locus-tag class description M482_1 PF00216 Bacterial DNA-binding protein M482_10 PF18381 YcaO cyclodehydratase C-terminal domain M482_10 PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding M482_1000 PF00471 Ribosomal protein L33 M482_1001 PF00830 Ribosomal L28 family M482_1002 PF04002 RadC-like JAB domain M482_1003 PF04127 DNA / pantothenate metabolism flavoprotein M482_1003 PF02441 Flavoprotein M482_1004 PF00692 dUTPase M482_1005 PF00440 Bacterial regulatory proteins, tetR family M482_1006 PF00156 Phosphoribosyl transferase domain M482_1007 PF01138 3' exoribonuclease family, domain 1 M482_1007 PF03725 3' exoribonuclease family, domain 2 M482_1008 PF03755 YicC-like family, N-terminal region M482_1008 PF08340 Domain of unknown function (DUF1732) M482_1009 PF03458 UPF0126 domain M482_101 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) M482_1010 PF03120 NAD-dependent DNA ligase OB-fold domain M482_1010 PF01653 NAD-dependent DNA ligase adenylation domain M482_1011 PF00625 Guanylate kinase M482_1012 PF01192 RNA polymerase Rpb6 M482_1013 PF02824 TGS domain M482_1013 PF04607 Region found in RelA / SpoT proteins M482_1013 PF13291 ACT domain M482_1014 PF00588 SpoU rRNA Methylase family M482_1014 PF12105 SpoU, rRNA methylase, C-terminal M482_1015 PF00271 Helicase conserved C-terminal domain M482_1015 PF00270 DEAD/DEAH box helicase M482_1015 PF17191 RecG wedge domain M482_1016 PF03616 Sodium/glutamate symporter M482_1017 PF00860 Permease family M482_1018 PF05170 AsmA family M482_1019 PF00583 Acetyltransferase (GNAT) family M482_1019 PF09500 Putative thioesterase (yiiD_Cterm) M482_102 PF00370 FGGY family of carbohydrate kinases, N-terminal domain M482_102 PF02782 FGGY family of carbohydrate kinases, C-terminal domain M482_1020 PF02796 Helix-turn-helix domain of resolvase M482_1020 PF00665 Integrase core domain M482_1021 PF01695 IstB-like ATP binding protein M482_1022 PF02580 D-Tyr-tRNA(Tyr) deacylase M482_1023 PF03631 Virulence factor BrkB M482_1024 PF13419 Haloacid dehalogenase-like hydrolase M482_1026 PF03951 Glutamine synthetase, beta-Grasp domain M482_1026 PF00120 Glutamine synthetase, catalytic domain M482_1027 PF00989 PAS fold M482_1027 PF00512 His Kinase A (phospho-acceptor) domain M482_1027 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M482_1028 PF02954 Bacterial regulatory protein, Fis family M482_1028 PF00072 Response regulator receiver domain M482_1028 PF00158 Sigma-54 interaction domain M482_1029 PF04055 Radical SAM superfamily M482_1029 PF06969 HemN C-terminal domain M482_103 PF00171 Aldehyde dehydrogenase family M482_1030 PF04220 Der GTPase activator (YihI) M482_1031 PF01926 50S ribosome-binding GTPase M482_1032 PF01367 5'-3' exonuclease, C-terminal SAM fold M482_1032 PF01612 3'-5' exonuclease M482_1032 PF00476 DNA polymerase family A M482_1032 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain M482_1033 PF01323 DSBA-like thioredoxin domain M482_1034 PF01636 Phosphotransferase enzyme family M482_1035 PF06288 Protein of unknown function (DUF1040) M482_1036 PF12804 MobA-like NTP transferase domain M482_1037 PF03205 Molybdopterin guanine dinucleotide synthesis protein B M482_1038 PF00872 Transposase, Mutator family M482_1043 PF07729 FCD domain M482_1043 PF00392 Bacterial regulatory proteins, gntR family M482_1045 PF07690 Major Facilitator Superfamily M482_1046 PF00294 pfkB family carbohydrate kinase M482_1047 PF00294 pfkB family carbohydrate kinase M482_1048 PF05025 RbsD / FucU transport protein family M482_1049 PF02705 K+ potassium transporter M482_105 PF01842 ACT domain M482_105 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain M482_105 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain M482_1050 PF07728 AAA domain (dynein-related subfamily) M482_1050 PF12592 Protein of unknown function (DUF3763) M482_1050 PF17868 AAA lid domain M482_1051 PF05762 VWA domain containing CoxE-like protein M482_1052 PF03590 Aspartate-ammonia ligase M482_1053 PF01037 Lrp/AsnC ligand binding domain M482_1054 PF00258 Flavodoxin M482_1055 PF13932 GidA associated domain M482_1055 PF01134 Glucose inhibited division protein A M482_1056 PF02527 rRNA small subunit methyltransferase G M482_1057 PF03899 ATP synthase I chain M482_1058 PF00119 ATP synthase A chain M482_1059 PF00137 ATP synthase subunit C M482_1060 PF00430 ATP synthase B/B' CF(0) M482_1061 PF00213 ATP synthase delta (OSCP) subunit M482_1062 PF02874 ATP synthase alpha/beta family, beta-barrel domain M482_1062 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain M482_1062 PF00306 ATP synthase alpha/beta chain, C terminal domain M482_1063 PF00231 ATP synthase M482_1064 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain M482_1064 PF02874 ATP synthase alpha/beta family, beta-barrel domain M482_1065 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain M482_1065 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain M482_1066 PF00132 Bacterial transferase hexapeptide (six repeats) M482_1066 PF12804 MobA-like NTP transferase domain M482_1067 PF01380 SIS domain M482_1069 PF12849 PBP superfamily domain M482_107 PF03692 Putative zinc- or iron-chelating domain M482_1070 PF00528 Binding-protein-dependent transport system inner membrane component M482_1071 PF00528 Binding-protein-dependent transport system inner membrane component M482_1072 PF00005 ABC transporter M482_1073 PF01895 PhoU domain M482_1075 PF00497 Bacterial extracellular solute-binding proteins, family 3 M482_1076 PF00528 Binding-protein-dependent transport system inner membrane component M482_1077 PF00528 Binding-protein-dependent transport system inner membrane component M482_1078 PF13419 Haloacid dehalogenase-like hydrolase M482_1079 PF00860 Permease family M482_108 PF03222 Tryptophan/tyrosine permease family M482_1082 PF07055 Enoyl reductase FAD binding domain M482_1082 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase M482_1082 PF12241 Trans-2-enoyl-CoA reductase catalytic region M482_1083 PF10396 GTP-binding protein TrmE N-terminus M482_1083 PF12631 MnmE helical domain M482_1083 PF01926 50S ribosome-binding GTPase M482_1084 PF02096 60Kd inner membrane protein M482_1084 PF14849 YidC periplasmic domain M482_1085 PF01809 Putative membrane protein insertion efficiency factor M482_1086 PF00825 Ribonuclease P M482_1087 PF00468 Ribosomal protein L34 M482_1089 PF08299 Bacterial dnaA protein helix-turn-helix M482_1089 PF00308 Bacterial dnaA protein M482_1089 PF11638 DnaA N-terminal domain M482_109 PF01132 Elongation factor P (EF-P) OB domain M482_109 PF09285 Elongation factor P, C-terminal M482_109 PF08207 Elongation factor P (EF-P) KOW-like domain M482_1090 PF02767 DNA polymerase III beta subunit, central domain M482_1090 PF00712 DNA polymerase III beta subunit, N-terminal domain M482_1090 PF02768 DNA polymerase III beta subunit, C-terminal domain M482_1091 PF02463 RecF/RecN/SMC N terminal domain M482_1092 PF01751 Toprim domain M482_1092 PF00204 DNA gyrase B M482_1092 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M482_1092 PF00986 DNA gyrase B subunit, carboxyl terminus M482_1092 PF18053 DNA gyrase B subunit insert domain M482_1094 PF13276 HTH-like domain M482_1094 PF00665 Integrase core domain M482_1094 PF13333 Integrase core domain M482_1096 PF02423 Ornithine cyclodeaminase/mu-crystallin family M482_1097 PF13291 ACT domain M482_1097 PF00291 Pyridoxal-phosphate dependent enzyme M482_1098 PF12566 Protein of unknown function (DUF3748) M482_1098 PF07676 WD40-like Beta Propeller Repeat M482_1099 PF07676 WD40-like Beta Propeller Repeat M482_1099 PF12566 Protein of unknown function (DUF3748) M482_11 PF01226 Formate/nitrite transporter M482_110 PF03786 D-mannonate dehydratase (UxuA) M482_1100 PF07119 Protein of unknown function (DUF1375) M482_1101 PF00011 Hsp20/alpha crystallin family M482_1102 PF00011 Hsp20/alpha crystallin family M482_1103 PF06826 Predicted Permease Membrane Region M482_1103 PF02080 TrkA-C domain M482_1104 PF00155 Aminotransferase class I and II M482_1106 PF00128 Alpha amylase, catalytic domain M482_1107 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain M482_1107 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain M482_1109 PF13488 Glycine zipper M482_1109 PF00691 OmpA family M482_111 PF01232 Mannitol dehydrogenase Rossmann domain M482_111 PF08125 Mannitol dehydrogenase C-terminal domain M482_1111 PF03352 Methyladenine glycosylase M482_1113 PF02091 Glycyl-tRNA synthetase alpha subunit M482_1114 PF05746 DALR anticodon binding domain M482_1114 PF02092 Glycyl-tRNA synthetase beta subunit M482_1115 PF11254 Protein of unknown function (DUF3053) M482_1116 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 M482_1116 PF02378 Phosphotransferase system, EIIC M482_1116 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit M482_1117 PF01232 Mannitol dehydrogenase Rossmann domain M482_1117 PF08125 Mannitol dehydrogenase C-terminal domain M482_1118 PF05068 Mannitol repressor M482_112 PF00392 Bacterial regulatory proteins, gntR family M482_112 PF07729 FCD domain M482_1120 PF10928 Protein of unknown function (DUF2810) M482_1124 PF00672 HAMP domain M482_1124 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain M482_1124 PF02203 Tar ligand binding domain homologue M482_1125 PF02777 Iron/manganese superoxide dismutases, C-terminal domain M482_1125 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain M482_1126 PF02634 FdhD/NarQ family M482_1127 PF00384 Molybdopterin oxidoreductase M482_1127 PF04879 Molybdopterin oxidoreductase Fe4S4 domain M482_1127 PF01568 Molydopterin dinucleotide binding domain M482_1128 PF00384 Molybdopterin oxidoreductase M482_1128 PF04879 Molybdopterin oxidoreductase Fe4S4 domain M482_1128 PF01568 Molydopterin dinucleotide binding domain M482_1129 PF13247 4Fe-4S dicluster domain M482_1129 PF09163 Formate dehydrogenase N, transmembrane M482_1130 PF01292 Prokaryotic cytochrome b561 M482_1131 PF04216 Protein involved in formate dehydrogenase formation M482_1132 PF03841 L-seryl-tRNA selenium transferase M482_1132 PF12390 Selenocysteine synthase N terminal M482_1133 PF03144 Elongation factor Tu domain 2 M482_1133 PF00009 Elongation factor Tu GTP binding domain M482_1133 PF09106 Elongation factor SelB, winged helix M482_1133 PF09107 Elongation factor SelB, winged helix M482_1134 PF13700 Domain of unknown function (DUF4158) M482_1134 PF01526 Tn3 transposase DDE domain M482_1135 PF00872 Transposase, Mutator family M482_1139 PF07690 Major Facilitator Superfamily M482_114 PF07683 Cobalamin synthesis protein cobW C-terminal domain M482_114 PF02492 CobW/HypB/UreG, nucleotide-binding domain M482_1140 PF13276 HTH-like domain M482_1140 PF00665 Integrase core domain M482_1140 PF13333 Integrase core domain M482_1142 PF08220 DeoR-like helix-turn-helix domain M482_1142 PF00455 DeoR C terminal sensor domain M482_1143 PF01694 Rhomboid family M482_1143 PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease M482_1144 PF00581 Rhodanese-like domain M482_1145 PF17874 MalT-like TPR region M482_1145 PF00196 Bacterial regulatory proteins, luxR family M482_1146 PF00343 Carbohydrate phosphorylase M482_1147 PF02446 4-alpha-glucanotransferase M482_1148 PF01521 Iron-sulphur cluster biosynthesis M482_1148 PF01106 NifU-like domain M482_1149 PF00156 Phosphoribosyl transferase domain M482_115 PF01569 PAP2 superfamily M482_1150 PF00561 alpha/beta hydrolase fold M482_1151 PF07338 Protein of unknown function (DUF1471) M482_1152 PF09012 FeoC like transcriptional regulator M482_1153 PF07664 Ferrous iron transport protein B C terminus M482_1153 PF07670 Nucleoside recognition M482_1153 PF02421 Ferrous iron transport protein B M482_1153 PF17910 FeoB cytosolic helical domain M482_1154 PF04023 FeoA domain M482_1155 PF00575 S1 RNA binding domain M482_1155 PF16921 Tex protein YqgF-like domain M482_1155 PF17674 HHH domain M482_1155 PF09371 Tex-like protein N-terminal domain M482_1156 PF03449 Transcription elongation factor, N-terminal M482_1156 PF01272 Transcription elongation factor, GreA/GreB, C-term M482_1157 PF00486 Transcriptional regulatory protein, C terminal M482_1157 PF00072 Response regulator receiver domain M482_1158 PF00672 HAMP domain M482_1158 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M482_1158 PF00512 His Kinase A (phospho-acceptor) domain M482_1159 PF01293 Phosphoenolpyruvate carboxykinase M482_116 PF00877 NlpC/P60 family M482_1160 PF01430 Hsp33 protein M482_1161 PF01479 S4 domain M482_1162 PF13419 Haloacid dehalogenase-like hydrolase M482_1163 PF07095 Intracellular growth attenuator protein IgaA M482_1165 PF00293 NUDIX domain M482_1166 PF00912 Transglycosylase M482_1166 PF17092 Penicillin-binding protein OB-like domain M482_1166 PF00905 Penicillin binding protein transpeptidase domain M482_1171 PF00263 Bacterial type II and III secretion system protein M482_1171 PF03958 Bacterial type II/III secretion system short domain M482_1172 PF01202 Shikimate kinase M482_1173 PF01761 3-dehydroquinate synthase M482_1174 PF05036 Sporulation related domain M482_1175 PF02086 D12 class N6 adenine-specific DNA methyltransferase M482_1176 PF00834 Ribulose-phosphate 3 epimerase family M482_1177 PF13419 Haloacid dehalogenase-like hydrolase M482_1178 PF00579 tRNA synthetases class I (W and Y) M482_1179 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases M482_1179 PF10414 Sirohaem synthase dimerisation region M482_1179 PF14824 Sirohaem biosynthesis protein central M482_118 PF00563 EAL domain M482_118 PF12792 CSS motif domain associated with EAL M482_1180 PF01226 Formate/nitrite transporter M482_1181 PF13806 Rieske-like [2Fe-2S] domain M482_1182 PF18267 Rubredoxin NAD+ reductase C-terminal domain M482_1182 PF04324 BFD-like [2Fe-2S] binding domain M482_1182 PF07992 Pyridine nucleotide-disulphide oxidoreductase M482_1182 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain M482_1182 PF01077 Nitrite and sulphite reductase 4Fe-4S domain M482_1183 PF07969 Amidohydrolase family M482_1184 PF07690 Major Facilitator Superfamily M482_1186 PF00356 Bacterial regulatory proteins, lacI family M482_1187 PF02056 Family 4 glycosyl hydrolase M482_1187 PF11975 Family 4 glycosyl hydrolase C-terminal domain M482_1188 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD M482_1189 PF05872 Bacterial protein of unknown function (DUF853) M482_119 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle M482_1190 PF00117 Glutamine amidotransferase class-I M482_1191 PF00202 Aminotransferase class-III M482_1192 PF12805 FUSC-like inner membrane protein yccS M482_1193 PF00027 Cyclic nucleotide-binding domain M482_1193 PF13545 Crp-like helix-turn-helix domain M482_1194 PF02566 OsmC-like protein M482_1196 PF00485 Phosphoribulokinase / Uridine kinase family M482_1197 PF06794 Uncharacterised protein family (UPF0270) M482_1198 PF00561 alpha/beta hydrolase fold M482_1199 PF01810 LysE type translocator M482_12 PF01228 Glycine radical M482_12 PF02901 Pyruvate formate lyase-like M482_120 PF00528 Binding-protein-dependent transport system inner membrane component M482_1200 PF04069 Substrate binding domain of ABC-type glycine betaine transport system M482_1201 PF00005 ABC transporter M482_1202 PF00528 Binding-protein-dependent transport system inner membrane component M482_1203 PF02668 Taurine catabolism dioxygenase TauD, TfdA family M482_1206 PF00535 Glycosyl transferase family 2 M482_1207 PF00005 ABC transporter M482_1207 PF12848 ABC transporter M482_1208 PF02525 Flavodoxin-like fold M482_1209 PF02254 TrkA-N domain M482_1209 PF00999 Sodium/hydrogen exchanger family M482_121 PF12911 N-terminal TM domain of oligopeptide transport permease C M482_121 PF00528 Binding-protein-dependent transport system inner membrane component M482_1210 PF09526 Probable metal-binding protein (DUF2387) M482_1211 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase M482_1212 PF04102 SlyX M482_1213 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase M482_1213 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase M482_1214 PF13309 HTH domain M482_1214 PF08348 YheO-like PAS domain M482_1215 PF02635 DsrE/DsrF-like family M482_1216 PF02635 DsrE/DsrF-like family M482_1217 PF04077 DsrH like protein M482_1218 PF00164 Ribosomal protein S12/S23 M482_1219 PF00177 Ribosomal protein S7p/S5e M482_122 PF00005 ABC transporter M482_122 PF08352 Oligopeptide/dipeptide transporter, C-terminal region M482_1220 PF00009 Elongation factor Tu GTP binding domain M482_1220 PF00679 Elongation factor G C-terminus M482_1220 PF14492 Elongation Factor G, domain II M482_1220 PF03764 Elongation factor G, domain IV M482_1220 PF03144 Elongation factor Tu domain 2 M482_1221 PF03143 Elongation factor Tu C-terminal domain M482_1221 PF03144 Elongation factor Tu domain 2 M482_1221 PF00009 Elongation factor Tu GTP binding domain M482_1222 PF01797 Transposase IS200 like M482_1223 PF04324 BFD-like [2Fe-2S] binding domain M482_1224 PF00210 Ferritin-like domain M482_1225 PF00338 Ribosomal protein S10p/S20e M482_1226 PF00297 Ribosomal protein L3 M482_1227 PF00573 Ribosomal protein L4/L1 family M482_1228 PF00276 Ribosomal protein L23 M482_1229 PF00181 Ribosomal Proteins L2, RNA binding domain M482_1229 PF03947 Ribosomal Proteins L2, C-terminal domain M482_123 PF13989 YejG-like protein M482_1230 PF00203 Ribosomal protein S19 M482_1231 PF00237 Ribosomal protein L22p/L17e M482_1232 PF07650 KH domain M482_1232 PF00189 Ribosomal protein S3, C-terminal domain M482_1233 PF00252 Ribosomal protein L16p/L10e M482_1234 PF00831 Ribosomal L29 protein M482_1235 PF00366 Ribosomal protein S17 M482_1236 PF00238 Ribosomal protein L14p/L23e M482_1237 PF00467 KOW motif M482_1237 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 M482_1238 PF00673 ribosomal L5P family C-terminus M482_1238 PF00281 Ribosomal protein L5 M482_1239 PF00253 Ribosomal protein S14p/S29e M482_124 PF07690 Major Facilitator Superfamily M482_1240 PF00410 Ribosomal protein S8 M482_1241 PF00347 Ribosomal protein L6 M482_1242 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast M482_1243 PF00333 Ribosomal protein S5, N-terminal domain M482_1243 PF03719 Ribosomal protein S5, C-terminal domain M482_1244 PF00327 Ribosomal protein L30p/L7e M482_1245 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A M482_1246 PF00344 SecY translocase M482_1247 PF00444 Ribosomal protein L36 M482_1248 PF00416 Ribosomal protein S13/S18 M482_1249 PF00411 Ribosomal protein S11 M482_125 PF01479 S4 domain M482_125 PF00849 RNA pseudouridylate synthase M482_1250 PF01479 S4 domain M482_1250 PF00163 Ribosomal protein S4/S9 N-terminal domain M482_1251 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain M482_1251 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain M482_1251 PF01000 RNA polymerase Rpb3/RpoA insert domain M482_1252 PF01196 Ribosomal protein L17 M482_1253 PF13411 MerR HTH family regulatory protein M482_1254 PF03889 Alternative ribosome-rescue factor A M482_1255 PF01741 Large-conductance mechanosensitive channel, MscL M482_1256 PF02080 TrkA-C domain M482_1256 PF02254 TrkA-N domain M482_1257 PF01189 16S rRNA methyltransferase RsmB/F M482_1257 PF01029 NusB family M482_1258 PF00551 Formyl transferase M482_1258 PF02911 Formyl transferase, C-terminal domain M482_1259 PF01327 Polypeptide deformylase M482_126 PF00271 Helicase conserved C-terminal domain M482_126 PF04851 Type III restriction enzyme, res subunit M482_1260 PF02481 DNA recombination-mediator protein A M482_1260 PF17782 DprA winged helix domain M482_1261 PF04361 Protein of unknown function (DUF494) M482_1262 PF01396 Topoisomerase DNA binding C4 zinc finger M482_1263 PF01300 Telomere recombination M482_1264 PF01488 Shikimate / quinate 5-dehydrogenase M482_1264 PF18317 Shikimate 5'-dehydrogenase C-terminal domain M482_1264 PF08501 Shikimate dehydrogenase substrate binding domain M482_1265 PF00132 Bacterial transferase hexapeptide (six repeats) M482_127 PF01386 Ribosomal L25p family M482_1271 PF01527 Transposase M482_1272 PF13276 HTH-like domain M482_1272 PF13683 Integrase core domain M482_1273 PF01367 5'-3' exonuclease, C-terminal SAM fold M482_1273 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain M482_1274 PF01695 IstB-like ATP binding protein M482_1276 PF02796 Helix-turn-helix domain of resolvase M482_1276 PF00665 Integrase core domain M482_1278 PF00474 Sodium:solute symporter family M482_1279 PF04341 Protein of unknown function, DUF485 M482_128 PF01797 Transposase IS200 like M482_1280 PF00501 AMP-binding enzyme M482_1280 PF13193 AMP-binding enzyme C-terminal domain M482_1280 PF16177 Acetyl-coenzyme A synthetase N-terminus M482_1281 PF00375 Sodium:dicarboxylate symporter family M482_1282 PF00196 Bacterial regulatory proteins, luxR family M482_1282 PF00072 Response regulator receiver domain M482_1283 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) M482_1283 PF00072 Response regulator receiver domain M482_1283 PF01627 Hpt domain M482_1283 PF00512 His Kinase A (phospho-acceptor) domain M482_1283 PF00672 HAMP domain M482_1283 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M482_1287 PF14525 AraC-binding-like domain M482_1287 PF12833 Helix-turn-helix domain M482_129 PF04245 37-kD nucleoid-associated bacterial protein M482_1291 PF01514 Secretory protein of YscJ/FliF family M482_1294 PF00771 FHIPEP family M482_1295 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain M482_1295 PF18269 T3SS EscN ATPase C-terminal domain M482_1298 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term M482_1299 PF00813 FliP family M482_130 PF07208 Protein of unknown function (DUF1414) M482_1300 PF01313 Bacterial export proteins, family 3 M482_1301 PF01311 Bacterial export proteins, family 1 M482_1302 PF01312 FlhB HrpN YscU SpaS Family M482_1303 PF04143 Sulphur transport M482_1304 PF01206 Sulfurtransferase TusA M482_1305 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M482_1305 PF03466 LysR substrate binding domain M482_1306 PF03222 Tryptophan/tyrosine permease family M482_1307 PF01053 Cys/Met metabolism PLP-dependent enzyme M482_1308 PF00005 ABC transporter M482_1309 PF01032 FecCD transport family M482_131 PF00884 Sulfatase M482_131 PF11893 Domain of unknown function (DUF3413) M482_1310 PF01497 Periplasmic binding protein M482_1311 PF05171 Haemin-degrading HemS.ChuX domain M482_1312 PF00593 TonB dependent receptor M482_1312 PF07715 TonB-dependent Receptor Plug Domain M482_1313 PF10636 Hemin uptake protein hemP M482_1314 PF13460 NAD(P)H-binding M482_1315 PF06228 Haem utilisation ChuX/HutX M482_1316 PF04055 Radical SAM superfamily M482_1320 PF11202 Phosphoribosyl transferase (PRTase) M482_1320 PF15608 PELOTA RNA binding domain M482_1324 PF02342 TerD domain M482_1325 PF02342 TerD domain M482_1326 PF05099 Tellurite resistance protein TerB M482_1327 PF03741 Integral membrane protein TerC family M482_1328 PF02342 TerD domain M482_1329 PF02342 TerD domain M482_1331 PF13953 PapC C-terminal domain M482_1331 PF00577 Outer membrane usher protein M482_1331 PF13954 PapC N-terminal domain M482_1332 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain M482_1335 PF08031 Berberine and berberine like M482_1335 PF01565 FAD binding domain M482_1336 PF12951 Passenger-associated-transport-repeat M482_1338 PF04345 Chorismate lyase M482_1339 PF01040 UbiA prenyltransferase family M482_134 PF05638 Type VI secretion system effector, Hcp M482_1340 PF01553 Acyltransferase M482_1341 PF01219 Prokaryotic diacylglycerol kinase M482_1342 PF00717 Peptidase S24-like M482_1342 PF01726 LexA DNA binding domain M482_1343 PF01475 Ferric uptake regulator family M482_1344 PF01207 Dihydrouridine synthase (Dus) M482_1345 PF09583 Phage shock protein G (Phageshock_PspG) M482_1346 PF00107 Zinc-binding dehydrogenase M482_1346 PF08240 Alcohol dehydrogenase GroES-like domain M482_1347 PF00772 DnaB-like helicase N terminal domain M482_1347 PF03796 DnaB-like helicase C terminal domain M482_1348 PF01168 Alanine racemase, N-terminal domain M482_1348 PF00842 Alanine racemase, C-terminal domain M482_1349 PF00155 Aminotransferase class I and II M482_1350 PF04237 YjbR M482_1351 PF17755 UvrA DNA-binding domain M482_1351 PF17760 UvrA interaction domain M482_1351 PF00005 ABC transporter M482_1352 PF00436 Single-strand binding protein family M482_1353 PF05336 L-rhamnose mutarotase M482_1354 PF00465 Iron-containing alcohol dehydrogenase M482_1355 PF00596 Class II Aldolase and Adducin N-terminal domain M482_1356 PF06134 L-rhamnose isomerase (RhaA) M482_1357 PF02782 FGGY family of carbohydrate kinases, C-terminal domain M482_1357 PF00370 FGGY family of carbohydrate kinases, N-terminal domain M482_1360 PF02311 AraC-like ligand binding domain M482_1360 PF12833 Helix-turn-helix domain M482_1361 PF12833 Helix-turn-helix domain M482_1361 PF02311 AraC-like ligand binding domain M482_1362 PF06379 L-rhamnose-proton symport protein (RhaT) M482_1369 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster M482_1369 PF07992 Pyridine nucleotide-disulphide oxidoreductase M482_1369 PF13247 4Fe-4S dicluster domain M482_1370 PF13247 4Fe-4S dicluster domain M482_1370 PF12800 4Fe-4S binding domain M482_1371 PF01568 Molydopterin dinucleotide binding domain M482_1371 PF00384 Molybdopterin oxidoreductase M482_1371 PF04879 Molybdopterin oxidoreductase Fe4S4 domain M482_1372 PF02683 Cytochrome C biogenesis protein transmembrane region M482_1372 PF11412 Disulphide bond corrector protein DsbC M482_1373 PF03091 CutA1 divalent ion tolerance protein M482_1374 PF03605 Anaerobic c4-dicarboxylate membrane transporter M482_1375 PF00206 Lyase M482_1375 PF10415 Fumarase C C-terminus M482_1376 PF04186 FxsA cytoplasmic membrane protein M482_1377 PF00166 Chaperonin 10 Kd subunit M482_1378 PF00118 TCP-1/cpn60 chaperonin family M482_1379 PF13698 Domain of unknown function (DUF4156) M482_138 PF00232 Glycosyl hydrolase family 1 M482_1380 PF04055 Radical SAM superfamily M482_1381 PF08207 Elongation factor P (EF-P) KOW-like domain M482_1381 PF09285 Elongation factor P, C-terminal M482_1381 PF01132 Elongation factor P (EF-P) OB domain M482_1382 PF00893 Small Multidrug Resistance protein M482_1383 PF02313 Fumarate reductase subunit D M482_1384 PF02300 Fumarate reductase subunit C M482_1385 PF13085 2Fe-2S iron-sulfur cluster binding domain M482_1385 PF13183 4Fe-4S dicluster domain M482_1386 PF00890 FAD binding domain M482_1386 PF02910 Fumarate reductase flavoprotein C-term M482_1387 PF00152 tRNA synthetases class II (D, K and N) M482_1388 PF12795 Mechanosensitive ion channel porin domain M482_1388 PF12794 Mechanosensitive ion channel inner membrane domain 1 M482_1388 PF00924 Mechanosensitive ion channel M482_1389 PF02666 Phosphatidylserine decarboxylase M482_1390 PF03193 RsgA GTPase M482_1391 PF00929 Exonuclease M482_1394 PF08331 Domain of unknown function (DUF1730) M482_1395 PF01256 Carbohydrate kinase M482_1395 PF03853 YjeF-related protein N-terminus M482_1396 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE M482_1397 PF01520 N-acetylmuramoyl-L-alanine amidase M482_1398 PF01119 DNA mismatch repair protein, C-terminal domain M482_1398 PF08676 MutL C terminal dimerisation domain M482_14 PF04055 Radical SAM superfamily M482_140 PF01380 SIS domain M482_140 PF01418 Helix-turn-helix domain, rpiR family M482_1400 PF17209 Hfq protein M482_1401 PF01926 50S ribosome-binding GTPase M482_1401 PF13167 GTP-binding GTPase N-terminal M482_1401 PF16360 GTP-binding GTPase Middle Region M482_1402 PF01145 SPFH domain / Band 7 family M482_1402 PF12221 Bacterial membrane protein N terminal M482_1403 PF01145 SPFH domain / Band 7 family M482_1404 PF09838 Uncharacterized protein conserved in bacteria (DUF2065) M482_1405 PF00709 Adenylosuccinate synthetase M482_1406 PF02082 Transcriptional regulator M482_1407 PF00575 S1 RNA binding domain M482_1407 PF00773 RNB domain M482_1407 PF08206 Ribonuclease B OB domain M482_1407 PF08461 Ribonuclease R winged-helix domain M482_1407 PF17876 Cold shock domain M482_1408 PF08032 RNA 2'-O ribose methyltransferase substrate binding M482_1408 PF00588 SpoU rRNA Methylase family M482_1409 PF02770 Acyl-CoA dehydrogenase, middle domain M482_1409 PF00441 Acyl-CoA dehydrogenase, C-terminal domain M482_1409 PF18158 Adaptive response protein AidB N-terminal domain M482_141 PF07484 Phage Tail Collar Domain M482_1410 PF07338 Protein of unknown function (DUF1471) M482_1411 PF02796 Helix-turn-helix domain of resolvase M482_1411 PF00665 Integrase core domain M482_1412 PF01695 IstB-like ATP binding protein M482_1413 PF08019 Phosphoethanolamine transferase EptA/EptB M482_1413 PF00884 Sulfatase M482_1414 PF00072 Response regulator receiver domain M482_1414 PF00196 Bacterial regulatory proteins, luxR family M482_1415 PF05231 MASE1 M482_1415 PF07730 Histidine kinase M482_1415 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M482_1416 PF07690 Major Facilitator Superfamily M482_1419 PF13332 Hemagglutinin repeat M482_1419 PF05860 haemagglutination activity domain M482_1419 PF04829 Pre-toxin domain with VENN motif M482_1419 PF05594 Haemagluttinin repeat M482_1420 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB M482_1420 PF17287 POTRA domain M482_1420 PF08479 POTRA domain, ShlB-type M482_1422 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle M482_1423 PF00528 Binding-protein-dependent transport system inner membrane component M482_1424 PF12911 N-terminal TM domain of oligopeptide transport permease C M482_1424 PF00528 Binding-protein-dependent transport system inner membrane component M482_1425 PF00005 ABC transporter M482_1425 PF08352 Oligopeptide/dipeptide transporter, C-terminal region M482_1426 PF08352 Oligopeptide/dipeptide transporter, C-terminal region M482_1426 PF00005 ABC transporter M482_1427 PF01270 Glycosyl hydrolases family 8 M482_1428 PF00563 EAL domain M482_1428 PF17154 Gammaproteobacterial periplasmic sensor domain M482_1428 PF00990 Diguanylate cyclase, GGDEF domain M482_1428 PF00672 HAMP domain M482_1429 PF06178 Oligogalacturonate-specific porin protein (KdgM) M482_1430 PF06917 Periplasmic pectate lyase M482_1432 PF00375 Sodium:dicarboxylate symporter family M482_1434 PF05193 Peptidase M16 inactive domain M482_1434 PF00675 Insulinase (Peptidase family M16) M482_1435 PF00294 pfkB family carbohydrate kinase M482_1436 PF01361 Tautomerase enzyme M482_1437 PF00563 EAL domain M482_1438 PF05170 AsmA family M482_1439 PF02611 CDP-diacylglycerol pyrophosphatase M482_144 PF04865 Baseplate J-like protein M482_1440 PF03631 Virulence factor BrkB M482_1445 PF02595 Glycerate kinase family M482_1446 PF02447 GntP family permease M482_1447 PF05651 Putative sugar diacid recognition M482_1447 PF13556 PucR C-terminal helix-turn-helix domain M482_1447 PF17853 GGDEF-like domain M482_1448 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain M482_1448 PF07992 Pyridine nucleotide-disulphide oxidoreductase M482_1449 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ M482_1450 PF01432 Peptidase family M3 M482_1451 PF04445 Putative SAM-dependent methyltransferase M482_1452 PF08548 Peptidase M10 serralysin C terminal M482_1452 PF00413 Matrixin M482_1452 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) M482_1453 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase M482_1453 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain M482_1454 PF00582 Universal stress protein family M482_1455 PF10625 Universal stress protein B (UspB) M482_1457 PF01384 Phosphate transporter family M482_1459 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M482_1459 PF08448 PAS fold M482_1459 PF00512 His Kinase A (phospho-acceptor) domain M482_1459 PF13188 PAS domain M482_1459 PF00072 Response regulator receiver domain M482_1460 PF00005 ABC transporter M482_1461 PF01797 Transposase IS200 like M482_1462 PF00005 ABC transporter M482_1463 PF02653 Branched-chain amino acid transport system / permease component M482_1464 PF13407 Periplasmic binding protein domain M482_1466 PF01116 Fructose-bisphosphate aldolase class-II M482_1468 PF00072 Response regulator receiver domain M482_1468 PF00486 Transcriptional regulatory protein, C terminal M482_1470 PF02678 Pirin M482_1470 PF17954 Quercetinase C-terminal cupin domain M482_1471 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family M482_1471 PF00356 Bacterial regulatory proteins, lacI family M482_1472 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family M482_1472 PF00356 Bacterial regulatory proteins, lacI family M482_1473 PF02447 GntP family permease M482_1474 PF01202 Shikimate kinase M482_1478 PF01914 MarC family integral membrane protein M482_1479 PF02774 Semialdehyde dehydrogenase, dimerisation domain M482_1479 PF01118 Semialdehyde dehydrogenase, NAD binding domain M482_1484 PF02369 Bacterial Ig-like domain (group 1) M482_1484 PF11924 Inverse autotransporter, beta-domain M482_1484 PF07979 Intimin C-type lectin domain M482_1484 PF09134 Invasin, domain 3 M482_1485 PF07694 5TMR of 5TMR-LYT M482_1485 PF06580 Histidine kinase M482_1486 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) M482_1486 PF02806 Alpha amylase, C-terminal all-beta domain M482_1486 PF00128 Alpha amylase, catalytic domain M482_1487 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) M482_1487 PF18390 Glycogen debranching enzyme C-terminal domain M482_1487 PF00128 Alpha amylase, catalytic domain M482_1488 PF00483 Nucleotidyl transferase M482_1489 PF00534 Glycosyl transferases group 1 M482_1489 PF08323 Starch synthase catalytic domain M482_1490 PF00343 Carbohydrate phosphorylase M482_1491 PF01266 FAD dependent oxidoreductase M482_1491 PF16901 C-terminal domain of alpha-glycerophosphate oxidase M482_1494 PF13276 HTH-like domain M482_1494 PF00665 Integrase core domain M482_1494 PF13333 Integrase core domain M482_1496 PF00013 KH domain M482_1496 PF01138 3' exoribonuclease family, domain 1 M482_1496 PF03725 3' exoribonuclease family, domain 2 M482_1496 PF00575 S1 RNA binding domain M482_1496 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain M482_1497 PF13181 Tetratricopeptide repeat M482_1497 PF07719 Tetratricopeptide repeat M482_1498 PF00270 DEAD/DEAH box helicase M482_1498 PF03880 DbpA RNA binding domain M482_1498 PF00271 Helicase conserved C-terminal domain M482_1498 PF12343 Cold shock protein DEAD box A M482_15 PF07690 Major Facilitator Superfamily M482_1500 PF01381 Helix-turn-helix M482_1501 PF00296 Luciferase-like monooxygenase M482_1503 PF00529 HlyD membrane-fusion protein of T1SS M482_1503 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion M482_1504 PF00873 AcrB/AcrD/AcrF family M482_1505 PF02321 Outer membrane efflux protein M482_1505 PF08139 Prokaryotic membrane lipoprotein lipid attachment site M482_1509 PF13508 Acetyltransferase (GNAT) domain M482_1510 PF01541 GIY-YIG catalytic domain M482_1513 PF13416 Bacterial extracellular solute-binding protein M482_1515 PF00528 Binding-protein-dependent transport system inner membrane component M482_1516 PF00005 ABC transporter M482_1516 PF03459 TOBE domain M482_1516 PF17912 MalK OB fold domain M482_1519 PF13460 NAD(P)H-binding M482_1520 PF12706 Beta-lactamase superfamily domain M482_1522 PF07969 Amidohydrolase family M482_1523 PF00005 ABC transporter M482_1524 PF00005 ABC transporter M482_1525 PF06007 Phosphonate metabolism protein PhnJ M482_1526 PF05861 Bacterial phosphonate metabolism protein (PhnI) M482_1527 PF05845 Bacterial phosphonate metabolism protein (PhnH) M482_1528 PF06754 Phosphonate metabolism protein PhnG M482_1529 PF07702 UTRA domain M482_1529 PF00392 Bacterial regulatory proteins, gntR family M482_153 PF04984 Phage tail sheath protein subtilisin-like domain M482_153 PF17482 Phage tail sheath C-terminal domain M482_1532 PF13597 Anaerobic ribonucleoside-triphosphate reductase M482_1532 PF03477 ATP cone domain M482_1533 PF00005 ABC transporter M482_1533 PF08352 Oligopeptide/dipeptide transporter, C-terminal region M482_1534 PF08352 Oligopeptide/dipeptide transporter, C-terminal region M482_1534 PF00005 ABC transporter M482_1535 PF12911 N-terminal TM domain of oligopeptide transport permease C M482_1535 PF00528 Binding-protein-dependent transport system inner membrane component M482_1536 PF00528 Binding-protein-dependent transport system inner membrane component M482_1539 PF04074 YhcH/YjgK/YiaL M482_1540 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain M482_1540 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain M482_1541 PF06877 Regulator of ribonuclease activity B M482_1542 PF00583 Acetyltransferase (GNAT) family M482_1543 PF08264 Anticodon-binding domain of tRNA M482_1543 PF00133 tRNA synthetases class I (I, L, M and V) M482_1543 PF10458 Valyl tRNA synthetase tRNA binding arm M482_1544 PF04364 DNA polymerase III chi subunit, HolC M482_1545 PF00883 Cytosol aminopeptidase family, catalytic domain M482_1545 PF02789 Cytosol aminopeptidase family, N-terminal domain M482_1546 PF03739 Lipopolysaccharide export system permease LptF/LptG M482_1547 PF03739 Lipopolysaccharide export system permease LptF/LptG M482_1549 PF00589 Phage integrase family M482_1549 PF13356 Arm DNA-binding domain M482_1551 PF08676 MutL C terminal dimerisation domain M482_1551 PF01119 DNA mismatch repair protein, C-terminal domain M482_1552 PF01695 IstB-like ATP binding protein M482_1553 PF02796 Helix-turn-helix domain of resolvase M482_1553 PF00665 Integrase core domain M482_1554 PF12102 Domain of unknown function (DUF3578) M482_1554 PF07728 AAA domain (dynein-related subfamily) M482_1556 PF01527 Transposase M482_1557 PF01555 DNA methylase M482_1562 PF00665 Integrase core domain M482_1563 PF00665 Integrase core domain M482_1566 PF05987 Bacterial protein of unknown function (DUF898) M482_1568 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit M482_1569 PF12833 Helix-turn-helix domain M482_157 PF01261 Xylose isomerase-like TIM barrel M482_1570 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit M482_1572 PF05524 PEP-utilising enzyme, N-terminal M482_1572 PF02896 PEP-utilising enzyme, TIM barrel domain M482_1572 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 M482_1572 PF00381 PTS HPr component phosphorylation site M482_1572 PF00391 PEP-utilising enzyme, mobile domain M482_1573 PF10696 Protein of unknown function (DUF2501) M482_1574 PF03992 Antibiotic biosynthesis monooxygenase M482_1575 PF01791 DeoC/LacD family aldolase M482_1576 PF13407 Periplasmic binding protein domain M482_1577 PF02653 Branched-chain amino acid transport system / permease component M482_1578 PF02653 Branched-chain amino acid transport system / permease component M482_1579 PF00005 ABC transporter M482_158 PF00455 DeoR C terminal sensor domain M482_158 PF08220 DeoR-like helix-turn-helix domain M482_1580 PF00325 Bacterial regulatory proteins, crp family M482_1580 PF04198 Putative sugar-binding domain M482_1581 PF02782 FGGY family of carbohydrate kinases, C-terminal domain M482_1581 PF00370 FGGY family of carbohydrate kinases, N-terminal domain M482_1582 PF01075 Glycosyltransferase family 9 (heptosyltransferase) M482_1585 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion M482_1586 PF00873 AcrB/AcrD/AcrF family M482_1588 PF01095 Pectinesterase M482_1589 PF00990 Diguanylate cyclase, GGDEF domain M482_159 PF00596 Class II Aldolase and Adducin N-terminal domain M482_1590 PF07256 Protein of unknown function (DUF1435) M482_1592 PF08468 Methyltransferase small domain N-terminal M482_1592 PF05175 Methyltransferase small domain M482_1593 PF03603 DNA polymerase III psi subunit M482_1594 PF00583 Acetyltransferase (GNAT) family M482_1595 PF03144 Elongation factor Tu domain 2 M482_1595 PF00009 Elongation factor Tu GTP binding domain M482_1595 PF16658 Class II release factor RF3, C-terminal domain M482_1596 PF04972 BON domain M482_1597 PF07043 Protein of unknown function (DUF1328) M482_1598 PF01734 Patatin-like phospholipase M482_1599 PF01026 TatD related DNase M482_16 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) M482_16 PF02403 Seryl-tRNA synthetase N-terminal domain M482_160 PF07005 Sugar-binding N-terminal domain M482_160 PF17042 Nucleotide-binding C-terminal domain M482_1600 PF07662 Na+ dependent nucleoside transporter C-terminus M482_1600 PF01773 Na+ dependent nucleoside transporter N-terminus M482_1600 PF07670 Nucleoside recognition M482_1601 PF01791 DeoC/LacD family aldolase M482_1602 PF02885 Glycosyl transferase family, helical bundle domain M482_1602 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain M482_1602 PF00591 Glycosyl transferase family, a/b domain M482_1603 PF01676 Metalloenzyme superfamily M482_1604 PF01048 Phosphorylase superfamily M482_1605 PF10144 Bacterial virulence factor haemolysin M482_1606 PF18429 Domain of unknown function (DUF5609) M482_1607 PF18073 Rubredoxin metal binding domain M482_1608 PF13521 AAA domain M482_1608 PF01381 Helix-turn-helix M482_161 PF06530 Phage antitermination protein Q M482_1611 PF00005 ABC transporter M482_1611 PF12848 ABC transporter M482_1612 PF00691 OmpA family M482_1613 PF17152 Periplasmic sensor domain M482_1613 PF00990 Diguanylate cyclase, GGDEF domain M482_1615 PF00690 Cation transporter/ATPase, N-terminus M482_1615 PF00689 Cation transporting ATPase, C-terminus M482_1616 PF01464 Transglycosylase SLT domain M482_1616 PF14718 Soluble lytic murein transglycosylase L domain M482_1617 PF01931 Protein of unknown function DUF84 M482_1618 PF01371 Trp repressor protein M482_1619 PF12833 Helix-turn-helix domain M482_1619 PF06445 GyrI-like small molecule binding domain M482_162 PF01381 Helix-turn-helix M482_162 PF00717 Peptidase S24-like M482_1620 PF00300 Histidine phosphatase superfamily (branch 1) M482_1622 PF05981 CreA protein M482_1623 PF00486 Transcriptional regulatory protein, C terminal M482_1623 PF00072 Response regulator receiver domain M482_1625 PF00696 Amino acid kinase family M482_1625 PF13840 ACT domain M482_1625 PF03447 Homoserine dehydrogenase, NAD binding domain M482_1625 PF01842 ACT domain M482_1625 PF00742 Homoserine dehydrogenase M482_1626 PF00288 GHMP kinases N terminal domain M482_1626 PF08544 GHMP kinases C terminal M482_1627 PF14821 Threonine synthase N terminus M482_1627 PF00291 Pyridoxal-phosphate dependent enzyme M482_1629 PF03883 Peroxide stress protein YaaA M482_163 PF06183 DinI-like family M482_1630 PF00923 Transaldolase/Fructose-6-phosphate aldolase M482_1631 PF00994 Probable molybdopterin binding domain M482_1632 PF07690 Major Facilitator Superfamily M482_1634 PF01184 GPR1/FUN34/yaaH family M482_1635 PF00012 Hsp70 protein M482_1636 PF00226 DnaJ domain M482_1636 PF01556 DnaJ C terminal domain M482_1636 PF00684 DnaJ central domain M482_1637 PF06965 Na+/H+ antiporter 1 M482_1638 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M482_1638 PF03466 LysR substrate binding domain M482_1639 PF01649 Ribosomal protein S20 M482_1640 PF01687 Riboflavin kinase M482_1640 PF06574 FAD synthetase M482_1641 PF08264 Anticodon-binding domain of tRNA M482_1641 PF00133 tRNA synthetases class I (I, L, M and V) M482_1641 PF06827 Zinc finger found in FPG and IleRS M482_1642 PF01252 Signal peptidase (SPase) II M482_1643 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase M482_1644 PF02401 LytB protein M482_1645 PF05173 Dihydrodipicolinate reductase, C-terminus M482_1645 PF01113 Dihydrodipicolinate reductase, N-terminus M482_1646 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain M482_1646 PF00117 Glutamine amidotransferase class-I M482_1647 PF02142 MGS-like domain M482_1647 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain M482_1647 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain M482_1648 PF01810 LysE type translocator M482_1649 PF06738 Putative threonine/serine exporter M482_165 PF01278 Omptin family M482_1650 PF12821 Threonine/Serine exporter, ThrE M482_1651 PF00186 Dihydrofolate reductase M482_1653 PF00149 Calcineurin-like phosphoesterase M482_1654 PF04379 ApaG domain M482_1655 PF00398 Ribosomal RNA adenine dimethylase M482_1656 PF04166 Pyridoxal phosphate biosynthetic protein PdxA M482_1657 PF00639 PPIC-type PPIASE domain M482_1657 PF09312 SurA N-terminal domain M482_1658 PF03968 OstA-like protein M482_1658 PF04453 LPS transport system D M482_1659 PF00226 DnaJ domain M482_1659 PF05099 Tellurite resistance protein TerB M482_166 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain M482_166 PF00672 HAMP domain M482_166 PF02743 Cache domain M482_1660 PF00849 RNA pseudouridylate synthase M482_1669 PF10431 C-terminal, D2-small domain, of ClpB protein M482_1669 PF00004 ATPase family associated with various cellular activities (AAA) M482_1669 PF07724 AAA domain (Cdc48 subfamily) M482_1669 PF17871 AAA lid domain M482_167 PF12706 Beta-lactamase superfamily domain M482_1670 PF04717 Type VI secretion system, phage-baseplate injector M482_1677 PF00691 OmpA family M482_1677 PF05736 OprF membrane domain M482_1680 PF18337 RapA N-terminal Tudor like domain M482_1680 PF00271 Helicase conserved C-terminal domain M482_1680 PF12137 RNA polymerase recycling family C-terminal M482_1680 PF18339 RapA N-terminal Tudor like domain 1 M482_1680 PF00176 SNF2 family N-terminal domain M482_1681 PF00136 DNA polymerase family B M482_1681 PF03104 DNA polymerase family B, exonuclease domain M482_1682 PF09335 SNARE associated Golgi protein M482_1683 PF00005 ABC transporter M482_1684 PF00528 Binding-protein-dependent transport system inner membrane component M482_1687 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle M482_1687 PF12793 Sugar transport-related sRNA regulator N-term M482_1688 PF07690 Major Facilitator Superfamily M482_1689 PF00694 Aconitase C-terminal domain M482_169 PF00144 Beta-lactamase M482_1690 PF00330 Aconitase family (aconitate hydratase) M482_1691 PF00180 Isocitrate/isopropylmalate dehydrogenase M482_1692 PF00682 HMGL-like M482_1692 PF08502 LeuA allosteric (dimerisation) domain M482_1694 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M482_1694 PF03466 LysR substrate binding domain M482_1695 PF00501 AMP-binding enzyme M482_1696 PF00872 Transposase, Mutator family M482_1697 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain M482_1697 PF00205 Thiamine pyrophosphate enzyme, central domain M482_1697 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain M482_1698 PF10369 Small subunit of acetolactate synthase M482_1699 PF01797 Transposase IS200 like M482_17 PF16193 AAA C-terminal domain M482_17 PF12002 MgsA AAA+ ATPase C terminal M482_17 PF00004 ATPase family associated with various cellular activities (AAA) M482_1700 PF00356 Bacterial regulatory proteins, lacI family M482_1700 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family M482_1702 PF06610 L-alanine exporter M482_1703 PF02381 MraZ protein, putative antitoxin-like M482_1704 PF01795 MraW methylase family M482_1705 PF04999 Cell division protein FtsL M482_1706 PF03717 Penicillin-binding Protein dimerisation domain M482_1706 PF00905 Penicillin binding protein transpeptidase domain M482_1707 PF02875 Mur ligase family, glutamate ligase domain M482_1707 PF01225 Mur ligase family, catalytic domain M482_1707 PF08245 Mur ligase middle domain M482_1708 PF02875 Mur ligase family, glutamate ligase domain M482_1708 PF01225 Mur ligase family, catalytic domain M482_1708 PF08245 Mur ligase middle domain M482_1709 PF00953 Glycosyl transferase family 4 M482_1709 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 M482_1710 PF02875 Mur ligase family, glutamate ligase domain M482_1710 PF08245 Mur ligase middle domain M482_1711 PF01098 Cell cycle protein M482_1712 PF04101 Glycosyltransferase family 28 C-terminal domain M482_1712 PF03033 Glycosyltransferase family 28 N-terminal domain M482_1713 PF02875 Mur ligase family, glutamate ligase domain M482_1713 PF08245 Mur ligase middle domain M482_1713 PF01225 Mur ligase family, catalytic domain M482_1714 PF01820 D-ala D-ala ligase N-terminus M482_1714 PF07478 D-ala D-ala ligase C-terminus M482_1715 PF08478 POTRA domain, FtsQ-type M482_1715 PF03799 Cell division protein FtsQ M482_1716 PF02491 SHS2 domain inserted in FTSA M482_1717 PF12327 FtsZ family, C-terminal domain M482_1717 PF00091 Tubulin/FtsZ family, GTPase domain M482_1718 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase M482_172 PF00267 Gram-negative porin M482_1720 PF06558 Secretion monitor precursor protein (SecM) M482_1721 PF07516 SecA Wing and Scaffold domain M482_1721 PF02810 SEC-C motif M482_1721 PF07517 SecA DEAD-like domain M482_1721 PF01043 SecA preprotein cross-linking domain M482_1722 PF00293 NUDIX domain M482_1723 PF01695 IstB-like ATP binding protein M482_1724 PF02796 Helix-turn-helix domain of resolvase M482_1724 PF00665 Integrase core domain M482_1726 PF03884 DNA gyrase inhibitor YacG M482_1727 PF07072 Cell division protein M482_1728 PF01121 Dephospho-CoA kinase M482_1729 PF00478 IMP dehydrogenase / GMP reductase domain M482_1730 PF00482 Type II secretion system (T2SS), protein F M482_1731 PF00437 Type II/IV secretion system protein M482_1731 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain M482_1732 PF07963 Prokaryotic N-terminal methylation motif M482_1733 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain M482_1733 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain M482_1734 PF01510 N-acetylmuramoyl-L-alanine amidase M482_1735 PF17113 Regulatory signalling modulator protein AmpE M482_1736 PF00324 Amino acid permease M482_1737 PF00392 Bacterial regulatory proteins, gntR family M482_1737 PF07729 FCD domain M482_1738 PF00456 Transketolase, thiamine diphosphate binding domain M482_1738 PF17831 Pyruvate dehydrogenase E1 component middle domain M482_1739 PF00364 Biotin-requiring enzyme M482_1739 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) M482_1739 PF02817 e3 binding domain M482_174 PF07690 Major Facilitator Superfamily M482_1740 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain M482_1740 PF07992 Pyridine nucleotide-disulphide oxidoreductase M482_1741 PF01797 Transposase IS200 like M482_1742 PF00330 Aconitase family (aconitate hydratase) M482_1742 PF06434 Aconitate hydratase 2 N-terminus M482_1742 PF11791 Aconitate B N-terminal domain M482_1743 PF06062 Uncharacterised protein family (UPF0231) M482_1744 PF00892 EamA-like transporter family M482_1745 PF02675 S-adenosylmethionine decarboxylase M482_1746 PF17284 Spermidine synthase tetramerisation domain M482_1747 PF09691 Type II secretion system pilotin lipoprotein (PulS_OutS) M482_1748 PF00394 Multicopper oxidase M482_1748 PF10518 TAT (twin-arginine translocation) pathway signal sequence M482_1748 PF07732 Multicopper oxidase M482_1748 PF07731 Multicopper oxidase M482_1749 PF00156 Phosphoribosyl transferase domain M482_175 PF07690 Major Facilitator Superfamily M482_1750 PF00484 Carbonic anhydrase M482_1751 PF00005 ABC transporter M482_1752 PF01061 ABC-2 type transporter M482_1754 PF01522 Polysaccharide deacetylase M482_1755 PF02261 Aspartate decarboxylase M482_1756 PF02569 Pantoate-beta-alanine ligase M482_1757 PF02548 Ketopantoate hydroxymethyltransferase M482_1758 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) M482_1759 PF01743 Poly A polymerase head domain M482_1759 PF12627 Probable RNA and SrmB- binding site of polymerase A M482_1759 PF12626 Polymerase A arginine-rich C-terminus M482_176 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M482_176 PF16359 RcsD-ABL domain M482_176 PF01627 Hpt domain M482_1760 PF00749 tRNA synthetases class I (E and Q), catalytic domain M482_1761 PF01258 Prokaryotic dksA/traR C4-type zinc finger M482_1762 PF03749 Sugar fermentation stimulation protein RE domain M482_1762 PF17746 SfsA N-terminal OB domain M482_1763 PF02834 LigT like Phosphoesterase M482_1764 PF08482 ATP-dependent helicase C-terminal M482_1764 PF04408 Helicase associated domain (HA2) M482_1764 PF00271 Helicase conserved C-terminal domain M482_1764 PF00270 DEAD/DEAH box helicase M482_1765 PF14814 Bifunctional transglycosylase second domain M482_1765 PF00905 Penicillin binding protein transpeptidase domain M482_1765 PF00912 Transglycosylase M482_1765 PF14812 Transmembrane domain of transglycosylase PBP1 at N-terminal M482_1766 PF00005 ABC transporter M482_1767 PF01497 Periplasmic binding protein M482_1768 PF01032 FecCD transport family M482_1769 PF00202 Aminotransferase class-III M482_177 PF16359 RcsD-ABL domain M482_177 PF01627 Hpt domain M482_177 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M482_1770 PF00654 Voltage gated chloride channel M482_1771 PF01521 Iron-sulphur cluster biosynthesis M482_1772 PF03458 UPF0126 domain M482_1773 PF01497 Periplasmic binding protein M482_1774 PF01048 Phosphorylase superfamily M482_1775 PF13286 Phosphohydrolase-associated domain M482_1775 PF01966 HD domain M482_1776 PF00595 PDZ domain M482_1777 PF00072 Response regulator receiver domain M482_1777 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) M482_1777 PF01627 Hpt domain M482_1777 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M482_1777 PF00512 His Kinase A (phospho-acceptor) domain M482_1777 PF00672 HAMP domain M482_1778 PF02824 TGS domain M482_1778 PF04607 Region found in RelA / SpoT proteins M482_1778 PF13291 ACT domain M482_1779 PF03819 MazG nucleotide pyrophosphohydrolase domain M482_178 PF00196 Bacterial regulatory proteins, luxR family M482_178 PF00072 Response regulator receiver domain M482_1780 PF00117 Glutamine amidotransferase class-I M482_1780 PF06418 CTP synthase N-terminus M482_1781 PF00113 Enolase, C-terminal TIM barrel domain M482_1781 PF03952 Enolase, N-terminal domain M482_1782 PF00080 Copper/zinc superoxide dismutase (SODC) M482_1783 PF04055 Radical SAM superfamily M482_1784 PF01242 6-pyruvoyl tetrahydropterin synthase M482_1785 PF00667 FAD binding domain M482_1785 PF00258 Flavodoxin M482_1785 PF00175 Oxidoreductase NAD-binding domain M482_1786 PF01077 Nitrite and sulphite reductase 4Fe-4S domain M482_1786 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain M482_1787 PF01507 Phosphoadenosine phosphosulfate reductase family M482_1788 PF01507 Phosphoadenosine phosphosulfate reductase family M482_179 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M482_179 PF00512 His Kinase A (phospho-acceptor) domain M482_179 PF00072 Response regulator receiver domain M482_179 PF09456 RcsC Alpha-Beta-Loop (ABL) M482_1792 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases M482_1792 PF10414 Sirohaem synthase dimerisation region M482_1792 PF14824 Sirohaem biosynthesis protein central M482_1793 PF01507 Phosphoadenosine phosphosulfate reductase family M482_1794 PF00009 Elongation factor Tu GTP binding domain M482_1796 PF12084 Protein of unknown function (DUF3561) M482_1797 PF04977 Septum formation initiator M482_1798 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase M482_1799 PF02542 YgbB family M482_180 PF00521 DNA gyrase/topoisomerase IV, subunit A M482_180 PF03989 DNA gyrase C-terminal domain, beta-propeller M482_1800 PF01142 tRNA pseudouridine synthase D (TruD) M482_1801 PF01975 Survival protein SurE M482_1803 PF01476 LysM domain M482_1803 PF01551 Peptidase family M23 M482_1804 PF04545 Sigma-70, region 4 M482_1804 PF04542 Sigma-70 region 2 M482_1804 PF00140 Sigma-70 factor, region 1.2 M482_1804 PF04539 Sigma-70 region 3 M482_1805 PF05192 MutS domain III M482_1805 PF01624 MutS domain I M482_1805 PF05190 MutS family domain IV M482_1805 PF05188 MutS domain II M482_1805 PF00488 MutS domain V M482_1806 PF02502 Ribose/Galactose Isomerase M482_1807 PF08240 Alcohol dehydrogenase GroES-like domain M482_1807 PF00107 Zinc-binding dehydrogenase M482_1809 PF02733 Dak1 domain M482_1810 PF02734 DAK2 domain M482_1811 PF04198 Putative sugar-binding domain M482_1811 PF13936 Helix-turn-helix domain M482_1812 PF02040 Arsenical pump membrane protein M482_1813 PF01022 Bacterial regulatory protein, arsR family M482_1816 PF00497 Bacterial extracellular solute-binding proteins, family 3 M482_1817 PF14376 Haem-binding domain M482_1817 PF00034 Cytochrome c M482_1817 PF03150 Di-haem cytochrome c peroxidase M482_1819 PF00593 TonB dependent receptor M482_1819 PF07715 TonB-dependent Receptor Plug Domain M482_182 PF02867 Ribonucleotide reductase, barrel domain M482_182 PF03477 ATP cone domain M482_182 PF00317 Ribonucleotide reductase, all-alpha domain M482_1821 PF00557 Metallopeptidase family M24 M482_1823 PF05683 Fumarase C-terminus M482_1823 PF05681 Fumarate hydratase (Fumerase) M482_1824 PF00370 FGGY family of carbohydrate kinases, N-terminal domain M482_1824 PF02782 FGGY family of carbohydrate kinases, C-terminal domain M482_1825 PF01261 Xylose isomerase-like TIM barrel M482_1826 PF02653 Branched-chain amino acid transport system / permease component M482_1827 PF02653 Branched-chain amino acid transport system / permease component M482_1828 PF00005 ABC transporter M482_183 PF00268 Ribonucleotide reductase, small chain M482_1830 PF08220 DeoR-like helix-turn-helix domain M482_1830 PF00455 DeoR C terminal sensor domain M482_1831 PF00596 Class II Aldolase and Adducin N-terminal domain M482_1832 PF04879 Molybdopterin oxidoreductase Fe4S4 domain M482_1832 PF00384 Molybdopterin oxidoreductase M482_1832 PF01568 Molydopterin dinucleotide binding domain M482_1833 PF12800 4Fe-4S binding domain M482_1833 PF13247 4Fe-4S dicluster domain M482_1834 PF04976 DMSO reductase anchor subunit (DmsC) M482_1835 PF02613 Nitrate reductase delta subunit M482_1836 PF01292 Prokaryotic cytochrome b561 M482_1837 PF07361 Cytochrome b562 M482_1838 PF00141 Peroxidase M482_184 PF00111 2Fe-2S iron-sulfur cluster binding domain M482_1841 PF00005 ABC transporter M482_1842 PF02653 Branched-chain amino acid transport system / permease component M482_1843 PF00456 Transketolase, thiamine diphosphate binding domain M482_1844 PF02780 Transketolase, C-terminal domain M482_1844 PF02779 Transketolase, pyrimidine binding domain M482_1845 PF00370 FGGY family of carbohydrate kinases, N-terminal domain M482_1845 PF02782 FGGY family of carbohydrate kinases, C-terminal domain M482_1848 PF07690 Major Facilitator Superfamily M482_1849 PF02464 Competence-damaged protein M482_185 PF03974 Ecotin M482_1850 PF00154 recA bacterial DNA recombination protein M482_1851 PF02631 RecX family M482_1852 PF02272 DHHA1 domain M482_1852 PF01411 tRNA synthetases class II (A) M482_1852 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain M482_1853 PF02599 Global regulator protein family M482_1857 PF13419 Haloacid dehalogenase-like hydrolase M482_1858 PF09335 SNARE associated Golgi protein M482_1859 PF04262 Glutamate-cysteine ligase M482_186 PF00994 Probable molybdopterin binding domain M482_1860 PF02664 S-Ribosylhomocysteinase (LuxS) M482_1861 PF01595 Cyclin M transmembrane N-terminal domain M482_1861 PF00571 CBS domain M482_1861 PF03471 Transporter associated domain M482_1862 PF01578 Cytochrome C assembly protein M482_1863 PF02978 Signal peptide binding domain M482_1863 PF02881 SRP54-type protein, helical bundle domain M482_1863 PF00448 SRP54-type protein, GTPase domain M482_1864 PF00886 Ribosomal protein S16 M482_1865 PF05239 PRC-barrel domain M482_1865 PF01782 RimM N-terminal domain M482_1866 PF01746 tRNA (Guanine-1)-methyltransferase M482_1867 PF01245 Ribosomal protein L19 M482_1868 PF04338 Protein of unknown function, DUF481 M482_1869 PF03605 Anaerobic c4-dicarboxylate membrane transporter M482_187 PF03222 Tryptophan/tyrosine permease family M482_1870 PF03605 Anaerobic c4-dicarboxylate membrane transporter M482_1871 PF04397 LytTr DNA-binding domain M482_1871 PF00072 Response regulator receiver domain M482_1872 PF00793 DAHP synthetase I family M482_1873 PF02796 Helix-turn-helix domain of resolvase M482_1873 PF00665 Integrase core domain M482_1874 PF01695 IstB-like ATP binding protein M482_1875 PF00793 DAHP synthetase I family M482_1876 PF02153 Prephenate dehydrogenase M482_1876 PF01817 Chorismate mutase type II M482_1878 PF00800 Prephenate dehydratase M482_1878 PF01817 Chorismate mutase type II M482_1879 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein M482_188 PF07437 YfaZ precursor M482_1880 PF13525 Outer membrane lipoprotein M482_1881 PF01479 S4 domain M482_1881 PF00849 RNA pseudouridylate synthase M482_1883 PF00004 ATPase family associated with various cellular activities (AAA) M482_1883 PF02861 Clp amino terminal domain, pathogenicity island component M482_1883 PF07724 AAA domain (Cdc48 subfamily) M482_1883 PF17871 AAA lid domain M482_1883 PF10431 C-terminal, D2-small domain, of ClpB protein M482_189 PF00199 Catalase M482_189 PF06628 Catalase-related immune-responsive M482_1893 PF04204 Homoserine O-succinyltransferase M482_1894 PF01274 Malate synthase M482_1895 PF00463 Isocitrate lyase family M482_1896 PF06315 Isocitrate dehydrogenase kinase/phosphatase (AceK) M482_1897 PF09339 IclR helix-turn-helix domain M482_1897 PF01614 Bacterial transcriptional regulator M482_1898 PF02310 B12 binding domain M482_1898 PF02574 Homocysteine S-methyltransferase M482_1898 PF00809 Pterin binding enzyme M482_1898 PF02607 B12 binding domain M482_1898 PF02965 Vitamin B12 dependent methionine synthase, activation domain M482_1899 PF13332 Hemagglutinin repeat M482_1899 PF05860 haemagglutination activity domain M482_19 PF03548 Outer membrane lipoprotein carrier protein LolA M482_190 PF06733 DEAD_2 M482_190 PF13307 Helicase C-terminal domain M482_1900 PF13332 Hemagglutinin repeat M482_1900 PF05860 haemagglutination activity domain M482_1901 PF08479 POTRA domain, ShlB-type M482_1901 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB M482_1901 PF17287 POTRA domain M482_1902 PF00696 Amino acid kinase family M482_1902 PF01842 ACT domain M482_1903 PF00342 Phosphoglucose isomerase M482_1904 PF06146 Phosphate-starvation-inducible E M482_1905 PF00528 Binding-protein-dependent transport system inner membrane component M482_1906 PF14785 Maltose transport system permease protein MalF P2 domain M482_1906 PF00528 Binding-protein-dependent transport system inner membrane component M482_1907 PF01547 Bacterial extracellular solute-binding protein M482_1909 PF17912 MalK OB fold domain M482_1909 PF00005 ABC transporter M482_191 PF00267 Gram-negative porin M482_1910 PF02264 LamB porin M482_1911 PF07148 Maltose operon periplasmic protein precursor (MalM) M482_1913 PF05638 Type VI secretion system effector, Hcp M482_1917 PF13276 HTH-like domain M482_1917 PF13333 Integrase core domain M482_1917 PF00665 Integrase core domain M482_192 PF00892 EamA-like transporter family M482_1926 PF10431 C-terminal, D2-small domain, of ClpB protein M482_1926 PF00004 ATPase family associated with various cellular activities (AAA) M482_1926 PF07724 AAA domain (Cdc48 subfamily) M482_1926 PF17871 AAA lid domain M482_1933 PF04717 Type VI secretion system, phage-baseplate injector M482_1936 PF14220 Domain of unknown function (DUF4329) M482_1936 PF03527 RHS protein M482_1936 PF05593 RHS Repeat M482_194 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain M482_194 PF01276 Orn/Lys/Arg decarboxylase, major domain M482_194 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain M482_1942 PF04717 Type VI secretion system, phage-baseplate injector M482_1944 PF03527 RHS protein M482_1944 PF05593 RHS Repeat M482_1947 PF02894 Oxidoreductase family, C-terminal alpha/beta domain M482_1947 PF01408 Oxidoreductase family, NAD-binding Rossmann fold M482_1948 PF12833 Helix-turn-helix domain M482_1948 PF02311 AraC-like ligand binding domain M482_1949 PF05025 RbsD / FucU transport protein family M482_195 PF00872 Transposase, Mutator family M482_1950 PF00294 pfkB family carbohydrate kinase M482_1952 PF03358 NADPH-dependent FMN reductase M482_1953 PF09084 NMT1/THI5 like M482_1954 PF00296 Luciferase-like monooxygenase M482_1955 PF00528 Binding-protein-dependent transport system inner membrane component M482_1956 PF00005 ABC transporter M482_1957 PF04221 RelB antitoxin M482_1958 PF00860 Permease family M482_1959 PF00999 Sodium/hydrogen exchanger family M482_196 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain M482_196 PF01276 Orn/Lys/Arg decarboxylase, major domain M482_196 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain M482_1961 PF03279 Bacterial lipid A biosynthesis acyltransferase M482_1963 PF00005 ABC transporter M482_1964 PF02653 Branched-chain amino acid transport system / permease component M482_1966 PF00370 FGGY family of carbohydrate kinases, N-terminal domain M482_1966 PF02782 FGGY family of carbohydrate kinases, C-terminal domain M482_1967 PF00571 CBS domain M482_1967 PF01380 SIS domain M482_1968 PF02798 Glutathione S-transferase, N-terminal domain M482_197 PF13520 Amino acid permease M482_1971 PF01797 Transposase IS200 like M482_1972 PF00313 'Cold-shock' DNA-binding domain M482_1973 PF00313 'Cold-shock' DNA-binding domain M482_1974 PF05433 Glycine zipper 2TM domain M482_1975 PF00753 Metallo-beta-lactamase superfamily M482_1976 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase M482_1976 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase M482_1977 PF02627 Carboxymuconolactone decarboxylase family M482_1978 PF07690 Major Facilitator Superfamily M482_198 PF00528 Binding-protein-dependent transport system inner membrane component M482_1981 PF02954 Bacterial regulatory protein, Fis family M482_1982 PF01207 Dihydrouridine synthase (Dus) M482_1984 PF00474 Sodium:solute symporter family M482_1985 PF06196 Protein of unknown function (DUF997) M482_1987 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain M482_1987 PF00289 Biotin carboxylase, N-terminal domain M482_1987 PF02785 Biotin carboxylase C-terminal domain M482_1988 PF00364 Biotin-requiring enzyme M482_1989 PF01220 Dehydroquinase class II M482_199 PF00005 ABC transporter M482_1990 PF01794 Ferric reductase like transmembrane component M482_1991 PF00174 Oxidoreductase molybdopterin binding domain M482_1992 PF00107 Zinc-binding dehydrogenase M482_1992 PF08240 Alcohol dehydrogenase GroES-like domain M482_1993 PF00990 Diguanylate cyclase, GGDEF domain M482_1993 PF17157 Gammaproteobacterial periplasmic sensor domain M482_1993 PF00563 EAL domain M482_1995 PF04085 rod shape-determining protein MreC M482_1996 PF04093 rod shape-determining protein MreD M482_1997 PF02545 Maf-like protein M482_1998 PF00575 S1 RNA binding domain M482_1998 PF10150 Ribonuclease E/G family M482_1999 PF13116 Protein of unknown function M482_1999 PF13502 AsmA-like C-terminal region M482_20 PF09397 Ftsk gamma domain M482_20 PF01580 FtsK/SpoIIIE family M482_20 PF13491 4TM region of DNA translocase FtsK/SpoIIIE M482_20 PF17854 FtsK alpha domain M482_200 PF00528 Binding-protein-dependent transport system inner membrane component M482_2000 PF00795 Carbon-nitrogen hydrolase M482_2001 PF01523 Putative modulator of DNA gyrase M482_2002 PF14431 YwqJ-like deaminase M482_2002 PF18807 Tripartite Tc toxins repeat M482_2003 PF05785 Rho-activating domain of cytotoxic necrotizing factor M482_2003 PF18807 Tripartite Tc toxins repeat M482_2007 PF12256 Insecticide toxin TcdB middle/N-terminal region M482_2007 PF03534 Salmonella virulence plasmid 65kDa B protein M482_2007 PF12255 Insecticide toxin TcdB middle/C-terminal region M482_2008 PF18276 Tc toxin complex TcA C-terminal TcB-binding domain M482_2008 PF18413 Neuraminidase-like domain M482_201 PF04069 Substrate binding domain of ABC-type glycine betaine transport system M482_2010 PF03466 LysR substrate binding domain M482_2010 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M482_2011 PF03466 LysR substrate binding domain M482_2011 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M482_2012 PF07869 Protein of unknown function (DUF1656) M482_2013 PF13533 Biotin-lipoyl like M482_2014 PF04632 Fusaric acid resistance protein family M482_2015 PF00171 Aldehyde dehydrogenase family M482_2016 PF00171 Aldehyde dehydrogenase family M482_2018 PF01337 Barstar (barnase inhibitor) M482_2019 PF04751 Protein of unknown function (DUF615) M482_202 PF00581 Rhodanese-like domain M482_2020 PF01523 Putative modulator of DNA gyrase M482_2022 PF07361 Cytochrome b562 M482_2023 PF14760 Rnk N-terminus M482_2023 PF01272 Transcription elongation factor, GreA/GreB, C-term M482_2024 PF11941 Domain of unknown function (DUF3459) M482_2024 PF00128 Alpha amylase, catalytic domain M482_2025 PF00367 phosphotransferase system, EIIB M482_2025 PF02378 Phosphotransferase system, EIIC M482_2026 PF00356 Bacterial regulatory proteins, lacI family M482_2028 PF01042 Endoribonuclease L-PSP M482_2029 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain M482_2029 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain M482_2030 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain M482_2030 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain M482_2031 PF00381 PTS HPr component phosphorylation site M482_2032 PF03668 P-loop ATPase protein family M482_2033 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 M482_2034 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein M482_2035 PF00309 Sigma-54 factor, Activator interacting domain (AID) M482_2035 PF04552 Sigma-54, DNA binding domain M482_2035 PF04963 Sigma-54 factor, core binding domain M482_2036 PF00005 ABC transporter M482_2036 PF12399 Branched-chain amino acid ATP-binding cassette transporter M482_2037 PF03968 OstA-like protein M482_2038 PF06835 Lipopolysaccharide-assembly, LptC-related M482_2040 PF01380 SIS domain M482_2040 PF00571 CBS domain M482_2041 PF01699 Sodium/calcium exchanger protein M482_2042 PF00005 ABC transporter M482_2043 PF02405 Permease MlaE M482_2044 PF02470 MlaD protein M482_2045 PF05494 MlaC protein M482_2046 PF13466 STAS domain M482_2047 PF01722 BolA-like protein M482_2048 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) M482_2049 PF13180 PDZ domain M482_205 PF00005 ABC transporter M482_2050 PF01797 Transposase IS200 like M482_2051 PF00595 PDZ domain M482_2051 PF13180 PDZ domain M482_2052 PF06295 Protein of unknown function (DUF1043) M482_2053 PF03969 AFG1-like ATPase M482_2054 PF00572 Ribosomal protein L13 M482_2055 PF00380 Ribosomal protein S9/S16 M482_2056 PF00043 Glutathione S-transferase, C-terminal domain M482_2056 PF02798 Glutathione S-transferase, N-terminal domain M482_2057 PF04386 Stringent starvation protein B M482_2059 PF07992 Pyridine nucleotide-disulphide oxidoreductase M482_2059 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster M482_206 PF00005 ABC transporter M482_2060 PF01645 Conserved region in glutamate synthase M482_2060 PF04898 Glutamate synthase central domain M482_2060 PF00310 Glutamine amidotransferases class-II M482_2060 PF01493 GXGXG motif M482_2061 PF04055 Radical SAM superfamily M482_2061 PF16199 Radical_SAM C-terminal domain M482_2062 PF00989 PAS fold M482_2062 PF18415 Histidine kinase receptor ArcB trans-membrane domain M482_2062 PF00072 Response regulator receiver domain M482_2062 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M482_2062 PF00512 His Kinase A (phospho-acceptor) domain M482_2062 PF01627 Hpt domain M482_2064 PF00912 Transglycosylase M482_2065 PF04972 BON domain M482_2066 PF13580 SIS domain M482_2067 PF02021 Uncharacterised protein family UPF0102 M482_2068 PF04348 LppC putative lipoprotein M482_2069 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases M482_207 PF02653 Branched-chain amino acid transport system / permease component M482_2070 PF02678 Pirin M482_2070 PF17954 Quercetinase C-terminal cupin domain M482_2071 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M482_2071 PF03466 LysR substrate binding domain M482_2072 PF13409 Glutathione S-transferase, N-terminal domain M482_2073 PF07681 DoxX M482_2075 PF07332 Putative Actinobacterial Holin-X, holin superfamily III M482_2076 PF05957 Bacterial protein of unknown function (DUF883) M482_2078 PF13721 SecD export protein N-terminal TM region M482_2079 PF09335 SNARE associated Golgi protein M482_208 PF02653 Branched-chain amino acid transport system / permease component M482_2081 PF07729 FCD domain M482_2081 PF00392 Bacterial regulatory proteins, gntR family M482_2082 PF07690 Major Facilitator Superfamily M482_2083 PF07690 Major Facilitator Superfamily M482_2084 PF02614 Glucuronate isomerase M482_2085 PF01232 Mannitol dehydrogenase Rossmann domain M482_2085 PF08125 Mannitol dehydrogenase C-terminal domain M482_2086 PF08666 SAF domain M482_2086 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus M482_2087 PF10688 Bacterial inner membrane protein M482_2088 PF01797 Transposase IS200 like M482_2089 PF00375 Sodium:dicarboxylate symporter family M482_209 PF02954 Bacterial regulatory protein, Fis family M482_209 PF00158 Sigma-54 interaction domain M482_209 PF13188 PAS domain M482_2090 PF01408 Oxidoreductase family, NAD-binding Rossmann fold M482_2091 PF01863 Protein of unknown function DUF45 M482_2092 PF03797 Autotransporter beta-domain M482_2093 PF05175 Methyltransferase small domain M482_2094 PF07992 Pyridine nucleotide-disulphide oxidoreductase M482_2094 PF00724 NADH:flavin oxidoreductase / NADH oxidase family M482_2095 PF03729 Short repeat of unknown function (DUF308) M482_2098 PF00092 von Willebrand factor type A domain M482_21 PF01037 Lrp/AsnC ligand binding domain M482_210 PF07308 Protein of unknown function (DUF1456) M482_2100 PF02342 TerD domain M482_2101 PF00092 von Willebrand factor type A domain M482_2102 PF17287 POTRA domain M482_2102 PF08479 POTRA domain, ShlB-type M482_2102 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB M482_2103 PF13018 Extended Signal Peptide of Type V secretion system M482_2103 PF04829 Pre-toxin domain with VENN motif M482_2103 PF13332 Hemagglutinin repeat M482_2103 PF05860 haemagglutination activity domain M482_2105 PF05860 haemagglutination activity domain M482_2105 PF04829 Pre-toxin domain with VENN motif M482_2105 PF13332 Hemagglutinin repeat M482_2105 PF13018 Extended Signal Peptide of Type V secretion system M482_2107 PF13332 Hemagglutinin repeat M482_2107 PF13018 Extended Signal Peptide of Type V secretion system M482_2107 PF04829 Pre-toxin domain with VENN motif M482_2107 PF05860 haemagglutination activity domain M482_211 PF00528 Binding-protein-dependent transport system inner membrane component M482_2111 PF03459 TOBE domain M482_2111 PF17912 MalK OB fold domain M482_2111 PF00005 ABC transporter M482_2112 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain M482_2113 PF00356 Bacterial regulatory proteins, lacI family M482_2114 PF13416 Bacterial extracellular solute-binding protein M482_2115 PF00528 Binding-protein-dependent transport system inner membrane component M482_2116 PF00528 Binding-protein-dependent transport system inner membrane component M482_2118 PF01915 Glycosyl hydrolase family 3 C-terminal domain M482_2118 PF00933 Glycosyl hydrolase family 3 N terminal domain M482_2118 PF14310 Fibronectin type III-like domain M482_212 PF00528 Binding-protein-dependent transport system inner membrane component M482_2120 PF04632 Fusaric acid resistance protein family M482_2121 PF00529 HlyD membrane-fusion protein of T1SS M482_2121 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion M482_2128 PF01042 Endoribonuclease L-PSP M482_2132 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M482_2132 PF03466 LysR substrate binding domain M482_2133 PF01695 IstB-like ATP binding protein M482_2134 PF02796 Helix-turn-helix domain of resolvase M482_2134 PF00665 Integrase core domain M482_214 PF00005 ABC transporter M482_2145 PF00140 Sigma-70 factor, region 1.2 M482_2145 PF04545 Sigma-70, region 4 M482_2145 PF04539 Sigma-70 region 3 M482_2145 PF03979 Sigma-70 factor, region 1.1 M482_2145 PF04546 Sigma-70, non-essential region M482_2145 PF04542 Sigma-70 region 2 M482_2146 PF08275 DNA primase catalytic core, N-terminal domain M482_2146 PF01807 CHC2 zinc finger M482_2146 PF08278 DNA primase DnaG DnaB-binding M482_2146 PF10410 DnaB-helicase binding domain of primase M482_2147 PF01165 Ribosomal protein S21 M482_2148 PF00814 Glycoprotease family M482_2149 PF02660 Glycerol-3-phosphate acyltransferase M482_215 PF04226 Transglycosylase associated protein M482_2150 PF02152 Dihydroneopterin aldolase M482_2151 PF02673 Bacitracin resistance protein BacA M482_2152 PF01966 HD domain M482_2152 PF01743 Poly A polymerase head domain M482_2152 PF12627 Probable RNA and SrmB- binding site of polymerase A M482_2153 PF08239 Bacterial SH3 domain M482_2154 PF01928 CYTH domain M482_2155 PF03710 Glutamate-ammonia ligase adenylyltransferase M482_2155 PF08335 GlnD PII-uridylyltransferase M482_2156 PF01467 Cytidylyltransferase-like M482_2156 PF00294 pfkB family carbohydrate kinase M482_2157 PF13520 Amino acid permease M482_2158 PF04380 Membrane fusogenic activity M482_2160 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase M482_2161 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase M482_2162 PF03738 Glutathionylspermidine synthase preATP-grasp M482_2163 PF06693 Protein of unknown function (DUF1190) M482_2165 PF02321 Outer membrane efflux protein M482_2166 PF00293 NUDIX domain M482_2167 PF06853 Protein of unknown function (DUF1249) M482_2168 PF00149 Calcineurin-like phosphoesterase M482_2169 PF05728 Uncharacterised protein family (UPF0227) M482_217 PF01844 HNH endonuclease M482_2170 PF00986 DNA gyrase B subunit, carboxyl terminus M482_2170 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M482_2170 PF00204 DNA gyrase B M482_2170 PF01751 Toprim domain M482_2171 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M482_2171 PF03466 LysR substrate binding domain M482_2172 PF02525 Flavodoxin-like fold M482_2173 PF03989 DNA gyrase C-terminal domain, beta-propeller M482_2173 PF00521 DNA gyrase/topoisomerase IV, subunit A M482_2174 PF01553 Acyltransferase M482_2175 PF07731 Multicopper oxidase M482_2175 PF07732 Multicopper oxidase M482_2176 PF04055 Radical SAM superfamily M482_2176 PF08497 Radical SAM N-terminal M482_2176 PF11842 Domain of unknown function (DUF3362) M482_2177 PF11842 Domain of unknown function (DUF3362) M482_2177 PF08497 Radical SAM N-terminal M482_2177 PF04055 Radical SAM superfamily M482_2178 PF00248 Aldo/keto reductase family M482_2179 PF00465 Iron-containing alcohol dehydrogenase M482_218 PF01928 CYTH domain M482_2180 PF06719 AraC-type transcriptional regulator N-terminus M482_2180 PF12833 Helix-turn-helix domain M482_2181 PF09335 SNARE associated Golgi protein M482_2182 PF01053 Cys/Met metabolism PLP-dependent enzyme M482_2183 PF01618 MotA/TolQ/ExbB proton channel family M482_2185 PF02472 Biopolymer transport protein ExbD/TolR M482_219 PF01565 FAD binding domain M482_219 PF09330 D-lactate dehydrogenase, membrane binding M482_2192 PF00437 Type II/IV secretion system protein M482_2195 PF04972 BON domain M482_2195 PF00263 Bacterial type II and III secretion system protein M482_2195 PF13629 Pilus formation protein N terminal region M482_2196 PF04972 BON domain M482_2196 PF00263 Bacterial type II and III secretion system protein M482_2196 PF13629 Pilus formation protein N terminal region M482_22 PF07992 Pyridine nucleotide-disulphide oxidoreductase M482_220 PF00768 D-alanyl-D-alanine carboxypeptidase M482_2200 PF13953 PapC C-terminal domain M482_2200 PF13954 PapC N-terminal domain M482_2200 PF00577 Outer membrane usher protein M482_2201 PF02753 Pili assembly chaperone PapD, C-terminal domain M482_2201 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain M482_2203 PF09222 Fimbrial adhesin F17-AG, lectin domain M482_2203 PF00419 Fimbrial protein M482_2204 PF01497 Periplasmic binding protein M482_2207 PF00771 FHIPEP family M482_2208 PF01312 FlhB HrpN YscU SpaS Family M482_2209 PF01311 Bacterial export proteins, family 1 M482_2210 PF01313 Bacterial export proteins, family 3 M482_2211 PF00813 FliP family M482_2212 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term M482_2214 PF00072 Response regulator receiver domain M482_2214 PF02954 Bacterial regulatory protein, Fis family M482_2214 PF00158 Sigma-54 interaction domain M482_2215 PF02049 Flagellar hook-basal body complex protein FliE M482_2216 PF08345 Flagellar M-ring protein C-terminal M482_2216 PF01514 Secretory protein of YscJ/FliF family M482_2219 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain M482_2219 PF18269 T3SS EscN ATPase C-terminal domain M482_222 PF01207 Dihydrouridine synthase (Dus) M482_2223 PF13144 Chaperone for flagella basal body P-ring formation M482_2224 PF00460 Flagella basal body rod protein M482_2225 PF06429 Flagellar basal body rod FlgEFG protein C-terminal M482_2225 PF00460 Flagella basal body rod protein M482_2226 PF03963 Flagellar hook capping protein - N-terminal region M482_2226 PF13861 FlgD Tudor-like domain M482_2226 PF13860 FlgD Ig-like domain M482_2227 PF00460 Flagella basal body rod protein M482_2227 PF06429 Flagellar basal body rod FlgEFG protein C-terminal M482_2227 PF07559 Flagellar basal body protein FlaE M482_2228 PF00460 Flagella basal body rod protein M482_2228 PF06429 Flagellar basal body rod FlgEFG protein C-terminal M482_2229 PF00460 Flagella basal body rod protein M482_2229 PF06429 Flagellar basal body rod FlgEFG protein C-terminal M482_2230 PF02107 Flagellar L-ring protein M482_2231 PF02119 Flagellar P-ring protein M482_2233 PF06429 Flagellar basal body rod FlgEFG protein C-terminal M482_2233 PF00460 Flagella basal body rod protein M482_2237 PF18500 CadC C-terminal domain 1 M482_2237 PF00486 Transcriptional regulatory protein, C terminal M482_2238 PF00669 Bacterial flagellin N-terminal helical region M482_2238 PF00700 Bacterial flagellin C-terminal helical region M482_2239 PF00669 Bacterial flagellin N-terminal helical region M482_2239 PF00700 Bacterial flagellin C-terminal helical region M482_2240 PF00700 Bacterial flagellin C-terminal helical region M482_2240 PF00669 Bacterial flagellin N-terminal helical region M482_2241 PF00700 Bacterial flagellin C-terminal helical region M482_2241 PF00669 Bacterial flagellin N-terminal helical region M482_2242 PF07195 Flagellar hook-associated protein 2 C-terminus M482_2242 PF02465 Flagellar hook-associated protein 2 N-terminus M482_2242 PF07196 Flagellin hook IN motif M482_2247 PF04545 Sigma-70, region 4 M482_2247 PF04542 Sigma-70 region 2 M482_2248 PF01618 MotA/TolQ/ExbB proton channel family M482_2249 PF00691 OmpA family M482_2249 PF13677 Membrane MotB of proton-channel complex MotA/MotB M482_225 PF03825 Nucleoside H+ symporter M482_2253 PF05433 Glycine zipper 2TM domain M482_2256 PF00665 Integrase core domain M482_2256 PF13276 HTH-like domain M482_2256 PF13333 Integrase core domain M482_2258 PF00593 TonB dependent receptor M482_2258 PF07715 TonB-dependent Receptor Plug Domain M482_2259 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) M482_226 PF01048 Phosphorylase superfamily M482_2260 PF04183 IucA / IucC family M482_2260 PF06276 Ferric iron reductase FhuF-like transporter M482_2262 PF04183 IucA / IucC family M482_2262 PF06276 Ferric iron reductase FhuF-like transporter M482_2263 PF04183 IucA / IucC family M482_2263 PF06276 Ferric iron reductase FhuF-like transporter M482_2267 PF00765 Autoinducer synthase M482_2268 PF00196 Bacterial regulatory proteins, luxR family M482_2268 PF03472 Autoinducer binding domain M482_2270 PF02517 CPBP intramembrane metalloprotease M482_2272 PF12759 InsA C-terminal domain M482_2272 PF03811 InsA N-terminal domain M482_2279 PF05736 OprF membrane domain M482_2279 PF00691 OmpA family M482_228 PF03466 LysR substrate binding domain M482_228 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M482_2281 PF07724 AAA domain (Cdc48 subfamily) M482_2281 PF00004 ATPase family associated with various cellular activities (AAA) M482_2281 PF10431 C-terminal, D2-small domain, of ClpB protein M482_2281 PF17871 AAA lid domain M482_2285 PF03811 InsA N-terminal domain M482_2285 PF12759 InsA C-terminal domain M482_2286 PF03400 IS1 transposase M482_2288 PF02899 Phage integrase, N-terminal SAM-like domain M482_2288 PF00589 Phage integrase family M482_229 PF02028 BCCT, betaine/carnitine/choline family transporter M482_2290 PF01276 Orn/Lys/Arg decarboxylase, major domain M482_2290 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain M482_2290 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain M482_2291 PF13407 Periplasmic binding protein domain M482_2292 PF00005 ABC transporter M482_2293 PF02653 Branched-chain amino acid transport system / permease component M482_2294 PF07715 TonB-dependent Receptor Plug Domain M482_2296 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain M482_2296 PF01464 Transglycosylase SLT domain M482_2297 PF04362 Bacterial Fe(2+) trafficking M482_2298 PF14815 NUDIX domain M482_2298 PF00730 HhH-GPD superfamily base excision DNA repair protein M482_2298 PF10576 Iron-sulfur binding domain of endonuclease III M482_2298 PF00633 Helix-hairpin-helix motif M482_2299 PF02390 Putative methyltransferase M482_23 PF00005 ABC transporter M482_23 PF00664 ABC transporter transmembrane region M482_230 PF13977 BetI-type transcriptional repressor, C-terminal M482_230 PF00440 Bacterial regulatory proteins, tetR family M482_2300 PF04320 Protein with unknown function (DUF469) M482_2301 PF04960 Glutaminase M482_2302 PF11101 Protein of unknown function (DUF2884) M482_2303 PF11101 Protein of unknown function (DUF2884) M482_2304 PF07634 RtxA repeat M482_2304 PF12146 Serine aminopeptidase, S33 M482_2304 PF16671 Actin cross-linking domain M482_2304 PF11713 Peptidase C80 family M482_2304 PF11647 Membrane Localization Domain M482_2305 PF06969 HemN C-terminal domain M482_2305 PF04055 Radical SAM superfamily M482_2306 PF01725 Ham1 family M482_2307 PF02594 Uncharacterised ACR, YggU family COG1872 M482_2308 PF02325 YGGT family M482_2309 PF03807 NADP oxidoreductase coenzyme F420-dependent M482_2309 PF14748 Pyrroline-5-carboxylate reductase dimerisation M482_231 PF00171 Aldehyde dehydrogenase family M482_2310 PF01168 Alanine racemase, N-terminal domain M482_2311 PF00437 Type II/IV secretion system protein M482_2312 PF04371 Porphyromonas-type peptidyl-arginine deiminase M482_2313 PF00795 Carbon-nitrogen hydrolase M482_2314 PF03652 Holliday junction resolvase M482_2315 PF02622 Uncharacterized ACR, COG1678 M482_2316 PF02951 Prokaryotic glutathione synthetase, N-terminal domain M482_2316 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain M482_2317 PF04452 RNA methyltransferase M482_2318 PF04231 Endonuclease I M482_2319 PF10263 SprT-like family M482_2319 PF17283 SprT-like zinc ribbon domain M482_232 PF05199 GMC oxidoreductase M482_232 PF00732 GMC oxidoreductase M482_2320 PF02773 S-adenosylmethionine synthetase, C-terminal domain M482_2320 PF00438 S-adenosylmethionine synthetase, N-terminal domain M482_2320 PF02772 S-adenosylmethionine synthetase, central domain M482_2322 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain M482_2322 PF17944 Arginine decarboxylase C-terminal helical extension M482_2322 PF17810 Arginine decarboxylase helical bundle domain M482_2323 PF00355 Rieske [2Fe-2S] domain M482_2324 PF01435 Peptidase family M48 M482_2325 PF00456 Transketolase, thiamine diphosphate binding domain M482_2325 PF02780 Transketolase, C-terminal domain M482_2325 PF02779 Transketolase, pyrimidine binding domain M482_2327 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain M482_2327 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain M482_2328 PF00162 Phosphoglycerate kinase M482_2329 PF01116 Fructose-bisphosphate aldolase class-II M482_233 PF01797 Transposase IS200 like M482_2330 PF00924 Mechanosensitive ion channel M482_2330 PF05552 Conserved TM helix M482_2331 PF01810 LysE type translocator M482_2332 PF04402 Protein of unknown function (DUF541) M482_2333 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M482_2333 PF03466 LysR substrate binding domain M482_2334 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) M482_2335 PF01842 ACT domain M482_2335 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain M482_2335 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain M482_2336 PF01797 Transposase IS200 like M482_2337 PF01812 5-formyltetrahydrofolate cyclo-ligase family M482_2338 PF05164 Cell division protein ZapA M482_2339 PF03695 Uncharacterised protein family (UPF0149) M482_234 PF01027 Inhibitor of apoptosis-promoting Bax1 M482_2340 PF05195 Aminopeptidase P, N-terminal domain M482_2340 PF00557 Metallopeptidase family M24 M482_2341 PF01494 FAD binding domain M482_2342 PF01494 FAD binding domain M482_2343 PF08669 Glycine cleavage T-protein C-terminal barrel domain M482_2343 PF01571 Aminomethyltransferase folate-binding domain M482_2344 PF01597 Glycine cleavage H-protein M482_2345 PF02347 Glycine cleavage system P-protein M482_2348 PF03895 YadA-like membrane anchor domain M482_2348 PF05658 Head domain of trimeric autotransporter adhesin M482_2348 PF05662 Coiled stalk of trimeric autotransporter adhesin M482_2348 PF13018 Extended Signal Peptide of Type V secretion system M482_235 PF02391 MoaE protein M482_2350 PF03006 Haemolysin-III related M482_2352 PF01571 Aminomethyltransferase folate-binding domain M482_2353 PF03937 Flavinator of succinate dehydrogenase M482_2354 PF00486 Transcriptional regulatory protein, C terminal M482_2354 PF00072 Response regulator receiver domain M482_2355 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M482_2355 PF00672 HAMP domain M482_2355 PF00512 His Kinase A (phospho-acceptor) domain M482_2356 PF06123 Inner membrane protein CreD M482_2357 PF00258 Flavodoxin M482_2358 PF00589 Phage integrase family M482_2358 PF02899 Phage integrase, N-terminal SAM-like domain M482_2359 PF10411 Disulfide bond isomerase protein N-terminus M482_2359 PF13098 Thioredoxin-like domain M482_236 PF02597 ThiS family M482_2360 PF02272 DHHA1 domain M482_2360 PF01368 DHH family M482_2360 PF17768 RecJ OB domain M482_2361 PF00472 RF-1 domain M482_2361 PF03462 PCRF domain M482_2362 PF00152 tRNA synthetases class II (D, K and N) M482_2362 PF01336 OB-fold nucleic acid binding domain M482_2364 PF00589 Phage integrase family M482_2364 PF14659 Phage integrase, N-terminal SAM-like domain M482_2364 PF13356 Arm DNA-binding domain M482_2368 PF15723 Motility quorum-sensing regulator, toxin of MqsA M482_2369 PF15731 Antitoxin component of bacterial toxin-antitoxin system, MqsA M482_237 PF01967 MoaC family M482_238 PF06463 Molybdenum Cofactor Synthesis C M482_238 PF04055 Radical SAM superfamily M482_2386 PF03551 Transcriptional regulator PadR-like family M482_2387 PF05708 Permuted papain-like amidase enzyme, YaeF/YiiX, C92 family M482_2389 PF13407 Periplasmic binding protein domain M482_2390 PF02653 Branched-chain amino acid transport system / permease component M482_2391 PF00005 ABC transporter M482_2392 PF00005 ABC transporter M482_2392 PF17912 MalK OB fold domain M482_2393 PF13416 Bacterial extracellular solute-binding protein M482_2394 PF00528 Binding-protein-dependent transport system inner membrane component M482_2395 PF00528 Binding-protein-dependent transport system inner membrane component M482_2396 PF07745 Glycosyl hydrolase family 53 M482_2397 PF08532 Beta-galactosidase trimerisation domain M482_2397 PF08533 Beta-galactosidase C-terminal domain M482_2397 PF02449 Beta-galactosidase M482_2398 PF08532 Beta-galactosidase trimerisation domain M482_2398 PF08533 Beta-galactosidase C-terminal domain M482_2398 PF02449 Beta-galactosidase M482_24 PF00005 ABC transporter M482_24 PF00664 ABC transporter transmembrane region M482_240 PF01933 Uncharacterised protein family UPF0052 M482_2400 PF02378 Phosphotransferase system, EIIC M482_2400 PF00367 phosphotransferase system, EIIB M482_2401 PF02264 LamB porin M482_2402 PF00356 Bacterial regulatory proteins, lacI family M482_2403 PF17137 Domain of unknown function (DUF5110) M482_2403 PF13802 Galactose mutarotase-like M482_2403 PF01055 Glycosyl hydrolases family 31 M482_2403 PF16338 Domain of unknown function (DUF4968) M482_2404 PF07690 Major Facilitator Superfamily M482_2405 PF00356 Bacterial regulatory proteins, lacI family M482_2408 PF01116 Fructose-bisphosphate aldolase class-II M482_241 PF09905 DNA-binding protein VF530 M482_2410 PF00884 Sulfatase M482_2411 PF13186 Iron-sulfur cluster-binding domain M482_2411 PF04055 Radical SAM superfamily M482_2414 PF01979 Amidohydrolase family M482_2415 PF03610 PTS system fructose IIA component M482_2416 PF03613 PTS system mannose/fructose/sorbose family IID component M482_2417 PF03609 PTS system sorbose-specific iic component M482_2418 PF03830 PTS system sorbose subfamily IIB component M482_2419 PF01380 SIS domain M482_242 PF17757 UvrB interaction domain M482_242 PF02151 UvrB/uvrC motif M482_242 PF00271 Helicase conserved C-terminal domain M482_242 PF04851 Type III restriction enzyme, res subunit M482_242 PF12344 Ultra-violet resistance protein B M482_2420 PF08013 Tagatose 6 phosphate kinase M482_2421 PF00455 DeoR C terminal sensor domain M482_2421 PF08220 DeoR-like helix-turn-helix domain M482_2422 PF00884 Sulfatase M482_2424 PF02796 Helix-turn-helix domain of resolvase M482_2424 PF00665 Integrase core domain M482_2425 PF01695 IstB-like ATP binding protein M482_2426 PF09092 Lyase, N terminal M482_2426 PF09093 Lyase, catalytic M482_2426 PF02884 Polysaccharide lyase family 8, C-terminal beta-sandwich domain M482_2426 PF02278 Polysaccharide lyase family 8, super-sandwich domain M482_2430 PF00484 Carbonic anhydrase M482_2433 PF03958 Bacterial type II/III secretion system short domain M482_2433 PF00263 Bacterial type II and III secretion system protein M482_2436 PF00482 Type II secretion system (T2SS), protein F M482_2437 PF07963 Prokaryotic N-terminal methylation motif M482_2437 PF08334 Type II secretion system (T2SS), protein G M482_2445 PF06750 Bacterial Peptidase A24 N-terminal domain M482_2445 PF01478 Type IV leader peptidase family M482_2447 PF00872 Transposase, Mutator family M482_245 PF08241 Methyltransferase domain M482_2451 PF00672 HAMP domain M482_2451 PF02203 Tar ligand binding domain homologue M482_2451 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain M482_2453 PF03466 LysR substrate binding domain M482_2453 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M482_2454 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M482_2454 PF03466 LysR substrate binding domain M482_2455 PF07690 Major Facilitator Superfamily M482_2456 PF00356 Bacterial regulatory proteins, lacI family M482_2457 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain M482_2457 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain M482_2458 PF01568 Molydopterin dinucleotide binding domain M482_2458 PF00384 Molybdopterin oxidoreductase M482_2459 PF13193 AMP-binding enzyme C-terminal domain M482_2459 PF00501 AMP-binding enzyme M482_2459 PF01553 Acyltransferase M482_246 PF00155 Aminotransferase class I and II M482_2460 PF07690 Major Facilitator Superfamily M482_2463 PF00248 Aldo/keto reductase family M482_2464 PF02976 DNA mismatch repair enzyme MutH M482_2465 PF00293 NUDIX domain M482_2466 PF05524 PEP-utilising enzyme, N-terminal M482_2466 PF02896 PEP-utilising enzyme, TIM barrel domain M482_2466 PF01590 GAF domain M482_2466 PF00391 PEP-utilising enzyme, mobile domain M482_2467 PF01790 Prolipoprotein diacylglyceryl transferase M482_2468 PF00303 Thymidylate synthase M482_247 PF06968 Biotin and Thiamin Synthesis associated domain M482_247 PF04055 Radical SAM superfamily M482_2474 PF17946 RecC C-terminal domain M482_2475 PF00675 Insulinase (Peptidase family M16) M482_2475 PF16187 Middle or third domain of peptidase_M16 M482_2475 PF05193 Peptidase M16 inactive domain M482_2476 PF12705 PD-(D/E)XK nuclease superfamily M482_2476 PF00580 UvrD/REP helicase N-terminal domain M482_2476 PF13361 UvrD-like helicase C-terminal domain M482_2477 PF13538 UvrD-like helicase C-terminal domain M482_2478 PF00583 Acetyltransferase (GNAT) family M482_2478 PF00696 Amino acid kinase family M482_2479 PF01695 IstB-like ATP binding protein M482_248 PF00202 Aminotransferase class-III M482_2480 PF00665 Integrase core domain M482_2480 PF02796 Helix-turn-helix domain of resolvase M482_2481 PF00583 Acetyltransferase (GNAT) family M482_2481 PF00696 Amino acid kinase family M482_2482 PF01520 N-acetylmuramoyl-L-alanine amidase M482_2482 PF11741 AMIN domain M482_2485 PF03562 MltA specific insert domain M482_2485 PF06725 3D domain M482_2486 PF00899 ThiF family M482_2487 PF02657 Fe-S metabolism associated domain M482_2488 PF00266 Aminotransferase class-V M482_249 PF10282 Lactonase, 7-bladed beta-propeller M482_2490 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M482_2490 PF03466 LysR substrate binding domain M482_2491 PF04241 Protein of unknown function (DUF423) M482_2492 PF01728 FtsJ-like methyltransferase M482_2492 PF18125 RlmM ferredoxin-like domain M482_2493 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain M482_2493 PF01367 5'-3' exonuclease, C-terminal SAM fold M482_2494 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases M482_2494 PF03641 Possible lysine decarboxylase M482_2494 PF11892 Domain of unknown function (DUF3412) M482_2495 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term M482_2495 PF14489 QueF-like protein M482_2496 PF07348 Syd protein (SUKH-2) M482_2497 PF01797 Transposase IS200 like M482_2498 PF04287 tRNA pseudouridine synthase C M482_2499 PF00849 RNA pseudouridylate synthase M482_25 PF03588 Leucyl/phenylalanyl-tRNA protein transferase M482_2500 PF00258 Flavodoxin M482_2501 PF11944 Protein of unknown function (DUF3461) M482_2502 PF00132 Bacterial transferase hexapeptide (six repeats) M482_2502 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal M482_2502 PF14602 Hexapeptide repeat of succinyl-transferase M482_2503 PF01909 Nucleotidyltransferase domain M482_2503 PF01842 ACT domain M482_2503 PF01966 HD domain M482_2503 PF08335 GlnD PII-uridylyltransferase M482_2504 PF00557 Metallopeptidase family M24 M482_2505 PF00318 Ribosomal protein S2 M482_2506 PF00889 Elongation factor TS M482_2507 PF00696 Amino acid kinase family M482_2508 PF01765 Ribosome recycling factor M482_2509 PF13288 DXP reductoisomerase C-terminal domain M482_2509 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase M482_2509 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain M482_251 PF03459 TOBE domain M482_251 PF00005 ABC transporter M482_2510 PF01255 Putative undecaprenyl diphosphate synthase M482_2512 PF17820 PDZ domain M482_2512 PF02163 Peptidase family M50 M482_2513 PF07244 Surface antigen variable number repeat M482_2513 PF01103 Surface antigen M482_2514 PF03938 Outer membrane protein (OmpH-like) M482_2515 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD M482_2515 PF00132 Bacterial transferase hexapeptide (six repeats) M482_2516 PF07977 FabA-like domain M482_2517 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 M482_2517 PF00132 Bacterial transferase hexapeptide (six repeats) M482_2518 PF02684 Lipid-A-disaccharide synthetase M482_2519 PF01351 Ribonuclease HII M482_252 PF00528 Binding-protein-dependent transport system inner membrane component M482_2520 PF14579 Helix-hairpin-helix motif M482_2520 PF01336 OB-fold nucleic acid binding domain M482_2520 PF07733 Bacterial DNA polymerase III alpha NTPase domain M482_2520 PF17657 Bacterial DNA polymerase III alpha subunit finger domain M482_2520 PF02811 PHP domain M482_2521 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit M482_2522 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily M482_2523 PF01171 PP-loop family M482_2523 PF09179 TilS substrate binding domain M482_2523 PF11734 TilS substrate C-terminal domain M482_2524 PF00034 Cytochrome c M482_2525 PF07073 Modulator of Rho-dependent transcription termination (ROF) M482_2526 PF06786 Uncharacterised protein family (UPF0253) M482_2527 PF07152 YaeQ protein M482_2528 PF00472 RF-1 domain M482_2529 PF17185 NlpE C-terminal OB domain M482_2529 PF04170 NlpE N-terminal domain M482_2530 PF04073 Aminoacyl-tRNA editing domain M482_2530 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) M482_2530 PF03129 Anticodon binding domain M482_2531 PF01980 tRNA-methyltransferase O M482_2531 PF18389 TrmO C-terminal domain M482_2532 PF16358 RcsF lipoprotein M482_2533 PF03180 NLPA lipoprotein M482_2534 PF00528 Binding-protein-dependent transport system inner membrane component M482_2535 PF00005 ABC transporter M482_2535 PF09383 NIL domain M482_254 PF10766 Multidrug efflux pump-associated protein AcrZ M482_2542 PF00248 Aldo/keto reductase family M482_2544 PF03372 Endonuclease/Exonuclease/phosphatase family M482_2545 PF01476 LysM domain M482_2545 PF01464 Transglycosylase SLT domain M482_2546 PF00753 Metallo-beta-lactamase superfamily M482_2546 PF16123 Hydroxyacylglutathione hydrolase C-terminus M482_2547 PF08241 Methyltransferase domain M482_2548 PF00075 RNase H M482_2549 PF00929 Exonuclease M482_255 PF03459 TOBE domain M482_255 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M482_2551 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin M482_2553 PF04069 Substrate binding domain of ABC-type glycine betaine transport system M482_2554 PF00528 Binding-protein-dependent transport system inner membrane component M482_2555 PF00571 CBS domain M482_2555 PF00005 ABC transporter M482_2556 PF00268 Ribonucleotide reductase, small chain M482_2557 PF08343 Ribonucleotide reductase N-terminal M482_2557 PF00317 Ribonucleotide reductase, all-alpha domain M482_2557 PF02867 Ribonucleotide reductase, barrel domain M482_2558 PF07972 NrdI Flavodoxin like M482_256 PF00005 ABC transporter M482_2560 PF06392 Acid shock protein repeat M482_2561 PF09400 Protein of unknown function (DUF2002) M482_2562 PF06711 Protein of unknown function (DUF1198) M482_2564 PF00313 'Cold-shock' DNA-binding domain M482_2565 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle M482_2566 PF00528 Binding-protein-dependent transport system inner membrane component M482_2567 PF12911 N-terminal TM domain of oligopeptide transport permease C M482_2567 PF00528 Binding-protein-dependent transport system inner membrane component M482_2568 PF00005 ABC transporter M482_2569 PF00005 ABC transporter M482_2571 PF00547 Urease, gamma subunit M482_2572 PF00699 Urease beta subunit M482_2573 PF00449 Urease alpha-subunit, N-terminal domain M482_2573 PF01979 Amidohydrolase family M482_2574 PF02814 UreE urease accessory protein, N-terminal domain M482_2574 PF05194 UreE urease accessory protein, C-terminal domain M482_2575 PF01730 UreF M482_2576 PF02492 CobW/HypB/UreG, nucleotide-binding domain M482_2577 PF01774 UreD urease accessory protein M482_2578 PF03253 Urea transporter M482_2579 PF03824 High-affinity nickel-transport protein M482_2580 PF06411 HdeA/HdeB family M482_2581 PF07885 Ion channel M482_2581 PF02254 TrkA-N domain M482_2582 PF02537 CrcB-like protein, Camphor Resistance (CrcB) M482_2583 PF02537 CrcB-like protein, Camphor Resistance (CrcB) M482_2584 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit M482_2585 PF02378 Phosphotransferase system, EIIC M482_2586 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit M482_2587 PF07883 Cupin domain M482_2587 PF12833 Helix-turn-helix domain M482_2588 PF04794 YdjC-like protein M482_2591 PF03925 SeqA protein C-terminal domain M482_2591 PF17206 SeqA protein N-terminal domain M482_2592 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain M482_2592 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I M482_2592 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III M482_2592 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II M482_2596 PF00072 Response regulator receiver domain M482_2596 PF00486 Transcriptional regulatory protein, C terminal M482_2597 PF02702 Osmosensitive K+ channel His kinase sensor domain M482_2597 PF00512 His Kinase A (phospho-acceptor) domain M482_2597 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M482_2597 PF13492 GAF domain M482_2597 PF13493 Domain of unknown function (DUF4118) M482_2598 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M482_2598 PF13492 GAF domain M482_2598 PF13493 Domain of unknown function (DUF4118) M482_2598 PF00512 His Kinase A (phospho-acceptor) domain M482_2598 PF02702 Osmosensitive K+ channel His kinase sensor domain M482_2599 PF02669 K+-transporting ATPase, c chain M482_26 PF01176 Translation initiation factor 1A / IF-1 M482_260 PF16363 GDP-mannose 4,6 dehydratase M482_2601 PF03814 Potassium-transporting ATPase A subunit M482_2602 PF10725 Protein of unknown function (DUF2517) M482_2603 PF08349 Protein of unknown function (DUF1722) M482_2604 PF03441 FAD binding domain of DNA photolyase M482_2604 PF00875 DNA photolyase M482_2605 PF02112 cAMP phosphodiesterases class-II M482_2606 PF01784 NIF3 (NGG1p interacting factor 3) M482_2608 PF02682 Carboxyltransferase domain, subdomain C and D M482_2609 PF02626 Carboxyltransferase domain, subdomain A and B M482_261 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain M482_261 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain M482_2610 PF03746 LamB/YcsF family M482_2613 PF01470 Pyroglutamyl peptidase M482_2614 PF03167 Uracil DNA glycosylase superfamily M482_2615 PF01228 Glycine radical M482_2618 PF12796 Ankyrin repeats (3 copies) M482_262 PF00288 GHMP kinases N terminal domain M482_262 PF08544 GHMP kinases C terminal M482_262 PF10509 Galactokinase galactose-binding signature M482_2620 PF00270 DEAD/DEAH box helicase M482_2620 PF00271 Helicase conserved C-terminal domain M482_2621 PF05175 Methyltransferase small domain M482_2622 PF02910 Fumarate reductase flavoprotein C-term M482_2622 PF00890 FAD binding domain M482_2623 PF04542 Sigma-70 region 2 M482_2623 PF08281 Sigma-70, region 4 M482_2624 PF03872 Anti sigma-E protein RseA, N-terminal domain M482_2624 PF03873 Anti sigma-E protein RseA, C-terminal domain M482_2625 PF17188 MucB/RseB C-terminal domain M482_2625 PF03888 MucB/RseB N-terminal domain M482_2628 PF00679 Elongation factor G C-terminus M482_2628 PF06421 GTP-binding protein LepA C-terminus M482_2628 PF03144 Elongation factor Tu domain 2 M482_2628 PF00009 Elongation factor Tu GTP binding domain M482_2629 PF10502 Signal peptidase, peptidase S26 M482_2630 PF14622 Ribonuclease-III-like M482_2630 PF00035 Double-stranded RNA binding motif M482_2631 PF01926 50S ribosome-binding GTPase M482_2631 PF07650 KH domain M482_2632 PF02565 Recombination protein O C terminal M482_2632 PF11967 Recombination protein O N terminal M482_2633 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ M482_2634 PF01648 4'-phosphopantetheinyl transferase superfamily M482_2635 PF01797 Transposase IS200 like M482_2636 PF02801 Beta-ketoacyl synthase, C-terminal domain M482_2636 PF00109 Beta-ketoacyl synthase, N-terminal domain M482_2637 PF01695 IstB-like ATP binding protein M482_2638 PF02796 Helix-turn-helix domain of resolvase M482_2638 PF00665 Integrase core domain M482_2639 PF00109 Beta-ketoacyl synthase, N-terminal domain M482_2639 PF02801 Beta-ketoacyl synthase, C-terminal domain M482_264 PF01263 Aldose 1-epimerase M482_2641 PF07977 FabA-like domain M482_2642 PF13654 AAA domain M482_2642 PF05362 Lon protease (S16) C-terminal proteolytic domain M482_2643 PF17414 MatP C-terminal ribbon-helix-helix domain M482_2643 PF06303 MatP N-terminal domain M482_2644 PF01797 Transposase IS200 like M482_2645 PF00691 OmpA family M482_2645 PF01389 OmpA-like transmembrane domain M482_2646 PF03846 Cell division inhibitor SulA M482_2647 PF04994 TfoX C-terminal domain M482_2647 PF04993 TfoX N-terminal domain M482_2648 PF12805 FUSC-like inner membrane protein yccS M482_2649 PF03733 Inner membrane component domain M482_2650 PF00580 UvrD/REP helicase N-terminal domain M482_2650 PF13361 UvrD-like helicase C-terminal domain M482_2650 PF12462 DNA helicase IV / RNA helicase N terminal M482_2651 PF02142 MGS-like domain M482_2652 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) M482_2653 PF13380 CoA binding domain M482_2654 PF08755 Hemimethylated DNA-binding protein YccV like M482_2655 PF10672 S-adenosylmethionine-dependent methyltransferase M482_2655 PF17785 PUA-like domain M482_2656 PF00708 Acylphosphatase M482_2657 PF04358 DsrC like protein M482_2659 PF13610 DDE domain M482_266 PF00300 Histidine phosphatase superfamily (branch 1) M482_2663 PF01565 FAD binding domain M482_2663 PF08031 Berberine and berberine like M482_2666 PF07977 FabA-like domain M482_2667 PF02801 Beta-ketoacyl synthase, C-terminal domain M482_2667 PF00109 Beta-ketoacyl synthase, N-terminal domain M482_2669 PF01154 Hydroxymethylglutaryl-coenzyme A synthase N terminal M482_2669 PF08540 Hydroxymethylglutaryl-coenzyme A synthase C terminal M482_267 PF00793 DAHP synthetase I family M482_2671 PF00378 Enoyl-CoA hydratase/isomerase M482_2674 PF00550 Phosphopantetheine attachment site M482_2675 PF00698 Acyl transferase domain M482_268 PF00793 DAHP synthetase I family M482_2681 PF00691 OmpA family M482_2681 PF05736 OprF membrane domain M482_2683 PF00004 ATPase family associated with various cellular activities (AAA) M482_2683 PF07724 AAA domain (Cdc48 subfamily) M482_2683 PF17871 AAA lid domain M482_2683 PF10431 C-terminal, D2-small domain, of ClpB protein M482_269 PF01545 Cation efflux family M482_270 PF04973 Nicotinamide mononucleotide transporter M482_2702 PF00005 ABC transporter M482_2702 PF12848 ABC transporter M482_2704 PF00899 ThiF family M482_2705 PF00994 Probable molybdopterin binding domain M482_2705 PF03454 MoeA C-terminal region (domain IV) M482_2705 PF03453 MoeA N-terminal region (domain I and II) M482_2707 PF00005 ABC transporter M482_2708 PF13533 Biotin-lipoyl like M482_271 PF02445 Quinolinate synthetase A protein M482_2711 PF00756 Putative esterase M482_2712 PF08240 Alcohol dehydrogenase GroES-like domain M482_2712 PF00107 Zinc-binding dehydrogenase M482_2713 PF03466 LysR substrate binding domain M482_2713 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M482_2714 PF06779 Uncharacterised MFS-type transporter YbfB M482_2715 PF01227 GTP cyclohydrolase I M482_2716 PF04235 Protein of unknown function (DUF418) M482_2717 PF13407 Periplasmic binding protein domain M482_2718 PF00005 ABC transporter M482_2719 PF02653 Branched-chain amino acid transport system / permease component M482_2720 PF01695 IstB-like ATP binding protein M482_2721 PF00665 Integrase core domain M482_2721 PF02796 Helix-turn-helix domain of resolvase M482_2722 PF02653 Branched-chain amino acid transport system / permease component M482_2723 PF02698 DUF218 domain M482_2724 PF03949 Malic enzyme, NAD binding domain M482_2724 PF00390 Malic enzyme, N-terminal domain M482_2725 PF08211 Cytidine and deoxycytidylate deaminase zinc-binding region M482_2725 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region M482_2726 PF04172 LrgB-like family M482_2727 PF03788 LrgA family M482_2728 PF07690 Major Facilitator Superfamily M482_2732 PF01797 Transposase IS200 like M482_2733 PF09334 tRNA synthetases class I (M) M482_2733 PF01588 Putative tRNA binding domain M482_2734 PF10609 NUBPL iron-transfer P-loop NTPase M482_2735 PF00485 Phosphoribulokinase / Uridine kinase family M482_2736 PF00692 dUTPase M482_2737 PF05170 AsmA family M482_2738 PF03471 Transporter associated domain M482_2738 PF00571 CBS domain M482_2738 PF03741 Integral membrane protein TerC family M482_2739 PF06276 Ferric iron reductase FhuF-like transporter M482_2739 PF11575 FhuF 2Fe-2S C-terminal domain M482_274 PF13174 Tetratricopeptide repeat M482_274 PF16331 TolA binding protein trimerisation M482_2740 PF00282 Pyridoxal-dependent decarboxylase conserved domain M482_2741 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) M482_2743 PF06276 Ferric iron reductase FhuF-like transporter M482_2743 PF04183 IucA / IucC family M482_2744 PF00005 ABC transporter M482_2745 PF01032 FecCD transport family M482_2746 PF01032 FecCD transport family M482_2747 PF01497 Periplasmic binding protein M482_2748 PF00593 TonB dependent receptor M482_2748 PF07660 Secretin and TonB N terminus short domain M482_2748 PF07715 TonB-dependent Receptor Plug Domain M482_2749 PF06276 Ferric iron reductase FhuF-like transporter M482_2749 PF04183 IucA / IucC family M482_275 PF00691 OmpA family M482_2750 PF00483 Nucleotidyl transferase M482_2751 PF00483 Nucleotidyl transferase M482_2752 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase M482_2752 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain M482_2753 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase M482_2753 PF01502 Phosphoribosyl-AMP cyclohydrolase M482_2754 PF00977 Histidine biosynthesis protein M482_2755 PF00977 Histidine biosynthesis protein M482_2756 PF00117 Glutamine amidotransferase class-I M482_2757 PF00475 Imidazoleglycerol-phosphate dehydratase M482_2758 PF00155 Aminotransferase class I and II M482_2759 PF00815 Histidinol dehydrogenase M482_276 PF07676 WD40-like Beta Propeller Repeat M482_276 PF04052 TolB amino-terminal domain M482_2760 PF08029 HisG, C-terminal domain M482_2760 PF01634 ATP phosphoribosyltransferase M482_2761 PF01370 NAD dependent epimerase/dehydratase family M482_2763 PF02653 Branched-chain amino acid transport system / permease component M482_2764 PF00005 ABC transporter M482_2765 PF00005 ABC transporter M482_2766 PF00465 Iron-containing alcohol dehydrogenase M482_2768 PF13520 Amino acid permease M482_2769 PF00929 Exonuclease M482_2769 PF08411 Exonuclease C-terminal M482_277 PF06519 TolA C-terminal M482_277 PF06519 TolA C-terminal M482_2771 PF04363 Protein of unknown function (DUF496) M482_2772 PF09134 Invasin, domain 3 M482_2772 PF11924 Inverse autotransporter, beta-domain M482_2772 PF02369 Bacterial Ig-like domain (group 1) M482_2773 PF00872 Transposase, Mutator family M482_2774 PF07690 Major Facilitator Superfamily M482_2775 PF04134 Protein of unknown function, DUF393 M482_2777 PF01557 Fumarylacetoacetate (FAA) hydrolase family M482_2778 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain M482_2778 PF13378 Enolase C-terminal domain-like M482_278 PF02472 Biopolymer transport protein ExbD/TolR M482_2780 PF01070 FMN-dependent dehydrogenase M482_2781 PF00764 Arginosuccinate synthase M482_2782 PF01554 MatE M482_2784 PF01522 Polysaccharide deacetylase M482_2786 PF09831 Uncharacterized protein conserved in bacteria (DUF2058) M482_2788 PF00196 Bacterial regulatory proteins, luxR family M482_2788 PF00072 Response regulator receiver domain M482_2789 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component M482_279 PF01618 MotA/TolQ/ExbB proton channel family M482_2791 PF03480 Bacterial extracellular solute-binding protein, family 7 M482_2792 PF17837 4'-phosphopantetheinyl transferase N-terminal domain M482_2792 PF01648 4'-phosphopantetheinyl transferase superfamily M482_2795 PF16875 Glycosyl hydrolase family 36 N-terminal domain M482_2795 PF16874 Glycosyl hydrolase family 36 C-terminal domain M482_2796 PF01306 LacY proton/sugar symporter M482_2797 PF00356 Bacterial regulatory proteins, lacI family M482_2797 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family M482_2799 PF06167 Glucose-regulated metallo-peptidase M90 M482_28 PF07724 AAA domain (Cdc48 subfamily) M482_28 PF00004 ATPase family associated with various cellular activities (AAA) M482_28 PF10431 C-terminal, D2-small domain, of ClpB protein M482_28 PF02861 Clp amino terminal domain, pathogenicity island component M482_28 PF17871 AAA lid domain M482_280 PF03061 Thioesterase superfamily M482_2802 PF01797 Transposase IS200 like M482_2803 PF00664 ABC transporter transmembrane region M482_2803 PF00005 ABC transporter M482_2805 PF12833 Helix-turn-helix domain M482_2807 PF10964 Protein of unknown function (DUF2766) M482_2808 PF13996 YobH-like protein M482_2809 PF13974 YebO-like protein M482_281 PF09600 Cyd operon protein YbgE (Cyd_oper_YbgE) M482_2812 PF00324 Amino acid permease M482_2813 PF07017 Antimicrobial peptide resistance and lipid A acylation protein PagP M482_2815 PF00313 'Cold-shock' DNA-binding domain M482_2817 PF13847 Methyltransferase domain M482_2819 PF13426 PAS domain M482_2819 PF08448 PAS fold M482_2819 PF00563 EAL domain M482_2819 PF00990 Diguanylate cyclase, GGDEF domain M482_2819 PF05231 MASE1 M482_2819 PF08447 PAS fold M482_282 PF08173 Membrane bound YbgT-like protein M482_2820 PF07715 TonB-dependent Receptor Plug Domain M482_2820 PF00593 TonB dependent receptor M482_2821 PF02659 Putative manganese efflux pump M482_2822 PF06173 Protein of unknown function (DUF986) M482_2823 PF03613 PTS system mannose/fructose/sorbose family IID component M482_2824 PF03609 PTS system sorbose-specific iic component M482_2825 PF03610 PTS system fructose IIA component M482_2825 PF03830 PTS system sorbose subfamily IIB component M482_2826 PF03610 PTS system fructose IIA component M482_2826 PF03830 PTS system sorbose subfamily IIB component M482_2827 PF03741 Integral membrane protein TerC family M482_2827 PF03471 Transporter associated domain M482_2828 PF01047 MarR family M482_2829 PF01557 Fumarylacetoacetate (FAA) hydrolase family M482_283 PF02322 Cytochrome bd terminal oxidase subunit II M482_2830 PF01557 Fumarylacetoacetate (FAA) hydrolase family M482_2831 PF00171 Aldehyde dehydrogenase family M482_2832 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase M482_2833 PF02962 5-carboxymethyl-2-hydroxymuconate isomerase M482_2834 PF01557 Fumarylacetoacetate (FAA) hydrolase family M482_2835 PF03328 HpcH/HpaI aldolase/citrate lyase family M482_2836 PF07690 Major Facilitator Superfamily M482_2837 PF03241 4-hydroxyphenylacetate 3-hydroxylase C terminal M482_2837 PF11794 4-hydroxyphenylacetate 3-hydroxylase N terminal M482_2838 PF01613 Flavin reductase like domain M482_2839 PF03315 Serine dehydratase beta chain M482_2839 PF03313 Serine dehydratase alpha chain M482_284 PF01654 Cytochrome bd terminal oxidase subunit I M482_2840 PF00293 NUDIX domain M482_2841 PF04715 Anthranilate synthase component I, N terminal region M482_2841 PF00425 chorismate binding enzyme M482_2842 PF03701 Uncharacterised protein family (UPF0181) M482_2843 PF02222 ATP-grasp domain M482_2844 PF00271 Helicase conserved C-terminal domain M482_2844 PF00270 DEAD/DEAH box helicase M482_2844 PF03880 DbpA RNA binding domain M482_2845 PF07130 YebG protein M482_2847 PF13995 YebF-like protein M482_2848 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain M482_2848 PF00326 Prolyl oligopeptidase family M482_2849 PF00561 alpha/beta hydrolase fold M482_285 PF01797 Transposase IS200 like M482_2850 PF06440 DNA polymerase III, theta subunit M482_2851 PF00210 Ferritin-like domain M482_2852 PF04234 CopC domain M482_2854 PF10709 Protein of unknown function (DUF2511) M482_2857 PF01312 FlhB HrpN YscU SpaS Family M482_2858 PF00771 FHIPEP family M482_2859 PF06366 Flagellar protein FlhE M482_286 PF00549 CoA-ligase M482_286 PF02629 CoA binding domain M482_2860 PF09134 Invasin, domain 3 M482_2860 PF07979 Intimin C-type lectin domain M482_2860 PF11924 Inverse autotransporter, beta-domain M482_2860 PF02369 Bacterial Ig-like domain (group 1) M482_2862 PF07979 Intimin C-type lectin domain M482_2862 PF11924 Inverse autotransporter, beta-domain M482_2862 PF09134 Invasin, domain 3 M482_2862 PF02369 Bacterial Ig-like domain (group 1) M482_2863 PF05130 FlgN protein M482_2864 PF04316 Anti-sigma-28 factor, FlgM M482_2865 PF13144 Chaperone for flagella basal body P-ring formation M482_2865 PF17656 FlgA N-terminal domain M482_2866 PF00460 Flagella basal body rod protein M482_2867 PF06429 Flagellar basal body rod FlgEFG protein C-terminal M482_2867 PF00460 Flagella basal body rod protein M482_2868 PF13860 FlgD Ig-like domain M482_2868 PF13861 FlgD Tudor-like domain M482_2868 PF03963 Flagellar hook capping protein - N-terminal region M482_2869 PF06429 Flagellar basal body rod FlgEFG protein C-terminal M482_2869 PF00460 Flagella basal body rod protein M482_2869 PF07559 Flagellar basal body protein FlaE M482_287 PF00549 CoA-ligase M482_287 PF08442 ATP-grasp domain M482_2870 PF06429 Flagellar basal body rod FlgEFG protein C-terminal M482_2870 PF00460 Flagella basal body rod protein M482_2871 PF06429 Flagellar basal body rod FlgEFG protein C-terminal M482_2871 PF00460 Flagella basal body rod protein M482_2872 PF02107 Flagellar L-ring protein M482_2873 PF02119 Flagellar P-ring protein M482_2874 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase M482_2874 PF10135 Rod binding protein M482_2875 PF06429 Flagellar basal body rod FlgEFG protein C-terminal M482_2875 PF00460 Flagella basal body rod protein M482_2876 PF00669 Bacterial flagellin N-terminal helical region M482_2877 PF04198 Putative sugar-binding domain M482_2878 PF00596 Class II Aldolase and Adducin N-terminal domain M482_288 PF00364 Biotin-requiring enzyme M482_288 PF02817 e3 binding domain M482_288 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) M482_2880 PF02653 Branched-chain amino acid transport system / permease component M482_2881 PF13407 Periplasmic binding protein domain M482_2882 PF00005 ABC transporter M482_2883 PF02653 Branched-chain amino acid transport system / permease component M482_2884 PF00294 pfkB family carbohydrate kinase M482_2887 PF01311 Bacterial export proteins, family 1 M482_2888 PF01313 Bacterial export proteins, family 3 M482_2889 PF00813 FliP family M482_289 PF02779 Transketolase, pyrimidine binding domain M482_289 PF16078 2-oxoglutarate dehydrogenase N-terminus M482_289 PF00676 Dehydrogenase E1 component M482_289 PF16870 2-oxoglutarate dehydrogenase C-terminal M482_2890 PF04347 Flagellar biosynthesis protein, FliO M482_2891 PF16973 Flagellar motor switch protein FliN N-terminal M482_2891 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term M482_2892 PF02154 Flagellar motor switch protein FliM M482_2892 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term M482_2893 PF03748 Flagellar basal body-associated protein FliL M482_2894 PF02120 Flagellar hook-length control protein FliK M482_2895 PF02050 Flagellar FliJ protein M482_2896 PF18269 T3SS EscN ATPase C-terminal domain M482_2896 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain M482_2897 PF02108 Flagellar assembly protein FliH M482_2898 PF14841 FliG middle domain M482_2898 PF01706 FliG C-terminal domain M482_2898 PF14842 FliG N-terminal domain M482_2899 PF08345 Flagellar M-ring protein C-terminal M482_2899 PF01514 Secretory protein of YscJ/FliF family M482_29 PF02617 ATP-dependent Clp protease adaptor protein ClpS M482_290 PF13085 2Fe-2S iron-sulfur cluster binding domain M482_2900 PF02049 Flagellar hook-basal body complex protein FliE M482_2903 PF00730 HhH-GPD superfamily base excision DNA repair protein M482_2904 PF01966 HD domain M482_2905 PF12833 Helix-turn-helix domain M482_2906 PF05400 Flagellar protein FliT M482_2907 PF02561 Flagellar protein FliS M482_2908 PF02465 Flagellar hook-associated protein 2 N-terminus M482_2908 PF07195 Flagellar hook-associated protein 2 C-terminus M482_2908 PF07196 Flagellin hook IN motif M482_2909 PF00700 Bacterial flagellin C-terminal helical region M482_2909 PF08884 Flagellin D3 domain M482_2909 PF00669 Bacterial flagellin N-terminal helical region M482_291 PF00890 FAD binding domain M482_291 PF02910 Fumarate reductase flavoprotein C-term M482_2910 PF04542 Sigma-70 region 2 M482_2910 PF04539 Sigma-70 region 3 M482_2910 PF04545 Sigma-70, region 4 M482_2911 PF02899 Phage integrase, N-terminal SAM-like domain M482_2912 PF00291 Pyridoxal-phosphate dependent enzyme M482_2919 PF00171 Aldehyde dehydrogenase family M482_2919 PF01619 Proline dehydrogenase M482_2919 PF18327 Proline utilization A proline dehydrogenase N-terminal domain M482_2919 PF14850 DNA-binding domain of Proline dehydrogenase M482_292 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit M482_2921 PF00474 Sodium:solute symporter family M482_2922 PF03239 Iron permease FTR1 family M482_2923 PF09375 Imelysin M482_2923 PF13473 Cupredoxin-like domain M482_2924 PF04261 Dyp-type peroxidase family M482_2925 PF03358 NADPH-dependent FMN reductase M482_2926 PF01344 Kelch motif M482_2927 PF00324 Amino acid permease M482_2929 PF13505 Outer membrane protein beta-barrel domain M482_293 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit M482_2931 PF06942 GlpM protein M482_2932 PF10769 Protein of unknown function (DUF2594) M482_2933 PF00196 Bacterial regulatory proteins, luxR family M482_2933 PF00072 Response regulator receiver domain M482_2934 PF01541 GIY-YIG catalytic domain M482_2934 PF02151 UvrB/uvrC motif M482_2934 PF08459 UvrC Helix-hairpin-helix N-terminal M482_2935 PF01066 CDP-alcohol phosphatidyltransferase M482_294 PF00285 Citrate synthase, C-terminal domain M482_2944 PF05638 Type VI secretion system effector, Hcp M482_295 PF01025 GrpE M482_2956 PF00872 Transposase, Mutator family M482_2957 PF00872 Transposase, Mutator family M482_296 PF01513 ATP-NAD kinase M482_2964 PF01408 Oxidoreductase family, NAD-binding Rossmann fold M482_2964 PF02894 Oxidoreductase family, C-terminal alpha/beta domain M482_2965 PF01547 Bacterial extracellular solute-binding protein M482_2966 PF00528 Binding-protein-dependent transport system inner membrane component M482_2967 PF00528 Binding-protein-dependent transport system inner membrane component M482_2968 PF08402 TOBE domain M482_2968 PF00005 ABC transporter M482_297 PF02463 RecF/RecN/SMC N terminal domain M482_2971 PF00665 Integrase core domain M482_2971 PF02796 Helix-turn-helix domain of resolvase M482_2972 PF01695 IstB-like ATP binding protein M482_298 PF04355 SmpA / OmlA family M482_2980 PF00593 TonB dependent receptor M482_2980 PF07715 TonB-dependent Receptor Plug Domain M482_2981 PF13193 AMP-binding enzyme C-terminal domain M482_2981 PF00501 AMP-binding enzyme M482_2982 PF00975 Thioesterase domain M482_2984 PF00109 Beta-ketoacyl synthase, N-terminal domain M482_2984 PF02801 Beta-ketoacyl synthase, C-terminal domain M482_2984 PF00550 Phosphopantetheine attachment site M482_2984 PF00698 Acyl transferase domain M482_2984 PF00668 Condensation domain M482_2984 PF16197 Ketoacyl-synthetase C-terminal extension M482_2985 PF00668 Condensation domain M482_2985 PF00501 AMP-binding enzyme M482_2985 PF00550 Phosphopantetheine attachment site M482_2985 PF08242 Methyltransferase domain M482_2987 PF00664 ABC transporter transmembrane region M482_2987 PF08021 Siderophore-interacting FAD-binding domain M482_2987 PF04954 Siderophore-interacting protein M482_2987 PF00005 ABC transporter M482_2988 PF00005 ABC transporter M482_2988 PF00664 ABC transporter transmembrane region M482_2989 PF07690 Major Facilitator Superfamily M482_299 PF03658 RnfH family Ubiquitin M482_2990 PF00425 chorismate binding enzyme M482_2991 PF00589 Phage integrase family M482_2991 PF13356 Arm DNA-binding domain M482_2994 PF00872 Transposase, Mutator family M482_2995 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain M482_2995 PF02753 Pili assembly chaperone PapD, C-terminal domain M482_2997 PF13953 PapC C-terminal domain M482_2997 PF00577 Outer membrane usher protein M482_2997 PF13954 PapC N-terminal domain M482_2998 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain M482_2998 PF02753 Pili assembly chaperone PapD, C-terminal domain M482_3 PF00575 S1 RNA binding domain M482_30 PF00313 'Cold-shock' DNA-binding domain M482_300 PF03364 Polyketide cyclase / dehydrase and lipid transport M482_3000 PF00072 Response regulator receiver domain M482_3000 PF00989 PAS fold M482_3000 PF00497 Bacterial extracellular solute-binding proteins, family 3 M482_3000 PF01627 Hpt domain M482_3000 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M482_3000 PF00512 His Kinase A (phospho-acceptor) domain M482_3001 PF00072 Response regulator receiver domain M482_3001 PF00196 Bacterial regulatory proteins, luxR family M482_3003 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain M482_3003 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain M482_3004 PF01575 MaoC like domain M482_3005 PF03328 HpcH/HpaI aldolase/citrate lyase family M482_3006 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M482_3006 PF03466 LysR substrate binding domain M482_301 PF01668 SmpB protein M482_3010 PF04909 Amidohydrolase M482_3012 PF02508 Rnf-Nqr subunit, membrane protein M482_3013 PF00155 Aminotransferase class I and II M482_3014 PF00324 Amino acid permease M482_3015 PF00455 DeoR C terminal sensor domain M482_3015 PF08220 DeoR-like helix-turn-helix domain M482_3016 PF04960 Glutaminase M482_3019 PF03239 Iron permease FTR1 family M482_3020 PF10634 Fe2+ transport protein M482_3022 PF12704 MacB-like periplasmic core domain M482_3022 PF02687 FtsX-like permease family M482_3022 PF00005 ABC transporter M482_3024 PF00005 ABC transporter M482_3024 PF02687 FtsX-like permease family M482_3024 PF12704 MacB-like periplasmic core domain M482_3025 PF00578 AhpC/TSA family M482_3027 PF03848 Tellurite resistance protein TehB M482_3027 PF09313 Domain of unknown function (DUF1971) M482_3028 PF00557 Metallopeptidase family M24 M482_303 PF13356 Arm DNA-binding domain M482_303 PF00589 Phage integrase family M482_3030 PF01522 Polysaccharide deacetylase M482_3030 PF14883 Hypothetical glycosyl hydrolase family 13 M482_3031 PF00535 Glycosyl transferase family 2 M482_3032 PF13994 PgaD-like protein M482_3035 PF02562 PhoH-like protein M482_3036 PF01797 Transposase IS200 like M482_3037 PF01699 Sodium/calcium exchanger protein M482_3039 PF00672 HAMP domain M482_3039 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M482_3039 PF07730 Histidine kinase M482_3039 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term M482_3040 PF00392 Bacterial regulatory proteins, gntR family M482_3040 PF00155 Aminotransferase class I and II M482_3043 PF00202 Aminotransferase class-III M482_3044 PF04958 Arginine N-succinyltransferase beta subunit M482_3045 PF00171 Aldehyde dehydrogenase family M482_3046 PF04996 Succinylarginine dihydrolase M482_3047 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family M482_3048 PF00267 Gram-negative porin M482_3049 PF00872 Transposase, Mutator family M482_3051 PF01695 IstB-like ATP binding protein M482_3052 PF00665 Integrase core domain M482_3052 PF02796 Helix-turn-helix domain of resolvase M482_3053 PF01979 Amidohydrolase family M482_3054 PF07702 UTRA domain M482_3054 PF00392 Bacterial regulatory proteins, gntR family M482_3055 PF01979 Amidohydrolase family M482_3056 PF05962 HutD M482_3058 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal M482_3058 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III M482_3059 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III M482_3059 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal M482_3060 PF01370 NAD dependent epimerase/dehydratase family M482_3069 PF00872 Transposase, Mutator family M482_3074 PF08242 Methyltransferase domain M482_3083 PF00672 HAMP domain M482_3083 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M482_3083 PF00512 His Kinase A (phospho-acceptor) domain M482_3084 PF00486 Transcriptional regulatory protein, C terminal M482_3084 PF00072 Response regulator receiver domain M482_3085 PF01695 IstB-like ATP binding protein M482_3087 PF00665 Integrase core domain M482_3087 PF02796 Helix-turn-helix domain of resolvase M482_3088 PF00486 Transcriptional regulatory protein, C terminal M482_3088 PF00072 Response regulator receiver domain M482_3089 PF02129 X-Pro dipeptidyl-peptidase (S15 family) M482_3098 PF01926 50S ribosome-binding GTPase M482_3098 PF06071 Protein of unknown function (DUF933) M482_3099 PF01195 Peptidyl-tRNA hydrolase M482_31 PF00005 ABC transporter M482_31 PF02687 FtsX-like permease family M482_31 PF12704 MacB-like periplasmic core domain M482_3100 PF10762 Protein of unknown function (DUF2583) M482_3101 PF14572 Phosphoribosyl synthetase-associated domain M482_3101 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase M482_3102 PF00288 GHMP kinases N terminal domain M482_3102 PF08544 GHMP kinases C terminal M482_3103 PF03550 Outer membrane lipoprotein LolB M482_3104 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain M482_3104 PF01488 Shikimate / quinate 5-dehydrogenase M482_3104 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain M482_3105 PF03462 PCRF domain M482_3105 PF00472 RF-1 domain M482_3106 PF17827 PrmC N-terminal domain M482_3106 PF13847 Methyltransferase domain M482_3107 PF04247 Invasion gene expression up-regulator, SirB M482_3108 PF13369 Transglutaminase-like superfamily M482_3109 PF00793 DAHP synthetase I family M482_3110 PF01740 STAS domain M482_3110 PF00916 Sulfate permease family M482_3112 PF03009 Glycerophosphoryl diester phosphodiesterase family M482_3114 PF00528 Binding-protein-dependent transport system inner membrane component M482_3115 PF00528 Binding-protein-dependent transport system inner membrane component M482_3116 PF08402 TOBE domain M482_3116 PF00005 ABC transporter M482_3117 PF01797 Transposase IS200 like M482_3118 PF08402 TOBE domain M482_3118 PF00005 ABC transporter M482_3119 PF03009 Glycerophosphoryl diester phosphodiesterase family M482_3120 PF00480 ROK family M482_3120 PF01325 Iron dependent repressor, N-terminal DNA binding domain M482_3122 PF02811 PHP domain M482_3123 PF02613 Nitrate reductase delta subunit M482_3124 PF07273 Protein of unknown function (DUF1439) M482_3125 PF07690 Major Facilitator Superfamily M482_3126 PF13302 Acetyltransferase (GNAT) domain M482_3127 PF01408 Oxidoreductase family, NAD-binding Rossmann fold M482_3128 PF03023 Lipid II flippase MurJ M482_3129 PF17287 POTRA domain M482_3129 PF08479 POTRA domain, ShlB-type M482_3129 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB M482_313 PF05973 Phage derived protein Gp49-like (DUF891) M482_3130 PF05860 haemagglutination activity domain M482_3130 PF13332 Hemagglutinin repeat M482_3131 PF05746 DALR anticodon binding domain M482_3131 PF03485 Arginyl tRNA synthetase N terminal domain M482_3131 PF00750 tRNA synthetases class I (R) M482_3132 PF06185 YecM protein M482_3133 PF03932 CutC family M482_3134 PF08003 Protein of unknown function (DUF1698) M482_3135 PF13649 Methyltransferase domain M482_3136 PF01124 MAPEG family M482_3137 PF01904 Protein of unknown function DUF72 M482_3138 PF02938 GAD domain M482_3138 PF00152 tRNA synthetases class II (D, K and N) M482_3138 PF01336 OB-fold nucleic acid binding domain M482_3139 PF00293 NUDIX domain M482_3140 PF01709 Transcriptional regulator M482_3141 PF02075 Crossover junction endodeoxyribonuclease RuvC M482_3142 PF01797 Transposase IS200 like M482_3143 PF07499 RuvA, C-terminal domain M482_3143 PF01330 RuvA N terminal domain M482_3144 PF05491 RuvB C-terminal winged helix domain M482_3144 PF05496 Holliday junction DNA helicase RuvB P-loop domain M482_3144 PF17864 RuvB AAA lid domain M482_3145 PF00950 ABC 3 transport family M482_3146 PF00005 ABC transporter M482_3147 PF01297 Zinc-uptake complex component A periplasmic M482_3148 PF08525 Opacity-associated protein A N-terminal motif M482_3148 PF01476 LysM domain M482_3148 PF01551 Peptidase family M23 M482_3149 PF03279 Bacterial lipid A biosynthesis acyltransferase M482_315 PF02796 Helix-turn-helix domain of resolvase M482_315 PF00665 Integrase core domain M482_3150 PF00224 Pyruvate kinase, barrel domain M482_3150 PF02887 Pyruvate kinase, alpha/beta domain M482_3151 PF01418 Helix-turn-helix domain, rpiR family M482_3151 PF01380 SIS domain M482_3152 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain M482_3152 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain M482_3154 PF01081 KDPG and KHG aldolase M482_3155 PF00893 Small Multidrug Resistance protein M482_3156 PF00893 Small Multidrug Resistance protein M482_3157 PF01042 Endoribonuclease L-PSP M482_3158 PF13307 Helicase C-terminal domain M482_3158 PF04851 Type III restriction enzyme, res subunit M482_3159 PF00814 Glycoprotease family M482_316 PF01695 IstB-like ATP binding protein M482_3160 PF03843 Outer membrane lipoprotein Slp family M482_3161 PF00501 AMP-binding enzyme M482_3161 PF13193 AMP-binding enzyme C-terminal domain M482_3162 PF01612 3'-5' exonuclease M482_3162 PF00570 HRDC domain M482_3163 PF03776 Septum formation topological specificity factor MinE M482_3164 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain M482_3165 PF05209 Septum formation inhibitor MinC, N-terminal domain M482_3165 PF03775 Septum formation inhibitor MinC, C-terminal domain M482_3166 PF05166 YcgL domain M482_3167 PF13406 Transglycosylase SLT domain M482_3168 PF01557 Fumarylacetoacetate (FAA) hydrolase family M482_3169 PF03692 Putative zinc- or iron-chelating domain M482_317 PF00589 Phage integrase family M482_317 PF13356 Arm DNA-binding domain M482_3170 PF00589 Phage integrase family M482_3170 PF12167 Arm DNA-binding domain M482_3171 PF02796 Helix-turn-helix domain of resolvase M482_3171 PF00665 Integrase core domain M482_3172 PF01695 IstB-like ATP binding protein M482_3175 PF05772 NinB protein M482_3177 PF06530 Phage antitermination protein Q M482_318 PF01527 Transposase M482_32 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion M482_320 PF12697 Alpha/beta hydrolase family M482_3205 PF01797 Transposase IS200 like M482_322 PF01402 Ribbon-helix-helix protein, copG family M482_3221 PF02413 Caudovirales tail fibre assembly protein, lambda gpK M482_3223 PF00266 Aminotransferase class-V M482_3226 PF02600 Disulfide bond formation protein DsbB M482_3227 PF06450 Bacterial Na+/H+ antiporter B (NhaB) M482_3228 PF00392 Bacterial regulatory proteins, gntR family M482_3228 PF07840 FadR C-terminal domain M482_3229 PF04293 SpoVR like protein M482_323 PF00258 Flavodoxin M482_3230 PF01266 FAD dependent oxidoreductase M482_3231 PF07690 Major Facilitator Superfamily M482_3232 PF02678 Pirin M482_3232 PF05726 Pirin C-terminal cupin domain M482_3233 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M482_3233 PF03466 LysR substrate binding domain M482_3235 PF04285 Protein of unknown function (DUF444) M482_3236 PF08298 PrkA AAA domain M482_3236 PF06798 PrkA serine protein kinase C-terminal domain M482_3237 PF06629 MltA-interacting protein MipA M482_3238 PF01263 Aldose 1-epimerase M482_3239 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain M482_3239 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain M482_324 PF01475 Ferric uptake regulator family M482_3240 PF01641 SelR domain M482_3241 PF07023 Protein of unknown function (DUF1315) M482_3242 PF00857 Isochorismatase family M482_3243 PF00710 Asparaginase, N-terminal M482_3243 PF17763 Glutaminase/Asparaginase C-terminal domain M482_3244 PF01343 Peptidase family S49 M482_3245 PF00881 Nitroreductase family M482_3246 PF02769 AIR synthase related protein, C-terminal domain M482_3246 PF00586 AIR synthase related protein, N-terminal domain M482_3247 PF01131 DNA topoisomerase M482_3247 PF01751 Toprim domain M482_3248 PF07383 Protein of unknown function (DUF1496) M482_3249 PF00293 NUDIX domain M482_325 PF03174 Chitobiase/beta-hexosaminidase C-terminal domain M482_325 PF03173 Putative carbohydrate binding domain M482_325 PF02838 Glycosyl hydrolase family 20, domain 2 M482_325 PF00728 Glycosyl hydrolase family 20, catalytic domain M482_3250 PF03372 Endonuclease/Exonuclease/phosphatase family M482_3251 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M482_3251 PF03466 LysR substrate binding domain M482_3252 PF00872 Transposase, Mutator family M482_3255 PF00551 Formyl transferase M482_3255 PF01842 ACT domain M482_3256 PF02810 SEC-C motif M482_3257 PF00072 Response regulator receiver domain M482_3258 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain M482_3258 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain M482_3258 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain M482_3259 PF00872 Transposase, Mutator family M482_326 PF03173 Putative carbohydrate binding domain M482_326 PF02838 Glycosyl hydrolase family 20, domain 2 M482_326 PF00728 Glycosyl hydrolase family 20, catalytic domain M482_326 PF03174 Chitobiase/beta-hexosaminidase C-terminal domain M482_3260 PF00816 H-NS histone family M482_3261 PF00265 Thymidine kinase M482_3262 PF00171 Aldehyde dehydrogenase family M482_3262 PF00465 Iron-containing alcohol dehydrogenase M482_3263 PF01914 MarC family integral membrane protein M482_3264 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle M482_3265 PF00528 Binding-protein-dependent transport system inner membrane component M482_3266 PF00528 Binding-protein-dependent transport system inner membrane component M482_3266 PF12911 N-terminal TM domain of oligopeptide transport permease C M482_3267 PF00005 ABC transporter M482_3267 PF08352 Oligopeptide/dipeptide transporter, C-terminal region M482_3268 PF08352 Oligopeptide/dipeptide transporter, C-terminal region M482_3268 PF00005 ABC transporter M482_327 PF03573 outer membrane porin, OprD family M482_3270 PF04269 Protein of unknown function, DUF440 M482_3271 PF13091 PLD-like domain M482_3271 PF13396 Phospholipase_D-nuclease N-terminal M482_3272 PF13505 Outer membrane protein beta-barrel domain M482_3275 PF03795 YCII-related domain M482_3277 PF03544 Gram-negative bacterial TonB protein C-terminal M482_3278 PF00872 Transposase, Mutator family M482_3279 PF03061 Thioesterase superfamily M482_328 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain M482_328 PF00749 tRNA synthetases class I (E and Q), catalytic domain M482_3280 PF04279 Intracellular septation protein A M482_3284 PF03922 OmpW family M482_3286 PF00290 Tryptophan synthase alpha chain M482_3287 PF00291 Pyridoxal-phosphate dependent enzyme M482_3288 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase M482_3288 PF00218 Indole-3-glycerol phosphate synthase M482_3289 PF00591 Glycosyl transferase family, a/b domain M482_3289 PF02885 Glycosyl transferase family, helical bundle domain M482_3290 PF00117 Glutamine amidotransferase class-I M482_3291 PF00425 chorismate binding enzyme M482_3291 PF04715 Anthranilate synthase component I, N terminal region M482_3292 PF02811 PHP domain M482_3293 PF01300 Telomere recombination M482_3294 PF00849 RNA pseudouridylate synthase M482_3294 PF01479 S4 domain M482_3295 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP M482_3296 PF00106 short chain dehydrogenase M482_3297 PF01343 Peptidase family S49 M482_3297 PF08496 Peptidase family S49 N-terminal M482_3298 PF10692 Protein of unknown function (DUF2498) M482_33 PF04393 Protein of unknown function (DUF535) M482_330 PF00367 phosphotransferase system, EIIB M482_330 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 M482_330 PF02378 Phosphotransferase system, EIIC M482_3300 PF01751 Toprim domain M482_3300 PF01396 Topoisomerase DNA binding C4 zinc finger M482_3300 PF01131 DNA topoisomerase M482_3300 PF08272 Topoisomerase I zinc-ribbon-like M482_3301 PF01797 Transposase IS200 like M482_3302 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M482_3302 PF03466 LysR substrate binding domain M482_3304 PF00330 Aconitase family (aconitate hydratase) M482_3304 PF00694 Aconitase C-terminal domain M482_3305 PF00925 GTP cyclohydrolase II M482_3306 PF01569 PAP2 superfamily M482_3307 PF06305 Lipopolysaccharide assembly protein A domain M482_3308 PF18073 Rubredoxin metal binding domain M482_331 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase M482_3310 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family M482_3311 PF01253 Translation initiation factor SUI1 M482_3313 PF00596 Class II Aldolase and Adducin N-terminal domain M482_3315 PF00923 Transaldolase/Fructose-6-phosphate aldolase M482_3316 PF04328 Selenoprotein, putative M482_3317 PF13722 5TM C-terminal transporter carbon starvation CstA M482_3317 PF02554 Carbon starvation protein CstA M482_3318 PF00575 S1 RNA binding domain M482_3318 PF00773 RNB domain M482_3318 PF08206 Ribonuclease B OB domain M482_3318 PF17876 Cold shock domain M482_3319 PF07690 Major Facilitator Superfamily M482_332 PF01979 Amidohydrolase family M482_3320 PF01370 NAD dependent epimerase/dehydratase family M482_3321 PF00730 HhH-GPD superfamily base excision DNA repair protein M482_3321 PF00633 Helix-hairpin-helix motif M482_3321 PF10576 Iron-sulfur binding domain of endonuclease III M482_3322 PF02508 Rnf-Nqr subunit, membrane protein M482_3323 PF04205 FMN-binding domain M482_3324 PF03116 NQR2, RnfD, RnfE family M482_3325 PF06445 GyrI-like small molecule binding domain M482_3325 PF12833 Helix-turn-helix domain M482_3326 PF10531 SLBB domain M482_3326 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit M482_3326 PF13237 4Fe-4S dicluster domain M482_3326 PF13375 RnfC Barrel sandwich hybrid domain M482_3327 PF04060 Putative Fe-S cluster M482_3328 PF02508 Rnf-Nqr subunit, membrane protein M482_3329 PF10754 Protein of unknown function (DUF2569) M482_333 PF00480 ROK family M482_333 PF01047 MarR family M482_3330 PF00005 ABC transporter M482_3330 PF00664 ABC transporter transmembrane region M482_3330 PF03412 Peptidase C39 family M482_3331 PF00005 ABC transporter M482_3331 PF00664 ABC transporter transmembrane region M482_3332 PF13533 Biotin-lipoyl like M482_3334 PF00664 ABC transporter transmembrane region M482_3334 PF03412 Peptidase C39 family M482_3334 PF00005 ABC transporter M482_3336 PF11762 L-arabinose isomerase C-terminal domain M482_3336 PF02610 L-arabinose isomerase M482_3337 PF02782 FGGY family of carbohydrate kinases, C-terminal domain M482_3338 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family M482_3339 PF00005 ABC transporter M482_334 PF13344 Haloacid dehalogenase-like hydrolase M482_3340 PF02653 Branched-chain amino acid transport system / permease component M482_3341 PF02653 Branched-chain amino acid transport system / permease component M482_3342 PF02311 AraC-like ligand binding domain M482_3342 PF12833 Helix-turn-helix domain M482_3343 PF02894 Oxidoreductase family, C-terminal alpha/beta domain M482_3343 PF01408 Oxidoreductase family, NAD-binding Rossmann fold M482_3344 PF13593 SBF-like CPA transporter family (DUF4137) M482_3346 PF06097 Bacterial protein of unknown function (DUF945) M482_3347 PF01238 Phosphomannose isomerase type I M482_3348 PF00206 Lyase M482_3348 PF10415 Fumarase C C-terminus M482_3349 PF05472 DNA replication terminus site-binding protein (Ter protein) M482_335 PF00733 Asparagine synthase M482_335 PF13537 Glutamine amidotransferase domain M482_3350 PF07690 Major Facilitator Superfamily M482_3351 PF03466 LysR substrate binding domain M482_3351 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M482_3352 PF00480 ROK family M482_3355 PF00654 Voltage gated chloride channel M482_3356 PF06649 Protein of unknown function (DUF1161) M482_3357 PF00356 Bacterial regulatory proteins, lacI family M482_3359 PF13407 Periplasmic binding protein domain M482_3360 PF09084 NMT1/THI5 like M482_3361 PF00528 Binding-protein-dependent transport system inner membrane component M482_3362 PF00005 ABC transporter M482_3363 PF10423 Bacterial AMP nucleoside phosphorylase N-terminus M482_3363 PF01048 Phosphorylase superfamily M482_3369 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain M482_3369 PF00205 Thiamine pyrophosphate enzyme, central domain M482_3369 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain M482_3370 PF01842 ACT domain M482_3371 PF13419 Haloacid dehalogenase-like hydrolase M482_3373 PF00245 Alkaline phosphatase M482_3374 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain M482_3374 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain M482_3375 PF13545 Crp-like helix-turn-helix domain M482_3375 PF00027 Cyclic nucleotide-binding domain M482_3376 PF00582 Universal stress protein family M482_3377 PF02233 NAD(P) transhydrogenase beta subunit M482_3378 PF01262 Alanine dehydrogenase/PNT, C-terminal domain M482_3378 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch M482_3378 PF05222 Alanine dehydrogenase/PNT, N-terminal domain M482_3379 PF07338 Protein of unknown function (DUF1471) M482_3380 PF13520 Amino acid permease M482_3382 PF00486 Transcriptional regulatory protein, C terminal M482_3382 PF00072 Response regulator receiver domain M482_3383 PF00512 His Kinase A (phospho-acceptor) domain M482_3383 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M482_3383 PF00672 HAMP domain M482_3384 PF02074 Carboxypeptidase Taq (M32) metallopeptidase M482_3386 PF18807 Tripartite Tc toxins repeat M482_3386 PF14431 YwqJ-like deaminase M482_3388 PF04264 YceI-like domain M482_3389 PF01292 Prokaryotic cytochrome b561 M482_3391 PF00089 Trypsin M482_3394 PF04408 Helicase associated domain (HA2) M482_3394 PF00271 Helicase conserved C-terminal domain M482_3394 PF00270 DEAD/DEAH box helicase M482_3394 PF11898 Domain of unknown function (DUF3418) M482_3394 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold M482_3395 PF02525 Flavodoxin-like fold M482_3396 PF00325 Bacterial regulatory proteins, crp family M482_3396 PF04198 Putative sugar-binding domain M482_3397 PF01232 Mannitol dehydrogenase Rossmann domain M482_3397 PF08125 Mannitol dehydrogenase C-terminal domain M482_3398 PF07027 Protein of unknown function (DUF1318) M482_3399 PF13617 YnbE-like lipoprotein M482_34 PF11398 Protein of unknown function (DUF2813) M482_3400 PF11739 Dicarboxylate transport M482_3401 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain M482_3401 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain M482_3402 PF03724 META domain M482_3403 PF03891 Domain of unknown function (DUF333) M482_3404 PF02308 MgtC family M482_3405 PF00893 Small Multidrug Resistance protein M482_3406 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg M482_3406 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II M482_3406 PF10371 Domain of unknown function M482_3406 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase M482_3406 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain M482_3407 PF01171 PP-loop family M482_3409 PF07859 alpha/beta hydrolase fold M482_3409 PF13472 GDSL-like Lipase/Acylhydrolase family M482_3411 PF01544 CorA-like Mg2+ transporter protein M482_3412 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle M482_3413 PF00246 Zinc carboxypeptidase M482_3414 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain M482_3414 PF13378 Enolase C-terminal domain-like M482_3415 PF08534 Redoxin M482_3416 PF02796 Helix-turn-helix domain of resolvase M482_3416 PF00665 Integrase core domain M482_3417 PF01695 IstB-like ATP binding protein M482_3419 PF18024 Helix-turn-helix domain M482_3419 PF00158 Sigma-54 interaction domain M482_342 PF01494 FAD binding domain M482_3422 PF05128 Domain of unknown function (DUF697) M482_3423 PF04317 YcjX-like family, DUF463 M482_3425 PF04024 PspC domain M482_3426 PF06667 Phage shock protein B M482_3427 PF04012 PspA/IM30 family M482_3428 PF02954 Bacterial regulatory protein, Fis family M482_3428 PF00158 Sigma-54 interaction domain M482_343 PF01938 TRAM domain M482_343 PF04055 Radical SAM superfamily M482_343 PF00919 Uncharacterized protein family UPF0004 M482_3430 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle M482_3431 PF00528 Binding-protein-dependent transport system inner membrane component M482_3432 PF00528 Binding-protein-dependent transport system inner membrane component M482_3432 PF12911 N-terminal TM domain of oligopeptide transport permease C M482_3433 PF08352 Oligopeptide/dipeptide transporter, C-terminal region M482_3433 PF00005 ABC transporter M482_3434 PF00005 ABC transporter M482_3437 PF00854 POT family M482_3438 PF04893 Yip1 domain M482_3439 PF11656 YjbD family (DUF3811) M482_344 PF02562 PhoH-like protein M482_3440 PF00043 Glutathione S-transferase, C-terminal domain M482_3440 PF02798 Glutathione S-transferase, N-terminal domain M482_3441 PF08543 Phosphomethylpyrimidine kinase M482_3442 PF01479 S4 domain M482_3442 PF00579 tRNA synthetases class I (W and Y) M482_3443 PF01243 Pyridoxamine 5'-phosphate oxidase M482_3443 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region M482_3444 PF09864 Membrane-bound lysozyme-inhibitor of c-type lysozyme M482_3445 PF03702 Anhydro-N-acetylmuramic acid kinase M482_3446 PF05433 Glycine zipper 2TM domain M482_3447 PF01047 MarR family M482_3448 PF00248 Aldo/keto reductase family M482_3449 PF06945 Protein of unknown function (DUF1289) M482_345 PF02130 Uncharacterized protein family UPF0054 M482_3450 PF08019 Phosphoethanolamine transferase EptA/EptB M482_3450 PF00884 Sulfatase M482_3451 PF16925 Tetracyclin repressor-like, C-terminal domain M482_3451 PF00440 Bacterial regulatory proteins, tetR family M482_3452 PF00724 NADH:flavin oxidoreductase / NADH oxidase family M482_3453 PF18807 Tripartite Tc toxins repeat M482_3453 PF14431 YwqJ-like deaminase M482_3454 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily M482_3455 PF00929 Exonuclease M482_3456 PF00462 Glutaredoxin M482_3458 PF00877 NlpC/P60 family M482_3459 PF02777 Iron/manganese superoxide dismutases, C-terminal domain M482_3459 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain M482_346 PF03471 Transporter associated domain M482_346 PF00571 CBS domain M482_3461 PF00356 Bacterial regulatory proteins, lacI family M482_3462 PF03466 LysR substrate binding domain M482_3462 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M482_3463 PF07690 Major Facilitator Superfamily M482_3465 PF00677 Lumazine binding domain M482_3466 PF01554 MatE M482_3469 PF02887 Pyruvate kinase, alpha/beta domain M482_3469 PF00224 Pyruvate kinase, barrel domain M482_347 PF00795 Carbon-nitrogen hydrolase M482_3470 PF04728 Lipoprotein leucine-zipper M482_3472 PF02796 Helix-turn-helix domain of resolvase M482_3472 PF00665 Integrase core domain M482_3473 PF01695 IstB-like ATP binding protein M482_3474 PF17969 L,D-transpeptidase C-terminal domain M482_3474 PF01476 LysM domain M482_3474 PF03734 L,D-transpeptidase catalytic domain M482_3475 PF02657 Fe-S metabolism associated domain M482_3476 PF00266 Aminotransferase class-V M482_3477 PF01458 Uncharacterized protein family (UPF0051) M482_3478 PF00005 ABC transporter M482_3479 PF01458 Uncharacterized protein family (UPF0051) M482_348 PF00497 Bacterial extracellular solute-binding proteins, family 3 M482_3480 PF01521 Iron-sulphur cluster biosynthesis M482_3481 PF03061 Thioesterase superfamily M482_3482 PF02913 FAD linked oxidases, C-terminal domain M482_3482 PF13183 4Fe-4S dicluster domain M482_3482 PF01565 FAD binding domain M482_3483 PF01594 AI-2E family transporter M482_3484 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain M482_3484 PF00391 PEP-utilising enzyme, mobile domain M482_3484 PF02896 PEP-utilising enzyme, TIM barrel domain M482_3485 PF03618 Kinase/pyrophosphorylase M482_3486 PF00793 DAHP synthetase I family M482_3487 PF02696 Uncharacterized ACR, YdiU/UPF0061 family M482_3488 PF10437 Bacterial lipoate protein ligase C-terminus M482_3488 PF03099 Biotin/lipoate A/B protein ligase family M482_3489 PF00877 NlpC/P60 family M482_349 PF00528 Binding-protein-dependent transport system inner membrane component M482_3491 PF00892 EamA-like transporter family M482_3492 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase M482_3493 PF01522 Polysaccharide deacetylase M482_3494 PF00551 Formyl transferase M482_3494 PF01370 NAD dependent epimerase/dehydratase family M482_3494 PF02911 Formyl transferase, C-terminal domain M482_3495 PF00535 Glycosyl transferase family 2 M482_3496 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family M482_3497 PF00005 ABC transporter M482_3498 PF00255 Glutathione peroxidase M482_3499 PF01032 FecCD transport family M482_35 PF03956 Lysine exporter LysO M482_350 PF00528 Binding-protein-dependent transport system inner membrane component M482_3501 PF00216 Bacterial DNA-binding protein M482_3502 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain M482_3502 PF03483 B3/4 domain M482_3502 PF03147 Ferredoxin-fold anticodon binding domain M482_3502 PF01588 Putative tRNA binding domain M482_3502 PF03484 tRNA synthetase B5 domain M482_3503 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain M482_3503 PF01409 tRNA synthetases class II core domain (F) M482_3504 PF00453 Ribosomal protein L20 M482_3505 PF01632 Ribosomal protein L35 M482_3506 PF05198 Translation initiation factor IF-3, N-terminal domain M482_3506 PF00707 Translation initiation factor IF-3, C-terminal domain M482_3507 PF03129 Anticodon binding domain M482_3507 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain M482_3507 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) M482_3507 PF02824 TGS domain M482_3508 PF13619 KTSC domain M482_351 PF00005 ABC transporter M482_3510 PF01914 MarC family integral membrane protein M482_3511 PF01464 Transglycosylase SLT domain M482_3512 PF01297 Zinc-uptake complex component A periplasmic M482_3513 PF00005 ABC transporter M482_3514 PF00950 ABC 3 transport family M482_3515 PF00950 ABC 3 transport family M482_3517 PF14002 YniB-like protein M482_3518 PF13419 Haloacid dehalogenase-like hydrolase M482_3519 PF00872 Transposase, Mutator family M482_352 PF07295 Zinc-ribbon containing domain M482_3520 PF07883 Cupin domain M482_3521 PF04962 KduI/IolB family M482_3523 PF06917 Periplasmic pectate lyase M482_3524 PF00528 Binding-protein-dependent transport system inner membrane component M482_3525 PF00528 Binding-protein-dependent transport system inner membrane component M482_3526 PF03459 TOBE domain M482_3526 PF17912 MalK OB fold domain M482_3526 PF00005 ABC transporter M482_3527 PF01547 Bacterial extracellular solute-binding protein M482_3528 PF06178 Oligogalacturonate-specific porin protein (KdgM) M482_3529 PF04307 LexA-binding, inner membrane-associated putative hydrolase M482_353 PF00133 tRNA synthetases class I (I, L, M and V) M482_353 PF08264 Anticodon-binding domain of tRNA M482_353 PF13603 Leucyl-tRNA synthetase, Domain 2 M482_3531 PF01510 N-acetylmuramoyl-L-alanine amidase M482_3532 PF01614 Bacterial transcriptional regulator M482_3532 PF09339 IclR helix-turn-helix domain M482_3533 PF14583 Oligogalacturonate lyase M482_3534 PF07690 Major Facilitator Superfamily M482_3535 PF02753 Pili assembly chaperone PapD, C-terminal domain M482_3535 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain M482_3537 PF00577 Outer membrane usher protein M482_3537 PF13954 PapC N-terminal domain M482_3537 PF13953 PapC C-terminal domain M482_3538 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain M482_3538 PF02753 Pili assembly chaperone PapD, C-terminal domain M482_3539 PF00419 Fimbrial protein M482_354 PF04390 Lipopolysaccharide-assembly M482_3540 PF01435 Peptidase family M48 M482_3542 PF00595 PDZ domain M482_3542 PF11818 C-terminal domain of tail specific protease (DUF3340) M482_3542 PF17804 Tail specific protease N-terminal domain M482_3542 PF03572 Peptidase family S41 M482_3543 PF17516 ProQ C-terminal domain M482_3543 PF04352 ProQ/FINO family M482_3544 PF13185 GAF domain M482_3545 PF04403 Paraquat-inducible protein A M482_3546 PF02470 MlaD protein M482_355 PF06144 DNA polymerase III, delta subunit M482_355 PF14840 Processivity clamp loader gamma complex DNA pol III C-term M482_3550 PF02753 Pili assembly chaperone PapD, C-terminal domain M482_3550 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain M482_3553 PF07351 Protein of unknown function (DUF1480) M482_3555 PF02796 Helix-turn-helix domain of resolvase M482_3555 PF00665 Integrase core domain M482_3556 PF01695 IstB-like ATP binding protein M482_356 PF01467 Cytidylyltransferase-like M482_3562 PF00842 Alanine racemase, C-terminal domain M482_3562 PF01168 Alanine racemase, N-terminal domain M482_3565 PF05658 Head domain of trimeric autotransporter adhesin M482_3565 PF03895 YadA-like membrane anchor domain M482_3565 PF13018 Extended Signal Peptide of Type V secretion system M482_3565 PF05662 Coiled stalk of trimeric autotransporter adhesin M482_3566 PF13018 Extended Signal Peptide of Type V secretion system M482_3566 PF05662 Coiled stalk of trimeric autotransporter adhesin M482_3566 PF05658 Head domain of trimeric autotransporter adhesin M482_3566 PF03895 YadA-like membrane anchor domain M482_3567 PF01510 N-acetylmuramoyl-L-alanine amidase M482_3568 PF04344 Chemotaxis phosphatase, CheZ M482_3569 PF00072 Response regulator receiver domain M482_3570 PF01339 CheB methylesterase M482_3570 PF00072 Response regulator receiver domain M482_3571 PF01739 CheR methyltransferase, SAM binding domain M482_3571 PF03705 CheR methyltransferase, all-alpha domain M482_3572 PF00672 HAMP domain M482_3572 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain M482_3572 PF02203 Tar ligand binding domain homologue M482_3573 PF02203 Tar ligand binding domain homologue M482_3573 PF00672 HAMP domain M482_3573 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain M482_3576 PF12951 Passenger-associated-transport-repeat M482_3577 PF08348 YheO-like PAS domain M482_3577 PF13309 HTH domain M482_3579 PF01042 Endoribonuclease L-PSP M482_358 PF02590 Predicted SPOUT methyltransferase M482_3580 PF07690 Major Facilitator Superfamily M482_3581 PF01584 CheW-like domain M482_3582 PF09078 CheY binding M482_3582 PF01627 Hpt domain M482_3582 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M482_3582 PF02895 Signal transducing histidine kinase, homodimeric domain M482_3582 PF01584 CheW-like domain M482_3583 PF13677 Membrane MotB of proton-channel complex MotA/MotB M482_3583 PF00691 OmpA family M482_3584 PF01618 MotA/TolQ/ExbB proton channel family M482_3585 PF05280 Flagellar transcriptional activator (FlhC) M482_3586 PF05247 Flagellar transcriptional activator (FlhD) M482_3587 PF00690 Cation transporter/ATPase, N-terminus M482_3587 PF00689 Cation transporting ATPase, C-terminus M482_3588 PF02308 MgtC family M482_3589 PF02203 Tar ligand binding domain homologue M482_3589 PF00672 HAMP domain M482_3589 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain M482_359 PF03717 Penicillin-binding Protein dimerisation domain M482_359 PF00905 Penicillin binding protein transpeptidase domain M482_3590 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain M482_3590 PF00672 HAMP domain M482_3590 PF02203 Tar ligand binding domain homologue M482_3591 PF10781 Dextransucrase DSRB M482_3592 PF00313 'Cold-shock' DNA-binding domain M482_3593 PF02837 Glycosyl hydrolases family 2, sugar binding domain M482_3593 PF16353 Domain of unknown function(DUF4981) M482_3593 PF00703 Glycosyl hydrolases family 2 M482_3593 PF02929 Beta galactosidase small chain M482_3593 PF02836 Glycosyl hydrolases family 2, TIM barrel domain M482_3594 PF00109 Beta-ketoacyl synthase, N-terminal domain M482_3594 PF16197 Ketoacyl-synthetase C-terminal extension M482_3594 PF02801 Beta-ketoacyl synthase, C-terminal domain M482_3594 PF00698 Acyl transferase domain M482_3594 PF08240 Alcohol dehydrogenase GroES-like domain M482_3594 PF00550 Phosphopantetheine attachment site M482_3594 PF08659 KR domain M482_3594 PF00107 Zinc-binding dehydrogenase M482_3594 PF14765 Polyketide synthase dehydratase M482_3595 PF10777 Inner membrane protein YlaC M482_3596 PF13404 AsnC-type helix-turn-helix domain M482_3596 PF01037 Lrp/AsnC ligand binding domain M482_3598 PF14001 YdfZ protein M482_3599 PF00328 Histidine phosphatase superfamily (branch 2) M482_36 PF03063 Prismane/CO dehydrogenase family M482_360 PF01098 Cell cycle protein M482_3601 PF01638 HxlR-like helix-turn-helix M482_3602 PF05368 NmrA-like family M482_3603 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain M482_3603 PF08447 PAS fold M482_3605 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family M482_3605 PF00356 Bacterial regulatory proteins, lacI family M482_3606 PF00180 Isocitrate/isopropylmalate dehydrogenase M482_3607 PF00849 RNA pseudouridylate synthase M482_3608 PF00293 NUDIX domain M482_361 PF05036 Sporulation related domain M482_361 PF03330 Lytic transglycolase M482_3610 PF04356 Protein of unknown function (DUF489) M482_3611 PF08328 Adenylosuccinate lyase C-terminal M482_3611 PF00206 Lyase M482_3613 PF00486 Transcriptional regulatory protein, C terminal M482_3613 PF00072 Response regulator receiver domain M482_3614 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M482_3614 PF08918 PhoQ Sensor M482_3615 PF08007 Cupin superfamily protein M482_3616 PF01546 Peptidase family M20/M25/M40 M482_3616 PF07687 Peptidase dimerisation domain M482_3617 PF02146 Sir2 family M482_3618 PF00480 ROK family M482_3619 PF12704 MacB-like periplasmic core domain M482_3619 PF02687 FtsX-like permease family M482_362 PF00768 D-alanyl-D-alanine carboxypeptidase M482_362 PF07943 Penicillin-binding protein 5, C-terminal domain M482_3620 PF00005 ABC transporter M482_3621 PF02687 FtsX-like permease family M482_3621 PF12704 MacB-like periplasmic core domain M482_3622 PF03461 TRCF domain M482_3622 PF00271 Helicase conserved C-terminal domain M482_3622 PF17757 UvrB interaction domain M482_3622 PF02559 CarD-like/TRCF domain M482_3622 PF00270 DEAD/DEAH box helicase M482_3623 PF05433 Glycine zipper 2TM domain M482_3624 PF00872 Transposase, Mutator family M482_3627 PF07992 Pyridine nucleotide-disulphide oxidoreductase M482_3628 PF05728 Uncharacterised protein family (UPF0227) M482_3629 PF00933 Glycosyl hydrolase family 3 N terminal domain M482_363 PF04359 Protein of unknown function (DUF493) M482_3630 PF01636 Phosphotransferase enzyme family M482_3631 PF08139 Prokaryotic membrane lipoprotein lipid attachment site M482_3631 PF13036 Peptidoglycan-synthase activator LpoB M482_3632 PF07233 Protein of unknown function (DUF1425) M482_3633 PF01230 HIT domain M482_3634 PF08501 Shikimate dehydrogenase substrate binding domain M482_3636 PF00367 phosphotransferase system, EIIB M482_3636 PF02378 Phosphotransferase system, EIIC M482_3637 PF01026 TatD related DNase M482_3638 PF09115 DNA polymerase III, delta subunit, C terminal M482_3639 PF02223 Thymidylate kinase M482_364 PF03099 Biotin/lipoate A/B protein ligase family M482_3640 PF02618 YceG-like family M482_3641 PF01063 Amino-transferase class IV M482_3642 PF01797 Transposase IS200 like M482_3643 PF00109 Beta-ketoacyl synthase, N-terminal domain M482_3643 PF02801 Beta-ketoacyl synthase, C-terminal domain M482_3644 PF00550 Phosphopantetheine attachment site M482_3646 PF00698 Acyl transferase domain M482_3647 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III M482_3647 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal M482_3648 PF02504 Fatty acid synthesis protein M482_3649 PF01783 Ribosomal L32p protein family M482_365 PF04055 Radical SAM superfamily M482_365 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family M482_3650 PF02620 Large ribosomal RNA subunit accumulation protein YceD M482_3651 PF02545 Maf-like protein M482_3652 PF01479 S4 domain M482_3652 PF00849 RNA pseudouridylate synthase M482_3653 PF12111 Polyribonucleotide phosphorylase C terminal M482_3653 PF10150 Ribonuclease E/G family M482_3653 PF00575 S1 RNA binding domain M482_3654 PF03992 Antibiotic biosynthesis monooxygenase M482_3655 PF01979 Amidohydrolase family M482_3656 PF06183 DinI-like family M482_3657 PF00872 Transposase, Mutator family M482_3658 PF13991 BssS protein family M482_3659 PF01266 FAD dependent oxidoreductase M482_366 PF02416 mttA/Hcf106 family M482_3660 PF00196 Bacterial regulatory proteins, luxR family M482_3661 PF01594 AI-2E family transporter M482_3665 PF03472 Autoinducer binding domain M482_3665 PF00196 Bacterial regulatory proteins, luxR family M482_3666 PF00765 Autoinducer synthase M482_3667 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M482_3667 PF03466 LysR substrate binding domain M482_3669 PF00083 Sugar (and other) transporter M482_367 PF02537 CrcB-like protein, Camphor Resistance (CrcB) M482_3671 PF00248 Aldo/keto reductase family M482_3672 PF09618 CRISPR-associated protein (Cas_Csy4) M482_3673 PF09615 CRISPR-associated protein (Cas_Csy3) M482_3674 PF09614 CRISPR-associated protein (Cas_Csy2) M482_3675 PF09611 CRISPR-associated protein (Cas_Csy1) M482_3677 PF01867 CRISPR associated protein Cas1 M482_3678 PF00924 Mechanosensitive ion channel M482_368 PF00313 'Cold-shock' DNA-binding domain M482_3682 PF04041 beta-1,4-mannooligosaccharide phosphorylase M482_3683 PF00528 Binding-protein-dependent transport system inner membrane component M482_3684 PF00528 Binding-protein-dependent transport system inner membrane component M482_3686 PF00356 Bacterial regulatory proteins, lacI family M482_3687 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I M482_3687 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II M482_3687 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III M482_3687 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain M482_3688 PF17912 MalK OB fold domain M482_3688 PF00005 ABC transporter M482_3689 PF00872 Transposase, Mutator family M482_369 PF00313 'Cold-shock' DNA-binding domain M482_3691 PF05860 haemagglutination activity domain M482_3691 PF05594 Haemagluttinin repeat M482_3691 PF15526 Novel toxin 21 M482_3691 PF04829 Pre-toxin domain with VENN motif M482_3691 PF13332 Hemagglutinin repeat M482_3695 PF04829 Pre-toxin domain with VENN motif M482_3695 PF05860 haemagglutination activity domain M482_3695 PF13332 Hemagglutinin repeat M482_3695 PF13018 Extended Signal Peptide of Type V secretion system M482_3698 PF13018 Extended Signal Peptide of Type V secretion system M482_3698 PF13332 Hemagglutinin repeat M482_3698 PF04829 Pre-toxin domain with VENN motif M482_3698 PF05860 haemagglutination activity domain M482_3699 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB M482_3699 PF17287 POTRA domain M482_3699 PF08479 POTRA domain, ShlB-type M482_37 PF00970 Oxidoreductase FAD-binding domain M482_37 PF00111 2Fe-2S iron-sulfur cluster binding domain M482_37 PF00175 Oxidoreductase NAD-binding domain M482_370 PF00196 Bacterial regulatory proteins, luxR family M482_3700 PF00970 Oxidoreductase FAD-binding domain M482_3700 PF00111 2Fe-2S iron-sulfur cluster binding domain M482_3700 PF00175 Oxidoreductase NAD-binding domain M482_3701 PF00848 Ring hydroxylating alpha subunit (catalytic domain) M482_3701 PF00355 Rieske [2Fe-2S] domain M482_3702 PF02028 BCCT, betaine/carnitine/choline family transporter M482_3703 PF00180 Isocitrate/isopropylmalate dehydrogenase M482_3704 PF03466 LysR substrate binding domain M482_3704 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M482_3705 PF00356 Bacterial regulatory proteins, lacI family M482_3706 PF02653 Branched-chain amino acid transport system / permease component M482_3707 PF00005 ABC transporter M482_3708 PF00005 ABC transporter M482_3709 PF13407 Periplasmic binding protein domain M482_3710 PF08240 Alcohol dehydrogenase GroES-like domain M482_3710 PF00107 Zinc-binding dehydrogenase M482_3714 PF13505 Outer membrane protein beta-barrel domain M482_3715 PF00892 EamA-like transporter family M482_3717 PF13649 Methyltransferase domain M482_3718 PF00210 Ferritin-like domain M482_3720 PF00497 Bacterial extracellular solute-binding proteins, family 3 M482_3721 PF00528 Binding-protein-dependent transport system inner membrane component M482_3722 PF00005 ABC transporter M482_3723 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain M482_3723 PF13426 PAS domain M482_3723 PF08447 PAS fold M482_3724 PF05971 RNA methyltransferase M482_3725 PF07338 Protein of unknown function (DUF1471) M482_3726 PF02885 Glycosyl transferase family, helical bundle domain M482_3727 PF00501 AMP-binding enzyme M482_3727 PF13193 AMP-binding enzyme C-terminal domain M482_3728 PF13378 Enolase C-terminal domain-like M482_3729 PF00378 Enoyl-CoA hydratase/isomerase M482_3730 PF12697 Alpha/beta hydrolase family M482_3731 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain M482_3731 PF16582 Middle domain of thiamine pyrophosphate M482_3731 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain M482_3732 PF00425 chorismate binding enzyme M482_3734 PF05957 Bacterial protein of unknown function (DUF883) M482_3736 PF00920 Dehydratase family M482_3737 PF03928 Haem-degrading M482_3738 PF07690 Major Facilitator Superfamily M482_3739 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain M482_3739 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain M482_3740 PF00356 Bacterial regulatory proteins, lacI family M482_3742 PF00106 short chain dehydrogenase M482_3743 PF01202 Shikimate kinase M482_3744 PF04074 YhcH/YjgK/YiaL M482_3746 PF00361 Proton-conducting membrane transporter M482_3747 PF00361 Proton-conducting membrane transporter M482_3748 PF00361 Proton-conducting membrane transporter M482_3748 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus M482_3749 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L M482_375 PF00005 ABC transporter M482_375 PF00664 ABC transporter transmembrane region M482_3750 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 M482_3751 PF12838 4Fe-4S dicluster domain M482_3752 PF00146 NADH dehydrogenase M482_3753 PF01568 Molydopterin dinucleotide binding domain M482_3753 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region M482_3753 PF00384 Molybdopterin oxidoreductase M482_3753 PF04879 Molybdopterin oxidoreductase Fe4S4 domain M482_3754 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit M482_3754 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region M482_3754 PF10531 SLBB domain M482_3756 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit M482_3756 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit M482_3757 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit M482_3758 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 M482_3759 PF03466 LysR substrate binding domain M482_3759 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M482_3760 PF00155 Aminotransferase class I and II M482_3762 PF03600 Citrate transporter M482_3762 PF02080 TrkA-C domain M482_3763 PF13419 Haloacid dehalogenase-like hydrolase M482_3764 PF03887 YfbU domain M482_3765 PF04217 Protein of unknown function, DUF412 M482_3766 PF00871 Acetokinase family M482_3767 PF07085 DRTGG domain M482_3767 PF01515 Phosphate acetyl/butaryl transferase M482_3768 PF00356 Bacterial regulatory proteins, lacI family M482_3768 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family M482_3769 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 M482_377 PF04962 KduI/IolB family M482_3771 PF03611 PTS system sugar-specific permease component M482_3772 PF00293 NUDIX domain M482_3773 PF12850 Calcineurin-like phosphoesterase superfamily domain M482_3774 PF12850 Calcineurin-like phosphoesterase superfamily domain M482_3776 PF08338 Domain of unknown function (DUF1731) M482_3776 PF01370 NAD dependent epimerase/dehydratase family M482_3777 PF00005 ABC transporter M482_3778 PF00528 Binding-protein-dependent transport system inner membrane component M482_3779 PF00528 Binding-protein-dependent transport system inner membrane component M482_378 PF01261 Xylose isomerase-like TIM barrel M482_3780 PF00497 Bacterial extracellular solute-binding proteins, family 3 M482_3781 PF02441 Flavoprotein M482_3782 PF00156 Phosphoribosyl transferase domain M482_3783 PF02674 Colicin V production protein M482_3784 PF05036 Sporulation related domain M482_3785 PF02875 Mur ligase family, glutamate ligase domain M482_3785 PF08245 Mur ligase middle domain M482_3786 PF17848 Acetyl-coA carboxylase zinc finger domain M482_3786 PF01039 Carboxyl transferase domain M482_3787 PF09335 SNARE associated Golgi protein M482_3788 PF01416 tRNA pseudouridine synthase M482_3789 PF02774 Semialdehyde dehydrogenase, dimerisation domain M482_3789 PF01118 Semialdehyde dehydrogenase, NAD binding domain M482_379 PF00294 pfkB family carbohydrate kinase M482_3790 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain M482_3790 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain M482_3790 PF11890 Domain of unknown function (DUF3410) M482_3792 PF00892 EamA-like transporter family M482_3794 PF00419 Fimbrial protein M482_3795 PF01177 Asp/Glu/Hydantoin racemase M482_3796 PF00109 Beta-ketoacyl synthase, N-terminal domain M482_3796 PF02801 Beta-ketoacyl synthase, C-terminal domain M482_3797 PF01266 FAD dependent oxidoreductase M482_3797 PF05430 S-adenosyl-L-methionine-dependent methyltransferase M482_3798 PF08891 YfcL protein M482_3799 PF04315 Elongation factor P hydroxylase M482_38 PF00205 Thiamine pyrophosphate enzyme, central domain M482_38 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain M482_38 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain M482_380 PF02894 Oxidoreductase family, C-terminal alpha/beta domain M482_380 PF01408 Oxidoreductase family, NAD-binding Rossmann fold M482_3800 PF01925 Sulfite exporter TauE/SafE M482_3801 PF03411 Penicillin-insensitive murein endopeptidase M482_3802 PF01264 Chorismate synthase M482_3803 PF05175 Methyltransferase small domain M482_3804 PF01713 Smr domain M482_3805 PF00300 Histidine phosphatase superfamily (branch 1) M482_3806 PF00378 Enoyl-CoA hydratase/isomerase M482_3806 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain M482_3806 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain M482_3807 PF02803 Thiolase, C-terminal domain M482_3807 PF00108 Thiolase, N-terminal domain M482_3808 PF04175 Protein of unknown function (DUF406) M482_3809 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) M482_381 PF02653 Branched-chain amino acid transport system / permease component M482_3810 PF04333 MlaA lipoprotein M482_3811 PF03918 Cytochrome C biogenesis protein M482_3812 PF03918 Cytochrome C biogenesis protein M482_3813 PF08534 Redoxin M482_3814 PF01578 Cytochrome C assembly protein M482_3814 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal M482_3815 PF03100 CcmE M482_3816 PF04995 Heme exporter protein D (CcmD) M482_3817 PF01578 Cytochrome C assembly protein M482_3818 PF03379 CcmB protein M482_3819 PF00005 ABC transporter M482_382 PF00005 ABC transporter M482_3822 PF04011 LemA family M482_3824 PF08274 PhnA Zinc-Ribbon M482_3824 PF03831 PhnA domain M482_383 PF13407 Periplasmic binding protein domain M482_3830 PF04717 Type VI secretion system, phage-baseplate injector M482_3834 PF01695 IstB-like ATP binding protein M482_3835 PF02796 Helix-turn-helix domain of resolvase M482_3835 PF00665 Integrase core domain M482_384 PF01408 Oxidoreductase family, NAD-binding Rossmann fold M482_384 PF02894 Oxidoreductase family, C-terminal alpha/beta domain M482_3843 PF13953 PapC C-terminal domain M482_3843 PF13954 PapC N-terminal domain M482_3843 PF00577 Outer membrane usher protein M482_3844 PF00872 Transposase, Mutator family M482_3845 PF00577 Outer membrane usher protein M482_3845 PF13954 PapC N-terminal domain M482_3845 PF13953 PapC C-terminal domain M482_3846 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain M482_3846 PF02753 Pili assembly chaperone PapD, C-terminal domain M482_3847 PF16970 Type-1 fimbrial protein, A M482_3848 PF00004 ATPase family associated with various cellular activities (AAA) M482_3848 PF17871 AAA lid domain M482_3848 PF10431 C-terminal, D2-small domain, of ClpB protein M482_3848 PF07724 AAA domain (Cdc48 subfamily) M482_385 PF01408 Oxidoreductase family, NAD-binding Rossmann fold M482_385 PF02894 Oxidoreductase family, C-terminal alpha/beta domain M482_3858 PF13406 Transglycosylase SLT domain M482_386 PF00205 Thiamine pyrophosphate enzyme, central domain M482_386 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain M482_386 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain M482_3860 PF00528 Binding-protein-dependent transport system inner membrane component M482_3861 PF00005 ABC transporter M482_3863 PF05638 Type VI secretion system effector, Hcp M482_3865 PF01568 Molydopterin dinucleotide binding domain M482_3865 PF04879 Molybdopterin oxidoreductase Fe4S4 domain M482_3865 PF00384 Molybdopterin oxidoreductase M482_3866 PF12800 4Fe-4S binding domain M482_3866 PF13247 4Fe-4S dicluster domain M482_3867 PF04976 DMSO reductase anchor subunit (DmsC) M482_3868 PF02613 Nitrate reductase delta subunit M482_387 PF00171 Aldehyde dehydrogenase family M482_3870 PF05643 Putative bacterial lipoprotein (DUF799) M482_3872 PF03783 Curli production assembly/transport component CsgG M482_3874 PF01292 Prokaryotic cytochrome b561 M482_3875 PF00155 Aminotransferase class I and II M482_3876 PF07350 Protein of unknown function (DUF1479) M482_3877 PF02685 Glucokinase M482_3879 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M482_3879 PF03466 LysR substrate binding domain M482_3880 PF00248 Aldo/keto reductase family M482_3882 PF01566 Natural resistance-associated macrophage protein M482_3883 PF07662 Na+ dependent nucleoside transporter C-terminus M482_3883 PF01773 Na+ dependent nucleoside transporter N-terminus M482_3883 PF07670 Nucleoside recognition M482_3887 PF00749 tRNA synthetases class I (E and Q), catalytic domain M482_3889 PF01797 Transposase IS200 like M482_3892 PF12843 Putative quorum-sensing-regulated virulence factor M482_3893 PF00533 BRCA1 C Terminus (BRCT) domain M482_3893 PF01653 NAD-dependent DNA ligase adenylation domain M482_3893 PF03120 NAD-dependent DNA ligase OB-fold domain M482_3893 PF12826 Helix-hairpin-helix motif M482_3893 PF03119 NAD-dependent DNA ligase C4 zinc finger domain M482_3894 PF04354 ZipA, C-terminal FtsZ-binding domain M482_3896 PF00291 Pyridoxal-phosphate dependent enzyme M482_3897 PF00381 PTS HPr component phosphorylation site M482_3898 PF00391 PEP-utilising enzyme, mobile domain M482_3898 PF05524 PEP-utilising enzyme, N-terminal M482_3898 PF02896 PEP-utilising enzyme, TIM barrel domain M482_3899 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 M482_39 PF01212 Beta-eliminating lyase M482_3902 PF16527 Two-component sensor protein CpxA, periplasmic domain M482_3902 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M482_3902 PF00672 HAMP domain M482_3902 PF00512 His Kinase A (phospho-acceptor) domain M482_3903 PF00486 Transcriptional regulatory protein, C terminal M482_3903 PF00072 Response regulator receiver domain M482_3904 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion M482_3905 PF00005 ABC transporter M482_3905 PF02687 FtsX-like permease family M482_3905 PF12704 MacB-like periplasmic core domain M482_3906 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain M482_3906 PF07992 Pyridine nucleotide-disulphide oxidoreductase M482_3907 PF00474 Sodium:solute symporter family M482_3909 PF00557 Metallopeptidase family M24 M482_3909 PF05195 Aminopeptidase P, N-terminal domain M482_3911 PF00155 Aminotransferase class I and II M482_3913 PF00672 HAMP domain M482_3913 PF00512 His Kinase A (phospho-acceptor) domain M482_3913 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M482_3914 PF00072 Response regulator receiver domain M482_3914 PF00486 Transcriptional regulatory protein, C terminal M482_3916 PF00291 Pyridoxal-phosphate dependent enzyme M482_3917 PF00005 ABC transporter M482_3918 PF00528 Binding-protein-dependent transport system inner membrane component M482_3919 PF00528 Binding-protein-dependent transport system inner membrane component M482_392 PF07703 Alpha-2-macroglobulin bait region domain M482_392 PF17972 Bacterial Alpha-2-macroglobulin MG5 domain M482_392 PF17973 Bacterial Alpha-2-macroglobulin MG10 domain M482_392 PF00207 Alpha-2-macroglobulin family M482_392 PF01835 MG2 domain M482_392 PF17962 Bacterial macroglobulin domain 6 M482_392 PF11974 Bacterial alpha-2-macroglobulin MG3 domain M482_3921 PF07690 Major Facilitator Superfamily M482_3922 PF01418 Helix-turn-helix domain, rpiR family M482_3922 PF01380 SIS domain M482_3923 PF04074 YhcH/YjgK/YiaL M482_3924 PF00480 ROK family M482_3925 PF12468 Type III secretion system leucine rich repeat protein M482_3926 PF04131 Putative N-acetylmannosamine-6-phosphate epimerase M482_3927 PF00701 Dihydrodipicolinate synthetase family M482_3928 PF04261 Dyp-type peroxidase family M482_3929 PF06572 Protein of unknown function (DUF1131) M482_393 PF00905 Penicillin binding protein transpeptidase domain M482_393 PF00912 Transglycosylase M482_393 PF06832 Penicillin-Binding Protein C-terminus Family M482_3931 PF04076 Bacterial OB fold (BOF) protein M482_3932 PF13018 Extended Signal Peptide of Type V secretion system M482_3932 PF03212 Pertactin M482_3932 PF16168 Adhesin of bacterial autotransporter system, probable stalk M482_3932 PF03797 Autotransporter beta-domain M482_3934 PF00583 Acetyltransferase (GNAT) family M482_3935 PF01218 Coproporphyrinogen III oxidase M482_3936 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 M482_3937 PF00390 Malic enzyme, N-terminal domain M482_3937 PF01515 Phosphate acetyl/butaryl transferase M482_3937 PF03949 Malic enzyme, NAD binding domain M482_3938 PF00293 NUDIX domain M482_3939 PF03264 NapC/NirT cytochrome c family, N-terminal region M482_394 PF13693 Winged helix-turn-helix DNA-binding M482_3940 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) M482_3941 PF10518 TAT (twin-arginine translocation) pathway signal sequence M482_3941 PF01568 Molydopterin dinucleotide binding domain M482_3941 PF00384 Molybdopterin oxidoreductase M482_3941 PF04879 Molybdopterin oxidoreductase Fe4S4 domain M482_3942 PF03927 NapD protein M482_3943 PF13187 4Fe-4S dicluster domain M482_3943 PF00037 4Fe-4S binding domain M482_3943 PF12800 4Fe-4S binding domain M482_3944 PF00072 Response regulator receiver domain M482_3944 PF00196 Bacterial regulatory proteins, luxR family M482_3946 PF00873 AcrB/AcrD/AcrF family M482_3948 PF04307 LexA-binding, inner membrane-associated putative hydrolase M482_3949 PF13186 Iron-sulfur cluster-binding domain M482_3949 PF04055 Radical SAM superfamily M482_3950 PF00884 Sulfatase M482_3951 PF00005 ABC transporter M482_3951 PF08402 TOBE domain M482_3952 PF00528 Binding-protein-dependent transport system inner membrane component M482_3955 PF03960 ArsC family M482_3956 PF07687 Peptidase dimerisation domain M482_3956 PF01546 Peptidase family M20/M25/M40 M482_3957 PF02557 D-alanyl-D-alanine carboxypeptidase M482_3958 PF13980 Uncharacterised protein family (UPF0370) M482_3959 PF13718 GNAT acetyltransferase 2 M482_3959 PF17176 tRNA-binding domain M482_3959 PF08351 Domain of unknown function (DUF1726) M482_3959 PF05127 Helicase M482_3960 PF04284 Protein of unknown function (DUF441) M482_3961 PF04228 Putative neutral zinc metallopeptidase M482_3962 PF01259 SAICAR synthetase M482_3963 PF01797 Transposase IS200 like M482_3964 PF06804 NlpB/DapX lipoprotein M482_3965 PF00701 Dihydrodipicolinate synthetase family M482_3966 PF01842 ACT domain M482_3967 PF00578 AhpC/TSA family M482_3970 PF01594 AI-2E family transporter M482_3971 PF01435 Peptidase family M48 M482_3971 PF07720 Tetratricopeptide repeat M482_3972 PF03960 ArsC family M482_3973 PF00308 Bacterial dnaA protein M482_3974 PF01797 Transposase IS200 like M482_3976 PF00586 AIR synthase related protein, N-terminal domain M482_3976 PF02769 AIR synthase related protein, C-terminal domain M482_3977 PF00551 Formyl transferase M482_3978 PF13302 Acetyltransferase (GNAT) domain M482_398 PF05638 Type VI secretion system effector, Hcp M482_3981 PF00005 ABC transporter M482_3982 PF00528 Binding-protein-dependent transport system inner membrane component M482_3983 PF00528 Binding-protein-dependent transport system inner membrane component M482_3984 PF17941 Polyphosphate kinase C-terminal domain 1 M482_3984 PF02503 Polyphosphate kinase middle domain M482_3984 PF13089 Polyphosphate kinase N-terminal domain M482_3984 PF13090 Polyphosphate kinase C-terminal domain 2 M482_3985 PF02541 Ppx/GppA phosphatase family M482_3986 PF01769 Divalent cation transporter M482_3986 PF03448 MgtE intracellular N domain M482_3986 PF00571 CBS domain M482_3987 PF00012 Hsp70 protein M482_3988 PF00528 Binding-protein-dependent transport system inner membrane component M482_3989 PF00528 Binding-protein-dependent transport system inner membrane component M482_3991 PF00202 Aminotransferase class-III M482_3992 PF00155 Aminotransferase class I and II M482_3992 PF00392 Bacterial regulatory proteins, gntR family M482_3993 PF00005 ABC transporter M482_3993 PF08402 TOBE domain M482_3994 PF13533 Biotin-lipoyl like M482_3995 PF00873 AcrB/AcrD/AcrF family M482_3996 PF00873 AcrB/AcrD/AcrF family M482_3997 PF00873 AcrB/AcrD/AcrF family M482_3998 PF07690 Major Facilitator Superfamily M482_3999 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M482_3999 PF00672 HAMP domain M482_3999 PF00512 His Kinase A (phospho-acceptor) domain M482_4 PF02224 Cytidylate kinase M482_40 PF11066 Protein of unknown function (DUF2867) M482_40 PF13460 NAD(P)H-binding M482_4000 PF00486 Transcriptional regulatory protein, C terminal M482_4000 PF00072 Response regulator receiver domain M482_4001 PF07411 Domain of unknown function (DUF1508) M482_4003 PF00781 Diacylglycerol kinase catalytic domain M482_4006 PF08543 Phosphomethylpyrimidine kinase M482_4009 PF00872 Transposase, Mutator family M482_401 PF16168 Adhesin of bacterial autotransporter system, probable stalk M482_401 PF03212 Pertactin M482_401 PF13018 Extended Signal Peptide of Type V secretion system M482_401 PF03797 Autotransporter beta-domain M482_4015 PF05638 Type VI secretion system effector, Hcp M482_4016 PF01797 Transposase IS200 like M482_4017 PF00117 Glutamine amidotransferase class-I M482_4017 PF00958 GMP synthase C terminal domain M482_4017 PF02540 NAD synthase M482_4018 PF00571 CBS domain M482_4018 PF00478 IMP dehydrogenase / GMP reductase domain M482_4019 PF02601 Exonuclease VII, large subunit M482_4019 PF13742 OB-fold nucleic acid binding domain M482_4020 PF07191 zinc-ribbons M482_4022 PF01926 50S ribosome-binding GTPase M482_4022 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal M482_4023 PF13360 PQQ-like domain M482_4024 PF09976 Tetratricopeptide repeat-like domain M482_4025 PF13393 Histidyl-tRNA synthetase M482_4025 PF03129 Anticodon binding domain M482_4026 PF04551 GcpE protein M482_4027 PF13464 Domain of unknown function (DUF4115) M482_4029 PF04055 Radical SAM superfamily M482_403 PF08007 Cupin superfamily protein M482_4030 PF00334 Nucleoside diphosphate kinase M482_4032 PF03212 Pertactin M482_4032 PF16168 Adhesin of bacterial autotransporter system, probable stalk M482_4032 PF03797 Autotransporter beta-domain M482_4033 PF03212 Pertactin M482_4033 PF03797 Autotransporter beta-domain M482_4033 PF16168 Adhesin of bacterial autotransporter system, probable stalk M482_4035 PF07179 SseB protein N-terminal domain M482_4035 PF14581 SseB protein C-terminal domain M482_4036 PF00883 Cytosol aminopeptidase family, catalytic domain M482_4036 PF12404 Peptidase M482_4037 PF04384 Iron-sulphur cluster assembly M482_4038 PF00111 2Fe-2S iron-sulfur cluster binding domain M482_4039 PF00012 Hsp70 protein M482_404 PF00872 Transposase, Mutator family M482_4040 PF00226 DnaJ domain M482_4040 PF07743 HSCB C-terminal oligomerisation domain M482_4041 PF01521 Iron-sulphur cluster biosynthesis M482_4042 PF01592 NifU-like N terminal domain M482_4043 PF00266 Aminotransferase class-V M482_4044 PF02082 Transcriptional regulator M482_4045 PF00588 SpoU rRNA Methylase family M482_4046 PF00459 Inositol monophosphatase family M482_4047 PF03824 High-affinity nickel-transport protein M482_4048 PF06226 Protein of unknown function (DUF1007) M482_4049 PF12832 MFS_1 like family M482_405 PF00872 Transposase, Mutator family M482_4050 PF00874 PRD domain M482_4051 PF13505 Outer membrane protein beta-barrel domain M482_4052 PF00464 Serine hydroxymethyltransferase M482_4053 PF00970 Oxidoreductase FAD-binding domain M482_4053 PF00042 Globin M482_4053 PF00175 Oxidoreductase NAD-binding domain M482_4054 PF02796 Helix-turn-helix domain of resolvase M482_4054 PF00665 Integrase core domain M482_4055 PF01695 IstB-like ATP binding protein M482_4056 PF14502 Helix-turn-helix domain M482_4056 PF14503 YhfZ C-terminal domain M482_4057 PF00543 Nitrogen regulatory protein P-II M482_4058 PF00795 Carbon-nitrogen hydrolase M482_4058 PF02540 NAD synthase M482_4059 PF00072 Response regulator receiver domain M482_4059 PF00158 Sigma-54 interaction domain M482_4060 PF13942 YfhG lipoprotein M482_4061 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M482_4061 PF00512 His Kinase A (phospho-acceptor) domain M482_4066 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal M482_4066 PF02769 AIR synthase related protein, C-terminal domain M482_4066 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain M482_4067 PF00497 Bacterial extracellular solute-binding proteins, family 3 M482_4067 PF01464 Transglycosylase SLT domain M482_4068 PF14437 MafB19-like deaminase M482_4070 PF01380 SIS domain M482_4071 PF01418 Helix-turn-helix domain, rpiR family M482_4071 PF01380 SIS domain M482_4072 PF12838 4Fe-4S dicluster domain M482_4073 PF01797 Transposase IS200 like M482_4074 PF03886 ABC-type transport auxiliary lipoprotein component M482_4075 PF02470 MlaD protein M482_4076 PF04403 Paraquat-inducible protein A M482_4077 PF00005 ABC transporter M482_4077 PF16326 ABC transporter C-terminal domain M482_4077 PF12848 ABC transporter M482_4078 PF02926 THUMP domain M482_4078 PF01170 Putative RNA methylase family UPF0020 M482_4078 PF10672 S-adenosylmethionine-dependent methyltransferase M482_4079 PF00111 2Fe-2S iron-sulfur cluster binding domain M482_4079 PF03476 MOSC N-terminal beta barrel domain M482_4079 PF03473 MOSC domain M482_4080 PF07126 Cell-division protein ZapC M482_4081 PF01180 Dihydroorotate dehydrogenase M482_4082 PF11940 Domain of unknown function (DUF3458) Ig-like fold M482_4082 PF17432 Domain of unknown function (DUF3458_C) ARM repeats M482_4082 PF01433 Peptidase family M1 domain M482_4083 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family M482_4083 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain M482_4084 PF01336 OB-fold nucleic acid binding domain M482_4084 PF00152 tRNA synthetases class II (D, K and N) M482_4085 PF00267 Gram-negative porin M482_4086 PF00155 Aminotransferase class I and II M482_4087 PF00753 Metallo-beta-lactamase superfamily M482_4088 PF05951 Bacterial protein of unknown function (DUF882) M482_4089 PF01471 Putative peptidoglycan binding domain M482_4089 PF03734 L,D-transpeptidase catalytic domain M482_4091 PF16330 MukB hinge domain M482_4091 PF04310 MukB N-terminal M482_4092 PF04288 MukE-like family M482_4093 PF17192 MukF middle domain M482_4093 PF17193 MukF C-terminal domain M482_4093 PF03882 MukF winged-helix domain M482_4095 PF01636 Phosphotransferase enzyme family M482_4096 PF02348 Cytidylyltransferase M482_4097 PF03966 Trm112p-like protein M482_4098 PF00313 'Cold-shock' DNA-binding domain M482_4099 PF07063 Domain of unknown function (DUF1338) M482_41 PF01370 NAD dependent epimerase/dehydratase family M482_410 PF00248 Aldo/keto reductase family M482_4100 PF02606 Tetraacyldisaccharide-1-P 4'-kinase M482_4101 PF00664 ABC transporter transmembrane region M482_4101 PF00005 ABC transporter M482_4102 PF13953 PapC C-terminal domain M482_4102 PF00577 Outer membrane usher protein M482_4102 PF13954 PapC N-terminal domain M482_4103 PF02753 Pili assembly chaperone PapD, C-terminal domain M482_4103 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain M482_4104 PF12833 Helix-turn-helix domain M482_4104 PF06445 GyrI-like small molecule binding domain M482_411 PF00248 Aldo/keto reductase family M482_4113 PF00872 Transposase, Mutator family M482_4114 PF07916 TraG-like protein, N-terminal region M482_4115 PF06122 Conjugative relaxosome accessory transposon protein M482_4116 PF13728 F plasmid transfer operon protein M482_4117 PF09679 Type-F conjugative transfer system pilin chaperone (TraQ) M482_4118 PF13728 F plasmid transfer operon protein M482_412 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M482_412 PF03466 LysR substrate binding domain M482_4120 PF06986 Type-1V conjugative transfer system mating pair stabilisation M482_4121 PF09673 Type-F conjugative transfer system pilin assembly protein M482_4122 PF06834 TraU protein M482_4123 PF12477 Sex factor F TraW protein N terminal M482_4124 PF09677 Type-F conjugative transfer system protein (TrbI_Ftype) M482_4125 PF11130 F pilus assembly Type-IV secretion system for plasmid transfer M482_413 PF01695 IstB-like ATP binding protein M482_4130 PF09676 Type IV conjugative transfer system lipoprotein (TraV) M482_4131 PF03743 Bacterial conjugation TrbI-like protein M482_4132 PF06586 TraK protein M482_4133 PF05309 TraE protein M482_4134 PF07178 TraL protein M482_4135 PF05513 TraA M482_4136 PF00872 Transposase, Mutator family M482_4137 PF10412 Type IV secretion-system coupling protein DNA-binding domain M482_4137 PF12615 F sex factor protein N terminal M482_4138 PF18340 DNA relaxase TraI 2B/2B-like domain M482_4138 PF07057 DNA helicase TraI M482_4138 PF18272 single-stranded DNA binding TraI N-terminal subdomain M482_4138 PF08751 TrwC relaxase M482_4139 PF05857 TraX protein M482_4141 PF13462 Thioredoxin M482_4141 PF06965 Na+/H+ antiporter 1 M482_4143 PF02387 IncFII RepA protein family M482_4145 PF01548 Transposase M482_4145 PF02371 Transposase IS116/IS110/IS902 family M482_4147 PF13091 PLD-like domain M482_4149 PF04754 Putative transposase, YhgA-like M482_4150 PF00239 Resolvase, N terminal domain M482_4150 PF02796 Helix-turn-helix domain of resolvase M482_4153 PF13614 AAA domain M482_4153 PF18607 ParA helix turn helix domain M482_4154 PF02195 ParB-like nuclease domain M482_4154 PF08775 ParB family M482_4157 PF01555 DNA methylase M482_4159 PF07128 Protein of unknown function (DUF1380) M482_416 PF00782 Dual specificity phosphatase, catalytic domain M482_4162 PF06006 Bacterial protein of unknown function (DUF905) M482_4163 PF02195 ParB-like nuclease domain M482_4164 PF00665 Integrase core domain M482_4164 PF02796 Helix-turn-helix domain of resolvase M482_4165 PF01695 IstB-like ATP binding protein M482_4166 PF02413 Caudovirales tail fibre assembly protein, lambda gpK M482_4167 PF07484 Phage Tail Collar Domain M482_4167 PF03335 Phage tail fibre repeat M482_4167 PF03335 Phage tail fibre repeat M482_4167 PF08400 Prophage tail fibre N-terminal M482_4167 PF07484 Phage Tail Collar Domain M482_4167 PF08400 Prophage tail fibre N-terminal M482_417 PF12147 Putative methyltransferase M482_417 PF12146 Serine aminopeptidase, S33 M482_418 PF01553 Acyltransferase M482_4191 PF00664 ABC transporter transmembrane region M482_4191 PF03412 Peptidase C39 family M482_4191 PF00005 ABC transporter M482_4192 PF02195 ParB-like nuclease domain M482_4192 PF17762 HTH domain found in ParB protein M482_4193 PF17762 HTH domain found in ParB protein M482_4193 PF02195 ParB-like nuclease domain M482_4194 PF00270 DEAD/DEAH box helicase M482_4194 PF17191 RecG wedge domain M482_4194 PF00271 Helicase conserved C-terminal domain M482_42 PF12883 Protein of unknown function (DUF3828) M482_420 PF01066 CDP-alcohol phosphatidyltransferase M482_4205 PF01797 Transposase IS200 like M482_4207 PF00268 Ribonucleotide reductase, small chain M482_4208 PF03477 ATP cone domain M482_4208 PF02867 Ribonucleotide reductase, barrel domain M482_4208 PF00317 Ribonucleotide reductase, all-alpha domain M482_4216 PF01051 Initiator Replication protein M482_4222 PF01797 Transposase IS200 like M482_4225 PF00154 recA bacterial DNA recombination protein M482_4227 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain M482_4227 PF01367 5'-3' exonuclease, C-terminal SAM fold M482_4233 PF02811 PHP domain M482_4233 PF14579 Helix-hairpin-helix motif M482_4233 PF07733 Bacterial DNA polymerase III alpha NTPase domain M482_4233 PF17657 Bacterial DNA polymerase III alpha subunit finger domain M482_4235 PF06213 Cobalamin biosynthesis protein CobT M482_4235 PF11775 Cobalamin biosynthesis protein CobT VWA domain M482_4239 PF16697 Inner membrane component of T3SS, cytoplasmic domain M482_4239 PF16693 Inner membrane component of T3SS, periplasmic domain M482_4240 PF08988 Type III secretion system, cytoplasmic E component of needle M482_4241 PF09392 Type III secretion needle MxiH, YscF, SsaG, EprI, PscF, EscF M482_4242 PF09477 Bacterial type II secretion system chaperone protein (type_III_yscG) M482_4243 PF09025 YopR, type III needle-polymerisation regulator M482_4244 PF17001 Type III secretion basal body protein I, YscI, HrpB, PscI M482_4245 PF01514 Secretory protein of YscJ/FliF family M482_4246 PF06578 YOP proteins translocation protein K (YscK) M482_4247 PF02108 Flagellar assembly protein FliH M482_4248 PF09013 YopH, N-terminal M482_4249 PF01527 Transposase M482_4251 PF02796 Helix-turn-helix domain of resolvase M482_4251 PF00665 Integrase core domain M482_4252 PF01695 IstB-like ATP binding protein M482_4253 PF13683 Integrase core domain M482_4253 PF13276 HTH-like domain M482_4254 PF00102 Protein-tyrosine phosphatase M482_4254 PF09013 YopH, N-terminal M482_4255 PF13683 Integrase core domain M482_4255 PF13276 HTH-like domain M482_4257 PF09632 Rac1-binding domain M482_4257 PF00069 Protein kinase domain M482_426 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain M482_426 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain M482_4263 PF02387 IncFII RepA protein family M482_4264 PF10723 Replication regulatory protein RepB M482_4268 PF18272 single-stranded DNA binding TraI N-terminal subdomain M482_4268 PF07057 DNA helicase TraI M482_4268 PF18340 DNA relaxase TraI 2B/2B-like domain M482_4268 PF08751 TrwC relaxase M482_4270 PF05662 Coiled stalk of trimeric autotransporter adhesin M482_4270 PF03895 YadA-like membrane anchor domain M482_4270 PF05658 Head domain of trimeric autotransporter adhesin M482_4272 PF05658 Head domain of trimeric autotransporter adhesin M482_4272 PF03895 YadA-like membrane anchor domain M482_4272 PF05662 Coiled stalk of trimeric autotransporter adhesin M482_4273 PF01526 Tn3 transposase DDE domain M482_4273 PF13700 Domain of unknown function (DUF4158) M482_4275 PF00239 Resolvase, N terminal domain M482_4275 PF02796 Helix-turn-helix domain of resolvase M482_4278 PF01527 Transposase M482_4279 PF13276 HTH-like domain M482_4279 PF13683 Integrase core domain M482_428 PF01797 Transposase IS200 like M482_4281 PF01695 IstB-like ATP binding protein M482_4282 PF00665 Integrase core domain M482_4284 PF13276 HTH-like domain M482_4284 PF13683 Integrase core domain M482_4285 PF05932 Tir chaperone protein (CesT) family M482_4286 PF03545 Yersinia virulence determinant (YopE) M482_4286 PF09020 YopE, N terminal M482_4288 PF03693 Bacterial antitoxin of ParD toxin-antitoxin type II system and RHH M482_4290 PF18090 Centromere-binding protein HTH domain M482_4290 PF02195 ParB-like nuclease domain M482_4291 PF13614 AAA domain M482_4293 PF00665 Integrase core domain M482_4293 PF13333 Integrase core domain M482_4293 PF13276 HTH-like domain M482_4295 PF05818 Enterobacterial TraT complement resistance protein M482_4297 PF03543 Yersinia/Haemophilus virulence surface antigen M482_4298 PF05932 Tir chaperone protein (CesT) family M482_43 PF01817 Chorismate mutase type II M482_430 PF09190 DALR domain M482_430 PF01406 tRNA synthetases class I (C) catalytic domain M482_4302 PF12468 Type III secretion system leucine rich repeat protein M482_4304 PF00872 Transposase, Mutator family M482_4305 PF00872 Transposase, Mutator family M482_4306 PF05844 YopD protein M482_4307 PF04888 Secretion system effector C (SseC) like family M482_4308 PF07720 Tetratricopeptide repeat M482_4309 PF04792 V antigen (LcrV) protein M482_431 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD M482_4310 PF07216 LcrG protein M482_4311 PF09621 Type III secretion system regulator (LcrR) M482_4312 PF00771 FHIPEP family M482_4314 PF09474 Type III secretion system YscX (type_III_YscX) M482_4316 PF09059 TyeA M482_4317 PF07201 HrpJ-like domain M482_4318 PF18269 T3SS EscN ATPase C-terminal domain M482_4318 PF02874 ATP synthase alpha/beta family, beta-barrel domain M482_4318 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain M482_4319 PF07321 Type III secretion protein YscO M482_432 PF00149 Calcineurin-like phosphoesterase M482_4320 PF02120 Flagellar hook-length control protein FliK M482_4321 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term M482_4322 PF00813 FliP family M482_4323 PF01313 Bacterial export proteins, family 3 M482_4324 PF01311 Bacterial export proteins, family 1 M482_4325 PF01312 FlhB HrpN YscU SpaS Family M482_4327 PF12833 Helix-turn-helix domain M482_4327 PF02311 AraC-like ligand binding domain M482_4328 PF05932 Tir chaperone protein (CesT) family M482_433 PF00731 AIR carboxylase M482_434 PF02222 ATP-grasp domain M482_434 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain M482_436 PF00005 ABC transporter M482_437 PF13472 GDSL-like Lipase/Acylhydrolase family M482_438 PF00106 short chain dehydrogenase M482_439 PF00085 Thioredoxin M482_44 PF00005 ABC transporter M482_440 PF01145 SPFH domain / Band 7 family M482_440 PF16200 C-terminal region of band_7 M482_441 PF01957 NfeD-like C-terminal, partner-binding M482_442 PF13411 MerR HTH family regulatory protein M482_443 PF00403 Heavy-metal-associated domain M482_444 PF01963 TraB family M482_445 PF04073 Aminoacyl-tRNA editing domain M482_448 PF00149 Calcineurin-like phosphoesterase M482_448 PF02872 5'-nucleotidase, C-terminal domain M482_449 PF02872 5'-nucleotidase, C-terminal domain M482_449 PF00149 Calcineurin-like phosphoesterase M482_45 PF00497 Bacterial extracellular solute-binding proteins, family 3 M482_450 PF02872 5'-nucleotidase, C-terminal domain M482_450 PF00149 Calcineurin-like phosphoesterase M482_451 PF07690 Major Facilitator Superfamily M482_452 PF07690 Major Facilitator Superfamily M482_453 PF02254 TrkA-N domain M482_453 PF00999 Sodium/hydrogen exchanger family M482_454 PF00294 pfkB family carbohydrate kinase M482_455 PF02706 Chain length determinant protein M482_456 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III M482_456 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I M482_456 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II M482_456 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain M482_457 PF00535 Glycosyl transferase family 2 M482_458 PF00483 Nucleotidyl transferase M482_458 PF01050 Mannose-6-phosphate isomerase M482_459 PF01370 NAD dependent epimerase/dehydratase family M482_46 PF00528 Binding-protein-dependent transport system inner membrane component M482_460 PF16363 GDP-mannose 4,6 dehydratase M482_461 PF16363 GDP-mannose 4,6 dehydratase M482_462 PF13439 Glycosyltransferase Family 4 M482_462 PF00534 Glycosyl transferases group 1 M482_469 PF01370 NAD dependent epimerase/dehydratase family M482_47 PF00528 Binding-protein-dependent transport system inner membrane component M482_470 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family M482_471 PF16363 GDP-mannose 4,6 dehydratase M482_472 PF00483 Nucleotidyl transferase M482_473 PF00970 Oxidoreductase FAD-binding domain M482_473 PF00111 2Fe-2S iron-sulfur cluster binding domain M482_473 PF00175 Oxidoreductase NAD-binding domain M482_474 PF00762 Ferrochelatase M482_475 PF05191 Adenylate kinase, active site lid M482_476 PF00183 Hsp90 protein M482_476 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M482_477 PF13662 Toprim domain M482_477 PF02132 RecR protein M482_478 PF02575 YbaB/EbfC DNA-binding family M482_479 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding M482_479 PF12169 DNA polymerase III subunits gamma and tau domain III M482_479 PF12170 DNA polymerase III tau subunit V interacting with alpha M482_48 PF00892 EamA-like transporter family M482_480 PF00156 Phosphoribosyl transferase domain M482_481 PF04304 Protein of unknown function (DUF454) M482_483 PF00924 Mechanosensitive ion channel M482_483 PF12795 Mechanosensitive ion channel porin domain M482_483 PF12794 Mechanosensitive ion channel inner membrane domain 1 M482_484 PF02635 DsrE/DsrF-like family M482_485 PF08361 MAATS-type transcriptional repressor, C-terminal region M482_485 PF00440 Bacterial regulatory proteins, tetR family M482_486 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion M482_486 PF00529 HlyD membrane-fusion protein of T1SS M482_487 PF00873 AcrB/AcrD/AcrF family M482_488 PF01197 Ribosomal protein L31 M482_489 PF00444 Ribosomal protein L36 M482_49 PF10100 Staphylopine dehydrogenase M482_491 PF10757 Biofilm formation regulator YbaJ M482_492 PF05321 Haemolysin expression modulating protein M482_493 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain M482_494 PF09619 Type III secretion system lipoprotein chaperone (YscW) M482_496 PF00909 Ammonium Transporter Family M482_497 PF00543 Nitrogen regulatory protein P-II M482_498 PF00005 ABC transporter M482_498 PF00664 ABC transporter transmembrane region M482_499 PF00664 ABC transporter transmembrane region M482_499 PF00005 ABC transporter M482_5 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) M482_50 PF03059 Nicotianamine synthase protein M482_500 PF13404 AsnC-type helix-turn-helix domain M482_500 PF01037 Lrp/AsnC ligand binding domain M482_501 PF00291 Pyridoxal-phosphate dependent enzyme M482_503 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle M482_503 PF12793 Sugar transport-related sRNA regulator N-term M482_504 PF06508 Queuosine biosynthesis protein QueC M482_507 PF13145 PPIC-type PPIASE domain M482_51 PF00005 ABC transporter M482_510 PF00216 Bacterial DNA-binding protein M482_511 PF05362 Lon protease (S16) C-terminal proteolytic domain M482_511 PF02190 ATP-dependent protease La (LON) substrate-binding domain M482_511 PF00004 ATPase family associated with various cellular activities (AAA) M482_512 PF06689 ClpX C4-type zinc finger M482_512 PF07724 AAA domain (Cdc48 subfamily) M482_512 PF10431 C-terminal, D2-small domain, of ClpB protein M482_513 PF00574 Clp protease M482_514 PF05697 Bacterial trigger factor protein (TF) M482_514 PF05698 Bacterial trigger factor protein (TF) C-terminus M482_514 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase M482_516 PF01722 BolA-like protein M482_517 PF08139 Prokaryotic membrane lipoprotein lipid attachment site M482_517 PF03923 Uncharacterized lipoprotein M482_518 PF07690 Major Facilitator Superfamily M482_519 PF03502 Nucleoside-specific channel-forming protein, Tsx M482_52 PF01032 FecCD transport family M482_520 PF06481 COX Aromatic Rich Motif M482_520 PF00116 Cytochrome C oxidase subunit II, periplasmic domain M482_521 PF00115 Cytochrome C and Quinol oxidase polypeptide I M482_522 PF00510 Cytochrome c oxidase subunit III M482_523 PF03626 Prokaryotic Cytochrome C oxidase subunit IV M482_524 PF01040 UbiA prenyltransferase family M482_525 PF07690 Major Facilitator Superfamily M482_526 PF04461 Protein of unknown function (DUF520) M482_527 PF08546 Ketopantoate reductase PanE/ApbA C terminal M482_527 PF02558 Ketopantoate reductase PanE/ApbA M482_528 PF01965 DJ-1/PfpI family M482_529 PF02568 Thiamine biosynthesis protein (ThiI) M482_529 PF02926 THUMP domain M482_530 PF02609 Exonuclease VII small subunit M482_531 PF00348 Polyprenyl synthetase M482_532 PF13292 1-deoxy-D-xylulose-5-phosphate synthase M482_532 PF02780 Transketolase, C-terminal domain M482_532 PF02779 Transketolase, pyrimidine binding domain M482_534 PF04608 Phosphatidylglycerophosphatase A M482_535 PF02769 AIR synthase related protein, C-terminal domain M482_535 PF00586 AIR synthase related protein, N-terminal domain M482_536 PF01029 NusB family M482_537 PF00885 6,7-dimethyl-8-ribityllumazine synthase M482_538 PF01872 RibD C-terminal domain M482_538 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region M482_539 PF03477 ATP cone domain M482_543 PF02355 Protein export membrane protein M482_543 PF07549 SecD/SecF GG Motif M482_544 PF02355 Protein export membrane protein M482_544 PF13721 SecD export protein N-terminal TM region M482_544 PF07549 SecD/SecF GG Motif M482_545 PF02699 Preprotein translocase subunit M482_546 PF01702 Queuine tRNA-ribosyltransferase M482_547 PF02547 Queuosine biosynthesis protein M482_548 PF04336 Acyl carrier protein phosphodiesterase M482_549 PF10417 C-terminal domain of 1-Cys peroxiredoxin M482_549 PF00578 AhpC/TSA family M482_553 PF02903 Alpha amylase, N-terminal ig-like domain M482_553 PF00128 Alpha amylase, catalytic domain M482_554 PF00324 Amino acid permease M482_555 PF05525 Branched-chain amino acid transport protein M482_556 PF12849 PBP superfamily domain M482_557 PF00512 His Kinase A (phospho-acceptor) domain M482_557 PF11808 Phosphate regulon sensor protein PhoR M482_557 PF00989 PAS fold M482_557 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M482_558 PF00072 Response regulator receiver domain M482_558 PF00486 Transcriptional regulatory protein, C terminal M482_559 PF00149 Calcineurin-like phosphoesterase M482_559 PF12320 Type 5 capsule protein repressor C-terminal domain M482_560 PF13476 AAA domain M482_561 PF00480 ROK family M482_562 PF04381 Putative exonuclease, RdgC M482_563 PF06865 Pyrimidine/purine nucleoside phosphorylase M482_564 PF01202 Shikimate kinase M482_566 PF08241 Methyltransferase domain M482_568 PF07317 Flagellar regulator YcgR M482_568 PF07238 PilZ domain M482_569 PF00171 Aldehyde dehydrogenase family M482_57 PF05958 tRNA (Uracil-5-)-methyltransferase M482_570 PF01472 PUA domain M482_570 PF00696 Amino acid kinase family M482_571 PF07417 Sigma factor-binding transcriptional regulator Crl M482_573 PF00156 Phosphoribosyl transferase domain M482_577 PF07687 Peptidase dimerisation domain M482_577 PF01546 Peptidase family M20/M25/M40 M482_578 PF00817 impB/mucB/samB family M482_578 PF11799 impB/mucB/samB family C-terminal domain M482_578 PF11798 IMS family HHH motif M482_579 PF03009 Glycerophosphoryl diester phosphodiesterase family M482_58 PF10767 Protein of unknown function (DUF2593) M482_581 PF02424 ApbE family M482_582 PF00970 Oxidoreductase FAD-binding domain M482_582 PF00111 2Fe-2S iron-sulfur cluster binding domain M482_582 PF00175 Oxidoreductase NAD-binding domain M482_583 PF02508 Rnf-Nqr subunit, membrane protein M482_584 PF02508 Rnf-Nqr subunit, membrane protein M482_585 PF04205 FMN-binding domain M482_586 PF03116 NQR2, RnfD, RnfE family M482_587 PF11973 NQRA C-terminal domain M482_587 PF05896 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) M482_588 PF13230 Glutamine amidotransferases class-II M482_589 PF03734 L,D-transpeptidase catalytic domain M482_59 PF00528 Binding-protein-dependent transport system inner membrane component M482_590 PF13580 SIS domain M482_591 PF09317 Domain of unknown function (DUF1974) M482_591 PF00441 Acyl-CoA dehydrogenase, C-terminal domain M482_591 PF02771 Acyl-CoA dehydrogenase, N-terminal domain M482_594 PF18071 HMW1C N-terminal M482_594 PF18254 HMW1 domain 2 M482_595 PF05860 haemagglutination activity domain M482_596 PF08479 POTRA domain, ShlB-type M482_596 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB M482_597 PF01636 Phosphotransferase enzyme family M482_598 PF01008 Initiation factor 2 subunit family M482_599 PF03079 ARD/ARD' family M482_6 PF00266 Aminotransferase class-V M482_60 PF00528 Binding-protein-dependent transport system inner membrane component M482_601 PF00596 Class II Aldolase and Adducin N-terminal domain M482_602 PF00155 Aminotransferase class I and II M482_603 PF00795 Carbon-nitrogen hydrolase M482_604 PF07687 Peptidase dimerisation domain M482_604 PF01546 Peptidase family M20/M25/M40 M482_605 PF00266 Aminotransferase class-V M482_606 PF00665 Integrase core domain M482_606 PF02796 Helix-turn-helix domain of resolvase M482_607 PF01695 IstB-like ATP binding protein M482_608 PF00266 Aminotransferase class-V M482_609 PF00005 ABC transporter M482_61 PF08402 TOBE domain M482_61 PF00005 ABC transporter M482_611 PF00528 Binding-protein-dependent transport system inner membrane component M482_612 PF00497 Bacterial extracellular solute-binding proteins, family 3 M482_615 PF01425 Amidase M482_617 PF07690 Major Facilitator Superfamily M482_618 PF03591 AzlC protein M482_619 PF05437 Branched-chain amino acid transport protein (AzlD) M482_62 PF13416 Bacterial extracellular solute-binding protein M482_620 PF01047 MarR family M482_621 PF00529 HlyD membrane-fusion protein of T1SS M482_621 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion M482_622 PF07690 Major Facilitator Superfamily M482_623 PF08032 RNA 2'-O ribose methyltransferase substrate binding M482_623 PF00588 SpoU rRNA Methylase family M482_624 PF00085 Thioredoxin M482_626 PF13607 Succinyl-CoA ligase like flavodoxin domain M482_626 PF00583 Acetyltransferase (GNAT) family M482_626 PF13380 CoA binding domain M482_627 PF13091 PLD-like domain M482_628 PF10043 Predicted periplasmic lipoprotein (DUF2279) M482_63 PF10722 Putative bacterial sensory transduction regulator M482_634 PF01177 Asp/Glu/Hydantoin racemase M482_635 PF07715 TonB-dependent Receptor Plug Domain M482_635 PF00593 TonB dependent receptor M482_636 PF05958 tRNA (Uracil-5-)-methyltransferase M482_637 PF07226 Protein of unknown function (DUF1422) M482_638 PF00440 Bacterial regulatory proteins, tetR family M482_639 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M482_639 PF03466 LysR substrate binding domain M482_64 PF07214 Protein of unknown function (DUF1418) M482_640 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain M482_640 PF07992 Pyridine nucleotide-disulphide oxidoreductase M482_641 PF00462 Glutaredoxin M482_641 PF08534 Redoxin M482_642 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain M482_642 PF07992 Pyridine nucleotide-disulphide oxidoreductase M482_643 PF03544 Gram-negative bacterial TonB protein C-terminal M482_644 PF00529 HlyD membrane-fusion protein of T1SS M482_645 PF00005 ABC transporter M482_645 PF00664 ABC transporter transmembrane region M482_647 PF00593 TonB dependent receptor M482_647 PF07715 TonB-dependent Receptor Plug Domain M482_649 PF14698 Argininosuccinate lyase C-terminal M482_649 PF00206 Lyase M482_65 PF00462 Glutaredoxin M482_650 PF00696 Amino acid kinase family M482_651 PF02774 Semialdehyde dehydrogenase, dimerisation domain M482_651 PF01118 Semialdehyde dehydrogenase, NAD binding domain M482_652 PF07687 Peptidase dimerisation domain M482_652 PF01546 Peptidase family M20/M25/M40 M482_653 PF00311 Phosphoenolpyruvate carboxylase M482_655 PF00665 Integrase core domain M482_655 PF13276 HTH-like domain M482_655 PF13333 Integrase core domain M482_656 PF00312 Ribosomal protein S15 M482_657 PF16198 tRNA pseudouridylate synthase B C-terminal domain M482_657 PF09157 Pseudouridine synthase II TruB, C-terminal M482_657 PF01509 TruB family pseudouridylate synthase (N terminal domain) M482_658 PF02033 Ribosome-binding factor A M482_659 PF08364 Bacterial translation initiation factor IF-2 associated region M482_659 PF00009 Elongation factor Tu GTP binding domain M482_659 PF04760 Translation initiation factor IF-2, N-terminal region M482_659 PF11987 Translation-initiation factor 2 M482_659 PF03144 Elongation factor Tu domain 2 M482_66 PF06826 Predicted Permease Membrane Region M482_66 PF02080 TrkA-C domain M482_660 PF08529 NusA N-terminal domain M482_660 PF00575 S1 RNA binding domain M482_660 PF13184 NusA-like KH domain M482_661 PF02576 RimP N-terminal domain M482_661 PF17384 RimP C-terminal SH3 domain M482_664 PF03840 Preprotein translocase SecG subunit M482_665 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III M482_665 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II M482_665 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I M482_665 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain M482_666 PF00809 Pterin binding enzyme M482_667 PF00004 ATPase family associated with various cellular activities (AAA) M482_667 PF17862 AAA+ lid domain M482_667 PF01434 Peptidase family M41 M482_667 PF06480 FtsH Extracellular M482_668 PF01728 FtsJ-like methyltransferase M482_669 PF01985 CRS1 / YhbY (CRM) domain M482_670 PF01272 Transcription elongation factor, GreA/GreB, C-term M482_670 PF03449 Transcription elongation factor, N-terminal M482_671 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family M482_672 PF00072 Response regulator receiver domain M482_672 PF00486 Transcriptional regulatory protein, C terminal M482_673 PF00672 HAMP domain M482_673 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M482_673 PF00512 His Kinase A (phospho-acceptor) domain M482_674 PF01018 GTP1/OBG M482_674 PF01926 50S ribosome-binding GTPase M482_675 PF00892 EamA-like transporter family M482_676 PF01016 Ribosomal L27 protein M482_677 PF00829 Ribosomal prokaryotic L21 protein M482_678 PF00348 Polyprenyl synthetase M482_68 PF01569 PAP2 superfamily M482_680 PF13693 Winged helix-turn-helix DNA-binding M482_681 PF00056 lactate/malate dehydrogenase, NAD binding domain M482_681 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain M482_682 PF01316 Arginine repressor, DNA binding domain M482_682 PF02863 Arginine repressor, C-terminal domain M482_684 PF08245 Mur ligase middle domain M482_684 PF02875 Mur ligase family, glutamate ligase domain M482_684 PF01225 Mur ligase family, catalytic domain M482_685 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain M482_686 PF00719 Inorganic pyrophosphatase M482_687 PF06094 Gamma-glutamyl cyclotransferase, AIG2-like M482_688 PF04357 TamB, inner membrane protein subunit of TAM complex M482_689 PF17243 POTRA domain TamA domain 1 M482_689 PF07244 Surface antigen variable number repeat M482_689 PF01103 Surface antigen M482_69 PF01791 DeoC/LacD family aldolase M482_690 PF01625 Peptide methionine sulfoxide reductase M482_691 PF01595 Cyclin M transmembrane N-terminal domain M482_691 PF03471 Transporter associated domain M482_691 PF00571 CBS domain M482_692 PF06526 Protein of unknown function (DUF1107) M482_693 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) M482_694 PF00459 Inositol monophosphatase family M482_695 PF00149 Calcineurin-like phosphoesterase M482_695 PF02872 5'-nucleotidase, C-terminal domain M482_696 PF04405 Domain of Unknown function (DUF542) M482_696 PF01814 Hemerythrin HHE cation binding domain M482_697 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase M482_697 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase M482_698 PF08525 Opacity-associated protein A N-terminal motif M482_698 PF04225 Opacity-associated protein A LysM-like domain M482_70 PF00455 DeoR C terminal sensor domain M482_70 PF08220 DeoR-like helix-turn-helix domain M482_700 PF01797 Transposase IS200 like M482_701 PF01281 Ribosomal protein L9, N-terminal domain M482_701 PF03948 Ribosomal protein L9, C-terminal domain M482_702 PF01084 Ribosomal protein S18 M482_703 PF01250 Ribosomal protein S6 M482_705 PF00326 Prolyl oligopeptidase family M482_706 PF01695 IstB-like ATP binding protein M482_707 PF02796 Helix-turn-helix domain of resolvase M482_707 PF00665 Integrase core domain M482_708 PF13673 Acetyltransferase (GNAT) domain M482_709 PF00485 Phosphoribulokinase / Uridine kinase family M482_710 PF03099 Biotin/lipoate A/B protein ligase family M482_710 PF08279 HTH domain M482_710 PF02237 Biotin protein ligase C terminal domain M482_711 PF01565 FAD binding domain M482_711 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain M482_717 PF12724 Flavodoxin domain M482_718 PF02386 Cation transport protein M482_719 PF01205 Uncharacterized protein family UPF0029 M482_719 PF09186 Domain of unknown function (DUF1949) M482_72 PF07943 Penicillin-binding protein 5, C-terminal domain M482_72 PF00768 D-alanyl-D-alanine carboxypeptidase M482_720 PF00557 Metallopeptidase family M24 M482_721 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain M482_721 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain M482_721 PF00378 Enoyl-CoA hydratase/isomerase M482_722 PF00108 Thiolase, N-terminal domain M482_722 PF02803 Thiolase, C-terminal domain M482_723 PF00175 Oxidoreductase NAD-binding domain M482_723 PF00970 Oxidoreductase FAD-binding domain M482_724 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase M482_725 PF02357 Transcription termination factor nusG M482_726 PF00490 Delta-aminolevulinic acid dehydratase M482_727 PF01026 TatD related DNase M482_728 PF00902 Sec-independent protein translocase protein (TatC) M482_73 PF00528 Binding-protein-dependent transport system inner membrane component M482_730 PF02416 mttA/Hcf106 family M482_731 PF03109 ABC1 family M482_732 PF02036 SCP-2 sterol transfer family M482_733 PF01209 ubiE/COQ5 methyltransferase family M482_734 PF02646 RmuC family M482_735 PF09335 SNARE associated Golgi protein M482_736 PF02554 Carbon starvation protein CstA M482_736 PF13722 5TM C-terminal transporter carbon starvation CstA M482_738 PF01048 Phosphorylase superfamily M482_739 PF01738 Dienelactone hydrolase family M482_74 PF00005 ABC transporter M482_74 PF09383 NIL domain M482_740 PF01717 Cobalamin-independent synthase, Catalytic domain M482_740 PF08267 Cobalamin-independent synthase, N-terminal domain M482_741 PF00892 EamA-like transporter family M482_742 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M482_742 PF03466 LysR substrate binding domain M482_743 PF03547 Membrane transport protein M482_744 PF03009 Glycerophosphoryl diester phosphodiesterase family M482_745 PF17912 MalK OB fold domain M482_745 PF00005 ABC transporter M482_746 PF00528 Binding-protein-dependent transport system inner membrane component M482_747 PF00528 Binding-protein-dependent transport system inner membrane component M482_748 PF13416 Bacterial extracellular solute-binding protein M482_75 PF03180 NLPA lipoprotein M482_756 PF00005 ABC transporter M482_757 PF00005 ABC transporter M482_757 PF12399 Branched-chain amino acid ATP-binding cassette transporter M482_758 PF02653 Branched-chain amino acid transport system / permease component M482_758 PF11862 Domain of unknown function (DUF3382) M482_759 PF02653 Branched-chain amino acid transport system / permease component M482_760 PF13458 Periplasmic binding protein M482_761 PF12568 Acetyltransferase (GNAT) domain, PanZ M482_762 PF01797 Transposase IS200 like M482_763 PF00140 Sigma-70 factor, region 1.2 M482_763 PF04542 Sigma-70 region 2 M482_763 PF04545 Sigma-70, region 4 M482_764 PF18075 FtsX extracellular domain M482_764 PF02687 FtsX-like permease family M482_765 PF00005 ABC transporter M482_766 PF00448 SRP54-type protein, GTPase domain M482_766 PF02881 SRP54-type protein, helical bundle domain M482_766 PF00448 SRP54-type protein, GTPase domain M482_766 PF02881 SRP54-type protein, helical bundle domain M482_768 PF06611 Protein of unknown function (DUF1145) M482_771 PF07947 YhhN family M482_772 PF00403 Heavy-metal-associated domain M482_773 PF01206 Sulfurtransferase TusA M482_774 PF02592 Putative vitamin uptake transporter M482_775 PF08786 DcrB M482_776 PF13183 4Fe-4S dicluster domain M482_776 PF02754 Cysteine-rich domain M482_777 PF00890 FAD binding domain M482_778 PF01266 FAD dependent oxidoreductase M482_778 PF04324 BFD-like [2Fe-2S] binding domain M482_779 PF03009 Glycerophosphoryl diester phosphodiesterase family M482_78 PF00043 Glutathione S-transferase, C-terminal domain M482_78 PF13417 Glutathione S-transferase, N-terminal domain M482_782 PF12146 Serine aminopeptidase, S33 M482_783 PF01810 LysE type translocator M482_784 PF01810 LysE type translocator M482_785 PF00270 DEAD/DEAH box helicase M482_785 PF00271 Helicase conserved C-terminal domain M482_785 PF00570 HRDC domain M482_785 PF09382 RQC domain M482_785 PF16124 RecQ zinc-binding M482_786 PF02253 Phospholipase A1 M482_787 PF03061 Thioesterase superfamily M482_788 PF00892 EamA-like transporter family M482_789 PF01544 CorA-like Mg2+ transporter protein M482_79 PF00593 TonB dependent receptor M482_79 PF07715 TonB-dependent Receptor Plug Domain M482_790 PF09370 Phosphoenolpyruvate hydrolase-like M482_793 PF00580 UvrD/REP helicase N-terminal domain M482_793 PF13361 UvrD-like helicase C-terminal domain M482_794 PF13419 Haloacid dehalogenase-like hydrolase M482_795 PF00589 Phage integrase family M482_795 PF02899 Phage integrase, N-terminal SAM-like domain M482_796 PF04340 Protein of unknown function, DUF484 M482_797 PF01678 Diaminopimelate epimerase M482_798 PF13627 Prokaryotic lipoprotein-attachment site M482_799 PF01491 Frataxin-like domain M482_8 PF05658 Head domain of trimeric autotransporter adhesin M482_8 PF03895 YadA-like membrane anchor domain M482_8 PF13018 Extended Signal Peptide of Type V secretion system M482_8 PF05662 Coiled stalk of trimeric autotransporter adhesin M482_8 PF03895 YadA-like membrane anchor domain M482_8 PF05662 Coiled stalk of trimeric autotransporter adhesin M482_8 PF05658 Head domain of trimeric autotransporter adhesin M482_8 PF13018 Extended Signal Peptide of Type V secretion system M482_80 PF00005 ABC transporter M482_800 PF01295 Adenylate cyclase, class-I M482_800 PF12633 Adenylate cyclase NT domain M482_801 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain M482_801 PF03900 Porphobilinogen deaminase, C-terminal domain M482_802 PF02602 Uroporphyrinogen-III synthase HemD M482_803 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase M482_804 PF07719 Tetratricopeptide repeat M482_804 PF07219 HemY protein N-terminus M482_81 PF01032 FecCD transport family M482_811 PF00324 Amino acid permease M482_812 PF03808 Glycosyl transferase WecB/TagA/CpsF family M482_813 PF06899 WzyE protein, O-antigen assembly polymerase M482_814 PF07429 4-alpha-L-fucosyltransferase glycosyl transferase group 56 M482_815 PF01943 Polysaccharide biosynthesis protein M482_816 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family M482_818 PF00483 Nucleotidyl transferase M482_819 PF16363 GDP-mannose 4,6 dehydratase M482_820 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain M482_820 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain M482_820 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain M482_821 PF02350 UDP-N-acetylglucosamine 2-epimerase M482_822 PF02706 Chain length determinant protein M482_823 PF00953 Glycosyl transferase family 4 M482_824 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain M482_824 PF07498 Rho termination factor, N-terminal domain M482_824 PF07497 Rho termination factor, RNA-binding domain M482_825 PF00085 Thioredoxin M482_826 PF00270 DEAD/DEAH box helicase M482_826 PF00271 Helicase conserved C-terminal domain M482_827 PF02541 Ppx/GppA phosphatase family M482_828 PF13361 UvrD-like helicase C-terminal domain M482_828 PF00580 UvrD/REP helicase N-terminal domain M482_832 PF02753 Pili assembly chaperone PapD, C-terminal domain M482_832 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain M482_833 PF00577 Outer membrane usher protein M482_833 PF13954 PapC N-terminal domain M482_833 PF13953 PapC C-terminal domain M482_835 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain M482_835 PF02753 Pili assembly chaperone PapD, C-terminal domain M482_836 PF01320 Colicin immunity protein / pyocin immunity protein M482_84 PF00324 Amino acid permease M482_841 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain M482_841 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain M482_842 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M482_842 PF03466 LysR substrate binding domain M482_848 PF00291 Pyridoxal-phosphate dependent enzyme M482_848 PF00585 C-terminal regulatory domain of Threonine dehydratase M482_849 PF00920 Dehydratase family M482_850 PF01063 Amino-transferase class IV M482_852 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain M482_852 PF00205 Thiamine pyrophosphate enzyme, central domain M482_852 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain M482_853 PF01078 Magnesium chelatase, subunit ChlI M482_853 PF13335 Magnesium chelatase, subunit ChlI C-terminal M482_854 PF04219 Protein of unknown function, DUF M482_855 PF02653 Branched-chain amino acid transport system / permease component M482_856 PF03466 LysR substrate binding domain M482_856 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M482_857 PF02653 Branched-chain amino acid transport system / permease component M482_858 PF00005 ABC transporter M482_859 PF13407 Periplasmic binding protein domain M482_86 PF03466 LysR substrate binding domain M482_86 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M482_868 PF02142 MGS-like domain M482_868 PF01808 AICARFT/IMPCHase bienzyme M482_869 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain M482_869 PF02843 Phosphoribosylglycinamide synthetase, C domain M482_869 PF02844 Phosphoribosylglycinamide synthetase, N domain M482_87 PF03601 Conserved hypothetical protein 698 M482_870 PF07356 Protein of unknown function (DUF1481) M482_871 PF00216 Bacterial DNA-binding protein M482_872 PF04222 Protein of unknown function (DUF416) M482_873 PF04493 Endonuclease V M482_874 PF01208 Uroporphyrinogen decarboxylase (URO-D) M482_876 PF00293 NUDIX domain M482_876 PF09297 NADH pyrophosphatase zinc ribbon domain M482_877 PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ M482_878 PF13667 ThiC-associated domain M482_878 PF01964 Radical SAM ThiC family M482_879 PF02581 Thiamine monophosphate synthase M482_88 PF01261 Xylose isomerase-like TIM barrel M482_880 PF00899 ThiF family M482_882 PF05690 Thiazole biosynthesis protein ThiG M482_883 PF05690 Thiazole biosynthesis protein ThiG M482_884 PF06968 Biotin and Thiamin Synthesis associated domain M482_884 PF04055 Radical SAM superfamily M482_885 PF06968 Biotin and Thiamin Synthesis associated domain M482_885 PF04055 Radical SAM superfamily M482_886 PF04983 RNA polymerase Rpb1, domain 3 M482_886 PF00623 RNA polymerase Rpb1, domain 2 M482_886 PF04997 RNA polymerase Rpb1, domain 1 M482_886 PF05000 RNA polymerase Rpb1, domain 4 M482_886 PF04998 RNA polymerase Rpb1, domain 5 M482_887 PF10385 RNA polymerase beta subunit external 1 domain M482_887 PF00562 RNA polymerase Rpb2, domain 6 M482_887 PF04560 RNA polymerase Rpb2, domain 7 M482_887 PF04561 RNA polymerase Rpb2, domain 2 M482_887 PF04563 RNA polymerase beta subunit M482_887 PF04565 RNA polymerase Rpb2, domain 3 M482_889 PF16320 Ribosomal protein L7/L12 dimerisation domain M482_889 PF00542 Ribosomal protein L7/L12 C-terminal domain M482_89 PF13954 PapC N-terminal domain M482_89 PF13953 PapC C-terminal domain M482_89 PF00577 Outer membrane usher protein M482_890 PF00466 Ribosomal protein L10 M482_891 PF00687 Ribosomal protein L1p/L10e family M482_892 PF03946 Ribosomal protein L11, N-terminal domain M482_892 PF00298 Ribosomal protein L11, RNA binding domain M482_893 PF00467 KOW motif M482_893 PF02357 Transcription termination factor nusG M482_894 PF00584 SecE/Sec61-gamma subunits of protein translocation complex M482_895 PF03144 Elongation factor Tu domain 2 M482_895 PF03143 Elongation factor Tu C-terminal domain M482_895 PF00009 Elongation factor Tu GTP binding domain M482_9 PF17763 Glutaminase/Asparaginase C-terminal domain M482_9 PF00710 Asparaginase, N-terminal M482_90 PF02753 Pili assembly chaperone PapD, C-terminal domain M482_90 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain M482_900 PF01695 IstB-like ATP binding protein M482_901 PF01695 IstB-like ATP binding protein M482_902 PF00665 Integrase core domain M482_902 PF02796 Helix-turn-helix domain of resolvase M482_903 PF12146 Serine aminopeptidase, S33 M482_904 PF00324 Amino acid permease M482_905 PF00221 Aromatic amino acid lyase M482_906 PF01175 Urocanase Rossmann-like domain M482_906 PF17391 Urocanase N-terminal domain M482_906 PF17392 Urocanase C-terminal domain M482_907 PF00291 Pyridoxal-phosphate dependent enzyme M482_908 PF00156 Phosphoribosyl transferase domain M482_911 PF01497 Periplasmic binding protein M482_912 PF01032 FecCD transport family M482_913 PF01032 FecCD transport family M482_915 PF00005 ABC transporter M482_918 PF13737 Transposase DDE domain M482_919 PF13737 Transposase DDE domain M482_92 PF17550 Family of unknown function M482_920 PF04606 Ogr/Delta-like zinc finger M482_922 PF00589 Phage integrase family M482_922 PF14659 Phage integrase, N-terminal SAM-like domain M482_922 PF13356 Arm DNA-binding domain M482_924 PF12833 Helix-turn-helix domain M482_925 PF02653 Branched-chain amino acid transport system / permease component M482_926 PF00005 ABC transporter M482_927 PF13407 Periplasmic binding protein domain M482_929 PF02782 FGGY family of carbohydrate kinases, C-terminal domain M482_929 PF00370 FGGY family of carbohydrate kinases, N-terminal domain M482_93 PF00486 Transcriptional regulatory protein, C terminal M482_931 PF02753 Pili assembly chaperone PapD, C-terminal domain M482_931 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain M482_932 PF13953 PapC C-terminal domain M482_932 PF13954 PapC N-terminal domain M482_932 PF00577 Outer membrane usher protein M482_933 PF13954 PapC N-terminal domain M482_933 PF00577 Outer membrane usher protein M482_933 PF13953 PapC C-terminal domain M482_934 PF00419 Fimbrial protein M482_935 PF01757 Acyltransferase family M482_937 PF13333 Integrase core domain M482_937 PF00665 Integrase core domain M482_937 PF13276 HTH-like domain M482_938 PF02219 Methylenetetrahydrofolate reductase M482_939 PF00742 Homoserine dehydrogenase M482_939 PF00696 Amino acid kinase family M482_939 PF03447 Homoserine dehydrogenase, NAD binding domain M482_94 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit M482_94 PF02378 Phosphotransferase system, EIIC M482_940 PF01053 Cys/Met metabolism PLP-dependent enzyme M482_941 PF01340 Met Apo-repressor, MetJ M482_942 PF05360 yiaA/B two helix domain M482_943 PF01197 Ribosomal protein L31 M482_944 PF18319 PriA DNA helicase Cys-rich region (CRR) domain M482_944 PF00270 DEAD/DEAH box helicase M482_944 PF18074 Primosomal protein N C-terminal domain M482_944 PF17764 3′ DNA-binding domain (3′BD) M482_944 PF00271 Helicase conserved C-terminal domain M482_946 PF00356 Bacterial regulatory proteins, lacI family M482_947 PF00356 Bacterial regulatory proteins, lacI family M482_948 PF05036 Sporulation related domain M482_949 PF00227 Proteasome subunit M482_95 PF00294 pfkB family carbohydrate kinase M482_950 PF07724 AAA domain (Cdc48 subfamily) M482_950 PF00004 ATPase family associated with various cellular activities (AAA) M482_950 PF10431 C-terminal, D2-small domain, of ClpB protein M482_951 PF01040 UbiA prenyltransferase family M482_952 PF03737 Aldolase/RraA M482_955 PF00529 HlyD membrane-fusion protein of T1SS M482_955 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion M482_956 PF00005 ABC transporter M482_956 PF03412 Peptidase C39 family M482_956 PF00664 ABC transporter transmembrane region M482_958 PF06005 Cell division protein ZapB M482_959 PF00230 Major intrinsic protein M482_96 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 M482_96 PF00381 PTS HPr component phosphorylation site M482_960 PF00370 FGGY family of carbohydrate kinases, N-terminal domain M482_960 PF02782 FGGY family of carbohydrate kinases, C-terminal domain M482_961 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded M482_962 PF00175 Oxidoreductase NAD-binding domain M482_962 PF00970 Oxidoreductase FAD-binding domain M482_963 PF05656 Protein of unknown function (DUF805) M482_964 PF07305 Protein of unknown function (DUF1454) M482_965 PF00121 Triosephosphate isomerase M482_966 PF03466 LysR substrate binding domain M482_966 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M482_967 PF02585 GlcNAc-PI de-N-acetylase M482_968 PF03737 Aldolase/RraA M482_969 PF00939 Sodium:sulfate symporter transmembrane region M482_97 PF00293 NUDIX domain M482_970 PF00939 Sodium:sulfate symporter transmembrane region M482_974 PF00365 Phosphofructokinase M482_975 PF01545 Cation efflux family M482_975 PF16916 Dimerisation domain of Zinc Transporter M482_976 PF04754 Putative transposase, YhgA-like M482_977 PF07813 LTXXQ motif family protein M482_978 PF00072 Response regulator receiver domain M482_978 PF00486 Transcriptional regulatory protein, C terminal M482_979 PF16527 Two-component sensor protein CpxA, periplasmic domain M482_979 PF00512 His Kinase A (phospho-acceptor) domain M482_979 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M482_979 PF00672 HAMP domain M482_98 PF02653 Branched-chain amino acid transport system / permease component M482_980 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain M482_980 PF12833 Helix-turn-helix domain M482_980 PF02805 Metal binding domain of Ada M482_980 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain M482_981 PF00588 SpoU rRNA Methylase family M482_982 PF06426 Serine acetyltransferase, N-terminal M482_982 PF00132 Bacterial transferase hexapeptide (six repeats) M482_983 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus M482_983 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus M482_984 PF02556 Preprotein translocase subunit SecB M482_985 PF00462 Glutaredoxin M482_986 PF00581 Rhodanese-like domain M482_987 PF06415 BPG-independent PGAM N-terminus (iPGM_N) M482_987 PF01676 Metalloenzyme superfamily M482_988 PF01551 Peptidase family M23 M482_989 PF04748 Divergent polysaccharide deacetylase M482_99 PF00005 ABC transporter M482_990 PF04748 Divergent polysaccharide deacetylase M482_991 PF08240 Alcohol dehydrogenase GroES-like domain M482_991 PF00107 Zinc-binding dehydrogenase M482_992 PF00155 Aminotransferase class I and II M482_993 PF01370 NAD dependent epimerase/dehydratase family M482_994 PF01075 Glycosyltransferase family 9 (heptosyltransferase) M482_995 PF01075 Glycosyltransferase family 9 (heptosyltransferase) M482_996 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) M482_997 PF00535 Glycosyl transferase family 2 M482_998 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain M482_998 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain M482_998 PF06827 Zinc finger found in FPG and IleRS M482_999 PF01467 Cytidylyltransferase-like