M478_1002 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain M478_1005 SM00763 PrkA AAA domain M478_1013 SM00345 helix_turn_helix gluconate operon transcriptional repressor M478_1025 SM00060 Fibronectin type 3 domain M478_1031 SM01040 BRO family, N-terminal domain M478_1035 SM00232 JAB/MPN domain M478_1040 SM00635 Bacterial Ig-like domain 2 M478_1046 SM00635 Bacterial Ig-like domain 2 M478_1064 SM01040 BRO family, N-terminal domain M478_107 SM00342 helix_turn_helix, arabinose operon control protein M478_1070 SM00382 ATPases associated with a variety of cellular activities M478_1080 SM00341 Helicase and RNase D C-terminal M478_1080 SM00474 3'-5' exonuclease M478_1084 SM00487 DEAD-like helicases superfamily M478_1084 SM00491 M478_1084 M478_1094 SM00257 Lysin motif M478_1096 SM00382 ATPases associated with a variety of cellular activities M478_1098 SM00382 ATPases associated with a variety of cellular activities M478_1099 SM00278 Helix-hairpin-helix DNA-binding motif class 1 M478_11 SM00382 ATPases associated with a variety of cellular activities M478_1110 SM00836 DALR anticodon binding domain M478_1110 SM01016 Arginyl tRNA synthetase N terminal dom M478_1111 SM00912 haemagglutination activity domain M478_1119 SM00481 DNA polymerase alpha chain like domain M478_1124 SM01321 M478_1124 M478_1137 SM00937 M478_1137 M478_1141 SM01400 M478_1141 M478_1147 SM00450 Rhodanese Homology Domain M478_1154 SM00448 cheY-homologous receiver domain M478_1154 SM00862 Transcriptional regulatory protein, C terminal M478_1155 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain M478_1155 SM00387 Histidine kinase-like ATPases M478_1155 SM00388 His Kinase A (phosphoacceptor) domain M478_116 SM00448 cheY-homologous receiver domain M478_116 SM00862 Transcriptional regulatory protein, C terminal M478_1166 SM00671 Sel1-like repeats. M478_1168 SM00671 Sel1-like repeats. M478_117 SM00387 Histidine kinase-like ATPases M478_117 SM00388 His Kinase A (phosphoacceptor) domain M478_1184 SM00345 helix_turn_helix gluconate operon transcriptional repressor M478_1184 SM00866 M478_1184 M478_1187 SM00382 ATPases associated with a variety of cellular activities M478_1192 SM00382 ATPases associated with a variety of cellular activities M478_1197 SM00345 helix_turn_helix gluconate operon transcriptional repressor M478_1197 SM00866 M478_1197 M478_1226 SM00278 Helix-hairpin-helix DNA-binding motif class 1 M478_1226 SM00465 GIY-YIG type nucleases (URI domain) M478_1227 SM00421 helix_turn_helix, Lux Regulon M478_1227 SM00448 cheY-homologous receiver domain M478_1244 SM00382 ATPases associated with a variety of cellular activities M478_1246 SM00062 Bacterial periplasmic substrate-binding proteins M478_1246 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. M478_1254 SM00342 helix_turn_helix, arabinose operon control protein M478_1257 SM00478 endonuclease III M478_1264 SM00382 ATPases associated with a variety of cellular activities M478_127 SM00796 Allophanate hydrolase subunit 1 M478_1278 SM00382 ATPases associated with a variety of cellular activities M478_128 SM00797 Allophanate hydrolase subunit 2 M478_1281 SM01007 Class II Aldolase and Adducin N-terminal domain M478_1285 SM00047 Lysozyme subfamily 2 M478_1294 SM00858 M478_1294 M478_1297 SM00634 Bacterial Ig-like domain (group 1) M478_1298 SM01321 M478_1298 M478_1313 SM01022 M478_1313 M478_1315 SM00487 DEAD-like helicases superfamily M478_1315 SM00490 helicase superfamily c-terminal domain M478_1321 SM00903 Flavin reductase like domain M478_1331 SM00347 helix_turn_helix multiple antibiotic resistance protein M478_134 SM00986 Uracil DNA glycosylase superfamily M478_134 SM00987 UreE urease accessory protein, C-terminal domain M478_1340 SM00091 PAS domain M478_1341 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) M478_1341 SM00091 PAS domain M478_1341 SM00267 diguanylate cyclase M478_1345 SM00357 Cold shock protein domain M478_1355 SM00342 helix_turn_helix, arabinose operon control protein M478_1357 SM00382 ATPases associated with a variety of cellular activities M478_1358 SM00090 RIO-like kinase M478_1363 SM00382 ATPases associated with a variety of cellular activities M478_1366 SM00354 helix_turn _helix lactose operon repressor M478_1376 SM00421 helix_turn_helix, Lux Regulon M478_1376 SM00448 cheY-homologous receiver domain M478_138 SM00248 ankyrin repeats M478_1386 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain M478_1392 SM00634 Bacterial Ig-like domain (group 1) M478_1399 SM00382 ATPases associated with a variety of cellular activities M478_140 SM00487 DEAD-like helicases superfamily M478_140 SM00490 helicase superfamily c-terminal domain M478_1412 SM01350 M478_1412 M478_1421 SM00382 ATPases associated with a variety of cellular activities M478_1423 SM01006 Siderophore biosynthesis protein domain M478_1427 SM01091 Transporter associated domain M478_1433 SM01321 M478_1433 M478_1441 SM00919 Malic enzyme, NAD binding domain M478_1441 SM01274 M478_1441 M478_1444 SM00382 ATPases associated with a variety of cellular activities M478_1450 SM00829 Enoylreductase M478_1455 SM00382 ATPases associated with a variety of cellular activities M478_1457 SM00852 Probable molybdopterin binding domain M478_1461 SM00382 ATPases associated with a variety of cellular activities M478_1481 SM00382 ATPases associated with a variety of cellular activities M478_1481 SM01086 C-terminal, D2-small domain, of ClpB protein M478_1489 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. M478_1497 SM00825 Beta-ketoacyl synthase M478_150 SM00358 Double-stranded RNA binding motif M478_150 SM00535 Ribonuclease III family M478_1509 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase M478_1510 SM00992 Hemimethylated DNA-binding protein YccV like M478_1511 SM00881 CoA binding domain M478_1513 SM00851 MGS-like domain M478_1520 SM01321 M478_1520 M478_1527 SM00382 ATPases associated with a variety of cellular activities M478_1528 SM00825 Beta-ketoacyl synthase M478_1529 SM01321 M478_1529 M478_1533 SM00382 ATPases associated with a variety of cellular activities M478_1534 SM00981 M478_1534 M478_1543 SM00849 Metallo-beta-lactamase superfamily M478_1546 SM01321 M478_1546 M478_155 SM01321 M478_155 M478_1554 SM00357 Cold shock protein domain M478_1555 SM01150 M478_1555 M478_1557 SM00382 ATPases associated with a variety of cellular activities M478_1558 SM00849 Metallo-beta-lactamase superfamily M478_1559 SM00411 bacterial (prokaryotic) histone like domain M478_1561 SM00316 Ribosomal protein S1-like RNA-binding domain M478_1567 SM00870 M478_1567 M478_1575 SM00382 ATPases associated with a variety of cellular activities M478_1578 SM00382 ATPases associated with a variety of cellular activities M478_1581 SM00843 M478_1581 M478_1582 SM00344 helix_turn_helix ASNC type M478_1584 SM00382 ATPases associated with a variety of cellular activities M478_1585 SM00382 ATPases associated with a variety of cellular activities M478_1587 SM00316 Ribosomal protein S1-like RNA-binding domain M478_1588 SM01321 M478_1588 M478_1589 SM00382 ATPases associated with a variety of cellular activities M478_1589 SM01086 C-terminal, D2-small domain, of ClpB protein M478_1591 SM00357 Cold shock protein domain M478_1592 SM00382 ATPases associated with a variety of cellular activities M478_16 SM00421 helix_turn_helix, Lux Regulon M478_1604 SM00830 Chorismate mutase type II M478_1605 SM00382 ATPases associated with a variety of cellular activities M478_1606 SM00062 Bacterial periplasmic substrate-binding proteins M478_1606 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. M478_161 SM00062 Bacterial periplasmic substrate-binding proteins M478_1612 SM00382 ATPases associated with a variety of cellular activities M478_1616 SM00244 prohibitin homologues M478_1618 SM00062 Bacterial periplasmic substrate-binding proteins M478_1618 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. M478_162 SM01211 M478_162 M478_1623 SM00382 ATPases associated with a variety of cellular activities M478_1630 SM00014 Acid phosphatase homologues M478_1631 SM01133 M478_1631 M478_1632 SM00420 helix_turn_helix, Deoxyribose operon repressor M478_1632 SM01134 M478_1632 M478_1634 SM00936 Penicillin-binding protein 5, C-terminal domain M478_1636 SM00382 ATPases associated with a variety of cellular activities M478_1636 SM00930 M478_1636 M478_1643 SM00382 ATPases associated with a variety of cellular activities M478_1650 SM00518 AP endonuclease family 2 M478_1655 SM00862 Transcriptional regulatory protein, C terminal M478_166 SM01321 M478_166 M478_1661 SM00382 ATPases associated with a variety of cellular activities M478_167 SM00387 Histidine kinase-like ATPases M478_167 SM00388 His Kinase A (phosphoacceptor) domain M478_1671 SM00841 Elongation factor P, C-terminal M478_1671 SM01185 M478_1671 M478_1674 SM00345 helix_turn_helix gluconate operon transcriptional repressor M478_1674 SM00895 M478_1674 M478_1676 SM00833 Cobalamin synthesis protein cobW C-terminal domain M478_1677 SM00014 Acid phosphatase homologues M478_1680 SM00052 Putative diguanylate phosphodiesterase M478_1684 SM00382 ATPases associated with a variety of cellular activities M478_1687 SM00363 S4 RNA-binding domain M478_1688 SM00487 DEAD-like helicases superfamily M478_1688 SM00490 helicase superfamily c-terminal domain M478_169 SM00382 ATPases associated with a variety of cellular activities M478_169 SM00448 cheY-homologous receiver domain M478_1690 SM01321 M478_1690 M478_171 SM00938 Nitrogen regulatory protein P-II M478_1719 SM00420 helix_turn_helix, Deoxyribose operon repressor M478_1719 SM01134 M478_1719 M478_1720 SM01007 Class II Aldolase and Adducin N-terminal domain M478_1723 SM00530 Helix-turn-helix XRE-family like proteins M478_1726 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). M478_1726 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain M478_1732 SM01321 M478_1732 M478_1738 SM00421 helix_turn_helix, Lux Regulon M478_1738 SM00448 cheY-homologous receiver domain M478_1739 SM00387 Histidine kinase-like ATPases M478_1739 SM00388 His Kinase A (phosphoacceptor) domain M478_1739 SM00448 cheY-homologous receiver domain M478_1740 SM00434 DNA Topoisomerase IV M478_1746 SM00852 Probable molybdopterin binding domain M478_1749 SM01060 M478_1749 M478_175 SM00382 ATPases associated with a variety of cellular activities M478_1750 SM00487 DEAD-like helicases superfamily M478_1750 SM00488 M478_1750 M478_1750 SM00491 M478_1750 M478_1757 SM00382 ATPases associated with a variety of cellular activities M478_1761 SM00450 Rhodanese Homology Domain M478_1764 SM00382 ATPases associated with a variety of cellular activities M478_1773 SM00382 ATPases associated with a variety of cellular activities M478_1776 SM00507 HNH nucleases M478_1777 SM01118 M478_1777 M478_1783 SM01321 M478_1783 M478_1788 SM00729 Elongator protein 3, MiaB family, Radical SAM M478_1792 SM00487 DEAD-like helicases superfamily M478_1792 SM00490 helicase superfamily c-terminal domain M478_1793 SM00382 ATPases associated with a variety of cellular activities M478_1797 SM00729 Elongator protein 3, MiaB family, Radical SAM M478_1797 SM00876 Biotin and Thiamin Synthesis associated domain M478_18 SM00357 Cold shock protein domain M478_1801 SM00382 ATPases associated with a variety of cellular activities M478_1806 SM00382 ATPases associated with a variety of cellular activities M478_1815 SM00855 Phosphoglycerate mutase family M478_1835 SM00881 CoA binding domain M478_1838 SM00861 Transketolase, pyrimidine binding domain M478_1851 SM01321 M478_1851 M478_1858 SM00778 Zinc-binding domain of primase-helicase M478_1865 SM00382 ATPases associated with a variety of cellular activities M478_1870 SM00479 M478_1870 M478_1873 SM00849 Metallo-beta-lactamase superfamily M478_1874 SM00257 Lysin motif M478_1884 SM00382 ATPases associated with a variety of cellular activities M478_1884 SM00930 M478_1884 M478_189 SM00271 DnaJ molecular chaperone homology domain M478_1892 SM01322 M478_1892 M478_1896 SM00977 TilS substrate C-terminal domain M478_1899 SM00481 DNA polymerase alpha chain like domain M478_1905 SM00935 Outer membrane protein (OmpH-like) M478_1907 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. M478_1916 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. M478_1922 SM01321 M478_1922 M478_1928 SM00382 ATPases associated with a variety of cellular activities M478_1929 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs M478_1929 SM00475 5'-3' exonuclease M478_1937 SM00925 MltA specific insert domain M478_1940 SM00646 M478_1940 M478_1953 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. M478_1955 SM00927 DNA mismatch repair enzyme MutH M478_1960 SM00563 Phosphate acyltransferases M478_1963 SM00354 helix_turn _helix lactose operon repressor M478_1967 SM00849 Metallo-beta-lactamase superfamily M478_1968 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). M478_1968 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain M478_1968 SM00319 Homologues of the ligand binding domain of Tar M478_197 SM00869 Autotransporter beta-domain M478_1971 SM00862 Transcriptional regulatory protein, C terminal M478_198 SM00247 Beta/gamma crystallins M478_1983 SM00382 ATPases associated with a variety of cellular activities M478_1987 SM00947 Carbonic anhydrase M478_199 SM00562 M478_199 M478_1990 SM00869 Autotransporter beta-domain M478_1992 SM00382 ATPases associated with a variety of cellular activities M478_1994 SM00823 Phosphopantetheine attachment site M478_1994 SM00825 Beta-ketoacyl synthase M478_1998 SM00364 Leucine-rich repeats, bacterial type M478_1998 SM00369 Leucine-rich repeats, typical (most populated) subfamily M478_1999 SM00364 Leucine-rich repeats, bacterial type M478_2000 SM00364 Leucine-rich repeats, bacterial type M478_2001 SM00869 Autotransporter beta-domain M478_2007 SM00052 Putative diguanylate phosphodiesterase M478_2007 SM00091 PAS domain M478_2007 SM00267 diguanylate cyclase M478_201 SM00028 Tetratricopeptide repeats M478_2014 SM01006 Siderophore biosynthesis protein domain M478_202 SM00530 Helix-turn-helix XRE-family like proteins M478_2021 SM00421 helix_turn_helix, Lux Regulon M478_2034 SM00382 ATPases associated with a variety of cellular activities M478_2034 SM01086 C-terminal, D2-small domain, of ClpB protein M478_2049 SM00382 ATPases associated with a variety of cellular activities M478_2055 SM00478 endonuclease III M478_2055 SM00525 M478_2055 M478_206 SM00564 beta-propeller repeat M478_2062 SM00729 Elongator protein 3, MiaB family, Radical SAM M478_2064 SM01152 M478_2064 M478_2068 SM00382 ATPases associated with a variety of cellular activities M478_2071 SM00732 Likely ribonuclease with RNase H fold. M478_2076 SM00731 SprT homologues. M478_2082 SM00861 Transketolase, pyrimidine binding domain M478_2084 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain M478_2096 SM01011 Aminopeptidase P, N-terminal domain M478_21 SM00729 Elongator protein 3, MiaB family, Radical SAM M478_211 SM00116 Domain in cystathionine beta-synthase and other proteins. M478_211 SM01240 M478_211 M478_2110 SM00382 ATPases associated with a variety of cellular activities M478_2114 SM00448 cheY-homologous receiver domain M478_2114 SM00862 Transcriptional regulatory protein, C terminal M478_2115 SM00387 Histidine kinase-like ATPases M478_2115 SM00388 His Kinase A (phosphoacceptor) domain M478_2121 SM00937 M478_2121 M478_2127 SM00530 Helix-turn-helix XRE-family like proteins M478_2129 SM00530 Helix-turn-helix XRE-family like proteins M478_213 SM01321 M478_213 M478_2130 SM00778 Zinc-binding domain of primase-helicase M478_2130 SM00885 D5 N terminal like M478_2151 SM00382 ATPases associated with a variety of cellular activities M478_2152 SM00382 ATPases associated with a variety of cellular activities M478_2160 SM00354 helix_turn _helix lactose operon repressor M478_2163 SM00354 helix_turn _helix lactose operon repressor M478_2179 SM00420 helix_turn_helix, Deoxyribose operon repressor M478_2179 SM01134 M478_2179 M478_2185 SM00382 ATPases associated with a variety of cellular activities M478_2193 SM00382 ATPases associated with a variety of cellular activities M478_2194 SM00382 ATPases associated with a variety of cellular activities M478_2203 SM00869 Autotransporter beta-domain M478_2210 SM00354 helix_turn _helix lactose operon repressor M478_2215 SM00862 Transcriptional regulatory protein, C terminal M478_2229 SM00858 M478_2229 M478_2233 SM00382 ATPases associated with a variety of cellular activities M478_2238 SM00382 ATPases associated with a variety of cellular activities M478_2253 SM01321 M478_2253 M478_227 SM00046 Diacylglycerol kinase catalytic domain (presumed) M478_2272 SM00342 helix_turn_helix, arabinose operon control protein M478_2278 SM00563 Phosphate acyltransferases M478_2279 SM00434 DNA Topoisomerase IV M478_2282 SM00387 Histidine kinase-like ATPases M478_2282 SM00433 TopoisomeraseII M478_2298 SM01118 M478_2298 M478_2299 SM00287 Bacterial SH3 domain homologues M478_230 SM00448 cheY-homologous receiver domain M478_230 SM00862 Transcriptional regulatory protein, C terminal M478_2300 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. M478_2302 SM00905 Dihydroneopterin aldolase M478_2303 SM01207 M478_2303 M478_2306 SM00400 zinc finger M478_2306 SM00493 M478_2306 M478_2306 SM00766 DNA primase DnaG DnaB-binding M478_231 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain M478_231 SM00388 His Kinase A (phosphoacceptor) domain M478_2332 SM01217 M478_2332 M478_2337 SM00354 helix_turn _helix lactose operon repressor M478_2339 SM00382 ATPases associated with a variety of cellular activities M478_2348 SM00912 haemagglutination activity domain M478_2350 SM00327 von Willebrand factor (vWF) type A domain M478_2352 SM00327 von Willebrand factor (vWF) type A domain M478_2353 SM00327 von Willebrand factor (vWF) type A domain M478_2355 SM00220 Serine/Threonine protein kinases, catalytic domain M478_2359 SM00869 Autotransporter beta-domain M478_236 SM00382 ATPases associated with a variety of cellular activities M478_2364 SM01321 M478_2364 M478_2366 SM00858 M478_2366 M478_237 SM00345 helix_turn_helix gluconate operon transcriptional repressor M478_2370 SM00345 helix_turn_helix gluconate operon transcriptional repressor M478_2370 SM00895 M478_2370 M478_2381 SM00382 ATPases associated with a variety of cellular activities M478_2383 SM00957 SecA DEAD-like domain M478_2383 SM00958 SecA preprotein cross-linking domain M478_2387 SM00864 Tubulin/FtsZ family, GTPase domain M478_2387 SM00865 Tubulin/FtsZ family, C-terminal domain M478_2388 SM00842 Cell division protein FtsA M478_24 SM00936 Penicillin-binding protein 5, C-terminal domain M478_2403 SM00354 helix_turn _helix lactose operon repressor M478_2404 SM01321 M478_2404 M478_2410 SM01321 M478_2410 M478_2412 SM00382 ATPases associated with a variety of cellular activities M478_2414 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain M478_2415 SM00851 MGS-like domain M478_2415 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain M478_2424 SM00650 Ribosomal RNA adenine dimethylases M478_2428 SM00271 DnaJ molecular chaperone homology domain M478_243 SM00924 MgtE intracellular N domain M478_2438 SM00382 ATPases associated with a variety of cellular activities M478_2438 SM01086 C-terminal, D2-small domain, of ClpB protein M478_2449 SM00487 DEAD-like helicases superfamily M478_2449 SM00490 helicase superfamily c-terminal domain M478_2450 SM00486 DNA polymerase type-B family M478_2452 SM00382 ATPases associated with a variety of cellular activities M478_2460 SM01329 M478_2460 M478_2461 SM00917 LeuA allosteric (dimerisation) domain M478_2462 SM01321 M478_2462 M478_2467 SM00904 Riboflavin kinase M478_2471 SM00271 DnaJ molecular chaperone homology domain M478_2476 SM00852 Probable molybdopterin binding domain M478_248 SM00382 ATPases associated with a variety of cellular activities M478_2484 SM00448 cheY-homologous receiver domain M478_2484 SM00862 Transcriptional regulatory protein, C terminal M478_2487 SM00855 Phosphoglycerate mutase family M478_2488 SM00342 helix_turn_helix, arabinose operon control protein M478_2488 SM00871 Bacterial transcription activator, effector binding domain M478_2492 SM00831 Cation transporter/ATPase, N-terminus M478_2494 SM00267 diguanylate cyclase M478_2497 SM00382 ATPases associated with a variety of cellular activities M478_2499 SM00530 Helix-turn-helix XRE-family like proteins M478_2500 SM00382 ATPases associated with a variety of cellular activities M478_2505 SM00941 Pyrimidine nucleoside phosphorylase C-terminal domain M478_2507 SM01133 M478_2507 M478_2512 SM00749 bacterial OsmY and nodulation domain M478_2519 SM00267 diguanylate cyclase M478_2530 SM00382 ATPases associated with a variety of cellular activities M478_2534 SM01133 M478_2534 M478_2540 SM00342 helix_turn_helix, arabinose operon control protein M478_255 SM01321 M478_255 M478_2555 SM00382 ATPases associated with a variety of cellular activities M478_2558 SM00382 ATPases associated with a variety of cellular activities M478_2563 SM01230 M478_2563 M478_2564 SM00091 PAS domain M478_2564 SM00387 Histidine kinase-like ATPases M478_2564 SM00388 His Kinase A (phosphoacceptor) domain M478_2565 SM00382 ATPases associated with a variety of cellular activities M478_2565 SM00448 cheY-homologous receiver domain M478_2566 SM00729 Elongator protein 3, MiaB family, Radical SAM M478_2569 SM01321 M478_2569 M478_2570 SM01321 M478_2570 M478_2571 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs M478_2571 SM00474 3'-5' exonuclease M478_2571 SM00475 5'-3' exonuclease M478_2571 SM00482 DNA polymerase A domain M478_2584 SM00798 AICARFT/IMPCHase bienzyme M478_2584 SM00851 MGS-like domain M478_2585 SM01209 M478_2585 M478_2585 SM01210 M478_2585 M478_2587 SM00411 bacterial (prokaryotic) histone like domain M478_2599 SM00876 Biotin and Thiamin Synthesis associated domain M478_2600 SM01321 M478_2600 M478_2601 SM00663 RNA polymerase I subunit A N-terminus M478_2607 SM00649 Ribosomal protein L11/L12 M478_2608 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. M478_2608 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. M478_2615 SM00382 ATPases associated with a variety of cellular activities M478_2629 SM01321 M478_2629 M478_2636 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. M478_2636 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. M478_2637 SM01004 Delta-aminolevulinic acid dehydratase M478_2639 SM00382 ATPases associated with a variety of cellular activities M478_264 SM01130 M478_264 M478_266 SM01321 M478_266 M478_2660 SM00382 ATPases associated with a variety of cellular activities M478_2671 SM00382 ATPases associated with a variety of cellular activities M478_2672 SM00382 ATPases associated with a variety of cellular activities M478_2677 SM01321 M478_2677 M478_2680 SM00382 ATPases associated with a variety of cellular activities M478_2681 SM00382 ATPases associated with a variety of cellular activities M478_2681 SM00962 SRP54-type protein, GTPase domain M478_2681 SM00963 SRP54-type protein, helical bundle domain M478_2700 SM00341 Helicase and RNase D C-terminal M478_2700 SM00487 DEAD-like helicases superfamily M478_2700 SM00490 helicase superfamily c-terminal domain M478_2700 SM00956 M478_2700 M478_2714 SM01219 M478_2714 M478_2735 SM00984 UDP binding domain M478_2739 SM00357 Cold shock protein domain M478_2739 SM00382 ATPases associated with a variety of cellular activities M478_2739 SM00959 Rho termination factor, N-terminal domain M478_2741 SM00487 DEAD-like helicases superfamily M478_2741 SM00490 helicase superfamily c-terminal domain M478_2754 SM00507 HNH nucleases M478_2770 SM00382 ATPases associated with a variety of cellular activities M478_2775 SM00382 ATPases associated with a variety of cellular activities M478_278 SM00382 ATPases associated with a variety of cellular activities M478_2794 SM00382 ATPases associated with a variety of cellular activities M478_2800 SM00859 Semialdehyde dehydrogenase, NAD binding domain M478_2811 SM00487 DEAD-like helicases superfamily M478_2811 SM00490 helicase superfamily c-terminal domain M478_2813 SM00354 helix_turn _helix lactose operon repressor M478_2816 SM00382 ATPases associated with a variety of cellular activities M478_2816 SM01086 C-terminal, D2-small domain, of ClpB protein M478_2822 SM00382 ATPases associated with a variety of cellular activities M478_2828 SM01321 M478_2828 M478_2848 SM00448 cheY-homologous receiver domain M478_2848 SM00862 Transcriptional regulatory protein, C terminal M478_2849 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain M478_2849 SM00387 Histidine kinase-like ATPases M478_2849 SM00388 His Kinase A (phosphoacceptor) domain M478_285 SM00421 helix_turn_helix, Lux Regulon M478_285 SM00448 cheY-homologous receiver domain M478_2850 SM00342 helix_turn_helix, arabinose operon control protein M478_2852 SM00971 Serine acetyltransferase, N-terminal M478_2856 SM00450 Rhodanese Homology Domain M478_2861 SM00829 Enoylreductase M478_2869 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain M478_2869 SM01232 M478_2869 M478_2880 SM00532 Ligase N family M478_2881 SM00072 Guanylate kinase homologues. M478_2882 SM01409 M478_2882 M478_2883 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. M478_2883 SM00954 Region found in RelA / SpoT proteins M478_2885 SM00487 DEAD-like helicases superfamily M478_2885 SM00490 helicase superfamily c-terminal domain M478_2891 SM00382 ATPases associated with a variety of cellular activities M478_2899 SM00749 bacterial OsmY and nodulation domain M478_2902 SM00073 Histidine Phosphotransfer domain M478_2902 SM00091 PAS domain M478_2902 SM00387 Histidine kinase-like ATPases M478_2902 SM00388 His Kinase A (phosphoacceptor) domain M478_2902 SM00448 cheY-homologous receiver domain M478_2903 SM00729 Elongator protein 3, MiaB family, Radical SAM M478_2913 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. M478_2914 SM01321 M478_2914 M478_2915 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. M478_2922 SM00382 ATPases associated with a variety of cellular activities M478_2924 SM00116 Domain in cystathionine beta-synthase and other proteins. M478_2928 SM00382 ATPases associated with a variety of cellular activities M478_293 SM00919 Malic enzyme, NAD binding domain M478_293 SM01274 M478_293 M478_2938 SM00354 helix_turn _helix lactose operon repressor M478_2940 SM00642 Alpha-amylase domain M478_2966 SM00316 Ribosomal protein S1-like RNA-binding domain M478_2971 SM00052 Putative diguanylate phosphodiesterase M478_2971 SM00267 diguanylate cyclase M478_2972 SM00829 Enoylreductase M478_2977 SM00878 Biotin carboxylase C-terminal domain M478_2985 SM00345 helix_turn_helix gluconate operon transcriptional repressor M478_2985 SM00895 M478_2985 M478_2989 SM00849 Metallo-beta-lactamase superfamily M478_299 SM00869 Autotransporter beta-domain M478_2991 SM00357 Cold shock protein domain M478_2992 SM00357 Cold shock protein domain M478_2993 SM01321 M478_2993 M478_3001 SM00382 ATPases associated with a variety of cellular activities M478_3008 SM00382 ATPases associated with a variety of cellular activities M478_3011 SM00062 Bacterial periplasmic substrate-binding proteins M478_3013 SM01133 M478_3013 M478_3016 SM00342 helix_turn_helix, arabinose operon control protein M478_3024 SM00530 Helix-turn-helix XRE-family like proteins M478_3027 SM00860 SMI1 / KNR4 family M478_303 SM01130 M478_303 M478_3039 SM00382 ATPases associated with a variety of cellular activities M478_3039 SM01086 C-terminal, D2-small domain, of ClpB protein M478_3049 SM00382 ATPases associated with a variety of cellular activities M478_305 SM00364 Leucine-rich repeats, bacterial type M478_305 SM00369 Leucine-rich repeats, typical (most populated) subfamily M478_3058 SM00382 ATPases associated with a variety of cellular activities M478_3068 SM00912 haemagglutination activity domain M478_3069 SM01018 B12 binding domain M478_3070 SM00346 helix_turn_helix isocitrate lyase regulation M478_3084 SM00345 helix_turn_helix gluconate operon transcriptional repressor M478_3084 SM00895 M478_3084 M478_3090 SM00382 ATPases associated with a variety of cellular activities M478_3091 SM00327 von Willebrand factor (vWF) type A domain M478_3093 SM00344 helix_turn_helix ASNC type M478_3095 SM01228 M478_3095 M478_3104 SM00382 ATPases associated with a variety of cellular activities M478_3111 SM00382 ATPases associated with a variety of cellular activities M478_3114 SM00062 Bacterial periplasmic substrate-binding proteins M478_3124 SM01234 M478_3124 M478_3128 SM00382 ATPases associated with a variety of cellular activities M478_3128 SM00760 Bacterial dnaA protein helix-turn-helix domain M478_3129 SM00480 DNA polymerase III beta subunit M478_313 SM00382 ATPases associated with a variety of cellular activities M478_3131 SM00387 Histidine kinase-like ATPases M478_3131 SM00433 TopoisomeraseII M478_3146 SM00642 Alpha-amylase domain M478_316 SM00448 cheY-homologous receiver domain M478_316 SM00862 Transcriptional regulatory protein, C terminal M478_3164 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). M478_3164 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain M478_3164 SM01358 M478_3164 M478_3167 SM00926 Molybdopterin oxidoreductase Fe4S4 domain M478_317 SM00387 Histidine kinase-like ATPases M478_317 SM00388 His Kinase A (phosphoacceptor) domain M478_318 SM00327 von Willebrand factor (vWF) type A domain M478_3191 SM00382 ATPases associated with a variety of cellular activities M478_3193 SM00342 helix_turn_helix, arabinose operon control protein M478_3200 SM00530 Helix-turn-helix XRE-family like proteins M478_3202 SM00382 ATPases associated with a variety of cellular activities M478_3216 SM00421 helix_turn_helix, Lux Regulon M478_3216 SM00448 cheY-homologous receiver domain M478_3219 SM00382 ATPases associated with a variety of cellular activities M478_3232 SM00422 helix_turn_helix, mercury resistance M478_3234 SM00662 RNA polymerases D M478_3235 SM00363 S4 RNA-binding domain M478_3235 SM01390 M478_3235 M478_324 SM00450 Rhodanese Homology Domain M478_3248 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. M478_3249 SM01374 M478_3249 M478_325 SM00382 ATPases associated with a variety of cellular activities M478_3253 SM00322 K homology RNA-binding domain M478_3256 SM01382 M478_3256 M478_3256 SM01383 M478_3256 M478_3260 SM01403 M478_3260 M478_3263 SM01321 M478_3263 M478_3265 SM00838 Elongation factor G C-terminus M478_3265 SM00889 Elongation factor G, domain IV M478_327 SM00448 cheY-homologous receiver domain M478_327 SM00862 Transcriptional regulatory protein, C terminal M478_3279 SM00382 ATPases associated with a variety of cellular activities M478_328 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain M478_328 SM00387 Histidine kinase-like ATPases M478_328 SM00388 His Kinase A (phosphoacceptor) domain M478_3284 SM00382 ATPases associated with a variety of cellular activities M478_3285 SM00062 Bacterial periplasmic substrate-binding proteins M478_3292 SM00100 Cyclic nucleotide-monophosphate binding domain M478_3292 SM00419 helix_turn_helix, cAMP Regulatory protein M478_3299 SM00354 helix_turn _helix lactose operon repressor M478_330 SM01321 M478_330 M478_3324 SM00363 S4 RNA-binding domain M478_3327 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain M478_3327 SM00387 Histidine kinase-like ATPases M478_3327 SM00388 His Kinase A (phosphoacceptor) domain M478_3328 SM00448 cheY-homologous receiver domain M478_3328 SM00862 Transcriptional regulatory protein, C terminal M478_3330 SM00316 Ribosomal protein S1-like RNA-binding domain M478_3330 SM00732 Likely ribonuclease with RNase H fold. M478_3331 SM00899 M478_3331 M478_3341 SM00421 helix_turn_helix, Lux Regulon M478_3342 SM00450 Rhodanese Homology Domain M478_3344 SM00420 helix_turn_helix, Deoxyribose operon repressor M478_3344 SM01134 M478_3344 M478_3353 SM00642 Alpha-amylase domain M478_3354 SM00642 Alpha-amylase domain M478_3356 SM00257 Lysin motif M478_3356 SM00634 Bacterial Ig-like domain (group 1) M478_336 SM00771 ZipA, C-terminal domain (FtsZ-binding) M478_3361 SM00859 Semialdehyde dehydrogenase, NAD binding domain M478_3368 SM00354 helix_turn _helix lactose operon repressor M478_337 SM00278 Helix-hairpin-helix DNA-binding motif class 1 M478_337 SM00292 breast cancer carboxy-terminal domain M478_337 SM00532 Ligase N family M478_3371 SM00448 cheY-homologous receiver domain M478_3371 SM00862 Transcriptional regulatory protein, C terminal M478_3377 SM00382 ATPases associated with a variety of cellular activities M478_3378 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain M478_3378 SM00387 Histidine kinase-like ATPases M478_3378 SM00388 His Kinase A (phosphoacceptor) domain M478_3378 SM00448 cheY-homologous receiver domain M478_3381 SM01321 M478_3381 M478_3384 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase M478_3385 SM00235 Zinc-dependent metalloprotease M478_3396 SM00869 Autotransporter beta-domain M478_3400 SM00052 Putative diguanylate phosphodiesterase M478_3409 SM00052 Putative diguanylate phosphodiesterase M478_3409 SM00267 diguanylate cyclase M478_3411 SM00382 ATPases associated with a variety of cellular activities M478_3412 SM00382 ATPases associated with a variety of cellular activities M478_3418 SM00912 haemagglutination activity domain M478_3422 SM00387 Histidine kinase-like ATPases M478_3423 SM00382 ATPases associated with a variety of cellular activities M478_3432 SM00421 helix_turn_helix, Lux Regulon M478_3432 SM00448 cheY-homologous receiver domain M478_3433 SM00387 Histidine kinase-like ATPases M478_3433 SM00388 His Kinase A (phosphoacceptor) domain M478_3433 SM00448 cheY-homologous receiver domain M478_3437 SM00342 helix_turn_helix, arabinose operon control protein M478_344 SM01321 M478_344 M478_3446 SM00382 ATPases associated with a variety of cellular activities M478_3459 SM00382 ATPases associated with a variety of cellular activities M478_3466 SM00729 Elongator protein 3, MiaB family, Radical SAM M478_3485 SM00060 Fibronectin type 3 domain M478_3486 SM00869 Autotransporter beta-domain M478_3489 SM00563 Phosphate acyltransferases M478_3495 SM00829 Enoylreductase M478_3496 SM00382 ATPases associated with a variety of cellular activities M478_3497 SM01005 Alanine racemase, C-terminal domain M478_35 SM00382 ATPases associated with a variety of cellular activities M478_3504 SM01007 Class II Aldolase and Adducin N-terminal domain M478_3509 SM00342 helix_turn_helix, arabinose operon control protein M478_3510 SM00342 helix_turn_helix, arabinose operon control protein M478_3514 SM01276 M478_3514 M478_3520 SM00926 Molybdopterin oxidoreductase Fe4S4 domain M478_3526 SM00883 Chaperonin 10 Kd subunit M478_3530 SM00841 Elongation factor P, C-terminal M478_3530 SM01185 M478_3530 M478_3540 SM00479 M478_3540 M478_3547 SM00257 Lysin motif M478_3547 SM00646 M478_3547 M478_3548 SM00853 MutL C terminal dimerisation domain M478_3548 SM01340 M478_3548 M478_3552 SM00244 prohibitin homologues M478_3553 SM00244 prohibitin homologues M478_3555 SM00788 Adenylosuccinate synthetase M478_3557 SM00316 Ribosomal protein S1-like RNA-binding domain M478_3557 SM00357 Cold shock protein domain M478_3557 SM00955 M478_3557 M478_3558 SM00967 RNA 2'-O ribose methyltransferase substrate binding M478_3562 SM00382 ATPases associated with a variety of cellular activities M478_3569 SM01321 M478_3569 M478_3578 SM00116 Domain in cystathionine beta-synthase and other proteins. M478_3578 SM01091 Transporter associated domain M478_3596 SM00387 Histidine kinase-like ATPases M478_3596 SM00388 His Kinase A (phosphoacceptor) domain M478_3597 SM00448 cheY-homologous receiver domain M478_3597 SM00862 Transcriptional regulatory protein, C terminal M478_3600 SM01103 M478_3600 M478_3602 SM00382 ATPases associated with a variety of cellular activities M478_3609 SM00316 Ribosomal protein S1-like RNA-binding domain M478_3609 SM00322 K homology RNA-binding domain M478_3613 SM01387 M478_3613 M478_3616 SM00316 Ribosomal protein S1-like RNA-binding domain M478_3616 SM00322 K homology RNA-binding domain M478_3617 SM00028 Tetratricopeptide repeats M478_3618 SM00487 DEAD-like helicases superfamily M478_3618 SM00490 helicase superfamily c-terminal domain M478_3620 SM00530 Helix-turn-helix XRE-family like proteins M478_3636 SM00382 ATPases associated with a variety of cellular activities M478_3639 SM00859 Semialdehyde dehydrogenase, NAD binding domain M478_3640 SM00849 Metallo-beta-lactamase superfamily M478_3641 SM00072 Guanylate kinase homologues. M478_3643 SM00382 ATPases associated with a variety of cellular activities M478_3644 SM00382 ATPases associated with a variety of cellular activities M478_3649 SM00345 helix_turn_helix gluconate operon transcriptional repressor M478_3649 SM00866 M478_3649 M478_3653 SM00382 ATPases associated with a variety of cellular activities M478_3654 SM00382 ATPases associated with a variety of cellular activities M478_367 SM00926 Molybdopterin oxidoreductase Fe4S4 domain M478_3672 SM00382 ATPases associated with a variety of cellular activities M478_3674 SM01321 M478_3674 M478_3678 SM01240 M478_3678 M478_3683 SM00644 M478_3683 M478_3686 SM00345 helix_turn_helix gluconate operon transcriptional repressor M478_3686 SM00895 M478_3686 M478_3690 SM01321 M478_3690 M478_3699 SM00947 Carbonic anhydrase M478_3700 SM00382 ATPases associated with a variety of cellular activities M478_371 SM00382 ATPases associated with a variety of cellular activities M478_3713 SM00487 DEAD-like helicases superfamily M478_3713 SM00490 helicase superfamily c-terminal domain M478_3713 SM00847 Helicase associated domain (HA2) Add an annotation M478_3715 SM00382 ATPases associated with a variety of cellular activities M478_3724 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. M478_3725 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. M478_3726 SM00073 Histidine Phosphotransfer domain M478_3726 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain M478_3726 SM00387 Histidine kinase-like ATPases M478_3726 SM00388 His Kinase A (phosphoacceptor) domain M478_3726 SM00448 cheY-homologous receiver domain M478_3727 SM00954 Region found in RelA / SpoT proteins M478_3730 SM01192 M478_3730 M478_3730 SM01193 M478_3730 M478_375 SM00421 helix_turn_helix, Lux Regulon M478_3753 SM00257 Lysin motif M478_3755 SM00533 DNA-binding domain of DNA mismatch repair MUTS family M478_3755 SM00534 ATPase domain of DNA mismatch repair MUTS family M478_3757 SM00829 Enoylreductase M478_3760 SM01120 M478_3760 M478_3763 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor M478_3765 SM00062 Bacterial periplasmic substrate-binding proteins M478_3766 SM01235 M478_3766 M478_3777 SM00382 ATPases associated with a variety of cellular activities M478_3778 SM01321 M478_3778 M478_3780 SM00420 helix_turn_helix, Deoxyribose operon repressor M478_3780 SM01134 M478_3780 M478_3781 SM01007 Class II Aldolase and Adducin N-terminal domain M478_3782 SM00926 Molybdopterin oxidoreductase Fe4S4 domain M478_3791 SM00382 ATPases associated with a variety of cellular activities M478_3794 SM00861 Transketolase, pyrimidine binding domain M478_38 SM00062 Bacterial periplasmic substrate-binding proteins M478_3800 SM00382 ATPases associated with a variety of cellular activities M478_3802 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain M478_3812 SM01321 M478_3812 M478_3813 SM01091 Transporter associated domain M478_3815 SM00382 ATPases associated with a variety of cellular activities M478_3815 SM00962 SRP54-type protein, GTPase domain M478_3815 SM00963 SRP54-type protein, helical bundle domain M478_3820 SM01321 M478_3820 M478_3825 SM00448 cheY-homologous receiver domain M478_3825 SM00850 LytTr DNA-binding domain M478_3827 SM00830 Chorismate mutase type II M478_3829 SM00382 ATPases associated with a variety of cellular activities M478_3833 SM00830 Chorismate mutase type II M478_3834 SM01321 M478_3834 M478_3837 SM00363 S4 RNA-binding domain M478_3839 SM00382 ATPases associated with a variety of cellular activities M478_3839 SM01086 C-terminal, D2-small domain, of ClpB protein M478_384 SM00382 ATPases associated with a variety of cellular activities M478_384 SM01086 C-terminal, D2-small domain, of ClpB protein M478_3847 SM00155 Phospholipase D. Active site motifs. M478_3848 SM00881 CoA binding domain M478_3849 SM01144 M478_3849 M478_3851 SM00967 RNA 2'-O ribose methyltransferase substrate binding M478_3854 SM00347 helix_turn_helix multiple antibiotic resistance protein M478_3862 SM00062 Bacterial periplasmic substrate-binding proteins M478_3865 SM00382 ATPases associated with a variety of cellular activities M478_3867 SM00382 ATPases associated with a variety of cellular activities M478_3874 SM00912 haemagglutination activity domain M478_3875 SM00710 Parallel beta-helix repeats M478_3884 SM00900 M478_3884 M478_3894 SM00089 Repeats in polycystic kidney disease 1 (PKD1) and other proteins M478_3899 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase M478_3911 SM00448 cheY-homologous receiver domain M478_3911 SM00862 Transcriptional regulatory protein, C terminal M478_3912 SM00091 PAS domain M478_3912 SM00387 Histidine kinase-like ATPases M478_3912 SM00388 His Kinase A (phosphoacceptor) domain M478_3915 SM01321 M478_3915 M478_3917 SM00642 Alpha-amylase domain M478_3925 SM01323 M478_3925 M478_3928 SM01321 M478_3928 M478_3937 SM01321 M478_3937 M478_3938 SM00861 Transketolase, pyrimidine binding domain M478_3941 SM00981 M478_3941 M478_3958 SM00382 ATPases associated with a variety of cellular activities M478_3958 SM00994 ClpX C4-type zinc finger M478_3958 SM01086 C-terminal, D2-small domain, of ClpB protein M478_3959 SM00382 ATPases associated with a variety of cellular activities M478_3959 SM00464 Found in ATP-dependent protease La (LON) M478_3960 SM00411 bacterial (prokaryotic) histone like domain M478_3968 SM00344 helix_turn_helix ASNC type M478_3969 SM00382 ATPases associated with a variety of cellular activities M478_3970 SM00382 ATPases associated with a variety of cellular activities M478_3971 SM00938 Nitrogen regulatory protein P-II M478_3989 SM00382 ATPases associated with a variety of cellular activities M478_399 SM00382 ATPases associated with a variety of cellular activities M478_3991 SM00493 M478_3991 M478_3992 SM00387 Histidine kinase-like ATPases M478_4 SM00382 ATPases associated with a variety of cellular activities M478_40 SM00116 Domain in cystathionine beta-synthase and other proteins. M478_40 SM01091 Transporter associated domain M478_4026 SM00422 helix_turn_helix, mercury resistance M478_4028 SM00244 prohibitin homologues M478_4030 SM00822 M478_4030 M478_4032 SM00382 ATPases associated with a variety of cellular activities M478_4035 SM01001 AIR carboxylase M478_4038 SM00840 M478_4038 M478_4050 SM00563 Phosphate acyltransferases M478_4052 SM00195 Dual specificity phosphatase, catalytic domain M478_4052 SM00404 Protein tyrosine phosphatase, catalytic domain motif M478_4055 SM00382 ATPases associated with a variety of cellular activities M478_4061 SM01217 M478_4061 M478_4067 SM00869 Autotransporter beta-domain M478_4078 SM01321 M478_4078 M478_4079 SM01359 M478_4079 M478_4079 SM01360 M478_4079 M478_4088 SM00062 Bacterial periplasmic substrate-binding proteins M478_4094 SM01321 M478_4094 M478_4103 SM00487 DEAD-like helicases superfamily M478_4103 SM00490 helicase superfamily c-terminal domain M478_4104 SM00470 ParB-like nuclease domain M478_4105 SM00470 ParB-like nuclease domain M478_4106 SM00382 ATPases associated with a variety of cellular activities M478_4116 SM00635 Bacterial Ig-like domain 2 M478_4122 SM00635 Bacterial Ig-like domain 2 M478_4128 SM00232 JAB/MPN domain M478_413 SM00382 ATPases associated with a variety of cellular activities M478_4135 SM00382 ATPases associated with a variety of cellular activities M478_4142 SM00155 Phospholipase D. Active site motifs. M478_4146 SM00857 Resolvase, N terminal domain M478_4150 SM00470 ParB-like nuclease domain M478_4151 SM00382 ATPases associated with a variety of cellular activities M478_4159 SM00470 ParB-like nuclease domain M478_4161 SM00382 ATPases associated with a variety of cellular activities M478_4167 SM00342 helix_turn_helix, arabinose operon control protein M478_4176 SM00481 DNA polymerase alpha chain like domain M478_4182 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs M478_4182 SM00475 5'-3' exonuclease M478_4186 SM00244 prohibitin homologues M478_4199 SM00470 ParB-like nuclease domain M478_4213 SM00857 Resolvase, N terminal domain M478_4232 SM00220 Serine/Threonine protein kinases, catalytic domain M478_4235 SM00194 Protein tyrosine phosphatase, catalytic domain M478_4235 SM00404 Protein tyrosine phosphatase, catalytic domain motif M478_4254 SM00342 helix_turn_helix, arabinose operon control protein M478_4263 SM00382 ATPases associated with a variety of cellular activities M478_427 SM00855 Phosphoglycerate mutase family M478_4277 SM00364 Leucine-rich repeats, bacterial type M478_428 SM00463 Small MutS-related domain M478_4286 SM00382 ATPases associated with a variety of cellular activities M478_4289 SM00530 Helix-turn-helix XRE-family like proteins M478_43 SM00729 Elongator protein 3, MiaB family, Radical SAM M478_436 SM00825 Beta-ketoacyl synthase M478_441 SM00342 helix_turn_helix, arabinose operon control protein M478_443 SM00859 Semialdehyde dehydrogenase, NAD binding domain M478_452 SM00062 Bacterial periplasmic substrate-binding proteins M478_455 SM00382 ATPases associated with a variety of cellular activities M478_457 SM00052 Putative diguanylate phosphodiesterase M478_464 SM00354 helix_turn _helix lactose operon repressor M478_471 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. M478_478 SM00928 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region M478_479 SM00926 Molybdopterin oxidoreductase Fe4S4 domain M478_479 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region M478_493 SM00354 helix_turn _helix lactose operon repressor M478_505 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain M478_510 SM00382 ATPases associated with a variety of cellular activities M478_512 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) M478_512 SM00091 PAS domain M478_512 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). M478_513 SM00382 ATPases associated with a variety of cellular activities M478_515 SM00062 Bacterial periplasmic substrate-binding proteins M478_515 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. M478_525 SM00829 Enoylreductase M478_527 SM00382 ATPases associated with a variety of cellular activities M478_529 SM00354 helix_turn _helix lactose operon repressor M478_531 SM01329 M478_531 M478_537 SM00912 haemagglutination activity domain M478_545 SM00382 ATPases associated with a variety of cellular activities M478_547 SM00354 helix_turn _helix lactose operon repressor M478_568 SM00421 helix_turn_helix, Lux Regulon M478_57 SM01321 M478_57 M478_571 SM00450 Rhodanese Homology Domain M478_573 SM00421 helix_turn_helix, Lux Regulon M478_583 SM00316 Ribosomal protein S1-like RNA-binding domain M478_584 SM00363 S4 RNA-binding domain M478_590 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. M478_591 SM00822 M478_591 M478_593 SM00825 Beta-ketoacyl synthase M478_594 SM01321 M478_594 M478_60 SM01081 Putative carbohydrate binding domain M478_618 SM00487 DEAD-like helicases superfamily M478_618 SM00490 helicase superfamily c-terminal domain M478_618 SM00982 M478_618 M478_618 SM01058 CarD-like/TRCF domain M478_620 SM00382 ATPases associated with a variety of cellular activities M478_625 SM00558 A domain family that is part of the cupin metalloenzyme superfamily. M478_626 SM00387 Histidine kinase-like ATPases M478_626 SM00388 His Kinase A (phosphoacceptor) domain M478_627 SM00448 cheY-homologous receiver domain M478_627 SM00862 Transcriptional regulatory protein, C terminal M478_634 SM01329 M478_634 M478_635 SM00354 helix_turn _helix lactose operon repressor M478_637 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) M478_637 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). M478_644 SM00344 helix_turn_helix ASNC type M478_646 SM00829 Enoylreductase M478_647 SM01038 Beta galactosidase small chain M478_648 SM00357 Cold shock protein domain M478_651 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). M478_651 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain M478_651 SM00319 Homologues of the ligand binding domain of Tar M478_653 SM00831 Cation transporter/ATPase, N-terminus M478_658 SM00073 Histidine Phosphotransfer domain M478_658 SM00260 Two component signalling adaptor domain M478_658 SM00387 Histidine kinase-like ATPases M478_658 SM01231 M478_658 M478_659 SM00260 Two component signalling adaptor domain M478_668 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). M478_668 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain M478_668 SM00319 Homologues of the ligand binding domain of Tar M478_669 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). M478_669 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain M478_669 SM00319 Homologues of the ligand binding domain of Tar M478_670 SM00138 Methyltransferase, chemotaxis proteins M478_671 SM00448 cheY-homologous receiver domain M478_672 SM00448 cheY-homologous receiver domain M478_674 SM00644 M478_674 M478_679 SM01005 Alanine racemase, C-terminal domain M478_685 SM00382 ATPases associated with a variety of cellular activities M478_687 SM01022 M478_687 M478_689 SM00972 Spore Coat Protein U domain M478_692 SM00972 Spore Coat Protein U domain M478_693 SM00972 Spore Coat Protein U domain M478_694 SM00972 Spore Coat Protein U domain M478_698 SM00945 ProQ/FINO family M478_699 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. M478_699 SM00245 tail specific protease M478_70 SM00382 ATPases associated with a variety of cellular activities M478_709 SM00346 helix_turn_helix isocitrate lyase regulation M478_710 SM00644 M478_710 M478_715 SM00382 ATPases associated with a variety of cellular activities M478_728 SM00382 ATPases associated with a variety of cellular activities M478_734 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain M478_739 SM00873 B3/4 domain M478_739 SM00874 tRNA synthetase B5 domain M478_739 SM00896 Ferredoxin-fold anticodon binding domain M478_740 SM00411 bacterial (prokaryotic) histone like domain M478_744 SM00382 ATPases associated with a variety of cellular activities M478_75 SM00382 ATPases associated with a variety of cellular activities M478_764 SM00382 ATPases associated with a variety of cellular activities M478_783 SM00354 helix_turn _helix lactose operon repressor M478_789 SM00479 M478_789 M478_794 SM00347 helix_turn_helix multiple antibiotic resistance protein M478_799 SM00363 S4 RNA-binding domain M478_807 SM00382 ATPases associated with a variety of cellular activities M478_808 SM00382 ATPases associated with a variety of cellular activities M478_812 SM01321 M478_812 M478_813 SM00382 ATPases associated with a variety of cellular activities M478_820 SM00953 M478_820 M478_822 SM00091 PAS domain M478_822 SM00382 ATPases associated with a variety of cellular activities M478_825 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain M478_829 SM00422 helix_turn_helix, mercury resistance M478_833 SM00890 Domain of unknown function M478_84 SM00357 Cold shock protein domain M478_845 SM00382 ATPases associated with a variety of cellular activities M478_845 SM00487 DEAD-like helicases superfamily M478_845 SM00490 helicase superfamily c-terminal domain M478_845 SM00847 Helicase associated domain (HA2) Add an annotation M478_847 SM00530 Helix-turn-helix XRE-family like proteins M478_848 SM00020 Trypsin-like serine protease M478_853 SM00382 ATPases associated with a variety of cellular activities M478_861 SM00382 ATPases associated with a variety of cellular activities M478_862 SM00382 ATPases associated with a variety of cellular activities M478_865 SM00155 Phospholipase D. Active site motifs. M478_879 SM00749 bacterial OsmY and nodulation domain M478_88 SM00382 ATPases associated with a variety of cellular activities M478_888 SM00363 S4 RNA-binding domain M478_89 SM00382 ATPases associated with a variety of cellular activities M478_890 SM00822 M478_890 M478_894 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain M478_894 SM00437 Bacterial DNA topoisomerase I DNA-binding domain M478_894 SM00493 M478_894 M478_899 SM00014 Acid phosphatase homologues M478_901 SM00028 Tetratricopeptide repeats M478_903 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family M478_906 SM01007 Class II Aldolase and Adducin N-terminal domain M478_911 SM00357 Cold shock protein domain M478_911 SM00955 M478_911 M478_914 SM00478 endonuclease III M478_914 SM00525 M478_914 M478_916 SM00900 M478_916 M478_918 SM00342 helix_turn_helix, arabinose operon control protein M478_926 SM00382 ATPases associated with a variety of cellular activities M478_931 SM00382 ATPases associated with a variety of cellular activities M478_933 SM00342 helix_turn_helix, arabinose operon control protein M478_94 SM00988 UreE urease accessory protein, N-terminal domain M478_947 SM00354 helix_turn _helix lactose operon repressor M478_952 SM00382 ATPases associated with a variety of cellular activities M478_962 SM00098 Alkaline phosphatase homologues M478_964 SM00100 Cyclic nucleotide-monophosphate binding domain M478_964 SM00419 helix_turn_helix, cAMP Regulatory protein M478_967 SM01002 Alanine dehydrogenase/PNT, C-terminal domain M478_967 SM01003 Alanine dehydrogenase/PNT, N-terminal domain M478_971 SM00448 cheY-homologous receiver domain M478_971 SM00862 Transcriptional regulatory protein, C terminal M478_972 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain M478_972 SM00387 Histidine kinase-like ATPases M478_972 SM00388 His Kinase A (phosphoacceptor) domain M478_974 SM01321 M478_974 M478_979 SM00382 ATPases associated with a variety of cellular activities M478_981 SM00528 Domain in histone-like proteins of HNS family M478_982 SM00984 UDP binding domain M478_983 SM00448 cheY-homologous receiver domain M478_994 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain M478_994 SM00437 Bacterial DNA topoisomerase I DNA-binding domain M478_994 SM00493 M478_994 M478_998 SM00870 M478_998