00111 2Fe-2S iron-sulfur cluster binding domain LDH65_08215 PF00175 Oxidoreductase NAD-binding domain LDH65_08215 PF00970 Oxidoreductase FAD-binding domain LDH65_08220 PF08479 POTRA domain, ShlB-type LDH65_08220 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB LDH65_08220 PF17287 POTRA domain LDH65_08225 PF05860 haemagglutination activity domain LDH65_08225 PF04829 Pre-toxin domain with VENN motif LDH65_08225 PF13018 Extended Signal Peptide of Type V secretion system LDH65_08225 PF13332 Hemagglutinin repeat LDH65_08270 PF05594 Haemagluttinin repeat LDH65_08270 PF13332 Hemagglutinin repeat LDH65_08270 PF05860 haemagglutination activity domain LDH65_08270 PF15526 Novel toxin 21 LDH65_08270 PF04829 Pre-toxin domain with VENN motif LDH65_08280 PF17912 MalK OB fold domain LDH65_08280 PF00005 ABC transporter LDH65_08285 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III LDH65_08285 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain LDH65_08285 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I LDH65_08285 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II LDH65_08290 PF00356 Bacterial regulatory proteins, lacI family LDH65_08300 PF00528 Binding-protein-dependent transport system inner membrane component LDH65_08305 PF00528 Binding-protein-dependent transport system inner membrane component LDH65_08310 PF04041 beta-1,4-mannooligosaccharide phosphorylase LDH65_08330 PF00924 Mechanosensitive ion channel LDH65_08335 PF01867 CRISPR associated protein Cas1 LDH65_08345 PF09611 CRISPR-associated protein (Cas_Csy1) LDH65_08350 PF09614 CRISPR-associated protein (Cas_Csy2) LDH65_08355 PF09615 CRISPR-associated protein (Cas_Csy3) LDH65_08360 PF09618 CRISPR-associated protein (Cas_Csy4) LDH65_08365 PF00248 Aldo/keto reductase family LDH65_08375 PF00083 Sugar (and other) transporter LDH65_08380 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LDH65_08380 PF03466 LysR substrate binding domain LDH65_08385 PF03472 Autoinducer binding domain LDH65_08385 PF00196 Bacterial regulatory proteins, luxR family LDH65_08390 PF00765 Autoinducer synthase LDH65_08405 PF17773 UPF0176 acylphosphatase like domain LDH65_08405 PF00581 Rhodanese-like domain LDH65_08405 PF12368 Rhodanase C-terminal LDH65_08410 PF01594 AI-2E family transporter LDH65_08420 PF00196 Bacterial regulatory proteins, luxR family LDH65_08425 PF01266 FAD dependent oxidoreductase LDH65_08430 PF00872 Transposase, Mutator family LDH65_08435 PF13991 BssS protein family LDH65_08440 PF06183 DinI-like family LDH65_08445 PF01979 Amidohydrolase family LDH65_08450 PF03992 Antibiotic biosynthesis monooxygenase LDH65_08460 PF00872 Transposase, Mutator family LDH65_08465 PF12111 Polyribonucleotide phosphorylase C terminal LDH65_08465 PF10150 Ribonuclease E/G family LDH65_08465 PF00575 S1 RNA binding domain LDH65_08470 PF00849 RNA pseudouridylate synthase LDH65_08470 PF01479 S4 domain LDH65_08480 PF02545 Maf-like protein LDH65_08485 PF02620 Large ribosomal RNA subunit accumulation protein YceD LDH65_08490 PF01783 Ribosomal L32p protein family LDH65_08495 PF02504 Fatty acid synthesis protein LDH65_08500 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal LDH65_08500 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III LDH65_08505 PF00698 Acyl transferase domain LDH65_08515 PF00550 Phosphopantetheine attachment site LDH65_08520 PF00109 Beta-ketoacyl synthase, N-terminal domain LDH65_08520 PF02801 Beta-ketoacyl synthase, C-terminal domain LDH65_08525 PF01797 Transposase IS200 like LDH65_08530 PF01063 Amino-transferase class IV LDH65_08540 PF02618 YceG-like family LDH65_08545 PF02223 Thymidylate kinase LDH65_08550 PF09115 DNA polymerase III, delta subunit, C terminal LDH65_08555 PF01026 TatD related DNase LDH65_08560 PF02378 Phosphotransferase system, EIIC LDH65_08560 PF00367 phosphotransferase system, EIIB LDH65_08570 PF08501 Shikimate dehydrogenase substrate binding domain LDH65_08575 PF01230 HIT domain LDH65_08580 PF07233 Protein of unknown function (DUF1425) LDH65_08585 PF08139 Prokaryotic membrane lipoprotein lipid attachment site LDH65_08585 PF13036 Peptidoglycan-synthase activator LpoB LDH65_08590 PF01636 Phosphotransferase enzyme family LDH65_08595 PF00933 Glycosyl hydrolase family 3 N terminal domain LDH65_08600 PF05728 Uncharacterised protein family (UPF0227) LDH65_08605 PF07992 Pyridine nucleotide-disulphide oxidoreductase LDH65_08620 PF00872 Transposase, Mutator family LDH65_08625 PF05433 Glycine zipper 2TM domain LDH65_08630 PF02559 CarD-like/TRCF domain LDH65_08630 PF17757 UvrB interaction domain LDH65_08630 PF03461 TRCF domain LDH65_08630 PF00270 DEAD/DEAH box helicase LDH65_08630 PF00271 Helicase conserved C-terminal domain LDH65_08635 PF12704 MacB-like periplasmic core domain LDH65_08635 PF02687 FtsX-like permease family LDH65_08640 PF00005 ABC transporter LDH65_08645 PF12704 MacB-like periplasmic core domain LDH65_08645 PF02687 FtsX-like permease family LDH65_08655 PF02146 Sir2 family LDH65_08660 PF07687 Peptidase dimerisation domain LDH65_08660 PF01546 Peptidase family M20/M25/M40 LDH65_08665 PF08007 Cupin superfamily protein LDH65_08670 PF08918 PhoQ Sensor LDH65_08670 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LDH65_08675 PF00486 Transcriptional regulatory protein, C terminal LDH65_08675 PF00072 Response regulator receiver domain LDH65_08685 PF00206 Lyase LDH65_08685 PF08328 Adenylosuccinate lyase C-terminal LDH65_08690 PF04356 Protein of unknown function (DUF489) LDH65_08700 PF00293 NUDIX domain LDH65_08705 PF00849 RNA pseudouridylate synthase LDH65_08710 PF00180 Isocitrate/isopropylmalate dehydrogenase LDH65_08715 PF00356 Bacterial regulatory proteins, lacI family LDH65_08715 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family LDH65_08725 PF08447 PAS fold LDH65_08725 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LDH65_08730 PF05368 NmrA-like family LDH65_08735 PF01638 HxlR-like helix-turn-helix LDH65_08750 PF14001 YdfZ protein LDH65_08760 PF01037 Lrp/AsnC ligand binding domain LDH65_08760 PF13404 AsnC-type helix-turn-helix domain LDH65_08770 PF10777 Inner membrane protein YlaC LDH65_08775 PF00550 Phosphopantetheine attachment site LDH65_08775 PF00107 Zinc-binding dehydrogenase LDH65_08775 PF08659 KR domain LDH65_08775 PF16197 Ketoacyl-synthetase C-terminal extension LDH65_08775 PF02801 Beta-ketoacyl synthase, C-terminal domain LDH65_08775 PF00109 Beta-ketoacyl synthase, N-terminal domain LDH65_08775 PF08240 Alcohol dehydrogenase GroES-like domain LDH65_08775 PF14765 Polyketide synthase dehydratase LDH65_08775 PF00698 Acyl transferase domain LDH65_08780 PF00703 Glycosyl hydrolases family 2 LDH65_08780 PF02929 Beta galactosidase small chain LDH65_08780 PF02836 Glycosyl hydrolases family 2, TIM barrel domain LDH65_08780 PF16353 Domain of unknown function(DUF4981) LDH65_08780 PF02837 Glycosyl hydrolases family 2, sugar binding domain LDH65_08785 PF00313 'Cold-shock' DNA-binding domain LDH65_08790 PF10781 Dextransucrase DSRB LDH65_08800 PF02308 MgtC family LDH65_08805 PF00690 Cation transporter/ATPase, N-terminus LDH65_08805 PF00689 Cation transporting ATPase, C-terminus LDH65_08815 PF05280 Flagellar transcriptional activator (FlhC) LDH65_08820 PF01618 MotA/TolQ/ExbB proton channel family LDH65_08835 PF01627 Hpt domain LDH65_08835 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LDH65_08835 PF02895 Signal transducing histidine kinase, homodimeric domain LDH65_08835 PF09078 CheY binding LDH65_08835 PF01584 CheW-like domain LDH65_08840 PF01584 CheW-like domain LDH65_08845 PF07690 Major Facilitator Superfamily LDH65_08850 PF01042 Endoribonuclease L-PSP LDH65_08860 PF08348 YheO-like PAS domain LDH65_08860 PF13309 HTH domain LDH65_08865 PF12951 Passenger-associated-transport-repeat LDH65_08880 PF00672 HAMP domain LDH65_08880 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LDH65_08880 PF02203 Tar ligand binding domain homologue LDH65_08885 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LDH65_08885 PF00672 HAMP domain LDH65_08885 PF02203 Tar ligand binding domain homologue LDH65_08890 PF01739 CheR methyltransferase, SAM binding domain LDH65_08890 PF03705 CheR methyltransferase, all-alpha domain LDH65_08895 PF01339 CheB methylesterase LDH65_08895 PF00072 Response regulator receiver domain LDH65_08900 PF00072 Response regulator receiver domain LDH65_08905 PF04344 Chemotaxis phosphatase, CheZ LDH65_08910 PF01510 N-acetylmuramoyl-L-alanine amidase LDH65_08925 PF00842 Alanine racemase, C-terminal domain LDH65_08925 PF01168 Alanine racemase, N-terminal domain LDH65_08955 PF01695 IstB-like ATP binding protein LDH65_08960 PF02796 Helix-turn-helix domain of resolvase LDH65_08960 PF00665 Integrase core domain LDH65_08975 PF07351 Protein of unknown function (DUF1480) LDH65_08990 PF02753 Pili assembly chaperone PapD, C-terminal domain LDH65_08990 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain LDH65_09010 PF02470 MlaD protein LDH65_09015 PF04403 Paraquat-inducible protein A LDH65_09020 PF13185 GAF domain LDH65_09025 PF17516 ProQ C-terminal domain LDH65_09025 PF04352 ProQ/FINO family LDH65_09030 PF11818 C-terminal domain of tail specific protease (DUF3340) LDH65_09030 PF17804 Tail specific protease N-terminal domain LDH65_09030 PF00595 PDZ domain LDH65_09030 PF03572 Peptidase family S41 LDH65_09035 PF01435 Peptidase family M48 LDH65_09040 PF00419 Fimbrial protein LDH65_09045 PF02753 Pili assembly chaperone PapD, C-terminal domain LDH65_09045 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain LDH65_09050 PF00577 Outer membrane usher protein LDH65_09050 PF13954 PapC N-terminal domain LDH65_09050 PF13953 PapC C-terminal domain LDH65_09060 PF02753 Pili assembly chaperone PapD, C-terminal domain LDH65_09060 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain LDH65_09065 PF07690 Major Facilitator Superfamily LDH65_09070 PF14583 Oligogalacturonate lyase LDH65_09075 PF01614 Bacterial transcriptional regulator LDH65_09075 PF09339 IclR helix-turn-helix domain LDH65_09080 PF01510 N-acetylmuramoyl-L-alanine amidase LDH65_09085 PF00375 Sodium:dicarboxylate symporter family LDH65_09090 PF04307 LexA-binding, inner membrane-associated putative hydrolase LDH65_09095 PF06178 Oligogalacturonate-specific porin protein (KdgM) LDH65_09100 PF01547 Bacterial extracellular solute-binding protein LDH65_09105 PF00005 ABC transporter LDH65_09105 PF17912 MalK OB fold domain LDH65_09105 PF03459 TOBE domain LDH65_09110 PF00528 Binding-protein-dependent transport system inner membrane component LDH65_09115 PF00528 Binding-protein-dependent transport system inner membrane component LDH65_09120 PF06917 Periplasmic pectate lyase LDH65_09130 PF04962 KduI/IolB family LDH65_09135 PF07883 Cupin domain LDH65_09140 PF00872 Transposase, Mutator family LDH65_09145 PF00356 Bacterial regulatory proteins, lacI family LDH65_09145 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family LDH65_09150 PF00665 Integrase core domain LDH65_09150 PF02796 Helix-turn-helix domain of resolvase LDH65_09155 PF01695 IstB-like ATP binding protein LDH65_09160 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family LDH65_09160 PF00356 Bacterial regulatory proteins, lacI family LDH65_09170 PF06167 Glucose-regulated metallo-peptidase M90 LDH65_09185 PF00005 ABC transporter LDH65_09185 PF00664 ABC transporter transmembrane region LDH65_09195 PF12833 Helix-turn-helix domain LDH65_09200 PF10964 Protein of unknown function (DUF2766) LDH65_09205 PF13996 YobH-like protein LDH65_09210 PF13998 MgrB protein LDH65_09215 PF13974 YebO-like protein LDH65_09230 PF00324 Amino acid permease LDH65_09235 PF07017 Antimicrobial peptide resistance and lipid A acylation protein PagP LDH65_09240 PF10736 Protein of unknown function (DUF2627) LDH65_09245 PF00313 'Cold-shock' DNA-binding domain LDH65_09250 PF02578 Multi-copper polyphenol oxidoreductase laccase LDH65_09255 PF13847 Methyltransferase domain LDH65_09265 PF05231 MASE1 LDH65_09265 PF13426 PAS domain LDH65_09265 PF08448 PAS fold LDH65_09265 PF00990 Diguanylate cyclase, GGDEF domain LDH65_09265 PF00563 EAL domain LDH65_09265 PF08447 PAS fold LDH65_09270 PF00593 TonB dependent receptor LDH65_09270 PF07715 TonB-dependent Receptor Plug Domain LDH65_09275 PF02659 Putative manganese efflux pump LDH65_09280 PF06173 Protein of unknown function (DUF986) LDH65_09285 PF03613 PTS system mannose/fructose/sorbose family IID component LDH65_09290 PF03609 PTS system sorbose-specific iic component LDH65_09295 PF03830 PTS system sorbose subfamily IIB component LDH65_09295 PF03610 PTS system fructose IIA component LDH65_09305 PF01047 MarR family LDH65_09310 PF01557 Fumarylacetoacetate (FAA) hydrolase family LDH65_09315 PF01557 Fumarylacetoacetate (FAA) hydrolase family LDH65_09320 PF00171 Aldehyde dehydrogenase family LDH65_09325 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase LDH65_09330 PF02962 5-carboxymethyl-2-hydroxymuconate isomerase LDH65_09335 PF01557 Fumarylacetoacetate (FAA) hydrolase family LDH65_09340 PF03328 HpcH/HpaI aldolase/citrate lyase family LDH65_09345 PF07690 Major Facilitator Superfamily LDH65_09350 PF03241 4-hydroxyphenylacetate 3-hydroxylase C terminal LDH65_09350 PF11794 4-hydroxyphenylacetate 3-hydroxylase N terminal LDH65_09355 PF01613 Flavin reductase like domain LDH65_09360 PF03313 Serine dehydratase alpha chain LDH65_09360 PF03315 Serine dehydratase beta chain LDH65_09365 PF00293 NUDIX domain LDH65_09370 PF04715 Anthranilate synthase component I, N terminal region LDH65_09370 PF00425 chorismate binding enzyme LDH65_09375 PF03701 Uncharacterised protein family (UPF0181) LDH65_09380 PF02222 ATP-grasp domain LDH65_09385 PF03880 DbpA RNA binding domain LDH65_09385 PF00270 DEAD/DEAH box helicase LDH65_09385 PF00271 Helicase conserved C-terminal domain LDH65_09390 PF07130 YebG protein LDH65_09395 PF04266 ASCH domain LDH65_09400 PF13995 YebF-like protein LDH65_09405 PF00326 Prolyl oligopeptidase family LDH65_09405 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain LDH65_09410 PF00561 alpha/beta hydrolase fold LDH65_09415 PF06440 DNA polymerase III, theta subunit LDH65_09420 PF00210 Ferritin-like domain LDH65_09425 PF04234 CopC domain LDH65_09435 PF10709 Protein of unknown function (DUF2511) LDH65_09450 PF01312 FlhB HrpN YscU SpaS Family LDH65_09455 PF00771 FHIPEP family LDH65_09460 PF06366 Flagellar protein FlhE LDH65_09480 PF05130 FlgN protein LDH65_09485 PF04316 Anti-sigma-28 factor, FlgM LDH65_09490 PF13144 Chaperone for flagella basal body P-ring formation LDH65_09490 PF17656 FlgA N-terminal domain LDH65_09495 PF00460 Flagella basal body rod protein LDH65_09500 PF00460 Flagella basal body rod protein LDH65_09500 PF06429 Flagellar basal body rod FlgEFG protein C-terminal LDH65_09505 PF13861 FlgD Tudor-like domain LDH65_09505 PF13860 FlgD Ig-like domain LDH65_09505 PF03963 Flagellar hook capping protein - N-terminal region LDH65_09510 PF06429 Flagellar basal body rod FlgEFG protein C-terminal LDH65_09510 PF00460 Flagella basal body rod protein LDH65_09510 PF07559 Flagellar basal body protein FlaE LDH65_09525 PF02107 Flagellar L-ring protein LDH65_09530 PF02119 Flagellar P-ring protein LDH65_09535 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase LDH65_09535 PF10135 Rod binding protein LDH65_09540 PF00460 Flagella basal body rod protein LDH65_09540 PF06429 Flagellar basal body rod FlgEFG protein C-terminal LDH65_09545 PF00669 Bacterial flagellin N-terminal helical region LDH65_09550 PF04198 Putative sugar-binding domain LDH65_09555 PF00596 Class II Aldolase and Adducin N-terminal domain LDH65_09560 PF02653 Branched-chain amino acid transport system / permease component LDH65_09565 PF13407 Periplasmic binding protein domain LDH65_09570 PF00005 ABC transporter LDH65_09575 PF02653 Branched-chain amino acid transport system / permease component LDH65_09580 PF00294 pfkB family carbohydrate kinase LDH65_09595 PF01311 Bacterial export proteins, family 1 LDH65_09600 PF01313 Bacterial export proteins, family 3 LDH65_09605 PF00813 FliP family LDH65_09610 PF04347 Flagellar biosynthesis protein, FliO LDH65_09615 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term LDH65_09615 PF16973 Flagellar motor switch protein FliN N-terminal LDH65_09620 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term LDH65_09620 PF02154 Flagellar motor switch protein FliM LDH65_09625 PF03748 Flagellar basal body-associated protein FliL LDH65_09630 PF02120 Flagellar hook-length control protein FliK LDH65_09635 PF02050 Flagellar FliJ protein LDH65_09640 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain LDH65_09640 PF18269 T3SS EscN ATPase C-terminal domain LDH65_09645 PF02108 Flagellar assembly protein FliH LDH65_09650 PF14842 FliG N-terminal domain LDH65_09650 PF14841 FliG middle domain LDH65_09650 PF01706 FliG C-terminal domain LDH65_09655 PF08345 Flagellar M-ring protein C-terminal LDH65_09655 PF01514 Secretory protein of YscJ/FliF family LDH65_09660 PF02049 Flagellar hook-basal body complex protein FliE LDH65_09680 PF00730 HhH-GPD superfamily base excision DNA repair protein LDH65_09685 PF01966 HD domain LDH65_09690 PF02743 Cache domain LDH65_09690 PF00211 Adenylate and Guanylate cyclase catalytic domain LDH65_09690 PF00672 HAMP domain LDH65_09695 PF12833 Helix-turn-helix domain LDH65_09700 PF05400 Flagellar protein FliT LDH65_09705 PF02561 Flagellar protein FliS LDH65_09710 PF07196 Flagellin hook IN motif LDH65_09710 PF02465 Flagellar hook-associated protein 2 N-terminus LDH65_09710 PF07195 Flagellar hook-associated protein 2 C-terminus LDH65_09715 PF00700 Bacterial flagellin C-terminal helical region LDH65_09715 PF08884 Flagellin D3 domain LDH65_09715 PF00669 Bacterial flagellin N-terminal helical region LDH65_09720 PF04542 Sigma-70 region 2 LDH65_09720 PF04539 Sigma-70 region 3 LDH65_09720 PF04545 Sigma-70, region 4 LDH65_09725 PF02899 Phage integrase, N-terminal SAM-like domain LDH65_09730 PF00291 Pyridoxal-phosphate dependent enzyme LDH65_09735 PF00497 Bacterial extracellular solute-binding proteins, family 3 LDH65_09740 PF00528 Binding-protein-dependent transport system inner membrane component LDH65_09745 PF00005 ABC transporter LDH65_09765 PF18327 Proline utilization A proline dehydrogenase N-terminal domain LDH65_09765 PF14850 DNA-binding domain of Proline dehydrogenase LDH65_09765 PF00171 Aldehyde dehydrogenase family LDH65_09765 PF01619 Proline dehydrogenase LDH65_09775 PF00474 Sodium:solute symporter family LDH65_09780 PF03239 Iron permease FTR1 family LDH65_09785 PF09375 Imelysin LDH65_09785 PF13473 Cupredoxin-like domain LDH65_09790 PF04261 Dyp-type peroxidase family LDH65_09795 PF03358 NADPH-dependent FMN reductase LDH65_09800 PF01344 Kelch motif LDH65_09805 PF00324 Amino acid permease LDH65_09815 PF13505 Outer membrane protein beta-barrel domain LDH65_09840 PF01541 GIY-YIG catalytic domain LDH65_09840 PF08459 UvrC Helix-hairpin-helix N-terminal LDH65_09840 PF02151 UvrB/uvrC motif LDH65_09845 PF01066 CDP-alcohol phosphatidyltransferase LDH65_09870 PF00772 DnaB-like helicase N terminal domain LDH65_09870 PF03796 DnaB-like helicase C terminal domain LDH65_09870 PF14528 LAGLIDADG-like domain LDH65_09965 PF00392 Bacterial regulatory proteins, gntR family LDH65_09965 PF07702 UTRA domain LDH65_09970 PF01408 Oxidoreductase family, NAD-binding Rossmann fold LDH65_09970 PF02894 Oxidoreductase family, C-terminal alpha/beta domain LDH65_09980 PF00528 Binding-protein-dependent transport system inner membrane component LDH65_09985 PF00528 Binding-protein-dependent transport system inner membrane component LDH65_09990 PF00005 ABC transporter LDH65_09990 PF08402 TOBE domain LDH65_10010 PF02796 Helix-turn-helix domain of resolvase LDH65_10010 PF00665 Integrase core domain LDH65_10015 PF01695 IstB-like ATP binding protein LDH65_10045 PF00593 TonB dependent receptor LDH65_10045 PF07715 TonB-dependent Receptor Plug Domain LDH65_10050 PF00501 AMP-binding enzyme LDH65_10050 PF13193 AMP-binding enzyme C-terminal domain LDH65_10055 PF00975 Thioesterase domain LDH65_10065 PF00550 Phosphopantetheine attachment site LDH65_10065 PF00698 Acyl transferase domain LDH65_10065 PF00668 Condensation domain LDH65_10065 PF16197 Ketoacyl-synthetase C-terminal extension LDH65_10065 PF00109 Beta-ketoacyl synthase, N-terminal domain LDH65_10065 PF02801 Beta-ketoacyl synthase, C-terminal domain LDH65_10070 PF00550 Phosphopantetheine attachment site LDH65_10070 PF08242 Methyltransferase domain LDH65_10070 PF00501 AMP-binding enzyme LDH65_10070 PF00668 Condensation domain LDH65_10080 PF04954 Siderophore-interacting protein LDH65_10080 PF00664 ABC transporter transmembrane region LDH65_10080 PF00005 ABC transporter LDH65_10080 PF08021 Siderophore-interacting FAD-binding domain LDH65_10085 PF00005 ABC transporter LDH65_10085 PF00664 ABC transporter transmembrane region LDH65_10090 PF07690 Major Facilitator Superfamily LDH65_10095 PF00425 chorismate binding enzyme LDH65_10100 PF00589 Phage integrase family LDH65_10100 PF13356 Arm DNA-binding domain LDH65_10110 PF02753 Pili assembly chaperone PapD, C-terminal domain LDH65_10110 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain LDH65_10120 PF13953 PapC C-terminal domain LDH65_10120 PF13954 PapC N-terminal domain LDH65_10120 PF00577 Outer membrane usher protein LDH65_10125 PF02753 Pili assembly chaperone PapD, C-terminal domain LDH65_10125 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain LDH65_10135 PF00497 Bacterial extracellular solute-binding proteins, family 3 LDH65_10135 PF00072 Response regulator receiver domain LDH65_10135 PF00989 PAS fold LDH65_10135 PF01627 Hpt domain LDH65_10135 PF00512 His Kinase A (phospho-acceptor) domain LDH65_10135 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LDH65_10140 PF00196 Bacterial regulatory proteins, luxR family LDH65_10140 PF00072 Response regulator receiver domain LDH65_10145 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain LDH65_10145 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain LDH65_10150 PF01575 MaoC like domain LDH65_10155 PF03328 HpcH/HpaI aldolase/citrate lyase family LDH65_10160 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LDH65_10160 PF03466 LysR substrate binding domain LDH65_10175 PF07690 Major Facilitator Superfamily LDH65_10180 PF04909 Amidohydrolase LDH65_10190 PF02508 Rnf-Nqr subunit, membrane protein LDH65_10195 PF00155 Aminotransferase class I and II LDH65_10200 PF00324 Amino acid permease LDH65_10205 PF00455 DeoR C terminal sensor domain LDH65_10205 PF08220 DeoR-like helix-turn-helix domain LDH65_10215 PF04960 Glutaminase LDH65_10230 PF03239 Iron permease FTR1 family LDH65_10235 PF10634 Fe2+ transport protein LDH65_10245 PF12704 MacB-like periplasmic core domain LDH65_10245 PF00005 ABC transporter LDH65_10245 PF02687 FtsX-like permease family LDH65_10255 PF00005 ABC transporter LDH65_10255 PF02687 FtsX-like permease family LDH65_10255 PF12704 MacB-like periplasmic core domain LDH65_10260 PF00578 AhpC/TSA family LDH65_10270 PF09313 Domain of unknown function (DUF1971) LDH65_10270 PF03848 Tellurite resistance protein TehB LDH65_10275 PF00557 Metallopeptidase family M24 LDH65_10285 PF14883 Hypothetical glycosyl hydrolase family 13 LDH65_10285 PF01522 Polysaccharide deacetylase LDH65_10290 PF00535 Glycosyl transferase family 2 LDH65_10295 PF13994 PgaD-like protein LDH65_10310 PF02562 PhoH-like protein LDH65_10315 PF01699 Sodium/calcium exchanger protein LDH65_10320 PF00672 HAMP domain LDH65_10320 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LDH65_10320 PF07730 Histidine kinase LDH65_10320 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term LDH65_10330 PF00155 Aminotransferase class I and II LDH65_10330 PF00392 Bacterial regulatory proteins, gntR family LDH65_10335 PF00202 Aminotransferase class-III LDH65_10340 PF04958 Arginine N-succinyltransferase beta subunit LDH65_10345 PF00171 Aldehyde dehydrogenase family LDH65_10350 PF04996 Succinylarginine dihydrolase LDH65_10355 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family LDH65_10365 PF00665 Integrase core domain LDH65_10365 PF02796 Helix-turn-helix domain of resolvase LDH65_10370 PF01695 IstB-like ATP binding protein LDH65_10385 PF01979 Amidohydrolase family LDH65_10390 PF00392 Bacterial regulatory proteins, gntR family LDH65_10390 PF07702 UTRA domain LDH65_10395 PF01979 Amidohydrolase family LDH65_10400 PF05962 HutD LDH65_10410 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III LDH65_10410 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal LDH65_10415 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III LDH65_10415 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal LDH65_10420 PF01370 NAD dependent epimerase/dehydratase family LDH65_10465 PF00872 Transposase, Mutator family LDH65_10485 PF08242 Methyltransferase domain LDH65_10530 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LDH65_10530 PF00512 His Kinase A (phospho-acceptor) domain LDH65_10530 PF00672 HAMP domain LDH65_10535 PF00072 Response regulator receiver domain LDH65_10535 PF00486 Transcriptional regulatory protein, C terminal LDH65_10540 PF02129 X-Pro dipeptidyl-peptidase (S15 family) LDH65_10580 PF01926 50S ribosome-binding GTPase LDH65_10580 PF06071 Protein of unknown function (DUF933) LDH65_10585 PF01195 Peptidyl-tRNA hydrolase LDH65_10590 PF10762 Protein of unknown function (DUF2583) LDH65_10595 PF14572 Phosphoribosyl synthetase-associated domain LDH65_10595 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase LDH65_10600 PF08544 GHMP kinases C terminal LDH65_10600 PF00288 GHMP kinases N terminal domain LDH65_10605 PF03550 Outer membrane lipoprotein LolB LDH65_10610 PF01488 Shikimate / quinate 5-dehydrogenase LDH65_10610 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain LDH65_10610 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain LDH65_10615 PF03462 PCRF domain LDH65_10615 PF00472 RF-1 domain LDH65_10620 PF13847 Methyltransferase domain LDH65_10620 PF17827 PrmC N-terminal domain LDH65_10625 PF04247 Invasion gene expression up-regulator, SirB LDH65_10630 PF13369 Transglutaminase-like superfamily LDH65_10635 PF00793 DAHP synthetase I family LDH65_10640 PF01740 STAS domain LDH65_10640 PF00916 Sulfate permease family LDH65_10650 PF03009 Glycerophosphoryl diester phosphodiesterase family LDH65_10660 PF00528 Binding-protein-dependent transport system inner membrane component LDH65_10665 PF00528 Binding-protein-dependent transport system inner membrane component LDH65_10670 PF08402 TOBE domain LDH65_10670 PF00005 ABC transporter LDH65_10685 PF03009 Glycerophosphoryl diester phosphodiesterase family LDH65_10690 PF00480 ROK family LDH65_10690 PF01325 Iron dependent repressor, N-terminal DNA binding domain LDH65_10700 PF02811 PHP domain LDH65_10705 PF02613 Nitrate reductase delta subunit LDH65_10710 PF07273 Protein of unknown function (DUF1439) LDH65_10715 PF07690 Major Facilitator Superfamily LDH65_10720 PF13302 Acetyltransferase (GNAT) domain LDH65_10725 PF04337 Protein of unknown function, DUF480 LDH65_10730 PF03023 Lipid II flippase MurJ LDH65_10735 PF08479 POTRA domain, ShlB-type LDH65_10735 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB LDH65_10735 PF17287 POTRA domain LDH65_10740 PF05860 haemagglutination activity domain LDH65_10740 PF13332 Hemagglutinin repeat LDH65_10745 PF05746 DALR anticodon binding domain LDH65_10745 PF03485 Arginyl tRNA synthetase N terminal domain LDH65_10745 PF00750 tRNA synthetases class I (R) LDH65_10750 PF06185 YecM protein LDH65_10755 PF03932 CutC family LDH65_10760 PF08003 Protein of unknown function (DUF1698) LDH65_10765 PF13649 Methyltransferase domain LDH65_10770 PF01124 MAPEG family LDH65_10775 PF01904 Protein of unknown function DUF72 LDH65_10780 PF01336 OB-fold nucleic acid binding domain LDH65_10780 PF00152 tRNA synthetases class II (D, K and N) LDH65_10780 PF02938 GAD domain LDH65_10785 PF00293 NUDIX domain LDH65_10790 PF01709 Transcriptional regulator LDH65_10795 PF02075 Crossover junction endodeoxyribonuclease RuvC LDH65_10800 PF01330 RuvA N terminal domain LDH65_10800 PF07499 RuvA, C-terminal domain LDH65_10805 PF05491 RuvB C-terminal winged helix domain LDH65_10805 PF05496 Holliday junction DNA helicase RuvB P-loop domain LDH65_10805 PF17864 RuvB AAA lid domain LDH65_10810 PF00950 ABC 3 transport family LDH65_10815 PF00005 ABC transporter LDH65_10820 PF01297 Zinc-uptake complex component A periplasmic LDH65_10825 PF01476 LysM domain LDH65_10825 PF08525 Opacity-associated protein A N-terminal motif LDH65_10825 PF01551 Peptidase family M23 LDH65_10830 PF03279 Bacterial lipid A biosynthesis acyltransferase LDH65_10840 PF02887 Pyruvate kinase, alpha/beta domain LDH65_10840 PF00224 Pyruvate kinase, barrel domain LDH65_10845 PF01380 SIS domain LDH65_10845 PF01418 Helix-turn-helix domain, rpiR family LDH65_10850 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain LDH65_10850 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain LDH65_10855 PF01081 KDPG and KHG aldolase LDH65_10860 PF00893 Small Multidrug Resistance protein LDH65_10865 PF00893 Small Multidrug Resistance protein LDH65_10870 PF01042 Endoribonuclease L-PSP LDH65_10875 PF04851 Type III restriction enzyme, res subunit LDH65_10875 PF13307 Helicase C-terminal domain LDH65_10880 PF00814 Glycoprotease family LDH65_10885 PF03843 Outer membrane lipoprotein Slp family LDH65_10895 PF00501 AMP-binding enzyme LDH65_10895 PF13193 AMP-binding enzyme C-terminal domain LDH65_10900 PF01612 3'-5' exonuclease LDH65_10900 PF00570 HRDC domain LDH65_10905 PF03776 Septum formation topological specificity factor MinE LDH65_10910 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain LDH65_10915 PF03775 Septum formation inhibitor MinC, C-terminal domain LDH65_10915 PF05209 Septum formation inhibitor MinC, N-terminal domain LDH65_10920 PF05166 YcgL domain LDH65_10930 PF13406 Transglycosylase SLT domain LDH65_10935 PF01557 Fumarylacetoacetate (FAA) hydrolase family LDH65_10940 PF03692 Putative zinc- or iron-chelating domain LDH65_10945 PF00589 Phage integrase family LDH65_10945 PF12167 Arm DNA-binding domain LDH65_10950 PF00665 Integrase core domain LDH65_10950 PF02796 Helix-turn-helix domain of resolvase LDH65_10955 PF01695 IstB-like ATP binding protein LDH65_10970 PF05772 NinB protein LDH65_10980 PF06530 Phage antitermination protein Q LDH65_11050 PF00872 Transposase, Mutator family LDH65_11210 PF02413 Caudovirales tail fibre assembly protein, lambda gpK LDH65_11215 PF00872 Transposase, Mutator family LDH65_11225 PF00266 Aminotransferase class-V LDH65_11245 PF02600 Disulfide bond formation protein DsbB LDH65_11250 PF06450 Bacterial Na+/H+ antiporter B (NhaB) LDH65_11255 PF00392 Bacterial regulatory proteins, gntR family LDH65_11255 PF07840 FadR C-terminal domain LDH65_11260 PF04293 SpoVR like protein LDH65_11265 PF01266 FAD dependent oxidoreductase LDH65_11275 PF05726 Pirin C-terminal cupin domain LDH65_11275 PF02678 Pirin LDH65_11280 PF03466 LysR substrate binding domain LDH65_11280 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LDH65_11290 PF04285 Protein of unknown function (DUF444) LDH65_11295 PF06798 PrkA serine protein kinase C-terminal domain LDH65_11295 PF08298 PrkA AAA domain LDH65_11300 PF06629 MltA-interacting protein MipA LDH65_11305 PF01263 Aldose 1-epimerase LDH65_11310 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain LDH65_11310 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain LDH65_11315 PF01641 SelR domain LDH65_11320 PF07023 Protein of unknown function (DUF1315) LDH65_11325 PF00857 Isochorismatase family LDH65_11330 PF00710 Asparaginase, N-terminal LDH65_11330 PF17763 Glutaminase/Asparaginase C-terminal domain LDH65_11335 PF01343 Peptidase family S49 LDH65_11340 PF00881 Nitroreductase family LDH65_11345 PF00586 AIR synthase related protein, N-terminal domain LDH65_11345 PF02769 AIR synthase related protein, C-terminal domain LDH65_11350 PF01751 Toprim domain LDH65_11350 PF01131 DNA topoisomerase LDH65_11355 PF07383 Protein of unknown function (DUF1496) LDH65_11360 PF00293 NUDIX domain LDH65_11365 PF03372 Endonuclease/Exonuclease/phosphatase family LDH65_11370 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LDH65_11370 PF03466 LysR substrate binding domain LDH65_11390 PF00872 Transposase, Mutator family LDH65_11395 PF01842 ACT domain LDH65_11395 PF00551 Formyl transferase LDH65_11400 PF02810 SEC-C motif LDH65_11405 PF00072 Response regulator receiver domain LDH65_11410 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain LDH65_11410 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain LDH65_11410 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain LDH65_11415 PF00816 H-NS histone family LDH65_11420 PF00265 Thymidine kinase LDH65_11425 PF01695 IstB-like ATP binding protein LDH65_11430 PF02796 Helix-turn-helix domain of resolvase LDH65_11430 PF00665 Integrase core domain LDH65_11435 PF00171 Aldehyde dehydrogenase family LDH65_11435 PF00465 Iron-containing alcohol dehydrogenase LDH65_11440 PF01914 MarC family integral membrane protein LDH65_11445 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle LDH65_11450 PF00528 Binding-protein-dependent transport system inner membrane component LDH65_11455 PF00528 Binding-protein-dependent transport system inner membrane component LDH65_11455 PF12911 N-terminal TM domain of oligopeptide transport permease C LDH65_11460 PF08352 Oligopeptide/dipeptide transporter, C-terminal region LDH65_11460 PF00005 ABC transporter LDH65_11465 PF08352 Oligopeptide/dipeptide transporter, C-terminal region LDH65_11465 PF00005 ABC transporter LDH65_11475 PF04269 Protein of unknown function, DUF440 LDH65_11480 PF13396 Phospholipase_D-nuclease N-terminal LDH65_11480 PF13091 PLD-like domain LDH65_11495 PF13505 Outer membrane protein beta-barrel domain LDH65_11510 PF03795 YCII-related domain LDH65_11515 PF03544 Gram-negative bacterial TonB protein C-terminal LDH65_11520 PF00872 Transposase, Mutator family LDH65_11525 PF03061 Thioesterase superfamily LDH65_11530 PF04279 Intracellular septation protein A LDH65_11555 PF03922 OmpW family LDH65_11565 PF00290 Tryptophan synthase alpha chain LDH65_11570 PF00291 Pyridoxal-phosphate dependent enzyme LDH65_11575 PF00218 Indole-3-glycerol phosphate synthase LDH65_11575 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase LDH65_11585 PF00425 chorismate binding enzyme LDH65_11585 PF04715 Anthranilate synthase component I, N terminal region LDH65_11595 PF02811 PHP domain LDH65_11600 PF01300 Telomere recombination LDH65_11605 PF01479 S4 domain LDH65_11605 PF00849 RNA pseudouridylate synthase LDH65_11610 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP LDH65_11615 PF00106 short chain dehydrogenase LDH65_11620 PF01343 Peptidase family S49 LDH65_11620 PF08496 Peptidase family S49 N-terminal LDH65_11625 PF10692 Protein of unknown function (DUF2498) LDH65_11635 PF08272 Topoisomerase I zinc-ribbon-like LDH65_11635 PF01131 DNA topoisomerase LDH65_11635 PF01751 Toprim domain LDH65_11635 PF01396 Topoisomerase DNA binding C4 zinc finger LDH65_11640 PF03466 LysR substrate binding domain LDH65_11640 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LDH65_11650 PF00330 Aconitase family (aconitate hydratase) LDH65_11650 PF00694 Aconitase C-terminal domain LDH65_11655 PF00925 GTP cyclohydrolase II LDH65_11660 PF01569 PAP2 superfamily LDH65_11665 PF06305 Lipopolysaccharide assembly protein A domain LDH65_11670 PF18073 Rubredoxin metal binding domain LDH65_11680 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family LDH65_11685 PF01253 Translation initiation factor SUI1 LDH65_11690 PF05433 Glycine zipper 2TM domain LDH65_11695 PF00596 Class II Aldolase and Adducin N-terminal domain LDH65_11705 PF00923 Transaldolase/Fructose-6-phosphate aldolase LDH65_11710 PF04328 Selenoprotein, putative LDH65_11715 PF02554 Carbon starvation protein CstA LDH65_11715 PF13722 5TM C-terminal transporter carbon starvation CstA LDH65_11720 PF00575 S1 RNA binding domain LDH65_11720 PF17876 Cold shock domain LDH65_11720 PF00773 RNB domain LDH65_11720 PF08206 Ribonuclease B OB domain LDH65_11725 PF07690 Major Facilitator Superfamily LDH65_11730 PF01370 NAD dependent epimerase/dehydratase family LDH65_11735 PF00633 Helix-hairpin-helix motif LDH65_11735 PF00730 HhH-GPD superfamily base excision DNA repair protein LDH65_11735 PF10576 Iron-sulfur binding domain of endonuclease III LDH65_11740 PF02508 Rnf-Nqr subunit, membrane protein LDH65_11745 PF04205 FMN-binding domain LDH65_11750 PF03116 NQR2, RnfD, RnfE family LDH65_11755 PF06445 GyrI-like small molecule binding domain LDH65_11755 PF12833 Helix-turn-helix domain LDH65_11760 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit LDH65_11760 PF13237 4Fe-4S dicluster domain LDH65_11760 PF13375 RnfC Barrel sandwich hybrid domain LDH65_11760 PF10531 SLBB domain LDH65_11765 PF04060 Putative Fe-S cluster LDH65_11770 PF02508 Rnf-Nqr subunit, membrane protein LDH65_11775 PF10754 Protein of unknown function (DUF2569) LDH65_11780 PF00005 ABC transporter LDH65_11780 PF03412 Peptidase C39 family LDH65_11780 PF00664 ABC transporter transmembrane region LDH65_11785 PF00664 ABC transporter transmembrane region LDH65_11785 PF00005 ABC transporter LDH65_11790 PF13533 Biotin-lipoyl like LDH65_11800 PF00664 ABC transporter transmembrane region LDH65_11800 PF00005 ABC transporter LDH65_11800 PF03412 Peptidase C39 family LDH65_11805 PF11762 L-arabinose isomerase C-terminal domain LDH65_11805 PF02610 L-arabinose isomerase LDH65_11810 PF02782 FGGY family of carbohydrate kinases, C-terminal domain LDH65_11815 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family LDH65_11820 PF00005 ABC transporter LDH65_11825 PF02653 Branched-chain amino acid transport system / permease component LDH65_11830 PF02311 AraC-like ligand binding domain LDH65_11830 PF12833 Helix-turn-helix domain LDH65_11835 PF01408 Oxidoreductase family, NAD-binding Rossmann fold LDH65_11835 PF02894 Oxidoreductase family, C-terminal alpha/beta domain LDH65_11840 PF13593 SBF-like CPA transporter family (DUF4137) LDH65_11850 PF06097 Bacterial protein of unknown function (DUF945) LDH65_11855 PF01238 Phosphomannose isomerase type I LDH65_11860 PF10415 Fumarase C C-terminus LDH65_11860 PF00206 Lyase LDH65_11865 PF05472 DNA replication terminus site-binding protein (Ter protein) LDH65_11875 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LDH65_11875 PF03466 LysR substrate binding domain LDH65_11880 PF00480 ROK family LDH65_11890 PF00654 Voltage gated chloride channel LDH65_11895 PF00356 Bacterial regulatory proteins, lacI family LDH65_11905 PF13407 Periplasmic binding protein domain LDH65_11910 PF09084 NMT1/THI5 like LDH65_11915 PF00528 Binding-protein-dependent transport system inner membrane component LDH65_11920 PF00005 ABC transporter LDH65_11955 PF00205 Thiamine pyrophosphate enzyme, central domain LDH65_11955 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain LDH65_11955 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain LDH65_11960 PF01842 ACT domain LDH65_11965 PF13419 Haloacid dehalogenase-like hydrolase LDH65_11980 PF00245 Alkaline phosphatase LDH65_11985 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain LDH65_11985 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain LDH65_11990 PF00027 Cyclic nucleotide-binding domain LDH65_11990 PF13545 Crp-like helix-turn-helix domain LDH65_11995 PF00582 Universal stress protein family LDH65_12000 PF02233 NAD(P) transhydrogenase beta subunit LDH65_12005 PF05222 Alanine dehydrogenase/PNT, N-terminal domain LDH65_12005 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch LDH65_12005 PF01262 Alanine dehydrogenase/PNT, C-terminal domain LDH65_12015 PF07338 Protein of unknown function (DUF1471) LDH65_12020 PF13520 Amino acid permease LDH65_12030 PF00072 Response regulator receiver domain LDH65_12030 PF00486 Transcriptional regulatory protein, C terminal LDH65_12035 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LDH65_12035 PF00512 His Kinase A (phospho-acceptor) domain LDH65_12035 PF00672 HAMP domain LDH65_12040 PF02074 Carboxypeptidase Taq (M32) metallopeptidase LDH65_12050 PF14431 YwqJ-like deaminase LDH65_12050 PF18807 Tripartite Tc toxins repeat LDH65_12065 PF04264 YceI-like domain LDH65_12070 PF01292 Prokaryotic cytochrome b561 LDH65_12080 PF00089 Trypsin LDH65_12095 PF11898 Domain of unknown function (DUF3418) LDH65_12095 PF04408 Helicase associated domain (HA2) LDH65_12095 PF00271 Helicase conserved C-terminal domain LDH65_12095 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold LDH65_12095 PF00270 DEAD/DEAH box helicase LDH65_12100 PF02525 Flavodoxin-like fold LDH65_12105 PF00325 Bacterial regulatory proteins, crp family LDH65_12105 PF04198 Putative sugar-binding domain LDH65_12110 PF01232 Mannitol dehydrogenase Rossmann domain LDH65_12110 PF08125 Mannitol dehydrogenase C-terminal domain LDH65_12115 PF07027 Protein of unknown function (DUF1318) LDH65_12120 PF13617 YnbE-like lipoprotein LDH65_12125 PF11739 Dicarboxylate transport LDH65_12130 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain LDH65_12130 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain LDH65_12135 PF03724 META domain LDH65_12140 PF03891 Domain of unknown function (DUF333) LDH65_12145 PF02308 MgtC family LDH65_12150 PF00893 Small Multidrug Resistance protein LDH65_12155 PF10371 Domain of unknown function LDH65_12155 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II LDH65_12155 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase LDH65_12155 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg LDH65_12155 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain LDH65_12160 PF01171 PP-loop family LDH65_12165 PF07859 alpha/beta hydrolase fold LDH65_12175 PF01544 CorA-like Mg2+ transporter protein LDH65_12180 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle LDH65_12185 PF00246 Zinc carboxypeptidase LDH65_12190 PF13378 Enolase C-terminal domain-like LDH65_12190 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain LDH65_12195 PF01695 IstB-like ATP binding protein LDH65_12200 PF02796 Helix-turn-helix domain of resolvase LDH65_12200 PF00665 Integrase core domain LDH65_12210 PF01797 Transposase IS200 like LDH65_12215 PF18024 Helix-turn-helix domain LDH65_12215 PF00158 Sigma-54 interaction domain LDH65_12220 PF09722 Protein of unknown function (DUF2384) LDH65_12225 PF08808 RES domain LDH65_12230 PF05128 Domain of unknown function (DUF697) LDH65_12235 PF04317 YcjX-like family, DUF463 LDH65_12245 PF04024 PspC domain LDH65_12250 PF06667 Phage shock protein B LDH65_12255 PF04012 PspA/IM30 family LDH65_12260 PF02954 Bacterial regulatory protein, Fis family LDH65_12260 PF00158 Sigma-54 interaction domain LDH65_12270 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle LDH65_12275 PF00528 Binding-protein-dependent transport system inner membrane component LDH65_12280 PF12911 N-terminal TM domain of oligopeptide transport permease C LDH65_12280 PF00528 Binding-protein-dependent transport system inner membrane component LDH65_12285 PF00005 ABC transporter LDH65_12285 PF08352 Oligopeptide/dipeptide transporter, C-terminal region LDH65_12290 PF00005 ABC transporter LDH65_12300 PF00854 POT family LDH65_12305 PF04893 Yip1 domain LDH65_12310 PF11656 YjbD family (DUF3811) LDH65_12315 PF00043 Glutathione S-transferase, C-terminal domain LDH65_12315 PF02798 Glutathione S-transferase, N-terminal domain LDH65_12320 PF08543 Phosphomethylpyrimidine kinase LDH65_12325 PF01479 S4 domain LDH65_12325 PF00579 tRNA synthetases class I (W and Y) LDH65_12330 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region LDH65_12330 PF01243 Pyridoxamine 5'-phosphate oxidase LDH65_12335 PF09864 Membrane-bound lysozyme-inhibitor of c-type lysozyme LDH65_12340 PF03702 Anhydro-N-acetylmuramic acid kinase LDH65_12345 PF05433 Glycine zipper 2TM domain LDH65_12350 PF01047 MarR family LDH65_12355 PF00248 Aldo/keto reductase family LDH65_12360 PF06945 Protein of unknown function (DUF1289) LDH65_12365 PF00884 Sulfatase LDH65_12365 PF08019 Phosphoethanolamine transferase EptA/EptB LDH65_12370 PF16925 Tetracyclin repressor-like, C-terminal domain LDH65_12370 PF00440 Bacterial regulatory proteins, tetR family LDH65_12375 PF00724 NADH:flavin oxidoreductase / NADH oxidase family LDH65_12380 PF18807 Tripartite Tc toxins repeat LDH65_12380 PF14431 YwqJ-like deaminase LDH65_12385 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily LDH65_12390 PF00929 Exonuclease LDH65_12400 PF00462 Glutaredoxin LDH65_12405 PF00877 NlpC/P60 family LDH65_12410 PF02777 Iron/manganese superoxide dismutases, C-terminal domain LDH65_12410 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain LDH65_12420 PF00356 Bacterial regulatory proteins, lacI family LDH65_12425 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LDH65_12425 PF03466 LysR substrate binding domain LDH65_12430 PF07690 Major Facilitator Superfamily LDH65_12440 PF00677 Lumazine binding domain LDH65_12445 PF01554 MatE LDH65_12460 PF00224 Pyruvate kinase, barrel domain LDH65_12460 PF02887 Pyruvate kinase, alpha/beta domain LDH65_12465 PF04728 Lipoprotein leucine-zipper LDH65_12475 PF02796 Helix-turn-helix domain of resolvase LDH65_12475 PF00665 Integrase core domain LDH65_12480 PF01695 IstB-like ATP binding protein LDH65_12485 PF03734 L,D-transpeptidase catalytic domain LDH65_12485 PF01476 LysM domain LDH65_12485 PF17969 L,D-transpeptidase C-terminal domain LDH65_12490 PF02657 Fe-S metabolism associated domain LDH65_12495 PF00266 Aminotransferase class-V LDH65_12500 PF01458 Uncharacterized protein family (UPF0051) LDH65_12505 PF00005 ABC transporter LDH65_12510 PF01458 Uncharacterized protein family (UPF0051) LDH65_12515 PF01521 Iron-sulphur cluster biosynthesis LDH65_12520 PF03061 Thioesterase superfamily LDH65_12525 PF01565 FAD binding domain LDH65_12525 PF13183 4Fe-4S dicluster domain LDH65_12525 PF02913 FAD linked oxidases, C-terminal domain LDH65_12530 PF01594 AI-2E family transporter LDH65_12540 PF00391 PEP-utilising enzyme, mobile domain LDH65_12540 PF02896 PEP-utilising enzyme, TIM barrel domain LDH65_12540 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain LDH65_12545 PF03618 Kinase/pyrophosphorylase LDH65_12550 PF00793 DAHP synthetase I family LDH65_12560 PF10437 Bacterial lipoate protein ligase C-terminus LDH65_12560 PF03099 Biotin/lipoate A/B protein ligase family LDH65_12565 PF00877 NlpC/P60 family LDH65_12580 PF00892 EamA-like transporter family LDH65_12585 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase LDH65_12590 PF01522 Polysaccharide deacetylase LDH65_12595 PF01370 NAD dependent epimerase/dehydratase family LDH65_12595 PF00551 Formyl transferase LDH65_12595 PF02911 Formyl transferase, C-terminal domain LDH65_12600 PF00535 Glycosyl transferase family 2 LDH65_12605 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family LDH65_12610 PF00005 ABC transporter LDH65_12615 PF00255 Glutathione peroxidase LDH65_12620 PF01032 FecCD transport family LDH65_12630 PF00216 Bacterial DNA-binding protein LDH65_12635 PF01588 Putative tRNA binding domain LDH65_12635 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain LDH65_12635 PF03483 B3/4 domain LDH65_12635 PF03147 Ferredoxin-fold anticodon binding domain LDH65_12635 PF03484 tRNA synthetase B5 domain LDH65_12640 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain LDH65_12640 PF01409 tRNA synthetases class II core domain (F) LDH65_12650 PF00453 Ribosomal protein L20 LDH65_12655 PF01632 Ribosomal protein L35 LDH65_12660 PF00707 Translation initiation factor IF-3, C-terminal domain LDH65_12660 PF05198 Translation initiation factor IF-3, N-terminal domain LDH65_12665 PF03129 Anticodon binding domain LDH65_12665 PF02824 TGS domain LDH65_12665 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain LDH65_12665 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) LDH65_12670 PF13619 KTSC domain LDH65_12680 PF01914 MarC family integral membrane protein LDH65_12685 PF01464 Transglycosylase SLT domain LDH65_12690 PF01297 Zinc-uptake complex component A periplasmic LDH65_12695 PF00005 ABC transporter LDH65_12700 PF00950 ABC 3 transport family LDH65_12705 PF00950 ABC 3 transport family LDH65_12715 PF03881 Fructosamine kinase LDH65_12720 PF14002 YniB-like protein LDH65_12725 PF13419 Haloacid dehalogenase-like hydrolase LDH65_12730 PF00872 Transposase, Mutator family LDH65_12735 PF01306 LacY proton/sugar symporter LDH65_12740 PF16874 Glycosyl hydrolase family 36 C-terminal domain LDH65_12740 PF16875 Glycosyl hydrolase family 36 N-terminal domain LDH65_12750 PF01648 4'-phosphopantetheinyl transferase superfamily LDH65_12750 PF17837 4'-phosphopantetheinyl transferase N-terminal domain LDH65_12755 PF03480 Bacterial extracellular solute-binding protein, family 7 LDH65_12765 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component LDH65_12770 PF00196 Bacterial regulatory proteins, luxR family LDH65_12770 PF00072 Response regulator receiver domain LDH65_12780 PF09831 Uncharacterized protein conserved in bacteria (DUF2058) LDH65_12790 PF01522 Polysaccharide deacetylase LDH65_12800 PF01554 MatE LDH65_12805 PF00764 Arginosuccinate synthase LDH65_12810 PF01070 FMN-dependent dehydrogenase LDH65_12815 PF13378 Enolase C-terminal domain-like LDH65_12815 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain LDH65_12820 PF01557 Fumarylacetoacetate (FAA) hydrolase family LDH65_12830 PF04134 Protein of unknown function, DUF393 LDH65_12835 PF07690 Major Facilitator Superfamily LDH65_12840 PF02369 Bacterial Ig-like domain (group 1) LDH65_12840 PF11924 Inverse autotransporter, beta-domain LDH65_12840 PF09134 Invasin, domain 3 LDH65_12850 PF01695 IstB-like ATP binding protein LDH65_12855 PF00665 Integrase core domain LDH65_12855 PF02796 Helix-turn-helix domain of resolvase LDH65_12865 PF04363 Protein of unknown function (DUF496) LDH65_12875 PF08411 Exonuclease C-terminal LDH65_12875 PF00929 Exonuclease LDH65_12885 PF13520 Amino acid permease LDH65_12890 PF00465 Iron-containing alcohol dehydrogenase LDH65_12895 PF00005 ABC transporter LDH65_12900 PF00005 ABC transporter LDH65_12905 PF02653 Branched-chain amino acid transport system / permease component LDH65_12915 PF01370 NAD dependent epimerase/dehydratase family LDH65_12925 PF01634 ATP phosphoribosyltransferase LDH65_12925 PF08029 HisG, C-terminal domain LDH65_12930 PF00815 Histidinol dehydrogenase LDH65_12935 PF00155 Aminotransferase class I and II LDH65_12940 PF00475 Imidazoleglycerol-phosphate dehydratase LDH65_12945 PF00117 Glutamine amidotransferase class-I LDH65_12950 PF00977 Histidine biosynthesis protein LDH65_12955 PF00977 Histidine biosynthesis protein LDH65_12960 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase LDH65_12960 PF01502 Phosphoribosyl-AMP cyclohydrolase LDH65_12965 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain LDH65_12965 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase LDH65_12970 PF00483 Nucleotidyl transferase LDH65_12975 PF00483 Nucleotidyl transferase LDH65_12980 PF06276 Ferric iron reductase FhuF-like transporter LDH65_12980 PF04183 IucA / IucC family LDH65_12985 PF07715 TonB-dependent Receptor Plug Domain LDH65_12985 PF07660 Secretin and TonB N terminus short domain LDH65_12985 PF00593 TonB dependent receptor LDH65_12990 PF01497 Periplasmic binding protein LDH65_12995 PF01032 FecCD transport family LDH65_13000 PF01032 FecCD transport family LDH65_13005 PF00005 ABC transporter LDH65_13010 PF04183 IucA / IucC family LDH65_13010 PF06276 Ferric iron reductase FhuF-like transporter LDH65_13020 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) LDH65_13025 PF00282 Pyridoxal-dependent decarboxylase conserved domain LDH65_13030 PF06276 Ferric iron reductase FhuF-like transporter LDH65_13030 PF11575 FhuF 2Fe-2S C-terminal domain LDH65_13035 PF00571 CBS domain LDH65_13035 PF03471 Transporter associated domain LDH65_13035 PF03741 Integral membrane protein TerC family LDH65_13040 PF05170 AsmA family LDH65_13045 PF00692 dUTPase LDH65_13050 PF00485 Phosphoribulokinase / Uridine kinase family LDH65_13055 PF10609 NUBPL iron-transfer P-loop NTPase LDH65_13060 PF09334 tRNA synthetases class I (M) LDH65_13060 PF01588 Putative tRNA binding domain LDH65_13065 PF01797 Transposase IS200 like LDH65_13085 PF07690 Major Facilitator Superfamily LDH65_13090 PF03788 LrgA family LDH65_13095 PF04172 LrgB-like family LDH65_13100 PF08211 Cytidine and deoxycytidylate deaminase zinc-binding region LDH65_13100 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region LDH65_13105 PF00390 Malic enzyme, N-terminal domain LDH65_13105 PF03949 Malic enzyme, NAD binding domain LDH65_13110 PF02698 DUF218 domain LDH65_13115 PF02653 Branched-chain amino acid transport system / permease component LDH65_13120 PF00005 ABC transporter LDH65_13125 PF13407 Periplasmic binding protein domain LDH65_13130 PF04235 Protein of unknown function (DUF418) LDH65_13135 PF01227 GTP cyclohydrolase I LDH65_13140 PF06779 Uncharacterised MFS-type transporter YbfB LDH65_13145 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LDH65_13145 PF03466 LysR substrate binding domain LDH65_13150 PF00107 Zinc-binding dehydrogenase LDH65_13150 PF08240 Alcohol dehydrogenase GroES-like domain LDH65_13155 PF00756 Putative esterase LDH65_13170 PF13533 Biotin-lipoyl like LDH65_13175 PF00005 ABC transporter LDH65_13185 PF00994 Probable molybdopterin binding domain LDH65_13185 PF03453 MoeA N-terminal region (domain I and II) LDH65_13185 PF03454 MoeA C-terminal region (domain IV) LDH65_13190 PF00899 ThiF family LDH65_13195 PF00872 Transposase, Mutator family LDH65_13205 PF00005 ABC transporter LDH65_13205 PF12848 ABC transporter LDH65_13295 PF13296 Putative type VI secretion system Rhs element Vgr LDH65_13295 PF10106 Uncharacterized protein conserved in bacteria (DUF2345) LDH65_13295 PF04717 Type VI secretion system, phage-baseplate injector LDH65_13300 PF10431 C-terminal, D2-small domain, of ClpB protein LDH65_13300 PF17871 AAA lid domain LDH65_13300 PF00004 ATPase family associated with various cellular activities (AAA) LDH65_13300 PF07724 AAA domain (Cdc48 subfamily) LDH65_13310 PF00691 OmpA family LDH65_13310 PF05736 OprF membrane domain LDH65_13325 PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath LDH65_13335 PF00698 Acyl transferase domain LDH65_13340 PF00550 Phosphopantetheine attachment site LDH65_13355 PF00378 Enoyl-CoA hydratase/isomerase LDH65_13365 PF08540 Hydroxymethylglutaryl-coenzyme A synthase C terminal LDH65_13365 PF01154 Hydroxymethylglutaryl-coenzyme A synthase N terminal LDH65_13375 PF00109 Beta-ketoacyl synthase, N-terminal domain LDH65_13375 PF02801 Beta-ketoacyl synthase, C-terminal domain LDH65_13380 PF07977 FabA-like domain LDH65_13395 PF08031 Berberine and berberine like LDH65_13395 PF01565 FAD binding domain LDH65_13415 PF04358 DsrC like protein LDH65_13420 PF00708 Acylphosphatase LDH65_13425 PF10672 S-adenosylmethionine-dependent methyltransferase LDH65_13425 PF17785 PUA-like domain LDH65_13430 PF08755 Hemimethylated DNA-binding protein YccV like LDH65_13435 PF13380 CoA binding domain LDH65_13440 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) LDH65_13445 PF02142 MGS-like domain LDH65_13450 PF12462 DNA helicase IV / RNA helicase N terminal LDH65_13450 PF00580 UvrD/REP helicase N-terminal domain LDH65_13450 PF13361 UvrD-like helicase C-terminal domain LDH65_13455 PF03733 Inner membrane component domain LDH65_13460 PF12805 FUSC-like inner membrane protein yccS LDH65_13465 PF04994 TfoX C-terminal domain LDH65_13465 PF04993 TfoX N-terminal domain LDH65_13470 PF03846 Cell division inhibitor SulA LDH65_13475 PF00691 OmpA family LDH65_13475 PF01389 OmpA-like transmembrane domain LDH65_13480 PF01797 Transposase IS200 like LDH65_13485 PF06303 MatP N-terminal domain LDH65_13485 PF17414 MatP C-terminal ribbon-helix-helix domain LDH65_13490 PF13654 AAA domain LDH65_13490 PF05362 Lon protease (S16) C-terminal proteolytic domain LDH65_13495 PF07977 FabA-like domain LDH65_13510 PF00665 Integrase core domain LDH65_13510 PF02796 Helix-turn-helix domain of resolvase LDH65_13515 PF01695 IstB-like ATP binding protein LDH65_13525 PF01797 Transposase IS200 like LDH65_13530 PF04957 Ribosome modulation factor LDH65_13535 PF03886 ABC-type transport auxiliary lipoprotein component LDH65_13550 PF02470 MlaD protein LDH65_13555 PF04403 Paraquat-inducible protein A LDH65_13560 PF16326 ABC transporter C-terminal domain LDH65_13560 PF00005 ABC transporter LDH65_13560 PF12848 ABC transporter LDH65_13565 PF10672 S-adenosylmethionine-dependent methyltransferase LDH65_13565 PF02926 THUMP domain LDH65_13565 PF01170 Putative RNA methylase family UPF0020 LDH65_13570 PF00111 2Fe-2S iron-sulfur cluster binding domain LDH65_13570 PF03473 MOSC domain LDH65_13570 PF03476 MOSC N-terminal beta barrel domain LDH65_13575 PF07126 Cell-division protein ZapC LDH65_13580 PF01180 Dihydroorotate dehydrogenase LDH65_13585 PF11940 Domain of unknown function (DUF3458) Ig-like fold LDH65_13585 PF01433 Peptidase family M1 domain LDH65_13585 PF17432 Domain of unknown function (DUF3458_C) ARM repeats LDH65_13590 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family LDH65_13590 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain LDH65_13595 PF00152 tRNA synthetases class II (D, K and N) LDH65_13595 PF01336 OB-fold nucleic acid binding domain LDH65_13600 PF00267 Gram-negative porin LDH65_13605 PF00155 Aminotransferase class I and II LDH65_13615 PF00753 Metallo-beta-lactamase superfamily LDH65_13620 PF05951 Bacterial protein of unknown function (DUF882) LDH65_13625 PF01471 Putative peptidoglycan binding domain LDH65_13625 PF03734 L,D-transpeptidase catalytic domain LDH65_13635 PF04310 MukB N-terminal LDH65_13635 PF16330 MukB hinge domain LDH65_13640 PF04288 MukE-like family LDH65_13645 PF17192 MukF middle domain LDH65_13645 PF17193 MukF C-terminal domain LDH65_13645 PF03882 MukF winged-helix domain LDH65_13650 PF13847 Methyltransferase domain LDH65_13655 PF01636 Phosphotransferase enzyme family LDH65_13660 PF02348 Cytidylyltransferase LDH65_13665 PF03966 Trm112p-like protein LDH65_13670 PF00313 'Cold-shock' DNA-binding domain LDH65_13675 PF07063 Domain of unknown function (DUF1338) LDH65_13680 PF02606 Tetraacyldisaccharide-1-P 4'-kinase LDH65_13685 PF00005 ABC transporter LDH65_13685 PF00664 ABC transporter transmembrane region LDH65_13690 PF00753 Metallo-beta-lactamase superfamily LDH65_13690 PF03772 Competence protein LDH65_13695 PF00216 Bacterial DNA-binding protein LDH65_13700 PF00575 S1 RNA binding domain LDH65_13705 PF02224 Cytidylate kinase LDH65_13710 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) LDH65_13715 PF00266 Aminotransferase class-V LDH65_13725 PF13018 Extended Signal Peptide of Type V secretion system LDH65_13725 PF03895 YadA-like membrane anchor domain LDH65_13725 PF05658 Head domain of trimeric autotransporter adhesin LDH65_13725 PF05662 Coiled stalk of trimeric autotransporter adhesin LDH65_13725 PF13018 Extended Signal Peptide of Type V secretion system LDH65_13725 PF03895 YadA-like membrane anchor domain LDH65_13725 PF05658 Head domain of trimeric autotransporter adhesin LDH65_13725 PF05662 Coiled stalk of trimeric autotransporter adhesin LDH65_13730 PF00710 Asparaginase, N-terminal LDH65_13730 PF17763 Glutaminase/Asparaginase C-terminal domain LDH65_13735 PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding LDH65_13735 PF18381 YcaO cyclodehydratase C-terminal domain LDH65_13740 PF01226 Formate/nitrite transporter LDH65_13745 PF01228 Glycine radical LDH65_13745 PF02901 Pyruvate formate lyase-like LDH65_13755 PF04055 Radical SAM superfamily LDH65_13760 PF07690 Major Facilitator Superfamily LDH65_13765 PF02403 Seryl-tRNA synthetase N-terminal domain LDH65_13765 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) LDH65_13770 PF12002 MgsA AAA+ ATPase C terminal LDH65_13770 PF00004 ATPase family associated with various cellular activities (AAA) LDH65_13770 PF16193 AAA C-terminal domain LDH65_13775 PF03548 Outer membrane lipoprotein carrier protein LolA LDH65_13780 PF13491 4TM region of DNA translocase FtsK/SpoIIIE LDH65_13780 PF17854 FtsK alpha domain LDH65_13780 PF01580 FtsK/SpoIIIE family LDH65_13780 PF09397 Ftsk gamma domain LDH65_13785 PF01037 Lrp/AsnC ligand binding domain LDH65_13790 PF07992 Pyridine nucleotide-disulphide oxidoreductase LDH65_13795 PF00005 ABC transporter LDH65_13795 PF00664 ABC transporter transmembrane region LDH65_13800 PF00005 ABC transporter LDH65_13800 PF00664 ABC transporter transmembrane region LDH65_13805 PF03588 Leucyl/phenylalanyl-tRNA protein transferase LDH65_13810 PF01176 Translation initiation factor 1A / IF-1 LDH65_13820 PF00004 ATPase family associated with various cellular activities (AAA) LDH65_13820 PF07724 AAA domain (Cdc48 subfamily) LDH65_13820 PF17871 AAA lid domain LDH65_13820 PF02861 Clp amino terminal domain, pathogenicity island component LDH65_13820 PF10431 C-terminal, D2-small domain, of ClpB protein LDH65_13825 PF02617 ATP-dependent Clp protease adaptor protein ClpS LDH65_13830 PF00313 'Cold-shock' DNA-binding domain LDH65_13835 PF12704 MacB-like periplasmic core domain LDH65_13835 PF00005 ABC transporter LDH65_13835 PF02687 FtsX-like permease family LDH65_13840 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LDH65_13845 PF04393 Protein of unknown function (DUF535) LDH65_13850 PF11398 Protein of unknown function (DUF2813) LDH65_13855 PF03956 Lysine exporter LysO LDH65_13860 PF03063 Prismane/CO dehydrogenase family LDH65_13865 PF00175 Oxidoreductase NAD-binding domain LDH65_13865 PF00111 2Fe-2S iron-sulfur cluster binding domain LDH65_13865 PF00970 Oxidoreductase FAD-binding domain LDH65_13870 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain LDH65_13870 PF00205 Thiamine pyrophosphate enzyme, central domain LDH65_13870 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain LDH65_13875 PF01212 Beta-eliminating lyase LDH65_13880 PF11066 Protein of unknown function (DUF2867) LDH65_13880 PF13460 NAD(P)H-binding LDH65_13885 PF01370 NAD dependent epimerase/dehydratase family LDH65_13890 PF12883 Protein of unknown function (DUF3828) LDH65_13895 PF01817 Chorismate mutase type II LDH65_13900 PF00005 ABC transporter LDH65_13905 PF00497 Bacterial extracellular solute-binding proteins, family 3 LDH65_13910 PF00528 Binding-protein-dependent transport system inner membrane component LDH65_13915 PF00528 Binding-protein-dependent transport system inner membrane component LDH65_13925 PF00892 EamA-like transporter family LDH65_13930 PF10100 Staphylopine dehydrogenase LDH65_13935 PF03059 Nicotianamine synthase protein LDH65_13940 PF00005 ABC transporter LDH65_13970 PF00497 Bacterial extracellular solute-binding proteins, family 3 LDH65_13975 PF05958 tRNA (Uracil-5-)-methyltransferase LDH65_13980 PF10767 Protein of unknown function (DUF2593) LDH65_13985 PF00528 Binding-protein-dependent transport system inner membrane component LDH65_13990 PF00528 Binding-protein-dependent transport system inner membrane component LDH65_13995 PF08402 TOBE domain LDH65_13995 PF00005 ABC transporter LDH65_14000 PF13416 Bacterial extracellular solute-binding protein LDH65_14005 PF10722 Putative bacterial sensory transduction regulator LDH65_14010 PF07214 Protein of unknown function (DUF1418) LDH65_14015 PF00462 Glutaredoxin LDH65_14020 PF06826 Predicted Permease Membrane Region LDH65_14020 PF02080 TrkA-C domain LDH65_14030 PF01569 PAP2 superfamily LDH65_14035 PF01791 DeoC/LacD family aldolase LDH65_14040 PF00455 DeoR C terminal sensor domain LDH65_14040 PF08220 DeoR-like helix-turn-helix domain LDH65_14050 PF07943 Penicillin-binding protein 5, C-terminal domain LDH65_14050 PF00768 D-alanyl-D-alanine carboxypeptidase LDH65_14055 PF00528 Binding-protein-dependent transport system inner membrane component LDH65_14060 PF09383 NIL domain LDH65_14060 PF00005 ABC transporter LDH65_14065 PF03180 NLPA lipoprotein LDH65_14080 PF13417 Glutathione S-transferase, N-terminal domain LDH65_14080 PF00043 Glutathione S-transferase, C-terminal domain LDH65_14085 PF07715 TonB-dependent Receptor Plug Domain LDH65_14085 PF00593 TonB dependent receptor LDH65_14090 PF00005 ABC transporter LDH65_14095 PF01032 FecCD transport family LDH65_14105 PF00324 Amino acid permease LDH65_14110 PF03466 LysR substrate binding domain LDH65_14110 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LDH65_14115 PF03601 Conserved hypothetical protein 698 LDH65_14120 PF01261 Xylose isomerase-like TIM barrel LDH65_14125 PF13953 PapC C-terminal domain LDH65_14125 PF13954 PapC N-terminal domain LDH65_14125 PF00577 Outer membrane usher protein LDH65_14130 PF02753 Pili assembly chaperone PapD, C-terminal domain LDH65_14130 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain LDH65_14140 PF17550 Family of unknown function LDH65_14145 PF00486 Transcriptional regulatory protein, C terminal LDH65_14150 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit LDH65_14150 PF02378 Phosphotransferase system, EIIC LDH65_14155 PF00294 pfkB family carbohydrate kinase LDH65_14160 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 LDH65_14160 PF00381 PTS HPr component phosphorylation site LDH65_14165 PF00293 NUDIX domain LDH65_14170 PF02653 Branched-chain amino acid transport system / permease component LDH65_14175 PF00005 ABC transporter LDH65_14185 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) LDH65_14190 PF02782 FGGY family of carbohydrate kinases, C-terminal domain LDH65_14190 PF00370 FGGY family of carbohydrate kinases, N-terminal domain LDH65_14195 PF00171 Aldehyde dehydrogenase family LDH65_14205 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain LDH65_14205 PF01842 ACT domain LDH65_14205 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain LDH65_14215 PF03692 Putative zinc- or iron-chelating domain LDH65_14220 PF03222 Tryptophan/tyrosine permease family LDH65_14225 PF01132 Elongation factor P (EF-P) OB domain LDH65_14225 PF08207 Elongation factor P (EF-P) KOW-like domain LDH65_14225 PF09285 Elongation factor P, C-terminal LDH65_14230 PF03786 D-mannonate dehydratase (UxuA) LDH65_14235 PF08125 Mannitol dehydrogenase C-terminal domain LDH65_14235 PF01232 Mannitol dehydrogenase Rossmann domain LDH65_14240 PF07729 FCD domain LDH65_14240 PF00392 Bacterial regulatory proteins, gntR family LDH65_14245 PF02492 CobW/HypB/UreG, nucleotide-binding domain LDH65_14245 PF07683 Cobalamin synthesis protein cobW C-terminal domain LDH65_14250 PF01569 PAP2 superfamily LDH65_14255 PF00877 NlpC/P60 family LDH65_14260 PF12792 CSS motif domain associated with EAL LDH65_14260 PF00563 EAL domain LDH65_14265 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle LDH65_14270 PF00528 Binding-protein-dependent transport system inner membrane component LDH65_14275 PF00528 Binding-protein-dependent transport system inner membrane component LDH65_14275 PF12911 N-terminal TM domain of oligopeptide transport permease C LDH65_14280 PF00005 ABC transporter LDH65_14280 PF08352 Oligopeptide/dipeptide transporter, C-terminal region LDH65_14285 PF13989 YejG-like protein LDH65_14290 PF07690 Major Facilitator Superfamily LDH65_14295 PF00849 RNA pseudouridylate synthase LDH65_14295 PF01479 S4 domain LDH65_14300 PF00271 Helicase conserved C-terminal domain LDH65_14300 PF04851 Type III restriction enzyme, res subunit LDH65_14305 PF01386 Ribosomal L25p family LDH65_14310 PF01797 Transposase IS200 like LDH65_14315 PF04245 37-kD nucleoid-associated bacterial protein LDH65_14320 PF07208 Protein of unknown function (DUF1414) LDH65_14325 PF11893 Domain of unknown function (DUF3413) LDH65_14325 PF00884 Sulfatase LDH65_14340 PF05638 Type VI secretion system effector, Hcp LDH65_14360 PF00232 Glycosyl hydrolase family 1 LDH65_14365 PF01380 SIS domain LDH65_14365 PF01418 Helix-turn-helix domain, rpiR family LDH65_14370 PF07484 Phage Tail Collar Domain LDH65_14380 PF04865 Baseplate J-like protein LDH65_14420 PF04984 Phage tail sheath protein subtilisin-like domain LDH65_14420 PF17482 Phage tail sheath C-terminal domain LDH65_14440 PF01261 Xylose isomerase-like TIM barrel LDH65_14445 PF00455 DeoR C terminal sensor domain LDH65_14445 PF08220 DeoR-like helix-turn-helix domain LDH65_14455 PF17042 Nucleotide-binding C-terminal domain LDH65_14455 PF07005 Sugar-binding N-terminal domain LDH65_14460 PF06530 Phage antitermination protein Q LDH65_14465 PF01381 Helix-turn-helix LDH65_14465 PF00717 Peptidase S24-like LDH65_14470 PF06183 DinI-like family LDH65_14475 PF01278 Omptin family LDH65_14480 PF02743 Cache domain LDH65_14480 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LDH65_14480 PF00672 HAMP domain LDH65_14485 PF12706 Beta-lactamase superfamily domain LDH65_14495 PF00144 Beta-lactamase LDH65_14515 PF00267 Gram-negative porin LDH65_14520 PF07690 Major Facilitator Superfamily LDH65_14525 PF01627 Hpt domain LDH65_14525 PF16359 RcsD-ABL domain LDH65_14525 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LDH65_14530 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LDH65_14530 PF01627 Hpt domain LDH65_14530 PF16359 RcsD-ABL domain LDH65_14535 PF00196 Bacterial regulatory proteins, luxR family LDH65_14535 PF00072 Response regulator receiver domain LDH65_14540 PF00072 Response regulator receiver domain LDH65_14540 PF09456 RcsC Alpha-Beta-Loop (ABL) LDH65_14540 PF00512 His Kinase A (phospho-acceptor) domain LDH65_14540 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LDH65_14545 PF03989 DNA gyrase C-terminal domain, beta-propeller LDH65_14545 PF00521 DNA gyrase/topoisomerase IV, subunit A LDH65_14555 PF03477 ATP cone domain LDH65_14555 PF02867 Ribonucleotide reductase, barrel domain LDH65_14555 PF00317 Ribonucleotide reductase, all-alpha domain LDH65_14560 PF00268 Ribonucleotide reductase, small chain LDH65_14565 PF00111 2Fe-2S iron-sulfur cluster binding domain LDH65_14570 PF03974 Ecotin LDH65_14575 PF00994 Probable molybdopterin binding domain LDH65_14580 PF03222 Tryptophan/tyrosine permease family LDH65_14585 PF07437 YfaZ precursor LDH65_14590 PF00199 Catalase LDH65_14590 PF06628 Catalase-related immune-responsive LDH65_14595 PF06733 DEAD_2 LDH65_14595 PF13307 Helicase C-terminal domain LDH65_14600 PF00267 Gram-negative porin LDH65_14605 PF00892 EamA-like transporter family LDH65_14615 PF01276 Orn/Lys/Arg decarboxylase, major domain LDH65_14615 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain LDH65_14615 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain LDH65_14620 PF13520 Amino acid permease LDH65_14625 PF00528 Binding-protein-dependent transport system inner membrane component LDH65_14630 PF00005 ABC transporter LDH65_14635 PF00528 Binding-protein-dependent transport system inner membrane component LDH65_14645 PF00581 Rhodanese-like domain LDH65_14660 PF00005 ABC transporter LDH65_14665 PF00005 ABC transporter LDH65_14670 PF02653 Branched-chain amino acid transport system / permease component LDH65_14675 PF02653 Branched-chain amino acid transport system / permease component LDH65_14680 PF02954 Bacterial regulatory protein, Fis family LDH65_14680 PF00158 Sigma-54 interaction domain LDH65_14680 PF13188 PAS domain LDH65_14685 PF07308 Protein of unknown function (DUF1456) LDH65_14690 PF00528 Binding-protein-dependent transport system inner membrane component LDH65_14695 PF00528 Binding-protein-dependent transport system inner membrane component LDH65_14705 PF00005 ABC transporter LDH65_14710 PF04226 Transglycosylase associated protein LDH65_14720 PF01844 HNH endonuclease LDH65_14725 PF01928 CYTH domain LDH65_14730 PF01565 FAD binding domain LDH65_14730 PF09330 D-lactate dehydrogenase, membrane binding LDH65_14735 PF00768 D-alanyl-D-alanine carboxypeptidase LDH65_14745 PF01207 Dihydrouridine synthase (Dus) LDH65_14765 PF01048 Phosphorylase superfamily LDH65_14775 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LDH65_14775 PF03466 LysR substrate binding domain LDH65_14780 PF02028 BCCT, betaine/carnitine/choline family transporter LDH65_14785 PF13977 BetI-type transcriptional repressor, C-terminal LDH65_14785 PF00440 Bacterial regulatory proteins, tetR family LDH65_14790 PF00171 Aldehyde dehydrogenase family LDH65_14795 PF05199 GMC oxidoreductase LDH65_14795 PF00732 GMC oxidoreductase LDH65_14800 PF01797 Transposase IS200 like LDH65_14805 PF01027 Inhibitor of apoptosis-promoting Bax1 LDH65_14810 PF02391 MoaE protein LDH65_14815 PF02597 ThiS family LDH65_14820 PF01967 MoaC family LDH65_14825 PF06463 Molybdenum Cofactor Synthesis C LDH65_14825 PF04055 Radical SAM superfamily LDH65_14830 PF01933 Uncharacterised protein family UPF0052 LDH65_14835 PF09905 DNA-binding protein VF530 LDH65_14840 PF02151 UvrB/uvrC motif LDH65_14840 PF04851 Type III restriction enzyme, res subunit LDH65_14840 PF00271 Helicase conserved C-terminal domain LDH65_14840 PF12344 Ultra-violet resistance protein B LDH65_14840 PF17757 UvrB interaction domain LDH65_14845 PF00005 ABC transporter LDH65_14845 PF09383 NIL domain LDH65_14855 PF08241 Methyltransferase domain LDH65_14860 PF00155 Aminotransferase class I and II LDH65_14865 PF04055 Radical SAM superfamily LDH65_14865 PF06968 Biotin and Thiamin Synthesis associated domain LDH65_14870 PF00202 Aminotransferase class-III LDH65_14875 PF10282 Lactonase, 7-bladed beta-propeller LDH65_14885 PF00005 ABC transporter LDH65_14885 PF03459 TOBE domain LDH65_14890 PF00528 Binding-protein-dependent transport system inner membrane component LDH65_14900 PF10766 Multidrug efflux pump-associated protein AcrZ LDH65_14905 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LDH65_14905 PF03459 TOBE domain LDH65_14910 PF00005 ABC transporter LDH65_14920 PF16363 GDP-mannose 4,6 dehydratase LDH65_14925 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain LDH65_14925 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain LDH65_14930 PF08544 GHMP kinases C terminal LDH65_14930 PF00288 GHMP kinases N terminal domain LDH65_14930 PF10509 Galactokinase galactose-binding signature LDH65_14940 PF01263 Aldose 1-epimerase LDH65_14950 PF00300 Histidine phosphatase superfamily (branch 1) LDH65_14955 PF00793 DAHP synthetase I family LDH65_14960 PF00665 Integrase core domain LDH65_14960 PF02796 Helix-turn-helix domain of resolvase LDH65_14965 PF01695 IstB-like ATP binding protein LDH65_14970 PF00793 DAHP synthetase I family LDH65_14975 PF01545 Cation efflux family LDH65_14980 PF04973 Nicotinamide mononucleotide transporter LDH65_14985 PF02445 Quinolinate synthetase A protein LDH65_15005 PF13174 Tetratricopeptide repeat LDH65_15005 PF16331 TolA binding protein trimerisation LDH65_15010 PF00691 OmpA family LDH65_15015 PF04052 TolB amino-terminal domain LDH65_15015 PF07676 WD40-like Beta Propeller Repeat LDH65_15020 PF06519 TolA C-terminal LDH65_15020 PF06519 TolA C-terminal LDH65_15025 PF02472 Biopolymer transport protein ExbD/TolR LDH65_15030 PF01618 MotA/TolQ/ExbB proton channel family LDH65_15035 PF03061 Thioesterase superfamily LDH65_15040 PF09600 Cyd operon protein YbgE (Cyd_oper_YbgE) LDH65_15045 PF08173 Membrane bound YbgT-like protein LDH65_15050 PF02322 Cytochrome bd terminal oxidase subunit II LDH65_15055 PF01654 Cytochrome bd terminal oxidase subunit I LDH65_15060 PF02629 CoA binding domain LDH65_15060 PF00549 CoA-ligase LDH65_15065 PF08442 ATP-grasp domain LDH65_15065 PF00549 CoA-ligase LDH65_15070 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) LDH65_15070 PF00364 Biotin-requiring enzyme LDH65_15070 PF02817 e3 binding domain LDH65_15075 PF16078 2-oxoglutarate dehydrogenase N-terminus LDH65_15075 PF00676 Dehydrogenase E1 component LDH65_15075 PF16870 2-oxoglutarate dehydrogenase C-terminal LDH65_15075 PF02779 Transketolase, pyrimidine binding domain LDH65_15080 PF13085 2Fe-2S iron-sulfur cluster binding domain LDH65_15085 PF00890 FAD binding domain LDH65_15085 PF02910 Fumarate reductase flavoprotein C-term LDH65_15090 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit LDH65_15095 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit LDH65_15100 PF00285 Citrate synthase, C-terminal domain LDH65_15105 PF01025 GrpE LDH65_15110 PF01513 ATP-NAD kinase LDH65_15115 PF02463 RecF/RecN/SMC N terminal domain LDH65_15120 PF04355 SmpA / OmlA family LDH65_15125 PF03658 RnfH family Ubiquitin LDH65_15130 PF03364 Polyketide cyclase / dehydrase and lipid transport LDH65_15135 PF01668 SmpB protein LDH65_15150 PF13356 Arm DNA-binding domain LDH65_15150 PF00589 Phage integrase family LDH65_15210 PF05973 Phage derived protein Gp49-like (DUF891) LDH65_15220 PF00665 Integrase core domain LDH65_15220 PF02796 Helix-turn-helix domain of resolvase LDH65_15225 PF01695 IstB-like ATP binding protein LDH65_15240 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin LDH65_15250 PF00929 Exonuclease LDH65_15255 PF00075 RNase H LDH65_15260 PF08241 Methyltransferase domain LDH65_15265 PF00753 Metallo-beta-lactamase superfamily LDH65_15265 PF16123 Hydroxyacylglutathione hydrolase C-terminus LDH65_15270 PF01476 LysM domain LDH65_15270 PF01464 Transglycosylase SLT domain LDH65_15275 PF03372 Endonuclease/Exonuclease/phosphatase family LDH65_15285 PF00248 Aldo/keto reductase family LDH65_15320 PF00005 ABC transporter LDH65_15320 PF09383 NIL domain LDH65_15325 PF00528 Binding-protein-dependent transport system inner membrane component LDH65_15330 PF03180 NLPA lipoprotein LDH65_15335 PF16358 RcsF lipoprotein LDH65_15340 PF01980 tRNA-methyltransferase O LDH65_15340 PF18389 TrmO C-terminal domain LDH65_15345 PF03129 Anticodon binding domain LDH65_15345 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) LDH65_15345 PF04073 Aminoacyl-tRNA editing domain LDH65_15350 PF17185 NlpE C-terminal OB domain LDH65_15350 PF04170 NlpE N-terminal domain LDH65_15355 PF00472 RF-1 domain LDH65_15360 PF07152 YaeQ protein LDH65_15365 PF06786 Uncharacterised protein family (UPF0253) LDH65_15370 PF07073 Modulator of Rho-dependent transcription termination (ROF) LDH65_15375 PF00034 Cytochrome c LDH65_15380 PF01171 PP-loop family LDH65_15380 PF09179 TilS substrate binding domain LDH65_15380 PF11734 TilS substrate C-terminal domain LDH65_15385 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily LDH65_15390 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit LDH65_15395 PF01336 OB-fold nucleic acid binding domain LDH65_15395 PF02811 PHP domain LDH65_15395 PF07733 Bacterial DNA polymerase III alpha NTPase domain LDH65_15395 PF17657 Bacterial DNA polymerase III alpha subunit finger domain LDH65_15395 PF14579 Helix-hairpin-helix motif LDH65_15400 PF01351 Ribonuclease HII LDH65_15405 PF02684 Lipid-A-disaccharide synthetase LDH65_15410 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 LDH65_15410 PF00132 Bacterial transferase hexapeptide (six repeats) LDH65_15415 PF07977 FabA-like domain LDH65_15420 PF00132 Bacterial transferase hexapeptide (six repeats) LDH65_15420 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD LDH65_15425 PF03938 Outer membrane protein (OmpH-like) LDH65_15430 PF01103 Surface antigen LDH65_15430 PF07244 Surface antigen variable number repeat LDH65_15435 PF17820 PDZ domain LDH65_15435 PF02163 Peptidase family M50 LDH65_15445 PF01255 Putative undecaprenyl diphosphate synthase LDH65_15450 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain LDH65_15450 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase LDH65_15450 PF13288 DXP reductoisomerase C-terminal domain LDH65_15455 PF01765 Ribosome recycling factor LDH65_15460 PF00696 Amino acid kinase family LDH65_15465 PF00889 Elongation factor TS LDH65_15470 PF00318 Ribosomal protein S2 LDH65_15475 PF00557 Metallopeptidase family M24 LDH65_15480 PF01909 Nucleotidyltransferase domain LDH65_15480 PF01966 HD domain LDH65_15480 PF01842 ACT domain LDH65_15480 PF08335 GlnD PII-uridylyltransferase LDH65_15485 PF14602 Hexapeptide repeat of succinyl-transferase LDH65_15485 PF00132 Bacterial transferase hexapeptide (six repeats) LDH65_15485 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal LDH65_15490 PF11944 Protein of unknown function (DUF3461) LDH65_15495 PF00258 Flavodoxin LDH65_15500 PF00849 RNA pseudouridylate synthase LDH65_15505 PF04287 tRNA pseudouridine synthase C LDH65_15510 PF01797 Transposase IS200 like LDH65_15515 PF07348 Syd protein (SUKH-2) LDH65_15520 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term LDH65_15520 PF14489 QueF-like protein LDH65_15525 PF11892 Domain of unknown function (DUF3412) LDH65_15525 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases LDH65_15525 PF03641 Possible lysine decarboxylase LDH65_15530 PF01367 5'-3' exonuclease, C-terminal SAM fold LDH65_15530 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain LDH65_15535 PF01728 FtsJ-like methyltransferase LDH65_15535 PF18125 RlmM ferredoxin-like domain LDH65_15540 PF04241 Protein of unknown function (DUF423) LDH65_15545 PF03466 LysR substrate binding domain LDH65_15545 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LDH65_15555 PF00266 Aminotransferase class-V LDH65_15560 PF02657 Fe-S metabolism associated domain LDH65_15565 PF00899 ThiF family LDH65_15570 PF06725 3D domain LDH65_15570 PF03562 MltA specific insert domain LDH65_15585 PF01520 N-acetylmuramoyl-L-alanine amidase LDH65_15585 PF11741 AMIN domain LDH65_15590 PF00696 Amino acid kinase family LDH65_15590 PF00583 Acetyltransferase (GNAT) family LDH65_15595 PF13538 UvrD-like helicase C-terminal domain LDH65_15600 PF00580 UvrD/REP helicase N-terminal domain LDH65_15600 PF12705 PD-(D/E)XK nuclease superfamily LDH65_15600 PF13361 UvrD-like helicase C-terminal domain LDH65_15605 PF00675 Insulinase (Peptidase family M16) LDH65_15605 PF05193 Peptidase M16 inactive domain LDH65_15605 PF16187 Middle or third domain of peptidase_M16 LDH65_15610 PF17946 RecC C-terminal domain LDH65_15630 PF01695 IstB-like ATP binding protein LDH65_15635 PF00665 Integrase core domain LDH65_15635 PF02796 Helix-turn-helix domain of resolvase LDH65_15645 PF00303 Thymidylate synthase LDH65_15650 PF01790 Prolipoprotein diacylglyceryl transferase LDH65_15655 PF02896 PEP-utilising enzyme, TIM barrel domain LDH65_15655 PF00391 PEP-utilising enzyme, mobile domain LDH65_15655 PF05524 PEP-utilising enzyme, N-terminal LDH65_15655 PF01590 GAF domain LDH65_15660 PF00293 NUDIX domain LDH65_15665 PF02976 DNA mismatch repair enzyme MutH LDH65_15670 PF00248 Aldo/keto reductase family LDH65_15685 PF07690 Major Facilitator Superfamily LDH65_15690 PF01553 Acyltransferase LDH65_15690 PF00501 AMP-binding enzyme LDH65_15690 PF13193 AMP-binding enzyme C-terminal domain LDH65_15695 PF00384 Molybdopterin oxidoreductase LDH65_15695 PF01568 Molydopterin dinucleotide binding domain LDH65_15700 PF00356 Bacterial regulatory proteins, lacI family LDH65_15705 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain LDH65_15705 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain LDH65_15710 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LDH65_15710 PF03466 LysR substrate binding domain LDH65_15715 PF07690 Major Facilitator Superfamily LDH65_15720 PF03466 LysR substrate binding domain LDH65_15720 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LDH65_15735 PF00672 HAMP domain LDH65_15735 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LDH65_15735 PF02203 Tar ligand binding domain homologue LDH65_15755 PF06750 Bacterial Peptidase A24 N-terminal domain LDH65_15755 PF01478 Type IV leader peptidase family LDH65_15775 PF07963 Prokaryotic N-terminal methylation motif LDH65_15775 PF11612 Type II secretion system (T2SS), protein J LDH65_15780 PF07963 Prokaryotic N-terminal methylation motif LDH65_15780 PF02501 Type II secretion system (T2SS), protein I LDH65_15795 PF07963 Prokaryotic N-terminal methylation motif LDH65_15795 PF08334 Type II secretion system (T2SS), protein G LDH65_15800 PF00482 Type II secretion system (T2SS), protein F LDH65_15805 PF00437 Type II/IV secretion system protein LDH65_15810 PF00263 Bacterial type II and III secretion system protein LDH65_15810 PF03958 Bacterial type II/III secretion system short domain LDH65_15825 PF00484 Carbonic anhydrase LDH65_15845 PF09092 Lyase, N terminal LDH65_15845 PF02278 Polysaccharide lyase family 8, super-sandwich domain LDH65_15845 PF02884 Polysaccharide lyase family 8, C-terminal beta-sandwich domain LDH65_15845 PF09093 Lyase, catalytic LDH65_15855 PF02796 Helix-turn-helix domain of resolvase LDH65_15855 PF00665 Integrase core domain LDH65_15860 PF01797 Transposase IS200 like LDH65_15870 PF00884 Sulfatase LDH65_15875 PF00455 DeoR C terminal sensor domain LDH65_15875 PF08220 DeoR-like helix-turn-helix domain LDH65_15880 PF08013 Tagatose 6 phosphate kinase LDH65_15885 PF01380 SIS domain LDH65_15890 PF03830 PTS system sorbose subfamily IIB component LDH65_15895 PF03609 PTS system sorbose-specific iic component LDH65_15900 PF03613 PTS system mannose/fructose/sorbose family IID component LDH65_15905 PF03610 PTS system fructose IIA component LDH65_15910 PF01979 Amidohydrolase family LDH65_15920 PF07470 Glycosyl Hydrolase Family 88 LDH65_15925 PF04055 Radical SAM superfamily LDH65_15925 PF13186 Iron-sulfur cluster-binding domain LDH65_15930 PF00884 Sulfatase LDH65_15940 PF01116 Fructose-bisphosphate aldolase class-II LDH65_15950 PF00356 Bacterial regulatory proteins, lacI family LDH65_15955 PF07690 Major Facilitator Superfamily LDH65_15960 PF13802 Galactose mutarotase-like LDH65_15960 PF01055 Glycosyl hydrolases family 31 LDH65_15960 PF16338 Domain of unknown function (DUF4968) LDH65_15960 PF17137 Domain of unknown function (DUF5110) LDH65_15965 PF00356 Bacterial regulatory proteins, lacI family LDH65_15970 PF02264 LamB porin LDH65_15975 PF00367 phosphotransferase system, EIIB LDH65_15975 PF02378 Phosphotransferase system, EIIC LDH65_15980 PF02449 Beta-galactosidase LDH65_15980 PF08533 Beta-galactosidase C-terminal domain LDH65_15980 PF08532 Beta-galactosidase trimerisation domain LDH65_15985 PF07745 Glycosyl hydrolase family 53 LDH65_15990 PF00528 Binding-protein-dependent transport system inner membrane component LDH65_15995 PF00528 Binding-protein-dependent transport system inner membrane component LDH65_16000 PF13416 Bacterial extracellular solute-binding protein LDH65_16005 PF17912 MalK OB fold domain LDH65_16005 PF00005 ABC transporter LDH65_16010 PF00005 ABC transporter LDH65_16015 PF02653 Branched-chain amino acid transport system / permease component LDH65_16020 PF13407 Periplasmic binding protein domain LDH65_16030 PF05708 Permuted papain-like amidase enzyme, YaeF/YiiX, C92 family LDH65_16040 PF03551 Transcriptional regulator PadR-like family LDH65_16130 PF15731 Antitoxin component of bacterial toxin-antitoxin system, MqsA LDH65_16135 PF15723 Motility quorum-sensing regulator, toxin of MqsA LDH65_16155 PF00589 Phage integrase family LDH65_16155 PF14659 Phage integrase, N-terminal SAM-like domain LDH65_16155 PF13356 Arm DNA-binding domain LDH65_16165 PF01336 OB-fold nucleic acid binding domain LDH65_16165 PF00152 tRNA synthetases class II (D, K and N) LDH65_16175 PF01368 DHH family LDH65_16175 PF02272 DHHA1 domain LDH65_16175 PF17768 RecJ OB domain LDH65_16180 PF10411 Disulfide bond isomerase protein N-terminus LDH65_16180 PF13098 Thioredoxin-like domain LDH65_16185 PF02899 Phage integrase, N-terminal SAM-like domain LDH65_16185 PF00589 Phage integrase family LDH65_16190 PF00258 Flavodoxin LDH65_16195 PF06123 Inner membrane protein CreD LDH65_16205 PF01695 IstB-like ATP binding protein LDH65_16210 PF02796 Helix-turn-helix domain of resolvase LDH65_16210 PF00665 Integrase core domain LDH65_16220 PF00072 Response regulator receiver domain LDH65_16220 PF00486 Transcriptional regulatory protein, C terminal LDH65_16225 PF07254 Membrane-bound toxin component of toxin-antitoxin system LDH65_16230 PF03937 Flavinator of succinate dehydrogenase LDH65_16235 PF01571 Aminomethyltransferase folate-binding domain LDH65_16245 PF03006 Haemolysin-III related LDH65_16275 PF02347 Glycine cleavage system P-protein LDH65_16280 PF01597 Glycine cleavage H-protein LDH65_16285 PF01571 Aminomethyltransferase folate-binding domain LDH65_16285 PF08669 Glycine cleavage T-protein C-terminal barrel domain LDH65_16290 PF01494 FAD binding domain LDH65_16295 PF01494 FAD binding domain LDH65_16300 PF05195 Aminopeptidase P, N-terminal domain LDH65_16300 PF00557 Metallopeptidase family M24 LDH65_16305 PF03695 Uncharacterised protein family (UPF0149) LDH65_16310 PF05164 Cell division protein ZapA LDH65_16320 PF01812 5-formyltetrahydrofolate cyclo-ligase family LDH65_16330 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain LDH65_16330 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain LDH65_16330 PF01842 ACT domain LDH65_16335 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) LDH65_16340 PF03466 LysR substrate binding domain LDH65_16340 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LDH65_16345 PF04402 Protein of unknown function (DUF541) LDH65_16350 PF01810 LysE type translocator LDH65_16355 PF00924 Mechanosensitive ion channel LDH65_16355 PF05552 Conserved TM helix LDH65_16365 PF01116 Fructose-bisphosphate aldolase class-II LDH65_16370 PF00162 Phosphoglycerate kinase LDH65_16375 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain LDH65_16375 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain LDH65_16385 PF02779 Transketolase, pyrimidine binding domain LDH65_16385 PF02780 Transketolase, C-terminal domain LDH65_16385 PF00456 Transketolase, thiamine diphosphate binding domain LDH65_16390 PF01435 Peptidase family M48 LDH65_16395 PF00355 Rieske [2Fe-2S] domain LDH65_16400 PF17810 Arginine decarboxylase helical bundle domain LDH65_16400 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain LDH65_16400 PF17944 Arginine decarboxylase C-terminal helical extension LDH65_16405 PF02773 S-adenosylmethionine synthetase, C-terminal domain LDH65_16405 PF02772 S-adenosylmethionine synthetase, central domain LDH65_16405 PF00438 S-adenosylmethionine synthetase, N-terminal domain LDH65_16410 PF10263 SprT-like family LDH65_16410 PF17283 SprT-like zinc ribbon domain LDH65_16415 PF04231 Endonuclease I LDH65_16420 PF04452 RNA methyltransferase LDH65_16425 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain LDH65_16425 PF02951 Prokaryotic glutathione synthetase, N-terminal domain LDH65_16430 PF02622 Uncharacterized ACR, COG1678 LDH65_16435 PF03652 Holliday junction resolvase LDH65_16440 PF00795 Carbon-nitrogen hydrolase LDH65_16445 PF04371 Porphyromonas-type peptidyl-arginine deiminase LDH65_16450 PF00437 Type II/IV secretion system protein LDH65_16455 PF01168 Alanine racemase, N-terminal domain LDH65_16460 PF03807 NADP oxidoreductase coenzyme F420-dependent LDH65_16460 PF14748 Pyrroline-5-carboxylate reductase dimerisation LDH65_16465 PF02325 YGGT family LDH65_16470 PF02594 Uncharacterised ACR, YggU family COG1872 LDH65_16475 PF01725 Ham1 family LDH65_16480 PF06969 HemN C-terminal domain LDH65_16480 PF04055 Radical SAM superfamily LDH65_16485 PF16671 Actin cross-linking domain LDH65_16485 PF12146 Serine aminopeptidase, S33 LDH65_16485 PF11647 Membrane Localization Domain LDH65_16485 PF11713 Peptidase C80 family LDH65_16485 PF07634 RtxA repeat LDH65_16495 PF04960 Glutaminase LDH65_16500 PF04320 Protein with unknown function (DUF469) LDH65_16505 PF02390 Putative methyltransferase LDH65_16510 PF10576 Iron-sulfur binding domain of endonuclease III LDH65_16510 PF00633 Helix-hairpin-helix motif LDH65_16510 PF00730 HhH-GPD superfamily base excision DNA repair protein LDH65_16510 PF14815 NUDIX domain LDH65_16515 PF04362 Bacterial Fe(2+) trafficking LDH65_16520 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain LDH65_16520 PF01464 Transglycosylase SLT domain LDH65_16530 PF07715 TonB-dependent Receptor Plug Domain LDH65_16535 PF02653 Branched-chain amino acid transport system / permease component LDH65_16540 PF00005 ABC transporter LDH65_16545 PF13407 Periplasmic binding protein domain LDH65_16550 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain LDH65_16550 PF01276 Orn/Lys/Arg decarboxylase, major domain LDH65_16550 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain LDH65_16610 PF04717 Type VI secretion system, phage-baseplate injector LDH65_16610 PF10106 Uncharacterized protein conserved in bacteria (DUF2345) LDH65_16610 PF13296 Putative type VI secretion system Rhs element Vgr LDH65_16615 PF00004 ATPase family associated with various cellular activities (AAA) LDH65_16615 PF07724 AAA domain (Cdc48 subfamily) LDH65_16615 PF17871 AAA lid domain LDH65_16615 PF10431 C-terminal, D2-small domain, of ClpB protein LDH65_16625 PF05736 OprF membrane domain LDH65_16625 PF00691 OmpA family LDH65_16640 PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath LDH65_16665 PF02517 CPBP intramembrane metalloprotease LDH65_16670 PF00765 Autoinducer synthase LDH65_16675 PF03472 Autoinducer binding domain LDH65_16675 PF00196 Bacterial regulatory proteins, luxR family LDH65_16710 PF06276 Ferric iron reductase FhuF-like transporter LDH65_16710 PF04183 IucA / IucC family LDH65_16715 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) LDH65_16720 PF07715 TonB-dependent Receptor Plug Domain LDH65_16720 PF00593 TonB dependent receptor LDH65_16740 PF00356 Bacterial regulatory proteins, lacI family LDH65_16745 PF00939 Sodium:sulfate symporter transmembrane region LDH65_16760 PF05593 RHS Repeat LDH65_16760 PF03527 RHS protein LDH65_16770 PF04717 Type VI secretion system, phage-baseplate injector LDH65_16775 PF12951 Passenger-associated-transport-repeat LDH65_16785 PF02447 GntP family permease LDH65_16800 PF00005 ABC transporter LDH65_16800 PF00664 ABC transporter transmembrane region LDH65_16805 PF04954 Siderophore-interacting protein LDH65_16805 PF08021 Siderophore-interacting FAD-binding domain LDH65_16805 PF00664 ABC transporter transmembrane region LDH65_16805 PF00005 ABC transporter LDH65_16815 PF00975 Thioesterase domain LDH65_16830 PF00501 AMP-binding enzyme LDH65_16830 PF00668 Condensation domain LDH65_16830 PF08242 Methyltransferase domain LDH65_16830 PF00550 Phosphopantetheine attachment site LDH65_16835 PF00668 Condensation domain LDH65_16835 PF13193 AMP-binding enzyme C-terminal domain LDH65_16835 PF00501 AMP-binding enzyme LDH65_16840 PF00501 AMP-binding enzyme LDH65_16840 PF00668 Condensation domain LDH65_16840 PF08242 Methyltransferase domain LDH65_16840 PF00550 Phosphopantetheine attachment site LDH65_16845 PF01695 IstB-like ATP binding protein LDH65_16850 PF00665 Integrase core domain LDH65_16850 PF02796 Helix-turn-helix domain of resolvase LDH65_16855 PF00550 Phosphopantetheine attachment site LDH65_16855 PF02801 Beta-ketoacyl synthase, C-terminal domain LDH65_16855 PF00109 Beta-ketoacyl synthase, N-terminal domain LDH65_16855 PF16197 Ketoacyl-synthetase C-terminal extension LDH65_16855 PF00668 Condensation domain LDH65_16855 PF13193 AMP-binding enzyme C-terminal domain LDH65_16855 PF00202 Aminotransferase class-III LDH65_16855 PF00501 AMP-binding enzyme LDH65_16860 PF00593 TonB dependent receptor LDH65_16860 PF07715 TonB-dependent Receptor Plug Domain LDH65_16865 PF01546 Peptidase family M20/M25/M40 LDH65_16865 PF07687 Peptidase dimerisation domain LDH65_16870 PF03806 AbgT putative transporter family LDH65_16875 PF12468 Type III secretion system leucine rich repeat protein LDH65_16875 PF14496 C-terminal novel E3 ligase, LRR-interacting LDH65_16880 PF14496 C-terminal novel E3 ligase, LRR-interacting LDH65_16880 PF12468 Type III secretion system leucine rich repeat protein LDH65_16880 PF14496 C-terminal novel E3 ligase, LRR-interacting LDH65_16880 PF12468 Type III secretion system leucine rich repeat protein LDH65_16890 PF14496 C-terminal novel E3 ligase, LRR-interacting LDH65_16890 PF12468 Type III secretion system leucine rich repeat protein LDH65_16895 PF03797 Autotransporter beta-domain LDH65_16905 PF07906 ShET2 enterotoxin, N-terminal region LDH65_16910 PF00873 AcrB/AcrD/AcrF family LDH65_16915 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LDH65_16915 PF00529 HlyD membrane-fusion protein of T1SS LDH65_16925 PF00563 EAL domain LDH65_16925 PF00990 Diguanylate cyclase, GGDEF domain LDH65_16925 PF08447 PAS fold LDH65_16925 PF08448 PAS fold LDH65_16960 PF00691 OmpA family LDH65_16960 PF13677 Membrane MotB of proton-channel complex MotA/MotB LDH65_16965 PF01618 MotA/TolQ/ExbB proton channel family LDH65_16970 PF04545 Sigma-70, region 4 LDH65_16970 PF04542 Sigma-70 region 2 LDH65_16995 PF07196 Flagellin hook IN motif LDH65_16995 PF07195 Flagellar hook-associated protein 2 C-terminus LDH65_16995 PF02465 Flagellar hook-associated protein 2 N-terminus LDH65_17000 PF00669 Bacterial flagellin N-terminal helical region LDH65_17000 PF00700 Bacterial flagellin C-terminal helical region LDH65_17005 PF00669 Bacterial flagellin N-terminal helical region LDH65_17005 PF00700 Bacterial flagellin C-terminal helical region LDH65_17010 PF00669 Bacterial flagellin N-terminal helical region LDH65_17010 PF00700 Bacterial flagellin C-terminal helical region LDH65_17015 PF00486 Transcriptional regulatory protein, C terminal LDH65_17015 PF18500 CadC C-terminal domain 1 LDH65_17035 PF06429 Flagellar basal body rod FlgEFG protein C-terminal LDH65_17035 PF00460 Flagella basal body rod protein LDH65_17045 PF02119 Flagellar P-ring protein LDH65_17050 PF02107 Flagellar L-ring protein LDH65_17055 PF00460 Flagella basal body rod protein LDH65_17055 PF06429 Flagellar basal body rod FlgEFG protein C-terminal LDH65_17075 PF06429 Flagellar basal body rod FlgEFG protein C-terminal LDH65_17075 PF00460 Flagella basal body rod protein LDH65_17075 PF07559 Flagellar basal body protein FlaE LDH65_17080 PF03963 Flagellar hook capping protein - N-terminal region LDH65_17080 PF13860 FlgD Ig-like domain LDH65_17080 PF13861 FlgD Tudor-like domain LDH65_17085 PF00460 Flagella basal body rod protein LDH65_17085 PF06429 Flagellar basal body rod FlgEFG protein C-terminal LDH65_17090 PF00460 Flagella basal body rod protein LDH65_17095 PF13144 Chaperone for flagella basal body P-ring formation LDH65_17115 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain LDH65_17115 PF18269 T3SS EscN ATPase C-terminal domain LDH65_17130 PF01514 Secretory protein of YscJ/FliF family LDH65_17130 PF08345 Flagellar M-ring protein C-terminal LDH65_17135 PF02049 Flagellar hook-basal body complex protein FliE LDH65_17140 PF00072 Response regulator receiver domain LDH65_17140 PF00158 Sigma-54 interaction domain LDH65_17140 PF02954 Bacterial regulatory protein, Fis family LDH65_17150 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term LDH65_17155 PF00813 FliP family LDH65_17160 PF01313 Bacterial export proteins, family 3 LDH65_17165 PF01311 Bacterial export proteins, family 1 LDH65_17170 PF01312 FlhB HrpN YscU SpaS Family LDH65_17190 PF01497 Periplasmic binding protein LDH65_17195 PF09222 Fimbrial adhesin F17-AG, lectin domain LDH65_17195 PF00419 Fimbrial protein LDH65_17200 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain LDH65_17200 PF02753 Pili assembly chaperone PapD, C-terminal domain LDH65_17205 PF00577 Outer membrane usher protein LDH65_17205 PF13954 PapC N-terminal domain LDH65_17205 PF13953 PapC C-terminal domain LDH65_17215 PF01797 Transposase IS200 like LDH65_17230 PF13629 Pilus formation protein N terminal region LDH65_17230 PF00263 Bacterial type II and III secretion system protein LDH65_17230 PF04972 BON domain LDH65_17235 PF13629 Pilus formation protein N terminal region LDH65_17235 PF00263 Bacterial type II and III secretion system protein LDH65_17235 PF04972 BON domain LDH65_17250 PF00437 Type II/IV secretion system protein LDH65_17285 PF02472 Biopolymer transport protein ExbD/TolR LDH65_17290 PF01618 MotA/TolQ/ExbB proton channel family LDH65_17295 PF01053 Cys/Met metabolism PLP-dependent enzyme LDH65_17300 PF09335 SNARE associated Golgi protein LDH65_17305 PF12833 Helix-turn-helix domain LDH65_17305 PF06719 AraC-type transcriptional regulator N-terminus LDH65_17310 PF00465 Iron-containing alcohol dehydrogenase LDH65_17320 PF00248 Aldo/keto reductase family LDH65_17330 PF07731 Multicopper oxidase LDH65_17330 PF07732 Multicopper oxidase LDH65_17335 PF01553 Acyltransferase LDH65_17340 PF00521 DNA gyrase/topoisomerase IV, subunit A LDH65_17340 PF03989 DNA gyrase C-terminal domain, beta-propeller LDH65_17350 PF02525 Flavodoxin-like fold LDH65_17355 PF03466 LysR substrate binding domain LDH65_17355 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LDH65_17360 PF00204 DNA gyrase B LDH65_17360 PF00986 DNA gyrase B subunit, carboxyl terminus LDH65_17360 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LDH65_17360 PF01751 Toprim domain LDH65_17365 PF05728 Uncharacterised protein family (UPF0227) LDH65_17370 PF00149 Calcineurin-like phosphoesterase LDH65_17375 PF06853 Protein of unknown function (DUF1249) LDH65_17380 PF00293 NUDIX domain LDH65_17385 PF02321 Outer membrane efflux protein LDH65_17390 PF06693 Protein of unknown function (DUF1190) LDH65_17395 PF03738 Glutathionylspermidine synthase preATP-grasp LDH65_17400 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase LDH65_17405 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase LDH65_17410 PF04380 Membrane fusogenic activity LDH65_17420 PF13520 Amino acid permease LDH65_17425 PF00294 pfkB family carbohydrate kinase LDH65_17425 PF01467 Cytidylyltransferase-like LDH65_17430 PF08335 GlnD PII-uridylyltransferase LDH65_17430 PF03710 Glutamate-ammonia ligase adenylyltransferase LDH65_17435 PF01928 CYTH domain LDH65_17440 PF08239 Bacterial SH3 domain LDH65_17445 PF12627 Probable RNA and SrmB- binding site of polymerase A LDH65_17445 PF01743 Poly A polymerase head domain LDH65_17445 PF01966 HD domain LDH65_17450 PF02673 Bacitracin resistance protein BacA LDH65_17455 PF02152 Dihydroneopterin aldolase LDH65_17460 PF02660 Glycerol-3-phosphate acyltransferase LDH65_17465 PF00814 Glycoprotease family LDH65_17470 PF01165 Ribosomal protein S21 LDH65_17475 PF08275 DNA primase catalytic core, N-terminal domain LDH65_17475 PF08278 DNA primase DnaG DnaB-binding LDH65_17475 PF10410 DnaB-helicase binding domain of primase LDH65_17475 PF01807 CHC2 zinc finger LDH65_17480 PF03979 Sigma-70 factor, region 1.1 LDH65_17480 PF00140 Sigma-70 factor, region 1.2 LDH65_17480 PF04542 Sigma-70 region 2 LDH65_17480 PF04539 Sigma-70 region 3 LDH65_17480 PF04545 Sigma-70, region 4 LDH65_17480 PF04546 Sigma-70, non-essential region LDH65_17540 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LDH65_17540 PF03466 LysR substrate binding domain LDH65_17560 PF01042 Endoribonuclease L-PSP LDH65_17585 PF00155 Aminotransferase class I and II LDH65_17600 PF00529 HlyD membrane-fusion protein of T1SS LDH65_17600 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LDH65_17605 PF04632 Fusaric acid resistance protein family LDH65_17615 PF14310 Fibronectin type III-like domain LDH65_17615 PF01915 Glycosyl hydrolase family 3 C-terminal domain LDH65_17615 PF00933 Glycosyl hydrolase family 3 N terminal domain LDH65_17625 PF00528 Binding-protein-dependent transport system inner membrane component LDH65_17630 PF00528 Binding-protein-dependent transport system inner membrane component LDH65_17635 PF01547 Bacterial extracellular solute-binding protein LDH65_17640 PF00356 Bacterial regulatory proteins, lacI family LDH65_17645 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain LDH65_17650 PF00005 ABC transporter LDH65_17650 PF03459 TOBE domain LDH65_17650 PF17912 MalK OB fold domain LDH65_17670 PF05860 haemagglutination activity domain LDH65_17670 PF04829 Pre-toxin domain with VENN motif LDH65_17670 PF13332 Hemagglutinin repeat LDH65_17670 PF13018 Extended Signal Peptide of Type V secretion system LDH65_17675 PF04829 Pre-toxin domain with VENN motif LDH65_17675 PF05860 haemagglutination activity domain LDH65_17675 PF13332 Hemagglutinin repeat LDH65_17675 PF13018 Extended Signal Peptide of Type V secretion system LDH65_17690 PF04829 Pre-toxin domain with VENN motif LDH65_17690 PF13332 Hemagglutinin repeat LDH65_17695 PF04829 Pre-toxin domain with VENN motif LDH65_17695 PF13332 Hemagglutinin repeat LDH65_17705 PF05860 haemagglutination activity domain LDH65_17705 PF13018 Extended Signal Peptide of Type V secretion system LDH65_17705 PF04829 Pre-toxin domain with VENN motif LDH65_17705 PF13332 Hemagglutinin repeat LDH65_17710 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB LDH65_17710 PF17287 POTRA domain LDH65_17710 PF08479 POTRA domain, ShlB-type LDH65_17715 PF00092 von Willebrand factor type A domain LDH65_17720 PF02342 TerD domain LDH65_17745 PF03729 Short repeat of unknown function (DUF308) LDH65_17750 PF07992 Pyridine nucleotide-disulphide oxidoreductase LDH65_17750 PF00724 NADH:flavin oxidoreductase / NADH oxidase family LDH65_17755 PF05175 Methyltransferase small domain LDH65_17760 PF03797 Autotransporter beta-domain LDH65_17765 PF01863 Protein of unknown function DUF45 LDH65_17770 PF01408 Oxidoreductase family, NAD-binding Rossmann fold LDH65_17775 PF00375 Sodium:dicarboxylate symporter family LDH65_17780 PF01797 Transposase IS200 like LDH65_17785 PF10688 Bacterial inner membrane protein LDH65_17790 PF08666 SAF domain LDH65_17790 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus LDH65_17795 PF08125 Mannitol dehydrogenase C-terminal domain LDH65_17795 PF01232 Mannitol dehydrogenase Rossmann domain LDH65_17800 PF02614 Glucuronate isomerase LDH65_17805 PF07690 Major Facilitator Superfamily LDH65_17810 PF00392 Bacterial regulatory proteins, gntR family LDH65_17810 PF07729 FCD domain LDH65_17820 PF09335 SNARE associated Golgi protein LDH65_17825 PF13721 SecD export protein N-terminal TM region LDH65_17835 PF05957 Bacterial protein of unknown function (DUF883) LDH65_17840 PF07332 Putative Actinobacterial Holin-X, holin superfamily III LDH65_17850 PF07681 DoxX LDH65_17860 PF02796 Helix-turn-helix domain of resolvase LDH65_17860 PF00665 Integrase core domain LDH65_17865 PF01695 IstB-like ATP binding protein LDH65_17870 PF00293 NUDIX domain LDH65_17880 PF07517 SecA DEAD-like domain LDH65_17880 PF01043 SecA preprotein cross-linking domain LDH65_17880 PF07516 SecA Wing and Scaffold domain LDH65_17880 PF02810 SEC-C motif LDH65_17885 PF06558 Secretion monitor precursor protein (SecM) LDH65_17895 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase LDH65_17900 PF00091 Tubulin/FtsZ family, GTPase domain LDH65_17900 PF12327 FtsZ family, C-terminal domain LDH65_17905 PF02491 SHS2 domain inserted in FTSA LDH65_17910 PF03799 Cell division protein FtsQ LDH65_17910 PF08478 POTRA domain, FtsQ-type LDH65_17915 PF07478 D-ala D-ala ligase C-terminus LDH65_17915 PF01820 D-ala D-ala ligase N-terminus LDH65_17920 PF01225 Mur ligase family, catalytic domain LDH65_17920 PF02875 Mur ligase family, glutamate ligase domain LDH65_17920 PF08245 Mur ligase middle domain LDH65_17925 PF04101 Glycosyltransferase family 28 C-terminal domain LDH65_17925 PF03033 Glycosyltransferase family 28 N-terminal domain LDH65_17930 PF01098 Cell cycle protein LDH65_17935 PF02875 Mur ligase family, glutamate ligase domain LDH65_17935 PF08245 Mur ligase middle domain LDH65_17940 PF00953 Glycosyl transferase family 4 LDH65_17940 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 LDH65_17945 PF01225 Mur ligase family, catalytic domain LDH65_17945 PF02875 Mur ligase family, glutamate ligase domain LDH65_17945 PF08245 Mur ligase middle domain LDH65_17950 PF01225 Mur ligase family, catalytic domain LDH65_17950 PF02875 Mur ligase family, glutamate ligase domain LDH65_17950 PF08245 Mur ligase middle domain LDH65_17955 PF03717 Penicillin-binding Protein dimerisation domain LDH65_17955 PF00905 Penicillin binding protein transpeptidase domain LDH65_17960 PF04999 Cell division protein FtsL LDH65_17965 PF01795 MraW methylase family LDH65_17970 PF02381 MraZ protein, putative antitoxin-like LDH65_17980 PF06610 L-alanine exporter LDH65_17985 PF00356 Bacterial regulatory proteins, lacI family LDH65_17985 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family LDH65_17990 PF01797 Transposase IS200 like LDH65_18000 PF10369 Small subunit of acetolactate synthase LDH65_18005 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain LDH65_18005 PF00205 Thiamine pyrophosphate enzyme, central domain LDH65_18005 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain LDH65_18010 PF00501 AMP-binding enzyme LDH65_18015 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LDH65_18015 PF03466 LysR substrate binding domain LDH65_18025 PF01797 Transposase IS200 like LDH65_18030 PF00682 HMGL-like LDH65_18030 PF08502 LeuA allosteric (dimerisation) domain LDH65_18035 PF00180 Isocitrate/isopropylmalate dehydrogenase LDH65_18040 PF00330 Aconitase family (aconitate hydratase) LDH65_18045 PF00694 Aconitase C-terminal domain LDH65_18050 PF07690 Major Facilitator Superfamily LDH65_18055 PF02796 Helix-turn-helix domain of resolvase LDH65_18055 PF00665 Integrase core domain LDH65_18060 PF01695 IstB-like ATP binding protein LDH65_18070 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle LDH65_18070 PF12793 Sugar transport-related sRNA regulator N-term LDH65_18085 PF00528 Binding-protein-dependent transport system inner membrane component LDH65_18090 PF00005 ABC transporter LDH65_18095 PF09335 SNARE associated Golgi protein LDH65_18100 PF03104 DNA polymerase family B, exonuclease domain LDH65_18100 PF00136 DNA polymerase family B LDH65_18105 PF18337 RapA N-terminal Tudor like domain LDH65_18105 PF18339 RapA N-terminal Tudor like domain 1 LDH65_18105 PF00176 SNF2 family N-terminal domain LDH65_18105 PF12137 RNA polymerase recycling family C-terminal LDH65_18105 PF00271 Helicase conserved C-terminal domain LDH65_18120 PF06761 Intracellular multiplication and human macrophage-killing LDH65_18120 PF06744 Type VI secretion protein IcmF C-terminal LDH65_18120 PF14331 ImcF-related N-terminal domain LDH65_18125 PF05736 OprF membrane domain LDH65_18125 PF00691 OmpA family LDH65_18130 PF05936 Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE LDH65_18165 PF06715 Gp5 C-terminal repeat (3 copies) LDH65_18165 PF04717 Type VI secretion system, phage-baseplate injector LDH65_18170 PF00004 ATPase family associated with various cellular activities (AAA) LDH65_18170 PF07724 AAA domain (Cdc48 subfamily) LDH65_18170 PF17871 AAA lid domain LDH65_18170 PF10431 C-terminal, D2-small domain, of ClpB protein LDH65_18180 PF05947 Type VI secretion system, TssF LDH65_18195 PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath LDH65_18200 PF05591 Type VI secretion system, VipA, VC_A0107 or Hcp2 LDH65_18215 PF00849 RNA pseudouridylate synthase LDH65_18220 PF00226 DnaJ domain LDH65_18220 PF05099 Tellurite resistance protein TerB LDH65_18225 PF04453 LPS transport system D LDH65_18225 PF03968 OstA-like protein LDH65_18230 PF00639 PPIC-type PPIASE domain LDH65_18230 PF09312 SurA N-terminal domain LDH65_18235 PF04166 Pyridoxal phosphate biosynthetic protein PdxA LDH65_18240 PF00398 Ribosomal RNA adenine dimethylase LDH65_18245 PF04379 ApaG domain LDH65_18250 PF00149 Calcineurin-like phosphoesterase LDH65_18265 PF01797 Transposase IS200 like LDH65_18270 PF00186 Dihydrofolate reductase LDH65_18275 PF12821 Threonine/Serine exporter, ThrE LDH65_18280 PF06738 Putative threonine/serine exporter LDH65_18285 PF01810 LysE type translocator LDH65_18290 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain LDH65_18290 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain LDH65_18290 PF02142 MGS-like domain LDH65_18295 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain LDH65_18295 PF00117 Glutamine amidotransferase class-I LDH65_18300 PF01113 Dihydrodipicolinate reductase, N-terminus LDH65_18300 PF05173 Dihydrodipicolinate reductase, C-terminus LDH65_18305 PF01797 Transposase IS200 like LDH65_18310 PF02401 LytB protein LDH65_18315 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase LDH65_18320 PF01252 Signal peptidase (SPase) II LDH65_18325 PF00133 tRNA synthetases class I (I, L, M and V) LDH65_18325 PF06827 Zinc finger found in FPG and IleRS LDH65_18325 PF08264 Anticodon-binding domain of tRNA LDH65_18330 PF06574 FAD synthetase LDH65_18330 PF01687 Riboflavin kinase LDH65_18335 PF01649 Ribosomal protein S20 LDH65_18340 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LDH65_18340 PF03466 LysR substrate binding domain LDH65_18345 PF06965 Na+/H+ antiporter 1 LDH65_18350 PF01556 DnaJ C terminal domain LDH65_18350 PF00684 DnaJ central domain LDH65_18350 PF00226 DnaJ domain LDH65_18355 PF00012 Hsp70 protein LDH65_18360 PF01184 GPR1/FUN34/yaaH family LDH65_18370 PF07690 Major Facilitator Superfamily LDH65_18375 PF00994 Probable molybdopterin binding domain LDH65_18380 PF00923 Transaldolase/Fructose-6-phosphate aldolase LDH65_18390 PF03883 Peroxide stress protein YaaA LDH65_18395 PF14821 Threonine synthase N terminus LDH65_18395 PF00291 Pyridoxal-phosphate dependent enzyme LDH65_18400 PF08544 GHMP kinases C terminal LDH65_18400 PF00288 GHMP kinases N terminal domain LDH65_18405 PF00696 Amino acid kinase family LDH65_18405 PF01842 ACT domain LDH65_18405 PF13840 ACT domain LDH65_18405 PF00742 Homoserine dehydrogenase LDH65_18405 PF03447 Homoserine dehydrogenase, NAD binding domain LDH65_18410 PF08254 Threonine leader peptide LDH65_18420 PF00486 Transcriptional regulatory protein, C terminal LDH65_18420 PF00072 Response regulator receiver domain LDH65_18425 PF05981 CreA protein LDH65_18430 PF06445 GyrI-like small molecule binding domain LDH65_18430 PF12833 Helix-turn-helix domain LDH65_18435 PF00300 Histidine phosphatase superfamily (branch 1) LDH65_18440 PF01931 Protein of unknown function DUF84 LDH65_18445 PF01371 Trp repressor protein LDH65_18450 PF01464 Transglycosylase SLT domain LDH65_18450 PF14718 Soluble lytic murein transglycosylase L domain LDH65_18455 PF00690 Cation transporter/ATPase, N-terminus LDH65_18455 PF00689 Cation transporting ATPase, C-terminus LDH65_18465 PF00990 Diguanylate cyclase, GGDEF domain LDH65_18465 PF17152 Periplasmic sensor domain LDH65_18470 PF00691 OmpA family LDH65_18480 PF02661 Fic/DOC family LDH65_18485 PF01381 Helix-turn-helix LDH65_18485 PF13521 AAA domain LDH65_18490 PF18073 Rubredoxin metal binding domain LDH65_18495 PF18429 Domain of unknown function (DUF5609) LDH65_18500 PF10144 Bacterial virulence factor haemolysin LDH65_18505 PF01048 Phosphorylase superfamily LDH65_18510 PF01676 Metalloenzyme superfamily LDH65_18520 PF01791 DeoC/LacD family aldolase LDH65_18525 PF07662 Na+ dependent nucleoside transporter C-terminus LDH65_18525 PF01773 Na+ dependent nucleoside transporter N-terminus LDH65_18525 PF07670 Nucleoside recognition LDH65_18530 PF01026 TatD related DNase LDH65_18535 PF01734 Patatin-like phospholipase LDH65_18540 PF07043 Protein of unknown function (DUF1328) LDH65_18545 PF04972 BON domain LDH65_18550 PF00009 Elongation factor Tu GTP binding domain LDH65_18550 PF03144 Elongation factor Tu domain 2 LDH65_18550 PF16658 Class II release factor RF3, C-terminal domain LDH65_18555 PF00583 Acetyltransferase (GNAT) family LDH65_18560 PF03603 DNA polymerase III psi subunit LDH65_18565 PF05175 Methyltransferase small domain LDH65_18565 PF08468 Methyltransferase small domain N-terminal LDH65_18575 PF07256 Protein of unknown function (DUF1435) LDH65_18580 PF00990 Diguanylate cyclase, GGDEF domain LDH65_18585 PF01095 Pectinesterase LDH65_18600 PF00873 AcrB/AcrD/AcrF family LDH65_18605 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LDH65_18620 PF01075 Glycosyltransferase family 9 (heptosyltransferase) LDH65_18625 PF02782 FGGY family of carbohydrate kinases, C-terminal domain LDH65_18625 PF00370 FGGY family of carbohydrate kinases, N-terminal domain LDH65_18640 PF00005 ABC transporter LDH65_18645 PF02653 Branched-chain amino acid transport system / permease component LDH65_18650 PF02653 Branched-chain amino acid transport system / permease component LDH65_18655 PF13407 Periplasmic binding protein domain LDH65_18660 PF01791 DeoC/LacD family aldolase LDH65_18665 PF03992 Antibiotic biosynthesis monooxygenase LDH65_18670 PF10696 Protein of unknown function (DUF2501) LDH65_18675 PF05524 PEP-utilising enzyme, N-terminal LDH65_18675 PF00391 PEP-utilising enzyme, mobile domain LDH65_18675 PF02896 PEP-utilising enzyme, TIM barrel domain LDH65_18675 PF00381 PTS HPr component phosphorylation site LDH65_18675 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 LDH65_18685 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit LDH65_18690 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit LDH65_18695 PF12833 Helix-turn-helix domain LDH65_18705 PF05987 Bacterial protein of unknown function (DUF898) LDH65_18720 PF00665 Integrase core domain LDH65_18745 PF01555 DNA methylase LDH65_18760 PF12102 Domain of unknown function (DUF3578) LDH65_18760 PF07728 AAA domain (dynein-related subfamily) LDH65_18765 PF02796 Helix-turn-helix domain of resolvase LDH65_18765 PF00665 Integrase core domain LDH65_18770 PF01695 IstB-like ATP binding protein LDH65_18775 PF07338 Protein of unknown function (DUF1471) LDH65_18780 PF00441 Acyl-CoA dehydrogenase, C-terminal domain LDH65_18780 PF02770 Acyl-CoA dehydrogenase, middle domain LDH65_18780 PF18158 Adaptive response protein AidB N-terminal domain LDH65_18785 PF00588 SpoU rRNA Methylase family LDH65_18785 PF08032 RNA 2'-O ribose methyltransferase substrate binding LDH65_18790 PF08206 Ribonuclease B OB domain LDH65_18790 PF00773 RNB domain LDH65_18790 PF00575 S1 RNA binding domain LDH65_18790 PF08461 Ribonuclease R winged-helix domain LDH65_18790 PF17876 Cold shock domain LDH65_18795 PF02082 Transcriptional regulator LDH65_18800 PF00709 Adenylosuccinate synthetase LDH65_18805 PF09838 Uncharacterized protein conserved in bacteria (DUF2065) LDH65_18810 PF01145 SPFH domain / Band 7 family LDH65_18815 PF01145 SPFH domain / Band 7 family LDH65_18815 PF12221 Bacterial membrane protein N terminal LDH65_18820 PF16360 GTP-binding GTPase Middle Region LDH65_18820 PF01926 50S ribosome-binding GTPase LDH65_18820 PF13167 GTP-binding GTPase N-terminal LDH65_18825 PF17209 Hfq protein LDH65_18835 PF01119 DNA mismatch repair protein, C-terminal domain LDH65_18835 PF08676 MutL C terminal dimerisation domain LDH65_18840 PF01520 N-acetylmuramoyl-L-alanine amidase LDH65_18845 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE LDH65_18850 PF01256 Carbohydrate kinase LDH65_18850 PF03853 YjeF-related protein N-terminus LDH65_18855 PF08331 Domain of unknown function (DUF1730) LDH65_18870 PF00929 Exonuclease LDH65_18875 PF03193 RsgA GTPase LDH65_18880 PF02666 Phosphatidylserine decarboxylase LDH65_18885 PF00924 Mechanosensitive ion channel LDH65_18885 PF12795 Mechanosensitive ion channel porin domain LDH65_18885 PF12794 Mechanosensitive ion channel inner membrane domain 1 LDH65_18890 PF00152 tRNA synthetases class II (D, K and N) LDH65_18900 PF00890 FAD binding domain LDH65_18900 PF02910 Fumarate reductase flavoprotein C-term LDH65_18905 PF13085 2Fe-2S iron-sulfur cluster binding domain LDH65_18905 PF13183 4Fe-4S dicluster domain LDH65_18910 PF02300 Fumarate reductase subunit C LDH65_18915 PF02313 Fumarate reductase subunit D LDH65_18920 PF00893 Small Multidrug Resistance protein LDH65_18925 PF01132 Elongation factor P (EF-P) OB domain LDH65_18925 PF09285 Elongation factor P, C-terminal LDH65_18925 PF08207 Elongation factor P (EF-P) KOW-like domain LDH65_18930 PF04055 Radical SAM superfamily LDH65_18935 PF13698 Domain of unknown function (DUF4156) LDH65_18940 PF00118 TCP-1/cpn60 chaperonin family LDH65_18945 PF00166 Chaperonin 10 Kd subunit LDH65_18950 PF04186 FxsA cytoplasmic membrane protein LDH65_18955 PF10415 Fumarase C C-terminus LDH65_18955 PF00206 Lyase LDH65_18960 PF03605 Anaerobic c4-dicarboxylate membrane transporter LDH65_18965 PF03091 CutA1 divalent ion tolerance protein LDH65_18970 PF11412 Disulphide bond corrector protein DsbC LDH65_18970 PF02683 Cytochrome C biogenesis protein transmembrane region LDH65_18975 PF04879 Molybdopterin oxidoreductase Fe4S4 domain LDH65_18975 PF00384 Molybdopterin oxidoreductase LDH65_18975 PF01568 Molydopterin dinucleotide binding domain LDH65_18980 PF13247 4Fe-4S dicluster domain LDH65_18980 PF12800 4Fe-4S binding domain LDH65_18985 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster LDH65_18985 PF13247 4Fe-4S dicluster domain LDH65_18985 PF07992 Pyridine nucleotide-disulphide oxidoreductase LDH65_19020 PF06379 L-rhamnose-proton symport protein (RhaT) LDH65_19025 PF02311 AraC-like ligand binding domain LDH65_19025 PF12833 Helix-turn-helix domain LDH65_19030 PF02311 AraC-like ligand binding domain LDH65_19030 PF12833 Helix-turn-helix domain LDH65_19040 PF00370 FGGY family of carbohydrate kinases, N-terminal domain LDH65_19040 PF02782 FGGY family of carbohydrate kinases, C-terminal domain LDH65_19045 PF06134 L-rhamnose isomerase (RhaA) LDH65_19050 PF00596 Class II Aldolase and Adducin N-terminal domain LDH65_19055 PF00465 Iron-containing alcohol dehydrogenase LDH65_19060 PF05336 L-rhamnose mutarotase LDH65_19065 PF00436 Single-strand binding protein family LDH65_19070 PF00005 ABC transporter LDH65_19070 PF17760 UvrA interaction domain LDH65_19070 PF17755 UvrA DNA-binding domain LDH65_19075 PF04237 YjbR LDH65_19080 PF00155 Aminotransferase class I and II LDH65_19085 PF01168 Alanine racemase, N-terminal domain LDH65_19085 PF00842 Alanine racemase, C-terminal domain LDH65_19090 PF00772 DnaB-like helicase N terminal domain LDH65_19090 PF03796 DnaB-like helicase C terminal domain LDH65_19095 PF08240 Alcohol dehydrogenase GroES-like domain LDH65_19095 PF00107 Zinc-binding dehydrogenase LDH65_19100 PF09583 Phage shock protein G (Phageshock_PspG) LDH65_19105 PF01207 Dihydrouridine synthase (Dus) LDH65_19110 PF01475 Ferric uptake regulator family LDH65_19115 PF00717 Peptidase S24-like LDH65_19115 PF01726 LexA DNA binding domain LDH65_19120 PF01219 Prokaryotic diacylglycerol kinase LDH65_19125 PF01553 Acyltransferase LDH65_19130 PF01040 UbiA prenyltransferase family LDH65_19135 PF04345 Chorismate lyase LDH65_19140 PF12951 Passenger-associated-transport-repeat LDH65_19145 PF08031 Berberine and berberine like LDH65_19145 PF01565 FAD binding domain LDH65_19160 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain LDH65_19165 PF13953 PapC C-terminal domain LDH65_19165 PF13954 PapC N-terminal domain LDH65_19165 PF00577 Outer membrane usher protein LDH65_19175 PF02342 TerD domain LDH65_19180 PF02342 TerD domain LDH65_19185 PF03741 Integral membrane protein TerC family LDH65_19190 PF05099 Tellurite resistance protein TerB LDH65_19195 PF02342 TerD domain LDH65_19200 PF02342 TerD domain LDH65_19220 PF15608 PELOTA RNA binding domain LDH65_19220 PF11202 Phosphoribosyl transferase (PRTase) LDH65_19240 PF04055 Radical SAM superfamily LDH65_19245 PF06228 Haem utilisation ChuX/HutX LDH65_19250 PF13460 NAD(P)H-binding LDH65_19255 PF10636 Hemin uptake protein hemP LDH65_19260 PF07715 TonB-dependent Receptor Plug Domain LDH65_19260 PF00593 TonB dependent receptor LDH65_19265 PF05171 Haemin-degrading HemS.ChuX domain LDH65_19270 PF01497 Periplasmic binding protein LDH65_19275 PF01032 FecCD transport family LDH65_19280 PF00005 ABC transporter LDH65_19285 PF01053 Cys/Met metabolism PLP-dependent enzyme LDH65_19290 PF03222 Tryptophan/tyrosine permease family LDH65_19295 PF03466 LysR substrate binding domain LDH65_19295 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LDH65_19300 PF01206 Sulfurtransferase TusA LDH65_19305 PF04143 Sulphur transport LDH65_19315 PF01312 FlhB HrpN YscU SpaS Family LDH65_19320 PF01311 Bacterial export proteins, family 1 LDH65_19325 PF01313 Bacterial export proteins, family 3 LDH65_19330 PF00813 FliP family LDH65_19335 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term LDH65_19350 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain LDH65_19350 PF18269 T3SS EscN ATPase C-terminal domain LDH65_19355 PF00771 FHIPEP family LDH65_19370 PF01514 Secretory protein of YscJ/FliF family LDH65_19405 PF00263 Bacterial type II and III secretion system protein LDH65_19405 PF03958 Bacterial type II/III secretion system short domain LDH65_19410 PF00672 HAMP domain LDH65_19410 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LDH65_19410 PF00512 His Kinase A (phospho-acceptor) domain LDH65_19410 PF01627 Hpt domain LDH65_19410 PF00072 Response regulator receiver domain LDH65_19410 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) LDH65_19415 PF00196 Bacterial regulatory proteins, luxR family LDH65_19415 PF00072 Response regulator receiver domain LDH65_19420 PF00375 Sodium:dicarboxylate symporter family LDH65_19425 PF13193 AMP-binding enzyme C-terminal domain LDH65_19425 PF16177 Acetyl-coenzyme A synthetase N-terminus LDH65_19425 PF00501 AMP-binding enzyme LDH65_19430 PF04341 Protein of unknown function, DUF485 LDH65_19435 PF00474 Sodium:solute symporter family LDH65_19445 PF00665 Integrase core domain LDH65_19445 PF02796 Helix-turn-helix domain of resolvase LDH65_19450 PF01695 IstB-like ATP binding protein LDH65_19455 PF00132 Bacterial transferase hexapeptide (six repeats) LDH65_19460 PF18317 Shikimate 5'-dehydrogenase C-terminal domain LDH65_19460 PF08501 Shikimate dehydrogenase substrate binding domain LDH65_19460 PF01488 Shikimate / quinate 5-dehydrogenase LDH65_19465 PF01300 Telomere recombination LDH65_19470 PF01396 Topoisomerase DNA binding C4 zinc finger LDH65_19475 PF04361 Protein of unknown function (DUF494) LDH65_19480 PF02481 DNA recombination-mediator protein A LDH65_19480 PF17782 DprA winged helix domain LDH65_19485 PF01327 Polypeptide deformylase LDH65_19490 PF02911 Formyl transferase, C-terminal domain LDH65_19490 PF00551 Formyl transferase LDH65_19495 PF01029 NusB family LDH65_19495 PF01189 16S rRNA methyltransferase RsmB/F LDH65_19500 PF02254 TrkA-N domain LDH65_19500 PF02080 TrkA-C domain LDH65_19505 PF01741 Large-conductance mechanosensitive channel, MscL LDH65_19510 PF03889 Alternative ribosome-rescue factor A LDH65_19515 PF13411 MerR HTH family regulatory protein LDH65_19520 PF01196 Ribosomal protein L17 LDH65_19525 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain LDH65_19525 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain LDH65_19525 PF01000 RNA polymerase Rpb3/RpoA insert domain LDH65_19530 PF00163 Ribosomal protein S4/S9 N-terminal domain LDH65_19530 PF01479 S4 domain LDH65_19535 PF00411 Ribosomal protein S11 LDH65_19540 PF00416 Ribosomal protein S13/S18 LDH65_19545 PF00444 Ribosomal protein L36 LDH65_19550 PF00344 SecY translocase LDH65_19555 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A LDH65_19560 PF00327 Ribosomal protein L30p/L7e LDH65_19565 PF00333 Ribosomal protein S5, N-terminal domain LDH65_19565 PF03719 Ribosomal protein S5, C-terminal domain LDH65_19570 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast LDH65_19575 PF00347 Ribosomal protein L6 LDH65_19580 PF00410 Ribosomal protein S8 LDH65_19585 PF00253 Ribosomal protein S14p/S29e LDH65_19590 PF00673 ribosomal L5P family C-terminus LDH65_19590 PF00281 Ribosomal protein L5 LDH65_19595 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 LDH65_19595 PF00467 KOW motif LDH65_19600 PF00238 Ribosomal protein L14p/L23e LDH65_19605 PF00366 Ribosomal protein S17 LDH65_19610 PF00831 Ribosomal L29 protein LDH65_19615 PF00252 Ribosomal protein L16p/L10e LDH65_19620 PF07650 KH domain LDH65_19620 PF00189 Ribosomal protein S3, C-terminal domain LDH65_19625 PF00237 Ribosomal protein L22p/L17e LDH65_19630 PF00203 Ribosomal protein S19 LDH65_19635 PF03947 Ribosomal Proteins L2, C-terminal domain LDH65_19635 PF00181 Ribosomal Proteins L2, RNA binding domain LDH65_19640 PF00276 Ribosomal protein L23 LDH65_19645 PF00573 Ribosomal protein L4/L1 family LDH65_19650 PF00297 Ribosomal protein L3 LDH65_19655 PF00338 Ribosomal protein S10p/S20e LDH65_19660 PF00210 Ferritin-like domain LDH65_19665 PF04324 BFD-like [2Fe-2S] binding domain LDH65_19670 PF01797 Transposase IS200 like LDH65_19675 PF03143 Elongation factor Tu C-terminal domain LDH65_19675 PF00009 Elongation factor Tu GTP binding domain LDH65_19675 PF03144 Elongation factor Tu domain 2 LDH65_19680 PF03764 Elongation factor G, domain IV LDH65_19680 PF00679 Elongation factor G C-terminus LDH65_19680 PF14492 Elongation Factor G, domain II LDH65_19680 PF00009 Elongation factor Tu GTP binding domain LDH65_19680 PF03144 Elongation factor Tu domain 2 LDH65_19685 PF00177 Ribosomal protein S7p/S5e LDH65_19690 PF00164 Ribosomal protein S12/S23 LDH65_19695 PF04077 DsrH like protein LDH65_19700 PF02635 DsrE/DsrF-like family LDH65_19705 PF02635 DsrE/DsrF-like family LDH65_19710 PF13309 HTH domain LDH65_19710 PF08348 YheO-like PAS domain LDH65_19715 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase LDH65_19715 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase LDH65_19720 PF04102 SlyX LDH65_19725 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase LDH65_19730 PF09526 Probable metal-binding protein (DUF2387) LDH65_19735 PF02254 TrkA-N domain LDH65_19735 PF00999 Sodium/hydrogen exchanger family LDH65_19740 PF02525 Flavodoxin-like fold LDH65_19750 PF00535 Glycosyl transferase family 2 LDH65_19760 PF02668 Taurine catabolism dioxygenase TauD, TfdA family LDH65_19765 PF00528 Binding-protein-dependent transport system inner membrane component LDH65_19770 PF00005 ABC transporter LDH65_19775 PF04069 Substrate binding domain of ABC-type glycine betaine transport system LDH65_19780 PF01810 LysE type translocator LDH65_19785 PF00561 alpha/beta hydrolase fold LDH65_19790 PF06794 Uncharacterised protein family (UPF0270) LDH65_19795 PF00485 Phosphoribulokinase / Uridine kinase family LDH65_19805 PF02566 OsmC-like protein LDH65_19810 PF13545 Crp-like helix-turn-helix domain LDH65_19810 PF00027 Cyclic nucleotide-binding domain LDH65_19815 PF12805 FUSC-like inner membrane protein yccS LDH65_19820 PF00202 Aminotransferase class-III LDH65_19825 PF00117 Glutamine amidotransferase class-I LDH65_19830 PF05872 Bacterial protein of unknown function (DUF853) LDH65_19835 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD LDH65_19840 PF02056 Family 4 glycosyl hydrolase LDH65_19840 PF11975 Family 4 glycosyl hydrolase C-terminal domain LDH65_19845 PF00356 Bacterial regulatory proteins, lacI family LDH65_19855 PF07690 Major Facilitator Superfamily LDH65_19860 PF07969 Amidohydrolase family LDH65_19865 PF04324 BFD-like [2Fe-2S] binding domain LDH65_19865 PF01077 Nitrite and sulphite reductase 4Fe-4S domain LDH65_19865 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain LDH65_19865 PF07992 Pyridine nucleotide-disulphide oxidoreductase LDH65_19865 PF18267 Rubredoxin NAD+ reductase C-terminal domain LDH65_19870 PF13806 Rieske-like [2Fe-2S] domain LDH65_19875 PF01226 Formate/nitrite transporter LDH65_19880 PF10414 Sirohaem synthase dimerisation region LDH65_19880 PF14824 Sirohaem biosynthesis protein central LDH65_19880 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases LDH65_19885 PF00579 tRNA synthetases class I (W and Y) LDH65_19890 PF13419 Haloacid dehalogenase-like hydrolase LDH65_19895 PF00834 Ribulose-phosphate 3 epimerase family LDH65_19900 PF02086 D12 class N6 adenine-specific DNA methyltransferase LDH65_19905 PF05036 Sporulation related domain LDH65_19910 PF01761 3-dehydroquinate synthase LDH65_19915 PF01202 Shikimate kinase LDH65_19920 PF00263 Bacterial type II and III secretion system protein LDH65_19920 PF03958 Bacterial type II/III secretion system short domain LDH65_19950 PF00905 Penicillin binding protein transpeptidase domain LDH65_19950 PF00912 Transglycosylase LDH65_19950 PF17092 Penicillin-binding protein OB-like domain LDH65_19955 PF00293 NUDIX domain LDH65_19960 PF07095 Intracellular growth attenuator protein IgaA LDH65_19965 PF13419 Haloacid dehalogenase-like hydrolase LDH65_19970 PF01479 S4 domain LDH65_19975 PF01430 Hsp33 protein LDH65_19980 PF01293 Phosphoenolpyruvate carboxykinase LDH65_19985 PF00512 His Kinase A (phospho-acceptor) domain LDH65_19985 PF00672 HAMP domain LDH65_19985 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LDH65_19990 PF00072 Response regulator receiver domain LDH65_19990 PF00486 Transcriptional regulatory protein, C terminal LDH65_19995 PF01272 Transcription elongation factor, GreA/GreB, C-term LDH65_19995 PF03449 Transcription elongation factor, N-terminal LDH65_20000 PF00575 S1 RNA binding domain LDH65_20000 PF17674 HHH domain LDH65_20000 PF09371 Tex-like protein N-terminal domain LDH65_20000 PF16921 Tex protein YqgF-like domain LDH65_20005 PF04023 FeoA domain LDH65_20010 PF07664 Ferrous iron transport protein B C terminus LDH65_20010 PF02421 Ferrous iron transport protein B LDH65_20010 PF07670 Nucleoside recognition LDH65_20010 PF17910 FeoB cytosolic helical domain LDH65_20015 PF09012 FeoC like transcriptional regulator LDH65_20020 PF07338 Protein of unknown function (DUF1471) LDH65_20025 PF00561 alpha/beta hydrolase fold LDH65_20030 PF00156 Phosphoribosyl transferase domain LDH65_20035 PF01521 Iron-sulphur cluster biosynthesis LDH65_20035 PF01106 NifU-like domain LDH65_20040 PF02446 4-alpha-glucanotransferase LDH65_20050 PF00196 Bacterial regulatory proteins, luxR family LDH65_20050 PF17874 MalT-like TPR region LDH65_20055 PF00581 Rhodanese-like domain LDH65_20060 PF01694 Rhomboid family LDH65_20060 PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease LDH65_20065 PF00455 DeoR C terminal sensor domain LDH65_20065 PF08220 DeoR-like helix-turn-helix domain LDH65_20075 PF02219 Methylenetetrahydrofolate reductase LDH65_20080 PF00696 Amino acid kinase family LDH65_20080 PF03447 Homoserine dehydrogenase, NAD binding domain LDH65_20080 PF00742 Homoserine dehydrogenase LDH65_20090 PF01340 Met Apo-repressor, MetJ LDH65_20095 PF05360 yiaA/B two helix domain LDH65_20100 PF01197 Ribosomal protein L31 LDH65_20105 PF00270 DEAD/DEAH box helicase LDH65_20105 PF00271 Helicase conserved C-terminal domain LDH65_20105 PF17764 3′ DNA-binding domain (3′BD) LDH65_20105 PF18074 Primosomal protein N C-terminal domain LDH65_20105 PF18319 PriA DNA helicase Cys-rich region (CRR) domain LDH65_20115 PF00356 Bacterial regulatory proteins, lacI family LDH65_20120 PF05036 Sporulation related domain LDH65_20125 PF00227 Proteasome subunit LDH65_20130 PF10431 C-terminal, D2-small domain, of ClpB protein LDH65_20130 PF00004 ATPase family associated with various cellular activities (AAA) LDH65_20130 PF07724 AAA domain (Cdc48 subfamily) LDH65_20135 PF01040 UbiA prenyltransferase family LDH65_20140 PF03737 Aldolase/RraA LDH65_20155 PF00529 HlyD membrane-fusion protein of T1SS LDH65_20155 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LDH65_20160 PF00664 ABC transporter transmembrane region LDH65_20160 PF00005 ABC transporter LDH65_20160 PF03412 Peptidase C39 family LDH65_20170 PF06005 Cell division protein ZapB LDH65_20175 PF00230 Major intrinsic protein LDH65_20180 PF02782 FGGY family of carbohydrate kinases, C-terminal domain LDH65_20180 PF00370 FGGY family of carbohydrate kinases, N-terminal domain LDH65_20185 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded LDH65_20190 PF00175 Oxidoreductase NAD-binding domain LDH65_20190 PF00970 Oxidoreductase FAD-binding domain LDH65_20195 PF05656 Protein of unknown function (DUF805) LDH65_20200 PF07305 Protein of unknown function (DUF1454) LDH65_20205 PF00121 Triosephosphate isomerase LDH65_20210 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LDH65_20210 PF03466 LysR substrate binding domain LDH65_20215 PF02585 GlcNAc-PI de-N-acetylase LDH65_20220 PF03737 Aldolase/RraA LDH65_20225 PF00939 Sodium:sulfate symporter transmembrane region LDH65_20240 PF02796 Helix-turn-helix domain of resolvase LDH65_20240 PF00665 Integrase core domain LDH65_20245 PF01695 IstB-like ATP binding protein LDH65_20255 PF00365 Phosphofructokinase LDH65_20260 PF01545 Cation efflux family LDH65_20260 PF16916 Dimerisation domain of Zinc Transporter LDH65_20270 PF04754 Putative transposase, YhgA-like LDH65_20285 PF07813 LTXXQ motif family protein LDH65_20290 PF00486 Transcriptional regulatory protein, C terminal LDH65_20290 PF00072 Response regulator receiver domain LDH65_20295 PF16527 Two-component sensor protein CpxA, periplasmic domain LDH65_20295 PF00672 HAMP domain LDH65_20295 PF00512 His Kinase A (phospho-acceptor) domain LDH65_20295 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LDH65_20300 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain LDH65_20300 PF02805 Metal binding domain of Ada LDH65_20300 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain LDH65_20300 PF12833 Helix-turn-helix domain LDH65_20305 PF00588 SpoU rRNA Methylase family LDH65_20310 PF00132 Bacterial transferase hexapeptide (six repeats) LDH65_20310 PF06426 Serine acetyltransferase, N-terminal LDH65_20315 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus LDH65_20315 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus LDH65_20320 PF02556 Preprotein translocase subunit SecB LDH65_20325 PF00462 Glutaredoxin LDH65_20330 PF00581 Rhodanese-like domain LDH65_20335 PF01676 Metalloenzyme superfamily LDH65_20335 PF06415 BPG-independent PGAM N-terminus (iPGM_N) LDH65_20340 PF01551 Peptidase family M23 LDH65_20350 PF08240 Alcohol dehydrogenase GroES-like domain LDH65_20350 PF00107 Zinc-binding dehydrogenase LDH65_20355 PF00155 Aminotransferase class I and II LDH65_20360 PF01370 NAD dependent epimerase/dehydratase family LDH65_20365 PF01075 Glycosyltransferase family 9 (heptosyltransferase) LDH65_20370 PF01075 Glycosyltransferase family 9 (heptosyltransferase) LDH65_20375 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) LDH65_20380 PF00535 Glycosyl transferase family 2 LDH65_20385 PF01467 Cytidylyltransferase-like LDH65_20390 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain LDH65_20390 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain LDH65_20390 PF06827 Zinc finger found in FPG and IleRS LDH65_20395 PF00471 Ribosomal protein L33 LDH65_20400 PF00830 Ribosomal L28 family LDH65_20405 PF04002 RadC-like JAB domain LDH65_20410 PF02441 Flavoprotein LDH65_20410 PF04127 DNA / pantothenate metabolism flavoprotein LDH65_20415 PF00692 dUTPase LDH65_20420 PF00440 Bacterial regulatory proteins, tetR family LDH65_20425 PF00156 Phosphoribosyl transferase domain LDH65_20430 PF03725 3' exoribonuclease family, domain 2 LDH65_20430 PF01138 3' exoribonuclease family, domain 1 LDH65_20435 PF08340 Domain of unknown function (DUF1732) LDH65_20435 PF03755 YicC-like family, N-terminal region LDH65_20440 PF03458 UPF0126 domain LDH65_20445 PF03120 NAD-dependent DNA ligase OB-fold domain LDH65_20445 PF01653 NAD-dependent DNA ligase adenylation domain LDH65_20450 PF00625 Guanylate kinase LDH65_20455 PF01192 RNA polymerase Rpb6 LDH65_20460 PF02824 TGS domain LDH65_20460 PF04607 Region found in RelA / SpoT proteins LDH65_20460 PF13291 ACT domain LDH65_20465 PF00588 SpoU rRNA Methylase family LDH65_20465 PF12105 SpoU, rRNA methylase, C-terminal LDH65_20470 PF17191 RecG wedge domain LDH65_20470 PF00271 Helicase conserved C-terminal domain LDH65_20470 PF00270 DEAD/DEAH box helicase LDH65_20480 PF03616 Sodium/glutamate symporter LDH65_20485 PF00860 Permease family LDH65_20490 PF05170 AsmA family LDH65_20495 PF09500 Putative thioesterase (yiiD_Cterm) LDH65_20495 PF00583 Acetyltransferase (GNAT) family LDH65_20500 PF02796 Helix-turn-helix domain of resolvase LDH65_20500 PF00665 Integrase core domain LDH65_20505 PF01695 IstB-like ATP binding protein LDH65_20510 PF02580 D-Tyr-tRNA(Tyr) deacylase LDH65_20515 PF03631 Virulence factor BrkB LDH65_20520 PF13419 Haloacid dehalogenase-like hydrolase LDH65_20525 PF00009 Elongation factor Tu GTP binding domain LDH65_20525 PF03144 Elongation factor Tu domain 2 LDH65_20525 PF00679 Elongation factor G C-terminus LDH65_20530 PF03951 Glutamine synthetase, beta-Grasp domain LDH65_20530 PF00120 Glutamine synthetase, catalytic domain LDH65_20535 PF00512 His Kinase A (phospho-acceptor) domain LDH65_20535 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LDH65_20535 PF00989 PAS fold LDH65_20540 PF02954 Bacterial regulatory protein, Fis family LDH65_20540 PF00158 Sigma-54 interaction domain LDH65_20540 PF00072 Response regulator receiver domain LDH65_20545 PF04055 Radical SAM superfamily LDH65_20545 PF06969 HemN C-terminal domain LDH65_20550 PF04220 Der GTPase activator (YihI) LDH65_20555 PF01926 50S ribosome-binding GTPase LDH65_20560 PF01797 Transposase IS200 like LDH65_20565 PF01367 5'-3' exonuclease, C-terminal SAM fold LDH65_20565 PF01612 3'-5' exonuclease LDH65_20565 PF00476 DNA polymerase family A LDH65_20565 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain LDH65_20570 PF01323 DSBA-like thioredoxin domain LDH65_20575 PF01636 Phosphotransferase enzyme family LDH65_20580 PF06288 Protein of unknown function (DUF1040) LDH65_20585 PF12804 MobA-like NTP transferase domain LDH65_20590 PF03205 Molybdopterin guanine dinucleotide synthesis protein B LDH65_20595 PF00872 Transposase, Mutator family LDH65_20620 PF00392 Bacterial regulatory proteins, gntR family LDH65_20620 PF07729 FCD domain LDH65_20625 PF07690 Major Facilitator Superfamily LDH65_20640 PF00294 pfkB family carbohydrate kinase LDH65_20645 PF05025 RbsD / FucU transport protein family LDH65_20650 PF02705 K+ potassium transporter LDH65_20655 PF17868 AAA lid domain LDH65_20655 PF07728 AAA domain (dynein-related subfamily) LDH65_20655 PF12592 Protein of unknown function (DUF3763) LDH65_20660 PF05762 VWA domain containing CoxE-like protein LDH65_20665 PF03590 Aspartate-ammonia ligase LDH65_20670 PF01037 Lrp/AsnC ligand binding domain LDH65_20675 PF00258 Flavodoxin LDH65_20680 PF01134 Glucose inhibited division protein A LDH65_20680 PF13932 GidA associated domain LDH65_20685 PF02527 rRNA small subunit methyltransferase G LDH65_20690 PF03899 ATP synthase I chain LDH65_20695 PF00119 ATP synthase A chain LDH65_20700 PF00137 ATP synthase subunit C LDH65_20705 PF00430 ATP synthase B/B' CF(0) LDH65_20710 PF00213 ATP synthase delta (OSCP) subunit LDH65_20715 PF00306 ATP synthase alpha/beta chain, C terminal domain LDH65_20715 PF02874 ATP synthase alpha/beta family, beta-barrel domain LDH65_20715 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain LDH65_20720 PF00231 ATP synthase LDH65_20725 PF02874 ATP synthase alpha/beta family, beta-barrel domain LDH65_20725 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain LDH65_20730 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain LDH65_20730 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain LDH65_20735 PF12804 MobA-like NTP transferase domain LDH65_20735 PF00132 Bacterial transferase hexapeptide (six repeats) LDH65_20740 PF01380 SIS domain LDH65_20745 PF12849 PBP superfamily domain LDH65_20750 PF00528 Binding-protein-dependent transport system inner membrane component LDH65_20755 PF00528 Binding-protein-dependent transport system inner membrane component LDH65_20760 PF00005 ABC transporter LDH65_20765 PF01895 PhoU domain LDH65_20775 PF00497 Bacterial extracellular solute-binding proteins, family 3 LDH65_20780 PF00528 Binding-protein-dependent transport system inner membrane component LDH65_20785 PF00528 Binding-protein-dependent transport system inner membrane component LDH65_20790 PF13419 Haloacid dehalogenase-like hydrolase LDH65_20800 PF00860 Permease family LDH65_20825 PF12241 Trans-2-enoyl-CoA reductase catalytic region LDH65_20825 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase LDH65_20825 PF07055 Enoyl reductase FAD binding domain LDH65_20830 PF10396 GTP-binding protein TrmE N-terminus LDH65_20830 PF12631 MnmE helical domain LDH65_20830 PF01926 50S ribosome-binding GTPase LDH65_20835 PF02096 60Kd inner membrane protein LDH65_20835 PF14849 YidC periplasmic domain LDH65_20840 PF01809 Putative membrane protein insertion efficiency factor LDH65_20845 PF00825 Ribonuclease P LDH65_20850 PF00468 Ribosomal protein L34 LDH65_20890 PF05973 Phage derived protein Gp49-like (DUF891) LDH65_20900 PF01278 Omptin family LDH65_20920 PF01815 Rop protein LDH65_20925 PF01695 IstB-like ATP binding protein LDH65_20930 PF00665 Integrase core domain LDH65_20930 PF02796 Helix-turn-helix domain of resolvase LDH65_20935 PF05973 Phage derived protein Gp49-like (DUF891) LDH65_20980 PF02796 Helix-turn-helix domain of resolvase LDH65_20980 PF00239 Resolvase, N terminal domain LDH65_20985 PF13700 Domain of unknown function (DUF4158) LDH65_20985 PF01526 Tn3 transposase DDE domain LDH65_20995 PF05662 Coiled stalk of trimeric autotransporter adhesin LDH65_20995 PF05658 Head domain of trimeric autotransporter adhesin LDH65_20995 PF03895 YadA-like membrane anchor domain LDH65_21010 PF03895 YadA-like membrane anchor domain LDH65_21010 PF05662 Coiled stalk of trimeric autotransporter adhesin LDH65_21010 PF05658 Head domain of trimeric autotransporter adhesin LDH65_21050 PF02387 IncFII RepA protein family LDH65_21075 PF00069 Protein kinase domain LDH65_21075 PF09632 Rac1-binding domain LDH65_21080 PF03421 YopJ Serine/Threonine acetyltransferase LDH65_21100 PF00102 Protein-tyrosine phosphatase LDH65_21100 PF09013 YopH, N-terminal LDH65_21105 PF00872 Transposase, Mutator family LDH65_21120 PF01695 IstB-like ATP binding protein LDH65_21125 PF00665 Integrase core domain LDH65_21125 PF02796 Helix-turn-helix domain of resolvase LDH65_21135 PF09013 YopH, N-terminal LDH65_21140 PF02108 Flagellar assembly protein FliH LDH65_21145 PF06578 YOP proteins translocation protein K (YscK) LDH65_21150 PF01514 Secretory protein of YscJ/FliF family LDH65_21155 PF17001 Type III secretion basal body protein I, YscI, HrpB, PscI LDH65_21160 PF09025 YopR, type III needle-polymerisation regulator LDH65_21165 PF09477 Bacterial type II secretion system chaperone protein (type_III_yscG) LDH65_21170 PF09392 Type III secretion needle MxiH, YscF, SsaG, EprI, PscF, EscF LDH65_21175 PF08988 Type III secretion system, cytoplasmic E component of needle LDH65_21180 PF16693 Inner membrane component of T3SS, periplasmic domain LDH65_21180 PF16697 Inner membrane component of T3SS, cytoplasmic domain LDH65_21185 PF03958 Bacterial type II/III secretion system short domain LDH65_21185 PF00263 Bacterial type II and III secretion system protein LDH65_21190 PF05932 Tir chaperone protein (CesT) family LDH65_21195 PF17551 Family of unknown function (DUF5463) LDH65_21200 PF02311 AraC-like ligand binding domain LDH65_21200 PF12833 Helix-turn-helix domain LDH65_21205 PF09619 Type III secretion system lipoprotein chaperone (YscW) LDH65_21210 PF01312 FlhB HrpN YscU SpaS Family LDH65_21215 PF01311 Bacterial export proteins, family 1 LDH65_21220 PF01313 Bacterial export proteins, family 3 LDH65_21225 PF00813 FliP family LDH65_21230 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term LDH65_21235 PF02120 Flagellar hook-length control protein FliK LDH65_21240 PF07321 Type III secretion protein YscO LDH65_21245 PF02874 ATP synthase alpha/beta family, beta-barrel domain LDH65_21245 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain LDH65_21245 PF18269 T3SS EscN ATPase C-terminal domain LDH65_21250 PF07201 HrpJ-like domain LDH65_21255 PF09059 TyeA LDH65_21265 PF09474 Type III secretion system YscX (type_III_YscX) LDH65_21275 PF00771 FHIPEP family LDH65_21280 PF09621 Type III secretion system regulator (LcrR) LDH65_21285 PF07216 LcrG protein LDH65_21290 PF04792 V antigen (LcrV) protein LDH65_21295 PF07720 Tetratricopeptide repeat LDH65_21300 PF04888 Secretion system effector C (SseC) like family LDH65_21305 PF05844 YopD protein LDH65_21320 PF12468 Type III secretion system leucine rich repeat protein LDH65_21350 PF05932 Tir chaperone protein (CesT) family LDH65_21355 PF03543 Yersinia/Haemophilus virulence surface antigen LDH65_21370 PF05818 Enterobacterial TraT complement resistance protein LDH65_21375 PF05818 Enterobacterial TraT complement resistance protein LDH65_21390 PF13614 AAA domain LDH65_21395 PF02195 ParB-like nuclease domain LDH65_21395 PF18090 Centromere-binding protein HTH domain LDH65_21415 PF03693 Bacterial antitoxin of ParD toxin-antitoxin type II system and RHH LDH65_21425 PF03545 Yersinia virulence determinant (YopE) LDH65_21425 PF09020 YopE, N terminal LDH65_21430 PF05932 Tir chaperone protein (CesT) family LDH65_21440 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain LDH65_21440 PF01367 5'-3' exonuclease, C-terminal SAM fold LDH65_21450 PF00154 recA bacterial DNA recombination protein LDH65_21495 PF01051 Initiator Replication protein LDH65_21575 PF00271 Helicase conserved C-terminal domain LDH65_21575 PF17191 RecG wedge domain LDH65_21575 PF00270 DEAD/DEAH box helicase LDH65_21580 PF17762 HTH domain found in ParB protein LDH65_21580 PF02195 ParB-like nuclease domain LDH65_21585 PF17762 HTH domain found in ParB protein LDH65_21585 PF02195 ParB-like nuclease domain LDH65_21590 PF00005 ABC transporter LDH65_21590 PF00664 ABC transporter transmembrane region LDH65_21590 PF03412 Peptidase C39 family LDH65_21680 PF02796 Helix-turn-helix domain of resolvase LDH65_21680 PF00665 Integrase core domain LDH65_21685 PF02195 ParB-like nuclease domain LDH65_21690 PF06006 Bacterial protein of unknown function (DUF905) LDH65_21705 PF07128 Protein of unknown function (DUF1380) LDH65_21715 PF01555 DNA methylase LDH65_21735 PF02195 ParB-like nuclease domain LDH65_21735 PF08775 ParB family LDH65_21740 PF18607 ParA helix turn helix domain LDH65_21740 PF13614 AAA domain LDH65_21755 PF02796 Helix-turn-helix domain of resolvase LDH65_21755 PF00239 Resolvase, N terminal domain LDH65_21760 PF04754 Putative transposase, YhgA-like LDH65_21770 PF13091 PLD-like domain LDH65_21795 PF02371 Transposase IS116/IS110/IS902 family LDH65_21795 PF01548 Transposase LDH65_21805 PF00872 Transposase, Mutator family LDH65_21810 PF06445 GyrI-like small molecule binding domain LDH65_21810 PF12833 Helix-turn-helix domain LDH65_21815 PF02753 Pili assembly chaperone PapD, C-terminal domain LDH65_21815 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain LDH65_21820 PF13953 PapC C-terminal domain LDH65_21820 PF13954 PapC N-terminal domain LDH65_21820 PF00577 Outer membrane usher protein LDH65_21825 PF09255 Caf1 Capsule antigen LDH65_21845 PF06213 Cobalamin biosynthesis protein CobT LDH65_21845 PF11775 Cobalamin biosynthesis protein CobT VWA domain LDH65_21855 PF07733 Bacterial DNA polymerase III alpha NTPase domain LDH65_21855 PF17657 Bacterial DNA polymerase III alpha subunit finger domain LDH65_21855 PF14579 Helix-hairpin-helix motif LDH65_21855 PF02811 PHP domain