locus-tag class description M478_1 PF02894 Oxidoreductase family, C-terminal alpha/beta domain M478_1 PF01408 Oxidoreductase family, NAD-binding Rossmann fold M478_100 PF06411 HdeA/HdeB family M478_1000 PF07023 Protein of unknown function (DUF1315) M478_1001 PF01641 SelR domain M478_1002 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain M478_1002 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain M478_1003 PF01263 Aldose 1-epimerase M478_1004 PF06629 MltA-interacting protein MipA M478_1005 PF08298 PrkA AAA domain M478_1005 PF06798 PrkA serine protein kinase C-terminal domain M478_1006 PF04285 Protein of unknown function (DUF444) M478_1008 PF03466 LysR substrate binding domain M478_1008 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M478_1009 PF05726 Pirin C-terminal cupin domain M478_1009 PF02678 Pirin M478_101 PF07885 Ion channel M478_101 PF02254 TrkA-N domain M478_1010 PF07690 Major Facilitator Superfamily M478_1011 PF01266 FAD dependent oxidoreductase M478_1012 PF04293 SpoVR like protein M478_1013 PF07840 FadR C-terminal domain M478_1013 PF00392 Bacterial regulatory proteins, gntR family M478_1014 PF06450 Bacterial Na+/H+ antiporter B (NhaB) M478_1015 PF02600 Disulfide bond formation protein DsbB M478_1018 PF00266 Aminotransferase class-V M478_102 PF02537 CrcB-like protein, Camphor Resistance (CrcB) M478_1020 PF00872 Transposase, Mutator family M478_1021 PF00872 Transposase, Mutator family M478_1022 PF02413 Caudovirales tail fibre assembly protein, lambda gpK M478_103 PF02537 CrcB-like protein, Camphor Resistance (CrcB) M478_104 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit M478_105 PF02378 Phosphotransferase system, EIIC M478_1052 PF00872 Transposase, Mutator family M478_106 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit M478_1065 PF06530 Phage antitermination protein Q M478_1067 PF05772 NinB protein M478_107 PF12833 Helix-turn-helix domain M478_107 PF07883 Cupin domain M478_1070 PF01695 IstB-like ATP binding protein M478_1071 PF00665 Integrase core domain M478_1071 PF02796 Helix-turn-helix domain of resolvase M478_1072 PF00589 Phage integrase family M478_1072 PF12167 Arm DNA-binding domain M478_1073 PF03692 Putative zinc- or iron-chelating domain M478_1074 PF01557 Fumarylacetoacetate (FAA) hydrolase family M478_1075 PF13406 Transglycosylase SLT domain M478_1076 PF05166 YcgL domain M478_1077 PF03775 Septum formation inhibitor MinC, C-terminal domain M478_1077 PF05209 Septum formation inhibitor MinC, N-terminal domain M478_1078 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain M478_1079 PF03776 Septum formation topological specificity factor MinE M478_108 PF04794 YdjC-like protein M478_1080 PF01612 3'-5' exonuclease M478_1080 PF00570 HRDC domain M478_1081 PF13193 AMP-binding enzyme C-terminal domain M478_1081 PF00501 AMP-binding enzyme M478_1082 PF03843 Outer membrane lipoprotein Slp family M478_1083 PF00814 Glycoprotease family M478_1084 PF13307 Helicase C-terminal domain M478_1084 PF04851 Type III restriction enzyme, res subunit M478_1085 PF01042 Endoribonuclease L-PSP M478_1086 PF00893 Small Multidrug Resistance protein M478_1087 PF00893 Small Multidrug Resistance protein M478_1088 PF01081 KDPG and KHG aldolase M478_1090 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain M478_1090 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain M478_1091 PF01380 SIS domain M478_1091 PF01418 Helix-turn-helix domain, rpiR family M478_1092 PF02887 Pyruvate kinase, alpha/beta domain M478_1092 PF00224 Pyruvate kinase, barrel domain M478_1093 PF03279 Bacterial lipid A biosynthesis acyltransferase M478_1094 PF01476 LysM domain M478_1094 PF08525 Opacity-associated protein A N-terminal motif M478_1094 PF01551 Peptidase family M23 M478_1095 PF01297 Zinc-uptake complex component A periplasmic M478_1096 PF00005 ABC transporter M478_1097 PF00950 ABC 3 transport family M478_1098 PF05496 Holliday junction DNA helicase RuvB P-loop domain M478_1098 PF05491 RuvB C-terminal winged helix domain M478_1098 PF17864 RuvB AAA lid domain M478_1099 PF01330 RuvA N terminal domain M478_1099 PF07499 RuvA, C-terminal domain M478_11 PF00664 ABC transporter transmembrane region M478_11 PF00005 ABC transporter M478_1100 PF02075 Crossover junction endodeoxyribonuclease RuvC M478_1101 PF01709 Transcriptional regulator M478_1102 PF00293 NUDIX domain M478_1103 PF00152 tRNA synthetases class II (D, K and N) M478_1103 PF01336 OB-fold nucleic acid binding domain M478_1103 PF02938 GAD domain M478_1104 PF01904 Protein of unknown function DUF72 M478_1105 PF01124 MAPEG family M478_1106 PF13649 Methyltransferase domain M478_1107 PF08003 Protein of unknown function (DUF1698) M478_1108 PF03932 CutC family M478_1109 PF06185 YecM protein M478_111 PF17206 SeqA protein N-terminal domain M478_111 PF03925 SeqA protein C-terminal domain M478_1110 PF00750 tRNA synthetases class I (R) M478_1110 PF05746 DALR anticodon binding domain M478_1110 PF03485 Arginyl tRNA synthetase N terminal domain M478_1111 PF13332 Hemagglutinin repeat M478_1111 PF05860 haemagglutination activity domain M478_1112 PF08479 POTRA domain, ShlB-type M478_1112 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB M478_1112 PF17287 POTRA domain M478_1113 PF03023 Lipid II flippase MurJ M478_1114 PF01408 Oxidoreductase family, NAD-binding Rossmann fold M478_1115 PF13302 Acetyltransferase (GNAT) domain M478_1116 PF07690 Major Facilitator Superfamily M478_1117 PF07273 Protein of unknown function (DUF1439) M478_1118 PF02613 Nitrate reductase delta subunit M478_1119 PF02811 PHP domain M478_112 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain M478_112 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I M478_112 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II M478_112 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III M478_1121 PF00480 ROK family M478_1121 PF01325 Iron dependent repressor, N-terminal DNA binding domain M478_1122 PF03009 Glycerophosphoryl diester phosphodiesterase family M478_1123 PF00005 ABC transporter M478_1123 PF08402 TOBE domain M478_1124 PF01797 Transposase IS200 like M478_1125 PF00005 ABC transporter M478_1125 PF08402 TOBE domain M478_1126 PF00528 Binding-protein-dependent transport system inner membrane component M478_1127 PF00528 Binding-protein-dependent transport system inner membrane component M478_1129 PF03009 Glycerophosphoryl diester phosphodiesterase family M478_1132 PF01740 STAS domain M478_1132 PF00916 Sulfate permease family M478_1133 PF00793 DAHP synthetase I family M478_1134 PF13369 Transglutaminase-like superfamily M478_1135 PF04247 Invasion gene expression up-regulator, SirB M478_1136 PF13847 Methyltransferase domain M478_1136 PF17827 PrmC N-terminal domain M478_1137 PF03462 PCRF domain M478_1137 PF00472 RF-1 domain M478_1138 PF01488 Shikimate / quinate 5-dehydrogenase M478_1138 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain M478_1138 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain M478_1139 PF03550 Outer membrane lipoprotein LolB M478_1140 PF08544 GHMP kinases C terminal M478_1140 PF00288 GHMP kinases N terminal domain M478_1141 PF14572 Phosphoribosyl synthetase-associated domain M478_1141 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase M478_1142 PF10762 Protein of unknown function (DUF2583) M478_1143 PF01195 Peptidyl-tRNA hydrolase M478_1144 PF01926 50S ribosome-binding GTPase M478_1144 PF06071 Protein of unknown function (DUF933) M478_1153 PF02129 X-Pro dipeptidyl-peptidase (S15 family) M478_1154 PF00072 Response regulator receiver domain M478_1154 PF00486 Transcriptional regulatory protein, C terminal M478_1155 PF00672 HAMP domain M478_1155 PF00512 His Kinase A (phospho-acceptor) domain M478_1155 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M478_116 PF00072 Response regulator receiver domain M478_116 PF00486 Transcriptional regulatory protein, C terminal M478_1164 PF08242 Methyltransferase domain M478_1169 PF00872 Transposase, Mutator family M478_117 PF13493 Domain of unknown function (DUF4118) M478_117 PF02702 Osmosensitive K+ channel His kinase sensor domain M478_117 PF00512 His Kinase A (phospho-acceptor) domain M478_117 PF13492 GAF domain M478_117 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M478_1178 PF01370 NAD dependent epimerase/dehydratase family M478_1179 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal M478_1179 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III M478_118 PF02669 K+-transporting ATPase, c chain M478_1180 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal M478_1180 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III M478_1182 PF05962 HutD M478_1183 PF01979 Amidohydrolase family M478_1184 PF07702 UTRA domain M478_1184 PF00392 Bacterial regulatory proteins, gntR family M478_1185 PF01979 Amidohydrolase family M478_1187 PF01695 IstB-like ATP binding protein M478_1189 PF02796 Helix-turn-helix domain of resolvase M478_1189 PF00665 Integrase core domain M478_1192 PF00005 ABC transporter M478_1192 PF08402 TOBE domain M478_1193 PF00528 Binding-protein-dependent transport system inner membrane component M478_1194 PF00528 Binding-protein-dependent transport system inner membrane component M478_1196 PF02894 Oxidoreductase family, C-terminal alpha/beta domain M478_1196 PF01408 Oxidoreductase family, NAD-binding Rossmann fold M478_120 PF03814 Potassium-transporting ATPase A subunit M478_1203 PF00872 Transposase, Mutator family M478_1204 PF00872 Transposase, Mutator family M478_121 PF10725 Protein of unknown function (DUF2517) M478_1216 PF05638 Type VI secretion system effector, Hcp M478_122 PF08349 Protein of unknown function (DUF1722) M478_1225 PF01066 CDP-alcohol phosphatidyltransferase M478_1226 PF02151 UvrB/uvrC motif M478_1226 PF01541 GIY-YIG catalytic domain M478_1226 PF08459 UvrC Helix-hairpin-helix N-terminal M478_1227 PF00196 Bacterial regulatory proteins, luxR family M478_1227 PF00072 Response regulator receiver domain M478_1228 PF10769 Protein of unknown function (DUF2594) M478_1229 PF06942 GlpM protein M478_123 PF00875 DNA photolyase M478_123 PF03441 FAD binding domain of DNA photolyase M478_1231 PF13505 Outer membrane protein beta-barrel domain M478_1233 PF00324 Amino acid permease M478_1234 PF01344 Kelch motif M478_1235 PF03358 NADPH-dependent FMN reductase M478_1236 PF04261 Dyp-type peroxidase family M478_1237 PF09375 Imelysin M478_1237 PF13473 Cupredoxin-like domain M478_1238 PF03239 Iron permease FTR1 family M478_1239 PF00474 Sodium:solute symporter family M478_124 PF02112 cAMP phosphodiesterases class-II M478_1241 PF18327 Proline utilization A proline dehydrogenase N-terminal domain M478_1241 PF01619 Proline dehydrogenase M478_1241 PF14850 DNA-binding domain of Proline dehydrogenase M478_1241 PF00171 Aldehyde dehydrogenase family M478_1247 PF00291 Pyridoxal-phosphate dependent enzyme M478_1248 PF02899 Phage integrase, N-terminal SAM-like domain M478_1249 PF04542 Sigma-70 region 2 M478_1249 PF04539 Sigma-70 region 3 M478_1249 PF04545 Sigma-70, region 4 M478_125 PF01784 NIF3 (NGG1p interacting factor 3) M478_1250 PF00700 Bacterial flagellin C-terminal helical region M478_1250 PF00669 Bacterial flagellin N-terminal helical region M478_1250 PF08884 Flagellin D3 domain M478_1251 PF02465 Flagellar hook-associated protein 2 N-terminus M478_1251 PF07195 Flagellar hook-associated protein 2 C-terminus M478_1251 PF07196 Flagellin hook IN motif M478_1252 PF02561 Flagellar protein FliS M478_1253 PF05400 Flagellar protein FliT M478_1254 PF12833 Helix-turn-helix domain M478_1255 PF02743 Cache domain M478_1255 PF00211 Adenylate and Guanylate cyclase catalytic domain M478_1255 PF00672 HAMP domain M478_1256 PF01966 HD domain M478_1257 PF00730 HhH-GPD superfamily base excision DNA repair protein M478_1260 PF02049 Flagellar hook-basal body complex protein FliE M478_1261 PF01514 Secretory protein of YscJ/FliF family M478_1261 PF08345 Flagellar M-ring protein C-terminal M478_1262 PF14842 FliG N-terminal domain M478_1262 PF01706 FliG C-terminal domain M478_1262 PF14841 FliG middle domain M478_1263 PF02108 Flagellar assembly protein FliH M478_1264 PF18269 T3SS EscN ATPase C-terminal domain M478_1264 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain M478_1265 PF02050 Flagellar FliJ protein M478_1266 PF02120 Flagellar hook-length control protein FliK M478_1267 PF03748 Flagellar basal body-associated protein FliL M478_1268 PF02154 Flagellar motor switch protein FliM M478_1268 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term M478_1269 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term M478_1269 PF16973 Flagellar motor switch protein FliN N-terminal M478_127 PF02682 Carboxyltransferase domain, subdomain C and D M478_1270 PF04347 Flagellar biosynthesis protein, FliO M478_1271 PF00813 FliP family M478_1272 PF01313 Bacterial export proteins, family 3 M478_1273 PF01311 Bacterial export proteins, family 1 M478_1276 PF00294 pfkB family carbohydrate kinase M478_1277 PF02653 Branched-chain amino acid transport system / permease component M478_1278 PF00005 ABC transporter M478_1279 PF13407 Periplasmic binding protein domain M478_128 PF02626 Carboxyltransferase domain, subdomain A and B M478_1280 PF02653 Branched-chain amino acid transport system / permease component M478_1281 PF00596 Class II Aldolase and Adducin N-terminal domain M478_1282 PF04198 Putative sugar-binding domain M478_1283 PF00669 Bacterial flagellin N-terminal helical region M478_1284 PF00460 Flagella basal body rod protein M478_1284 PF06429 Flagellar basal body rod FlgEFG protein C-terminal M478_1285 PF10135 Rod binding protein M478_1285 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase M478_1286 PF02119 Flagellar P-ring protein M478_1287 PF02107 Flagellar L-ring protein M478_1288 PF06429 Flagellar basal body rod FlgEFG protein C-terminal M478_1288 PF00460 Flagella basal body rod protein M478_1289 PF06429 Flagellar basal body rod FlgEFG protein C-terminal M478_1289 PF00460 Flagella basal body rod protein M478_129 PF03746 LamB/YcsF family M478_1290 PF00460 Flagella basal body rod protein M478_1290 PF06429 Flagellar basal body rod FlgEFG protein C-terminal M478_1290 PF07559 Flagellar basal body protein FlaE M478_1291 PF13860 FlgD Ig-like domain M478_1291 PF03963 Flagellar hook capping protein - N-terminal region M478_1291 PF13861 FlgD Tudor-like domain M478_1292 PF06429 Flagellar basal body rod FlgEFG protein C-terminal M478_1292 PF00460 Flagella basal body rod protein M478_1293 PF00460 Flagella basal body rod protein M478_1294 PF17656 FlgA N-terminal domain M478_1294 PF13144 Chaperone for flagella basal body P-ring formation M478_1295 PF04316 Anti-sigma-28 factor, FlgM M478_1296 PF05130 FlgN protein M478_1297 PF09134 Invasin, domain 3 M478_1297 PF07979 Intimin C-type lectin domain M478_1297 PF02369 Bacterial Ig-like domain (group 1) M478_1297 PF11924 Inverse autotransporter, beta-domain M478_1298 PF01797 Transposase IS200 like M478_1299 PF02369 Bacterial Ig-like domain (group 1) M478_1299 PF11924 Inverse autotransporter, beta-domain M478_1299 PF09134 Invasin, domain 3 M478_1299 PF07979 Intimin C-type lectin domain M478_1300 PF06366 Flagellar protein FlhE M478_1301 PF00771 FHIPEP family M478_1302 PF01312 FlhB HrpN YscU SpaS Family M478_1305 PF10709 Protein of unknown function (DUF2511) M478_1307 PF04234 CopC domain M478_1308 PF00210 Ferritin-like domain M478_1309 PF06440 DNA polymerase III, theta subunit M478_1310 PF00561 alpha/beta hydrolase fold M478_1311 PF00326 Prolyl oligopeptidase family M478_1311 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain M478_1312 PF13995 YebF-like protein M478_1314 PF07130 YebG protein M478_1315 PF03880 DbpA RNA binding domain M478_1315 PF00271 Helicase conserved C-terminal domain M478_1315 PF00270 DEAD/DEAH box helicase M478_1316 PF02222 ATP-grasp domain M478_1317 PF03701 Uncharacterised protein family (UPF0181) M478_1318 PF00425 chorismate binding enzyme M478_1318 PF04715 Anthranilate synthase component I, N terminal region M478_1319 PF00293 NUDIX domain M478_1320 PF03313 Serine dehydratase alpha chain M478_1320 PF03315 Serine dehydratase beta chain M478_1321 PF01613 Flavin reductase like domain M478_1322 PF11794 4-hydroxyphenylacetate 3-hydroxylase N terminal M478_1322 PF03241 4-hydroxyphenylacetate 3-hydroxylase C terminal M478_1323 PF07690 Major Facilitator Superfamily M478_1324 PF03328 HpcH/HpaI aldolase/citrate lyase family M478_1325 PF01557 Fumarylacetoacetate (FAA) hydrolase family M478_1326 PF02962 5-carboxymethyl-2-hydroxymuconate isomerase M478_1327 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase M478_1328 PF00171 Aldehyde dehydrogenase family M478_1329 PF01557 Fumarylacetoacetate (FAA) hydrolase family M478_133 PF01470 Pyroglutamyl peptidase M478_1330 PF01557 Fumarylacetoacetate (FAA) hydrolase family M478_1331 PF01047 MarR family M478_1334 PF03830 PTS system sorbose subfamily IIB component M478_1334 PF03610 PTS system fructose IIA component M478_1335 PF03609 PTS system sorbose-specific iic component M478_1336 PF03613 PTS system mannose/fructose/sorbose family IID component M478_1337 PF06173 Protein of unknown function (DUF986) M478_1338 PF02659 Putative manganese efflux pump M478_1339 PF00593 TonB dependent receptor M478_1339 PF07715 TonB-dependent Receptor Plug Domain M478_134 PF03167 Uracil DNA glycosylase superfamily M478_1341 PF08447 PAS fold M478_1341 PF05231 MASE1 M478_1341 PF08448 PAS fold M478_1341 PF00990 Diguanylate cyclase, GGDEF domain M478_1341 PF13426 PAS domain M478_1341 PF00563 EAL domain M478_1343 PF13847 Methyltransferase domain M478_1345 PF00313 'Cold-shock' DNA-binding domain M478_1347 PF07017 Antimicrobial peptide resistance and lipid A acylation protein PagP M478_1348 PF00324 Amino acid permease M478_135 PF01228 Glycine radical M478_1351 PF13974 YebO-like protein M478_1352 PF13996 YobH-like protein M478_1353 PF10964 Protein of unknown function (DUF2766) M478_1355 PF12833 Helix-turn-helix domain M478_1357 PF00005 ABC transporter M478_1357 PF00664 ABC transporter transmembrane region M478_1360 PF06167 Glucose-regulated metallo-peptidase M90 M478_1362 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family M478_1362 PF00356 Bacterial regulatory proteins, lacI family M478_1363 PF01695 IstB-like ATP binding protein M478_1365 PF00665 Integrase core domain M478_1365 PF02796 Helix-turn-helix domain of resolvase M478_1366 PF00356 Bacterial regulatory proteins, lacI family M478_1366 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family M478_1367 PF00872 Transposase, Mutator family M478_1368 PF01306 LacY proton/sugar symporter M478_1369 PF16874 Glycosyl hydrolase family 36 C-terminal domain M478_1369 PF16875 Glycosyl hydrolase family 36 N-terminal domain M478_1372 PF17837 4'-phosphopantetheinyl transferase N-terminal domain M478_1372 PF01648 4'-phosphopantetheinyl transferase superfamily M478_1373 PF03480 Bacterial extracellular solute-binding protein, family 7 M478_1375 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component M478_1376 PF00072 Response regulator receiver domain M478_1376 PF00196 Bacterial regulatory proteins, luxR family M478_1378 PF09831 Uncharacterized protein conserved in bacteria (DUF2058) M478_138 PF12796 Ankyrin repeats (3 copies) M478_1380 PF01522 Polysaccharide deacetylase M478_1382 PF01554 MatE M478_1383 PF00764 Arginosuccinate synthase M478_1384 PF01070 FMN-dependent dehydrogenase M478_1386 PF13378 Enolase C-terminal domain-like M478_1386 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain M478_1387 PF01557 Fumarylacetoacetate (FAA) hydrolase family M478_1389 PF04134 Protein of unknown function, DUF393 M478_1390 PF07690 Major Facilitator Superfamily M478_1391 PF00872 Transposase, Mutator family M478_1392 PF11924 Inverse autotransporter, beta-domain M478_1392 PF09134 Invasin, domain 3 M478_1392 PF02369 Bacterial Ig-like domain (group 1) M478_1393 PF04363 Protein of unknown function (DUF496) M478_1395 PF08411 Exonuclease C-terminal M478_1395 PF00929 Exonuclease M478_1396 PF13520 Amino acid permease M478_1398 PF00465 Iron-containing alcohol dehydrogenase M478_1399 PF00005 ABC transporter M478_140 PF00271 Helicase conserved C-terminal domain M478_140 PF00270 DEAD/DEAH box helicase M478_1400 PF00005 ABC transporter M478_1401 PF02653 Branched-chain amino acid transport system / permease component M478_1403 PF01370 NAD dependent epimerase/dehydratase family M478_1404 PF08029 HisG, C-terminal domain M478_1404 PF01634 ATP phosphoribosyltransferase M478_1405 PF00815 Histidinol dehydrogenase M478_1406 PF00155 Aminotransferase class I and II M478_1407 PF00475 Imidazoleglycerol-phosphate dehydratase M478_1408 PF00117 Glutamine amidotransferase class-I M478_1409 PF00977 Histidine biosynthesis protein M478_141 PF05175 Methyltransferase small domain M478_1410 PF00977 Histidine biosynthesis protein M478_1411 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase M478_1411 PF01502 Phosphoribosyl-AMP cyclohydrolase M478_1412 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain M478_1412 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase M478_1413 PF00483 Nucleotidyl transferase M478_1414 PF00483 Nucleotidyl transferase M478_1417 PF00593 TonB dependent receptor M478_1417 PF07660 Secretin and TonB N terminus short domain M478_1417 PF07715 TonB-dependent Receptor Plug Domain M478_1418 PF01497 Periplasmic binding protein M478_1419 PF01032 FecCD transport family M478_142 PF02910 Fumarate reductase flavoprotein C-term M478_142 PF00890 FAD binding domain M478_1420 PF01032 FecCD transport family M478_1421 PF00005 ABC transporter M478_1422 PF04183 IucA / IucC family M478_1422 PF06276 Ferric iron reductase FhuF-like transporter M478_1424 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) M478_1425 PF00282 Pyridoxal-dependent decarboxylase conserved domain M478_1426 PF06276 Ferric iron reductase FhuF-like transporter M478_1426 PF11575 FhuF 2Fe-2S C-terminal domain M478_1427 PF00571 CBS domain M478_1427 PF03471 Transporter associated domain M478_1427 PF03741 Integral membrane protein TerC family M478_1428 PF05170 AsmA family M478_1429 PF00692 dUTPase M478_143 PF04542 Sigma-70 region 2 M478_143 PF08281 Sigma-70, region 4 M478_1430 PF00485 Phosphoribulokinase / Uridine kinase family M478_1431 PF10609 NUBPL iron-transfer P-loop NTPase M478_1432 PF01588 Putative tRNA binding domain M478_1432 PF09334 tRNA synthetases class I (M) M478_1433 PF01797 Transposase IS200 like M478_1437 PF07690 Major Facilitator Superfamily M478_1438 PF03788 LrgA family M478_1439 PF04172 LrgB-like family M478_144 PF03872 Anti sigma-E protein RseA, N-terminal domain M478_144 PF03873 Anti sigma-E protein RseA, C-terminal domain M478_1440 PF08211 Cytidine and deoxycytidylate deaminase zinc-binding region M478_1440 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region M478_1441 PF00390 Malic enzyme, N-terminal domain M478_1441 PF03949 Malic enzyme, NAD binding domain M478_1442 PF02698 DUF218 domain M478_1443 PF02653 Branched-chain amino acid transport system / permease component M478_1444 PF00005 ABC transporter M478_1445 PF13407 Periplasmic binding protein domain M478_1446 PF04235 Protein of unknown function (DUF418) M478_1447 PF01227 GTP cyclohydrolase I M478_1448 PF06779 Uncharacterised MFS-type transporter YbfB M478_1449 PF03466 LysR substrate binding domain M478_1449 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M478_145 PF03888 MucB/RseB N-terminal domain M478_145 PF17188 MucB/RseB C-terminal domain M478_1450 PF08240 Alcohol dehydrogenase GroES-like domain M478_1450 PF00107 Zinc-binding dehydrogenase M478_1451 PF00756 Putative esterase M478_1454 PF13533 Biotin-lipoyl like M478_1455 PF00005 ABC transporter M478_1457 PF00994 Probable molybdopterin binding domain M478_1457 PF03453 MoeA N-terminal region (domain I and II) M478_1457 PF03454 MoeA C-terminal region (domain IV) M478_1458 PF00899 ThiF family M478_1459 PF00872 Transposase, Mutator family M478_1461 PF12848 ABC transporter M478_1461 PF00005 ABC transporter M478_148 PF00679 Elongation factor G C-terminus M478_148 PF06421 GTP-binding protein LepA C-terminus M478_148 PF00009 Elongation factor Tu GTP binding domain M478_148 PF03144 Elongation factor Tu domain 2 M478_1481 PF00004 ATPase family associated with various cellular activities (AAA) M478_1481 PF07724 AAA domain (Cdc48 subfamily) M478_1481 PF17871 AAA lid domain M478_1481 PF10431 C-terminal, D2-small domain, of ClpB protein M478_1483 PF05736 OprF membrane domain M478_1483 PF00691 OmpA family M478_1489 PF00698 Acyl transferase domain M478_149 PF10502 Signal peptidase, peptidase S26 M478_1490 PF00550 Phosphopantetheine attachment site M478_1493 PF00378 Enoyl-CoA hydratase/isomerase M478_1495 PF08540 Hydroxymethylglutaryl-coenzyme A synthase C terminal M478_1495 PF01154 Hydroxymethylglutaryl-coenzyme A synthase N terminal M478_1497 PF00109 Beta-ketoacyl synthase, N-terminal domain M478_1497 PF02801 Beta-ketoacyl synthase, C-terminal domain M478_1498 PF07977 FabA-like domain M478_150 PF14622 Ribonuclease-III-like M478_150 PF00035 Double-stranded RNA binding motif M478_1501 PF08031 Berberine and berberine like M478_1501 PF01565 FAD binding domain M478_1505 PF13610 DDE domain M478_1507 PF04358 DsrC like protein M478_1508 PF00708 Acylphosphatase M478_1509 PF17785 PUA-like domain M478_1509 PF10672 S-adenosylmethionine-dependent methyltransferase M478_151 PF01926 50S ribosome-binding GTPase M478_151 PF07650 KH domain M478_1510 PF08755 Hemimethylated DNA-binding protein YccV like M478_1511 PF13380 CoA binding domain M478_1512 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) M478_1513 PF02142 MGS-like domain M478_1514 PF12462 DNA helicase IV / RNA helicase N terminal M478_1514 PF00580 UvrD/REP helicase N-terminal domain M478_1514 PF13361 UvrD-like helicase C-terminal domain M478_1515 PF03733 Inner membrane component domain M478_1516 PF12805 FUSC-like inner membrane protein yccS M478_1517 PF04993 TfoX N-terminal domain M478_1517 PF04994 TfoX C-terminal domain M478_1518 PF03846 Cell division inhibitor SulA M478_1519 PF01389 OmpA-like transmembrane domain M478_1519 PF00691 OmpA family M478_152 PF02565 Recombination protein O C terminal M478_152 PF11967 Recombination protein O N terminal M478_1520 PF01797 Transposase IS200 like M478_1521 PF06303 MatP N-terminal domain M478_1521 PF17414 MatP C-terminal ribbon-helix-helix domain M478_1522 PF13654 AAA domain M478_1522 PF05362 Lon protease (S16) C-terminal proteolytic domain M478_1523 PF07977 FabA-like domain M478_1525 PF02801 Beta-ketoacyl synthase, C-terminal domain M478_1525 PF00109 Beta-ketoacyl synthase, N-terminal domain M478_1526 PF02796 Helix-turn-helix domain of resolvase M478_1526 PF00665 Integrase core domain M478_1527 PF01695 IstB-like ATP binding protein M478_1528 PF00109 Beta-ketoacyl synthase, N-terminal domain M478_1528 PF02801 Beta-ketoacyl synthase, C-terminal domain M478_1529 PF01797 Transposase IS200 like M478_153 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ M478_1530 PF03886 ABC-type transport auxiliary lipoprotein component M478_1531 PF02470 MlaD protein M478_1532 PF04403 Paraquat-inducible protein A M478_1533 PF12848 ABC transporter M478_1533 PF00005 ABC transporter M478_1533 PF16326 ABC transporter C-terminal domain M478_1534 PF10672 S-adenosylmethionine-dependent methyltransferase M478_1534 PF02926 THUMP domain M478_1534 PF01170 Putative RNA methylase family UPF0020 M478_1535 PF03473 MOSC domain M478_1535 PF03476 MOSC N-terminal beta barrel domain M478_1535 PF00111 2Fe-2S iron-sulfur cluster binding domain M478_1536 PF07126 Cell-division protein ZapC M478_1537 PF01180 Dihydroorotate dehydrogenase M478_1538 PF11940 Domain of unknown function (DUF3458) Ig-like fold M478_1538 PF17432 Domain of unknown function (DUF3458_C) ARM repeats M478_1538 PF01433 Peptidase family M1 domain M478_1539 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain M478_1539 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family M478_154 PF01648 4'-phosphopantetheinyl transferase superfamily M478_1540 PF00152 tRNA synthetases class II (D, K and N) M478_1540 PF01336 OB-fold nucleic acid binding domain M478_1541 PF00267 Gram-negative porin M478_1542 PF00155 Aminotransferase class I and II M478_1543 PF00753 Metallo-beta-lactamase superfamily M478_1544 PF05951 Bacterial protein of unknown function (DUF882) M478_1545 PF01471 Putative peptidoglycan binding domain M478_1545 PF03734 L,D-transpeptidase catalytic domain M478_1546 PF01797 Transposase IS200 like M478_1547 PF16330 MukB hinge domain M478_1547 PF04310 MukB N-terminal M478_1548 PF04288 MukE-like family M478_1549 PF03882 MukF winged-helix domain M478_1549 PF17193 MukF C-terminal domain M478_1549 PF17192 MukF middle domain M478_155 PF01797 Transposase IS200 like M478_1551 PF01636 Phosphotransferase enzyme family M478_1552 PF02348 Cytidylyltransferase M478_1553 PF03966 Trm112p-like protein M478_1554 PF00313 'Cold-shock' DNA-binding domain M478_1555 PF07063 Domain of unknown function (DUF1338) M478_1556 PF02606 Tetraacyldisaccharide-1-P 4'-kinase M478_1557 PF00664 ABC transporter transmembrane region M478_1557 PF00005 ABC transporter M478_1558 PF03772 Competence protein M478_1558 PF00753 Metallo-beta-lactamase superfamily M478_1559 PF00216 Bacterial DNA-binding protein M478_156 PF12838 4Fe-4S dicluster domain M478_1561 PF00575 S1 RNA binding domain M478_1562 PF02224 Cytidylate kinase M478_1563 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) M478_1564 PF00266 Aminotransferase class-V M478_1566 PF05662 Coiled stalk of trimeric autotransporter adhesin M478_1566 PF05662 Coiled stalk of trimeric autotransporter adhesin M478_1566 PF03895 YadA-like membrane anchor domain M478_1566 PF05658 Head domain of trimeric autotransporter adhesin M478_1566 PF13018 Extended Signal Peptide of Type V secretion system M478_1566 PF05658 Head domain of trimeric autotransporter adhesin M478_1566 PF03895 YadA-like membrane anchor domain M478_1566 PF13018 Extended Signal Peptide of Type V secretion system M478_1567 PF00710 Asparaginase, N-terminal M478_1567 PF17763 Glutaminase/Asparaginase C-terminal domain M478_1568 PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding M478_1568 PF18381 YcaO cyclodehydratase C-terminal domain M478_1569 PF01226 Formate/nitrite transporter M478_157 PF01418 Helix-turn-helix domain, rpiR family M478_157 PF01380 SIS domain M478_1570 PF01228 Glycine radical M478_1570 PF02901 Pyruvate formate lyase-like M478_1572 PF04055 Radical SAM superfamily M478_1573 PF07690 Major Facilitator Superfamily M478_1574 PF02796 Helix-turn-helix domain of resolvase M478_1574 PF00665 Integrase core domain M478_1575 PF01695 IstB-like ATP binding protein M478_1576 PF07690 Major Facilitator Superfamily M478_1577 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) M478_1577 PF02403 Seryl-tRNA synthetase N-terminal domain M478_1578 PF00004 ATPase family associated with various cellular activities (AAA) M478_1578 PF16193 AAA C-terminal domain M478_1578 PF12002 MgsA AAA+ ATPase C terminal M478_158 PF01380 SIS domain M478_1580 PF03548 Outer membrane lipoprotein carrier protein LolA M478_1581 PF13491 4TM region of DNA translocase FtsK/SpoIIIE M478_1581 PF01580 FtsK/SpoIIIE family M478_1581 PF09397 Ftsk gamma domain M478_1581 PF17854 FtsK alpha domain M478_1582 PF01037 Lrp/AsnC ligand binding domain M478_1583 PF07992 Pyridine nucleotide-disulphide oxidoreductase M478_1584 PF00005 ABC transporter M478_1584 PF00664 ABC transporter transmembrane region M478_1585 PF00005 ABC transporter M478_1585 PF00664 ABC transporter transmembrane region M478_1586 PF03588 Leucyl/phenylalanyl-tRNA protein transferase M478_1587 PF01176 Translation initiation factor 1A / IF-1 M478_1588 PF01797 Transposase IS200 like M478_1589 PF07724 AAA domain (Cdc48 subfamily) M478_1589 PF17871 AAA lid domain M478_1589 PF02861 Clp amino terminal domain, pathogenicity island component M478_1589 PF10431 C-terminal, D2-small domain, of ClpB protein M478_1589 PF00004 ATPase family associated with various cellular activities (AAA) M478_1590 PF02617 ATP-dependent Clp protease adaptor protein ClpS M478_1591 PF00313 'Cold-shock' DNA-binding domain M478_1592 PF00005 ABC transporter M478_1592 PF12704 MacB-like periplasmic core domain M478_1592 PF02687 FtsX-like permease family M478_1593 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion M478_1594 PF04393 Protein of unknown function (DUF535) M478_1595 PF11398 Protein of unknown function (DUF2813) M478_1596 PF03956 Lysine exporter LysO M478_1597 PF03063 Prismane/CO dehydrogenase family M478_1598 PF00970 Oxidoreductase FAD-binding domain M478_1598 PF00111 2Fe-2S iron-sulfur cluster binding domain M478_1598 PF00175 Oxidoreductase NAD-binding domain M478_1599 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain M478_1599 PF00205 Thiamine pyrophosphate enzyme, central domain M478_1599 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain M478_16 PF00196 Bacterial regulatory proteins, luxR family M478_160 PF14437 MafB19-like deaminase M478_1600 PF01212 Beta-eliminating lyase M478_1601 PF11066 Protein of unknown function (DUF2867) M478_1601 PF13460 NAD(P)H-binding M478_1602 PF01370 NAD dependent epimerase/dehydratase family M478_1603 PF12883 Protein of unknown function (DUF3828) M478_1604 PF01817 Chorismate mutase type II M478_1605 PF00005 ABC transporter M478_1606 PF00497 Bacterial extracellular solute-binding proteins, family 3 M478_1607 PF00528 Binding-protein-dependent transport system inner membrane component M478_1608 PF00528 Binding-protein-dependent transport system inner membrane component M478_1609 PF00892 EamA-like transporter family M478_161 PF00497 Bacterial extracellular solute-binding proteins, family 3 M478_161 PF01464 Transglycosylase SLT domain M478_1610 PF10100 Staphylopine dehydrogenase M478_1611 PF03059 Nicotianamine synthase protein M478_1612 PF00005 ABC transporter M478_1613 PF01032 FecCD transport family M478_1618 PF00497 Bacterial extracellular solute-binding proteins, family 3 M478_1619 PF05958 tRNA (Uracil-5-)-methyltransferase M478_162 PF02769 AIR synthase related protein, C-terminal domain M478_162 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal M478_162 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain M478_1620 PF10767 Protein of unknown function (DUF2593) M478_1621 PF00528 Binding-protein-dependent transport system inner membrane component M478_1622 PF00528 Binding-protein-dependent transport system inner membrane component M478_1623 PF08402 TOBE domain M478_1623 PF00005 ABC transporter M478_1624 PF13416 Bacterial extracellular solute-binding protein M478_1625 PF10722 Putative bacterial sensory transduction regulator M478_1626 PF07214 Protein of unknown function (DUF1418) M478_1627 PF00462 Glutaredoxin M478_1628 PF06826 Predicted Permease Membrane Region M478_1628 PF02080 TrkA-C domain M478_1630 PF01569 PAP2 superfamily M478_1631 PF01791 DeoC/LacD family aldolase M478_1632 PF00455 DeoR C terminal sensor domain M478_1632 PF08220 DeoR-like helix-turn-helix domain M478_1634 PF07943 Penicillin-binding protein 5, C-terminal domain M478_1634 PF00768 D-alanyl-D-alanine carboxypeptidase M478_1635 PF00528 Binding-protein-dependent transport system inner membrane component M478_1636 PF00005 ABC transporter M478_1636 PF09383 NIL domain M478_1637 PF03180 NLPA lipoprotein M478_1641 PF13417 Glutathione S-transferase, N-terminal domain M478_1641 PF00043 Glutathione S-transferase, C-terminal domain M478_1642 PF07715 TonB-dependent Receptor Plug Domain M478_1642 PF00593 TonB dependent receptor M478_1643 PF00005 ABC transporter M478_1644 PF01032 FecCD transport family M478_1646 PF00324 Amino acid permease M478_1648 PF03466 LysR substrate binding domain M478_1648 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M478_1649 PF03601 Conserved hypothetical protein 698 M478_1650 PF01261 Xylose isomerase-like TIM barrel M478_1651 PF13953 PapC C-terminal domain M478_1651 PF00577 Outer membrane usher protein M478_1651 PF13954 PapC N-terminal domain M478_1652 PF02753 Pili assembly chaperone PapD, C-terminal domain M478_1652 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain M478_1654 PF17550 Family of unknown function M478_1655 PF00486 Transcriptional regulatory protein, C terminal M478_1656 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit M478_1656 PF02378 Phosphotransferase system, EIIC M478_1657 PF00294 pfkB family carbohydrate kinase M478_1658 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 M478_1658 PF00381 PTS HPr component phosphorylation site M478_1659 PF00293 NUDIX domain M478_166 PF01797 Transposase IS200 like M478_1660 PF02653 Branched-chain amino acid transport system / permease component M478_1661 PF00005 ABC transporter M478_1663 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) M478_1664 PF02782 FGGY family of carbohydrate kinases, C-terminal domain M478_1664 PF00370 FGGY family of carbohydrate kinases, N-terminal domain M478_1665 PF00171 Aldehyde dehydrogenase family M478_1667 PF01842 ACT domain M478_1667 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain M478_1667 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain M478_1669 PF03692 Putative zinc- or iron-chelating domain M478_167 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M478_167 PF00512 His Kinase A (phospho-acceptor) domain M478_1670 PF03222 Tryptophan/tyrosine permease family M478_1671 PF01132 Elongation factor P (EF-P) OB domain M478_1671 PF09285 Elongation factor P, C-terminal M478_1671 PF08207 Elongation factor P (EF-P) KOW-like domain M478_1672 PF03786 D-mannonate dehydratase (UxuA) M478_1673 PF08125 Mannitol dehydrogenase C-terminal domain M478_1673 PF01232 Mannitol dehydrogenase Rossmann domain M478_1674 PF00392 Bacterial regulatory proteins, gntR family M478_1674 PF07729 FCD domain M478_1676 PF07683 Cobalamin synthesis protein cobW C-terminal domain M478_1676 PF02492 CobW/HypB/UreG, nucleotide-binding domain M478_1677 PF01569 PAP2 superfamily M478_1678 PF00877 NlpC/P60 family M478_168 PF13942 YfhG lipoprotein M478_1680 PF12792 CSS motif domain associated with EAL M478_1680 PF00563 EAL domain M478_1681 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle M478_1682 PF00528 Binding-protein-dependent transport system inner membrane component M478_1683 PF12911 N-terminal TM domain of oligopeptide transport permease C M478_1683 PF00528 Binding-protein-dependent transport system inner membrane component M478_1684 PF08352 Oligopeptide/dipeptide transporter, C-terminal region M478_1684 PF00005 ABC transporter M478_1685 PF13989 YejG-like protein M478_1686 PF07690 Major Facilitator Superfamily M478_1687 PF00849 RNA pseudouridylate synthase M478_1687 PF01479 S4 domain M478_1688 PF04851 Type III restriction enzyme, res subunit M478_1688 PF00271 Helicase conserved C-terminal domain M478_1689 PF01386 Ribosomal L25p family M478_169 PF00158 Sigma-54 interaction domain M478_169 PF00072 Response regulator receiver domain M478_1690 PF01797 Transposase IS200 like M478_1691 PF04245 37-kD nucleoid-associated bacterial protein M478_1692 PF07208 Protein of unknown function (DUF1414) M478_1693 PF11893 Domain of unknown function (DUF3413) M478_1693 PF00884 Sulfatase M478_1696 PF05638 Type VI secretion system effector, Hcp M478_17 PF00313 'Cold-shock' DNA-binding domain M478_170 PF02540 NAD synthase M478_170 PF00795 Carbon-nitrogen hydrolase M478_1700 PF00232 Glycosyl hydrolase family 1 M478_1702 PF01418 Helix-turn-helix domain, rpiR family M478_1702 PF01380 SIS domain M478_1703 PF07484 Phage Tail Collar Domain M478_1706 PF04865 Baseplate J-like protein M478_171 PF00543 Nitrogen regulatory protein P-II M478_1714 PF04984 Phage tail sheath protein subtilisin-like domain M478_1714 PF17482 Phage tail sheath C-terminal domain M478_1718 PF01261 Xylose isomerase-like TIM barrel M478_1719 PF08220 DeoR-like helix-turn-helix domain M478_1719 PF00455 DeoR C terminal sensor domain M478_172 PF14502 Helix-turn-helix domain M478_172 PF14503 YhfZ C-terminal domain M478_1720 PF00596 Class II Aldolase and Adducin N-terminal domain M478_1721 PF07005 Sugar-binding N-terminal domain M478_1721 PF17042 Nucleotide-binding C-terminal domain M478_1722 PF06530 Phage antitermination protein Q M478_1723 PF01381 Helix-turn-helix M478_1723 PF00717 Peptidase S24-like M478_1724 PF06183 DinI-like family M478_1725 PF01278 Omptin family M478_1726 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain M478_1726 PF00672 HAMP domain M478_1726 PF02743 Cache domain M478_1727 PF12706 Beta-lactamase superfamily domain M478_1729 PF00144 Beta-lactamase M478_173 PF14503 YhfZ C-terminal domain M478_173 PF14502 Helix-turn-helix domain M478_1732 PF01797 Transposase IS200 like M478_1733 PF00267 Gram-negative porin M478_1735 PF07690 Major Facilitator Superfamily M478_1736 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M478_1736 PF01627 Hpt domain M478_1736 PF16359 RcsD-ABL domain M478_1737 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M478_1737 PF01627 Hpt domain M478_1737 PF16359 RcsD-ABL domain M478_1738 PF00196 Bacterial regulatory proteins, luxR family M478_1738 PF00072 Response regulator receiver domain M478_1739 PF00512 His Kinase A (phospho-acceptor) domain M478_1739 PF09456 RcsC Alpha-Beta-Loop (ABL) M478_1739 PF00072 Response regulator receiver domain M478_1739 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M478_174 PF00665 Integrase core domain M478_174 PF02796 Helix-turn-helix domain of resolvase M478_1740 PF03989 DNA gyrase C-terminal domain, beta-propeller M478_1740 PF00521 DNA gyrase/topoisomerase IV, subunit A M478_1742 PF02867 Ribonucleotide reductase, barrel domain M478_1742 PF00317 Ribonucleotide reductase, all-alpha domain M478_1742 PF03477 ATP cone domain M478_1743 PF00268 Ribonucleotide reductase, small chain M478_1744 PF00111 2Fe-2S iron-sulfur cluster binding domain M478_1745 PF03974 Ecotin M478_1746 PF00994 Probable molybdopterin binding domain M478_1747 PF03222 Tryptophan/tyrosine permease family M478_1748 PF07437 YfaZ precursor M478_1749 PF00199 Catalase M478_1749 PF06628 Catalase-related immune-responsive M478_175 PF01695 IstB-like ATP binding protein M478_1750 PF06733 DEAD_2 M478_1750 PF13307 Helicase C-terminal domain M478_1751 PF00267 Gram-negative porin M478_1752 PF00892 EamA-like transporter family M478_1754 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain M478_1754 PF01276 Orn/Lys/Arg decarboxylase, major domain M478_1754 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain M478_1755 PF13520 Amino acid permease M478_1756 PF00528 Binding-protein-dependent transport system inner membrane component M478_1757 PF00005 ABC transporter M478_1758 PF00528 Binding-protein-dependent transport system inner membrane component M478_176 PF00042 Globin M478_176 PF00970 Oxidoreductase FAD-binding domain M478_176 PF00175 Oxidoreductase NAD-binding domain M478_1761 PF00581 Rhodanese-like domain M478_1764 PF00005 ABC transporter M478_1765 PF00005 ABC transporter M478_1766 PF02653 Branched-chain amino acid transport system / permease component M478_1767 PF02653 Branched-chain amino acid transport system / permease component M478_1768 PF00158 Sigma-54 interaction domain M478_1768 PF13188 PAS domain M478_1768 PF02954 Bacterial regulatory protein, Fis family M478_1769 PF07308 Protein of unknown function (DUF1456) M478_177 PF00464 Serine hydroxymethyltransferase M478_1770 PF00528 Binding-protein-dependent transport system inner membrane component M478_1771 PF00528 Binding-protein-dependent transport system inner membrane component M478_1773 PF00005 ABC transporter M478_1774 PF04226 Transglycosylase associated protein M478_1776 PF01844 HNH endonuclease M478_1777 PF01928 CYTH domain M478_1778 PF09330 D-lactate dehydrogenase, membrane binding M478_1778 PF01565 FAD binding domain M478_1779 PF00768 D-alanyl-D-alanine carboxypeptidase M478_178 PF13505 Outer membrane protein beta-barrel domain M478_1781 PF01207 Dihydrouridine synthase (Dus) M478_1783 PF01797 Transposase IS200 like M478_1784 PF01027 Inhibitor of apoptosis-promoting Bax1 M478_1785 PF02391 MoaE protein M478_1786 PF02597 ThiS family M478_1787 PF01967 MoaC family M478_1788 PF04055 Radical SAM superfamily M478_1788 PF06463 Molybdenum Cofactor Synthesis C M478_179 PF00874 PRD domain M478_1790 PF01933 Uncharacterised protein family UPF0052 M478_1791 PF09905 DNA-binding protein VF530 M478_1792 PF00271 Helicase conserved C-terminal domain M478_1792 PF17757 UvrB interaction domain M478_1792 PF12344 Ultra-violet resistance protein B M478_1792 PF02151 UvrB/uvrC motif M478_1792 PF04851 Type III restriction enzyme, res subunit M478_1795 PF08241 Methyltransferase domain M478_1796 PF00155 Aminotransferase class I and II M478_1797 PF04055 Radical SAM superfamily M478_1797 PF06968 Biotin and Thiamin Synthesis associated domain M478_1798 PF00202 Aminotransferase class-III M478_1799 PF10282 Lactonase, 7-bladed beta-propeller M478_18 PF00313 'Cold-shock' DNA-binding domain M478_180 PF12832 MFS_1 like family M478_1801 PF03459 TOBE domain M478_1801 PF00005 ABC transporter M478_1802 PF00528 Binding-protein-dependent transport system inner membrane component M478_1804 PF10766 Multidrug efflux pump-associated protein AcrZ M478_1805 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M478_1805 PF03459 TOBE domain M478_1806 PF00005 ABC transporter M478_1809 PF16363 GDP-mannose 4,6 dehydratase M478_181 PF06226 Protein of unknown function (DUF1007) M478_1810 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain M478_1810 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain M478_1811 PF00288 GHMP kinases N terminal domain M478_1811 PF10509 Galactokinase galactose-binding signature M478_1811 PF08544 GHMP kinases C terminal M478_1813 PF01263 Aldose 1-epimerase M478_1815 PF00300 Histidine phosphatase superfamily (branch 1) M478_1816 PF00793 DAHP synthetase I family M478_1818 PF01545 Cation efflux family M478_1819 PF04973 Nicotinamide mononucleotide transporter M478_182 PF03824 High-affinity nickel-transport protein M478_1820 PF02445 Quinolinate synthetase A protein M478_1824 PF13174 Tetratricopeptide repeat M478_1824 PF16331 TolA binding protein trimerisation M478_1825 PF00691 OmpA family M478_1826 PF04052 TolB amino-terminal domain M478_1826 PF07676 WD40-like Beta Propeller Repeat M478_1827 PF06519 TolA C-terminal M478_1827 PF06519 TolA C-terminal M478_1828 PF02472 Biopolymer transport protein ExbD/TolR M478_1829 PF01618 MotA/TolQ/ExbB proton channel family M478_183 PF00459 Inositol monophosphatase family M478_1830 PF03061 Thioesterase superfamily M478_1831 PF09600 Cyd operon protein YbgE (Cyd_oper_YbgE) M478_1832 PF08173 Membrane bound YbgT-like protein M478_1833 PF02322 Cytochrome bd terminal oxidase subunit II M478_1834 PF01654 Cytochrome bd terminal oxidase subunit I M478_1835 PF02629 CoA binding domain M478_1835 PF00549 CoA-ligase M478_1836 PF08442 ATP-grasp domain M478_1836 PF00549 CoA-ligase M478_1837 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) M478_1837 PF00364 Biotin-requiring enzyme M478_1837 PF02817 e3 binding domain M478_1838 PF00676 Dehydrogenase E1 component M478_1838 PF16870 2-oxoglutarate dehydrogenase C-terminal M478_1838 PF16078 2-oxoglutarate dehydrogenase N-terminus M478_1838 PF02779 Transketolase, pyrimidine binding domain M478_1839 PF13085 2Fe-2S iron-sulfur cluster binding domain M478_184 PF00588 SpoU rRNA Methylase family M478_1840 PF02910 Fumarate reductase flavoprotein C-term M478_1840 PF00890 FAD binding domain M478_1841 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit M478_1842 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit M478_1843 PF00285 Citrate synthase, C-terminal domain M478_1844 PF01025 GrpE M478_1845 PF01513 ATP-NAD kinase M478_1846 PF02463 RecF/RecN/SMC N terminal domain M478_1847 PF04355 SmpA / OmlA family M478_1848 PF03658 RnfH family Ubiquitin M478_1849 PF03364 Polyketide cyclase / dehydrase and lipid transport M478_185 PF02082 Transcriptional regulator M478_1850 PF01668 SmpB protein M478_1851 PF01797 Transposase IS200 like M478_1852 PF13356 Arm DNA-binding domain M478_1852 PF00589 Phage integrase family M478_186 PF00266 Aminotransferase class-V M478_1862 PF05973 Phage derived protein Gp49-like (DUF891) M478_1864 PF00665 Integrase core domain M478_1864 PF02796 Helix-turn-helix domain of resolvase M478_1865 PF01695 IstB-like ATP binding protein M478_1868 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin M478_187 PF01592 NifU-like N terminal domain M478_1870 PF00929 Exonuclease M478_1871 PF00075 RNase H M478_1872 PF08241 Methyltransferase domain M478_1873 PF00753 Metallo-beta-lactamase superfamily M478_1873 PF16123 Hydroxyacylglutathione hydrolase C-terminus M478_1874 PF01464 Transglycosylase SLT domain M478_1874 PF01476 LysM domain M478_1875 PF03372 Endonuclease/Exonuclease/phosphatase family M478_1877 PF00248 Aldo/keto reductase family M478_188 PF01521 Iron-sulphur cluster biosynthesis M478_1884 PF00005 ABC transporter M478_1884 PF09383 NIL domain M478_1885 PF00528 Binding-protein-dependent transport system inner membrane component M478_1886 PF03180 NLPA lipoprotein M478_1887 PF16358 RcsF lipoprotein M478_1888 PF18389 TrmO C-terminal domain M478_1888 PF01980 tRNA-methyltransferase O M478_1889 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) M478_1889 PF04073 Aminoacyl-tRNA editing domain M478_1889 PF03129 Anticodon binding domain M478_189 PF07743 HSCB C-terminal oligomerisation domain M478_189 PF00226 DnaJ domain M478_1890 PF04170 NlpE N-terminal domain M478_1890 PF17185 NlpE C-terminal OB domain M478_1891 PF00472 RF-1 domain M478_1892 PF07152 YaeQ protein M478_1893 PF06786 Uncharacterised protein family (UPF0253) M478_1894 PF07073 Modulator of Rho-dependent transcription termination (ROF) M478_1895 PF00034 Cytochrome c M478_1896 PF01171 PP-loop family M478_1896 PF11734 TilS substrate C-terminal domain M478_1896 PF09179 TilS substrate binding domain M478_1897 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily M478_1898 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit M478_1899 PF14579 Helix-hairpin-helix motif M478_1899 PF02811 PHP domain M478_1899 PF01336 OB-fold nucleic acid binding domain M478_1899 PF07733 Bacterial DNA polymerase III alpha NTPase domain M478_1899 PF17657 Bacterial DNA polymerase III alpha subunit finger domain M478_19 PF02537 CrcB-like protein, Camphor Resistance (CrcB) M478_190 PF00012 Hsp70 protein M478_1900 PF01351 Ribonuclease HII M478_1901 PF02684 Lipid-A-disaccharide synthetase M478_1902 PF00132 Bacterial transferase hexapeptide (six repeats) M478_1902 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 M478_1903 PF07977 FabA-like domain M478_1904 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD M478_1904 PF00132 Bacterial transferase hexapeptide (six repeats) M478_1905 PF03938 Outer membrane protein (OmpH-like) M478_1906 PF01103 Surface antigen M478_1906 PF07244 Surface antigen variable number repeat M478_1907 PF02163 Peptidase family M50 M478_1907 PF17820 PDZ domain M478_1909 PF01255 Putative undecaprenyl diphosphate synthase M478_191 PF00111 2Fe-2S iron-sulfur cluster binding domain M478_1910 PF13288 DXP reductoisomerase C-terminal domain M478_1910 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase M478_1910 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain M478_1911 PF01765 Ribosome recycling factor M478_1912 PF00696 Amino acid kinase family M478_1913 PF00889 Elongation factor TS M478_1914 PF00318 Ribosomal protein S2 M478_1915 PF00557 Metallopeptidase family M24 M478_1916 PF01966 HD domain M478_1916 PF01842 ACT domain M478_1916 PF01909 Nucleotidyltransferase domain M478_1916 PF08335 GlnD PII-uridylyltransferase M478_1917 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal M478_1917 PF14602 Hexapeptide repeat of succinyl-transferase M478_1917 PF00132 Bacterial transferase hexapeptide (six repeats) M478_1918 PF11944 Protein of unknown function (DUF3461) M478_1919 PF00258 Flavodoxin M478_192 PF04384 Iron-sulphur cluster assembly M478_1920 PF00849 RNA pseudouridylate synthase M478_1921 PF04287 tRNA pseudouridine synthase C M478_1922 PF01797 Transposase IS200 like M478_1923 PF07348 Syd protein (SUKH-2) M478_1924 PF14489 QueF-like protein M478_1924 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term M478_1925 PF03641 Possible lysine decarboxylase M478_1925 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases M478_1925 PF11892 Domain of unknown function (DUF3412) M478_1926 PF02796 Helix-turn-helix domain of resolvase M478_1926 PF00665 Integrase core domain M478_1928 PF01695 IstB-like ATP binding protein M478_1929 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain M478_1929 PF01367 5'-3' exonuclease, C-terminal SAM fold M478_193 PF00883 Cytosol aminopeptidase family, catalytic domain M478_193 PF12404 Peptidase M478_1930 PF18125 RlmM ferredoxin-like domain M478_1930 PF01728 FtsJ-like methyltransferase M478_1931 PF04241 Protein of unknown function (DUF423) M478_1932 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M478_1932 PF03466 LysR substrate binding domain M478_1934 PF00266 Aminotransferase class-V M478_1935 PF02657 Fe-S metabolism associated domain M478_1936 PF00899 ThiF family M478_1937 PF06725 3D domain M478_1937 PF03562 MltA specific insert domain M478_194 PF14581 SseB protein C-terminal domain M478_194 PF07179 SseB protein N-terminal domain M478_1940 PF01520 N-acetylmuramoyl-L-alanine amidase M478_1940 PF11741 AMIN domain M478_1941 PF00696 Amino acid kinase family M478_1941 PF00583 Acetyltransferase (GNAT) family M478_1942 PF13538 UvrD-like helicase C-terminal domain M478_1943 PF12705 PD-(D/E)XK nuclease superfamily M478_1943 PF00580 UvrD/REP helicase N-terminal domain M478_1943 PF13361 UvrD-like helicase C-terminal domain M478_1944 PF16187 Middle or third domain of peptidase_M16 M478_1944 PF05193 Peptidase M16 inactive domain M478_1944 PF00675 Insulinase (Peptidase family M16) M478_1945 PF17946 RecC C-terminal domain M478_1951 PF00303 Thymidylate synthase M478_1952 PF01790 Prolipoprotein diacylglyceryl transferase M478_1953 PF02896 PEP-utilising enzyme, TIM barrel domain M478_1953 PF00391 PEP-utilising enzyme, mobile domain M478_1953 PF05524 PEP-utilising enzyme, N-terminal M478_1953 PF01590 GAF domain M478_1954 PF00293 NUDIX domain M478_1955 PF02976 DNA mismatch repair enzyme MutH M478_1956 PF00248 Aldo/keto reductase family M478_1959 PF07690 Major Facilitator Superfamily M478_196 PF03797 Autotransporter beta-domain M478_196 PF16168 Adhesin of bacterial autotransporter system, probable stalk M478_196 PF03212 Pertactin M478_1960 PF00501 AMP-binding enzyme M478_1960 PF13193 AMP-binding enzyme C-terminal domain M478_1960 PF01553 Acyltransferase M478_1961 PF00384 Molybdopterin oxidoreductase M478_1961 PF01568 Molydopterin dinucleotide binding domain M478_1962 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain M478_1962 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain M478_1963 PF00356 Bacterial regulatory proteins, lacI family M478_1964 PF07690 Major Facilitator Superfamily M478_1965 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M478_1965 PF03466 LysR substrate binding domain M478_1966 PF03466 LysR substrate binding domain M478_1966 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M478_1968 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain M478_1968 PF02203 Tar ligand binding domain homologue M478_1968 PF00672 HAMP domain M478_197 PF16168 Adhesin of bacterial autotransporter system, probable stalk M478_197 PF03797 Autotransporter beta-domain M478_197 PF03212 Pertactin M478_1973 PF01478 Type IV leader peptidase family M478_1973 PF06750 Bacterial Peptidase A24 N-terminal domain M478_1980 PF07963 Prokaryotic N-terminal methylation motif M478_1980 PF08334 Type II secretion system (T2SS), protein G M478_1981 PF00482 Type II secretion system (T2SS), protein F M478_1984 PF00263 Bacterial type II and III secretion system protein M478_1984 PF03958 Bacterial type II/III secretion system short domain M478_1987 PF00484 Carbonic anhydrase M478_199 PF00334 Nucleoside diphosphate kinase M478_1991 PF09092 Lyase, N terminal M478_1991 PF09093 Lyase, catalytic M478_1991 PF02884 Polysaccharide lyase family 8, C-terminal beta-sandwich domain M478_1991 PF02278 Polysaccharide lyase family 8, super-sandwich domain M478_1992 PF01695 IstB-like ATP binding protein M478_1993 PF02796 Helix-turn-helix domain of resolvase M478_1993 PF00665 Integrase core domain M478_1994 PF13193 AMP-binding enzyme C-terminal domain M478_1994 PF00202 Aminotransferase class-III M478_1994 PF00668 Condensation domain M478_1994 PF00501 AMP-binding enzyme M478_1994 PF00550 Phosphopantetheine attachment site M478_1994 PF16197 Ketoacyl-synthetase C-terminal extension M478_1994 PF02801 Beta-ketoacyl synthase, C-terminal domain M478_1994 PF00109 Beta-ketoacyl synthase, N-terminal domain M478_1995 PF07715 TonB-dependent Receptor Plug Domain M478_1995 PF00593 TonB dependent receptor M478_1996 PF07687 Peptidase dimerisation domain M478_1996 PF01546 Peptidase family M20/M25/M40 M478_1997 PF03806 AbgT putative transporter family M478_1998 PF14496 C-terminal novel E3 ligase, LRR-interacting M478_1998 PF12468 Type III secretion system leucine rich repeat protein M478_1999 PF14496 C-terminal novel E3 ligase, LRR-interacting M478_1999 PF12468 Type III secretion system leucine rich repeat protein M478_1999 PF14496 C-terminal novel E3 ligase, LRR-interacting M478_1999 PF12468 Type III secretion system leucine rich repeat protein M478_2 PF02894 Oxidoreductase family, C-terminal alpha/beta domain M478_2 PF01408 Oxidoreductase family, NAD-binding Rossmann fold M478_20 PF02416 mttA/Hcf106 family M478_200 PF04055 Radical SAM superfamily M478_2000 PF14496 C-terminal novel E3 ligase, LRR-interacting M478_2000 PF12468 Type III secretion system leucine rich repeat protein M478_2001 PF03797 Autotransporter beta-domain M478_2003 PF07906 ShET2 enterotoxin, N-terminal region M478_2004 PF00873 AcrB/AcrD/AcrF family M478_2005 PF00529 HlyD membrane-fusion protein of T1SS M478_2005 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion M478_2007 PF03707 Bacterial signalling protein N terminal repeat M478_2007 PF00990 Diguanylate cyclase, GGDEF domain M478_2007 PF13188 PAS domain M478_2007 PF00563 EAL domain M478_2008 PF00665 Integrase core domain M478_2008 PF13276 HTH-like domain M478_2008 PF13333 Integrase core domain M478_2011 PF07715 TonB-dependent Receptor Plug Domain M478_2011 PF00593 TonB dependent receptor M478_2012 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) M478_2013 PF04183 IucA / IucC family M478_2013 PF06276 Ferric iron reductase FhuF-like transporter M478_2015 PF06276 Ferric iron reductase FhuF-like transporter M478_2015 PF04183 IucA / IucC family M478_2016 PF04183 IucA / IucC family M478_2016 PF06276 Ferric iron reductase FhuF-like transporter M478_202 PF13464 Domain of unknown function (DUF4115) M478_2020 PF00765 Autoinducer synthase M478_2021 PF00196 Bacterial regulatory proteins, luxR family M478_2021 PF03472 Autoinducer binding domain M478_2023 PF02517 CPBP intramembrane metalloprotease M478_2025 PF12759 InsA C-terminal domain M478_2025 PF03811 InsA N-terminal domain M478_203 PF04551 GcpE protein M478_2032 PF05736 OprF membrane domain M478_2032 PF00691 OmpA family M478_2034 PF10431 C-terminal, D2-small domain, of ClpB protein M478_2034 PF07724 AAA domain (Cdc48 subfamily) M478_2034 PF00004 ATPase family associated with various cellular activities (AAA) M478_2034 PF17871 AAA lid domain M478_2037 PF03811 InsA N-terminal domain M478_2037 PF12759 InsA C-terminal domain M478_2038 PF03400 IS1 transposase M478_204 PF13393 Histidyl-tRNA synthetase M478_204 PF03129 Anticodon binding domain M478_2042 PF12759 InsA C-terminal domain M478_2042 PF03811 InsA N-terminal domain M478_2043 PF03400 IS1 transposase M478_2045 PF02899 Phage integrase, N-terminal SAM-like domain M478_2045 PF00589 Phage integrase family M478_2047 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain M478_2047 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain M478_2047 PF01276 Orn/Lys/Arg decarboxylase, major domain M478_2048 PF13407 Periplasmic binding protein domain M478_2049 PF00005 ABC transporter M478_205 PF09976 Tetratricopeptide repeat-like domain M478_2050 PF02653 Branched-chain amino acid transport system / permease component M478_2051 PF07715 TonB-dependent Receptor Plug Domain M478_2053 PF01464 Transglycosylase SLT domain M478_2053 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain M478_2054 PF04362 Bacterial Fe(2+) trafficking M478_2055 PF00730 HhH-GPD superfamily base excision DNA repair protein M478_2055 PF14815 NUDIX domain M478_2055 PF00633 Helix-hairpin-helix motif M478_2055 PF10576 Iron-sulfur binding domain of endonuclease III M478_2056 PF02390 Putative methyltransferase M478_2057 PF04320 Protein with unknown function (DUF469) M478_2058 PF04960 Glutaminase M478_2059 PF11101 Protein of unknown function (DUF2884) M478_206 PF13360 PQQ-like domain M478_2060 PF11101 Protein of unknown function (DUF2884) M478_2061 PF11713 Peptidase C80 family M478_2061 PF07634 RtxA repeat M478_2061 PF11647 Membrane Localization Domain M478_2061 PF16671 Actin cross-linking domain M478_2061 PF12146 Serine aminopeptidase, S33 M478_2062 PF04055 Radical SAM superfamily M478_2062 PF06969 HemN C-terminal domain M478_2063 PF01725 Ham1 family M478_2064 PF02594 Uncharacterised ACR, YggU family COG1872 M478_2065 PF02325 YGGT family M478_2066 PF14748 Pyrroline-5-carboxylate reductase dimerisation M478_2066 PF03807 NADP oxidoreductase coenzyme F420-dependent M478_2067 PF01168 Alanine racemase, N-terminal domain M478_2068 PF00437 Type II/IV secretion system protein M478_2069 PF04371 Porphyromonas-type peptidyl-arginine deiminase M478_207 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal M478_207 PF01926 50S ribosome-binding GTPase M478_2070 PF00795 Carbon-nitrogen hydrolase M478_2071 PF03652 Holliday junction resolvase M478_2072 PF02622 Uncharacterized ACR, COG1678 M478_2073 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain M478_2073 PF02951 Prokaryotic glutathione synthetase, N-terminal domain M478_2074 PF04452 RNA methyltransferase M478_2075 PF04231 Endonuclease I M478_2076 PF17283 SprT-like zinc ribbon domain M478_2076 PF10263 SprT-like family M478_2077 PF02773 S-adenosylmethionine synthetase, C-terminal domain M478_2077 PF02772 S-adenosylmethionine synthetase, central domain M478_2077 PF00438 S-adenosylmethionine synthetase, N-terminal domain M478_2079 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain M478_2079 PF17944 Arginine decarboxylase C-terminal helical extension M478_2079 PF17810 Arginine decarboxylase helical bundle domain M478_2080 PF00355 Rieske [2Fe-2S] domain M478_2081 PF01435 Peptidase family M48 M478_2082 PF02779 Transketolase, pyrimidine binding domain M478_2082 PF02780 Transketolase, C-terminal domain M478_2082 PF00456 Transketolase, thiamine diphosphate binding domain M478_2084 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain M478_2084 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain M478_2085 PF00162 Phosphoglycerate kinase M478_2086 PF01116 Fructose-bisphosphate aldolase class-II M478_2087 PF05552 Conserved TM helix M478_2087 PF00924 Mechanosensitive ion channel M478_2088 PF01810 LysE type translocator M478_2089 PF04402 Protein of unknown function (DUF541) M478_209 PF07191 zinc-ribbons M478_2090 PF03466 LysR substrate binding domain M478_2090 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M478_2091 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) M478_2092 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain M478_2092 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain M478_2092 PF01842 ACT domain M478_2093 PF01812 5-formyltetrahydrofolate cyclo-ligase family M478_2094 PF05164 Cell division protein ZapA M478_2095 PF03695 Uncharacterised protein family (UPF0149) M478_2096 PF00557 Metallopeptidase family M24 M478_2096 PF05195 Aminopeptidase P, N-terminal domain M478_2097 PF01494 FAD binding domain M478_2098 PF01494 FAD binding domain M478_2099 PF01571 Aminomethyltransferase folate-binding domain M478_2099 PF08669 Glycine cleavage T-protein C-terminal barrel domain M478_21 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family M478_21 PF04055 Radical SAM superfamily M478_210 PF02601 Exonuclease VII, large subunit M478_210 PF13742 OB-fold nucleic acid binding domain M478_2100 PF01597 Glycine cleavage H-protein M478_2101 PF02347 Glycine cleavage system P-protein M478_2104 PF13018 Extended Signal Peptide of Type V secretion system M478_2104 PF03895 YadA-like membrane anchor domain M478_2104 PF05658 Head domain of trimeric autotransporter adhesin M478_2104 PF05662 Coiled stalk of trimeric autotransporter adhesin M478_2106 PF03006 Haemolysin-III related M478_2108 PF02796 Helix-turn-helix domain of resolvase M478_2108 PF00665 Integrase core domain M478_211 PF00571 CBS domain M478_211 PF00478 IMP dehydrogenase / GMP reductase domain M478_2110 PF01695 IstB-like ATP binding protein M478_2112 PF01571 Aminomethyltransferase folate-binding domain M478_2113 PF03937 Flavinator of succinate dehydrogenase M478_2114 PF00072 Response regulator receiver domain M478_2114 PF00486 Transcriptional regulatory protein, C terminal M478_2115 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M478_2115 PF00672 HAMP domain M478_2115 PF00512 His Kinase A (phospho-acceptor) domain M478_2116 PF06123 Inner membrane protein CreD M478_2117 PF00258 Flavodoxin M478_2118 PF02899 Phage integrase, N-terminal SAM-like domain M478_2118 PF00589 Phage integrase family M478_2119 PF10411 Disulfide bond isomerase protein N-terminus M478_2119 PF13098 Thioredoxin-like domain M478_212 PF00117 Glutamine amidotransferase class-I M478_212 PF00958 GMP synthase C terminal domain M478_212 PF02540 NAD synthase M478_2120 PF01368 DHH family M478_2120 PF02272 DHHA1 domain M478_2120 PF17768 RecJ OB domain M478_2121 PF00472 RF-1 domain M478_2121 PF03462 PCRF domain M478_2122 PF01336 OB-fold nucleic acid binding domain M478_2122 PF00152 tRNA synthetases class II (D, K and N) M478_2124 PF13356 Arm DNA-binding domain M478_2124 PF00589 Phage integrase family M478_2124 PF14659 Phage integrase, N-terminal SAM-like domain M478_2128 PF15723 Motility quorum-sensing regulator, toxin of MqsA M478_2129 PF15731 Antitoxin component of bacterial toxin-antitoxin system, MqsA M478_213 PF01797 Transposase IS200 like M478_214 PF05638 Type VI secretion system effector, Hcp M478_2146 PF03551 Transcriptional regulator PadR-like family M478_2147 PF05708 Permuted papain-like amidase enzyme, YaeF/YiiX, C92 family M478_2149 PF13407 Periplasmic binding protein domain M478_2150 PF02653 Branched-chain amino acid transport system / permease component M478_2151 PF00005 ABC transporter M478_2152 PF17912 MalK OB fold domain M478_2152 PF00005 ABC transporter M478_2153 PF13416 Bacterial extracellular solute-binding protein M478_2154 PF00528 Binding-protein-dependent transport system inner membrane component M478_2155 PF00528 Binding-protein-dependent transport system inner membrane component M478_2156 PF07745 Glycosyl hydrolase family 53 M478_2157 PF02449 Beta-galactosidase M478_2157 PF08532 Beta-galactosidase trimerisation domain M478_2157 PF08533 Beta-galactosidase C-terminal domain M478_2158 PF00367 phosphotransferase system, EIIB M478_2158 PF02378 Phosphotransferase system, EIIC M478_2159 PF02264 LamB porin M478_2160 PF00356 Bacterial regulatory proteins, lacI family M478_2161 PF17137 Domain of unknown function (DUF5110) M478_2161 PF01055 Glycosyl hydrolases family 31 M478_2161 PF16338 Domain of unknown function (DUF4968) M478_2161 PF13802 Galactose mutarotase-like M478_2162 PF07690 Major Facilitator Superfamily M478_2163 PF00356 Bacterial regulatory proteins, lacI family M478_2166 PF01116 Fructose-bisphosphate aldolase class-II M478_2168 PF00884 Sulfatase M478_2169 PF04055 Radical SAM superfamily M478_2169 PF13186 Iron-sulfur cluster-binding domain M478_2172 PF01979 Amidohydrolase family M478_2173 PF03610 PTS system fructose IIA component M478_2174 PF03613 PTS system mannose/fructose/sorbose family IID component M478_2175 PF03609 PTS system sorbose-specific iic component M478_2176 PF03830 PTS system sorbose subfamily IIB component M478_2177 PF01380 SIS domain M478_2178 PF08013 Tagatose 6 phosphate kinase M478_2179 PF08220 DeoR-like helix-turn-helix domain M478_2179 PF00455 DeoR C terminal sensor domain M478_2180 PF00884 Sulfatase M478_2183 PF02796 Helix-turn-helix domain of resolvase M478_2183 PF00665 Integrase core domain M478_2185 PF01695 IstB-like ATP binding protein M478_2186 PF00550 Phosphopantetheine attachment site M478_2186 PF08242 Methyltransferase domain M478_2186 PF00668 Condensation domain M478_2186 PF00501 AMP-binding enzyme M478_2187 PF00668 Condensation domain M478_2187 PF00501 AMP-binding enzyme M478_2187 PF13193 AMP-binding enzyme C-terminal domain M478_2188 PF00501 AMP-binding enzyme M478_2188 PF08242 Methyltransferase domain M478_2188 PF00668 Condensation domain M478_2188 PF00550 Phosphopantetheine attachment site M478_2191 PF00975 Thioesterase domain M478_2193 PF04954 Siderophore-interacting protein M478_2193 PF00005 ABC transporter M478_2193 PF00664 ABC transporter transmembrane region M478_2193 PF08021 Siderophore-interacting FAD-binding domain M478_2194 PF00664 ABC transporter transmembrane region M478_2194 PF00005 ABC transporter M478_2198 PF02447 GntP family permease M478_22 PF03099 Biotin/lipoate A/B protein ligase family M478_220 PF00872 Transposase, Mutator family M478_2202 PF12951 Passenger-associated-transport-repeat M478_2203 PF12951 Passenger-associated-transport-repeat M478_2204 PF04717 Type VI secretion system, phage-baseplate injector M478_2206 PF05593 RHS Repeat M478_2206 PF03527 RHS protein M478_2209 PF00939 Sodium:sulfate symporter transmembrane region M478_2210 PF00356 Bacterial regulatory proteins, lacI family M478_2211 PF00665 Integrase core domain M478_2211 PF13333 Integrase core domain M478_2211 PF13276 HTH-like domain M478_2214 PF00700 Bacterial flagellin C-terminal helical region M478_2214 PF00669 Bacterial flagellin N-terminal helical region M478_2215 PF18500 CadC C-terminal domain 1 M478_2215 PF00486 Transcriptional regulatory protein, C terminal M478_2219 PF06429 Flagellar basal body rod FlgEFG protein C-terminal M478_2219 PF00460 Flagella basal body rod protein M478_2221 PF02119 Flagellar P-ring protein M478_2222 PF02107 Flagellar L-ring protein M478_2223 PF06429 Flagellar basal body rod FlgEFG protein C-terminal M478_2223 PF00460 Flagella basal body rod protein M478_2224 PF00460 Flagella basal body rod protein M478_2224 PF06429 Flagellar basal body rod FlgEFG protein C-terminal M478_2225 PF06429 Flagellar basal body rod FlgEFG protein C-terminal M478_2225 PF00460 Flagella basal body rod protein M478_2225 PF07559 Flagellar basal body protein FlaE M478_2226 PF03963 Flagellar hook capping protein - N-terminal region M478_2226 PF13860 FlgD Ig-like domain M478_2226 PF13861 FlgD Tudor-like domain M478_2227 PF00460 Flagella basal body rod protein M478_2227 PF06429 Flagellar basal body rod FlgEFG protein C-terminal M478_2228 PF00460 Flagella basal body rod protein M478_2229 PF13144 Chaperone for flagella basal body P-ring formation M478_223 PF08543 Phosphomethylpyrimidine kinase M478_2233 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain M478_2233 PF18269 T3SS EscN ATPase C-terminal domain M478_2236 PF01514 Secretory protein of YscJ/FliF family M478_2236 PF08345 Flagellar M-ring protein C-terminal M478_2237 PF02049 Flagellar hook-basal body complex protein FliE M478_2238 PF02954 Bacterial regulatory protein, Fis family M478_2238 PF00072 Response regulator receiver domain M478_2238 PF00158 Sigma-54 interaction domain M478_2240 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term M478_2241 PF00813 FliP family M478_2242 PF01313 Bacterial export proteins, family 3 M478_2243 PF01311 Bacterial export proteins, family 1 M478_2244 PF01312 FlhB HrpN YscU SpaS Family M478_2245 PF00771 FHIPEP family M478_2246 PF00771 FHIPEP family M478_2249 PF01497 Periplasmic binding protein M478_2250 PF09222 Fimbrial adhesin F17-AG, lectin domain M478_2250 PF00419 Fimbrial protein M478_2251 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain M478_2251 PF02753 Pili assembly chaperone PapD, C-terminal domain M478_2252 PF00577 Outer membrane usher protein M478_2252 PF13954 PapC N-terminal domain M478_2252 PF13953 PapC C-terminal domain M478_2253 PF01797 Transposase IS200 like M478_2256 PF00263 Bacterial type II and III secretion system protein M478_2256 PF13629 Pilus formation protein N terminal region M478_2256 PF04972 BON domain M478_2257 PF04972 BON domain M478_2257 PF00263 Bacterial type II and III secretion system protein M478_2257 PF13629 Pilus formation protein N terminal region M478_2260 PF00437 Type II/IV secretion system protein M478_2267 PF02472 Biopolymer transport protein ExbD/TolR M478_2269 PF01618 MotA/TolQ/ExbB proton channel family M478_227 PF00781 Diacylglycerol kinase catalytic domain M478_2270 PF01053 Cys/Met metabolism PLP-dependent enzyme M478_2271 PF09335 SNARE associated Golgi protein M478_2272 PF12833 Helix-turn-helix domain M478_2272 PF06719 AraC-type transcriptional regulator N-terminus M478_2273 PF00465 Iron-containing alcohol dehydrogenase M478_2274 PF00248 Aldo/keto reductase family M478_2275 PF11842 Domain of unknown function (DUF3362) M478_2275 PF08497 Radical SAM N-terminal M478_2275 PF04055 Radical SAM superfamily M478_2276 PF08497 Radical SAM N-terminal M478_2276 PF04055 Radical SAM superfamily M478_2276 PF11842 Domain of unknown function (DUF3362) M478_2277 PF07731 Multicopper oxidase M478_2277 PF07732 Multicopper oxidase M478_2278 PF01553 Acyltransferase M478_2279 PF00521 DNA gyrase/topoisomerase IV, subunit A M478_2279 PF03989 DNA gyrase C-terminal domain, beta-propeller M478_2280 PF02525 Flavodoxin-like fold M478_2281 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M478_2281 PF03466 LysR substrate binding domain M478_2282 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M478_2282 PF01751 Toprim domain M478_2282 PF00986 DNA gyrase B subunit, carboxyl terminus M478_2282 PF00204 DNA gyrase B M478_2283 PF05728 Uncharacterised protein family (UPF0227) M478_2284 PF00149 Calcineurin-like phosphoesterase M478_2285 PF06853 Protein of unknown function (DUF1249) M478_2286 PF00293 NUDIX domain M478_2287 PF02321 Outer membrane efflux protein M478_2289 PF06693 Protein of unknown function (DUF1190) M478_229 PF07411 Domain of unknown function (DUF1508) M478_2290 PF03738 Glutathionylspermidine synthase preATP-grasp M478_2291 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase M478_2292 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase M478_2294 PF04380 Membrane fusogenic activity M478_2295 PF13520 Amino acid permease M478_2296 PF01467 Cytidylyltransferase-like M478_2296 PF00294 pfkB family carbohydrate kinase M478_2297 PF08335 GlnD PII-uridylyltransferase M478_2297 PF03710 Glutamate-ammonia ligase adenylyltransferase M478_2298 PF01928 CYTH domain M478_2299 PF08239 Bacterial SH3 domain M478_23 PF04359 Protein of unknown function (DUF493) M478_230 PF00486 Transcriptional regulatory protein, C terminal M478_230 PF00072 Response regulator receiver domain M478_2300 PF01966 HD domain M478_2300 PF01743 Poly A polymerase head domain M478_2300 PF12627 Probable RNA and SrmB- binding site of polymerase A M478_2301 PF02673 Bacitracin resistance protein BacA M478_2302 PF02152 Dihydroneopterin aldolase M478_2303 PF02660 Glycerol-3-phosphate acyltransferase M478_2304 PF00814 Glycoprotease family M478_2305 PF01165 Ribosomal protein S21 M478_2306 PF01807 CHC2 zinc finger M478_2306 PF08275 DNA primase catalytic core, N-terminal domain M478_2306 PF08278 DNA primase DnaG DnaB-binding M478_2306 PF10410 DnaB-helicase binding domain of primase M478_2307 PF04546 Sigma-70, non-essential region M478_2307 PF03979 Sigma-70 factor, region 1.1 M478_2307 PF04542 Sigma-70 region 2 M478_2307 PF00140 Sigma-70 factor, region 1.2 M478_2307 PF04545 Sigma-70, region 4 M478_2307 PF04539 Sigma-70 region 3 M478_231 PF00672 HAMP domain M478_231 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M478_231 PF00512 His Kinase A (phospho-acceptor) domain M478_2318 PF03466 LysR substrate binding domain M478_2318 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M478_232 PF07690 Major Facilitator Superfamily M478_2322 PF01042 Endoribonuclease L-PSP M478_2329 PF00529 HlyD membrane-fusion protein of T1SS M478_2329 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion M478_233 PF00873 AcrB/AcrD/AcrF family M478_2330 PF04632 Fusaric acid resistance protein family M478_2332 PF14310 Fibronectin type III-like domain M478_2332 PF01915 Glycosyl hydrolase family 3 C-terminal domain M478_2332 PF00933 Glycosyl hydrolase family 3 N terminal domain M478_2334 PF00528 Binding-protein-dependent transport system inner membrane component M478_2335 PF00528 Binding-protein-dependent transport system inner membrane component M478_2336 PF13416 Bacterial extracellular solute-binding protein M478_2337 PF00356 Bacterial regulatory proteins, lacI family M478_2338 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain M478_2339 PF00005 ABC transporter M478_2339 PF03459 TOBE domain M478_2339 PF17912 MalK OB fold domain M478_234 PF00873 AcrB/AcrD/AcrF family M478_2344 PF13018 Extended Signal Peptide of Type V secretion system M478_2344 PF13332 Hemagglutinin repeat M478_2344 PF05860 haemagglutination activity domain M478_2344 PF04829 Pre-toxin domain with VENN motif M478_2346 PF13018 Extended Signal Peptide of Type V secretion system M478_2346 PF05860 haemagglutination activity domain M478_2346 PF04829 Pre-toxin domain with VENN motif M478_2346 PF13332 Hemagglutinin repeat M478_2348 PF13332 Hemagglutinin repeat M478_2348 PF04829 Pre-toxin domain with VENN motif M478_2348 PF13018 Extended Signal Peptide of Type V secretion system M478_2348 PF05860 haemagglutination activity domain M478_2349 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB M478_2349 PF08479 POTRA domain, ShlB-type M478_2349 PF17287 POTRA domain M478_235 PF13533 Biotin-lipoyl like M478_2350 PF00092 von Willebrand factor type A domain M478_2351 PF02342 TerD domain M478_2353 PF00092 von Willebrand factor type A domain M478_2356 PF03729 Short repeat of unknown function (DUF308) M478_2357 PF07992 Pyridine nucleotide-disulphide oxidoreductase M478_2357 PF00724 NADH:flavin oxidoreductase / NADH oxidase family M478_2358 PF05175 Methyltransferase small domain M478_2359 PF03797 Autotransporter beta-domain M478_236 PF08402 TOBE domain M478_236 PF00005 ABC transporter M478_2360 PF01863 Protein of unknown function DUF45 M478_2361 PF01408 Oxidoreductase family, NAD-binding Rossmann fold M478_2362 PF00375 Sodium:dicarboxylate symporter family M478_2364 PF01797 Transposase IS200 like M478_2365 PF10688 Bacterial inner membrane protein M478_2366 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus M478_2366 PF08666 SAF domain M478_2367 PF08125 Mannitol dehydrogenase C-terminal domain M478_2367 PF01232 Mannitol dehydrogenase Rossmann domain M478_2368 PF02614 Glucuronate isomerase M478_2369 PF07690 Major Facilitator Superfamily M478_237 PF00155 Aminotransferase class I and II M478_237 PF00392 Bacterial regulatory proteins, gntR family M478_2370 PF07729 FCD domain M478_2370 PF00392 Bacterial regulatory proteins, gntR family M478_2372 PF09335 SNARE associated Golgi protein M478_2373 PF13721 SecD export protein N-terminal TM region M478_2375 PF05957 Bacterial protein of unknown function (DUF883) M478_2376 PF07332 Putative Actinobacterial Holin-X, holin superfamily III M478_2378 PF07681 DoxX M478_2379 PF13409 Glutathione S-transferase, N-terminal domain M478_238 PF00202 Aminotransferase class-III M478_2380 PF02796 Helix-turn-helix domain of resolvase M478_2380 PF00665 Integrase core domain M478_2381 PF01695 IstB-like ATP binding protein M478_2382 PF00293 NUDIX domain M478_2383 PF07517 SecA DEAD-like domain M478_2383 PF07516 SecA Wing and Scaffold domain M478_2383 PF01043 SecA preprotein cross-linking domain M478_2383 PF02810 SEC-C motif M478_2384 PF06558 Secretion monitor precursor protein (SecM) M478_2386 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase M478_2387 PF12327 FtsZ family, C-terminal domain M478_2387 PF00091 Tubulin/FtsZ family, GTPase domain M478_2388 PF02491 SHS2 domain inserted in FTSA M478_2389 PF03799 Cell division protein FtsQ M478_2389 PF08478 POTRA domain, FtsQ-type M478_2390 PF01820 D-ala D-ala ligase N-terminus M478_2390 PF07478 D-ala D-ala ligase C-terminus M478_2391 PF08245 Mur ligase middle domain M478_2391 PF02875 Mur ligase family, glutamate ligase domain M478_2391 PF01225 Mur ligase family, catalytic domain M478_2392 PF03033 Glycosyltransferase family 28 N-terminal domain M478_2392 PF04101 Glycosyltransferase family 28 C-terminal domain M478_2393 PF01098 Cell cycle protein M478_2394 PF02875 Mur ligase family, glutamate ligase domain M478_2394 PF08245 Mur ligase middle domain M478_2395 PF00953 Glycosyl transferase family 4 M478_2395 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 M478_2396 PF02875 Mur ligase family, glutamate ligase domain M478_2396 PF08245 Mur ligase middle domain M478_2396 PF01225 Mur ligase family, catalytic domain M478_2397 PF08245 Mur ligase middle domain M478_2397 PF02875 Mur ligase family, glutamate ligase domain M478_2397 PF01225 Mur ligase family, catalytic domain M478_2398 PF00905 Penicillin binding protein transpeptidase domain M478_2398 PF03717 Penicillin-binding Protein dimerisation domain M478_2399 PF04999 Cell division protein FtsL M478_24 PF00768 D-alanyl-D-alanine carboxypeptidase M478_24 PF07943 Penicillin-binding protein 5, C-terminal domain M478_240 PF00528 Binding-protein-dependent transport system inner membrane component M478_2400 PF01795 MraW methylase family M478_2401 PF02381 MraZ protein, putative antitoxin-like M478_2402 PF06610 L-alanine exporter M478_2403 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family M478_2403 PF00356 Bacterial regulatory proteins, lacI family M478_2404 PF01797 Transposase IS200 like M478_2405 PF10369 Small subunit of acetolactate synthase M478_2406 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain M478_2406 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain M478_2406 PF00205 Thiamine pyrophosphate enzyme, central domain M478_2407 PF00501 AMP-binding enzyme M478_2408 PF03466 LysR substrate binding domain M478_2408 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M478_241 PF00528 Binding-protein-dependent transport system inner membrane component M478_2410 PF01797 Transposase IS200 like M478_2411 PF00665 Integrase core domain M478_2411 PF02796 Helix-turn-helix domain of resolvase M478_2412 PF01695 IstB-like ATP binding protein M478_2413 PF05173 Dihydrodipicolinate reductase, C-terminus M478_2413 PF01113 Dihydrodipicolinate reductase, N-terminus M478_2414 PF00117 Glutamine amidotransferase class-I M478_2414 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain M478_2415 PF02142 MGS-like domain M478_2415 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain M478_2415 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain M478_2416 PF01810 LysE type translocator M478_2417 PF06738 Putative threonine/serine exporter M478_2418 PF12821 Threonine/Serine exporter, ThrE M478_2419 PF00186 Dihydrofolate reductase M478_242 PF00012 Hsp70 protein M478_2422 PF00149 Calcineurin-like phosphoesterase M478_2423 PF04379 ApaG domain M478_2424 PF00398 Ribosomal RNA adenine dimethylase M478_2425 PF04166 Pyridoxal phosphate biosynthetic protein PdxA M478_2426 PF09312 SurA N-terminal domain M478_2426 PF00639 PPIC-type PPIASE domain M478_2427 PF03968 OstA-like protein M478_2427 PF04453 LPS transport system D M478_2428 PF00226 DnaJ domain M478_2428 PF05099 Tellurite resistance protein TerB M478_2429 PF00849 RNA pseudouridylate synthase M478_243 PF01769 Divalent cation transporter M478_243 PF00571 CBS domain M478_243 PF03448 MgtE intracellular N domain M478_2438 PF07724 AAA domain (Cdc48 subfamily) M478_2438 PF17871 AAA lid domain M478_2438 PF10431 C-terminal, D2-small domain, of ClpB protein M478_2438 PF00004 ATPase family associated with various cellular activities (AAA) M478_2439 PF04717 Type VI secretion system, phage-baseplate injector M478_244 PF02541 Ppx/GppA phosphatase family M478_2446 PF05736 OprF membrane domain M478_2446 PF00691 OmpA family M478_2449 PF18339 RapA N-terminal Tudor like domain 1 M478_2449 PF00176 SNF2 family N-terminal domain M478_2449 PF18337 RapA N-terminal Tudor like domain M478_2449 PF00271 Helicase conserved C-terminal domain M478_2449 PF12137 RNA polymerase recycling family C-terminal M478_245 PF13090 Polyphosphate kinase C-terminal domain 2 M478_245 PF13089 Polyphosphate kinase N-terminal domain M478_245 PF02503 Polyphosphate kinase middle domain M478_245 PF17941 Polyphosphate kinase C-terminal domain 1 M478_2450 PF00136 DNA polymerase family B M478_2450 PF03104 DNA polymerase family B, exonuclease domain M478_2451 PF09335 SNARE associated Golgi protein M478_2452 PF00005 ABC transporter M478_2453 PF00528 Binding-protein-dependent transport system inner membrane component M478_2456 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle M478_2456 PF12793 Sugar transport-related sRNA regulator N-term M478_2457 PF07690 Major Facilitator Superfamily M478_2458 PF00694 Aconitase C-terminal domain M478_2459 PF00330 Aconitase family (aconitate hydratase) M478_246 PF00528 Binding-protein-dependent transport system inner membrane component M478_2460 PF00180 Isocitrate/isopropylmalate dehydrogenase M478_2461 PF08502 LeuA allosteric (dimerisation) domain M478_2461 PF00682 HMGL-like M478_2462 PF01797 Transposase IS200 like M478_2463 PF02401 LytB protein M478_2464 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase M478_2465 PF01252 Signal peptidase (SPase) II M478_2466 PF08264 Anticodon-binding domain of tRNA M478_2466 PF00133 tRNA synthetases class I (I, L, M and V) M478_2466 PF06827 Zinc finger found in FPG and IleRS M478_2467 PF01687 Riboflavin kinase M478_2467 PF06574 FAD synthetase M478_2468 PF01649 Ribosomal protein S20 M478_2469 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M478_2469 PF03466 LysR substrate binding domain M478_247 PF00528 Binding-protein-dependent transport system inner membrane component M478_2470 PF06965 Na+/H+ antiporter 1 M478_2471 PF00684 DnaJ central domain M478_2471 PF01556 DnaJ C terminal domain M478_2471 PF00226 DnaJ domain M478_2472 PF00012 Hsp70 protein M478_2473 PF01184 GPR1/FUN34/yaaH family M478_2475 PF07690 Major Facilitator Superfamily M478_2476 PF00994 Probable molybdopterin binding domain M478_2477 PF00923 Transaldolase/Fructose-6-phosphate aldolase M478_2478 PF03883 Peroxide stress protein YaaA M478_248 PF00005 ABC transporter M478_2480 PF14821 Threonine synthase N terminus M478_2480 PF00291 Pyridoxal-phosphate dependent enzyme M478_2481 PF08544 GHMP kinases C terminal M478_2481 PF00288 GHMP kinases N terminal domain M478_2482 PF00696 Amino acid kinase family M478_2482 PF01842 ACT domain M478_2482 PF13840 ACT domain M478_2482 PF00742 Homoserine dehydrogenase M478_2482 PF03447 Homoserine dehydrogenase, NAD binding domain M478_2484 PF00486 Transcriptional regulatory protein, C terminal M478_2484 PF00072 Response regulator receiver domain M478_2485 PF05981 CreA protein M478_2487 PF00300 Histidine phosphatase superfamily (branch 1) M478_2488 PF12833 Helix-turn-helix domain M478_2488 PF06445 GyrI-like small molecule binding domain M478_2489 PF01371 Trp repressor protein M478_2490 PF01931 Protein of unknown function DUF84 M478_2491 PF14718 Soluble lytic murein transglycosylase L domain M478_2491 PF01464 Transglycosylase SLT domain M478_2492 PF00690 Cation transporter/ATPase, N-terminus M478_2492 PF00689 Cation transporting ATPase, C-terminus M478_2494 PF00990 Diguanylate cyclase, GGDEF domain M478_2494 PF17152 Periplasmic sensor domain M478_2495 PF00691 OmpA family M478_2496 PF12848 ABC transporter M478_2496 PF00005 ABC transporter M478_2497 PF12848 ABC transporter M478_2497 PF00005 ABC transporter M478_2499 PF01381 Helix-turn-helix M478_2499 PF13521 AAA domain M478_25 PF05036 Sporulation related domain M478_25 PF03330 Lytic transglycolase M478_2500 PF18073 Rubredoxin metal binding domain M478_2501 PF18429 Domain of unknown function (DUF5609) M478_2502 PF10144 Bacterial virulence factor haemolysin M478_2503 PF01048 Phosphorylase superfamily M478_2504 PF01676 Metalloenzyme superfamily M478_2505 PF02885 Glycosyl transferase family, helical bundle domain M478_2505 PF00591 Glycosyl transferase family, a/b domain M478_2505 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain M478_2506 PF02885 Glycosyl transferase family, helical bundle domain M478_2506 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain M478_2506 PF00591 Glycosyl transferase family, a/b domain M478_2507 PF01791 DeoC/LacD family aldolase M478_2508 PF07670 Nucleoside recognition M478_2508 PF07662 Na+ dependent nucleoside transporter C-terminus M478_2508 PF01773 Na+ dependent nucleoside transporter N-terminus M478_2509 PF01026 TatD related DNase M478_251 PF13302 Acetyltransferase (GNAT) domain M478_2510 PF01734 Patatin-like phospholipase M478_2511 PF07043 Protein of unknown function (DUF1328) M478_2512 PF04972 BON domain M478_2513 PF03144 Elongation factor Tu domain 2 M478_2513 PF00009 Elongation factor Tu GTP binding domain M478_2513 PF16658 Class II release factor RF3, C-terminal domain M478_2514 PF00583 Acetyltransferase (GNAT) family M478_2515 PF03603 DNA polymerase III psi subunit M478_2516 PF08468 Methyltransferase small domain N-terminal M478_2516 PF05175 Methyltransferase small domain M478_2518 PF07256 Protein of unknown function (DUF1435) M478_2519 PF00990 Diguanylate cyclase, GGDEF domain M478_252 PF00551 Formyl transferase M478_2520 PF01095 Pectinesterase M478_2522 PF00873 AcrB/AcrD/AcrF family M478_2523 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion M478_2526 PF01075 Glycosyltransferase family 9 (heptosyltransferase) M478_2527 PF00370 FGGY family of carbohydrate kinases, N-terminal domain M478_2527 PF02782 FGGY family of carbohydrate kinases, C-terminal domain M478_2528 PF04198 Putative sugar-binding domain M478_2528 PF00325 Bacterial regulatory proteins, crp family M478_2529 PF00325 Bacterial regulatory proteins, crp family M478_2529 PF04198 Putative sugar-binding domain M478_253 PF02769 AIR synthase related protein, C-terminal domain M478_253 PF00586 AIR synthase related protein, N-terminal domain M478_2530 PF00005 ABC transporter M478_2531 PF02653 Branched-chain amino acid transport system / permease component M478_2532 PF02653 Branched-chain amino acid transport system / permease component M478_2533 PF13407 Periplasmic binding protein domain M478_2534 PF01791 DeoC/LacD family aldolase M478_2535 PF03992 Antibiotic biosynthesis monooxygenase M478_2536 PF10696 Protein of unknown function (DUF2501) M478_2537 PF00391 PEP-utilising enzyme, mobile domain M478_2537 PF02896 PEP-utilising enzyme, TIM barrel domain M478_2537 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 M478_2537 PF00381 PTS HPr component phosphorylation site M478_2537 PF05524 PEP-utilising enzyme, N-terminal M478_2539 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit M478_2540 PF12833 Helix-turn-helix domain M478_2541 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit M478_2543 PF05987 Bacterial protein of unknown function (DUF898) M478_2546 PF00665 Integrase core domain M478_2547 PF00665 Integrase core domain M478_255 PF01797 Transposase IS200 like M478_2552 PF01555 DNA methylase M478_2553 PF01527 Transposase M478_2555 PF12102 Domain of unknown function (DUF3578) M478_2555 PF07728 AAA domain (dynein-related subfamily) M478_2556 PF02796 Helix-turn-helix domain of resolvase M478_2556 PF00665 Integrase core domain M478_2558 PF01695 IstB-like ATP binding protein M478_2559 PF02580 D-Tyr-tRNA(Tyr) deacylase M478_256 PF00308 Bacterial dnaA protein M478_2560 PF03631 Virulence factor BrkB M478_2561 PF13419 Haloacid dehalogenase-like hydrolase M478_2563 PF00120 Glutamine synthetase, catalytic domain M478_2563 PF03951 Glutamine synthetase, beta-Grasp domain M478_2564 PF00989 PAS fold M478_2564 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M478_2564 PF00512 His Kinase A (phospho-acceptor) domain M478_2565 PF00158 Sigma-54 interaction domain M478_2565 PF00072 Response regulator receiver domain M478_2565 PF02954 Bacterial regulatory protein, Fis family M478_2566 PF04055 Radical SAM superfamily M478_2566 PF06969 HemN C-terminal domain M478_2567 PF04220 Der GTPase activator (YihI) M478_2568 PF01926 50S ribosome-binding GTPase M478_2569 PF01797 Transposase IS200 like M478_257 PF03960 ArsC family M478_2570 PF01797 Transposase IS200 like M478_2571 PF01612 3'-5' exonuclease M478_2571 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain M478_2571 PF01367 5'-3' exonuclease, C-terminal SAM fold M478_2571 PF00476 DNA polymerase family A M478_2572 PF01323 DSBA-like thioredoxin domain M478_2573 PF01636 Phosphotransferase enzyme family M478_2574 PF06288 Protein of unknown function (DUF1040) M478_2575 PF12804 MobA-like NTP transferase domain M478_2576 PF03205 Molybdopterin guanine dinucleotide synthesis protein B M478_2577 PF00872 Transposase, Mutator family M478_258 PF01435 Peptidase family M48 M478_258 PF07720 Tetratricopeptide repeat M478_2584 PF02142 MGS-like domain M478_2584 PF01808 AICARFT/IMPCHase bienzyme M478_2585 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain M478_2585 PF02843 Phosphoribosylglycinamide synthetase, C domain M478_2585 PF02844 Phosphoribosylglycinamide synthetase, N domain M478_2586 PF07356 Protein of unknown function (DUF1481) M478_2587 PF00216 Bacterial DNA-binding protein M478_2588 PF04222 Protein of unknown function (DUF416) M478_2589 PF04493 Endonuclease V M478_259 PF01594 AI-2E family transporter M478_2590 PF01208 Uroporphyrinogen decarboxylase (URO-D) M478_2592 PF09297 NADH pyrophosphatase zinc ribbon domain M478_2592 PF00293 NUDIX domain M478_2593 PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ M478_2594 PF01964 Radical SAM ThiC family M478_2594 PF13667 ThiC-associated domain M478_2595 PF02581 Thiamine monophosphate synthase M478_2596 PF00899 ThiF family M478_2598 PF05690 Thiazole biosynthesis protein ThiG M478_2599 PF04055 Radical SAM superfamily M478_2599 PF06968 Biotin and Thiamin Synthesis associated domain M478_26 PF01098 Cell cycle protein M478_2600 PF01797 Transposase IS200 like M478_2601 PF05000 RNA polymerase Rpb1, domain 4 M478_2601 PF04998 RNA polymerase Rpb1, domain 5 M478_2601 PF04983 RNA polymerase Rpb1, domain 3 M478_2601 PF04997 RNA polymerase Rpb1, domain 1 M478_2601 PF00623 RNA polymerase Rpb1, domain 2 M478_2602 PF04565 RNA polymerase Rpb2, domain 3 M478_2602 PF04561 RNA polymerase Rpb2, domain 2 M478_2602 PF04560 RNA polymerase Rpb2, domain 7 M478_2602 PF04563 RNA polymerase beta subunit M478_2602 PF10385 RNA polymerase beta subunit external 1 domain M478_2602 PF00562 RNA polymerase Rpb2, domain 6 M478_2604 PF00542 Ribosomal protein L7/L12 C-terminal domain M478_2604 PF16320 Ribosomal protein L7/L12 dimerisation domain M478_2605 PF00466 Ribosomal protein L10 M478_2606 PF00687 Ribosomal protein L1p/L10e family M478_2607 PF00298 Ribosomal protein L11, RNA binding domain M478_2607 PF03946 Ribosomal protein L11, N-terminal domain M478_2608 PF00467 KOW motif M478_2608 PF02357 Transcription termination factor nusG M478_2609 PF00584 SecE/Sec61-gamma subunits of protein translocation complex M478_2610 PF03143 Elongation factor Tu C-terminal domain M478_2610 PF00009 Elongation factor Tu GTP binding domain M478_2610 PF03144 Elongation factor Tu domain 2 M478_2615 PF01695 IstB-like ATP binding protein M478_2616 PF00665 Integrase core domain M478_2616 PF02796 Helix-turn-helix domain of resolvase M478_2617 PF13673 Acetyltransferase (GNAT) domain M478_2618 PF00485 Phosphoribulokinase / Uridine kinase family M478_2619 PF02237 Biotin protein ligase C terminal domain M478_2619 PF08279 HTH domain M478_2619 PF03099 Biotin/lipoate A/B protein ligase family M478_262 PF00578 AhpC/TSA family M478_2620 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain M478_2620 PF01565 FAD binding domain M478_2626 PF12724 Flavodoxin domain M478_2627 PF02386 Cation transport protein M478_2628 PF01205 Uncharacterized protein family UPF0029 M478_2628 PF09186 Domain of unknown function (DUF1949) M478_2629 PF01797 Transposase IS200 like M478_263 PF01842 ACT domain M478_2630 PF01205 Uncharacterized protein family UPF0029 M478_2630 PF09186 Domain of unknown function (DUF1949) M478_2631 PF00557 Metallopeptidase family M24 M478_2632 PF00378 Enoyl-CoA hydratase/isomerase M478_2632 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain M478_2632 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain M478_2633 PF00108 Thiolase, N-terminal domain M478_2633 PF02803 Thiolase, C-terminal domain M478_2634 PF00175 Oxidoreductase NAD-binding domain M478_2634 PF00970 Oxidoreductase FAD-binding domain M478_2635 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase M478_2636 PF02357 Transcription termination factor nusG M478_2637 PF00490 Delta-aminolevulinic acid dehydratase M478_2638 PF01026 TatD related DNase M478_2639 PF01695 IstB-like ATP binding protein M478_264 PF00701 Dihydrodipicolinate synthetase family M478_2641 PF02796 Helix-turn-helix domain of resolvase M478_2641 PF00665 Integrase core domain M478_2642 PF01026 TatD related DNase M478_2643 PF00902 Sec-independent protein translocase protein (TatC) M478_2645 PF02416 mttA/Hcf106 family M478_2646 PF03109 ABC1 family M478_2647 PF02036 SCP-2 sterol transfer family M478_2648 PF01209 ubiE/COQ5 methyltransferase family M478_2649 PF02646 RmuC family M478_265 PF06804 NlpB/DapX lipoprotein M478_2650 PF09335 SNARE associated Golgi protein M478_2651 PF02554 Carbon starvation protein CstA M478_2651 PF13722 5TM C-terminal transporter carbon starvation CstA M478_2653 PF01048 Phosphorylase superfamily M478_2654 PF01738 Dienelactone hydrolase family M478_2655 PF08267 Cobalamin-independent synthase, N-terminal domain M478_2655 PF01717 Cobalamin-independent synthase, Catalytic domain M478_2656 PF00892 EamA-like transporter family M478_2657 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M478_2657 PF03466 LysR substrate binding domain M478_2658 PF03547 Membrane transport protein M478_2659 PF03009 Glycerophosphoryl diester phosphodiesterase family M478_266 PF01797 Transposase IS200 like M478_2660 PF17912 MalK OB fold domain M478_2660 PF00005 ABC transporter M478_2661 PF00528 Binding-protein-dependent transport system inner membrane component M478_2662 PF00528 Binding-protein-dependent transport system inner membrane component M478_2663 PF13416 Bacterial extracellular solute-binding protein M478_267 PF01259 SAICAR synthetase M478_2671 PF00005 ABC transporter M478_2672 PF12399 Branched-chain amino acid ATP-binding cassette transporter M478_2672 PF00005 ABC transporter M478_2673 PF02653 Branched-chain amino acid transport system / permease component M478_2673 PF11862 Domain of unknown function (DUF3382) M478_2674 PF02653 Branched-chain amino acid transport system / permease component M478_2675 PF13458 Periplasmic binding protein M478_2676 PF12568 Acetyltransferase (GNAT) domain, PanZ M478_2677 PF01797 Transposase IS200 like M478_2678 PF04545 Sigma-70, region 4 M478_2678 PF04542 Sigma-70 region 2 M478_2678 PF00140 Sigma-70 factor, region 1.2 M478_2679 PF02687 FtsX-like permease family M478_2679 PF18075 FtsX extracellular domain M478_268 PF04228 Putative neutral zinc metallopeptidase M478_2680 PF00005 ABC transporter M478_2681 PF00448 SRP54-type protein, GTPase domain M478_2681 PF02881 SRP54-type protein, helical bundle domain M478_2681 PF02881 SRP54-type protein, helical bundle domain M478_2681 PF00448 SRP54-type protein, GTPase domain M478_2683 PF06611 Protein of unknown function (DUF1145) M478_2686 PF07947 YhhN family M478_2687 PF00403 Heavy-metal-associated domain M478_2688 PF01206 Sulfurtransferase TusA M478_2689 PF02592 Putative vitamin uptake transporter M478_269 PF04284 Protein of unknown function (DUF441) M478_2690 PF08786 DcrB M478_2691 PF02754 Cysteine-rich domain M478_2691 PF13183 4Fe-4S dicluster domain M478_2692 PF00890 FAD binding domain M478_2693 PF04324 BFD-like [2Fe-2S] binding domain M478_2693 PF01266 FAD dependent oxidoreductase M478_2694 PF03009 Glycerophosphoryl diester phosphodiesterase family M478_2697 PF12146 Serine aminopeptidase, S33 M478_2698 PF01810 LysE type translocator M478_2699 PF01810 LysE type translocator M478_27 PF03717 Penicillin-binding Protein dimerisation domain M478_27 PF00905 Penicillin binding protein transpeptidase domain M478_270 PF08351 Domain of unknown function (DUF1726) M478_270 PF13718 GNAT acetyltransferase 2 M478_270 PF05127 Helicase M478_270 PF17176 tRNA-binding domain M478_2700 PF09382 RQC domain M478_2700 PF00570 HRDC domain M478_2700 PF00271 Helicase conserved C-terminal domain M478_2700 PF00270 DEAD/DEAH box helicase M478_2700 PF16124 RecQ zinc-binding M478_2701 PF02253 Phospholipase A1 M478_2702 PF03061 Thioesterase superfamily M478_2703 PF00892 EamA-like transporter family M478_2704 PF01544 CorA-like Mg2+ transporter protein M478_2705 PF09370 Phosphoenolpyruvate hydrolase-like M478_2708 PF00580 UvrD/REP helicase N-terminal domain M478_2708 PF13361 UvrD-like helicase C-terminal domain M478_2709 PF13419 Haloacid dehalogenase-like hydrolase M478_271 PF13980 Uncharacterised protein family (UPF0370) M478_2710 PF00589 Phage integrase family M478_2710 PF02899 Phage integrase, N-terminal SAM-like domain M478_2711 PF04340 Protein of unknown function, DUF484 M478_2712 PF01678 Diaminopimelate epimerase M478_2713 PF13627 Prokaryotic lipoprotein-attachment site M478_2714 PF01491 Frataxin-like domain M478_2715 PF01295 Adenylate cyclase, class-I M478_2715 PF12633 Adenylate cyclase NT domain M478_2716 PF03900 Porphobilinogen deaminase, C-terminal domain M478_2716 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain M478_2717 PF02602 Uroporphyrinogen-III synthase HemD M478_2718 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase M478_2719 PF07219 HemY protein N-terminus M478_2719 PF07719 Tetratricopeptide repeat M478_272 PF02557 D-alanyl-D-alanine carboxypeptidase M478_2726 PF00324 Amino acid permease M478_2727 PF03808 Glycosyl transferase WecB/TagA/CpsF family M478_2728 PF06899 WzyE protein, O-antigen assembly polymerase M478_2729 PF07429 4-alpha-L-fucosyltransferase glycosyl transferase group 56 M478_273 PF01546 Peptidase family M20/M25/M40 M478_273 PF07687 Peptidase dimerisation domain M478_2730 PF01943 Polysaccharide biosynthesis protein M478_2731 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family M478_2733 PF00483 Nucleotidyl transferase M478_2734 PF16363 GDP-mannose 4,6 dehydratase M478_2735 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain M478_2735 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain M478_2735 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain M478_2736 PF02350 UDP-N-acetylglucosamine 2-epimerase M478_2737 PF02706 Chain length determinant protein M478_2738 PF00953 Glycosyl transferase family 4 M478_2739 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain M478_2739 PF07498 Rho termination factor, N-terminal domain M478_2739 PF07497 Rho termination factor, RNA-binding domain M478_274 PF03960 ArsC family M478_2740 PF00085 Thioredoxin M478_2741 PF00270 DEAD/DEAH box helicase M478_2741 PF00271 Helicase conserved C-terminal domain M478_2742 PF02541 Ppx/GppA phosphatase family M478_2743 PF02541 Ppx/GppA phosphatase family M478_2744 PF00580 UvrD/REP helicase N-terminal domain M478_2744 PF13361 UvrD-like helicase C-terminal domain M478_2747 PF00872 Transposase, Mutator family M478_2749 PF02753 Pili assembly chaperone PapD, C-terminal domain M478_2749 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain M478_2750 PF00577 Outer membrane usher protein M478_2750 PF13954 PapC N-terminal domain M478_2750 PF13953 PapC C-terminal domain M478_2752 PF02753 Pili assembly chaperone PapD, C-terminal domain M478_2752 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain M478_2753 PF01320 Colicin immunity protein / pyocin immunity protein M478_2758 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain M478_2758 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain M478_2759 PF03466 LysR substrate binding domain M478_2759 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M478_2765 PF00291 Pyridoxal-phosphate dependent enzyme M478_2765 PF00585 C-terminal regulatory domain of Threonine dehydratase M478_2766 PF00920 Dehydratase family M478_2767 PF01063 Amino-transferase class IV M478_2769 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain M478_2769 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain M478_2769 PF00205 Thiamine pyrophosphate enzyme, central domain M478_277 PF00528 Binding-protein-dependent transport system inner membrane component M478_2770 PF13335 Magnesium chelatase, subunit ChlI C-terminal M478_2770 PF01078 Magnesium chelatase, subunit ChlI M478_2771 PF04219 Protein of unknown function, DUF M478_2772 PF02653 Branched-chain amino acid transport system / permease component M478_2773 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M478_2773 PF03466 LysR substrate binding domain M478_2774 PF02653 Branched-chain amino acid transport system / permease component M478_2775 PF00005 ABC transporter M478_2776 PF13407 Periplasmic binding protein domain M478_278 PF00005 ABC transporter M478_278 PF08402 TOBE domain M478_2783 PF01177 Asp/Glu/Hydantoin racemase M478_2784 PF07715 TonB-dependent Receptor Plug Domain M478_2784 PF00593 TonB dependent receptor M478_2785 PF05958 tRNA (Uracil-5-)-methyltransferase M478_2786 PF07226 Protein of unknown function (DUF1422) M478_2787 PF00440 Bacterial regulatory proteins, tetR family M478_2788 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M478_2788 PF03466 LysR substrate binding domain M478_2789 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain M478_2789 PF07992 Pyridine nucleotide-disulphide oxidoreductase M478_279 PF00884 Sulfatase M478_2790 PF08534 Redoxin M478_2790 PF00462 Glutaredoxin M478_2791 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain M478_2791 PF07992 Pyridine nucleotide-disulphide oxidoreductase M478_2792 PF03544 Gram-negative bacterial TonB protein C-terminal M478_2793 PF00529 HlyD membrane-fusion protein of T1SS M478_2794 PF00005 ABC transporter M478_2794 PF00664 ABC transporter transmembrane region M478_2796 PF07715 TonB-dependent Receptor Plug Domain M478_2796 PF00593 TonB dependent receptor M478_2798 PF14698 Argininosuccinate lyase C-terminal M478_2798 PF00206 Lyase M478_2799 PF00696 Amino acid kinase family M478_28 PF02590 Predicted SPOUT methyltransferase M478_280 PF04055 Radical SAM superfamily M478_280 PF13186 Iron-sulfur cluster-binding domain M478_2800 PF02774 Semialdehyde dehydrogenase, dimerisation domain M478_2800 PF01118 Semialdehyde dehydrogenase, NAD binding domain M478_2801 PF01546 Peptidase family M20/M25/M40 M478_2801 PF07687 Peptidase dimerisation domain M478_2802 PF00311 Phosphoenolpyruvate carboxylase M478_2804 PF13276 HTH-like domain M478_2804 PF00665 Integrase core domain M478_2804 PF13333 Integrase core domain M478_2805 PF02219 Methylenetetrahydrofolate reductase M478_2806 PF03447 Homoserine dehydrogenase, NAD binding domain M478_2806 PF00696 Amino acid kinase family M478_2806 PF00742 Homoserine dehydrogenase M478_2807 PF01053 Cys/Met metabolism PLP-dependent enzyme M478_2808 PF01340 Met Apo-repressor, MetJ M478_2809 PF05360 yiaA/B two helix domain M478_281 PF04307 LexA-binding, inner membrane-associated putative hydrolase M478_2810 PF01197 Ribosomal protein L31 M478_2811 PF00271 Helicase conserved C-terminal domain M478_2811 PF00270 DEAD/DEAH box helicase M478_2811 PF18319 PriA DNA helicase Cys-rich region (CRR) domain M478_2811 PF18074 Primosomal protein N C-terminal domain M478_2811 PF17764 3′ DNA-binding domain (3′BD) M478_2813 PF00356 Bacterial regulatory proteins, lacI family M478_2814 PF05036 Sporulation related domain M478_2815 PF00227 Proteasome subunit M478_2816 PF00004 ATPase family associated with various cellular activities (AAA) M478_2816 PF07724 AAA domain (Cdc48 subfamily) M478_2816 PF10431 C-terminal, D2-small domain, of ClpB protein M478_2817 PF01040 UbiA prenyltransferase family M478_2818 PF03737 Aldolase/RraA M478_2821 PF00529 HlyD membrane-fusion protein of T1SS M478_2821 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion M478_2822 PF00664 ABC transporter transmembrane region M478_2822 PF03412 Peptidase C39 family M478_2822 PF00005 ABC transporter M478_2823 PF01695 IstB-like ATP binding protein M478_2828 PF01797 Transposase IS200 like M478_2829 PF06005 Cell division protein ZapB M478_283 PF00873 AcrB/AcrD/AcrF family M478_2830 PF00230 Major intrinsic protein M478_2831 PF02782 FGGY family of carbohydrate kinases, C-terminal domain M478_2831 PF00370 FGGY family of carbohydrate kinases, N-terminal domain M478_2832 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded M478_2833 PF00970 Oxidoreductase FAD-binding domain M478_2833 PF00175 Oxidoreductase NAD-binding domain M478_2834 PF05656 Protein of unknown function (DUF805) M478_2835 PF07305 Protein of unknown function (DUF1454) M478_2836 PF00121 Triosephosphate isomerase M478_2837 PF03466 LysR substrate binding domain M478_2837 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M478_2838 PF02585 GlcNAc-PI de-N-acetylase M478_2839 PF03737 Aldolase/RraA M478_2840 PF00939 Sodium:sulfate symporter transmembrane region M478_2844 PF00365 Phosphofructokinase M478_2845 PF01545 Cation efflux family M478_2845 PF16916 Dimerisation domain of Zinc Transporter M478_2846 PF04754 Putative transposase, YhgA-like M478_2847 PF07813 LTXXQ motif family protein M478_2848 PF00072 Response regulator receiver domain M478_2848 PF00486 Transcriptional regulatory protein, C terminal M478_2849 PF16527 Two-component sensor protein CpxA, periplasmic domain M478_2849 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M478_2849 PF00512 His Kinase A (phospho-acceptor) domain M478_2849 PF00672 HAMP domain M478_285 PF00072 Response regulator receiver domain M478_285 PF00196 Bacterial regulatory proteins, luxR family M478_2850 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain M478_2850 PF12833 Helix-turn-helix domain M478_2850 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain M478_2850 PF02805 Metal binding domain of Ada M478_2851 PF00588 SpoU rRNA Methylase family M478_2852 PF06426 Serine acetyltransferase, N-terminal M478_2852 PF00132 Bacterial transferase hexapeptide (six repeats) M478_2853 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus M478_2853 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus M478_2854 PF02556 Preprotein translocase subunit SecB M478_2855 PF00462 Glutaredoxin M478_2856 PF00581 Rhodanese-like domain M478_2857 PF06415 BPG-independent PGAM N-terminus (iPGM_N) M478_2857 PF01676 Metalloenzyme superfamily M478_2858 PF01551 Peptidase family M23 M478_2859 PF04748 Divergent polysaccharide deacetylase M478_286 PF00037 4Fe-4S binding domain M478_286 PF13187 4Fe-4S dicluster domain M478_286 PF12800 4Fe-4S binding domain M478_2860 PF04748 Divergent polysaccharide deacetylase M478_2861 PF00107 Zinc-binding dehydrogenase M478_2861 PF08240 Alcohol dehydrogenase GroES-like domain M478_2862 PF00155 Aminotransferase class I and II M478_2863 PF01370 NAD dependent epimerase/dehydratase family M478_2864 PF01075 Glycosyltransferase family 9 (heptosyltransferase) M478_2865 PF01075 Glycosyltransferase family 9 (heptosyltransferase) M478_2866 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) M478_2867 PF00535 Glycosyl transferase family 2 M478_2868 PF01467 Cytidylyltransferase-like M478_2869 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain M478_2869 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain M478_2869 PF06827 Zinc finger found in FPG and IleRS M478_287 PF03927 NapD protein M478_2870 PF00471 Ribosomal protein L33 M478_2871 PF00830 Ribosomal L28 family M478_2872 PF04002 RadC-like JAB domain M478_2873 PF04127 DNA / pantothenate metabolism flavoprotein M478_2873 PF02441 Flavoprotein M478_2874 PF00692 dUTPase M478_2875 PF00440 Bacterial regulatory proteins, tetR family M478_2876 PF00156 Phosphoribosyl transferase domain M478_2877 PF03725 3' exoribonuclease family, domain 2 M478_2877 PF01138 3' exoribonuclease family, domain 1 M478_2878 PF03755 YicC-like family, N-terminal region M478_2878 PF08340 Domain of unknown function (DUF1732) M478_2879 PF03458 UPF0126 domain M478_2880 PF01653 NAD-dependent DNA ligase adenylation domain M478_2880 PF03120 NAD-dependent DNA ligase OB-fold domain M478_2881 PF00625 Guanylate kinase M478_2882 PF01192 RNA polymerase Rpb6 M478_2883 PF02824 TGS domain M478_2883 PF04607 Region found in RelA / SpoT proteins M478_2883 PF13291 ACT domain M478_2884 PF12105 SpoU, rRNA methylase, C-terminal M478_2884 PF00588 SpoU rRNA Methylase family M478_2885 PF17191 RecG wedge domain M478_2885 PF00270 DEAD/DEAH box helicase M478_2885 PF00271 Helicase conserved C-terminal domain M478_2886 PF03616 Sodium/glutamate symporter M478_2887 PF00860 Permease family M478_2888 PF05170 AsmA family M478_2889 PF09500 Putative thioesterase (yiiD_Cterm) M478_2889 PF00583 Acetyltransferase (GNAT) family M478_2890 PF02796 Helix-turn-helix domain of resolvase M478_2890 PF00665 Integrase core domain M478_2891 PF01695 IstB-like ATP binding protein M478_2892 PF13409 Glutathione S-transferase, N-terminal domain M478_2893 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M478_2893 PF03466 LysR substrate binding domain M478_2894 PF02678 Pirin M478_2894 PF17954 Quercetinase C-terminal cupin domain M478_2895 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases M478_2896 PF04348 LppC putative lipoprotein M478_2897 PF02021 Uncharacterised protein family UPF0102 M478_2898 PF13580 SIS domain M478_2899 PF04972 BON domain M478_290 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) M478_2900 PF00912 Transglycosylase M478_2902 PF00989 PAS fold M478_2902 PF18415 Histidine kinase receptor ArcB trans-membrane domain M478_2902 PF01627 Hpt domain M478_2902 PF00072 Response regulator receiver domain M478_2902 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M478_2902 PF00512 His Kinase A (phospho-acceptor) domain M478_2903 PF04055 Radical SAM superfamily M478_2903 PF16199 Radical_SAM C-terminal domain M478_2904 PF01493 GXGXG motif M478_2904 PF01645 Conserved region in glutamate synthase M478_2904 PF04898 Glutamate synthase central domain M478_2904 PF00310 Glutamine amidotransferases class-II M478_2905 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster M478_2905 PF07992 Pyridine nucleotide-disulphide oxidoreductase M478_2907 PF04386 Stringent starvation protein B M478_2908 PF00043 Glutathione S-transferase, C-terminal domain M478_2908 PF02798 Glutathione S-transferase, N-terminal domain M478_2909 PF00380 Ribosomal protein S9/S16 M478_291 PF03264 NapC/NirT cytochrome c family, N-terminal region M478_2910 PF00572 Ribosomal protein L13 M478_2911 PF03969 AFG1-like ATPase M478_2912 PF06295 Protein of unknown function (DUF1043) M478_2913 PF00595 PDZ domain M478_2913 PF13180 PDZ domain M478_2914 PF01797 Transposase IS200 like M478_2915 PF13180 PDZ domain M478_2916 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) M478_2917 PF01722 BolA-like protein M478_2918 PF13466 STAS domain M478_2919 PF05494 MlaC protein M478_292 PF00293 NUDIX domain M478_2920 PF02470 MlaD protein M478_2921 PF02405 Permease MlaE M478_2922 PF00005 ABC transporter M478_2923 PF01699 Sodium/calcium exchanger protein M478_2924 PF01380 SIS domain M478_2924 PF00571 CBS domain M478_2926 PF06835 Lipopolysaccharide-assembly, LptC-related M478_2927 PF03968 OstA-like protein M478_2928 PF12399 Branched-chain amino acid ATP-binding cassette transporter M478_2928 PF00005 ABC transporter M478_2929 PF04963 Sigma-54 factor, core binding domain M478_2929 PF04552 Sigma-54, DNA binding domain M478_2929 PF00309 Sigma-54 factor, Activator interacting domain (AID) M478_293 PF03949 Malic enzyme, NAD binding domain M478_293 PF00390 Malic enzyme, N-terminal domain M478_293 PF01515 Phosphate acetyl/butaryl transferase M478_2930 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein M478_2931 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 M478_2932 PF03668 P-loop ATPase protein family M478_2933 PF00381 PTS HPr component phosphorylation site M478_2934 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain M478_2934 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain M478_2935 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain M478_2935 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain M478_2936 PF01042 Endoribonuclease L-PSP M478_2938 PF00356 Bacterial regulatory proteins, lacI family M478_2939 PF02378 Phosphotransferase system, EIIC M478_2939 PF00367 phosphotransferase system, EIIB M478_294 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 M478_2940 PF11941 Domain of unknown function (DUF3459) M478_2940 PF00128 Alpha amylase, catalytic domain M478_2941 PF14760 Rnk N-terminus M478_2941 PF01272 Transcription elongation factor, GreA/GreB, C-term M478_2942 PF07361 Cytochrome b562 M478_2944 PF01523 Putative modulator of DNA gyrase M478_2945 PF04751 Protein of unknown function (DUF615) M478_2946 PF01337 Barstar (barnase inhibitor) M478_2948 PF00171 Aldehyde dehydrogenase family M478_2949 PF00171 Aldehyde dehydrogenase family M478_295 PF01218 Coproporphyrinogen III oxidase M478_2950 PF04632 Fusaric acid resistance protein family M478_2951 PF13533 Biotin-lipoyl like M478_2952 PF07869 Protein of unknown function (DUF1656) M478_2953 PF03466 LysR substrate binding domain M478_2953 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M478_2956 PF18276 Tc toxin complex TcA C-terminal TcB-binding domain M478_2956 PF18413 Neuraminidase-like domain M478_2957 PF12255 Insecticide toxin TcdB middle/C-terminal region M478_2957 PF12256 Insecticide toxin TcdB middle/N-terminal region M478_2957 PF03534 Salmonella virulence plasmid 65kDa B protein M478_296 PF00583 Acetyltransferase (GNAT) family M478_2961 PF05785 Rho-activating domain of cytotoxic necrotizing factor M478_2961 PF18807 Tripartite Tc toxins repeat M478_2962 PF18807 Tripartite Tc toxins repeat M478_2962 PF14431 YwqJ-like deaminase M478_2963 PF01523 Putative modulator of DNA gyrase M478_2964 PF00795 Carbon-nitrogen hydrolase M478_2965 PF13502 AsmA-like C-terminal region M478_2965 PF13116 Protein of unknown function M478_2966 PF10150 Ribonuclease E/G family M478_2966 PF00575 S1 RNA binding domain M478_2967 PF02545 Maf-like protein M478_2968 PF04093 rod shape-determining protein MreD M478_2969 PF04085 rod shape-determining protein MreC M478_2971 PF17157 Gammaproteobacterial periplasmic sensor domain M478_2971 PF00990 Diguanylate cyclase, GGDEF domain M478_2971 PF00563 EAL domain M478_2972 PF08240 Alcohol dehydrogenase GroES-like domain M478_2972 PF00107 Zinc-binding dehydrogenase M478_2973 PF00174 Oxidoreductase molybdopterin binding domain M478_2974 PF01794 Ferric reductase like transmembrane component M478_2975 PF01220 Dehydroquinase class II M478_2976 PF00364 Biotin-requiring enzyme M478_2977 PF02785 Biotin carboxylase C-terminal domain M478_2977 PF00289 Biotin carboxylase, N-terminal domain M478_2977 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain M478_2979 PF06196 Protein of unknown function (DUF997) M478_2980 PF00474 Sodium:solute symporter family M478_2982 PF01207 Dihydrouridine synthase (Dus) M478_2983 PF02954 Bacterial regulatory protein, Fis family M478_2986 PF07690 Major Facilitator Superfamily M478_2987 PF02627 Carboxymuconolactone decarboxylase family M478_2988 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase M478_2988 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase M478_2989 PF00753 Metallo-beta-lactamase superfamily M478_299 PF03212 Pertactin M478_299 PF16168 Adhesin of bacterial autotransporter system, probable stalk M478_299 PF03797 Autotransporter beta-domain M478_299 PF13018 Extended Signal Peptide of Type V secretion system M478_2990 PF05433 Glycine zipper 2TM domain M478_2991 PF00313 'Cold-shock' DNA-binding domain M478_2992 PF00313 'Cold-shock' DNA-binding domain M478_2993 PF01797 Transposase IS200 like M478_2996 PF02798 Glutathione S-transferase, N-terminal domain M478_2997 PF00571 CBS domain M478_2997 PF01380 SIS domain M478_2998 PF02782 FGGY family of carbohydrate kinases, C-terminal domain M478_2998 PF00370 FGGY family of carbohydrate kinases, N-terminal domain M478_3 PF13407 Periplasmic binding protein domain M478_30 PF01467 Cytidylyltransferase-like M478_300 PF04076 Bacterial OB fold (BOF) protein M478_3000 PF02653 Branched-chain amino acid transport system / permease component M478_3001 PF00005 ABC transporter M478_3003 PF03279 Bacterial lipid A biosynthesis acyltransferase M478_3005 PF00999 Sodium/hydrogen exchanger family M478_3006 PF00860 Permease family M478_3007 PF04221 RelB antitoxin M478_3008 PF00005 ABC transporter M478_3009 PF00528 Binding-protein-dependent transport system inner membrane component M478_301 PF06572 Protein of unknown function (DUF1131) M478_3010 PF00296 Luciferase-like monooxygenase M478_3011 PF09084 NMT1/THI5 like M478_3012 PF03358 NADPH-dependent FMN reductase M478_3014 PF00294 pfkB family carbohydrate kinase M478_3015 PF05025 RbsD / FucU transport protein family M478_3016 PF12833 Helix-turn-helix domain M478_3016 PF02311 AraC-like ligand binding domain M478_3017 PF01408 Oxidoreductase family, NAD-binding Rossmann fold M478_3017 PF02894 Oxidoreductase family, C-terminal alpha/beta domain M478_302 PF04261 Dyp-type peroxidase family M478_3020 PF03527 RHS protein M478_3020 PF05593 RHS Repeat M478_3022 PF04717 Type VI secretion system, phage-baseplate injector M478_3028 PF14220 Domain of unknown function (DUF4329) M478_3028 PF03527 RHS protein M478_3028 PF05593 RHS Repeat M478_303 PF00701 Dihydrodipicolinate synthetase family M478_3031 PF04717 Type VI secretion system, phage-baseplate injector M478_3039 PF00004 ATPase family associated with various cellular activities (AAA) M478_3039 PF17871 AAA lid domain M478_3039 PF10431 C-terminal, D2-small domain, of ClpB protein M478_3039 PF07724 AAA domain (Cdc48 subfamily) M478_304 PF04131 Putative N-acetylmannosamine-6-phosphate epimerase M478_3047 PF02796 Helix-turn-helix domain of resolvase M478_3047 PF00665 Integrase core domain M478_3049 PF01695 IstB-like ATP binding protein M478_305 PF12468 Type III secretion system leucine rich repeat protein M478_3054 PF05638 Type VI secretion system effector, Hcp M478_3056 PF07148 Maltose operon periplasmic protein precursor (MalM) M478_3057 PF02264 LamB porin M478_3058 PF00005 ABC transporter M478_3058 PF17912 MalK OB fold domain M478_306 PF00480 ROK family M478_3060 PF01547 Bacterial extracellular solute-binding protein M478_3061 PF00528 Binding-protein-dependent transport system inner membrane component M478_3061 PF14785 Maltose transport system permease protein MalF P2 domain M478_3062 PF00528 Binding-protein-dependent transport system inner membrane component M478_3063 PF06146 Phosphate-starvation-inducible E M478_3064 PF00342 Phosphoglucose isomerase M478_3065 PF01842 ACT domain M478_3065 PF00696 Amino acid kinase family M478_3066 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB M478_3066 PF08479 POTRA domain, ShlB-type M478_3066 PF17287 POTRA domain M478_3067 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB M478_3067 PF08479 POTRA domain, ShlB-type M478_3067 PF17287 POTRA domain M478_3068 PF13332 Hemagglutinin repeat M478_3068 PF05860 haemagglutination activity domain M478_3069 PF02574 Homocysteine S-methyltransferase M478_3069 PF02965 Vitamin B12 dependent methionine synthase, activation domain M478_3069 PF02607 B12 binding domain M478_3069 PF02310 B12 binding domain M478_3069 PF00809 Pterin binding enzyme M478_307 PF04074 YhcH/YjgK/YiaL M478_3070 PF01614 Bacterial transcriptional regulator M478_3070 PF09339 IclR helix-turn-helix domain M478_3071 PF01614 Bacterial transcriptional regulator M478_3071 PF09339 IclR helix-turn-helix domain M478_3072 PF06315 Isocitrate dehydrogenase kinase/phosphatase (AceK) M478_3073 PF00463 Isocitrate lyase family M478_3074 PF01274 Malate synthase M478_3075 PF04204 Homoserine O-succinyltransferase M478_308 PF01380 SIS domain M478_308 PF01418 Helix-turn-helix domain, rpiR family M478_3084 PF00392 Bacterial regulatory proteins, gntR family M478_3084 PF07729 FCD domain M478_3086 PF07690 Major Facilitator Superfamily M478_3087 PF00294 pfkB family carbohydrate kinase M478_3088 PF05025 RbsD / FucU transport protein family M478_3089 PF02705 K+ potassium transporter M478_309 PF07690 Major Facilitator Superfamily M478_3090 PF12592 Protein of unknown function (DUF3763) M478_3090 PF07728 AAA domain (dynein-related subfamily) M478_3090 PF17868 AAA lid domain M478_3091 PF05762 VWA domain containing CoxE-like protein M478_3092 PF03590 Aspartate-ammonia ligase M478_3093 PF01037 Lrp/AsnC ligand binding domain M478_3094 PF00258 Flavodoxin M478_3095 PF13932 GidA associated domain M478_3095 PF01134 Glucose inhibited division protein A M478_3096 PF02527 rRNA small subunit methyltransferase G M478_3097 PF03899 ATP synthase I chain M478_3098 PF00119 ATP synthase A chain M478_3099 PF00137 ATP synthase subunit C M478_31 PF14840 Processivity clamp loader gamma complex DNA pol III C-term M478_31 PF06144 DNA polymerase III, delta subunit M478_3100 PF00430 ATP synthase B/B' CF(0) M478_3101 PF00213 ATP synthase delta (OSCP) subunit M478_3102 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain M478_3102 PF00306 ATP synthase alpha/beta chain, C terminal domain M478_3102 PF02874 ATP synthase alpha/beta family, beta-barrel domain M478_3103 PF00231 ATP synthase M478_3104 PF02874 ATP synthase alpha/beta family, beta-barrel domain M478_3104 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain M478_3105 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain M478_3105 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain M478_3106 PF12804 MobA-like NTP transferase domain M478_3106 PF00132 Bacterial transferase hexapeptide (six repeats) M478_3107 PF01380 SIS domain M478_3108 PF12849 PBP superfamily domain M478_3109 PF00528 Binding-protein-dependent transport system inner membrane component M478_311 PF00528 Binding-protein-dependent transport system inner membrane component M478_3110 PF00528 Binding-protein-dependent transport system inner membrane component M478_3111 PF00005 ABC transporter M478_3112 PF01895 PhoU domain M478_3114 PF00497 Bacterial extracellular solute-binding proteins, family 3 M478_3115 PF00528 Binding-protein-dependent transport system inner membrane component M478_3116 PF00528 Binding-protein-dependent transport system inner membrane component M478_3117 PF13419 Haloacid dehalogenase-like hydrolase M478_3118 PF00860 Permease family M478_312 PF00528 Binding-protein-dependent transport system inner membrane component M478_3121 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase M478_3121 PF12241 Trans-2-enoyl-CoA reductase catalytic region M478_3121 PF07055 Enoyl reductase FAD binding domain M478_3122 PF10396 GTP-binding protein TrmE N-terminus M478_3122 PF12631 MnmE helical domain M478_3122 PF01926 50S ribosome-binding GTPase M478_3123 PF02096 60Kd inner membrane protein M478_3123 PF14849 YidC periplasmic domain M478_3124 PF01809 Putative membrane protein insertion efficiency factor M478_3125 PF00825 Ribonuclease P M478_3126 PF00468 Ribosomal protein L34 M478_3128 PF08299 Bacterial dnaA protein helix-turn-helix M478_3128 PF11638 DnaA N-terminal domain M478_3128 PF00308 Bacterial dnaA protein M478_3129 PF02768 DNA polymerase III beta subunit, C-terminal domain M478_3129 PF00712 DNA polymerase III beta subunit, N-terminal domain M478_3129 PF02767 DNA polymerase III beta subunit, central domain M478_313 PF00005 ABC transporter M478_3130 PF02463 RecF/RecN/SMC N terminal domain M478_3131 PF01751 Toprim domain M478_3131 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M478_3131 PF18053 DNA gyrase B subunit insert domain M478_3131 PF00986 DNA gyrase B subunit, carboxyl terminus M478_3131 PF00204 DNA gyrase B M478_3133 PF13333 Integrase core domain M478_3133 PF13276 HTH-like domain M478_3133 PF00665 Integrase core domain M478_3136 PF02423 Ornithine cyclodeaminase/mu-crystallin family M478_3137 PF13291 ACT domain M478_3137 PF00291 Pyridoxal-phosphate dependent enzyme M478_3138 PF07676 WD40-like Beta Propeller Repeat M478_3138 PF12566 Protein of unknown function (DUF3748) M478_3139 PF07676 WD40-like Beta Propeller Repeat M478_3139 PF12566 Protein of unknown function (DUF3748) M478_314 PF00291 Pyridoxal-phosphate dependent enzyme M478_3140 PF07119 Protein of unknown function (DUF1375) M478_3141 PF00011 Hsp20/alpha crystallin family M478_3142 PF00011 Hsp20/alpha crystallin family M478_3143 PF06826 Predicted Permease Membrane Region M478_3143 PF02080 TrkA-C domain M478_3144 PF00155 Aminotransferase class I and II M478_3146 PF00128 Alpha amylase, catalytic domain M478_3147 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain M478_3147 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain M478_3149 PF13488 Glycine zipper M478_3149 PF00691 OmpA family M478_3151 PF03352 Methyladenine glycosylase M478_3153 PF02091 Glycyl-tRNA synthetase alpha subunit M478_3154 PF02092 Glycyl-tRNA synthetase beta subunit M478_3154 PF05746 DALR anticodon binding domain M478_3155 PF11254 Protein of unknown function (DUF3053) M478_3156 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 M478_3156 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit M478_3156 PF02378 Phosphotransferase system, EIIC M478_3157 PF08125 Mannitol dehydrogenase C-terminal domain M478_3157 PF01232 Mannitol dehydrogenase Rossmann domain M478_3158 PF05068 Mannitol repressor M478_316 PF00072 Response regulator receiver domain M478_316 PF00486 Transcriptional regulatory protein, C terminal M478_3160 PF10928 Protein of unknown function (DUF2810) M478_3164 PF00672 HAMP domain M478_3164 PF02203 Tar ligand binding domain homologue M478_3164 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain M478_3165 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain M478_3165 PF02777 Iron/manganese superoxide dismutases, C-terminal domain M478_3166 PF02634 FdhD/NarQ family M478_3167 PF01568 Molydopterin dinucleotide binding domain M478_3167 PF04879 Molybdopterin oxidoreductase Fe4S4 domain M478_3167 PF00384 Molybdopterin oxidoreductase M478_3168 PF04879 Molybdopterin oxidoreductase Fe4S4 domain M478_3168 PF01568 Molydopterin dinucleotide binding domain M478_3168 PF00384 Molybdopterin oxidoreductase M478_3169 PF13247 4Fe-4S dicluster domain M478_3169 PF09163 Formate dehydrogenase N, transmembrane M478_317 PF00672 HAMP domain M478_317 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M478_317 PF00512 His Kinase A (phospho-acceptor) domain M478_3170 PF01292 Prokaryotic cytochrome b561 M478_3171 PF04216 Protein involved in formate dehydrogenase formation M478_3172 PF12390 Selenocysteine synthase N terminal M478_3172 PF03841 L-seryl-tRNA selenium transferase M478_3173 PF03144 Elongation factor Tu domain 2 M478_3173 PF09107 Elongation factor SelB, winged helix M478_3173 PF09106 Elongation factor SelB, winged helix M478_3173 PF00009 Elongation factor Tu GTP binding domain M478_3174 PF13700 Domain of unknown function (DUF4158) M478_3174 PF01526 Tn3 transposase DDE domain M478_3179 PF07690 Major Facilitator Superfamily M478_3180 PF00665 Integrase core domain M478_3180 PF13276 HTH-like domain M478_3180 PF13333 Integrase core domain M478_3182 PF01757 Acyltransferase family M478_3183 PF00419 Fimbrial protein M478_3184 PF00577 Outer membrane usher protein M478_3184 PF13953 PapC C-terminal domain M478_3184 PF13954 PapC N-terminal domain M478_3185 PF13954 PapC N-terminal domain M478_3185 PF00577 Outer membrane usher protein M478_3185 PF13953 PapC C-terminal domain M478_3186 PF02753 Pili assembly chaperone PapD, C-terminal domain M478_3186 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain M478_3188 PF02782 FGGY family of carbohydrate kinases, C-terminal domain M478_3188 PF00370 FGGY family of carbohydrate kinases, N-terminal domain M478_319 PF00155 Aminotransferase class I and II M478_3190 PF13407 Periplasmic binding protein domain M478_3191 PF00005 ABC transporter M478_3192 PF02653 Branched-chain amino acid transport system / permease component M478_3193 PF12833 Helix-turn-helix domain M478_3195 PF00589 Phage integrase family M478_3195 PF13356 Arm DNA-binding domain M478_3195 PF14659 Phage integrase, N-terminal SAM-like domain M478_3197 PF04606 Ogr/Delta-like zinc finger M478_3198 PF13737 Transposase DDE domain M478_3199 PF13737 Transposase DDE domain M478_32 PF04390 Lipopolysaccharide-assembly M478_3202 PF00005 ABC transporter M478_3204 PF01032 FecCD transport family M478_3205 PF01032 FecCD transport family M478_3206 PF01497 Periplasmic binding protein M478_3209 PF00156 Phosphoribosyl transferase domain M478_321 PF05195 Aminopeptidase P, N-terminal domain M478_321 PF00557 Metallopeptidase family M24 M478_3210 PF00291 Pyridoxal-phosphate dependent enzyme M478_3211 PF17392 Urocanase C-terminal domain M478_3211 PF17391 Urocanase N-terminal domain M478_3211 PF01175 Urocanase Rossmann-like domain M478_3212 PF00221 Aromatic amino acid lyase M478_3213 PF00324 Amino acid permease M478_3214 PF12146 Serine aminopeptidase, S33 M478_3215 PF00884 Sulfatase M478_3215 PF08019 Phosphoethanolamine transferase EptA/EptB M478_3216 PF00196 Bacterial regulatory proteins, luxR family M478_3216 PF00072 Response regulator receiver domain M478_3217 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M478_3217 PF05231 MASE1 M478_3217 PF07730 Histidine kinase M478_3218 PF00665 Integrase core domain M478_3218 PF02796 Helix-turn-helix domain of resolvase M478_3219 PF01695 IstB-like ATP binding protein M478_3220 PF00132 Bacterial transferase hexapeptide (six repeats) M478_3221 PF01488 Shikimate / quinate 5-dehydrogenase M478_3221 PF18317 Shikimate 5'-dehydrogenase C-terminal domain M478_3221 PF08501 Shikimate dehydrogenase substrate binding domain M478_3222 PF01300 Telomere recombination M478_3223 PF01396 Topoisomerase DNA binding C4 zinc finger M478_3224 PF04361 Protein of unknown function (DUF494) M478_3225 PF02481 DNA recombination-mediator protein A M478_3225 PF17782 DprA winged helix domain M478_3226 PF01327 Polypeptide deformylase M478_3227 PF02911 Formyl transferase, C-terminal domain M478_3227 PF00551 Formyl transferase M478_3228 PF01189 16S rRNA methyltransferase RsmB/F M478_3228 PF01029 NusB family M478_3229 PF02080 TrkA-C domain M478_3229 PF02254 TrkA-N domain M478_323 PF00474 Sodium:solute symporter family M478_3230 PF01741 Large-conductance mechanosensitive channel, MscL M478_3231 PF03889 Alternative ribosome-rescue factor A M478_3232 PF13411 MerR HTH family regulatory protein M478_3233 PF01196 Ribosomal protein L17 M478_3234 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain M478_3234 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain M478_3234 PF01000 RNA polymerase Rpb3/RpoA insert domain M478_3235 PF01479 S4 domain M478_3235 PF00163 Ribosomal protein S4/S9 N-terminal domain M478_3236 PF00411 Ribosomal protein S11 M478_3237 PF00416 Ribosomal protein S13/S18 M478_3238 PF00444 Ribosomal protein L36 M478_3239 PF00344 SecY translocase M478_324 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain M478_324 PF07992 Pyridine nucleotide-disulphide oxidoreductase M478_3240 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A M478_3241 PF00327 Ribosomal protein L30p/L7e M478_3242 PF03719 Ribosomal protein S5, C-terminal domain M478_3242 PF00333 Ribosomal protein S5, N-terminal domain M478_3243 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast M478_3244 PF00347 Ribosomal protein L6 M478_3245 PF00410 Ribosomal protein S8 M478_3246 PF00253 Ribosomal protein S14p/S29e M478_3247 PF00673 ribosomal L5P family C-terminus M478_3247 PF00281 Ribosomal protein L5 M478_3248 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 M478_3248 PF00467 KOW motif M478_3249 PF00238 Ribosomal protein L14p/L23e M478_325 PF00005 ABC transporter M478_325 PF02687 FtsX-like permease family M478_325 PF12704 MacB-like periplasmic core domain M478_3250 PF00366 Ribosomal protein S17 M478_3251 PF00831 Ribosomal L29 protein M478_3252 PF00252 Ribosomal protein L16p/L10e M478_3253 PF07650 KH domain M478_3253 PF00189 Ribosomal protein S3, C-terminal domain M478_3254 PF00237 Ribosomal protein L22p/L17e M478_3255 PF00203 Ribosomal protein S19 M478_3256 PF00181 Ribosomal Proteins L2, RNA binding domain M478_3256 PF03947 Ribosomal Proteins L2, C-terminal domain M478_3257 PF00276 Ribosomal protein L23 M478_3258 PF00573 Ribosomal protein L4/L1 family M478_3259 PF00297 Ribosomal protein L3 M478_326 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion M478_3260 PF00338 Ribosomal protein S10p/S20e M478_3261 PF00210 Ferritin-like domain M478_3262 PF04324 BFD-like [2Fe-2S] binding domain M478_3263 PF01797 Transposase IS200 like M478_3264 PF00009 Elongation factor Tu GTP binding domain M478_3264 PF03144 Elongation factor Tu domain 2 M478_3264 PF03143 Elongation factor Tu C-terminal domain M478_3265 PF00679 Elongation factor G C-terminus M478_3265 PF14492 Elongation Factor G, domain II M478_3265 PF03144 Elongation factor Tu domain 2 M478_3265 PF00009 Elongation factor Tu GTP binding domain M478_3265 PF03764 Elongation factor G, domain IV M478_3266 PF00177 Ribosomal protein S7p/S5e M478_3267 PF00164 Ribosomal protein S12/S23 M478_3268 PF04077 DsrH like protein M478_3269 PF02635 DsrE/DsrF-like family M478_327 PF00486 Transcriptional regulatory protein, C terminal M478_327 PF00072 Response regulator receiver domain M478_3270 PF02635 DsrE/DsrF-like family M478_3271 PF13309 HTH domain M478_3271 PF08348 YheO-like PAS domain M478_3272 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase M478_3272 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase M478_3273 PF04102 SlyX M478_3274 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase M478_3275 PF09526 Probable metal-binding protein (DUF2387) M478_3276 PF00999 Sodium/hydrogen exchanger family M478_3276 PF02254 TrkA-N domain M478_3277 PF02525 Flavodoxin-like fold M478_3278 PF00005 ABC transporter M478_3278 PF12848 ABC transporter M478_3279 PF12848 ABC transporter M478_3279 PF00005 ABC transporter M478_328 PF16527 Two-component sensor protein CpxA, periplasmic domain M478_328 PF00672 HAMP domain M478_328 PF00512 His Kinase A (phospho-acceptor) domain M478_328 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M478_3280 PF00535 Glycosyl transferase family 2 M478_3282 PF02668 Taurine catabolism dioxygenase TauD, TfdA family M478_3283 PF00528 Binding-protein-dependent transport system inner membrane component M478_3284 PF00005 ABC transporter M478_3285 PF04069 Substrate binding domain of ABC-type glycine betaine transport system M478_3286 PF01810 LysE type translocator M478_3287 PF00561 alpha/beta hydrolase fold M478_3288 PF06794 Uncharacterised protein family (UPF0270) M478_3289 PF00485 Phosphoribulokinase / Uridine kinase family M478_3291 PF02566 OsmC-like protein M478_3292 PF00027 Cyclic nucleotide-binding domain M478_3292 PF13545 Crp-like helix-turn-helix domain M478_3293 PF12805 FUSC-like inner membrane protein yccS M478_3294 PF00202 Aminotransferase class-III M478_3295 PF00117 Glutamine amidotransferase class-I M478_3296 PF05872 Bacterial protein of unknown function (DUF853) M478_3297 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD M478_3298 PF11975 Family 4 glycosyl hydrolase C-terminal domain M478_3298 PF02056 Family 4 glycosyl hydrolase M478_3299 PF00356 Bacterial regulatory proteins, lacI family M478_33 PF13603 Leucyl-tRNA synthetase, Domain 2 M478_33 PF00133 tRNA synthetases class I (I, L, M and V) M478_33 PF08264 Anticodon-binding domain of tRNA M478_330 PF01797 Transposase IS200 like M478_3301 PF07690 Major Facilitator Superfamily M478_3302 PF07969 Amidohydrolase family M478_3303 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain M478_3303 PF07992 Pyridine nucleotide-disulphide oxidoreductase M478_3303 PF01077 Nitrite and sulphite reductase 4Fe-4S domain M478_3303 PF18267 Rubredoxin NAD+ reductase C-terminal domain M478_3303 PF04324 BFD-like [2Fe-2S] binding domain M478_3304 PF13806 Rieske-like [2Fe-2S] domain M478_3305 PF01226 Formate/nitrite transporter M478_3306 PF14824 Sirohaem biosynthesis protein central M478_3306 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases M478_3306 PF10414 Sirohaem synthase dimerisation region M478_3307 PF00579 tRNA synthetases class I (W and Y) M478_3308 PF13419 Haloacid dehalogenase-like hydrolase M478_3309 PF00834 Ribulose-phosphate 3 epimerase family M478_331 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 M478_3310 PF02086 D12 class N6 adenine-specific DNA methyltransferase M478_3311 PF05036 Sporulation related domain M478_3312 PF01761 3-dehydroquinate synthase M478_3313 PF01202 Shikimate kinase M478_3314 PF00263 Bacterial type II and III secretion system protein M478_3314 PF03958 Bacterial type II/III secretion system short domain M478_3319 PF00905 Penicillin binding protein transpeptidase domain M478_3319 PF00912 Transglycosylase M478_3319 PF17092 Penicillin-binding protein OB-like domain M478_332 PF00391 PEP-utilising enzyme, mobile domain M478_332 PF05524 PEP-utilising enzyme, N-terminal M478_332 PF02896 PEP-utilising enzyme, TIM barrel domain M478_3320 PF00293 NUDIX domain M478_3322 PF07095 Intracellular growth attenuator protein IgaA M478_3323 PF13419 Haloacid dehalogenase-like hydrolase M478_3324 PF01479 S4 domain M478_3325 PF01430 Hsp33 protein M478_3326 PF01293 Phosphoenolpyruvate carboxykinase M478_3327 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M478_3327 PF00512 His Kinase A (phospho-acceptor) domain M478_3327 PF00672 HAMP domain M478_3328 PF00486 Transcriptional regulatory protein, C terminal M478_3328 PF00072 Response regulator receiver domain M478_3329 PF01272 Transcription elongation factor, GreA/GreB, C-term M478_3329 PF03449 Transcription elongation factor, N-terminal M478_333 PF00381 PTS HPr component phosphorylation site M478_3330 PF00575 S1 RNA binding domain M478_3330 PF09371 Tex-like protein N-terminal domain M478_3330 PF16921 Tex protein YqgF-like domain M478_3330 PF17674 HHH domain M478_3331 PF04023 FeoA domain M478_3332 PF17910 FeoB cytosolic helical domain M478_3332 PF07670 Nucleoside recognition M478_3332 PF02421 Ferrous iron transport protein B M478_3332 PF07664 Ferrous iron transport protein B C terminus M478_3333 PF09012 FeoC like transcriptional regulator M478_3334 PF07338 Protein of unknown function (DUF1471) M478_3335 PF00561 alpha/beta hydrolase fold M478_3336 PF00156 Phosphoribosyl transferase domain M478_3337 PF01106 NifU-like domain M478_3337 PF01521 Iron-sulphur cluster biosynthesis M478_3338 PF02446 4-alpha-glucanotransferase M478_3339 PF00343 Carbohydrate phosphorylase M478_334 PF00291 Pyridoxal-phosphate dependent enzyme M478_3340 PF00343 Carbohydrate phosphorylase M478_3341 PF00196 Bacterial regulatory proteins, luxR family M478_3341 PF17874 MalT-like TPR region M478_3342 PF00581 Rhodanese-like domain M478_3343 PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease M478_3343 PF01694 Rhomboid family M478_3344 PF08220 DeoR-like helix-turn-helix domain M478_3344 PF00455 DeoR C terminal sensor domain M478_3346 PF13276 HTH-like domain M478_3346 PF00665 Integrase core domain M478_3346 PF13333 Integrase core domain M478_3349 PF01266 FAD dependent oxidoreductase M478_3349 PF16901 C-terminal domain of alpha-glycerophosphate oxidase M478_3350 PF00343 Carbohydrate phosphorylase M478_3351 PF00534 Glycosyl transferases group 1 M478_3351 PF08323 Starch synthase catalytic domain M478_3352 PF00483 Nucleotidyl transferase M478_3353 PF18390 Glycogen debranching enzyme C-terminal domain M478_3353 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) M478_3353 PF00128 Alpha amylase, catalytic domain M478_3354 PF00128 Alpha amylase, catalytic domain M478_3354 PF02806 Alpha amylase, C-terminal all-beta domain M478_3354 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) M478_3355 PF06580 Histidine kinase M478_3355 PF07694 5TMR of 5TMR-LYT M478_3356 PF02369 Bacterial Ig-like domain (group 1) M478_3356 PF11924 Inverse autotransporter, beta-domain M478_3356 PF07979 Intimin C-type lectin domain M478_3356 PF09134 Invasin, domain 3 M478_336 PF04354 ZipA, C-terminal FtsZ-binding domain M478_3361 PF02774 Semialdehyde dehydrogenase, dimerisation domain M478_3361 PF01118 Semialdehyde dehydrogenase, NAD binding domain M478_3362 PF01914 MarC family integral membrane protein M478_3366 PF01202 Shikimate kinase M478_3367 PF02447 GntP family permease M478_3368 PF00356 Bacterial regulatory proteins, lacI family M478_3368 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family M478_3369 PF17954 Quercetinase C-terminal cupin domain M478_3369 PF02678 Pirin M478_337 PF03119 NAD-dependent DNA ligase C4 zinc finger domain M478_337 PF01653 NAD-dependent DNA ligase adenylation domain M478_337 PF03120 NAD-dependent DNA ligase OB-fold domain M478_337 PF12826 Helix-hairpin-helix motif M478_337 PF00533 BRCA1 C Terminus (BRCT) domain M478_3371 PF00072 Response regulator receiver domain M478_3371 PF00486 Transcriptional regulatory protein, C terminal M478_3373 PF01116 Fructose-bisphosphate aldolase class-II M478_3375 PF13407 Periplasmic binding protein domain M478_3376 PF02653 Branched-chain amino acid transport system / permease component M478_3377 PF00005 ABC transporter M478_3378 PF00072 Response regulator receiver domain M478_3378 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M478_3378 PF13188 PAS domain M478_3378 PF00512 His Kinase A (phospho-acceptor) domain M478_3378 PF08448 PAS fold M478_338 PF12843 Putative quorum-sensing-regulated virulence factor M478_3380 PF01384 Phosphate transporter family M478_3381 PF01797 Transposase IS200 like M478_3382 PF10625 Universal stress protein B (UspB) M478_3383 PF00582 Universal stress protein family M478_3384 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain M478_3384 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase M478_3385 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) M478_3385 PF00413 Matrixin M478_3385 PF08548 Peptidase M10 serralysin C terminal M478_3386 PF04445 Putative SAM-dependent methyltransferase M478_3387 PF01432 Peptidase family M3 M478_3388 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ M478_3389 PF07992 Pyridine nucleotide-disulphide oxidoreductase M478_3389 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain M478_3390 PF05651 Putative sugar diacid recognition M478_3390 PF13556 PucR C-terminal helix-turn-helix domain M478_3390 PF17853 GGDEF-like domain M478_3391 PF02447 GntP family permease M478_3392 PF02595 Glycerate kinase family M478_3397 PF03631 Virulence factor BrkB M478_3398 PF05170 AsmA family M478_3399 PF02611 CDP-diacylglycerol pyrophosphatase M478_34 PF07295 Zinc-ribbon containing domain M478_3400 PF00563 EAL domain M478_3401 PF01361 Tautomerase enzyme M478_3402 PF00294 pfkB family carbohydrate kinase M478_3403 PF00675 Insulinase (Peptidase family M16) M478_3403 PF05193 Peptidase M16 inactive domain M478_3405 PF00375 Sodium:dicarboxylate symporter family M478_3407 PF06917 Periplasmic pectate lyase M478_3408 PF06178 Oligogalacturonate-specific porin protein (KdgM) M478_3409 PF00672 HAMP domain M478_3409 PF00990 Diguanylate cyclase, GGDEF domain M478_3409 PF17154 Gammaproteobacterial periplasmic sensor domain M478_3409 PF00563 EAL domain M478_3410 PF01270 Glycosyl hydrolases family 8 M478_3411 PF00005 ABC transporter M478_3411 PF08352 Oligopeptide/dipeptide transporter, C-terminal region M478_3412 PF08352 Oligopeptide/dipeptide transporter, C-terminal region M478_3412 PF00005 ABC transporter M478_3413 PF00528 Binding-protein-dependent transport system inner membrane component M478_3413 PF12911 N-terminal TM domain of oligopeptide transport permease C M478_3414 PF00528 Binding-protein-dependent transport system inner membrane component M478_3415 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle M478_3417 PF17287 POTRA domain M478_3417 PF08479 POTRA domain, ShlB-type M478_3417 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB M478_3418 PF13332 Hemagglutinin repeat M478_3418 PF05860 haemagglutination activity domain M478_3418 PF05594 Haemagluttinin repeat M478_3418 PF04829 Pre-toxin domain with VENN motif M478_3421 PF07690 Major Facilitator Superfamily M478_3422 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M478_3422 PF07730 Histidine kinase M478_3422 PF05231 MASE1 M478_3423 PF01695 IstB-like ATP binding protein M478_3428 PF00474 Sodium:solute symporter family M478_3429 PF04341 Protein of unknown function, DUF485 M478_3430 PF13193 AMP-binding enzyme C-terminal domain M478_3430 PF00501 AMP-binding enzyme M478_3430 PF16177 Acetyl-coenzyme A synthetase N-terminus M478_3431 PF00375 Sodium:dicarboxylate symporter family M478_3432 PF00196 Bacterial regulatory proteins, luxR family M478_3432 PF00072 Response regulator receiver domain M478_3433 PF00672 HAMP domain M478_3433 PF00072 Response regulator receiver domain M478_3433 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M478_3433 PF01627 Hpt domain M478_3433 PF00512 His Kinase A (phospho-acceptor) domain M478_3433 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) M478_3437 PF14525 AraC-binding-like domain M478_3437 PF12833 Helix-turn-helix domain M478_344 PF01797 Transposase IS200 like M478_3445 PF00771 FHIPEP family M478_3446 PF18269 T3SS EscN ATPase C-terminal domain M478_3446 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain M478_3449 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term M478_345 PF00749 tRNA synthetases class I (E and Q), catalytic domain M478_3450 PF00813 FliP family M478_3451 PF01313 Bacterial export proteins, family 3 M478_3452 PF01311 Bacterial export proteins, family 1 M478_3453 PF01312 FlhB HrpN YscU SpaS Family M478_3454 PF04143 Sulphur transport M478_3455 PF01206 Sulfurtransferase TusA M478_3456 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M478_3456 PF03466 LysR substrate binding domain M478_3457 PF03222 Tryptophan/tyrosine permease family M478_3458 PF01053 Cys/Met metabolism PLP-dependent enzyme M478_3459 PF00005 ABC transporter M478_3460 PF01032 FecCD transport family M478_3461 PF01497 Periplasmic binding protein M478_3462 PF05171 Haemin-degrading HemS.ChuX domain M478_3463 PF07715 TonB-dependent Receptor Plug Domain M478_3463 PF00593 TonB dependent receptor M478_3464 PF13460 NAD(P)H-binding M478_3465 PF06228 Haem utilisation ChuX/HutX M478_3466 PF04055 Radical SAM superfamily M478_3470 PF11202 Phosphoribosyl transferase (PRTase) M478_3470 PF15608 PELOTA RNA binding domain M478_3474 PF02342 TerD domain M478_3475 PF02342 TerD domain M478_3476 PF05099 Tellurite resistance protein TerB M478_3477 PF03741 Integral membrane protein TerC family M478_3478 PF02342 TerD domain M478_3479 PF02342 TerD domain M478_3481 PF13954 PapC N-terminal domain M478_3481 PF00577 Outer membrane usher protein M478_3481 PF13953 PapC C-terminal domain M478_3482 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain M478_3485 PF01565 FAD binding domain M478_3485 PF08031 Berberine and berberine like M478_3486 PF12951 Passenger-associated-transport-repeat M478_3487 PF04345 Chorismate lyase M478_3488 PF01040 UbiA prenyltransferase family M478_3489 PF01553 Acyltransferase M478_349 PF07670 Nucleoside recognition M478_349 PF07662 Na+ dependent nucleoside transporter C-terminus M478_349 PF01773 Na+ dependent nucleoside transporter N-terminus M478_3490 PF01219 Prokaryotic diacylglycerol kinase M478_3491 PF00717 Peptidase S24-like M478_3491 PF01726 LexA DNA binding domain M478_3492 PF01475 Ferric uptake regulator family M478_3493 PF01207 Dihydrouridine synthase (Dus) M478_3494 PF09583 Phage shock protein G (Phageshock_PspG) M478_3495 PF00107 Zinc-binding dehydrogenase M478_3495 PF08240 Alcohol dehydrogenase GroES-like domain M478_3496 PF00772 DnaB-like helicase N terminal domain M478_3496 PF03796 DnaB-like helicase C terminal domain M478_3497 PF00842 Alanine racemase, C-terminal domain M478_3497 PF01168 Alanine racemase, N-terminal domain M478_3498 PF00155 Aminotransferase class I and II M478_3499 PF04237 YjbR M478_35 PF00005 ABC transporter M478_350 PF01566 Natural resistance-associated macrophage protein M478_3500 PF17755 UvrA DNA-binding domain M478_3500 PF17760 UvrA interaction domain M478_3500 PF00005 ABC transporter M478_3501 PF00436 Single-strand binding protein family M478_3502 PF05336 L-rhamnose mutarotase M478_3503 PF00465 Iron-containing alcohol dehydrogenase M478_3504 PF00596 Class II Aldolase and Adducin N-terminal domain M478_3505 PF06134 L-rhamnose isomerase (RhaA) M478_3506 PF00370 FGGY family of carbohydrate kinases, N-terminal domain M478_3506 PF02782 FGGY family of carbohydrate kinases, C-terminal domain M478_3509 PF02311 AraC-like ligand binding domain M478_3509 PF12833 Helix-turn-helix domain M478_3510 PF12833 Helix-turn-helix domain M478_3510 PF02311 AraC-like ligand binding domain M478_3511 PF06379 L-rhamnose-proton symport protein (RhaT) M478_3518 PF07992 Pyridine nucleotide-disulphide oxidoreductase M478_3518 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster M478_3518 PF13247 4Fe-4S dicluster domain M478_3519 PF13247 4Fe-4S dicluster domain M478_3519 PF12800 4Fe-4S binding domain M478_352 PF00248 Aldo/keto reductase family M478_3520 PF04879 Molybdopterin oxidoreductase Fe4S4 domain M478_3520 PF00384 Molybdopterin oxidoreductase M478_3520 PF01568 Molydopterin dinucleotide binding domain M478_3521 PF11412 Disulphide bond corrector protein DsbC M478_3521 PF02683 Cytochrome C biogenesis protein transmembrane region M478_3522 PF03091 CutA1 divalent ion tolerance protein M478_3523 PF03605 Anaerobic c4-dicarboxylate membrane transporter M478_3524 PF00206 Lyase M478_3524 PF10415 Fumarase C C-terminus M478_3525 PF04186 FxsA cytoplasmic membrane protein M478_3526 PF00166 Chaperonin 10 Kd subunit M478_3527 PF00118 TCP-1/cpn60 chaperonin family M478_3528 PF13698 Domain of unknown function (DUF4156) M478_3529 PF04055 Radical SAM superfamily M478_353 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M478_353 PF03466 LysR substrate binding domain M478_3530 PF09285 Elongation factor P, C-terminal M478_3530 PF01132 Elongation factor P (EF-P) OB domain M478_3530 PF08207 Elongation factor P (EF-P) KOW-like domain M478_3531 PF00893 Small Multidrug Resistance protein M478_3532 PF02313 Fumarate reductase subunit D M478_3533 PF02300 Fumarate reductase subunit C M478_3534 PF13085 2Fe-2S iron-sulfur cluster binding domain M478_3534 PF13183 4Fe-4S dicluster domain M478_3535 PF02910 Fumarate reductase flavoprotein C-term M478_3535 PF00890 FAD binding domain M478_3536 PF00152 tRNA synthetases class II (D, K and N) M478_3537 PF12794 Mechanosensitive ion channel inner membrane domain 1 M478_3537 PF12795 Mechanosensitive ion channel porin domain M478_3537 PF00924 Mechanosensitive ion channel M478_3538 PF02666 Phosphatidylserine decarboxylase M478_3539 PF03193 RsgA GTPase M478_3540 PF00929 Exonuclease M478_3544 PF08331 Domain of unknown function (DUF1730) M478_3545 PF01256 Carbohydrate kinase M478_3545 PF03853 YjeF-related protein N-terminus M478_3546 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE M478_3547 PF01520 N-acetylmuramoyl-L-alanine amidase M478_3548 PF08676 MutL C terminal dimerisation domain M478_3548 PF01119 DNA mismatch repair protein, C-terminal domain M478_355 PF02685 Glucokinase M478_3550 PF17209 Hfq protein M478_3551 PF16360 GTP-binding GTPase Middle Region M478_3551 PF01926 50S ribosome-binding GTPase M478_3551 PF13167 GTP-binding GTPase N-terminal M478_3552 PF01145 SPFH domain / Band 7 family M478_3552 PF12221 Bacterial membrane protein N terminal M478_3553 PF01145 SPFH domain / Band 7 family M478_3554 PF09838 Uncharacterized protein conserved in bacteria (DUF2065) M478_3555 PF00709 Adenylosuccinate synthetase M478_3556 PF02082 Transcriptional regulator M478_3557 PF00773 RNB domain M478_3557 PF00575 S1 RNA binding domain M478_3557 PF08206 Ribonuclease B OB domain M478_3557 PF08461 Ribonuclease R winged-helix domain M478_3557 PF17876 Cold shock domain M478_3558 PF00588 SpoU rRNA Methylase family M478_3558 PF08032 RNA 2'-O ribose methyltransferase substrate binding M478_3559 PF02770 Acyl-CoA dehydrogenase, middle domain M478_3559 PF00441 Acyl-CoA dehydrogenase, C-terminal domain M478_3559 PF18158 Adaptive response protein AidB N-terminal domain M478_356 PF07350 Protein of unknown function (DUF1479) M478_3560 PF07338 Protein of unknown function (DUF1471) M478_3562 PF01695 IstB-like ATP binding protein M478_3563 PF00665 Integrase core domain M478_3563 PF02796 Helix-turn-helix domain of resolvase M478_3564 PF00326 Prolyl oligopeptidase family M478_3566 PF01250 Ribosomal protein S6 M478_3567 PF01084 Ribosomal protein S18 M478_3568 PF01281 Ribosomal protein L9, N-terminal domain M478_3568 PF03948 Ribosomal protein L9, C-terminal domain M478_3569 PF01797 Transposase IS200 like M478_357 PF00155 Aminotransferase class I and II M478_3571 PF04225 Opacity-associated protein A LysM-like domain M478_3571 PF08525 Opacity-associated protein A N-terminal motif M478_3572 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase M478_3572 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase M478_3573 PF01814 Hemerythrin HHE cation binding domain M478_3573 PF04405 Domain of Unknown function (DUF542) M478_3574 PF02872 5'-nucleotidase, C-terminal domain M478_3574 PF00149 Calcineurin-like phosphoesterase M478_3575 PF00459 Inositol monophosphatase family M478_3576 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) M478_3577 PF06526 Protein of unknown function (DUF1107) M478_3578 PF01595 Cyclin M transmembrane N-terminal domain M478_3578 PF03471 Transporter associated domain M478_3578 PF00571 CBS domain M478_3579 PF01625 Peptide methionine sulfoxide reductase M478_358 PF01292 Prokaryotic cytochrome b561 M478_3580 PF01103 Surface antigen M478_3580 PF07244 Surface antigen variable number repeat M478_3580 PF17243 POTRA domain TamA domain 1 M478_3581 PF04357 TamB, inner membrane protein subunit of TAM complex M478_3582 PF06094 Gamma-glutamyl cyclotransferase, AIG2-like M478_3583 PF00719 Inorganic pyrophosphatase M478_3584 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain M478_3585 PF02875 Mur ligase family, glutamate ligase domain M478_3585 PF01225 Mur ligase family, catalytic domain M478_3585 PF08245 Mur ligase middle domain M478_3587 PF01316 Arginine repressor, DNA binding domain M478_3587 PF02863 Arginine repressor, C-terminal domain M478_3588 PF00056 lactate/malate dehydrogenase, NAD binding domain M478_3588 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain M478_3589 PF13693 Winged helix-turn-helix DNA-binding M478_3591 PF00348 Polyprenyl synthetase M478_3592 PF00829 Ribosomal prokaryotic L21 protein M478_3593 PF01016 Ribosomal L27 protein M478_3594 PF00892 EamA-like transporter family M478_3595 PF01018 GTP1/OBG M478_3595 PF01926 50S ribosome-binding GTPase M478_3596 PF00512 His Kinase A (phospho-acceptor) domain M478_3596 PF00672 HAMP domain M478_3596 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M478_3597 PF00486 Transcriptional regulatory protein, C terminal M478_3597 PF00072 Response regulator receiver domain M478_3598 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family M478_3599 PF01272 Transcription elongation factor, GreA/GreB, C-term M478_3599 PF03449 Transcription elongation factor, N-terminal M478_36 PF00528 Binding-protein-dependent transport system inner membrane component M478_360 PF03783 Curli production assembly/transport component CsgG M478_3600 PF01985 CRS1 / YhbY (CRM) domain M478_3601 PF01728 FtsJ-like methyltransferase M478_3602 PF01434 Peptidase family M41 M478_3602 PF06480 FtsH Extracellular M478_3602 PF17862 AAA+ lid domain M478_3602 PF00004 ATPase family associated with various cellular activities (AAA) M478_3603 PF00809 Pterin binding enzyme M478_3604 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I M478_3604 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain M478_3604 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II M478_3604 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III M478_3605 PF03840 Preprotein translocase SecG subunit M478_3608 PF02576 RimP N-terminal domain M478_3608 PF17384 RimP C-terminal SH3 domain M478_3609 PF13184 NusA-like KH domain M478_3609 PF00575 S1 RNA binding domain M478_3609 PF08529 NusA N-terminal domain M478_3610 PF00009 Elongation factor Tu GTP binding domain M478_3610 PF08364 Bacterial translation initiation factor IF-2 associated region M478_3610 PF11987 Translation-initiation factor 2 M478_3610 PF03144 Elongation factor Tu domain 2 M478_3610 PF04760 Translation initiation factor IF-2, N-terminal region M478_3611 PF02033 Ribosome-binding factor A M478_3612 PF16198 tRNA pseudouridylate synthase B C-terminal domain M478_3612 PF01509 TruB family pseudouridylate synthase (N terminal domain) M478_3612 PF09157 Pseudouridine synthase II TruB, C-terminal M478_3613 PF00312 Ribosomal protein S15 M478_3615 PF13276 HTH-like domain M478_3615 PF13333 Integrase core domain M478_3615 PF00665 Integrase core domain M478_3616 PF00575 S1 RNA binding domain M478_3616 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain M478_3616 PF00013 KH domain M478_3616 PF03725 3' exoribonuclease family, domain 2 M478_3616 PF01138 3' exoribonuclease family, domain 1 M478_3617 PF13181 Tetratricopeptide repeat M478_3617 PF07719 Tetratricopeptide repeat M478_3618 PF00271 Helicase conserved C-terminal domain M478_3618 PF03880 DbpA RNA binding domain M478_3618 PF00270 DEAD/DEAH box helicase M478_3618 PF12343 Cold shock protein DEAD box A M478_362 PF05643 Putative bacterial lipoprotein (DUF799) M478_3620 PF01381 Helix-turn-helix M478_3621 PF00296 Luciferase-like monooxygenase M478_3623 PF00529 HlyD membrane-fusion protein of T1SS M478_3623 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion M478_3624 PF00873 AcrB/AcrD/AcrF family M478_3625 PF02321 Outer membrane efflux protein M478_3625 PF08139 Prokaryotic membrane lipoprotein lipid attachment site M478_3629 PF13508 Acetyltransferase (GNAT) domain M478_3630 PF01541 GIY-YIG catalytic domain M478_3633 PF13416 Bacterial extracellular solute-binding protein M478_3635 PF00528 Binding-protein-dependent transport system inner membrane component M478_3636 PF17912 MalK OB fold domain M478_3636 PF00005 ABC transporter M478_3636 PF03459 TOBE domain M478_3639 PF13460 NAD(P)H-binding M478_364 PF02613 Nitrate reductase delta subunit M478_3640 PF12706 Beta-lactamase superfamily domain M478_3642 PF07969 Amidohydrolase family M478_3643 PF00005 ABC transporter M478_3644 PF00005 ABC transporter M478_3645 PF06007 Phosphonate metabolism protein PhnJ M478_3646 PF05861 Bacterial phosphonate metabolism protein (PhnI) M478_3647 PF05845 Bacterial phosphonate metabolism protein (PhnH) M478_3648 PF06754 Phosphonate metabolism protein PhnG M478_3649 PF00392 Bacterial regulatory proteins, gntR family M478_3649 PF07702 UTRA domain M478_365 PF04976 DMSO reductase anchor subunit (DmsC) M478_3652 PF03477 ATP cone domain M478_3652 PF13597 Anaerobic ribonucleoside-triphosphate reductase M478_3653 PF08352 Oligopeptide/dipeptide transporter, C-terminal region M478_3653 PF00005 ABC transporter M478_3654 PF00005 ABC transporter M478_3654 PF08352 Oligopeptide/dipeptide transporter, C-terminal region M478_3655 PF00528 Binding-protein-dependent transport system inner membrane component M478_3655 PF12911 N-terminal TM domain of oligopeptide transport permease C M478_3656 PF00528 Binding-protein-dependent transport system inner membrane component M478_3659 PF04074 YhcH/YjgK/YiaL M478_366 PF13247 4Fe-4S dicluster domain M478_366 PF12800 4Fe-4S binding domain M478_3660 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain M478_3660 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain M478_3661 PF06877 Regulator of ribonuclease activity B M478_3662 PF00583 Acetyltransferase (GNAT) family M478_3663 PF08264 Anticodon-binding domain of tRNA M478_3663 PF10458 Valyl tRNA synthetase tRNA binding arm M478_3663 PF00133 tRNA synthetases class I (I, L, M and V) M478_3664 PF04364 DNA polymerase III chi subunit, HolC M478_3665 PF00883 Cytosol aminopeptidase family, catalytic domain M478_3665 PF02789 Cytosol aminopeptidase family, N-terminal domain M478_3666 PF03739 Lipopolysaccharide export system permease LptF/LptG M478_3667 PF03739 Lipopolysaccharide export system permease LptF/LptG M478_3669 PF13356 Arm DNA-binding domain M478_3669 PF00589 Phage integrase family M478_367 PF04879 Molybdopterin oxidoreductase Fe4S4 domain M478_367 PF01568 Molydopterin dinucleotide binding domain M478_367 PF00384 Molybdopterin oxidoreductase M478_3671 PF08676 MutL C terminal dimerisation domain M478_3671 PF01119 DNA mismatch repair protein, C-terminal domain M478_3672 PF01695 IstB-like ATP binding protein M478_3673 PF02796 Helix-turn-helix domain of resolvase M478_3673 PF00665 Integrase core domain M478_3674 PF01797 Transposase IS200 like M478_3675 PF03884 DNA gyrase inhibitor YacG M478_3676 PF07072 Cell division protein M478_3677 PF01121 Dephospho-CoA kinase M478_3678 PF00478 IMP dehydrogenase / GMP reductase domain M478_3679 PF00482 Type II secretion system (T2SS), protein F M478_3680 PF00437 Type II/IV secretion system protein M478_3680 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain M478_3681 PF07963 Prokaryotic N-terminal methylation motif M478_3682 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain M478_3682 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain M478_3683 PF01510 N-acetylmuramoyl-L-alanine amidase M478_3684 PF17113 Regulatory signalling modulator protein AmpE M478_3685 PF00324 Amino acid permease M478_3686 PF07729 FCD domain M478_3686 PF00392 Bacterial regulatory proteins, gntR family M478_3687 PF00456 Transketolase, thiamine diphosphate binding domain M478_3687 PF17831 Pyruvate dehydrogenase E1 component middle domain M478_3688 PF00364 Biotin-requiring enzyme M478_3688 PF02817 e3 binding domain M478_3688 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) M478_3689 PF07992 Pyridine nucleotide-disulphide oxidoreductase M478_3689 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain M478_369 PF05638 Type VI secretion system effector, Hcp M478_3690 PF01797 Transposase IS200 like M478_3691 PF00330 Aconitase family (aconitate hydratase) M478_3691 PF11791 Aconitate B N-terminal domain M478_3691 PF06434 Aconitate hydratase 2 N-terminus M478_3692 PF06062 Uncharacterised protein family (UPF0231) M478_3693 PF00892 EamA-like transporter family M478_3694 PF02675 S-adenosylmethionine decarboxylase M478_3695 PF17284 Spermidine synthase tetramerisation domain M478_3696 PF09691 Type II secretion system pilotin lipoprotein (PulS_OutS) M478_3697 PF07732 Multicopper oxidase M478_3697 PF10518 TAT (twin-arginine translocation) pathway signal sequence M478_3697 PF07731 Multicopper oxidase M478_3697 PF00394 Multicopper oxidase M478_3698 PF00156 Phosphoribosyl transferase domain M478_3699 PF00484 Carbonic anhydrase M478_37 PF00528 Binding-protein-dependent transport system inner membrane component M478_3700 PF00005 ABC transporter M478_3701 PF01061 ABC-2 type transporter M478_3703 PF01522 Polysaccharide deacetylase M478_3704 PF02261 Aspartate decarboxylase M478_3705 PF02569 Pantoate-beta-alanine ligase M478_3706 PF02548 Ketopantoate hydroxymethyltransferase M478_3707 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) M478_3708 PF01743 Poly A polymerase head domain M478_3708 PF12627 Probable RNA and SrmB- binding site of polymerase A M478_3708 PF12626 Polymerase A arginine-rich C-terminus M478_3709 PF00749 tRNA synthetases class I (E and Q), catalytic domain M478_371 PF00005 ABC transporter M478_3710 PF01258 Prokaryotic dksA/traR C4-type zinc finger M478_3711 PF03749 Sugar fermentation stimulation protein RE domain M478_3711 PF17746 SfsA N-terminal OB domain M478_3712 PF02834 LigT like Phosphoesterase M478_3713 PF00271 Helicase conserved C-terminal domain M478_3713 PF04408 Helicase associated domain (HA2) M478_3713 PF08482 ATP-dependent helicase C-terminal M478_3713 PF00270 DEAD/DEAH box helicase M478_3714 PF00912 Transglycosylase M478_3714 PF14812 Transmembrane domain of transglycosylase PBP1 at N-terminal M478_3714 PF00905 Penicillin binding protein transpeptidase domain M478_3714 PF14814 Bifunctional transglycosylase second domain M478_3715 PF00005 ABC transporter M478_3716 PF01497 Periplasmic binding protein M478_3717 PF01032 FecCD transport family M478_3718 PF00202 Aminotransferase class-III M478_3719 PF00654 Voltage gated chloride channel M478_372 PF00528 Binding-protein-dependent transport system inner membrane component M478_3720 PF01521 Iron-sulphur cluster biosynthesis M478_3721 PF03458 UPF0126 domain M478_3722 PF01497 Periplasmic binding protein M478_3723 PF01048 Phosphorylase superfamily M478_3724 PF01966 HD domain M478_3724 PF13286 Phosphohydrolase-associated domain M478_3725 PF00595 PDZ domain M478_3726 PF00072 Response regulator receiver domain M478_3726 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) M478_3726 PF01627 Hpt domain M478_3726 PF00512 His Kinase A (phospho-acceptor) domain M478_3726 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M478_3726 PF00672 HAMP domain M478_3727 PF04607 Region found in RelA / SpoT proteins M478_3727 PF02824 TGS domain M478_3727 PF13291 ACT domain M478_3728 PF03819 MazG nucleotide pyrophosphohydrolase domain M478_3729 PF00117 Glutamine amidotransferase class-I M478_3729 PF06418 CTP synthase N-terminus M478_3730 PF00113 Enolase, C-terminal TIM barrel domain M478_3730 PF03952 Enolase, N-terminal domain M478_3731 PF00080 Copper/zinc superoxide dismutase (SODC) M478_3732 PF04055 Radical SAM superfamily M478_3733 PF01242 6-pyruvoyl tetrahydropterin synthase M478_3734 PF00175 Oxidoreductase NAD-binding domain M478_3734 PF00258 Flavodoxin M478_3734 PF00667 FAD binding domain M478_3735 PF01077 Nitrite and sulphite reductase 4Fe-4S domain M478_3735 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain M478_3736 PF01507 Phosphoadenosine phosphosulfate reductase family M478_3737 PF01507 Phosphoadenosine phosphosulfate reductase family M478_374 PF13406 Transglycosylase SLT domain M478_3743 PF01507 Phosphoadenosine phosphosulfate reductase family M478_3744 PF00009 Elongation factor Tu GTP binding domain M478_3746 PF12084 Protein of unknown function (DUF3561) M478_3747 PF04977 Septum formation initiator M478_3748 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase M478_3749 PF02542 YgbB family M478_3750 PF01142 tRNA pseudouridine synthase D (TruD) M478_3751 PF01975 Survival protein SurE M478_3753 PF01551 Peptidase family M23 M478_3753 PF01476 LysM domain M478_3754 PF04542 Sigma-70 region 2 M478_3754 PF00140 Sigma-70 factor, region 1.2 M478_3754 PF04539 Sigma-70 region 3 M478_3754 PF04545 Sigma-70, region 4 M478_3755 PF00488 MutS domain V M478_3755 PF01624 MutS domain I M478_3755 PF05188 MutS domain II M478_3755 PF05192 MutS domain III M478_3755 PF05190 MutS family domain IV M478_3756 PF02502 Ribose/Galactose Isomerase M478_3757 PF08240 Alcohol dehydrogenase GroES-like domain M478_3757 PF00107 Zinc-binding dehydrogenase M478_3759 PF02733 Dak1 domain M478_3760 PF02734 DAK2 domain M478_3761 PF04198 Putative sugar-binding domain M478_3761 PF13936 Helix-turn-helix domain M478_3762 PF02040 Arsenical pump membrane protein M478_3763 PF01022 Bacterial regulatory protein, arsR family M478_3765 PF00497 Bacterial extracellular solute-binding proteins, family 3 M478_3766 PF03150 Di-haem cytochrome c peroxidase M478_3766 PF00034 Cytochrome c M478_3766 PF14376 Haem-binding domain M478_3768 PF00593 TonB dependent receptor M478_3768 PF07715 TonB-dependent Receptor Plug Domain M478_3770 PF00557 Metallopeptidase family M24 M478_3772 PF05681 Fumarate hydratase (Fumerase) M478_3772 PF05683 Fumarase C-terminus M478_3773 PF02782 FGGY family of carbohydrate kinases, C-terminal domain M478_3773 PF00370 FGGY family of carbohydrate kinases, N-terminal domain M478_3774 PF01261 Xylose isomerase-like TIM barrel M478_3775 PF02653 Branched-chain amino acid transport system / permease component M478_3776 PF02653 Branched-chain amino acid transport system / permease component M478_3777 PF00005 ABC transporter M478_3778 PF01797 Transposase IS200 like M478_3780 PF08220 DeoR-like helix-turn-helix domain M478_3780 PF00455 DeoR C terminal sensor domain M478_3781 PF00596 Class II Aldolase and Adducin N-terminal domain M478_3782 PF01568 Molydopterin dinucleotide binding domain M478_3782 PF00384 Molybdopterin oxidoreductase M478_3782 PF04879 Molybdopterin oxidoreductase Fe4S4 domain M478_3783 PF12800 4Fe-4S binding domain M478_3783 PF13247 4Fe-4S dicluster domain M478_3784 PF04976 DMSO reductase anchor subunit (DmsC) M478_3785 PF02613 Nitrate reductase delta subunit M478_3786 PF01292 Prokaryotic cytochrome b561 M478_3787 PF07361 Cytochrome b562 M478_3788 PF00141 Peroxidase M478_3791 PF00005 ABC transporter M478_3792 PF02653 Branched-chain amino acid transport system / permease component M478_3793 PF00456 Transketolase, thiamine diphosphate binding domain M478_3794 PF02780 Transketolase, C-terminal domain M478_3794 PF02779 Transketolase, pyrimidine binding domain M478_3795 PF02782 FGGY family of carbohydrate kinases, C-terminal domain M478_3795 PF00370 FGGY family of carbohydrate kinases, N-terminal domain M478_3798 PF07690 Major Facilitator Superfamily M478_3799 PF02464 Competence-damaged protein M478_38 PF00497 Bacterial extracellular solute-binding proteins, family 3 M478_3800 PF00154 recA bacterial DNA recombination protein M478_3801 PF02631 RecX family M478_3802 PF01411 tRNA synthetases class II (A) M478_3802 PF02272 DHHA1 domain M478_3802 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain M478_3803 PF02599 Global regulator protein family M478_3808 PF13419 Haloacid dehalogenase-like hydrolase M478_3809 PF09335 SNARE associated Golgi protein M478_3810 PF04262 Glutamate-cysteine ligase M478_3811 PF02664 S-Ribosylhomocysteinase (LuxS) M478_3812 PF01797 Transposase IS200 like M478_3813 PF01595 Cyclin M transmembrane N-terminal domain M478_3813 PF00571 CBS domain M478_3813 PF03471 Transporter associated domain M478_3814 PF01578 Cytochrome C assembly protein M478_3815 PF02881 SRP54-type protein, helical bundle domain M478_3815 PF02978 Signal peptide binding domain M478_3815 PF00448 SRP54-type protein, GTPase domain M478_3816 PF00886 Ribosomal protein S16 M478_3817 PF05239 PRC-barrel domain M478_3817 PF01782 RimM N-terminal domain M478_3818 PF01746 tRNA (Guanine-1)-methyltransferase M478_3819 PF01245 Ribosomal protein L19 M478_3820 PF01797 Transposase IS200 like M478_3821 PF04338 Protein of unknown function, DUF481 M478_3822 PF03605 Anaerobic c4-dicarboxylate membrane transporter M478_3823 PF03605 Anaerobic c4-dicarboxylate membrane transporter M478_3824 PF03605 Anaerobic c4-dicarboxylate membrane transporter M478_3825 PF00072 Response regulator receiver domain M478_3825 PF04397 LytTr DNA-binding domain M478_3826 PF00793 DAHP synthetase I family M478_3827 PF01817 Chorismate mutase type II M478_3827 PF02153 Prephenate dehydrogenase M478_3828 PF01817 Chorismate mutase type II M478_3828 PF00800 Prephenate dehydratase M478_3829 PF01695 IstB-like ATP binding protein M478_3832 PF00665 Integrase core domain M478_3832 PF02796 Helix-turn-helix domain of resolvase M478_3833 PF01817 Chorismate mutase type II M478_3833 PF00800 Prephenate dehydratase M478_3834 PF01797 Transposase IS200 like M478_3835 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein M478_3836 PF13525 Outer membrane lipoprotein M478_3837 PF01479 S4 domain M478_3837 PF00849 RNA pseudouridylate synthase M478_3839 PF10431 C-terminal, D2-small domain, of ClpB protein M478_3839 PF00004 ATPase family associated with various cellular activities (AAA) M478_3839 PF07724 AAA domain (Cdc48 subfamily) M478_3839 PF02861 Clp amino terminal domain, pathogenicity island component M478_3839 PF17871 AAA lid domain M478_384 PF07724 AAA domain (Cdc48 subfamily) M478_384 PF10431 C-terminal, D2-small domain, of ClpB protein M478_384 PF00004 ATPase family associated with various cellular activities (AAA) M478_384 PF17871 AAA lid domain M478_3846 PF10043 Predicted periplasmic lipoprotein (DUF2279) M478_3847 PF13091 PLD-like domain M478_3848 PF13607 Succinyl-CoA ligase like flavodoxin domain M478_3848 PF13380 CoA binding domain M478_3848 PF00583 Acetyltransferase (GNAT) family M478_385 PF16970 Type-1 fimbrial protein, A M478_3850 PF00085 Thioredoxin M478_3851 PF00588 SpoU rRNA Methylase family M478_3851 PF08032 RNA 2'-O ribose methyltransferase substrate binding M478_3852 PF07690 Major Facilitator Superfamily M478_3853 PF00529 HlyD membrane-fusion protein of T1SS M478_3853 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion M478_3854 PF01047 MarR family M478_3855 PF05437 Branched-chain amino acid transport protein (AzlD) M478_3856 PF03591 AzlC protein M478_3857 PF07690 Major Facilitator Superfamily M478_3859 PF01425 Amidase M478_386 PF02753 Pili assembly chaperone PapD, C-terminal domain M478_386 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain M478_3862 PF00497 Bacterial extracellular solute-binding proteins, family 3 M478_3863 PF00528 Binding-protein-dependent transport system inner membrane component M478_3865 PF00005 ABC transporter M478_3866 PF00266 Aminotransferase class-V M478_3867 PF01695 IstB-like ATP binding protein M478_387 PF13953 PapC C-terminal domain M478_387 PF00577 Outer membrane usher protein M478_387 PF13954 PapC N-terminal domain M478_3870 PF02796 Helix-turn-helix domain of resolvase M478_3870 PF00665 Integrase core domain M478_3871 PF00266 Aminotransferase class-V M478_3872 PF07687 Peptidase dimerisation domain M478_3872 PF01546 Peptidase family M20/M25/M40 M478_3873 PF08479 POTRA domain, ShlB-type M478_3873 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB M478_3874 PF05860 haemagglutination activity domain M478_3876 PF18071 HMW1C N-terminal M478_3876 PF18254 HMW1 domain 2 M478_3878 PF00441 Acyl-CoA dehydrogenase, C-terminal domain M478_3878 PF09317 Domain of unknown function (DUF1974) M478_3878 PF02771 Acyl-CoA dehydrogenase, N-terminal domain M478_3879 PF13580 SIS domain M478_388 PF00872 Transposase, Mutator family M478_3880 PF03734 L,D-transpeptidase catalytic domain M478_3881 PF13230 Glutamine amidotransferases class-II M478_3882 PF11973 NQRA C-terminal domain M478_3882 PF05896 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) M478_3883 PF03116 NQR2, RnfD, RnfE family M478_3884 PF04205 FMN-binding domain M478_3885 PF02508 Rnf-Nqr subunit, membrane protein M478_3886 PF02508 Rnf-Nqr subunit, membrane protein M478_3887 PF00111 2Fe-2S iron-sulfur cluster binding domain M478_3887 PF00970 Oxidoreductase FAD-binding domain M478_3887 PF00175 Oxidoreductase NAD-binding domain M478_3888 PF02424 ApbE family M478_389 PF13953 PapC C-terminal domain M478_389 PF13954 PapC N-terminal domain M478_389 PF00577 Outer membrane usher protein M478_3890 PF03009 Glycerophosphoryl diester phosphodiesterase family M478_3891 PF11799 impB/mucB/samB family C-terminal domain M478_3891 PF00817 impB/mucB/samB family M478_3891 PF11798 IMS family HHH motif M478_3892 PF01546 Peptidase family M20/M25/M40 M478_3892 PF07687 Peptidase dimerisation domain M478_3896 PF00156 Phosphoribosyl transferase domain M478_3898 PF07417 Sigma factor-binding transcriptional regulator Crl M478_3899 PF00696 Amino acid kinase family M478_3899 PF01472 PUA domain M478_39 PF00795 Carbon-nitrogen hydrolase M478_3900 PF00171 Aldehyde dehydrogenase family M478_3901 PF07238 PilZ domain M478_3901 PF07317 Flagellar regulator YcgR M478_3903 PF08241 Methyltransferase domain M478_3905 PF01202 Shikimate kinase M478_3906 PF06865 Pyrimidine/purine nucleoside phosphorylase M478_3907 PF04381 Putative exonuclease, RdgC M478_3908 PF00480 ROK family M478_3909 PF13476 AAA domain M478_3910 PF00149 Calcineurin-like phosphoesterase M478_3910 PF12320 Type 5 capsule protein repressor C-terminal domain M478_3911 PF00486 Transcriptional regulatory protein, C terminal M478_3911 PF00072 Response regulator receiver domain M478_3912 PF11808 Phosphate regulon sensor protein PhoR M478_3912 PF00989 PAS fold M478_3912 PF00512 His Kinase A (phospho-acceptor) domain M478_3912 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M478_3913 PF12849 PBP superfamily domain M478_3914 PF05525 Branched-chain amino acid transport protein M478_3915 PF01797 Transposase IS200 like M478_3916 PF00324 Amino acid permease M478_3917 PF00128 Alpha amylase, catalytic domain M478_3917 PF02903 Alpha amylase, N-terminal ig-like domain M478_3921 PF10417 C-terminal domain of 1-Cys peroxiredoxin M478_3921 PF00578 AhpC/TSA family M478_3922 PF04336 Acyl carrier protein phosphodiesterase M478_3923 PF02547 Queuosine biosynthesis protein M478_3924 PF01702 Queuine tRNA-ribosyltransferase M478_3925 PF02699 Preprotein translocase subunit M478_3926 PF02355 Protein export membrane protein M478_3926 PF13721 SecD export protein N-terminal TM region M478_3926 PF07549 SecD/SecF GG Motif M478_3927 PF02355 Protein export membrane protein M478_3927 PF07549 SecD/SecF GG Motif M478_3928 PF01797 Transposase IS200 like M478_3931 PF03477 ATP cone domain M478_3932 PF01872 RibD C-terminal domain M478_3932 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region M478_3933 PF00885 6,7-dimethyl-8-ribityllumazine synthase M478_3934 PF01029 NusB family M478_3935 PF00586 AIR synthase related protein, N-terminal domain M478_3935 PF02769 AIR synthase related protein, C-terminal domain M478_3936 PF04608 Phosphatidylglycerophosphatase A M478_3937 PF01797 Transposase IS200 like M478_3938 PF02780 Transketolase, C-terminal domain M478_3938 PF02779 Transketolase, pyrimidine binding domain M478_3938 PF13292 1-deoxy-D-xylulose-5-phosphate synthase M478_3939 PF00348 Polyprenyl synthetase M478_3940 PF02609 Exonuclease VII small subunit M478_3941 PF02926 THUMP domain M478_3941 PF02568 Thiamine biosynthesis protein (ThiI) M478_3942 PF01965 DJ-1/PfpI family M478_3943 PF08546 Ketopantoate reductase PanE/ApbA C terminal M478_3943 PF02558 Ketopantoate reductase PanE/ApbA M478_3944 PF04461 Protein of unknown function (DUF520) M478_3945 PF07690 Major Facilitator Superfamily M478_3946 PF01040 UbiA prenyltransferase family M478_3947 PF03626 Prokaryotic Cytochrome C oxidase subunit IV M478_3948 PF00510 Cytochrome c oxidase subunit III M478_3949 PF00115 Cytochrome C and Quinol oxidase polypeptide I M478_3950 PF06481 COX Aromatic Rich Motif M478_3950 PF00116 Cytochrome C oxidase subunit II, periplasmic domain M478_3951 PF03502 Nucleoside-specific channel-forming protein, Tsx M478_3952 PF07690 Major Facilitator Superfamily M478_3953 PF03923 Uncharacterized lipoprotein M478_3953 PF08139 Prokaryotic membrane lipoprotein lipid attachment site M478_3954 PF01722 BolA-like protein M478_3956 PF05698 Bacterial trigger factor protein (TF) C-terminus M478_3956 PF05697 Bacterial trigger factor protein (TF) M478_3956 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase M478_3957 PF00574 Clp protease M478_3958 PF10431 C-terminal, D2-small domain, of ClpB protein M478_3958 PF07724 AAA domain (Cdc48 subfamily) M478_3958 PF06689 ClpX C4-type zinc finger M478_3959 PF02190 ATP-dependent protease La (LON) substrate-binding domain M478_3959 PF00004 ATPase family associated with various cellular activities (AAA) M478_3959 PF05362 Lon protease (S16) C-terminal proteolytic domain M478_3960 PF00216 Bacterial DNA-binding protein M478_3961 PF13145 PPIC-type PPIASE domain M478_3964 PF06508 Queuosine biosynthesis protein QueC M478_3965 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle M478_3965 PF12793 Sugar transport-related sRNA regulator N-term M478_3967 PF00291 Pyridoxal-phosphate dependent enzyme M478_3968 PF13404 AsnC-type helix-turn-helix domain M478_3968 PF01037 Lrp/AsnC ligand binding domain M478_3969 PF00664 ABC transporter transmembrane region M478_3969 PF00005 ABC transporter M478_397 PF00665 Integrase core domain M478_397 PF02796 Helix-turn-helix domain of resolvase M478_3970 PF00664 ABC transporter transmembrane region M478_3970 PF00005 ABC transporter M478_3971 PF00543 Nitrogen regulatory protein P-II M478_3972 PF00909 Ammonium Transporter Family M478_3974 PF09619 Type III secretion system lipoprotein chaperone (YscW) M478_3975 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain M478_3976 PF05321 Haemolysin expression modulating protein M478_3977 PF10757 Biofilm formation regulator YbaJ M478_3979 PF00444 Ribosomal protein L36 M478_3980 PF01197 Ribosomal protein L31 M478_3981 PF00873 AcrB/AcrD/AcrF family M478_3982 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion M478_3982 PF00529 HlyD membrane-fusion protein of T1SS M478_3983 PF00440 Bacterial regulatory proteins, tetR family M478_3983 PF08361 MAATS-type transcriptional repressor, C-terminal region M478_3984 PF02635 DsrE/DsrF-like family M478_3985 PF12795 Mechanosensitive ion channel porin domain M478_3985 PF00924 Mechanosensitive ion channel M478_3985 PF12794 Mechanosensitive ion channel inner membrane domain 1 M478_3987 PF04304 Protein of unknown function (DUF454) M478_3988 PF00156 Phosphoribosyl transferase domain M478_3989 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding M478_3989 PF12169 DNA polymerase III subunits gamma and tau domain III M478_3989 PF12170 DNA polymerase III tau subunit V interacting with alpha M478_399 PF01695 IstB-like ATP binding protein M478_3990 PF02575 YbaB/EbfC DNA-binding family M478_3991 PF13662 Toprim domain M478_3991 PF02132 RecR protein M478_3992 PF00183 Hsp90 protein M478_3992 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M478_3993 PF05191 Adenylate kinase, active site lid M478_3994 PF00762 Ferrochelatase M478_3995 PF00175 Oxidoreductase NAD-binding domain M478_3995 PF00970 Oxidoreductase FAD-binding domain M478_3995 PF00111 2Fe-2S iron-sulfur cluster binding domain M478_3996 PF00483 Nucleotidyl transferase M478_3997 PF16363 GDP-mannose 4,6 dehydratase M478_3998 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family M478_3999 PF01370 NAD dependent epimerase/dehydratase family M478_4 PF00005 ABC transporter M478_40 PF03471 Transporter associated domain M478_40 PF00571 CBS domain M478_4007 PF13439 Glycosyltransferase Family 4 M478_4007 PF00534 Glycosyl transferases group 1 M478_4008 PF16363 GDP-mannose 4,6 dehydratase M478_4009 PF16363 GDP-mannose 4,6 dehydratase M478_4010 PF01370 NAD dependent epimerase/dehydratase family M478_4011 PF00483 Nucleotidyl transferase M478_4011 PF01050 Mannose-6-phosphate isomerase M478_4012 PF00535 Glycosyl transferase family 2 M478_4013 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II M478_4013 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III M478_4013 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain M478_4013 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I M478_4014 PF02706 Chain length determinant protein M478_4015 PF00294 pfkB family carbohydrate kinase M478_4016 PF02254 TrkA-N domain M478_4016 PF00999 Sodium/hydrogen exchanger family M478_4017 PF07690 Major Facilitator Superfamily M478_4018 PF02872 5'-nucleotidase, C-terminal domain M478_4018 PF00149 Calcineurin-like phosphoesterase M478_4019 PF00149 Calcineurin-like phosphoesterase M478_4019 PF02872 5'-nucleotidase, C-terminal domain M478_402 PF04717 Type VI secretion system, phage-baseplate injector M478_4020 PF00149 Calcineurin-like phosphoesterase M478_4020 PF02872 5'-nucleotidase, C-terminal domain M478_4023 PF04073 Aminoacyl-tRNA editing domain M478_4024 PF01963 TraB family M478_4025 PF00403 Heavy-metal-associated domain M478_4026 PF13411 MerR HTH family regulatory protein M478_4027 PF01957 NfeD-like C-terminal, partner-binding M478_4028 PF01145 SPFH domain / Band 7 family M478_4028 PF16200 C-terminal region of band_7 M478_4029 PF00085 Thioredoxin M478_4030 PF00106 short chain dehydrogenase M478_4031 PF13472 GDSL-like Lipase/Acylhydrolase family M478_4032 PF00005 ABC transporter M478_4034 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain M478_4034 PF02222 ATP-grasp domain M478_4035 PF00731 AIR carboxylase M478_4036 PF00149 Calcineurin-like phosphoesterase M478_4037 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD M478_4038 PF09190 DALR domain M478_4038 PF01406 tRNA synthetases class I (C) catalytic domain M478_4041 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain M478_4041 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain M478_4048 PF01066 CDP-alcohol phosphatidyltransferase M478_4050 PF01553 Acyltransferase M478_4051 PF12146 Serine aminopeptidase, S33 M478_4051 PF12147 Putative methyltransferase M478_4052 PF00782 Dual specificity phosphatase, catalytic domain M478_4055 PF01695 IstB-like ATP binding protein M478_4056 PF00665 Integrase core domain M478_4056 PF02796 Helix-turn-helix domain of resolvase M478_4057 PF03466 LysR substrate binding domain M478_4057 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M478_4058 PF00248 Aldo/keto reductase family M478_4059 PF00248 Aldo/keto reductase family M478_4064 PF00872 Transposase, Mutator family M478_4065 PF08007 Cupin superfamily protein M478_4067 PF03212 Pertactin M478_4067 PF03797 Autotransporter beta-domain M478_4067 PF16168 Adhesin of bacterial autotransporter system, probable stalk M478_4067 PF13018 Extended Signal Peptide of Type V secretion system M478_4070 PF05638 Type VI secretion system effector, Hcp M478_4075 PF13693 Winged helix-turn-helix DNA-binding M478_4076 PF00905 Penicillin binding protein transpeptidase domain M478_4076 PF06832 Penicillin-Binding Protein C-terminus Family M478_4076 PF00912 Transglycosylase M478_4078 PF01797 Transposase IS200 like M478_4079 PF17972 Bacterial Alpha-2-macroglobulin MG5 domain M478_4079 PF17962 Bacterial macroglobulin domain 6 M478_4079 PF11974 Bacterial alpha-2-macroglobulin MG3 domain M478_4079 PF01835 MG2 domain M478_4079 PF17973 Bacterial Alpha-2-macroglobulin MG10 domain M478_4079 PF07703 Alpha-2-macroglobulin bait region domain M478_4079 PF00207 Alpha-2-macroglobulin family M478_408 PF08274 PhnA Zinc-Ribbon M478_408 PF03831 PhnA domain M478_4084 PF00171 Aldehyde dehydrogenase family M478_4085 PF00205 Thiamine pyrophosphate enzyme, central domain M478_4085 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain M478_4085 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain M478_4086 PF01051 Initiator Replication protein M478_4094 PF01797 Transposase IS200 like M478_41 PF02130 Uncharacterized protein family UPF0054 M478_410 PF04011 LemA family M478_4103 PF17191 RecG wedge domain M478_4103 PF00271 Helicase conserved C-terminal domain M478_4103 PF00270 DEAD/DEAH box helicase M478_4104 PF02195 ParB-like nuclease domain M478_4104 PF17762 HTH domain found in ParB protein M478_4105 PF02195 ParB-like nuclease domain M478_4105 PF17762 HTH domain found in ParB protein M478_4106 PF03412 Peptidase C39 family M478_4106 PF00005 ABC transporter M478_4106 PF00664 ABC transporter transmembrane region M478_413 PF00005 ABC transporter M478_4132 PF08400 Prophage tail fibre N-terminal M478_4132 PF03335 Phage tail fibre repeat M478_4132 PF07484 Phage Tail Collar Domain M478_4132 PF08400 Prophage tail fibre N-terminal M478_4132 PF03335 Phage tail fibre repeat M478_4132 PF07484 Phage Tail Collar Domain M478_4134 PF02413 Caudovirales tail fibre assembly protein, lambda gpK M478_4135 PF01695 IstB-like ATP binding protein M478_414 PF03379 CcmB protein M478_4140 PF00872 Transposase, Mutator family M478_4141 PF02371 Transposase IS116/IS110/IS902 family M478_4141 PF01548 Transposase M478_4143 PF13091 PLD-like domain M478_4145 PF04754 Putative transposase, YhgA-like M478_4146 PF00239 Resolvase, N terminal domain M478_4146 PF02796 Helix-turn-helix domain of resolvase M478_4149 PF13614 AAA domain M478_4149 PF18607 ParA helix turn helix domain M478_415 PF01578 Cytochrome C assembly protein M478_4150 PF08775 ParB family M478_4150 PF02195 ParB-like nuclease domain M478_4153 PF01555 DNA methylase M478_4155 PF07128 Protein of unknown function (DUF1380) M478_4158 PF06006 Bacterial protein of unknown function (DUF905) M478_4159 PF02195 ParB-like nuclease domain M478_416 PF04995 Heme exporter protein D (CcmD) M478_4160 PF00665 Integrase core domain M478_4160 PF02796 Helix-turn-helix domain of resolvase M478_4161 PF01695 IstB-like ATP binding protein M478_4167 PF12833 Helix-turn-helix domain M478_4167 PF06445 GyrI-like small molecule binding domain M478_4168 PF02753 Pili assembly chaperone PapD, C-terminal domain M478_4168 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain M478_4169 PF00577 Outer membrane usher protein M478_4169 PF13953 PapC C-terminal domain M478_4169 PF13954 PapC N-terminal domain M478_417 PF03100 CcmE M478_4170 PF09255 Caf1 Capsule antigen M478_4174 PF11775 Cobalamin biosynthesis protein CobT VWA domain M478_4174 PF06213 Cobalamin biosynthesis protein CobT M478_4176 PF02811 PHP domain M478_4176 PF17657 Bacterial DNA polymerase III alpha subunit finger domain M478_4176 PF07733 Bacterial DNA polymerase III alpha NTPase domain M478_4176 PF14579 Helix-hairpin-helix motif M478_418 PF01578 Cytochrome C assembly protein M478_418 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal M478_4182 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain M478_4182 PF01367 5'-3' exonuclease, C-terminal SAM fold M478_4184 PF00154 recA bacterial DNA recombination protein M478_419 PF08534 Redoxin M478_4194 PF05818 Enterobacterial TraT complement resistance protein M478_4198 PF13614 AAA domain M478_4199 PF02195 ParB-like nuclease domain M478_4199 PF18090 Centromere-binding protein HTH domain M478_42 PF02562 PhoH-like protein M478_420 PF03918 Cytochrome C biogenesis protein M478_4201 PF03693 Bacterial antitoxin of ParD toxin-antitoxin type II system and RHH M478_4203 PF09020 YopE, N terminal M478_4203 PF03545 Yersinia virulence determinant (YopE) M478_4204 PF05932 Tir chaperone protein (CesT) family M478_4205 PF13683 Integrase core domain M478_4205 PF13276 HTH-like domain M478_4206 PF00665 Integrase core domain M478_4207 PF01695 IstB-like ATP binding protein M478_4209 PF13276 HTH-like domain M478_4209 PF13683 Integrase core domain M478_421 PF03918 Cytochrome C biogenesis protein M478_4210 PF01527 Transposase M478_4213 PF00239 Resolvase, N terminal domain M478_4213 PF02796 Helix-turn-helix domain of resolvase M478_4215 PF13700 Domain of unknown function (DUF4158) M478_4215 PF01526 Tn3 transposase DDE domain M478_4216 PF05662 Coiled stalk of trimeric autotransporter adhesin M478_4216 PF03895 YadA-like membrane anchor domain M478_4216 PF05658 Head domain of trimeric autotransporter adhesin M478_4218 PF05662 Coiled stalk of trimeric autotransporter adhesin M478_4218 PF05658 Head domain of trimeric autotransporter adhesin M478_4218 PF03895 YadA-like membrane anchor domain M478_422 PF04333 MlaA lipoprotein M478_4220 PF18272 single-stranded DNA binding TraI N-terminal subdomain M478_4220 PF08751 TrwC relaxase M478_4220 PF07057 DNA helicase TraI M478_4220 PF18340 DNA relaxase TraI 2B/2B-like domain M478_4224 PF10723 Replication regulatory protein RepB M478_4225 PF02387 IncFII RepA protein family M478_423 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) M478_4232 PF09632 Rac1-binding domain M478_4232 PF00069 Protein kinase domain M478_4234 PF13276 HTH-like domain M478_4234 PF13683 Integrase core domain M478_4235 PF00102 Protein-tyrosine phosphatase M478_4235 PF09013 YopH, N-terminal M478_4236 PF13683 Integrase core domain M478_4236 PF13276 HTH-like domain M478_4237 PF02796 Helix-turn-helix domain of resolvase M478_4237 PF00665 Integrase core domain M478_424 PF04175 Protein of unknown function (DUF406) M478_4241 PF01527 Transposase M478_4242 PF09013 YopH, N-terminal M478_4243 PF02108 Flagellar assembly protein FliH M478_4244 PF06578 YOP proteins translocation protein K (YscK) M478_4245 PF01514 Secretory protein of YscJ/FliF family M478_4246 PF17001 Type III secretion basal body protein I, YscI, HrpB, PscI M478_4247 PF09025 YopR, type III needle-polymerisation regulator M478_4248 PF09477 Bacterial type II secretion system chaperone protein (type_III_yscG) M478_4249 PF09392 Type III secretion needle MxiH, YscF, SsaG, EprI, PscF, EscF M478_425 PF02803 Thiolase, C-terminal domain M478_425 PF00108 Thiolase, N-terminal domain M478_4250 PF08988 Type III secretion system, cytoplasmic E component of needle M478_4251 PF16697 Inner membrane component of T3SS, cytoplasmic domain M478_4251 PF16693 Inner membrane component of T3SS, periplasmic domain M478_4253 PF05932 Tir chaperone protein (CesT) family M478_4254 PF12833 Helix-turn-helix domain M478_4254 PF02311 AraC-like ligand binding domain M478_4256 PF01312 FlhB HrpN YscU SpaS Family M478_4257 PF01311 Bacterial export proteins, family 1 M478_4258 PF01313 Bacterial export proteins, family 3 M478_4259 PF00813 FliP family M478_426 PF00378 Enoyl-CoA hydratase/isomerase M478_426 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain M478_426 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain M478_4260 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term M478_4261 PF02120 Flagellar hook-length control protein FliK M478_4262 PF07321 Type III secretion protein YscO M478_4263 PF18269 T3SS EscN ATPase C-terminal domain M478_4263 PF02874 ATP synthase alpha/beta family, beta-barrel domain M478_4263 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain M478_4264 PF07201 HrpJ-like domain M478_4265 PF09059 TyeA M478_4267 PF09474 Type III secretion system YscX (type_III_YscX) M478_4269 PF00771 FHIPEP family M478_427 PF00300 Histidine phosphatase superfamily (branch 1) M478_4270 PF09621 Type III secretion system regulator (LcrR) M478_4271 PF07216 LcrG protein M478_4272 PF04792 V antigen (LcrV) protein M478_4273 PF07720 Tetratricopeptide repeat M478_4274 PF04888 Secretion system effector C (SseC) like family M478_4275 PF05844 YopD protein M478_4277 PF12468 Type III secretion system leucine rich repeat protein M478_428 PF01713 Smr domain M478_4281 PF05932 Tir chaperone protein (CesT) family M478_4282 PF03543 Yersinia/Haemophilus virulence surface antigen M478_4285 PF01815 Rop protein M478_4286 PF01695 IstB-like ATP binding protein M478_4287 PF02796 Helix-turn-helix domain of resolvase M478_4287 PF00665 Integrase core domain M478_4288 PF05973 Phage derived protein Gp49-like (DUF891) M478_429 PF05175 Methyltransferase small domain M478_4290 PF01278 Omptin family M478_43 PF01938 TRAM domain M478_43 PF00919 Uncharacterized protein family UPF0004 M478_43 PF04055 Radical SAM superfamily M478_430 PF01264 Chorismate synthase M478_431 PF03411 Penicillin-insensitive murein endopeptidase M478_432 PF01925 Sulfite exporter TauE/SafE M478_433 PF04315 Elongation factor P hydroxylase M478_434 PF08891 YfcL protein M478_435 PF01266 FAD dependent oxidoreductase M478_435 PF05430 S-adenosyl-L-methionine-dependent methyltransferase M478_436 PF00109 Beta-ketoacyl synthase, N-terminal domain M478_436 PF02801 Beta-ketoacyl synthase, C-terminal domain M478_437 PF01177 Asp/Glu/Hydantoin racemase M478_438 PF00419 Fimbrial protein M478_44 PF01494 FAD binding domain M478_440 PF00892 EamA-like transporter family M478_442 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain M478_442 PF11890 Domain of unknown function (DUF3410) M478_442 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain M478_443 PF01118 Semialdehyde dehydrogenase, NAD binding domain M478_443 PF02774 Semialdehyde dehydrogenase, dimerisation domain M478_444 PF01416 tRNA pseudouridine synthase M478_445 PF09335 SNARE associated Golgi protein M478_446 PF17848 Acetyl-coA carboxylase zinc finger domain M478_446 PF01039 Carboxyl transferase domain M478_447 PF08245 Mur ligase middle domain M478_447 PF02875 Mur ligase family, glutamate ligase domain M478_448 PF05036 Sporulation related domain M478_449 PF02674 Colicin V production protein M478_450 PF00156 Phosphoribosyl transferase domain M478_451 PF02441 Flavoprotein M478_452 PF00497 Bacterial extracellular solute-binding proteins, family 3 M478_453 PF00528 Binding-protein-dependent transport system inner membrane component M478_454 PF00528 Binding-protein-dependent transport system inner membrane component M478_455 PF00005 ABC transporter M478_456 PF01370 NAD dependent epimerase/dehydratase family M478_456 PF08338 Domain of unknown function (DUF1731) M478_458 PF12850 Calcineurin-like phosphoesterase superfamily domain M478_459 PF00293 NUDIX domain M478_460 PF03611 PTS system sugar-specific permease component M478_461 PF00872 Transposase, Mutator family M478_463 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 M478_464 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family M478_464 PF00356 Bacterial regulatory proteins, lacI family M478_465 PF01515 Phosphate acetyl/butaryl transferase M478_465 PF07085 DRTGG domain M478_466 PF00871 Acetokinase family M478_467 PF04217 Protein of unknown function, DUF412 M478_468 PF03887 YfbU domain M478_469 PF13419 Haloacid dehalogenase-like hydrolase M478_470 PF02080 TrkA-C domain M478_470 PF03600 Citrate transporter M478_472 PF00155 Aminotransferase class I and II M478_473 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M478_473 PF03466 LysR substrate binding domain M478_474 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 M478_475 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit M478_476 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit M478_476 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit M478_478 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region M478_478 PF10531 SLBB domain M478_478 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit M478_479 PF04879 Molybdopterin oxidoreductase Fe4S4 domain M478_479 PF00384 Molybdopterin oxidoreductase M478_479 PF01568 Molydopterin dinucleotide binding domain M478_479 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region M478_480 PF00146 NADH dehydrogenase M478_481 PF12838 4Fe-4S dicluster domain M478_482 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 M478_483 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L M478_484 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus M478_484 PF00361 Proton-conducting membrane transporter M478_485 PF00361 Proton-conducting membrane transporter M478_486 PF00361 Proton-conducting membrane transporter M478_489 PF00106 short chain dehydrogenase M478_490 PF01202 Shikimate kinase M478_493 PF00356 Bacterial regulatory proteins, lacI family M478_494 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain M478_494 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain M478_495 PF07690 Major Facilitator Superfamily M478_496 PF03928 Haem-degrading M478_497 PF00920 Dehydratase family M478_499 PF05957 Bacterial protein of unknown function (DUF883) M478_5 PF02653 Branched-chain amino acid transport system / permease component M478_501 PF00425 chorismate binding enzyme M478_502 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain M478_502 PF16582 Middle domain of thiamine pyrophosphate M478_502 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain M478_503 PF12697 Alpha/beta hydrolase family M478_504 PF00378 Enoyl-CoA hydratase/isomerase M478_505 PF13378 Enolase C-terminal domain-like M478_506 PF00501 AMP-binding enzyme M478_506 PF13193 AMP-binding enzyme C-terminal domain M478_507 PF02885 Glycosyl transferase family, helical bundle domain M478_508 PF07338 Protein of unknown function (DUF1471) M478_509 PF05971 RNA methyltransferase M478_51 PF13537 Glutamine amidotransferase domain M478_51 PF00733 Asparagine synthase M478_510 PF01695 IstB-like ATP binding protein M478_511 PF02796 Helix-turn-helix domain of resolvase M478_511 PF00665 Integrase core domain M478_512 PF13426 PAS domain M478_512 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain M478_512 PF08447 PAS fold M478_513 PF00005 ABC transporter M478_514 PF00528 Binding-protein-dependent transport system inner membrane component M478_515 PF00497 Bacterial extracellular solute-binding proteins, family 3 M478_517 PF00210 Ferritin-like domain M478_518 PF13649 Methyltransferase domain M478_52 PF13344 Haloacid dehalogenase-like hydrolase M478_520 PF00892 EamA-like transporter family M478_521 PF13505 Outer membrane protein beta-barrel domain M478_525 PF00107 Zinc-binding dehydrogenase M478_525 PF08240 Alcohol dehydrogenase GroES-like domain M478_526 PF13407 Periplasmic binding protein domain M478_527 PF00005 ABC transporter M478_528 PF02653 Branched-chain amino acid transport system / permease component M478_529 PF00356 Bacterial regulatory proteins, lacI family M478_53 PF01047 MarR family M478_53 PF00480 ROK family M478_530 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M478_530 PF03466 LysR substrate binding domain M478_531 PF00180 Isocitrate/isopropylmalate dehydrogenase M478_532 PF02028 BCCT, betaine/carnitine/choline family transporter M478_533 PF00355 Rieske [2Fe-2S] domain M478_533 PF00848 Ring hydroxylating alpha subunit (catalytic domain) M478_534 PF00848 Ring hydroxylating alpha subunit (catalytic domain) M478_534 PF00355 Rieske [2Fe-2S] domain M478_535 PF00970 Oxidoreductase FAD-binding domain M478_535 PF00111 2Fe-2S iron-sulfur cluster binding domain M478_535 PF00175 Oxidoreductase NAD-binding domain M478_536 PF08479 POTRA domain, ShlB-type M478_536 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB M478_536 PF17287 POTRA domain M478_537 PF04829 Pre-toxin domain with VENN motif M478_537 PF13332 Hemagglutinin repeat M478_537 PF13018 Extended Signal Peptide of Type V secretion system M478_537 PF05860 haemagglutination activity domain M478_54 PF01979 Amidohydrolase family M478_540 PF13332 Hemagglutinin repeat M478_540 PF05860 haemagglutination activity domain M478_540 PF04829 Pre-toxin domain with VENN motif M478_540 PF13018 Extended Signal Peptide of Type V secretion system M478_543 PF13332 Hemagglutinin repeat M478_543 PF15526 Novel toxin 21 M478_543 PF05860 haemagglutination activity domain M478_543 PF05594 Haemagluttinin repeat M478_543 PF04829 Pre-toxin domain with VENN motif M478_545 PF17912 MalK OB fold domain M478_545 PF00005 ABC transporter M478_546 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I M478_546 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II M478_546 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain M478_546 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III M478_547 PF00356 Bacterial regulatory proteins, lacI family M478_549 PF00528 Binding-protein-dependent transport system inner membrane component M478_55 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase M478_550 PF00528 Binding-protein-dependent transport system inner membrane component M478_551 PF04041 beta-1,4-mannooligosaccharide phosphorylase M478_555 PF00924 Mechanosensitive ion channel M478_556 PF01867 CRISPR associated protein Cas1 M478_558 PF09611 CRISPR-associated protein (Cas_Csy1) M478_559 PF09614 CRISPR-associated protein (Cas_Csy2) M478_56 PF02378 Phosphotransferase system, EIIC M478_56 PF00367 phosphotransferase system, EIIB M478_56 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 M478_560 PF09615 CRISPR-associated protein (Cas_Csy3) M478_561 PF09618 CRISPR-associated protein (Cas_Csy4) M478_562 PF00248 Aldo/keto reductase family M478_564 PF00083 Sugar (and other) transporter M478_566 PF03466 LysR substrate binding domain M478_566 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M478_567 PF00765 Autoinducer synthase M478_568 PF00196 Bacterial regulatory proteins, luxR family M478_568 PF03472 Autoinducer binding domain M478_57 PF01797 Transposase IS200 like M478_572 PF01594 AI-2E family transporter M478_573 PF00196 Bacterial regulatory proteins, luxR family M478_574 PF01266 FAD dependent oxidoreductase M478_576 PF00872 Transposase, Mutator family M478_577 PF00872 Transposase, Mutator family M478_578 PF03992 Antibiotic biosynthesis monooxygenase M478_579 PF01979 Amidohydrolase family M478_58 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain M478_58 PF00749 tRNA synthetases class I (E and Q), catalytic domain M478_580 PF06183 DinI-like family M478_581 PF00872 Transposase, Mutator family M478_582 PF13991 BssS protein family M478_583 PF00575 S1 RNA binding domain M478_583 PF12111 Polyribonucleotide phosphorylase C terminal M478_583 PF10150 Ribonuclease E/G family M478_584 PF01479 S4 domain M478_584 PF00849 RNA pseudouridylate synthase M478_585 PF02545 Maf-like protein M478_586 PF02620 Large ribosomal RNA subunit accumulation protein YceD M478_587 PF01783 Ribosomal L32p protein family M478_588 PF02504 Fatty acid synthesis protein M478_589 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III M478_589 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal M478_59 PF03573 outer membrane porin, OprD family M478_590 PF00698 Acyl transferase domain M478_592 PF00550 Phosphopantetheine attachment site M478_593 PF00109 Beta-ketoacyl synthase, N-terminal domain M478_593 PF02801 Beta-ketoacyl synthase, C-terminal domain M478_594 PF01797 Transposase IS200 like M478_595 PF01063 Amino-transferase class IV M478_596 PF02618 YceG-like family M478_597 PF02223 Thymidylate kinase M478_598 PF09115 DNA polymerase III, delta subunit, C terminal M478_599 PF01026 TatD related DNase M478_6 PF02894 Oxidoreductase family, C-terminal alpha/beta domain M478_6 PF01408 Oxidoreductase family, NAD-binding Rossmann fold M478_60 PF02838 Glycosyl hydrolase family 20, domain 2 M478_60 PF03174 Chitobiase/beta-hexosaminidase C-terminal domain M478_60 PF00728 Glycosyl hydrolase family 20, catalytic domain M478_60 PF03173 Putative carbohydrate binding domain M478_600 PF02378 Phosphotransferase system, EIIC M478_600 PF00367 phosphotransferase system, EIIB M478_602 PF01695 IstB-like ATP binding protein M478_604 PF00665 Integrase core domain M478_604 PF02796 Helix-turn-helix domain of resolvase M478_605 PF02796 Helix-turn-helix domain of resolvase M478_605 PF00665 Integrase core domain M478_606 PF08501 Shikimate dehydrogenase substrate binding domain M478_607 PF01230 HIT domain M478_608 PF07233 Protein of unknown function (DUF1425) M478_609 PF08139 Prokaryotic membrane lipoprotein lipid attachment site M478_609 PF13036 Peptidoglycan-synthase activator LpoB M478_61 PF00728 Glycosyl hydrolase family 20, catalytic domain M478_61 PF03173 Putative carbohydrate binding domain M478_61 PF03174 Chitobiase/beta-hexosaminidase C-terminal domain M478_61 PF02838 Glycosyl hydrolase family 20, domain 2 M478_610 PF01636 Phosphotransferase enzyme family M478_611 PF00933 Glycosyl hydrolase family 3 N terminal domain M478_612 PF05728 Uncharacterised protein family (UPF0227) M478_613 PF07992 Pyridine nucleotide-disulphide oxidoreductase M478_616 PF00872 Transposase, Mutator family M478_617 PF05433 Glycine zipper 2TM domain M478_618 PF17757 UvrB interaction domain M478_618 PF00271 Helicase conserved C-terminal domain M478_618 PF02559 CarD-like/TRCF domain M478_618 PF00270 DEAD/DEAH box helicase M478_618 PF03461 TRCF domain M478_619 PF12704 MacB-like periplasmic core domain M478_619 PF02687 FtsX-like permease family M478_62 PF01475 Ferric uptake regulator family M478_620 PF00005 ABC transporter M478_621 PF02687 FtsX-like permease family M478_621 PF12704 MacB-like periplasmic core domain M478_622 PF00480 ROK family M478_623 PF02146 Sir2 family M478_624 PF07687 Peptidase dimerisation domain M478_624 PF01546 Peptidase family M20/M25/M40 M478_625 PF08007 Cupin superfamily protein M478_626 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M478_626 PF08918 PhoQ Sensor M478_627 PF00072 Response regulator receiver domain M478_627 PF00486 Transcriptional regulatory protein, C terminal M478_629 PF00206 Lyase M478_629 PF08328 Adenylosuccinate lyase C-terminal M478_63 PF00258 Flavodoxin M478_630 PF04356 Protein of unknown function (DUF489) M478_632 PF00293 NUDIX domain M478_633 PF00849 RNA pseudouridylate synthase M478_634 PF00180 Isocitrate/isopropylmalate dehydrogenase M478_635 PF00356 Bacterial regulatory proteins, lacI family M478_635 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family M478_637 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain M478_637 PF08447 PAS fold M478_638 PF05368 NmrA-like family M478_639 PF01638 HxlR-like helix-turn-helix M478_64 PF01402 Ribbon-helix-helix protein, copG family M478_641 PF00328 Histidine phosphatase superfamily (branch 2) M478_642 PF14001 YdfZ protein M478_644 PF01037 Lrp/AsnC ligand binding domain M478_644 PF13404 AsnC-type helix-turn-helix domain M478_645 PF10777 Inner membrane protein YlaC M478_646 PF00550 Phosphopantetheine attachment site M478_646 PF08240 Alcohol dehydrogenase GroES-like domain M478_646 PF00107 Zinc-binding dehydrogenase M478_646 PF16197 Ketoacyl-synthetase C-terminal extension M478_646 PF00109 Beta-ketoacyl synthase, N-terminal domain M478_646 PF02801 Beta-ketoacyl synthase, C-terminal domain M478_646 PF14765 Polyketide synthase dehydratase M478_646 PF08659 KR domain M478_646 PF00698 Acyl transferase domain M478_647 PF16353 Domain of unknown function(DUF4981) M478_647 PF02929 Beta galactosidase small chain M478_647 PF02837 Glycosyl hydrolases family 2, sugar binding domain M478_647 PF02836 Glycosyl hydrolases family 2, TIM barrel domain M478_647 PF00703 Glycosyl hydrolases family 2 M478_648 PF00313 'Cold-shock' DNA-binding domain M478_649 PF10781 Dextransucrase DSRB M478_650 PF00672 HAMP domain M478_650 PF02203 Tar ligand binding domain homologue M478_650 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain M478_651 PF00672 HAMP domain M478_651 PF02203 Tar ligand binding domain homologue M478_651 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain M478_652 PF02308 MgtC family M478_653 PF00689 Cation transporting ATPase, C-terminus M478_653 PF00690 Cation transporter/ATPase, N-terminus M478_654 PF05247 Flagellar transcriptional activator (FlhD) M478_655 PF05280 Flagellar transcriptional activator (FlhC) M478_656 PF01618 MotA/TolQ/ExbB proton channel family M478_657 PF13677 Membrane MotB of proton-channel complex MotA/MotB M478_657 PF00691 OmpA family M478_658 PF01627 Hpt domain M478_658 PF01584 CheW-like domain M478_658 PF09078 CheY binding M478_658 PF02895 Signal transducing histidine kinase, homodimeric domain M478_658 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M478_659 PF01584 CheW-like domain M478_66 PF12697 Alpha/beta hydrolase family M478_660 PF07690 Major Facilitator Superfamily M478_661 PF01042 Endoribonuclease L-PSP M478_663 PF13309 HTH domain M478_663 PF08348 YheO-like PAS domain M478_668 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain M478_668 PF00672 HAMP domain M478_668 PF02203 Tar ligand binding domain homologue M478_669 PF02203 Tar ligand binding domain homologue M478_669 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain M478_669 PF00672 HAMP domain M478_670 PF03705 CheR methyltransferase, all-alpha domain M478_670 PF01739 CheR methyltransferase, SAM binding domain M478_671 PF00072 Response regulator receiver domain M478_671 PF01339 CheB methylesterase M478_672 PF00072 Response regulator receiver domain M478_673 PF04344 Chemotaxis phosphatase, CheZ M478_674 PF01510 N-acetylmuramoyl-L-alanine amidase M478_675 PF05662 Coiled stalk of trimeric autotransporter adhesin M478_675 PF05658 Head domain of trimeric autotransporter adhesin M478_675 PF03895 YadA-like membrane anchor domain M478_675 PF13018 Extended Signal Peptide of Type V secretion system M478_676 PF13018 Extended Signal Peptide of Type V secretion system M478_676 PF03895 YadA-like membrane anchor domain M478_676 PF05662 Coiled stalk of trimeric autotransporter adhesin M478_676 PF05658 Head domain of trimeric autotransporter adhesin M478_679 PF00842 Alanine racemase, C-terminal domain M478_679 PF01168 Alanine racemase, N-terminal domain M478_68 PF01527 Transposase M478_685 PF01695 IstB-like ATP binding protein M478_686 PF00665 Integrase core domain M478_686 PF02796 Helix-turn-helix domain of resolvase M478_688 PF07351 Protein of unknown function (DUF1480) M478_69 PF13356 Arm DNA-binding domain M478_69 PF00589 Phage integrase family M478_691 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain M478_691 PF02753 Pili assembly chaperone PapD, C-terminal domain M478_695 PF02470 MlaD protein M478_696 PF04403 Paraquat-inducible protein A M478_697 PF13185 GAF domain M478_698 PF17516 ProQ C-terminal domain M478_698 PF04352 ProQ/FINO family M478_699 PF11818 C-terminal domain of tail specific protease (DUF3340) M478_699 PF00595 PDZ domain M478_699 PF03572 Peptidase family S41 M478_699 PF17804 Tail specific protease N-terminal domain M478_7 PF00294 pfkB family carbohydrate kinase M478_70 PF01695 IstB-like ATP binding protein M478_701 PF01435 Peptidase family M48 M478_702 PF00419 Fimbrial protein M478_703 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain M478_703 PF02753 Pili assembly chaperone PapD, C-terminal domain M478_704 PF00577 Outer membrane usher protein M478_704 PF13953 PapC C-terminal domain M478_704 PF13954 PapC N-terminal domain M478_706 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain M478_706 PF02753 Pili assembly chaperone PapD, C-terminal domain M478_707 PF07690 Major Facilitator Superfamily M478_708 PF14583 Oligogalacturonate lyase M478_709 PF01614 Bacterial transcriptional regulator M478_709 PF09339 IclR helix-turn-helix domain M478_71 PF00665 Integrase core domain M478_71 PF02796 Helix-turn-helix domain of resolvase M478_710 PF01510 N-acetylmuramoyl-L-alanine amidase M478_712 PF04307 LexA-binding, inner membrane-associated putative hydrolase M478_713 PF06178 Oligogalacturonate-specific porin protein (KdgM) M478_714 PF01547 Bacterial extracellular solute-binding protein M478_715 PF03459 TOBE domain M478_715 PF00005 ABC transporter M478_715 PF17912 MalK OB fold domain M478_716 PF00528 Binding-protein-dependent transport system inner membrane component M478_717 PF00528 Binding-protein-dependent transport system inner membrane component M478_718 PF06917 Periplasmic pectate lyase M478_720 PF04962 KduI/IolB family M478_721 PF07883 Cupin domain M478_722 PF00872 Transposase, Mutator family M478_723 PF13419 Haloacid dehalogenase-like hydrolase M478_724 PF14002 YniB-like protein M478_726 PF00950 ABC 3 transport family M478_727 PF00950 ABC 3 transport family M478_728 PF00005 ABC transporter M478_729 PF01297 Zinc-uptake complex component A periplasmic M478_73 PF04069 Substrate binding domain of ABC-type glycine betaine transport system M478_730 PF01464 Transglycosylase SLT domain M478_731 PF01914 MarC family integral membrane protein M478_733 PF13619 KTSC domain M478_734 PF03129 Anticodon binding domain M478_734 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) M478_734 PF02824 TGS domain M478_734 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain M478_735 PF05198 Translation initiation factor IF-3, N-terminal domain M478_735 PF00707 Translation initiation factor IF-3, C-terminal domain M478_736 PF01632 Ribosomal protein L35 M478_737 PF00453 Ribosomal protein L20 M478_738 PF01409 tRNA synthetases class II core domain (F) M478_738 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain M478_739 PF03484 tRNA synthetase B5 domain M478_739 PF03147 Ferredoxin-fold anticodon binding domain M478_739 PF01588 Putative tRNA binding domain M478_739 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain M478_739 PF03483 B3/4 domain M478_74 PF00528 Binding-protein-dependent transport system inner membrane component M478_740 PF00216 Bacterial DNA-binding protein M478_742 PF01032 FecCD transport family M478_743 PF00255 Glutathione peroxidase M478_744 PF00005 ABC transporter M478_745 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family M478_746 PF00535 Glycosyl transferase family 2 M478_747 PF00551 Formyl transferase M478_747 PF02911 Formyl transferase, C-terminal domain M478_747 PF01370 NAD dependent epimerase/dehydratase family M478_748 PF01522 Polysaccharide deacetylase M478_749 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase M478_75 PF00005 ABC transporter M478_75 PF00571 CBS domain M478_750 PF00892 EamA-like transporter family M478_752 PF00877 NlpC/P60 family M478_753 PF03099 Biotin/lipoate A/B protein ligase family M478_753 PF10437 Bacterial lipoate protein ligase C-terminus M478_754 PF02696 Uncharacterized ACR, YdiU/UPF0061 family M478_755 PF02696 Uncharacterized ACR, YdiU/UPF0061 family M478_756 PF00793 DAHP synthetase I family M478_757 PF03618 Kinase/pyrophosphorylase M478_758 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain M478_758 PF02896 PEP-utilising enzyme, TIM barrel domain M478_758 PF00391 PEP-utilising enzyme, mobile domain M478_759 PF01594 AI-2E family transporter M478_76 PF00268 Ribonucleotide reductase, small chain M478_760 PF02913 FAD linked oxidases, C-terminal domain M478_760 PF01565 FAD binding domain M478_760 PF13183 4Fe-4S dicluster domain M478_761 PF03061 Thioesterase superfamily M478_762 PF01521 Iron-sulphur cluster biosynthesis M478_763 PF01458 Uncharacterized protein family (UPF0051) M478_764 PF00005 ABC transporter M478_765 PF01458 Uncharacterized protein family (UPF0051) M478_766 PF00266 Aminotransferase class-V M478_767 PF02657 Fe-S metabolism associated domain M478_768 PF17969 L,D-transpeptidase C-terminal domain M478_768 PF01476 LysM domain M478_768 PF03734 L,D-transpeptidase catalytic domain M478_769 PF01695 IstB-like ATP binding protein M478_77 PF08343 Ribonucleotide reductase N-terminal M478_77 PF00317 Ribonucleotide reductase, all-alpha domain M478_77 PF02867 Ribonucleotide reductase, barrel domain M478_771 PF02796 Helix-turn-helix domain of resolvase M478_771 PF00665 Integrase core domain M478_772 PF00665 Integrase core domain M478_772 PF02796 Helix-turn-helix domain of resolvase M478_774 PF04728 Lipoprotein leucine-zipper M478_775 PF00224 Pyruvate kinase, barrel domain M478_775 PF02887 Pyruvate kinase, alpha/beta domain M478_778 PF01554 MatE M478_779 PF00677 Lumazine binding domain M478_78 PF07972 NrdI Flavodoxin like M478_781 PF07690 Major Facilitator Superfamily M478_782 PF03466 LysR substrate binding domain M478_782 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M478_783 PF00356 Bacterial regulatory proteins, lacI family M478_785 PF02777 Iron/manganese superoxide dismutases, C-terminal domain M478_785 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain M478_786 PF00877 NlpC/P60 family M478_788 PF00462 Glutaredoxin M478_789 PF00929 Exonuclease M478_790 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily M478_791 PF00724 NADH:flavin oxidoreductase / NADH oxidase family M478_792 PF00440 Bacterial regulatory proteins, tetR family M478_792 PF16925 Tetracyclin repressor-like, C-terminal domain M478_793 PF08019 Phosphoethanolamine transferase EptA/EptB M478_793 PF00884 Sulfatase M478_794 PF01047 MarR family M478_795 PF05433 Glycine zipper 2TM domain M478_796 PF03702 Anhydro-N-acetylmuramic acid kinase M478_797 PF09864 Membrane-bound lysozyme-inhibitor of c-type lysozyme M478_798 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region M478_798 PF01243 Pyridoxamine 5'-phosphate oxidase M478_799 PF00579 tRNA synthetases class I (W and Y) M478_799 PF01479 S4 domain M478_8 PF01261 Xylose isomerase-like TIM barrel M478_80 PF06392 Acid shock protein repeat M478_800 PF08543 Phosphomethylpyrimidine kinase M478_801 PF02798 Glutathione S-transferase, N-terminal domain M478_801 PF00043 Glutathione S-transferase, C-terminal domain M478_802 PF11656 YjbD family (DUF3811) M478_803 PF04893 Yip1 domain M478_804 PF00854 POT family M478_807 PF00005 ABC transporter M478_808 PF08352 Oligopeptide/dipeptide transporter, C-terminal region M478_808 PF00005 ABC transporter M478_809 PF00528 Binding-protein-dependent transport system inner membrane component M478_809 PF12911 N-terminal TM domain of oligopeptide transport permease C M478_81 PF09400 Protein of unknown function (DUF2002) M478_810 PF00528 Binding-protein-dependent transport system inner membrane component M478_811 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle M478_812 PF01797 Transposase IS200 like M478_813 PF00158 Sigma-54 interaction domain M478_813 PF02954 Bacterial regulatory protein, Fis family M478_814 PF04012 PspA/IM30 family M478_815 PF06667 Phage shock protein B M478_816 PF04024 PspC domain M478_818 PF04317 YcjX-like family, DUF463 M478_819 PF05128 Domain of unknown function (DUF697) M478_82 PF06711 Protein of unknown function (DUF1198) M478_822 PF00158 Sigma-54 interaction domain M478_822 PF18024 Helix-turn-helix domain M478_824 PF08534 Redoxin M478_825 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain M478_825 PF13378 Enolase C-terminal domain-like M478_826 PF00246 Zinc carboxypeptidase M478_827 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle M478_828 PF01544 CorA-like Mg2+ transporter protein M478_830 PF07859 alpha/beta hydrolase fold M478_830 PF13472 GDSL-like Lipase/Acylhydrolase family M478_832 PF01171 PP-loop family M478_833 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg M478_833 PF10371 Domain of unknown function M478_833 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain M478_833 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase M478_833 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II M478_834 PF00893 Small Multidrug Resistance protein M478_835 PF02308 MgtC family M478_836 PF03891 Domain of unknown function (DUF333) M478_837 PF03724 META domain M478_838 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain M478_838 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain M478_839 PF11739 Dicarboxylate transport M478_84 PF00313 'Cold-shock' DNA-binding domain M478_840 PF13617 YnbE-like lipoprotein M478_841 PF07027 Protein of unknown function (DUF1318) M478_842 PF01232 Mannitol dehydrogenase Rossmann domain M478_842 PF08125 Mannitol dehydrogenase C-terminal domain M478_843 PF00325 Bacterial regulatory proteins, crp family M478_843 PF04198 Putative sugar-binding domain M478_844 PF02525 Flavodoxin-like fold M478_845 PF00270 DEAD/DEAH box helicase M478_845 PF00271 Helicase conserved C-terminal domain M478_845 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold M478_845 PF04408 Helicase associated domain (HA2) M478_845 PF11898 Domain of unknown function (DUF3418) M478_848 PF00089 Trypsin M478_85 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle M478_850 PF01292 Prokaryotic cytochrome b561 M478_852 PF18807 Tripartite Tc toxins repeat M478_852 PF14431 YwqJ-like deaminase M478_853 PF01695 IstB-like ATP binding protein M478_855 PF02796 Helix-turn-helix domain of resolvase M478_855 PF00665 Integrase core domain M478_856 PF00171 Aldehyde dehydrogenase family M478_856 PF00465 Iron-containing alcohol dehydrogenase M478_857 PF01914 MarC family integral membrane protein M478_858 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle M478_859 PF00528 Binding-protein-dependent transport system inner membrane component M478_86 PF00528 Binding-protein-dependent transport system inner membrane component M478_860 PF12911 N-terminal TM domain of oligopeptide transport permease C M478_860 PF00528 Binding-protein-dependent transport system inner membrane component M478_861 PF08352 Oligopeptide/dipeptide transporter, C-terminal region M478_861 PF00005 ABC transporter M478_862 PF08352 Oligopeptide/dipeptide transporter, C-terminal region M478_862 PF00005 ABC transporter M478_864 PF04269 Protein of unknown function, DUF440 M478_865 PF13396 Phospholipase_D-nuclease N-terminal M478_865 PF13091 PLD-like domain M478_866 PF13505 Outer membrane protein beta-barrel domain M478_869 PF03795 YCII-related domain M478_87 PF00528 Binding-protein-dependent transport system inner membrane component M478_87 PF12911 N-terminal TM domain of oligopeptide transport permease C M478_871 PF03544 Gram-negative bacterial TonB protein C-terminal M478_872 PF00872 Transposase, Mutator family M478_873 PF03061 Thioesterase superfamily M478_874 PF04279 Intracellular septation protein A M478_878 PF03922 OmpW family M478_88 PF00005 ABC transporter M478_880 PF00290 Tryptophan synthase alpha chain M478_881 PF00291 Pyridoxal-phosphate dependent enzyme M478_882 PF00218 Indole-3-glycerol phosphate synthase M478_882 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase M478_883 PF02885 Glycosyl transferase family, helical bundle domain M478_883 PF00591 Glycosyl transferase family, a/b domain M478_884 PF00117 Glutamine amidotransferase class-I M478_885 PF04715 Anthranilate synthase component I, N terminal region M478_885 PF00425 chorismate binding enzyme M478_886 PF02811 PHP domain M478_887 PF01300 Telomere recombination M478_888 PF00849 RNA pseudouridylate synthase M478_888 PF01479 S4 domain M478_889 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP M478_89 PF00005 ABC transporter M478_890 PF00106 short chain dehydrogenase M478_891 PF01343 Peptidase family S49 M478_891 PF08496 Peptidase family S49 N-terminal M478_892 PF10692 Protein of unknown function (DUF2498) M478_894 PF01751 Toprim domain M478_894 PF01396 Topoisomerase DNA binding C4 zinc finger M478_894 PF01131 DNA topoisomerase M478_894 PF08272 Topoisomerase I zinc-ribbon-like M478_895 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M478_895 PF03466 LysR substrate binding domain M478_897 PF00694 Aconitase C-terminal domain M478_897 PF00330 Aconitase family (aconitate hydratase) M478_898 PF00925 GTP cyclohydrolase II M478_899 PF01569 PAP2 superfamily M478_9 PF04962 KduI/IolB family M478_900 PF06305 Lipopolysaccharide assembly protein A domain M478_901 PF18073 Rubredoxin metal binding domain M478_903 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family M478_904 PF01253 Translation initiation factor SUI1 M478_905 PF05433 Glycine zipper 2TM domain M478_906 PF00596 Class II Aldolase and Adducin N-terminal domain M478_908 PF00923 Transaldolase/Fructose-6-phosphate aldolase M478_909 PF04328 Selenoprotein, putative M478_91 PF00547 Urease, gamma subunit M478_910 PF13722 5TM C-terminal transporter carbon starvation CstA M478_910 PF02554 Carbon starvation protein CstA M478_911 PF17876 Cold shock domain M478_911 PF08206 Ribonuclease B OB domain M478_911 PF00773 RNB domain M478_911 PF00575 S1 RNA binding domain M478_912 PF07690 Major Facilitator Superfamily M478_913 PF01370 NAD dependent epimerase/dehydratase family M478_914 PF00633 Helix-hairpin-helix motif M478_914 PF10576 Iron-sulfur binding domain of endonuclease III M478_914 PF00730 HhH-GPD superfamily base excision DNA repair protein M478_915 PF02508 Rnf-Nqr subunit, membrane protein M478_916 PF04205 FMN-binding domain M478_917 PF03116 NQR2, RnfD, RnfE family M478_918 PF12833 Helix-turn-helix domain M478_918 PF06445 GyrI-like small molecule binding domain M478_919 PF13375 RnfC Barrel sandwich hybrid domain M478_919 PF10531 SLBB domain M478_919 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit M478_919 PF13237 4Fe-4S dicluster domain M478_92 PF00699 Urease beta subunit M478_920 PF04060 Putative Fe-S cluster M478_921 PF02508 Rnf-Nqr subunit, membrane protein M478_922 PF10754 Protein of unknown function (DUF2569) M478_923 PF03412 Peptidase C39 family M478_923 PF00664 ABC transporter transmembrane region M478_923 PF00005 ABC transporter M478_924 PF13533 Biotin-lipoyl like M478_926 PF03412 Peptidase C39 family M478_926 PF00005 ABC transporter M478_926 PF00664 ABC transporter transmembrane region M478_928 PF02610 L-arabinose isomerase M478_928 PF11762 L-arabinose isomerase C-terminal domain M478_929 PF02782 FGGY family of carbohydrate kinases, C-terminal domain M478_93 PF00449 Urease alpha-subunit, N-terminal domain M478_93 PF01979 Amidohydrolase family M478_930 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family M478_931 PF00005 ABC transporter M478_932 PF02653 Branched-chain amino acid transport system / permease component M478_933 PF02311 AraC-like ligand binding domain M478_933 PF12833 Helix-turn-helix domain M478_934 PF01408 Oxidoreductase family, NAD-binding Rossmann fold M478_934 PF02894 Oxidoreductase family, C-terminal alpha/beta domain M478_935 PF13593 SBF-like CPA transporter family (DUF4137) M478_937 PF06097 Bacterial protein of unknown function (DUF945) M478_938 PF01238 Phosphomannose isomerase type I M478_939 PF00206 Lyase M478_939 PF10415 Fumarase C C-terminus M478_94 PF02814 UreE urease accessory protein, N-terminal domain M478_94 PF05194 UreE urease accessory protein, C-terminal domain M478_940 PF05472 DNA replication terminus site-binding protein (Ter protein) M478_941 PF07690 Major Facilitator Superfamily M478_942 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M478_942 PF03466 LysR substrate binding domain M478_943 PF00480 ROK family M478_946 PF00654 Voltage gated chloride channel M478_947 PF00356 Bacterial regulatory proteins, lacI family M478_949 PF13407 Periplasmic binding protein domain M478_95 PF01730 UreF M478_950 PF09084 NMT1/THI5 like M478_951 PF00528 Binding-protein-dependent transport system inner membrane component M478_952 PF00005 ABC transporter M478_953 PF10423 Bacterial AMP nucleoside phosphorylase N-terminus M478_953 PF01048 Phosphorylase superfamily M478_958 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain M478_958 PF00205 Thiamine pyrophosphate enzyme, central domain M478_958 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain M478_959 PF01842 ACT domain M478_96 PF02492 CobW/HypB/UreG, nucleotide-binding domain M478_960 PF13419 Haloacid dehalogenase-like hydrolase M478_962 PF00245 Alkaline phosphatase M478_963 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain M478_963 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain M478_964 PF00027 Cyclic nucleotide-binding domain M478_964 PF13545 Crp-like helix-turn-helix domain M478_965 PF00582 Universal stress protein family M478_966 PF02233 NAD(P) transhydrogenase beta subunit M478_967 PF05222 Alanine dehydrogenase/PNT, N-terminal domain M478_967 PF01262 Alanine dehydrogenase/PNT, C-terminal domain M478_967 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch M478_968 PF07338 Protein of unknown function (DUF1471) M478_969 PF13520 Amino acid permease M478_97 PF01774 UreD urease accessory protein M478_971 PF00072 Response regulator receiver domain M478_971 PF00486 Transcriptional regulatory protein, C terminal M478_972 PF00672 HAMP domain M478_972 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M478_972 PF00512 His Kinase A (phospho-acceptor) domain M478_973 PF02074 Carboxypeptidase Taq (M32) metallopeptidase M478_974 PF01797 Transposase IS200 like M478_979 PF01695 IstB-like ATP binding protein M478_98 PF03253 Urea transporter M478_980 PF00265 Thymidine kinase M478_981 PF00816 H-NS histone family M478_982 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain M478_982 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain M478_982 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain M478_983 PF00072 Response regulator receiver domain M478_984 PF02810 SEC-C motif M478_985 PF00872 Transposase, Mutator family M478_986 PF01842 ACT domain M478_986 PF00551 Formyl transferase M478_99 PF03824 High-affinity nickel-transport protein M478_990 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M478_990 PF03466 LysR substrate binding domain M478_991 PF03372 Endonuclease/Exonuclease/phosphatase family M478_992 PF00293 NUDIX domain M478_993 PF07383 Protein of unknown function (DUF1496) M478_994 PF01131 DNA topoisomerase M478_994 PF01751 Toprim domain M478_995 PF02769 AIR synthase related protein, C-terminal domain M478_995 PF00586 AIR synthase related protein, N-terminal domain M478_996 PF00881 Nitroreductase family M478_997 PF01343 Peptidase family S49 M478_998 PF17763 Glutaminase/Asparaginase C-terminal domain M478_998 PF00710 Asparaginase, N-terminal M478_999 PF00857 Isochorismatase family