locus-tag class description M484_1 PF07690 Major Facilitator Superfamily M484_10 PF00266 Aminotransferase class-V M484_100 PF00571 CBS domain M484_100 PF00478 IMP dehydrogenase / GMP reductase domain M484_1000 PF00005 ABC transporter M484_1000 PF08402 TOBE domain M484_1001 PF00528 Binding-protein-dependent transport system inner membrane component M484_1002 PF00528 Binding-protein-dependent transport system inner membrane component M484_1004 PF03009 Glycerophosphoryl diester phosphodiesterase family M484_1006 PF00916 Sulfate permease family M484_1006 PF01740 STAS domain M484_1007 PF00793 DAHP synthetase I family M484_1008 PF13369 Transglutaminase-like superfamily M484_1009 PF04247 Invasion gene expression up-regulator, SirB M484_101 PF02540 NAD synthase M484_101 PF00958 GMP synthase C terminal domain M484_101 PF00117 Glutamine amidotransferase class-I M484_1010 PF17827 PrmC N-terminal domain M484_1010 PF13847 Methyltransferase domain M484_1011 PF00472 RF-1 domain M484_1011 PF03462 PCRF domain M484_1012 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain M484_1012 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain M484_1012 PF01488 Shikimate / quinate 5-dehydrogenase M484_1013 PF03550 Outer membrane lipoprotein LolB M484_1014 PF00288 GHMP kinases N terminal domain M484_1014 PF08544 GHMP kinases C terminal M484_1015 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase M484_1015 PF14572 Phosphoribosyl synthetase-associated domain M484_1016 PF10762 Protein of unknown function (DUF2583) M484_1017 PF01195 Peptidyl-tRNA hydrolase M484_1018 PF01926 50S ribosome-binding GTPase M484_1018 PF06071 Protein of unknown function (DUF933) M484_102 PF01797 Transposase IS200 like M484_1027 PF02129 X-Pro dipeptidyl-peptidase (S15 family) M484_1028 PF00486 Transcriptional regulatory protein, C terminal M484_1028 PF00072 Response regulator receiver domain M484_1029 PF02796 Helix-turn-helix domain of resolvase M484_1029 PF00665 Integrase core domain M484_103 PF05638 Type VI secretion system effector, Hcp M484_1030 PF01695 IstB-like ATP binding protein M484_1031 PF00072 Response regulator receiver domain M484_1031 PF00486 Transcriptional regulatory protein, C terminal M484_1032 PF00672 HAMP domain M484_1032 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M484_1032 PF00512 His Kinase A (phospho-acceptor) domain M484_1041 PF08242 Methyltransferase domain M484_1046 PF00872 Transposase, Mutator family M484_1055 PF01370 NAD dependent epimerase/dehydratase family M484_1056 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III M484_1056 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal M484_1057 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III M484_1057 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal M484_1059 PF05962 HutD M484_1060 PF01979 Amidohydrolase family M484_1061 PF07702 UTRA domain M484_1061 PF00392 Bacterial regulatory proteins, gntR family M484_1062 PF01979 Amidohydrolase family M484_1063 PF02796 Helix-turn-helix domain of resolvase M484_1063 PF00665 Integrase core domain M484_1064 PF01695 IstB-like ATP binding protein M484_1066 PF00872 Transposase, Mutator family M484_1067 PF00267 Gram-negative porin M484_1068 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family M484_1069 PF04996 Succinylarginine dihydrolase M484_1070 PF00171 Aldehyde dehydrogenase family M484_1071 PF04958 Arginine N-succinyltransferase beta subunit M484_1072 PF00202 Aminotransferase class-III M484_1075 PF00155 Aminotransferase class I and II M484_1075 PF00392 Bacterial regulatory proteins, gntR family M484_1076 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term M484_1076 PF07730 Histidine kinase M484_1076 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M484_1076 PF00672 HAMP domain M484_1078 PF01699 Sodium/calcium exchanger protein M484_1079 PF02562 PhoH-like protein M484_1082 PF13994 PgaD-like protein M484_1083 PF00535 Glycosyl transferase family 2 M484_1084 PF01522 Polysaccharide deacetylase M484_1084 PF14883 Hypothetical glycosyl hydrolase family 13 M484_1086 PF00557 Metallopeptidase family M24 M484_1087 PF09313 Domain of unknown function (DUF1971) M484_1087 PF03848 Tellurite resistance protein TehB M484_1089 PF00578 AhpC/TSA family M484_109 PF00872 Transposase, Mutator family M484_1090 PF12704 MacB-like periplasmic core domain M484_1090 PF02687 FtsX-like permease family M484_1090 PF00005 ABC transporter M484_1092 PF02687 FtsX-like permease family M484_1092 PF12704 MacB-like periplasmic core domain M484_1092 PF00005 ABC transporter M484_1094 PF10634 Fe2+ transport protein M484_1095 PF03239 Iron permease FTR1 family M484_1098 PF04960 Glutaminase M484_1099 PF00455 DeoR C terminal sensor domain M484_1099 PF08220 DeoR-like helix-turn-helix domain M484_11 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) M484_1100 PF00324 Amino acid permease M484_1101 PF00155 Aminotransferase class I and II M484_1102 PF02508 Rnf-Nqr subunit, membrane protein M484_1104 PF04909 Amidohydrolase M484_1108 PF03466 LysR substrate binding domain M484_1108 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M484_1109 PF03328 HpcH/HpaI aldolase/citrate lyase family M484_1110 PF01575 MaoC like domain M484_1111 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain M484_1111 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain M484_1113 PF00196 Bacterial regulatory proteins, luxR family M484_1113 PF00072 Response regulator receiver domain M484_1114 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M484_1114 PF00512 His Kinase A (phospho-acceptor) domain M484_1114 PF01627 Hpt domain M484_1114 PF00989 PAS fold M484_1114 PF00497 Bacterial extracellular solute-binding proteins, family 3 M484_1114 PF00072 Response regulator receiver domain M484_1116 PF02753 Pili assembly chaperone PapD, C-terminal domain M484_1116 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain M484_1117 PF00577 Outer membrane usher protein M484_1117 PF13953 PapC C-terminal domain M484_1117 PF13954 PapC N-terminal domain M484_1119 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain M484_1119 PF02753 Pili assembly chaperone PapD, C-terminal domain M484_112 PF08543 Phosphomethylpyrimidine kinase M484_1120 PF00872 Transposase, Mutator family M484_1123 PF13356 Arm DNA-binding domain M484_1123 PF00589 Phage integrase family M484_1124 PF00425 chorismate binding enzyme M484_1125 PF07690 Major Facilitator Superfamily M484_1126 PF00664 ABC transporter transmembrane region M484_1126 PF00005 ABC transporter M484_1127 PF04954 Siderophore-interacting protein M484_1127 PF00005 ABC transporter M484_1127 PF08021 Siderophore-interacting FAD-binding domain M484_1127 PF00664 ABC transporter transmembrane region M484_1129 PF08242 Methyltransferase domain M484_1129 PF00668 Condensation domain M484_1129 PF00501 AMP-binding enzyme M484_1129 PF00550 Phosphopantetheine attachment site M484_1130 PF02801 Beta-ketoacyl synthase, C-terminal domain M484_1130 PF16197 Ketoacyl-synthetase C-terminal extension M484_1130 PF00698 Acyl transferase domain M484_1130 PF00668 Condensation domain M484_1130 PF00550 Phosphopantetheine attachment site M484_1130 PF00109 Beta-ketoacyl synthase, N-terminal domain M484_1132 PF00975 Thioesterase domain M484_1133 PF00501 AMP-binding enzyme M484_1133 PF13193 AMP-binding enzyme C-terminal domain M484_1134 PF00593 TonB dependent receptor M484_1134 PF07715 TonB-dependent Receptor Plug Domain M484_1142 PF01695 IstB-like ATP binding protein M484_1143 PF00665 Integrase core domain M484_1143 PF02796 Helix-turn-helix domain of resolvase M484_1146 PF08402 TOBE domain M484_1146 PF00005 ABC transporter M484_1147 PF00528 Binding-protein-dependent transport system inner membrane component M484_1148 PF00528 Binding-protein-dependent transport system inner membrane component M484_1149 PF01547 Bacterial extracellular solute-binding protein M484_115 PF00781 Diacylglycerol kinase catalytic domain M484_1150 PF02894 Oxidoreductase family, C-terminal alpha/beta domain M484_1150 PF01408 Oxidoreductase family, NAD-binding Rossmann fold M484_1157 PF00872 Transposase, Mutator family M484_1158 PF00872 Transposase, Mutator family M484_117 PF07411 Domain of unknown function (DUF1508) M484_1170 PF05638 Type VI secretion system effector, Hcp M484_1179 PF01066 CDP-alcohol phosphatidyltransferase M484_118 PF00486 Transcriptional regulatory protein, C terminal M484_118 PF00072 Response regulator receiver domain M484_1180 PF02151 UvrB/uvrC motif M484_1180 PF08459 UvrC Helix-hairpin-helix N-terminal M484_1180 PF01541 GIY-YIG catalytic domain M484_1181 PF00072 Response regulator receiver domain M484_1181 PF00196 Bacterial regulatory proteins, luxR family M484_1182 PF10769 Protein of unknown function (DUF2594) M484_1183 PF06942 GlpM protein M484_1185 PF13505 Outer membrane protein beta-barrel domain M484_1187 PF00324 Amino acid permease M484_1188 PF01344 Kelch motif M484_1189 PF03358 NADPH-dependent FMN reductase M484_119 PF00672 HAMP domain M484_119 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M484_119 PF00512 His Kinase A (phospho-acceptor) domain M484_1190 PF04261 Dyp-type peroxidase family M484_1191 PF09375 Imelysin M484_1191 PF13473 Cupredoxin-like domain M484_1192 PF03239 Iron permease FTR1 family M484_1193 PF00474 Sodium:solute symporter family M484_1195 PF00171 Aldehyde dehydrogenase family M484_1195 PF18327 Proline utilization A proline dehydrogenase N-terminal domain M484_1195 PF14850 DNA-binding domain of Proline dehydrogenase M484_1195 PF01619 Proline dehydrogenase M484_12 PF02224 Cytidylate kinase M484_120 PF07690 Major Facilitator Superfamily M484_1202 PF00291 Pyridoxal-phosphate dependent enzyme M484_1203 PF02899 Phage integrase, N-terminal SAM-like domain M484_1204 PF04542 Sigma-70 region 2 M484_1204 PF04545 Sigma-70, region 4 M484_1204 PF04539 Sigma-70 region 3 M484_1205 PF00669 Bacterial flagellin N-terminal helical region M484_1205 PF08884 Flagellin D3 domain M484_1205 PF00700 Bacterial flagellin C-terminal helical region M484_1206 PF02465 Flagellar hook-associated protein 2 N-terminus M484_1206 PF07195 Flagellar hook-associated protein 2 C-terminus M484_1206 PF07196 Flagellin hook IN motif M484_1207 PF02561 Flagellar protein FliS M484_1208 PF05400 Flagellar protein FliT M484_1209 PF12833 Helix-turn-helix domain M484_121 PF00873 AcrB/AcrD/AcrF family M484_1210 PF01966 HD domain M484_1211 PF00730 HhH-GPD superfamily base excision DNA repair protein M484_1214 PF02049 Flagellar hook-basal body complex protein FliE M484_1215 PF01514 Secretory protein of YscJ/FliF family M484_1215 PF08345 Flagellar M-ring protein C-terminal M484_1216 PF14841 FliG middle domain M484_1216 PF01706 FliG C-terminal domain M484_1216 PF14842 FliG N-terminal domain M484_1217 PF02108 Flagellar assembly protein FliH M484_1218 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain M484_1218 PF18269 T3SS EscN ATPase C-terminal domain M484_1219 PF02050 Flagellar FliJ protein M484_122 PF00873 AcrB/AcrD/AcrF family M484_1220 PF02120 Flagellar hook-length control protein FliK M484_1221 PF03748 Flagellar basal body-associated protein FliL M484_1222 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term M484_1222 PF02154 Flagellar motor switch protein FliM M484_1223 PF16973 Flagellar motor switch protein FliN N-terminal M484_1223 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term M484_1224 PF04347 Flagellar biosynthesis protein, FliO M484_1225 PF00813 FliP family M484_1226 PF01313 Bacterial export proteins, family 3 M484_1227 PF01311 Bacterial export proteins, family 1 M484_123 PF00873 AcrB/AcrD/AcrF family M484_1230 PF00294 pfkB family carbohydrate kinase M484_1231 PF02653 Branched-chain amino acid transport system / permease component M484_1232 PF00005 ABC transporter M484_1233 PF13407 Periplasmic binding protein domain M484_1234 PF02653 Branched-chain amino acid transport system / permease component M484_1235 PF00596 Class II Aldolase and Adducin N-terminal domain M484_1236 PF04198 Putative sugar-binding domain M484_1237 PF00669 Bacterial flagellin N-terminal helical region M484_1238 PF06429 Flagellar basal body rod FlgEFG protein C-terminal M484_1238 PF00460 Flagella basal body rod protein M484_1239 PF10135 Rod binding protein M484_1239 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase M484_124 PF13533 Biotin-lipoyl like M484_1240 PF02119 Flagellar P-ring protein M484_1241 PF02107 Flagellar L-ring protein M484_1242 PF00460 Flagella basal body rod protein M484_1242 PF06429 Flagellar basal body rod FlgEFG protein C-terminal M484_1243 PF00460 Flagella basal body rod protein M484_1243 PF06429 Flagellar basal body rod FlgEFG protein C-terminal M484_1244 PF00460 Flagella basal body rod protein M484_1244 PF07559 Flagellar basal body protein FlaE M484_1244 PF06429 Flagellar basal body rod FlgEFG protein C-terminal M484_1245 PF03963 Flagellar hook capping protein - N-terminal region M484_1245 PF13861 FlgD Tudor-like domain M484_1245 PF13860 FlgD Ig-like domain M484_1246 PF00460 Flagella basal body rod protein M484_1246 PF06429 Flagellar basal body rod FlgEFG protein C-terminal M484_1247 PF00460 Flagella basal body rod protein M484_1248 PF17656 FlgA N-terminal domain M484_1248 PF13144 Chaperone for flagella basal body P-ring formation M484_1249 PF04316 Anti-sigma-28 factor, FlgM M484_125 PF00005 ABC transporter M484_125 PF08402 TOBE domain M484_1250 PF05130 FlgN protein M484_1251 PF02369 Bacterial Ig-like domain (group 1) M484_1251 PF09134 Invasin, domain 3 M484_1251 PF11924 Inverse autotransporter, beta-domain M484_1251 PF07979 Intimin C-type lectin domain M484_1252 PF01797 Transposase IS200 like M484_1255 PF06167 Glucose-regulated metallo-peptidase M90 M484_1257 PF00356 Bacterial regulatory proteins, lacI family M484_1257 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family M484_1258 PF01306 LacY proton/sugar symporter M484_1259 PF16874 Glycosyl hydrolase family 36 C-terminal domain M484_1259 PF16875 Glycosyl hydrolase family 36 N-terminal domain M484_126 PF00392 Bacterial regulatory proteins, gntR family M484_126 PF00155 Aminotransferase class I and II M484_1262 PF01648 4'-phosphopantetheinyl transferase superfamily M484_1262 PF17837 4'-phosphopantetheinyl transferase N-terminal domain M484_1263 PF03480 Bacterial extracellular solute-binding protein, family 7 M484_1265 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component M484_1266 PF00196 Bacterial regulatory proteins, luxR family M484_1266 PF00072 Response regulator receiver domain M484_1268 PF09831 Uncharacterized protein conserved in bacteria (DUF2058) M484_127 PF00202 Aminotransferase class-III M484_1270 PF01522 Polysaccharide deacetylase M484_1272 PF01554 MatE M484_1273 PF00764 Arginosuccinate synthase M484_1274 PF01070 FMN-dependent dehydrogenase M484_1276 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain M484_1276 PF13378 Enolase C-terminal domain-like M484_1277 PF01557 Fumarylacetoacetate (FAA) hydrolase family M484_1279 PF04134 Protein of unknown function, DUF393 M484_1280 PF07690 Major Facilitator Superfamily M484_1281 PF09134 Invasin, domain 3 M484_1281 PF02369 Bacterial Ig-like domain (group 1) M484_1281 PF11924 Inverse autotransporter, beta-domain M484_1282 PF00872 Transposase, Mutator family M484_1283 PF00872 Transposase, Mutator family M484_1284 PF04363 Protein of unknown function (DUF496) M484_1286 PF00929 Exonuclease M484_1286 PF08411 Exonuclease C-terminal M484_1287 PF13520 Amino acid permease M484_1289 PF00465 Iron-containing alcohol dehydrogenase M484_129 PF00528 Binding-protein-dependent transport system inner membrane component M484_1290 PF00005 ABC transporter M484_1291 PF00005 ABC transporter M484_1292 PF02653 Branched-chain amino acid transport system / permease component M484_1294 PF01370 NAD dependent epimerase/dehydratase family M484_1295 PF08029 HisG, C-terminal domain M484_1295 PF01634 ATP phosphoribosyltransferase M484_1296 PF00815 Histidinol dehydrogenase M484_1297 PF00155 Aminotransferase class I and II M484_1298 PF00475 Imidazoleglycerol-phosphate dehydratase M484_1299 PF00117 Glutamine amidotransferase class-I M484_13 PF00575 S1 RNA binding domain M484_130 PF00528 Binding-protein-dependent transport system inner membrane component M484_1300 PF00977 Histidine biosynthesis protein M484_1301 PF00977 Histidine biosynthesis protein M484_1302 PF01502 Phosphoribosyl-AMP cyclohydrolase M484_1302 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase M484_1303 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain M484_1303 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase M484_1304 PF00483 Nucleotidyl transferase M484_1305 PF00483 Nucleotidyl transferase M484_1306 PF06276 Ferric iron reductase FhuF-like transporter M484_1306 PF04183 IucA / IucC family M484_1307 PF07715 TonB-dependent Receptor Plug Domain M484_1307 PF07660 Secretin and TonB N terminus short domain M484_1307 PF00593 TonB dependent receptor M484_1308 PF01497 Periplasmic binding protein M484_1309 PF01032 FecCD transport family M484_131 PF00012 Hsp70 protein M484_1310 PF01032 FecCD transport family M484_1311 PF00005 ABC transporter M484_1312 PF04183 IucA / IucC family M484_1312 PF06276 Ferric iron reductase FhuF-like transporter M484_1314 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) M484_1315 PF00282 Pyridoxal-dependent decarboxylase conserved domain M484_1316 PF06276 Ferric iron reductase FhuF-like transporter M484_1316 PF11575 FhuF 2Fe-2S C-terminal domain M484_1317 PF03471 Transporter associated domain M484_1317 PF00571 CBS domain M484_1317 PF03741 Integral membrane protein TerC family M484_1318 PF05170 AsmA family M484_1319 PF00692 dUTPase M484_132 PF01769 Divalent cation transporter M484_132 PF03448 MgtE intracellular N domain M484_132 PF00571 CBS domain M484_1320 PF00485 Phosphoribulokinase / Uridine kinase family M484_1321 PF10609 NUBPL iron-transfer P-loop NTPase M484_1322 PF09334 tRNA synthetases class I (M) M484_1322 PF01588 Putative tRNA binding domain M484_1323 PF01797 Transposase IS200 like M484_1327 PF07690 Major Facilitator Superfamily M484_1328 PF03788 LrgA family M484_1329 PF04172 LrgB-like family M484_133 PF02541 Ppx/GppA phosphatase family M484_1330 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region M484_1330 PF08211 Cytidine and deoxycytidylate deaminase zinc-binding region M484_1331 PF03949 Malic enzyme, NAD binding domain M484_1331 PF00390 Malic enzyme, N-terminal domain M484_1332 PF02698 DUF218 domain M484_1333 PF02653 Branched-chain amino acid transport system / permease component M484_1334 PF02796 Helix-turn-helix domain of resolvase M484_1334 PF00665 Integrase core domain M484_1336 PF01695 IstB-like ATP binding protein M484_1337 PF09092 Lyase, N terminal M484_1337 PF09093 Lyase, catalytic M484_1337 PF02884 Polysaccharide lyase family 8, C-terminal beta-sandwich domain M484_1337 PF02278 Polysaccharide lyase family 8, super-sandwich domain M484_134 PF13090 Polyphosphate kinase C-terminal domain 2 M484_134 PF13089 Polyphosphate kinase N-terminal domain M484_134 PF17941 Polyphosphate kinase C-terminal domain 1 M484_134 PF02503 Polyphosphate kinase middle domain M484_1341 PF00484 Carbonic anhydrase M484_1344 PF00263 Bacterial type II and III secretion system protein M484_1344 PF03958 Bacterial type II/III secretion system short domain M484_1347 PF00482 Type II secretion system (T2SS), protein F M484_1348 PF08334 Type II secretion system (T2SS), protein G M484_1348 PF07963 Prokaryotic N-terminal methylation motif M484_135 PF00528 Binding-protein-dependent transport system inner membrane component M484_1356 PF06750 Bacterial Peptidase A24 N-terminal domain M484_1356 PF01478 Type IV leader peptidase family M484_1358 PF00872 Transposase, Mutator family M484_1359 PF00872 Transposase, Mutator family M484_136 PF00528 Binding-protein-dependent transport system inner membrane component M484_1363 PF02203 Tar ligand binding domain homologue M484_1363 PF00672 HAMP domain M484_1363 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain M484_1365 PF03466 LysR substrate binding domain M484_1365 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M484_1366 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M484_1366 PF03466 LysR substrate binding domain M484_1367 PF07690 Major Facilitator Superfamily M484_1368 PF00356 Bacterial regulatory proteins, lacI family M484_1369 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain M484_1369 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain M484_137 PF00005 ABC transporter M484_1370 PF01568 Molydopterin dinucleotide binding domain M484_1370 PF00384 Molybdopterin oxidoreductase M484_1371 PF00501 AMP-binding enzyme M484_1371 PF13193 AMP-binding enzyme C-terminal domain M484_1371 PF01553 Acyltransferase M484_1372 PF07690 Major Facilitator Superfamily M484_1375 PF00248 Aldo/keto reductase family M484_1376 PF02976 DNA mismatch repair enzyme MutH M484_1377 PF00293 NUDIX domain M484_1378 PF02896 PEP-utilising enzyme, TIM barrel domain M484_1378 PF01590 GAF domain M484_1378 PF05524 PEP-utilising enzyme, N-terminal M484_1378 PF00391 PEP-utilising enzyme, mobile domain M484_1379 PF01790 Prolipoprotein diacylglyceryl transferase M484_1380 PF00303 Thymidylate synthase M484_1386 PF17946 RecC C-terminal domain M484_1387 PF16187 Middle or third domain of peptidase_M16 M484_1387 PF00675 Insulinase (Peptidase family M16) M484_1387 PF05193 Peptidase M16 inactive domain M484_1388 PF00580 UvrD/REP helicase N-terminal domain M484_1388 PF12705 PD-(D/E)XK nuclease superfamily M484_1388 PF13361 UvrD-like helicase C-terminal domain M484_1389 PF13538 UvrD-like helicase C-terminal domain M484_1390 PF00583 Acetyltransferase (GNAT) family M484_1390 PF00696 Amino acid kinase family M484_1391 PF01695 IstB-like ATP binding protein M484_1392 PF02796 Helix-turn-helix domain of resolvase M484_1392 PF00665 Integrase core domain M484_1393 PF00696 Amino acid kinase family M484_1393 PF00583 Acetyltransferase (GNAT) family M484_1394 PF11741 AMIN domain M484_1394 PF01520 N-acetylmuramoyl-L-alanine amidase M484_1397 PF06725 3D domain M484_1397 PF03562 MltA specific insert domain M484_1398 PF00899 ThiF family M484_1399 PF02657 Fe-S metabolism associated domain M484_140 PF13302 Acetyltransferase (GNAT) domain M484_1400 PF00266 Aminotransferase class-V M484_1402 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M484_1402 PF03466 LysR substrate binding domain M484_1403 PF04241 Protein of unknown function (DUF423) M484_1404 PF01728 FtsJ-like methyltransferase M484_1404 PF18125 RlmM ferredoxin-like domain M484_1405 PF01367 5'-3' exonuclease, C-terminal SAM fold M484_1405 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain M484_1406 PF03641 Possible lysine decarboxylase M484_1406 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases M484_1406 PF11892 Domain of unknown function (DUF3412) M484_1407 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term M484_1407 PF14489 QueF-like protein M484_1408 PF07348 Syd protein (SUKH-2) M484_1409 PF01797 Transposase IS200 like M484_141 PF00551 Formyl transferase M484_1410 PF04287 tRNA pseudouridine synthase C M484_1411 PF00849 RNA pseudouridylate synthase M484_1412 PF00258 Flavodoxin M484_1413 PF11944 Protein of unknown function (DUF3461) M484_1414 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal M484_1414 PF00132 Bacterial transferase hexapeptide (six repeats) M484_1414 PF14602 Hexapeptide repeat of succinyl-transferase M484_1415 PF08335 GlnD PII-uridylyltransferase M484_1415 PF01966 HD domain M484_1415 PF01842 ACT domain M484_1415 PF01909 Nucleotidyltransferase domain M484_1416 PF00557 Metallopeptidase family M24 M484_1417 PF00318 Ribosomal protein S2 M484_1418 PF00889 Elongation factor TS M484_1419 PF00696 Amino acid kinase family M484_142 PF00586 AIR synthase related protein, N-terminal domain M484_142 PF02769 AIR synthase related protein, C-terminal domain M484_1420 PF01765 Ribosome recycling factor M484_1421 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase M484_1421 PF13288 DXP reductoisomerase C-terminal domain M484_1421 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain M484_1422 PF01255 Putative undecaprenyl diphosphate synthase M484_1424 PF17820 PDZ domain M484_1424 PF02163 Peptidase family M50 M484_1425 PF07244 Surface antigen variable number repeat M484_1425 PF01103 Surface antigen M484_1426 PF03938 Outer membrane protein (OmpH-like) M484_1427 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD M484_1427 PF00132 Bacterial transferase hexapeptide (six repeats) M484_1428 PF07977 FabA-like domain M484_1429 PF00132 Bacterial transferase hexapeptide (six repeats) M484_1429 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 M484_1430 PF02684 Lipid-A-disaccharide synthetase M484_1431 PF01351 Ribonuclease HII M484_1432 PF01336 OB-fold nucleic acid binding domain M484_1432 PF17657 Bacterial DNA polymerase III alpha subunit finger domain M484_1432 PF07733 Bacterial DNA polymerase III alpha NTPase domain M484_1432 PF14579 Helix-hairpin-helix motif M484_1432 PF02811 PHP domain M484_1433 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit M484_1434 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily M484_1435 PF01171 PP-loop family M484_1435 PF09179 TilS substrate binding domain M484_1435 PF11734 TilS substrate C-terminal domain M484_1436 PF00034 Cytochrome c M484_1437 PF07073 Modulator of Rho-dependent transcription termination (ROF) M484_1438 PF06786 Uncharacterised protein family (UPF0253) M484_1439 PF07152 YaeQ protein M484_144 PF00308 Bacterial dnaA protein M484_1440 PF00472 RF-1 domain M484_1441 PF04170 NlpE N-terminal domain M484_1441 PF17185 NlpE C-terminal OB domain M484_1442 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) M484_1442 PF03129 Anticodon binding domain M484_1442 PF04073 Aminoacyl-tRNA editing domain M484_1443 PF01980 tRNA-methyltransferase O M484_1443 PF18389 TrmO C-terminal domain M484_1444 PF16358 RcsF lipoprotein M484_1445 PF03180 NLPA lipoprotein M484_1446 PF00528 Binding-protein-dependent transport system inner membrane component M484_1447 PF00005 ABC transporter M484_1447 PF09383 NIL domain M484_145 PF03960 ArsC family M484_1455 PF00248 Aldo/keto reductase family M484_1457 PF03372 Endonuclease/Exonuclease/phosphatase family M484_1458 PF01476 LysM domain M484_1458 PF01464 Transglycosylase SLT domain M484_1459 PF16123 Hydroxyacylglutathione hydrolase C-terminus M484_1459 PF00753 Metallo-beta-lactamase superfamily M484_146 PF01435 Peptidase family M48 M484_146 PF07720 Tetratricopeptide repeat M484_1460 PF08241 Methyltransferase domain M484_1461 PF00075 RNase H M484_1462 PF00929 Exonuclease M484_1464 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin M484_1466 PF04069 Substrate binding domain of ABC-type glycine betaine transport system M484_1467 PF00528 Binding-protein-dependent transport system inner membrane component M484_1468 PF00005 ABC transporter M484_1468 PF00571 CBS domain M484_1469 PF00268 Ribonucleotide reductase, small chain M484_147 PF01594 AI-2E family transporter M484_1470 PF08343 Ribonucleotide reductase N-terminal M484_1470 PF00317 Ribonucleotide reductase, all-alpha domain M484_1470 PF02867 Ribonucleotide reductase, barrel domain M484_1471 PF07972 NrdI Flavodoxin like M484_1473 PF06392 Acid shock protein repeat M484_1474 PF09400 Protein of unknown function (DUF2002) M484_1475 PF06711 Protein of unknown function (DUF1198) M484_1477 PF00313 'Cold-shock' DNA-binding domain M484_1478 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle M484_1479 PF00528 Binding-protein-dependent transport system inner membrane component M484_1480 PF00528 Binding-protein-dependent transport system inner membrane component M484_1480 PF12911 N-terminal TM domain of oligopeptide transport permease C M484_1481 PF00005 ABC transporter M484_1482 PF00005 ABC transporter M484_1484 PF00547 Urease, gamma subunit M484_1485 PF00699 Urease beta subunit M484_1486 PF00449 Urease alpha-subunit, N-terminal domain M484_1486 PF01979 Amidohydrolase family M484_1487 PF02814 UreE urease accessory protein, N-terminal domain M484_1487 PF05194 UreE urease accessory protein, C-terminal domain M484_1488 PF01730 UreF M484_1489 PF02492 CobW/HypB/UreG, nucleotide-binding domain M484_1490 PF01774 UreD urease accessory protein M484_1491 PF03253 Urea transporter M484_1492 PF03824 High-affinity nickel-transport protein M484_1493 PF06411 HdeA/HdeB family M484_1494 PF02254 TrkA-N domain M484_1494 PF07885 Ion channel M484_1495 PF02537 CrcB-like protein, Camphor Resistance (CrcB) M484_1496 PF02537 CrcB-like protein, Camphor Resistance (CrcB) M484_1497 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit M484_1498 PF02378 Phosphotransferase system, EIIC M484_1499 PF02378 Phosphotransferase system, EIIC M484_15 PF00216 Bacterial DNA-binding protein M484_150 PF00578 AhpC/TSA family M484_1500 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit M484_1501 PF07883 Cupin domain M484_1501 PF12833 Helix-turn-helix domain M484_1502 PF04794 YdjC-like protein M484_1505 PF17206 SeqA protein N-terminal domain M484_1505 PF03925 SeqA protein C-terminal domain M484_1506 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II M484_1506 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I M484_1506 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain M484_1506 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III M484_151 PF01842 ACT domain M484_1510 PF00486 Transcriptional regulatory protein, C terminal M484_1510 PF00072 Response regulator receiver domain M484_1511 PF02702 Osmosensitive K+ channel His kinase sensor domain M484_1511 PF00512 His Kinase A (phospho-acceptor) domain M484_1511 PF13492 GAF domain M484_1511 PF13493 Domain of unknown function (DUF4118) M484_1511 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M484_1512 PF00512 His Kinase A (phospho-acceptor) domain M484_1512 PF02702 Osmosensitive K+ channel His kinase sensor domain M484_1512 PF13493 Domain of unknown function (DUF4118) M484_1512 PF13492 GAF domain M484_1512 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M484_1513 PF02669 K+-transporting ATPase, c chain M484_1515 PF03814 Potassium-transporting ATPase A subunit M484_1516 PF10725 Protein of unknown function (DUF2517) M484_1517 PF08349 Protein of unknown function (DUF1722) M484_1518 PF00875 DNA photolyase M484_1518 PF03441 FAD binding domain of DNA photolyase M484_1519 PF02112 cAMP phosphodiesterases class-II M484_152 PF00701 Dihydrodipicolinate synthetase family M484_1520 PF01784 NIF3 (NGG1p interacting factor 3) M484_1522 PF02682 Carboxyltransferase domain, subdomain C and D M484_1523 PF02626 Carboxyltransferase domain, subdomain A and B M484_1524 PF03746 LamB/YcsF family M484_1527 PF01470 Pyroglutamyl peptidase M484_1528 PF03167 Uracil DNA glycosylase superfamily M484_1529 PF01228 Glycine radical M484_153 PF06804 NlpB/DapX lipoprotein M484_1532 PF12796 Ankyrin repeats (3 copies) M484_1534 PF00271 Helicase conserved C-terminal domain M484_1534 PF00270 DEAD/DEAH box helicase M484_1535 PF05175 Methyltransferase small domain M484_1536 PF00890 FAD binding domain M484_1536 PF02910 Fumarate reductase flavoprotein C-term M484_1537 PF08281 Sigma-70, region 4 M484_1537 PF04542 Sigma-70 region 2 M484_1538 PF03872 Anti sigma-E protein RseA, N-terminal domain M484_1538 PF03873 Anti sigma-E protein RseA, C-terminal domain M484_1539 PF03888 MucB/RseB N-terminal domain M484_1539 PF17188 MucB/RseB C-terminal domain M484_154 PF01797 Transposase IS200 like M484_1542 PF00009 Elongation factor Tu GTP binding domain M484_1542 PF03144 Elongation factor Tu domain 2 M484_1542 PF06421 GTP-binding protein LepA C-terminus M484_1542 PF00679 Elongation factor G C-terminus M484_1543 PF10502 Signal peptidase, peptidase S26 M484_1544 PF14622 Ribonuclease-III-like M484_1544 PF00035 Double-stranded RNA binding motif M484_1545 PF01926 50S ribosome-binding GTPase M484_1545 PF07650 KH domain M484_1546 PF02565 Recombination protein O C terminal M484_1546 PF11967 Recombination protein O N terminal M484_1547 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ M484_1548 PF01648 4'-phosphopantetheinyl transferase superfamily M484_1549 PF01797 Transposase IS200 like M484_155 PF01259 SAICAR synthetase M484_1550 PF02801 Beta-ketoacyl synthase, C-terminal domain M484_1550 PF00109 Beta-ketoacyl synthase, N-terminal domain M484_1551 PF01695 IstB-like ATP binding protein M484_1552 PF01695 IstB-like ATP binding protein M484_1553 PF02796 Helix-turn-helix domain of resolvase M484_1553 PF00665 Integrase core domain M484_1554 PF00109 Beta-ketoacyl synthase, N-terminal domain M484_1554 PF02801 Beta-ketoacyl synthase, C-terminal domain M484_1556 PF07977 FabA-like domain M484_1557 PF05362 Lon protease (S16) C-terminal proteolytic domain M484_1557 PF13654 AAA domain M484_1558 PF17414 MatP C-terminal ribbon-helix-helix domain M484_1558 PF06303 MatP N-terminal domain M484_1559 PF01797 Transposase IS200 like M484_156 PF04228 Putative neutral zinc metallopeptidase M484_1560 PF01797 Transposase IS200 like M484_1561 PF00691 OmpA family M484_1561 PF01389 OmpA-like transmembrane domain M484_1562 PF03846 Cell division inhibitor SulA M484_1563 PF04994 TfoX C-terminal domain M484_1563 PF04993 TfoX N-terminal domain M484_1564 PF12805 FUSC-like inner membrane protein yccS M484_1565 PF03733 Inner membrane component domain M484_1566 PF00580 UvrD/REP helicase N-terminal domain M484_1566 PF12462 DNA helicase IV / RNA helicase N terminal M484_1566 PF13361 UvrD-like helicase C-terminal domain M484_1567 PF02142 MGS-like domain M484_1568 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) M484_1569 PF13380 CoA binding domain M484_157 PF04284 Protein of unknown function (DUF441) M484_1570 PF08755 Hemimethylated DNA-binding protein YccV like M484_1571 PF10672 S-adenosylmethionine-dependent methyltransferase M484_1571 PF17785 PUA-like domain M484_1572 PF00708 Acylphosphatase M484_1573 PF04358 DsrC like protein M484_1575 PF13610 DDE domain M484_1579 PF08031 Berberine and berberine like M484_1579 PF01565 FAD binding domain M484_158 PF08351 Domain of unknown function (DUF1726) M484_158 PF17176 tRNA-binding domain M484_158 PF13718 GNAT acetyltransferase 2 M484_158 PF05127 Helicase M484_1582 PF07977 FabA-like domain M484_1583 PF02801 Beta-ketoacyl synthase, C-terminal domain M484_1583 PF00109 Beta-ketoacyl synthase, N-terminal domain M484_1585 PF01154 Hydroxymethylglutaryl-coenzyme A synthase N terminal M484_1585 PF08540 Hydroxymethylglutaryl-coenzyme A synthase C terminal M484_1587 PF00378 Enoyl-CoA hydratase/isomerase M484_159 PF13980 Uncharacterised protein family (UPF0370) M484_1590 PF00550 Phosphopantetheine attachment site M484_1591 PF00698 Acyl transferase domain M484_1597 PF05736 OprF membrane domain M484_1597 PF00691 OmpA family M484_1599 PF17871 AAA lid domain M484_1599 PF07724 AAA domain (Cdc48 subfamily) M484_1599 PF10431 C-terminal, D2-small domain, of ClpB protein M484_1599 PF00004 ATPase family associated with various cellular activities (AAA) M484_16 PF03772 Competence protein M484_16 PF00753 Metallo-beta-lactamase superfamily M484_160 PF02557 D-alanyl-D-alanine carboxypeptidase M484_161 PF07687 Peptidase dimerisation domain M484_161 PF01546 Peptidase family M20/M25/M40 M484_1618 PF12848 ABC transporter M484_1618 PF00005 ABC transporter M484_162 PF03960 ArsC family M484_1620 PF00899 ThiF family M484_1621 PF03453 MoeA N-terminal region (domain I and II) M484_1621 PF00994 Probable molybdopterin binding domain M484_1621 PF03454 MoeA C-terminal region (domain IV) M484_1623 PF00005 ABC transporter M484_1624 PF13533 Biotin-lipoyl like M484_1627 PF00756 Putative esterase M484_1628 PF00107 Zinc-binding dehydrogenase M484_1628 PF08240 Alcohol dehydrogenase GroES-like domain M484_1629 PF03466 LysR substrate binding domain M484_1629 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M484_1630 PF06779 Uncharacterised MFS-type transporter YbfB M484_1631 PF01227 GTP cyclohydrolase I M484_1632 PF04235 Protein of unknown function (DUF418) M484_1633 PF13407 Periplasmic binding protein domain M484_1634 PF00005 ABC transporter M484_1635 PF02653 Branched-chain amino acid transport system / permease component M484_1636 PF01695 IstB-like ATP binding protein M484_1637 PF00665 Integrase core domain M484_1637 PF02796 Helix-turn-helix domain of resolvase M484_1638 PF01797 Transposase IS200 like M484_1639 PF00884 Sulfatase M484_1640 PF00455 DeoR C terminal sensor domain M484_1640 PF08220 DeoR-like helix-turn-helix domain M484_1641 PF08013 Tagatose 6 phosphate kinase M484_1642 PF01380 SIS domain M484_1643 PF03830 PTS system sorbose subfamily IIB component M484_1644 PF03609 PTS system sorbose-specific iic component M484_1645 PF03613 PTS system mannose/fructose/sorbose family IID component M484_1646 PF03610 PTS system fructose IIA component M484_1647 PF01979 Amidohydrolase family M484_165 PF00528 Binding-protein-dependent transport system inner membrane component M484_1650 PF13186 Iron-sulfur cluster-binding domain M484_1650 PF04055 Radical SAM superfamily M484_1651 PF00884 Sulfatase M484_1653 PF01116 Fructose-bisphosphate aldolase class-II M484_1656 PF00356 Bacterial regulatory proteins, lacI family M484_1657 PF07690 Major Facilitator Superfamily M484_1658 PF16338 Domain of unknown function (DUF4968) M484_1658 PF13802 Galactose mutarotase-like M484_1658 PF17137 Domain of unknown function (DUF5110) M484_1658 PF01055 Glycosyl hydrolases family 31 M484_1659 PF00356 Bacterial regulatory proteins, lacI family M484_166 PF00005 ABC transporter M484_166 PF08402 TOBE domain M484_1660 PF02264 LamB porin M484_1661 PF02378 Phosphotransferase system, EIIC M484_1661 PF00367 phosphotransferase system, EIIB M484_1662 PF08533 Beta-galactosidase C-terminal domain M484_1662 PF08532 Beta-galactosidase trimerisation domain M484_1662 PF02449 Beta-galactosidase M484_1663 PF08533 Beta-galactosidase C-terminal domain M484_1663 PF02449 Beta-galactosidase M484_1663 PF08532 Beta-galactosidase trimerisation domain M484_1664 PF07745 Glycosyl hydrolase family 53 M484_1665 PF00528 Binding-protein-dependent transport system inner membrane component M484_1666 PF00528 Binding-protein-dependent transport system inner membrane component M484_1667 PF13416 Bacterial extracellular solute-binding protein M484_1668 PF17912 MalK OB fold domain M484_1668 PF00005 ABC transporter M484_1669 PF00005 ABC transporter M484_167 PF00884 Sulfatase M484_1670 PF02653 Branched-chain amino acid transport system / permease component M484_1671 PF13407 Periplasmic binding protein domain M484_1673 PF05708 Permuted papain-like amidase enzyme, YaeF/YiiX, C92 family M484_1674 PF03551 Transcriptional regulator PadR-like family M484_168 PF04055 Radical SAM superfamily M484_168 PF13186 Iron-sulfur cluster-binding domain M484_169 PF04307 LexA-binding, inner membrane-associated putative hydrolase M484_1691 PF15731 Antitoxin component of bacterial toxin-antitoxin system, MqsA M484_1692 PF15723 Motility quorum-sensing regulator, toxin of MqsA M484_1696 PF14659 Phage integrase, N-terminal SAM-like domain M484_1696 PF00589 Phage integrase family M484_1696 PF13356 Arm DNA-binding domain M484_1698 PF00152 tRNA synthetases class II (D, K and N) M484_1698 PF01336 OB-fold nucleic acid binding domain M484_1699 PF00472 RF-1 domain M484_1699 PF03462 PCRF domain M484_17 PF00664 ABC transporter transmembrane region M484_17 PF00005 ABC transporter M484_1700 PF01368 DHH family M484_1700 PF02272 DHHA1 domain M484_1700 PF17768 RecJ OB domain M484_1701 PF13098 Thioredoxin-like domain M484_1701 PF10411 Disulfide bond isomerase protein N-terminus M484_1702 PF00589 Phage integrase family M484_1702 PF02899 Phage integrase, N-terminal SAM-like domain M484_1703 PF00258 Flavodoxin M484_1704 PF06123 Inner membrane protein CreD M484_1705 PF00672 HAMP domain M484_1705 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M484_1705 PF00512 His Kinase A (phospho-acceptor) domain M484_1706 PF00486 Transcriptional regulatory protein, C terminal M484_1706 PF00072 Response regulator receiver domain M484_1707 PF03937 Flavinator of succinate dehydrogenase M484_1708 PF01571 Aminomethyltransferase folate-binding domain M484_171 PF00873 AcrB/AcrD/AcrF family M484_1710 PF03006 Haemolysin-III related M484_1712 PF03895 YadA-like membrane anchor domain M484_1712 PF13018 Extended Signal Peptide of Type V secretion system M484_1712 PF05658 Head domain of trimeric autotransporter adhesin M484_1712 PF05662 Coiled stalk of trimeric autotransporter adhesin M484_1715 PF02347 Glycine cleavage system P-protein M484_1716 PF01597 Glycine cleavage H-protein M484_1717 PF01571 Aminomethyltransferase folate-binding domain M484_1717 PF08669 Glycine cleavage T-protein C-terminal barrel domain M484_1718 PF01494 FAD binding domain M484_1719 PF01494 FAD binding domain M484_1720 PF00557 Metallopeptidase family M24 M484_1720 PF05195 Aminopeptidase P, N-terminal domain M484_1721 PF03695 Uncharacterised protein family (UPF0149) M484_1722 PF05164 Cell division protein ZapA M484_1723 PF01812 5-formyltetrahydrofolate cyclo-ligase family M484_1724 PF01797 Transposase IS200 like M484_1725 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain M484_1725 PF01842 ACT domain M484_1725 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain M484_1726 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) M484_1727 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M484_1727 PF03466 LysR substrate binding domain M484_1728 PF04402 Protein of unknown function (DUF541) M484_1729 PF01810 LysE type translocator M484_173 PF00196 Bacterial regulatory proteins, luxR family M484_173 PF00072 Response regulator receiver domain M484_1730 PF05552 Conserved TM helix M484_1730 PF00924 Mechanosensitive ion channel M484_1731 PF01116 Fructose-bisphosphate aldolase class-II M484_1732 PF00162 Phosphoglycerate kinase M484_1733 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain M484_1733 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain M484_1734 PF01797 Transposase IS200 like M484_1735 PF02780 Transketolase, C-terminal domain M484_1735 PF00456 Transketolase, thiamine diphosphate binding domain M484_1735 PF02779 Transketolase, pyrimidine binding domain M484_1736 PF01435 Peptidase family M48 M484_1738 PF17810 Arginine decarboxylase helical bundle domain M484_1738 PF17944 Arginine decarboxylase C-terminal helical extension M484_1738 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain M484_174 PF13187 4Fe-4S dicluster domain M484_174 PF00037 4Fe-4S binding domain M484_174 PF12800 4Fe-4S binding domain M484_1740 PF00438 S-adenosylmethionine synthetase, N-terminal domain M484_1740 PF02772 S-adenosylmethionine synthetase, central domain M484_1740 PF02773 S-adenosylmethionine synthetase, C-terminal domain M484_1741 PF17283 SprT-like zinc ribbon domain M484_1741 PF10263 SprT-like family M484_1742 PF04231 Endonuclease I M484_1743 PF04452 RNA methyltransferase M484_1744 PF02951 Prokaryotic glutathione synthetase, N-terminal domain M484_1744 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain M484_1745 PF02622 Uncharacterized ACR, COG1678 M484_1746 PF03652 Holliday junction resolvase M484_1747 PF00795 Carbon-nitrogen hydrolase M484_1748 PF04371 Porphyromonas-type peptidyl-arginine deiminase M484_1749 PF00437 Type II/IV secretion system protein M484_175 PF03927 NapD protein M484_1750 PF01168 Alanine racemase, N-terminal domain M484_1751 PF03807 NADP oxidoreductase coenzyme F420-dependent M484_1751 PF14748 Pyrroline-5-carboxylate reductase dimerisation M484_1752 PF02325 YGGT family M484_1753 PF02594 Uncharacterised ACR, YggU family COG1872 M484_1754 PF01725 Ham1 family M484_1755 PF04055 Radical SAM superfamily M484_1755 PF06969 HemN C-terminal domain M484_1756 PF12146 Serine aminopeptidase, S33 M484_1756 PF16671 Actin cross-linking domain M484_1756 PF11647 Membrane Localization Domain M484_1756 PF11713 Peptidase C80 family M484_1756 PF07634 RtxA repeat M484_1757 PF11101 Protein of unknown function (DUF2884) M484_1758 PF11101 Protein of unknown function (DUF2884) M484_1759 PF04960 Glutaminase M484_176 PF01568 Molydopterin dinucleotide binding domain M484_176 PF04879 Molybdopterin oxidoreductase Fe4S4 domain M484_176 PF00384 Molybdopterin oxidoreductase M484_176 PF10518 TAT (twin-arginine translocation) pathway signal sequence M484_1760 PF04320 Protein with unknown function (DUF469) M484_1761 PF02390 Putative methyltransferase M484_1762 PF00633 Helix-hairpin-helix motif M484_1762 PF10576 Iron-sulfur binding domain of endonuclease III M484_1762 PF14815 NUDIX domain M484_1762 PF00730 HhH-GPD superfamily base excision DNA repair protein M484_1763 PF04362 Bacterial Fe(2+) trafficking M484_1764 PF01464 Transglycosylase SLT domain M484_1764 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain M484_1766 PF07715 TonB-dependent Receptor Plug Domain M484_1767 PF02653 Branched-chain amino acid transport system / permease component M484_1768 PF00005 ABC transporter M484_1769 PF13407 Periplasmic binding protein domain M484_177 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) M484_1770 PF01276 Orn/Lys/Arg decarboxylase, major domain M484_1770 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain M484_1770 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain M484_1772 PF00589 Phage integrase family M484_1772 PF02899 Phage integrase, N-terminal SAM-like domain M484_1774 PF03400 IS1 transposase M484_1775 PF12759 InsA C-terminal domain M484_1775 PF03811 InsA N-terminal domain M484_1779 PF07724 AAA domain (Cdc48 subfamily) M484_1779 PF00004 ATPase family associated with various cellular activities (AAA) M484_1779 PF10431 C-terminal, D2-small domain, of ClpB protein M484_1779 PF17871 AAA lid domain M484_178 PF03264 NapC/NirT cytochrome c family, N-terminal region M484_1781 PF05736 OprF membrane domain M484_1781 PF00691 OmpA family M484_1788 PF03811 InsA N-terminal domain M484_1788 PF12759 InsA C-terminal domain M484_179 PF00293 NUDIX domain M484_1790 PF02517 CPBP intramembrane metalloprotease M484_1792 PF00196 Bacterial regulatory proteins, luxR family M484_1792 PF03472 Autoinducer binding domain M484_1793 PF00765 Autoinducer synthase M484_1797 PF04183 IucA / IucC family M484_1797 PF06276 Ferric iron reductase FhuF-like transporter M484_1798 PF06276 Ferric iron reductase FhuF-like transporter M484_1798 PF04183 IucA / IucC family M484_18 PF02606 Tetraacyldisaccharide-1-P 4'-kinase M484_180 PF01515 Phosphate acetyl/butaryl transferase M484_180 PF03949 Malic enzyme, NAD binding domain M484_180 PF00390 Malic enzyme, N-terminal domain M484_1800 PF06276 Ferric iron reductase FhuF-like transporter M484_1800 PF04183 IucA / IucC family M484_1801 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) M484_1802 PF00593 TonB dependent receptor M484_1802 PF07715 TonB-dependent Receptor Plug Domain M484_1804 PF13276 HTH-like domain M484_1804 PF00665 Integrase core domain M484_1804 PF13333 Integrase core domain M484_1806 PF05433 Glycine zipper 2TM domain M484_181 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 M484_1810 PF00691 OmpA family M484_1810 PF13677 Membrane MotB of proton-channel complex MotA/MotB M484_1811 PF01618 MotA/TolQ/ExbB proton channel family M484_1812 PF04542 Sigma-70 region 2 M484_1812 PF04545 Sigma-70, region 4 M484_1817 PF07196 Flagellin hook IN motif M484_1817 PF02465 Flagellar hook-associated protein 2 N-terminus M484_1817 PF07195 Flagellar hook-associated protein 2 C-terminus M484_1818 PF00669 Bacterial flagellin N-terminal helical region M484_1818 PF00700 Bacterial flagellin C-terminal helical region M484_1819 PF00669 Bacterial flagellin N-terminal helical region M484_1819 PF00700 Bacterial flagellin C-terminal helical region M484_182 PF01218 Coproporphyrinogen III oxidase M484_1820 PF00700 Bacterial flagellin C-terminal helical region M484_1820 PF00669 Bacterial flagellin N-terminal helical region M484_1821 PF00700 Bacterial flagellin C-terminal helical region M484_1821 PF00669 Bacterial flagellin N-terminal helical region M484_1822 PF18500 CadC C-terminal domain 1 M484_1822 PF00486 Transcriptional regulatory protein, C terminal M484_1826 PF00460 Flagella basal body rod protein M484_1826 PF06429 Flagellar basal body rod FlgEFG protein C-terminal M484_1828 PF02119 Flagellar P-ring protein M484_1829 PF02107 Flagellar L-ring protein M484_183 PF00583 Acetyltransferase (GNAT) family M484_1830 PF06429 Flagellar basal body rod FlgEFG protein C-terminal M484_1830 PF00460 Flagella basal body rod protein M484_1831 PF06429 Flagellar basal body rod FlgEFG protein C-terminal M484_1831 PF00460 Flagella basal body rod protein M484_1832 PF07559 Flagellar basal body protein FlaE M484_1832 PF00460 Flagella basal body rod protein M484_1832 PF06429 Flagellar basal body rod FlgEFG protein C-terminal M484_1833 PF13861 FlgD Tudor-like domain M484_1833 PF13860 FlgD Ig-like domain M484_1833 PF03963 Flagellar hook capping protein - N-terminal region M484_1834 PF06429 Flagellar basal body rod FlgEFG protein C-terminal M484_1834 PF00460 Flagella basal body rod protein M484_1835 PF00460 Flagella basal body rod protein M484_1836 PF13144 Chaperone for flagella basal body P-ring formation M484_1840 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain M484_1840 PF18269 T3SS EscN ATPase C-terminal domain M484_1843 PF01514 Secretory protein of YscJ/FliF family M484_1843 PF08345 Flagellar M-ring protein C-terminal M484_1844 PF02049 Flagellar hook-basal body complex protein FliE M484_1845 PF00072 Response regulator receiver domain M484_1845 PF02954 Bacterial regulatory protein, Fis family M484_1845 PF00158 Sigma-54 interaction domain M484_1847 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term M484_1848 PF00813 FliP family M484_1849 PF01313 Bacterial export proteins, family 3 M484_185 PF13018 Extended Signal Peptide of Type V secretion system M484_185 PF03797 Autotransporter beta-domain M484_185 PF16168 Adhesin of bacterial autotransporter system, probable stalk M484_185 PF03212 Pertactin M484_1850 PF01311 Bacterial export proteins, family 1 M484_1851 PF01312 FlhB HrpN YscU SpaS Family M484_1852 PF00771 FHIPEP family M484_1855 PF01497 Periplasmic binding protein M484_1856 PF09222 Fimbrial adhesin F17-AG, lectin domain M484_1856 PF00419 Fimbrial protein M484_1858 PF02753 Pili assembly chaperone PapD, C-terminal domain M484_1858 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain M484_1859 PF13954 PapC N-terminal domain M484_1859 PF00577 Outer membrane usher protein M484_1859 PF13953 PapC C-terminal domain M484_186 PF04076 Bacterial OB fold (BOF) protein M484_1860 PF01797 Transposase IS200 like M484_1863 PF13629 Pilus formation protein N terminal region M484_1863 PF04972 BON domain M484_1863 PF00263 Bacterial type II and III secretion system protein M484_1864 PF13629 Pilus formation protein N terminal region M484_1864 PF04972 BON domain M484_1864 PF00263 Bacterial type II and III secretion system protein M484_1867 PF00437 Type II/IV secretion system protein M484_1874 PF02472 Biopolymer transport protein ExbD/TolR M484_1876 PF01618 MotA/TolQ/ExbB proton channel family M484_1877 PF01053 Cys/Met metabolism PLP-dependent enzyme M484_1878 PF09335 SNARE associated Golgi protein M484_1879 PF12833 Helix-turn-helix domain M484_1879 PF06719 AraC-type transcriptional regulator N-terminus M484_188 PF06572 Protein of unknown function (DUF1131) M484_1880 PF00465 Iron-containing alcohol dehydrogenase M484_1881 PF00248 Aldo/keto reductase family M484_1882 PF08497 Radical SAM N-terminal M484_1882 PF11842 Domain of unknown function (DUF3362) M484_1882 PF04055 Radical SAM superfamily M484_1883 PF11842 Domain of unknown function (DUF3362) M484_1883 PF04055 Radical SAM superfamily M484_1883 PF08497 Radical SAM N-terminal M484_1884 PF07732 Multicopper oxidase M484_1884 PF07731 Multicopper oxidase M484_1885 PF01553 Acyltransferase M484_1886 PF03989 DNA gyrase C-terminal domain, beta-propeller M484_1886 PF00521 DNA gyrase/topoisomerase IV, subunit A M484_1887 PF02525 Flavodoxin-like fold M484_1888 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M484_1888 PF03466 LysR substrate binding domain M484_1889 PF00986 DNA gyrase B subunit, carboxyl terminus M484_1889 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M484_1889 PF01751 Toprim domain M484_1889 PF00204 DNA gyrase B M484_189 PF04261 Dyp-type peroxidase family M484_1890 PF05728 Uncharacterised protein family (UPF0227) M484_1891 PF00149 Calcineurin-like phosphoesterase M484_1892 PF06853 Protein of unknown function (DUF1249) M484_1893 PF00293 NUDIX domain M484_1894 PF02321 Outer membrane efflux protein M484_1896 PF06693 Protein of unknown function (DUF1190) M484_1897 PF03738 Glutathionylspermidine synthase preATP-grasp M484_1898 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase M484_1899 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase M484_19 PF07063 Domain of unknown function (DUF1338) M484_190 PF00701 Dihydrodipicolinate synthetase family M484_1901 PF04380 Membrane fusogenic activity M484_1902 PF13520 Amino acid permease M484_1903 PF01467 Cytidylyltransferase-like M484_1903 PF00294 pfkB family carbohydrate kinase M484_1904 PF08335 GlnD PII-uridylyltransferase M484_1904 PF03710 Glutamate-ammonia ligase adenylyltransferase M484_1905 PF01928 CYTH domain M484_1906 PF08239 Bacterial SH3 domain M484_1907 PF01966 HD domain M484_1907 PF01743 Poly A polymerase head domain M484_1907 PF12627 Probable RNA and SrmB- binding site of polymerase A M484_1908 PF02673 Bacitracin resistance protein BacA M484_1909 PF02152 Dihydroneopterin aldolase M484_191 PF04131 Putative N-acetylmannosamine-6-phosphate epimerase M484_1910 PF02660 Glycerol-3-phosphate acyltransferase M484_1911 PF00814 Glycoprotease family M484_1912 PF01165 Ribosomal protein S21 M484_1913 PF01807 CHC2 zinc finger M484_1913 PF08275 DNA primase catalytic core, N-terminal domain M484_1913 PF08278 DNA primase DnaG DnaB-binding M484_1913 PF10410 DnaB-helicase binding domain of primase M484_1914 PF03979 Sigma-70 factor, region 1.1 M484_1914 PF00140 Sigma-70 factor, region 1.2 M484_1914 PF04542 Sigma-70 region 2 M484_1914 PF04539 Sigma-70 region 3 M484_1914 PF04545 Sigma-70, region 4 M484_1914 PF04546 Sigma-70, non-essential region M484_192 PF12468 Type III secretion system leucine rich repeat protein M484_1925 PF02796 Helix-turn-helix domain of resolvase M484_1925 PF00665 Integrase core domain M484_1926 PF02796 Helix-turn-helix domain of resolvase M484_1926 PF00665 Integrase core domain M484_1927 PF01695 IstB-like ATP binding protein M484_1928 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M484_1928 PF03466 LysR substrate binding domain M484_193 PF00480 ROK family M484_1932 PF01042 Endoribonuclease L-PSP M484_1939 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion M484_1939 PF00529 HlyD membrane-fusion protein of T1SS M484_194 PF04074 YhcH/YjgK/YiaL M484_1940 PF04632 Fusaric acid resistance protein family M484_1942 PF00933 Glycosyl hydrolase family 3 N terminal domain M484_1942 PF14310 Fibronectin type III-like domain M484_1942 PF01915 Glycosyl hydrolase family 3 C-terminal domain M484_1944 PF00528 Binding-protein-dependent transport system inner membrane component M484_1945 PF00528 Binding-protein-dependent transport system inner membrane component M484_1946 PF13416 Bacterial extracellular solute-binding protein M484_1947 PF00356 Bacterial regulatory proteins, lacI family M484_1948 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain M484_1949 PF00005 ABC transporter M484_1949 PF03459 TOBE domain M484_1949 PF17912 MalK OB fold domain M484_195 PF01418 Helix-turn-helix domain, rpiR family M484_195 PF01380 SIS domain M484_1953 PF13018 Extended Signal Peptide of Type V secretion system M484_1953 PF04829 Pre-toxin domain with VENN motif M484_1953 PF05860 haemagglutination activity domain M484_1953 PF13332 Hemagglutinin repeat M484_1955 PF04829 Pre-toxin domain with VENN motif M484_1955 PF05860 haemagglutination activity domain M484_1955 PF13332 Hemagglutinin repeat M484_1955 PF13018 Extended Signal Peptide of Type V secretion system M484_1957 PF04829 Pre-toxin domain with VENN motif M484_1957 PF13018 Extended Signal Peptide of Type V secretion system M484_1957 PF13332 Hemagglutinin repeat M484_1957 PF05860 haemagglutination activity domain M484_1958 PF08479 POTRA domain, ShlB-type M484_1958 PF17287 POTRA domain M484_1958 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB M484_1959 PF00092 von Willebrand factor type A domain M484_196 PF07690 Major Facilitator Superfamily M484_1960 PF02342 TerD domain M484_1962 PF00092 von Willebrand factor type A domain M484_1965 PF03729 Short repeat of unknown function (DUF308) M484_1966 PF00724 NADH:flavin oxidoreductase / NADH oxidase family M484_1966 PF07992 Pyridine nucleotide-disulphide oxidoreductase M484_1967 PF05175 Methyltransferase small domain M484_1968 PF03797 Autotransporter beta-domain M484_1969 PF01863 Protein of unknown function DUF45 M484_1970 PF01408 Oxidoreductase family, NAD-binding Rossmann fold M484_1971 PF00375 Sodium:dicarboxylate symporter family M484_1973 PF01797 Transposase IS200 like M484_1974 PF10688 Bacterial inner membrane protein M484_1975 PF08666 SAF domain M484_1975 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus M484_1976 PF08125 Mannitol dehydrogenase C-terminal domain M484_1976 PF01232 Mannitol dehydrogenase Rossmann domain M484_1977 PF02614 Glucuronate isomerase M484_1978 PF07690 Major Facilitator Superfamily M484_1979 PF07690 Major Facilitator Superfamily M484_198 PF00528 Binding-protein-dependent transport system inner membrane component M484_1980 PF07729 FCD domain M484_1980 PF00392 Bacterial regulatory proteins, gntR family M484_1982 PF09335 SNARE associated Golgi protein M484_1983 PF13721 SecD export protein N-terminal TM region M484_1985 PF05957 Bacterial protein of unknown function (DUF883) M484_1986 PF07332 Putative Actinobacterial Holin-X, holin superfamily III M484_1988 PF07681 DoxX M484_1989 PF13409 Glutathione S-transferase, N-terminal domain M484_199 PF00528 Binding-protein-dependent transport system inner membrane component M484_1990 PF03466 LysR substrate binding domain M484_1990 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M484_1991 PF02678 Pirin M484_1991 PF17954 Quercetinase C-terminal cupin domain M484_1992 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases M484_1993 PF04348 LppC putative lipoprotein M484_1994 PF02021 Uncharacterised protein family UPF0102 M484_1995 PF13580 SIS domain M484_1996 PF04972 BON domain M484_1997 PF00912 Transglycosylase M484_1999 PF00989 PAS fold M484_1999 PF00072 Response regulator receiver domain M484_1999 PF18415 Histidine kinase receptor ArcB trans-membrane domain M484_1999 PF00512 His Kinase A (phospho-acceptor) domain M484_1999 PF01627 Hpt domain M484_1999 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M484_2 PF04055 Radical SAM superfamily M484_20 PF00313 'Cold-shock' DNA-binding domain M484_200 PF00005 ABC transporter M484_2000 PF04055 Radical SAM superfamily M484_2000 PF16199 Radical_SAM C-terminal domain M484_2001 PF01645 Conserved region in glutamate synthase M484_2001 PF04898 Glutamate synthase central domain M484_2001 PF00310 Glutamine amidotransferases class-II M484_2001 PF01493 GXGXG motif M484_2002 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster M484_2002 PF07992 Pyridine nucleotide-disulphide oxidoreductase M484_2004 PF04386 Stringent starvation protein B M484_2005 PF00043 Glutathione S-transferase, C-terminal domain M484_2005 PF02798 Glutathione S-transferase, N-terminal domain M484_2006 PF00380 Ribosomal protein S9/S16 M484_2007 PF00572 Ribosomal protein L13 M484_2008 PF03969 AFG1-like ATPase M484_2009 PF06295 Protein of unknown function (DUF1043) M484_201 PF00291 Pyridoxal-phosphate dependent enzyme M484_2010 PF13180 PDZ domain M484_2010 PF00595 PDZ domain M484_2011 PF01797 Transposase IS200 like M484_2012 PF13180 PDZ domain M484_2013 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) M484_2014 PF01722 BolA-like protein M484_2015 PF13466 STAS domain M484_2016 PF05494 MlaC protein M484_2017 PF02470 MlaD protein M484_2018 PF02405 Permease MlaE M484_2019 PF00005 ABC transporter M484_2020 PF01699 Sodium/calcium exchanger protein M484_2021 PF01380 SIS domain M484_2021 PF00571 CBS domain M484_2023 PF06835 Lipopolysaccharide-assembly, LptC-related M484_2024 PF03968 OstA-like protein M484_2025 PF00005 ABC transporter M484_2025 PF12399 Branched-chain amino acid ATP-binding cassette transporter M484_2026 PF04963 Sigma-54 factor, core binding domain M484_2026 PF00309 Sigma-54 factor, Activator interacting domain (AID) M484_2026 PF04552 Sigma-54, DNA binding domain M484_2027 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein M484_2028 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 M484_2029 PF03668 P-loop ATPase protein family M484_203 PF00486 Transcriptional regulatory protein, C terminal M484_203 PF00072 Response regulator receiver domain M484_2030 PF00381 PTS HPr component phosphorylation site M484_2031 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain M484_2031 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain M484_2032 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain M484_2032 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain M484_2033 PF01042 Endoribonuclease L-PSP M484_2035 PF00356 Bacterial regulatory proteins, lacI family M484_2036 PF02378 Phosphotransferase system, EIIC M484_2036 PF00367 phosphotransferase system, EIIB M484_2037 PF11941 Domain of unknown function (DUF3459) M484_2037 PF00128 Alpha amylase, catalytic domain M484_2038 PF14760 Rnk N-terminus M484_2038 PF01272 Transcription elongation factor, GreA/GreB, C-term M484_2039 PF07361 Cytochrome b562 M484_204 PF00512 His Kinase A (phospho-acceptor) domain M484_204 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M484_204 PF00672 HAMP domain M484_2041 PF01523 Putative modulator of DNA gyrase M484_2042 PF04751 Protein of unknown function (DUF615) M484_2043 PF01337 Barstar (barnase inhibitor) M484_2045 PF00171 Aldehyde dehydrogenase family M484_2046 PF00171 Aldehyde dehydrogenase family M484_2047 PF04632 Fusaric acid resistance protein family M484_2048 PF13533 Biotin-lipoyl like M484_2049 PF07869 Protein of unknown function (DUF1656) M484_2050 PF03466 LysR substrate binding domain M484_2050 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M484_2051 PF03466 LysR substrate binding domain M484_2051 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M484_2053 PF18413 Neuraminidase-like domain M484_2053 PF18276 Tc toxin complex TcA C-terminal TcB-binding domain M484_2054 PF12255 Insecticide toxin TcdB middle/C-terminal region M484_2054 PF12256 Insecticide toxin TcdB middle/N-terminal region M484_2054 PF03534 Salmonella virulence plasmid 65kDa B protein M484_2058 PF18807 Tripartite Tc toxins repeat M484_2058 PF05785 Rho-activating domain of cytotoxic necrotizing factor M484_2059 PF18807 Tripartite Tc toxins repeat M484_2059 PF14431 YwqJ-like deaminase M484_206 PF00155 Aminotransferase class I and II M484_2060 PF01523 Putative modulator of DNA gyrase M484_2061 PF00795 Carbon-nitrogen hydrolase M484_2062 PF13502 AsmA-like C-terminal region M484_2062 PF13116 Protein of unknown function M484_2063 PF10150 Ribonuclease E/G family M484_2063 PF00575 S1 RNA binding domain M484_2064 PF02545 Maf-like protein M484_2065 PF04093 rod shape-determining protein MreD M484_2066 PF04085 rod shape-determining protein MreC M484_2068 PF00563 EAL domain M484_2068 PF17157 Gammaproteobacterial periplasmic sensor domain M484_2068 PF00990 Diguanylate cyclase, GGDEF domain M484_2069 PF00107 Zinc-binding dehydrogenase M484_2069 PF08240 Alcohol dehydrogenase GroES-like domain M484_2070 PF00174 Oxidoreductase molybdopterin binding domain M484_2071 PF01794 Ferric reductase like transmembrane component M484_2072 PF01220 Dehydroquinase class II M484_2073 PF00364 Biotin-requiring enzyme M484_2074 PF00289 Biotin carboxylase, N-terminal domain M484_2074 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain M484_2074 PF02785 Biotin carboxylase C-terminal domain M484_2076 PF06196 Protein of unknown function (DUF997) M484_2077 PF00474 Sodium:solute symporter family M484_2079 PF01207 Dihydrouridine synthase (Dus) M484_208 PF05195 Aminopeptidase P, N-terminal domain M484_208 PF00557 Metallopeptidase family M24 M484_2080 PF02954 Bacterial regulatory protein, Fis family M484_2083 PF07690 Major Facilitator Superfamily M484_2084 PF02627 Carboxymuconolactone decarboxylase family M484_2085 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase M484_2085 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase M484_2086 PF00753 Metallo-beta-lactamase superfamily M484_2087 PF05433 Glycine zipper 2TM domain M484_2088 PF00313 'Cold-shock' DNA-binding domain M484_2089 PF00313 'Cold-shock' DNA-binding domain M484_2090 PF01797 Transposase IS200 like M484_2093 PF02798 Glutathione S-transferase, N-terminal domain M484_2094 PF01380 SIS domain M484_2094 PF00571 CBS domain M484_2095 PF00370 FGGY family of carbohydrate kinases, N-terminal domain M484_2095 PF02782 FGGY family of carbohydrate kinases, C-terminal domain M484_2097 PF02653 Branched-chain amino acid transport system / permease component M484_2098 PF00005 ABC transporter M484_21 PF03966 Trm112p-like protein M484_210 PF00474 Sodium:solute symporter family M484_2100 PF03279 Bacterial lipid A biosynthesis acyltransferase M484_2102 PF00999 Sodium/hydrogen exchanger family M484_2103 PF00860 Permease family M484_2104 PF04221 RelB antitoxin M484_2105 PF00005 ABC transporter M484_2106 PF00528 Binding-protein-dependent transport system inner membrane component M484_2107 PF00296 Luciferase-like monooxygenase M484_2108 PF09084 NMT1/THI5 like M484_2109 PF03358 NADPH-dependent FMN reductase M484_211 PF07992 Pyridine nucleotide-disulphide oxidoreductase M484_211 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain M484_2111 PF00294 pfkB family carbohydrate kinase M484_2112 PF05025 RbsD / FucU transport protein family M484_2113 PF02311 AraC-like ligand binding domain M484_2113 PF12833 Helix-turn-helix domain M484_2114 PF02894 Oxidoreductase family, C-terminal alpha/beta domain M484_2114 PF01408 Oxidoreductase family, NAD-binding Rossmann fold M484_2117 PF05593 RHS Repeat M484_2117 PF03527 RHS protein M484_2119 PF04717 Type VI secretion system, phage-baseplate injector M484_212 PF00005 ABC transporter M484_212 PF12704 MacB-like periplasmic core domain M484_212 PF02687 FtsX-like permease family M484_2125 PF14220 Domain of unknown function (DUF4329) M484_2125 PF05593 RHS Repeat M484_2125 PF03527 RHS protein M484_2128 PF04717 Type VI secretion system, phage-baseplate injector M484_213 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion M484_2135 PF07724 AAA domain (Cdc48 subfamily) M484_2135 PF00004 ATPase family associated with various cellular activities (AAA) M484_2135 PF10431 C-terminal, D2-small domain, of ClpB protein M484_2135 PF17871 AAA lid domain M484_214 PF00072 Response regulator receiver domain M484_214 PF00486 Transcriptional regulatory protein, C terminal M484_2144 PF13276 HTH-like domain M484_2144 PF00665 Integrase core domain M484_2144 PF13333 Integrase core domain M484_2148 PF05638 Type VI secretion system effector, Hcp M484_215 PF00512 His Kinase A (phospho-acceptor) domain M484_215 PF16527 Two-component sensor protein CpxA, periplasmic domain M484_215 PF00672 HAMP domain M484_215 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M484_2150 PF07148 Maltose operon periplasmic protein precursor (MalM) M484_2151 PF02264 LamB porin M484_2152 PF17912 MalK OB fold domain M484_2152 PF00005 ABC transporter M484_2154 PF01547 Bacterial extracellular solute-binding protein M484_2155 PF00528 Binding-protein-dependent transport system inner membrane component M484_2155 PF14785 Maltose transport system permease protein MalF P2 domain M484_2156 PF00528 Binding-protein-dependent transport system inner membrane component M484_2157 PF06146 Phosphate-starvation-inducible E M484_2158 PF00342 Phosphoglucose isomerase M484_2159 PF00696 Amino acid kinase family M484_2159 PF01842 ACT domain M484_2160 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB M484_2160 PF17287 POTRA domain M484_2160 PF08479 POTRA domain, ShlB-type M484_2161 PF05860 haemagglutination activity domain M484_2161 PF13332 Hemagglutinin repeat M484_2162 PF13332 Hemagglutinin repeat M484_2162 PF05860 haemagglutination activity domain M484_2163 PF02607 B12 binding domain M484_2163 PF02965 Vitamin B12 dependent methionine synthase, activation domain M484_2163 PF02310 B12 binding domain M484_2163 PF02574 Homocysteine S-methyltransferase M484_2163 PF00809 Pterin binding enzyme M484_2164 PF01614 Bacterial transcriptional regulator M484_2164 PF09339 IclR helix-turn-helix domain M484_2165 PF06315 Isocitrate dehydrogenase kinase/phosphatase (AceK) M484_2166 PF00463 Isocitrate lyase family M484_2167 PF01274 Malate synthase M484_2168 PF04204 Homoserine O-succinyltransferase M484_2178 PF17871 AAA lid domain M484_2178 PF02861 Clp amino terminal domain, pathogenicity island component M484_2178 PF00004 ATPase family associated with various cellular activities (AAA) M484_2178 PF10431 C-terminal, D2-small domain, of ClpB protein M484_2178 PF07724 AAA domain (Cdc48 subfamily) M484_218 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 M484_2180 PF00849 RNA pseudouridylate synthase M484_2180 PF01479 S4 domain M484_2181 PF13525 Outer membrane lipoprotein M484_2182 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein M484_2183 PF00800 Prephenate dehydratase M484_2183 PF01817 Chorismate mutase type II M484_2184 PF01817 Chorismate mutase type II M484_2184 PF02153 Prephenate dehydrogenase M484_2185 PF00793 DAHP synthetase I family M484_2186 PF01695 IstB-like ATP binding protein M484_2187 PF00665 Integrase core domain M484_2187 PF02796 Helix-turn-helix domain of resolvase M484_2188 PF00793 DAHP synthetase I family M484_2189 PF04397 LytTr DNA-binding domain M484_2189 PF00072 Response regulator receiver domain M484_219 PF00391 PEP-utilising enzyme, mobile domain M484_219 PF02896 PEP-utilising enzyme, TIM barrel domain M484_219 PF05524 PEP-utilising enzyme, N-terminal M484_2190 PF03605 Anaerobic c4-dicarboxylate membrane transporter M484_2191 PF03605 Anaerobic c4-dicarboxylate membrane transporter M484_2192 PF04338 Protein of unknown function, DUF481 M484_2193 PF01245 Ribosomal protein L19 M484_2194 PF01746 tRNA (Guanine-1)-methyltransferase M484_2195 PF01782 RimM N-terminal domain M484_2195 PF05239 PRC-barrel domain M484_2196 PF00886 Ribosomal protein S16 M484_2197 PF02881 SRP54-type protein, helical bundle domain M484_2197 PF02978 Signal peptide binding domain M484_2197 PF00448 SRP54-type protein, GTPase domain M484_2198 PF01578 Cytochrome C assembly protein M484_2199 PF01595 Cyclin M transmembrane N-terminal domain M484_2199 PF03471 Transporter associated domain M484_2199 PF00571 CBS domain M484_22 PF02348 Cytidylyltransferase M484_220 PF00381 PTS HPr component phosphorylation site M484_2200 PF02664 S-Ribosylhomocysteinase (LuxS) M484_2201 PF04262 Glutamate-cysteine ligase M484_2202 PF09335 SNARE associated Golgi protein M484_2203 PF13419 Haloacid dehalogenase-like hydrolase M484_2206 PF02599 Global regulator protein family M484_2207 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain M484_2207 PF01411 tRNA synthetases class II (A) M484_2207 PF02272 DHHA1 domain M484_2208 PF02631 RecX family M484_2209 PF00154 recA bacterial DNA recombination protein M484_221 PF00291 Pyridoxal-phosphate dependent enzyme M484_2210 PF02464 Competence-damaged protein M484_2211 PF07690 Major Facilitator Superfamily M484_2214 PF02782 FGGY family of carbohydrate kinases, C-terminal domain M484_2214 PF00370 FGGY family of carbohydrate kinases, N-terminal domain M484_2215 PF02779 Transketolase, pyrimidine binding domain M484_2215 PF02780 Transketolase, C-terminal domain M484_2216 PF00456 Transketolase, thiamine diphosphate binding domain M484_2217 PF02653 Branched-chain amino acid transport system / permease component M484_2218 PF00005 ABC transporter M484_2221 PF00141 Peroxidase M484_2222 PF07361 Cytochrome b562 M484_2223 PF01292 Prokaryotic cytochrome b561 M484_2224 PF02613 Nitrate reductase delta subunit M484_2225 PF04976 DMSO reductase anchor subunit (DmsC) M484_2226 PF13247 4Fe-4S dicluster domain M484_2226 PF12800 4Fe-4S binding domain M484_2227 PF00384 Molybdopterin oxidoreductase M484_2227 PF01568 Molydopterin dinucleotide binding domain M484_2227 PF04879 Molybdopterin oxidoreductase Fe4S4 domain M484_2228 PF00596 Class II Aldolase and Adducin N-terminal domain M484_2229 PF00455 DeoR C terminal sensor domain M484_2229 PF08220 DeoR-like helix-turn-helix domain M484_223 PF04354 ZipA, C-terminal FtsZ-binding domain M484_2231 PF00005 ABC transporter M484_2232 PF02653 Branched-chain amino acid transport system / permease component M484_2233 PF02653 Branched-chain amino acid transport system / permease component M484_2234 PF01261 Xylose isomerase-like TIM barrel M484_2235 PF00370 FGGY family of carbohydrate kinases, N-terminal domain M484_2235 PF02782 FGGY family of carbohydrate kinases, C-terminal domain M484_2236 PF05681 Fumarate hydratase (Fumerase) M484_2236 PF05683 Fumarase C-terminus M484_2238 PF00557 Metallopeptidase family M24 M484_224 PF12826 Helix-hairpin-helix motif M484_224 PF01653 NAD-dependent DNA ligase adenylation domain M484_224 PF00533 BRCA1 C Terminus (BRCT) domain M484_224 PF03119 NAD-dependent DNA ligase C4 zinc finger domain M484_224 PF03120 NAD-dependent DNA ligase OB-fold domain M484_2240 PF00593 TonB dependent receptor M484_2240 PF07715 TonB-dependent Receptor Plug Domain M484_2242 PF00034 Cytochrome c M484_2242 PF03150 Di-haem cytochrome c peroxidase M484_2242 PF14376 Haem-binding domain M484_2243 PF00497 Bacterial extracellular solute-binding proteins, family 3 M484_2246 PF01022 Bacterial regulatory protein, arsR family M484_2247 PF02040 Arsenical pump membrane protein M484_2248 PF04198 Putative sugar-binding domain M484_2248 PF13936 Helix-turn-helix domain M484_2249 PF02734 DAK2 domain M484_225 PF12843 Putative quorum-sensing-regulated virulence factor M484_2250 PF02733 Dak1 domain M484_2252 PF00107 Zinc-binding dehydrogenase M484_2252 PF08240 Alcohol dehydrogenase GroES-like domain M484_2253 PF02502 Ribose/Galactose Isomerase M484_2254 PF00488 MutS domain V M484_2254 PF05188 MutS domain II M484_2254 PF05192 MutS domain III M484_2254 PF05190 MutS family domain IV M484_2254 PF01624 MutS domain I M484_2255 PF04539 Sigma-70 region 3 M484_2255 PF00140 Sigma-70 factor, region 1.2 M484_2255 PF04542 Sigma-70 region 2 M484_2255 PF04545 Sigma-70, region 4 M484_2256 PF01551 Peptidase family M23 M484_2256 PF01476 LysM domain M484_2258 PF01975 Survival protein SurE M484_2259 PF01142 tRNA pseudouridine synthase D (TruD) M484_2260 PF02542 YgbB family M484_2261 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase M484_2262 PF04977 Septum formation initiator M484_2263 PF12084 Protein of unknown function (DUF3561) M484_2265 PF00009 Elongation factor Tu GTP binding domain M484_2266 PF01507 Phosphoadenosine phosphosulfate reductase family M484_2267 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases M484_2267 PF10414 Sirohaem synthase dimerisation region M484_2267 PF14824 Sirohaem biosynthesis protein central M484_2271 PF01507 Phosphoadenosine phosphosulfate reductase family M484_2272 PF01507 Phosphoadenosine phosphosulfate reductase family M484_2273 PF01077 Nitrite and sulphite reductase 4Fe-4S domain M484_2273 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain M484_2274 PF00175 Oxidoreductase NAD-binding domain M484_2274 PF00667 FAD binding domain M484_2274 PF00258 Flavodoxin M484_2275 PF01242 6-pyruvoyl tetrahydropterin synthase M484_2276 PF04055 Radical SAM superfamily M484_2277 PF00080 Copper/zinc superoxide dismutase (SODC) M484_2278 PF03952 Enolase, N-terminal domain M484_2278 PF00113 Enolase, C-terminal TIM barrel domain M484_2279 PF00117 Glutamine amidotransferase class-I M484_2279 PF06418 CTP synthase N-terminus M484_228 PF01797 Transposase IS200 like M484_2280 PF03819 MazG nucleotide pyrophosphohydrolase domain M484_2281 PF02824 TGS domain M484_2281 PF04607 Region found in RelA / SpoT proteins M484_2281 PF13291 ACT domain M484_2282 PF01627 Hpt domain M484_2282 PF00512 His Kinase A (phospho-acceptor) domain M484_2282 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M484_2282 PF00672 HAMP domain M484_2282 PF00072 Response regulator receiver domain M484_2282 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) M484_2283 PF00595 PDZ domain M484_2284 PF13286 Phosphohydrolase-associated domain M484_2284 PF01966 HD domain M484_2285 PF01048 Phosphorylase superfamily M484_2286 PF01497 Periplasmic binding protein M484_2287 PF03458 UPF0126 domain M484_2288 PF01521 Iron-sulphur cluster biosynthesis M484_2289 PF00654 Voltage gated chloride channel M484_2290 PF00202 Aminotransferase class-III M484_2291 PF01032 FecCD transport family M484_2292 PF01497 Periplasmic binding protein M484_2293 PF00005 ABC transporter M484_2294 PF14814 Bifunctional transglycosylase second domain M484_2294 PF14812 Transmembrane domain of transglycosylase PBP1 at N-terminal M484_2294 PF00912 Transglycosylase M484_2294 PF00905 Penicillin binding protein transpeptidase domain M484_2295 PF08482 ATP-dependent helicase C-terminal M484_2295 PF00271 Helicase conserved C-terminal domain M484_2295 PF00270 DEAD/DEAH box helicase M484_2295 PF04408 Helicase associated domain (HA2) M484_2296 PF02834 LigT like Phosphoesterase M484_2297 PF17746 SfsA N-terminal OB domain M484_2297 PF03749 Sugar fermentation stimulation protein RE domain M484_2298 PF01258 Prokaryotic dksA/traR C4-type zinc finger M484_2299 PF00749 tRNA synthetases class I (E and Q), catalytic domain M484_23 PF01636 Phosphotransferase enzyme family M484_230 PF00749 tRNA synthetases class I (E and Q), catalytic domain M484_2300 PF01743 Poly A polymerase head domain M484_2300 PF12626 Polymerase A arginine-rich C-terminus M484_2300 PF12627 Probable RNA and SrmB- binding site of polymerase A M484_2301 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) M484_2302 PF02548 Ketopantoate hydroxymethyltransferase M484_2303 PF02569 Pantoate-beta-alanine ligase M484_2304 PF02261 Aspartate decarboxylase M484_2305 PF01522 Polysaccharide deacetylase M484_2307 PF01061 ABC-2 type transporter M484_2308 PF00005 ABC transporter M484_2309 PF00484 Carbonic anhydrase M484_2310 PF00156 Phosphoribosyl transferase domain M484_2311 PF00394 Multicopper oxidase M484_2311 PF07731 Multicopper oxidase M484_2311 PF07732 Multicopper oxidase M484_2311 PF10518 TAT (twin-arginine translocation) pathway signal sequence M484_2312 PF09691 Type II secretion system pilotin lipoprotein (PulS_OutS) M484_2313 PF17284 Spermidine synthase tetramerisation domain M484_2314 PF02675 S-adenosylmethionine decarboxylase M484_2315 PF00892 EamA-like transporter family M484_2316 PF06062 Uncharacterised protein family (UPF0231) M484_2317 PF06434 Aconitate hydratase 2 N-terminus M484_2317 PF00330 Aconitase family (aconitate hydratase) M484_2317 PF11791 Aconitate B N-terminal domain M484_2318 PF01797 Transposase IS200 like M484_2319 PF07992 Pyridine nucleotide-disulphide oxidoreductase M484_2319 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain M484_2320 PF02817 e3 binding domain M484_2320 PF00364 Biotin-requiring enzyme M484_2320 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) M484_2321 PF17831 Pyruvate dehydrogenase E1 component middle domain M484_2321 PF00456 Transketolase, thiamine diphosphate binding domain M484_2322 PF07729 FCD domain M484_2322 PF00392 Bacterial regulatory proteins, gntR family M484_2323 PF00324 Amino acid permease M484_2324 PF17113 Regulatory signalling modulator protein AmpE M484_2325 PF01510 N-acetylmuramoyl-L-alanine amidase M484_2326 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain M484_2326 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain M484_2327 PF07963 Prokaryotic N-terminal methylation motif M484_2328 PF00437 Type II/IV secretion system protein M484_2328 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain M484_2329 PF00482 Type II secretion system (T2SS), protein F M484_2330 PF00478 IMP dehydrogenase / GMP reductase domain M484_2331 PF01121 Dephospho-CoA kinase M484_2332 PF07072 Cell division protein M484_2333 PF03884 DNA gyrase inhibitor YacG M484_2334 PF01797 Transposase IS200 like M484_2335 PF01695 IstB-like ATP binding protein M484_2336 PF00293 NUDIX domain M484_2337 PF01043 SecA preprotein cross-linking domain M484_2337 PF07517 SecA DEAD-like domain M484_2337 PF02810 SEC-C motif M484_2337 PF07516 SecA Wing and Scaffold domain M484_2338 PF06558 Secretion monitor precursor protein (SecM) M484_2340 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase M484_2341 PF00091 Tubulin/FtsZ family, GTPase domain M484_2341 PF12327 FtsZ family, C-terminal domain M484_2342 PF02491 SHS2 domain inserted in FTSA M484_2343 PF03799 Cell division protein FtsQ M484_2343 PF08478 POTRA domain, FtsQ-type M484_2344 PF01820 D-ala D-ala ligase N-terminus M484_2344 PF07478 D-ala D-ala ligase C-terminus M484_2345 PF02875 Mur ligase family, glutamate ligase domain M484_2345 PF08245 Mur ligase middle domain M484_2345 PF01225 Mur ligase family, catalytic domain M484_2346 PF04101 Glycosyltransferase family 28 C-terminal domain M484_2346 PF03033 Glycosyltransferase family 28 N-terminal domain M484_2347 PF01098 Cell cycle protein M484_2348 PF08245 Mur ligase middle domain M484_2348 PF02875 Mur ligase family, glutamate ligase domain M484_2349 PF00953 Glycosyl transferase family 4 M484_2349 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 M484_235 PF07662 Na+ dependent nucleoside transporter C-terminus M484_235 PF01773 Na+ dependent nucleoside transporter N-terminus M484_235 PF07670 Nucleoside recognition M484_2350 PF08245 Mur ligase middle domain M484_2350 PF01225 Mur ligase family, catalytic domain M484_2350 PF02875 Mur ligase family, glutamate ligase domain M484_2351 PF08245 Mur ligase middle domain M484_2351 PF02875 Mur ligase family, glutamate ligase domain M484_2351 PF01225 Mur ligase family, catalytic domain M484_2352 PF03717 Penicillin-binding Protein dimerisation domain M484_2352 PF00905 Penicillin binding protein transpeptidase domain M484_2353 PF04999 Cell division protein FtsL M484_2354 PF01795 MraW methylase family M484_2355 PF02381 MraZ protein, putative antitoxin-like M484_2356 PF06610 L-alanine exporter M484_2357 PF01797 Transposase IS200 like M484_2358 PF01797 Transposase IS200 like M484_2359 PF00356 Bacterial regulatory proteins, lacI family M484_2359 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family M484_236 PF01566 Natural resistance-associated macrophage protein M484_2360 PF01797 Transposase IS200 like M484_2361 PF10369 Small subunit of acetolactate synthase M484_2362 PF00205 Thiamine pyrophosphate enzyme, central domain M484_2362 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain M484_2362 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain M484_2363 PF00872 Transposase, Mutator family M484_2364 PF00501 AMP-binding enzyme M484_2365 PF03466 LysR substrate binding domain M484_2365 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M484_2367 PF00682 HMGL-like M484_2367 PF08502 LeuA allosteric (dimerisation) domain M484_2368 PF00180 Isocitrate/isopropylmalate dehydrogenase M484_2369 PF00330 Aconitase family (aconitate hydratase) M484_2370 PF00694 Aconitase C-terminal domain M484_2371 PF07690 Major Facilitator Superfamily M484_2372 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle M484_2372 PF12793 Sugar transport-related sRNA regulator N-term M484_2375 PF00528 Binding-protein-dependent transport system inner membrane component M484_2376 PF00005 ABC transporter M484_2377 PF09335 SNARE associated Golgi protein M484_2378 PF00136 DNA polymerase family B M484_2378 PF03104 DNA polymerase family B, exonuclease domain M484_2379 PF12137 RNA polymerase recycling family C-terminal M484_2379 PF00271 Helicase conserved C-terminal domain M484_2379 PF18339 RapA N-terminal Tudor like domain 1 M484_2379 PF18337 RapA N-terminal Tudor like domain M484_2379 PF00176 SNF2 family N-terminal domain M484_238 PF00248 Aldo/keto reductase family M484_2382 PF00691 OmpA family M484_2382 PF05736 OprF membrane domain M484_2389 PF04717 Type VI secretion system, phage-baseplate injector M484_239 PF03466 LysR substrate binding domain M484_239 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M484_2390 PF17871 AAA lid domain M484_2390 PF00004 ATPase family associated with various cellular activities (AAA) M484_2390 PF07724 AAA domain (Cdc48 subfamily) M484_2390 PF10431 C-terminal, D2-small domain, of ClpB protein M484_2399 PF00849 RNA pseudouridylate synthase M484_2400 PF05099 Tellurite resistance protein TerB M484_2400 PF00226 DnaJ domain M484_2401 PF03968 OstA-like protein M484_2401 PF04453 LPS transport system D M484_2402 PF00639 PPIC-type PPIASE domain M484_2402 PF09312 SurA N-terminal domain M484_2403 PF04166 Pyridoxal phosphate biosynthetic protein PdxA M484_2404 PF00398 Ribosomal RNA adenine dimethylase M484_2405 PF04379 ApaG domain M484_2406 PF00149 Calcineurin-like phosphoesterase M484_2408 PF00186 Dihydrofolate reductase M484_2409 PF12821 Threonine/Serine exporter, ThrE M484_241 PF02685 Glucokinase M484_2410 PF06738 Putative threonine/serine exporter M484_2411 PF01810 LysE type translocator M484_2412 PF02142 MGS-like domain M484_2412 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain M484_2412 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain M484_2413 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain M484_2413 PF00117 Glutamine amidotransferase class-I M484_2414 PF01113 Dihydrodipicolinate reductase, N-terminus M484_2414 PF05173 Dihydrodipicolinate reductase, C-terminus M484_2415 PF02401 LytB protein M484_2416 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase M484_2417 PF01252 Signal peptidase (SPase) II M484_2418 PF08264 Anticodon-binding domain of tRNA M484_2418 PF00133 tRNA synthetases class I (I, L, M and V) M484_2418 PF06827 Zinc finger found in FPG and IleRS M484_2419 PF01687 Riboflavin kinase M484_2419 PF06574 FAD synthetase M484_242 PF07350 Protein of unknown function (DUF1479) M484_2420 PF01649 Ribosomal protein S20 M484_2421 PF03466 LysR substrate binding domain M484_2421 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M484_2422 PF06965 Na+/H+ antiporter 1 M484_2423 PF01556 DnaJ C terminal domain M484_2423 PF00226 DnaJ domain M484_2423 PF00684 DnaJ central domain M484_2424 PF00012 Hsp70 protein M484_2425 PF01184 GPR1/FUN34/yaaH family M484_2427 PF07690 Major Facilitator Superfamily M484_2428 PF00994 Probable molybdopterin binding domain M484_2429 PF00923 Transaldolase/Fructose-6-phosphate aldolase M484_243 PF00155 Aminotransferase class I and II M484_2430 PF03883 Peroxide stress protein YaaA M484_2432 PF14821 Threonine synthase N terminus M484_2432 PF00291 Pyridoxal-phosphate dependent enzyme M484_2433 PF00288 GHMP kinases N terminal domain M484_2433 PF08544 GHMP kinases C terminal M484_2434 PF03447 Homoserine dehydrogenase, NAD binding domain M484_2434 PF00742 Homoserine dehydrogenase M484_2434 PF13840 ACT domain M484_2434 PF01842 ACT domain M484_2434 PF00696 Amino acid kinase family M484_2436 PF00072 Response regulator receiver domain M484_2436 PF00486 Transcriptional regulatory protein, C terminal M484_2437 PF05981 CreA protein M484_2439 PF00300 Histidine phosphatase superfamily (branch 1) M484_244 PF01292 Prokaryotic cytochrome b561 M484_2440 PF06445 GyrI-like small molecule binding domain M484_2440 PF12833 Helix-turn-helix domain M484_2441 PF01371 Trp repressor protein M484_2442 PF01931 Protein of unknown function DUF84 M484_2443 PF14718 Soluble lytic murein transglycosylase L domain M484_2443 PF01464 Transglycosylase SLT domain M484_2444 PF00689 Cation transporting ATPase, C-terminus M484_2444 PF00690 Cation transporter/ATPase, N-terminus M484_2446 PF00990 Diguanylate cyclase, GGDEF domain M484_2446 PF17152 Periplasmic sensor domain M484_2447 PF00691 OmpA family M484_2448 PF00005 ABC transporter M484_2448 PF12848 ABC transporter M484_2451 PF13521 AAA domain M484_2451 PF01381 Helix-turn-helix M484_2452 PF18073 Rubredoxin metal binding domain M484_2453 PF18429 Domain of unknown function (DUF5609) M484_2454 PF10144 Bacterial virulence factor haemolysin M484_2455 PF01048 Phosphorylase superfamily M484_2456 PF01676 Metalloenzyme superfamily M484_2457 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain M484_2457 PF00591 Glycosyl transferase family, a/b domain M484_2457 PF02885 Glycosyl transferase family, helical bundle domain M484_2458 PF01791 DeoC/LacD family aldolase M484_2459 PF07662 Na+ dependent nucleoside transporter C-terminus M484_2459 PF07670 Nucleoside recognition M484_2459 PF01773 Na+ dependent nucleoside transporter N-terminus M484_246 PF03783 Curli production assembly/transport component CsgG M484_2460 PF01026 TatD related DNase M484_2461 PF01734 Patatin-like phospholipase M484_2462 PF07043 Protein of unknown function (DUF1328) M484_2463 PF04972 BON domain M484_2464 PF00009 Elongation factor Tu GTP binding domain M484_2464 PF03144 Elongation factor Tu domain 2 M484_2464 PF16658 Class II release factor RF3, C-terminal domain M484_2465 PF00583 Acetyltransferase (GNAT) family M484_2466 PF03603 DNA polymerase III psi subunit M484_2467 PF05175 Methyltransferase small domain M484_2467 PF08468 Methyltransferase small domain N-terminal M484_2469 PF07256 Protein of unknown function (DUF1435) M484_2470 PF00990 Diguanylate cyclase, GGDEF domain M484_2471 PF01095 Pectinesterase M484_2473 PF00873 AcrB/AcrD/AcrF family M484_2474 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion M484_2477 PF01075 Glycosyltransferase family 9 (heptosyltransferase) M484_2478 PF02782 FGGY family of carbohydrate kinases, C-terminal domain M484_2478 PF00370 FGGY family of carbohydrate kinases, N-terminal domain M484_2479 PF00325 Bacterial regulatory proteins, crp family M484_2479 PF04198 Putative sugar-binding domain M484_248 PF05643 Putative bacterial lipoprotein (DUF799) M484_2480 PF00005 ABC transporter M484_2481 PF02653 Branched-chain amino acid transport system / permease component M484_2482 PF02653 Branched-chain amino acid transport system / permease component M484_2483 PF13407 Periplasmic binding protein domain M484_2484 PF01791 DeoC/LacD family aldolase M484_2485 PF03992 Antibiotic biosynthesis monooxygenase M484_2486 PF10696 Protein of unknown function (DUF2501) M484_2487 PF05524 PEP-utilising enzyme, N-terminal M484_2487 PF00381 PTS HPr component phosphorylation site M484_2487 PF02896 PEP-utilising enzyme, TIM barrel domain M484_2487 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 M484_2487 PF00391 PEP-utilising enzyme, mobile domain M484_2489 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit M484_2490 PF12833 Helix-turn-helix domain M484_2491 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit M484_2493 PF05987 Bacterial protein of unknown function (DUF898) M484_2496 PF00665 Integrase core domain M484_2497 PF00665 Integrase core domain M484_25 PF03882 MukF winged-helix domain M484_25 PF17193 MukF C-terminal domain M484_25 PF17192 MukF middle domain M484_250 PF02613 Nitrate reductase delta subunit M484_2502 PF01555 DNA methylase M484_2503 PF01527 Transposase M484_2505 PF12102 Domain of unknown function (DUF3578) M484_2505 PF07728 AAA domain (dynein-related subfamily) M484_2506 PF00665 Integrase core domain M484_2506 PF02796 Helix-turn-helix domain of resolvase M484_2507 PF01695 IstB-like ATP binding protein M484_2508 PF08676 MutL C terminal dimerisation domain M484_2508 PF01119 DNA mismatch repair protein, C-terminal domain M484_251 PF04976 DMSO reductase anchor subunit (DmsC) M484_2510 PF00589 Phage integrase family M484_2510 PF13356 Arm DNA-binding domain M484_2512 PF03739 Lipopolysaccharide export system permease LptF/LptG M484_2513 PF03739 Lipopolysaccharide export system permease LptF/LptG M484_2514 PF02789 Cytosol aminopeptidase family, N-terminal domain M484_2514 PF00883 Cytosol aminopeptidase family, catalytic domain M484_2515 PF04364 DNA polymerase III chi subunit, HolC M484_2516 PF08264 Anticodon-binding domain of tRNA M484_2516 PF00133 tRNA synthetases class I (I, L, M and V) M484_2516 PF10458 Valyl tRNA synthetase tRNA binding arm M484_2517 PF00583 Acetyltransferase (GNAT) family M484_2518 PF06877 Regulator of ribonuclease activity B M484_2519 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain M484_2519 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain M484_252 PF13247 4Fe-4S dicluster domain M484_252 PF12800 4Fe-4S binding domain M484_2520 PF04074 YhcH/YjgK/YiaL M484_2523 PF00528 Binding-protein-dependent transport system inner membrane component M484_2524 PF00528 Binding-protein-dependent transport system inner membrane component M484_2524 PF12911 N-terminal TM domain of oligopeptide transport permease C M484_2525 PF00005 ABC transporter M484_2525 PF08352 Oligopeptide/dipeptide transporter, C-terminal region M484_2526 PF08352 Oligopeptide/dipeptide transporter, C-terminal region M484_2526 PF00005 ABC transporter M484_2527 PF03477 ATP cone domain M484_2527 PF13597 Anaerobic ribonucleoside-triphosphate reductase M484_253 PF01568 Molydopterin dinucleotide binding domain M484_253 PF00384 Molybdopterin oxidoreductase M484_253 PF04879 Molybdopterin oxidoreductase Fe4S4 domain M484_2530 PF07702 UTRA domain M484_2530 PF00392 Bacterial regulatory proteins, gntR family M484_2531 PF06754 Phosphonate metabolism protein PhnG M484_2532 PF05845 Bacterial phosphonate metabolism protein (PhnH) M484_2533 PF05861 Bacterial phosphonate metabolism protein (PhnI) M484_2534 PF06007 Phosphonate metabolism protein PhnJ M484_2535 PF00005 ABC transporter M484_2536 PF00005 ABC transporter M484_2537 PF07969 Amidohydrolase family M484_2539 PF12706 Beta-lactamase superfamily domain M484_2540 PF13460 NAD(P)H-binding M484_2543 PF17912 MalK OB fold domain M484_2543 PF03459 TOBE domain M484_2543 PF00005 ABC transporter M484_2544 PF00528 Binding-protein-dependent transport system inner membrane component M484_2546 PF13416 Bacterial extracellular solute-binding protein M484_2549 PF01541 GIY-YIG catalytic domain M484_255 PF05638 Type VI secretion system effector, Hcp M484_2550 PF13508 Acetyltransferase (GNAT) domain M484_2554 PF02321 Outer membrane efflux protein M484_2554 PF08139 Prokaryotic membrane lipoprotein lipid attachment site M484_2555 PF00873 AcrB/AcrD/AcrF family M484_2556 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion M484_2556 PF00529 HlyD membrane-fusion protein of T1SS M484_2558 PF00296 Luciferase-like monooxygenase M484_2559 PF01381 Helix-turn-helix M484_2561 PF12343 Cold shock protein DEAD box A M484_2561 PF00271 Helicase conserved C-terminal domain M484_2561 PF00270 DEAD/DEAH box helicase M484_2561 PF03880 DbpA RNA binding domain M484_2562 PF13181 Tetratricopeptide repeat M484_2562 PF07719 Tetratricopeptide repeat M484_2563 PF00575 S1 RNA binding domain M484_2563 PF03725 3' exoribonuclease family, domain 2 M484_2563 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain M484_2563 PF00013 KH domain M484_2563 PF01138 3' exoribonuclease family, domain 1 M484_2565 PF13276 HTH-like domain M484_2565 PF13333 Integrase core domain M484_2565 PF00665 Integrase core domain M484_2568 PF16901 C-terminal domain of alpha-glycerophosphate oxidase M484_2568 PF01266 FAD dependent oxidoreductase M484_2569 PF00343 Carbohydrate phosphorylase M484_257 PF00005 ABC transporter M484_2570 PF00534 Glycosyl transferases group 1 M484_2570 PF08323 Starch synthase catalytic domain M484_2571 PF00483 Nucleotidyl transferase M484_2572 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) M484_2572 PF18390 Glycogen debranching enzyme C-terminal domain M484_2572 PF00128 Alpha amylase, catalytic domain M484_2573 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) M484_2573 PF02806 Alpha amylase, C-terminal all-beta domain M484_2573 PF00128 Alpha amylase, catalytic domain M484_2574 PF06580 Histidine kinase M484_2574 PF07694 5TMR of 5TMR-LYT M484_2575 PF09134 Invasin, domain 3 M484_2575 PF11924 Inverse autotransporter, beta-domain M484_2575 PF02369 Bacterial Ig-like domain (group 1) M484_2575 PF07979 Intimin C-type lectin domain M484_258 PF00528 Binding-protein-dependent transport system inner membrane component M484_2580 PF02774 Semialdehyde dehydrogenase, dimerisation domain M484_2580 PF01118 Semialdehyde dehydrogenase, NAD binding domain M484_2581 PF01914 MarC family integral membrane protein M484_2585 PF01202 Shikimate kinase M484_2586 PF02447 GntP family permease M484_2587 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family M484_2587 PF00356 Bacterial regulatory proteins, lacI family M484_2588 PF00356 Bacterial regulatory proteins, lacI family M484_2588 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family M484_2589 PF17954 Quercetinase C-terminal cupin domain M484_2589 PF02678 Pirin M484_2591 PF00486 Transcriptional regulatory protein, C terminal M484_2591 PF00072 Response regulator receiver domain M484_2593 PF01116 Fructose-bisphosphate aldolase class-II M484_2595 PF13407 Periplasmic binding protein domain M484_2596 PF02653 Branched-chain amino acid transport system / permease component M484_2597 PF00005 ABC transporter M484_2598 PF00672 HAMP domain M484_2598 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain M484_2599 PF08448 PAS fold M484_2599 PF13188 PAS domain M484_2599 PF00512 His Kinase A (phospho-acceptor) domain M484_2599 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M484_2599 PF00072 Response regulator receiver domain M484_26 PF04288 MukE-like family M484_260 PF13406 Transglycosylase SLT domain M484_2601 PF01384 Phosphate transporter family M484_2602 PF01797 Transposase IS200 like M484_2603 PF10625 Universal stress protein B (UspB) M484_2604 PF00582 Universal stress protein family M484_2605 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase M484_2605 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain M484_2606 PF00413 Matrixin M484_2606 PF08548 Peptidase M10 serralysin C terminal M484_2606 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) M484_2607 PF04445 Putative SAM-dependent methyltransferase M484_2608 PF01432 Peptidase family M3 M484_2609 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ M484_2610 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain M484_2610 PF07992 Pyridine nucleotide-disulphide oxidoreductase M484_2611 PF13556 PucR C-terminal helix-turn-helix domain M484_2611 PF05651 Putative sugar diacid recognition M484_2611 PF17853 GGDEF-like domain M484_2612 PF02447 GntP family permease M484_2613 PF02595 Glycerate kinase family M484_2618 PF03631 Virulence factor BrkB M484_2619 PF02611 CDP-diacylglycerol pyrophosphatase M484_2620 PF05170 AsmA family M484_2621 PF00563 EAL domain M484_2622 PF01361 Tautomerase enzyme M484_2623 PF00294 pfkB family carbohydrate kinase M484_2624 PF00675 Insulinase (Peptidase family M16) M484_2624 PF05193 Peptidase M16 inactive domain M484_2626 PF00375 Sodium:dicarboxylate symporter family M484_2628 PF06917 Periplasmic pectate lyase M484_2629 PF06178 Oligogalacturonate-specific porin protein (KdgM) M484_2630 PF00990 Diguanylate cyclase, GGDEF domain M484_2630 PF00563 EAL domain M484_2630 PF17154 Gammaproteobacterial periplasmic sensor domain M484_2630 PF00672 HAMP domain M484_2631 PF01270 Glycosyl hydrolases family 8 M484_2632 PF08352 Oligopeptide/dipeptide transporter, C-terminal region M484_2632 PF00005 ABC transporter M484_2633 PF00005 ABC transporter M484_2633 PF08352 Oligopeptide/dipeptide transporter, C-terminal region M484_2634 PF00528 Binding-protein-dependent transport system inner membrane component M484_2634 PF12911 N-terminal TM domain of oligopeptide transport permease C M484_2635 PF00528 Binding-protein-dependent transport system inner membrane component M484_2636 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle M484_2638 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB M484_2638 PF17287 POTRA domain M484_2638 PF08479 POTRA domain, ShlB-type M484_2639 PF04829 Pre-toxin domain with VENN motif M484_2639 PF05860 haemagglutination activity domain M484_2639 PF13332 Hemagglutinin repeat M484_2639 PF05594 Haemagluttinin repeat M484_2642 PF07690 Major Facilitator Superfamily M484_2643 PF05231 MASE1 M484_2643 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M484_2643 PF07730 Histidine kinase M484_2644 PF00196 Bacterial regulatory proteins, luxR family M484_2644 PF00072 Response regulator receiver domain M484_2645 PF08019 Phosphoethanolamine transferase EptA/EptB M484_2645 PF00884 Sulfatase M484_2646 PF01695 IstB-like ATP binding protein M484_2647 PF00665 Integrase core domain M484_2647 PF02796 Helix-turn-helix domain of resolvase M484_2648 PF07338 Protein of unknown function (DUF1471) M484_2649 PF02770 Acyl-CoA dehydrogenase, middle domain M484_2649 PF00441 Acyl-CoA dehydrogenase, C-terminal domain M484_2649 PF18158 Adaptive response protein AidB N-terminal domain M484_2650 PF08032 RNA 2'-O ribose methyltransferase substrate binding M484_2650 PF00588 SpoU rRNA Methylase family M484_2651 PF17876 Cold shock domain M484_2651 PF08461 Ribonuclease R winged-helix domain M484_2651 PF00575 S1 RNA binding domain M484_2651 PF08206 Ribonuclease B OB domain M484_2651 PF00773 RNB domain M484_2652 PF02082 Transcriptional regulator M484_2653 PF00709 Adenylosuccinate synthetase M484_2654 PF09838 Uncharacterized protein conserved in bacteria (DUF2065) M484_2655 PF01145 SPFH domain / Band 7 family M484_2656 PF01145 SPFH domain / Band 7 family M484_2656 PF12221 Bacterial membrane protein N terminal M484_2657 PF16360 GTP-binding GTPase Middle Region M484_2657 PF01926 50S ribosome-binding GTPase M484_2657 PF13167 GTP-binding GTPase N-terminal M484_2658 PF17209 Hfq protein M484_2660 PF01119 DNA mismatch repair protein, C-terminal domain M484_2660 PF08676 MutL C terminal dimerisation domain M484_2661 PF01520 N-acetylmuramoyl-L-alanine amidase M484_2662 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE M484_2663 PF01256 Carbohydrate kinase M484_2663 PF03853 YjeF-related protein N-terminus M484_2664 PF08331 Domain of unknown function (DUF1730) M484_2667 PF00929 Exonuclease M484_2668 PF03193 RsgA GTPase M484_2669 PF02666 Phosphatidylserine decarboxylase M484_2670 PF12794 Mechanosensitive ion channel inner membrane domain 1 M484_2670 PF12795 Mechanosensitive ion channel porin domain M484_2670 PF00924 Mechanosensitive ion channel M484_2671 PF00152 tRNA synthetases class II (D, K and N) M484_2672 PF00890 FAD binding domain M484_2672 PF02910 Fumarate reductase flavoprotein C-term M484_2673 PF13183 4Fe-4S dicluster domain M484_2673 PF13085 2Fe-2S iron-sulfur cluster binding domain M484_2674 PF02300 Fumarate reductase subunit C M484_2675 PF02313 Fumarate reductase subunit D M484_2676 PF00893 Small Multidrug Resistance protein M484_2677 PF09285 Elongation factor P, C-terminal M484_2677 PF08207 Elongation factor P (EF-P) KOW-like domain M484_2677 PF01132 Elongation factor P (EF-P) OB domain M484_2678 PF04055 Radical SAM superfamily M484_2679 PF13698 Domain of unknown function (DUF4156) M484_2680 PF00118 TCP-1/cpn60 chaperonin family M484_2681 PF00166 Chaperonin 10 Kd subunit M484_2682 PF04186 FxsA cytoplasmic membrane protein M484_2683 PF00206 Lyase M484_2683 PF10415 Fumarase C C-terminus M484_2684 PF03605 Anaerobic c4-dicarboxylate membrane transporter M484_2685 PF03091 CutA1 divalent ion tolerance protein M484_2686 PF02683 Cytochrome C biogenesis protein transmembrane region M484_2686 PF11412 Disulphide bond corrector protein DsbC M484_2687 PF04879 Molybdopterin oxidoreductase Fe4S4 domain M484_2687 PF00384 Molybdopterin oxidoreductase M484_2687 PF01568 Molydopterin dinucleotide binding domain M484_2688 PF13247 4Fe-4S dicluster domain M484_2688 PF12800 4Fe-4S binding domain M484_2689 PF13247 4Fe-4S dicluster domain M484_2689 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster M484_2689 PF07992 Pyridine nucleotide-disulphide oxidoreductase M484_2697 PF06379 L-rhamnose-proton symport protein (RhaT) M484_2698 PF12833 Helix-turn-helix domain M484_2698 PF02311 AraC-like ligand binding domain M484_2699 PF12833 Helix-turn-helix domain M484_2699 PF02311 AraC-like ligand binding domain M484_27 PF16330 MukB hinge domain M484_27 PF04310 MukB N-terminal M484_270 PF10431 C-terminal, D2-small domain, of ClpB protein M484_270 PF00004 ATPase family associated with various cellular activities (AAA) M484_270 PF17871 AAA lid domain M484_270 PF07724 AAA domain (Cdc48 subfamily) M484_2702 PF02782 FGGY family of carbohydrate kinases, C-terminal domain M484_2702 PF00370 FGGY family of carbohydrate kinases, N-terminal domain M484_2703 PF06134 L-rhamnose isomerase (RhaA) M484_2704 PF00596 Class II Aldolase and Adducin N-terminal domain M484_2705 PF00465 Iron-containing alcohol dehydrogenase M484_2706 PF05336 L-rhamnose mutarotase M484_2707 PF00436 Single-strand binding protein family M484_2708 PF17760 UvrA interaction domain M484_2708 PF00005 ABC transporter M484_2708 PF17755 UvrA DNA-binding domain M484_2709 PF04237 YjbR M484_271 PF16970 Type-1 fimbrial protein, A M484_2710 PF00155 Aminotransferase class I and II M484_2711 PF01168 Alanine racemase, N-terminal domain M484_2711 PF00842 Alanine racemase, C-terminal domain M484_2712 PF00772 DnaB-like helicase N terminal domain M484_2712 PF03796 DnaB-like helicase C terminal domain M484_2713 PF08240 Alcohol dehydrogenase GroES-like domain M484_2713 PF00107 Zinc-binding dehydrogenase M484_2714 PF09583 Phage shock protein G (Phageshock_PspG) M484_2715 PF01207 Dihydrouridine synthase (Dus) M484_2716 PF01475 Ferric uptake regulator family M484_2717 PF01726 LexA DNA binding domain M484_2717 PF00717 Peptidase S24-like M484_2718 PF01219 Prokaryotic diacylglycerol kinase M484_2719 PF01553 Acyltransferase M484_272 PF02753 Pili assembly chaperone PapD, C-terminal domain M484_272 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain M484_2720 PF01040 UbiA prenyltransferase family M484_2721 PF04345 Chorismate lyase M484_2723 PF12951 Passenger-associated-transport-repeat M484_2724 PF01565 FAD binding domain M484_2724 PF08031 Berberine and berberine like M484_2727 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain M484_2728 PF13954 PapC N-terminal domain M484_2728 PF13953 PapC C-terminal domain M484_2728 PF00577 Outer membrane usher protein M484_273 PF00577 Outer membrane usher protein M484_273 PF13954 PapC N-terminal domain M484_273 PF13953 PapC C-terminal domain M484_2730 PF02342 TerD domain M484_2731 PF02342 TerD domain M484_2732 PF03741 Integral membrane protein TerC family M484_2733 PF05099 Tellurite resistance protein TerB M484_2734 PF02342 TerD domain M484_2735 PF02342 TerD domain M484_2739 PF11202 Phosphoribosyl transferase (PRTase) M484_2739 PF15608 PELOTA RNA binding domain M484_274 PF00872 Transposase, Mutator family M484_2743 PF04055 Radical SAM superfamily M484_2744 PF06228 Haem utilisation ChuX/HutX M484_2745 PF13460 NAD(P)H-binding M484_2746 PF10636 Hemin uptake protein hemP M484_2747 PF07715 TonB-dependent Receptor Plug Domain M484_2747 PF00593 TonB dependent receptor M484_2748 PF05171 Haemin-degrading HemS.ChuX domain M484_2749 PF01497 Periplasmic binding protein M484_275 PF13953 PapC C-terminal domain M484_275 PF13954 PapC N-terminal domain M484_275 PF00577 Outer membrane usher protein M484_2750 PF01032 FecCD transport family M484_2751 PF00005 ABC transporter M484_2752 PF01053 Cys/Met metabolism PLP-dependent enzyme M484_2753 PF03222 Tryptophan/tyrosine permease family M484_2754 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M484_2754 PF03466 LysR substrate binding domain M484_2755 PF01206 Sulfurtransferase TusA M484_2756 PF04143 Sulphur transport M484_2757 PF01312 FlhB HrpN YscU SpaS Family M484_2758 PF01311 Bacterial export proteins, family 1 M484_2759 PF01313 Bacterial export proteins, family 3 M484_2760 PF00813 FliP family M484_2761 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term M484_2764 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain M484_2764 PF18269 T3SS EscN ATPase C-terminal domain M484_2765 PF00771 FHIPEP family M484_2768 PF01514 Secretory protein of YscJ/FliF family M484_2772 PF12833 Helix-turn-helix domain M484_2772 PF14525 AraC-binding-like domain M484_2776 PF01627 Hpt domain M484_2776 PF00512 His Kinase A (phospho-acceptor) domain M484_2776 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M484_2776 PF00672 HAMP domain M484_2776 PF00072 Response regulator receiver domain M484_2776 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) M484_2777 PF00072 Response regulator receiver domain M484_2777 PF00196 Bacterial regulatory proteins, luxR family M484_2778 PF00375 Sodium:dicarboxylate symporter family M484_2779 PF16177 Acetyl-coenzyme A synthetase N-terminus M484_2779 PF00501 AMP-binding enzyme M484_2779 PF13193 AMP-binding enzyme C-terminal domain M484_2780 PF04341 Protein of unknown function, DUF485 M484_2781 PF00474 Sodium:solute symporter family M484_2783 PF00665 Integrase core domain M484_2783 PF02796 Helix-turn-helix domain of resolvase M484_2784 PF01695 IstB-like ATP binding protein M484_2785 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain M484_2785 PF01367 5'-3' exonuclease, C-terminal SAM fold M484_2786 PF13276 HTH-like domain M484_2786 PF13683 Integrase core domain M484_2787 PF01527 Transposase M484_2793 PF00132 Bacterial transferase hexapeptide (six repeats) M484_2794 PF18317 Shikimate 5'-dehydrogenase C-terminal domain M484_2794 PF01488 Shikimate / quinate 5-dehydrogenase M484_2794 PF08501 Shikimate dehydrogenase substrate binding domain M484_2795 PF01300 Telomere recombination M484_2796 PF01396 Topoisomerase DNA binding C4 zinc finger M484_2797 PF04361 Protein of unknown function (DUF494) M484_2798 PF02481 DNA recombination-mediator protein A M484_2798 PF17782 DprA winged helix domain M484_2799 PF01327 Polypeptide deformylase M484_28 PF01797 Transposase IS200 like M484_2800 PF00551 Formyl transferase M484_2800 PF02911 Formyl transferase, C-terminal domain M484_2801 PF01029 NusB family M484_2801 PF01189 16S rRNA methyltransferase RsmB/F M484_2802 PF02080 TrkA-C domain M484_2802 PF02254 TrkA-N domain M484_2803 PF01741 Large-conductance mechanosensitive channel, MscL M484_2804 PF03889 Alternative ribosome-rescue factor A M484_2805 PF13411 MerR HTH family regulatory protein M484_2806 PF01196 Ribosomal protein L17 M484_2807 PF01000 RNA polymerase Rpb3/RpoA insert domain M484_2807 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain M484_2807 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain M484_2808 PF01479 S4 domain M484_2808 PF00163 Ribosomal protein S4/S9 N-terminal domain M484_2809 PF00411 Ribosomal protein S11 M484_2810 PF00416 Ribosomal protein S13/S18 M484_2811 PF00444 Ribosomal protein L36 M484_2812 PF00344 SecY translocase M484_2813 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A M484_2814 PF00327 Ribosomal protein L30p/L7e M484_2815 PF03719 Ribosomal protein S5, C-terminal domain M484_2815 PF00333 Ribosomal protein S5, N-terminal domain M484_2816 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast M484_2817 PF00347 Ribosomal protein L6 M484_2818 PF00410 Ribosomal protein S8 M484_2819 PF00253 Ribosomal protein S14p/S29e M484_2820 PF00673 ribosomal L5P family C-terminus M484_2820 PF00281 Ribosomal protein L5 M484_2821 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 M484_2821 PF00467 KOW motif M484_2822 PF00238 Ribosomal protein L14p/L23e M484_2823 PF00366 Ribosomal protein S17 M484_2824 PF00831 Ribosomal L29 protein M484_2825 PF00252 Ribosomal protein L16p/L10e M484_2826 PF00189 Ribosomal protein S3, C-terminal domain M484_2826 PF07650 KH domain M484_2827 PF00237 Ribosomal protein L22p/L17e M484_2828 PF00203 Ribosomal protein S19 M484_2829 PF00181 Ribosomal Proteins L2, RNA binding domain M484_2829 PF03947 Ribosomal Proteins L2, C-terminal domain M484_283 PF02796 Helix-turn-helix domain of resolvase M484_283 PF00665 Integrase core domain M484_2830 PF00276 Ribosomal protein L23 M484_2831 PF00573 Ribosomal protein L4/L1 family M484_2832 PF00297 Ribosomal protein L3 M484_2833 PF00338 Ribosomal protein S10p/S20e M484_2834 PF00210 Ferritin-like domain M484_2835 PF04324 BFD-like [2Fe-2S] binding domain M484_2836 PF01797 Transposase IS200 like M484_2837 PF03144 Elongation factor Tu domain 2 M484_2837 PF00009 Elongation factor Tu GTP binding domain M484_2837 PF03143 Elongation factor Tu C-terminal domain M484_2838 PF03144 Elongation factor Tu domain 2 M484_2838 PF03764 Elongation factor G, domain IV M484_2838 PF14492 Elongation Factor G, domain II M484_2838 PF00679 Elongation factor G C-terminus M484_2838 PF00009 Elongation factor Tu GTP binding domain M484_2839 PF00177 Ribosomal protein S7p/S5e M484_284 PF01695 IstB-like ATP binding protein M484_2840 PF00164 Ribosomal protein S12/S23 M484_2841 PF04077 DsrH like protein M484_2842 PF02635 DsrE/DsrF-like family M484_2843 PF02635 DsrE/DsrF-like family M484_2844 PF08348 YheO-like PAS domain M484_2844 PF13309 HTH domain M484_2845 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase M484_2845 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase M484_2846 PF04102 SlyX M484_2847 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase M484_2848 PF09526 Probable metal-binding protein (DUF2387) M484_2849 PF00999 Sodium/hydrogen exchanger family M484_2849 PF02254 TrkA-N domain M484_2850 PF02525 Flavodoxin-like fold M484_2851 PF00005 ABC transporter M484_2851 PF12848 ABC transporter M484_2852 PF00535 Glycosyl transferase family 2 M484_2855 PF02668 Taurine catabolism dioxygenase TauD, TfdA family M484_2856 PF00528 Binding-protein-dependent transport system inner membrane component M484_2857 PF00005 ABC transporter M484_2858 PF04069 Substrate binding domain of ABC-type glycine betaine transport system M484_2859 PF01810 LysE type translocator M484_2860 PF00561 alpha/beta hydrolase fold M484_2861 PF06794 Uncharacterised protein family (UPF0270) M484_2862 PF00485 Phosphoribulokinase / Uridine kinase family M484_2864 PF02566 OsmC-like protein M484_2865 PF13545 Crp-like helix-turn-helix domain M484_2865 PF00027 Cyclic nucleotide-binding domain M484_2866 PF12805 FUSC-like inner membrane protein yccS M484_2867 PF00202 Aminotransferase class-III M484_2868 PF00117 Glutamine amidotransferase class-I M484_2869 PF05872 Bacterial protein of unknown function (DUF853) M484_2870 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD M484_2871 PF02056 Family 4 glycosyl hydrolase M484_2871 PF11975 Family 4 glycosyl hydrolase C-terminal domain M484_2872 PF00356 Bacterial regulatory proteins, lacI family M484_2874 PF07690 Major Facilitator Superfamily M484_2875 PF07969 Amidohydrolase family M484_2876 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain M484_2876 PF04324 BFD-like [2Fe-2S] binding domain M484_2876 PF01077 Nitrite and sulphite reductase 4Fe-4S domain M484_2876 PF18267 Rubredoxin NAD+ reductase C-terminal domain M484_2876 PF07992 Pyridine nucleotide-disulphide oxidoreductase M484_2877 PF13806 Rieske-like [2Fe-2S] domain M484_2878 PF01226 Formate/nitrite transporter M484_2879 PF10414 Sirohaem synthase dimerisation region M484_2879 PF14824 Sirohaem biosynthesis protein central M484_2879 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases M484_288 PF04717 Type VI secretion system, phage-baseplate injector M484_2880 PF00579 tRNA synthetases class I (W and Y) M484_2881 PF13419 Haloacid dehalogenase-like hydrolase M484_2882 PF00834 Ribulose-phosphate 3 epimerase family M484_2883 PF02086 D12 class N6 adenine-specific DNA methyltransferase M484_2884 PF05036 Sporulation related domain M484_2885 PF01761 3-dehydroquinate synthase M484_2886 PF01202 Shikimate kinase M484_2887 PF00263 Bacterial type II and III secretion system protein M484_2887 PF03958 Bacterial type II/III secretion system short domain M484_2892 PF17092 Penicillin-binding protein OB-like domain M484_2892 PF00912 Transglycosylase M484_2892 PF00905 Penicillin binding protein transpeptidase domain M484_2893 PF00293 NUDIX domain M484_2895 PF07095 Intracellular growth attenuator protein IgaA M484_2896 PF13419 Haloacid dehalogenase-like hydrolase M484_2897 PF01479 S4 domain M484_2898 PF01430 Hsp33 protein M484_2899 PF01293 Phosphoenolpyruvate carboxykinase M484_29 PF01471 Putative peptidoglycan binding domain M484_29 PF03734 L,D-transpeptidase catalytic domain M484_2900 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M484_2900 PF00512 His Kinase A (phospho-acceptor) domain M484_2900 PF00672 HAMP domain M484_2901 PF00072 Response regulator receiver domain M484_2901 PF00486 Transcriptional regulatory protein, C terminal M484_2902 PF01272 Transcription elongation factor, GreA/GreB, C-term M484_2902 PF03449 Transcription elongation factor, N-terminal M484_2903 PF16921 Tex protein YqgF-like domain M484_2903 PF09371 Tex-like protein N-terminal domain M484_2903 PF00575 S1 RNA binding domain M484_2903 PF17674 HHH domain M484_2904 PF04023 FeoA domain M484_2905 PF02421 Ferrous iron transport protein B M484_2905 PF17910 FeoB cytosolic helical domain M484_2905 PF07664 Ferrous iron transport protein B C terminus M484_2905 PF07670 Nucleoside recognition M484_2906 PF09012 FeoC like transcriptional regulator M484_2907 PF07338 Protein of unknown function (DUF1471) M484_2908 PF00561 alpha/beta hydrolase fold M484_2909 PF00156 Phosphoribosyl transferase domain M484_2910 PF01521 Iron-sulphur cluster biosynthesis M484_2910 PF01106 NifU-like domain M484_2911 PF02446 4-alpha-glucanotransferase M484_2912 PF00343 Carbohydrate phosphorylase M484_2913 PF00196 Bacterial regulatory proteins, luxR family M484_2913 PF17874 MalT-like TPR region M484_2914 PF00581 Rhodanese-like domain M484_2915 PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease M484_2915 PF01694 Rhomboid family M484_2916 PF00455 DeoR C terminal sensor domain M484_2916 PF08220 DeoR-like helix-turn-helix domain M484_2918 PF00665 Integrase core domain M484_2918 PF13333 Integrase core domain M484_2918 PF13276 HTH-like domain M484_2919 PF07690 Major Facilitator Superfamily M484_2923 PF00872 Transposase, Mutator family M484_2924 PF13700 Domain of unknown function (DUF4158) M484_2924 PF01526 Tn3 transposase DDE domain M484_2925 PF09107 Elongation factor SelB, winged helix M484_2925 PF00009 Elongation factor Tu GTP binding domain M484_2925 PF03144 Elongation factor Tu domain 2 M484_2925 PF09106 Elongation factor SelB, winged helix M484_2926 PF12390 Selenocysteine synthase N terminal M484_2926 PF03841 L-seryl-tRNA selenium transferase M484_2927 PF04216 Protein involved in formate dehydrogenase formation M484_2928 PF01292 Prokaryotic cytochrome b561 M484_2929 PF13247 4Fe-4S dicluster domain M484_2929 PF09163 Formate dehydrogenase N, transmembrane M484_2930 PF04879 Molybdopterin oxidoreductase Fe4S4 domain M484_2930 PF00384 Molybdopterin oxidoreductase M484_2930 PF01568 Molydopterin dinucleotide binding domain M484_2931 PF04879 Molybdopterin oxidoreductase Fe4S4 domain M484_2931 PF00384 Molybdopterin oxidoreductase M484_2931 PF01568 Molydopterin dinucleotide binding domain M484_2932 PF02634 FdhD/NarQ family M484_2933 PF02777 Iron/manganese superoxide dismutases, C-terminal domain M484_2933 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain M484_2934 PF02203 Tar ligand binding domain homologue M484_2934 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain M484_2934 PF00672 HAMP domain M484_2938 PF10928 Protein of unknown function (DUF2810) M484_294 PF08274 PhnA Zinc-Ribbon M484_294 PF03831 PhnA domain M484_2940 PF05068 Mannitol repressor M484_2941 PF08125 Mannitol dehydrogenase C-terminal domain M484_2941 PF01232 Mannitol dehydrogenase Rossmann domain M484_2942 PF02378 Phosphotransferase system, EIIC M484_2942 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit M484_2942 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 M484_2943 PF11254 Protein of unknown function (DUF3053) M484_2944 PF02092 Glycyl-tRNA synthetase beta subunit M484_2944 PF05746 DALR anticodon binding domain M484_2945 PF02091 Glycyl-tRNA synthetase alpha subunit M484_2947 PF03352 Methyladenine glycosylase M484_2949 PF00691 OmpA family M484_2949 PF13488 Glycine zipper M484_2951 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain M484_2951 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain M484_2952 PF00128 Alpha amylase, catalytic domain M484_2954 PF00155 Aminotransferase class I and II M484_2955 PF06826 Predicted Permease Membrane Region M484_2955 PF02080 TrkA-C domain M484_2956 PF00011 Hsp20/alpha crystallin family M484_2957 PF00011 Hsp20/alpha crystallin family M484_2958 PF07119 Protein of unknown function (DUF1375) M484_2959 PF12566 Protein of unknown function (DUF3748) M484_2959 PF07676 WD40-like Beta Propeller Repeat M484_296 PF04011 LemA family M484_2960 PF12566 Protein of unknown function (DUF3748) M484_2960 PF07676 WD40-like Beta Propeller Repeat M484_2961 PF00291 Pyridoxal-phosphate dependent enzyme M484_2961 PF13291 ACT domain M484_2962 PF02423 Ornithine cyclodeaminase/mu-crystallin family M484_2964 PF00665 Integrase core domain M484_2964 PF13333 Integrase core domain M484_2964 PF13276 HTH-like domain M484_2966 PF18053 DNA gyrase B subunit insert domain M484_2966 PF00986 DNA gyrase B subunit, carboxyl terminus M484_2966 PF01751 Toprim domain M484_2966 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M484_2966 PF00204 DNA gyrase B M484_2967 PF02463 RecF/RecN/SMC N terminal domain M484_2968 PF02767 DNA polymerase III beta subunit, central domain M484_2968 PF00712 DNA polymerase III beta subunit, N-terminal domain M484_2968 PF02768 DNA polymerase III beta subunit, C-terminal domain M484_2969 PF00308 Bacterial dnaA protein M484_2969 PF08299 Bacterial dnaA protein helix-turn-helix M484_2969 PF11638 DnaA N-terminal domain M484_2971 PF00468 Ribosomal protein L34 M484_2972 PF00825 Ribonuclease P M484_2973 PF01809 Putative membrane protein insertion efficiency factor M484_2974 PF14849 YidC periplasmic domain M484_2974 PF02096 60Kd inner membrane protein M484_2975 PF01926 50S ribosome-binding GTPase M484_2975 PF12631 MnmE helical domain M484_2975 PF10396 GTP-binding protein TrmE N-terminus M484_2976 PF12241 Trans-2-enoyl-CoA reductase catalytic region M484_2976 PF07055 Enoyl reductase FAD binding domain M484_2976 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase M484_2979 PF00860 Permease family M484_2980 PF13419 Haloacid dehalogenase-like hydrolase M484_2981 PF00528 Binding-protein-dependent transport system inner membrane component M484_2982 PF00528 Binding-protein-dependent transport system inner membrane component M484_2983 PF00497 Bacterial extracellular solute-binding proteins, family 3 M484_2985 PF01895 PhoU domain M484_2986 PF00005 ABC transporter M484_2987 PF00528 Binding-protein-dependent transport system inner membrane component M484_2988 PF00528 Binding-protein-dependent transport system inner membrane component M484_2989 PF12849 PBP superfamily domain M484_299 PF00005 ABC transporter M484_2991 PF01380 SIS domain M484_2992 PF00132 Bacterial transferase hexapeptide (six repeats) M484_2992 PF12804 MobA-like NTP transferase domain M484_2993 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain M484_2993 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain M484_2994 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain M484_2994 PF02874 ATP synthase alpha/beta family, beta-barrel domain M484_2995 PF00231 ATP synthase M484_2996 PF02874 ATP synthase alpha/beta family, beta-barrel domain M484_2996 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain M484_2996 PF00306 ATP synthase alpha/beta chain, C terminal domain M484_2997 PF00213 ATP synthase delta (OSCP) subunit M484_2998 PF00430 ATP synthase B/B' CF(0) M484_2999 PF00137 ATP synthase subunit C M484_30 PF05951 Bacterial protein of unknown function (DUF882) M484_300 PF03379 CcmB protein M484_3000 PF00119 ATP synthase A chain M484_3001 PF03899 ATP synthase I chain M484_3002 PF02527 rRNA small subunit methyltransferase G M484_3003 PF01134 Glucose inhibited division protein A M484_3003 PF13932 GidA associated domain M484_3004 PF00258 Flavodoxin M484_3005 PF01037 Lrp/AsnC ligand binding domain M484_3006 PF03590 Aspartate-ammonia ligase M484_3007 PF05762 VWA domain containing CoxE-like protein M484_3008 PF17868 AAA lid domain M484_3008 PF07728 AAA domain (dynein-related subfamily) M484_3008 PF12592 Protein of unknown function (DUF3763) M484_3009 PF02705 K+ potassium transporter M484_301 PF01578 Cytochrome C assembly protein M484_3010 PF05025 RbsD / FucU transport protein family M484_3011 PF00294 pfkB family carbohydrate kinase M484_3012 PF00294 pfkB family carbohydrate kinase M484_3013 PF07690 Major Facilitator Superfamily M484_3015 PF07729 FCD domain M484_3015 PF00392 Bacterial regulatory proteins, gntR family M484_302 PF04995 Heme exporter protein D (CcmD) M484_3021 PF00872 Transposase, Mutator family M484_3022 PF03205 Molybdopterin guanine dinucleotide synthesis protein B M484_3023 PF12804 MobA-like NTP transferase domain M484_3024 PF06288 Protein of unknown function (DUF1040) M484_3025 PF01636 Phosphotransferase enzyme family M484_3026 PF01323 DSBA-like thioredoxin domain M484_3027 PF00476 DNA polymerase family A M484_3027 PF01367 5'-3' exonuclease, C-terminal SAM fold M484_3027 PF01612 3'-5' exonuclease M484_3027 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain M484_3028 PF01926 50S ribosome-binding GTPase M484_3029 PF04220 Der GTPase activator (YihI) M484_303 PF03100 CcmE M484_3030 PF06969 HemN C-terminal domain M484_3030 PF04055 Radical SAM superfamily M484_3031 PF00158 Sigma-54 interaction domain M484_3031 PF00072 Response regulator receiver domain M484_3031 PF02954 Bacterial regulatory protein, Fis family M484_3032 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M484_3032 PF00512 His Kinase A (phospho-acceptor) domain M484_3032 PF00989 PAS fold M484_3033 PF03951 Glutamine synthetase, beta-Grasp domain M484_3033 PF00120 Glutamine synthetase, catalytic domain M484_3035 PF13419 Haloacid dehalogenase-like hydrolase M484_3036 PF03631 Virulence factor BrkB M484_3037 PF02580 D-Tyr-tRNA(Tyr) deacylase M484_3038 PF01695 IstB-like ATP binding protein M484_3039 PF00665 Integrase core domain M484_3039 PF02796 Helix-turn-helix domain of resolvase M484_304 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal M484_304 PF01578 Cytochrome C assembly protein M484_3040 PF09500 Putative thioesterase (yiiD_Cterm) M484_3040 PF00583 Acetyltransferase (GNAT) family M484_3041 PF05170 AsmA family M484_3042 PF00860 Permease family M484_3043 PF03616 Sodium/glutamate symporter M484_3044 PF00270 DEAD/DEAH box helicase M484_3044 PF00271 Helicase conserved C-terminal domain M484_3044 PF17191 RecG wedge domain M484_3045 PF12105 SpoU, rRNA methylase, C-terminal M484_3045 PF00588 SpoU rRNA Methylase family M484_3046 PF13291 ACT domain M484_3046 PF04607 Region found in RelA / SpoT proteins M484_3046 PF02824 TGS domain M484_3047 PF01192 RNA polymerase Rpb6 M484_3048 PF00625 Guanylate kinase M484_3049 PF03120 NAD-dependent DNA ligase OB-fold domain M484_3049 PF01653 NAD-dependent DNA ligase adenylation domain M484_305 PF08534 Redoxin M484_3050 PF03458 UPF0126 domain M484_3051 PF08340 Domain of unknown function (DUF1732) M484_3051 PF03755 YicC-like family, N-terminal region M484_3052 PF01138 3' exoribonuclease family, domain 1 M484_3052 PF03725 3' exoribonuclease family, domain 2 M484_3053 PF00156 Phosphoribosyl transferase domain M484_3054 PF00440 Bacterial regulatory proteins, tetR family M484_3055 PF00692 dUTPase M484_3056 PF04127 DNA / pantothenate metabolism flavoprotein M484_3056 PF02441 Flavoprotein M484_3057 PF04002 RadC-like JAB domain M484_3058 PF00830 Ribosomal L28 family M484_3059 PF00471 Ribosomal protein L33 M484_306 PF03918 Cytochrome C biogenesis protein M484_3060 PF01467 Cytidylyltransferase-like M484_3061 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain M484_3061 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain M484_3061 PF06827 Zinc finger found in FPG and IleRS M484_3062 PF00535 Glycosyl transferase family 2 M484_3063 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) M484_3064 PF01075 Glycosyltransferase family 9 (heptosyltransferase) M484_3065 PF01075 Glycosyltransferase family 9 (heptosyltransferase) M484_3066 PF01370 NAD dependent epimerase/dehydratase family M484_3067 PF00155 Aminotransferase class I and II M484_3068 PF08240 Alcohol dehydrogenase GroES-like domain M484_3068 PF00107 Zinc-binding dehydrogenase M484_3069 PF04748 Divergent polysaccharide deacetylase M484_307 PF03918 Cytochrome C biogenesis protein M484_3070 PF04748 Divergent polysaccharide deacetylase M484_3071 PF01551 Peptidase family M23 M484_3072 PF06415 BPG-independent PGAM N-terminus (iPGM_N) M484_3072 PF01676 Metalloenzyme superfamily M484_3073 PF00581 Rhodanese-like domain M484_3074 PF00462 Glutaredoxin M484_3075 PF02556 Preprotein translocase subunit SecB M484_3076 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus M484_3076 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus M484_3077 PF06426 Serine acetyltransferase, N-terminal M484_3077 PF00132 Bacterial transferase hexapeptide (six repeats) M484_3078 PF00588 SpoU rRNA Methylase family M484_3079 PF02805 Metal binding domain of Ada M484_3079 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain M484_3079 PF12833 Helix-turn-helix domain M484_3079 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain M484_308 PF04333 MlaA lipoprotein M484_3080 PF00512 His Kinase A (phospho-acceptor) domain M484_3080 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M484_3080 PF16527 Two-component sensor protein CpxA, periplasmic domain M484_3080 PF00672 HAMP domain M484_3081 PF00072 Response regulator receiver domain M484_3081 PF00486 Transcriptional regulatory protein, C terminal M484_3082 PF07813 LTXXQ motif family protein M484_3083 PF04754 Putative transposase, YhgA-like M484_3084 PF16916 Dimerisation domain of Zinc Transporter M484_3084 PF01545 Cation efflux family M484_3085 PF00365 Phosphofructokinase M484_3089 PF00939 Sodium:sulfate symporter transmembrane region M484_309 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) M484_3090 PF00939 Sodium:sulfate symporter transmembrane region M484_3091 PF03737 Aldolase/RraA M484_3092 PF02585 GlcNAc-PI de-N-acetylase M484_3093 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M484_3093 PF03466 LysR substrate binding domain M484_3094 PF00121 Triosephosphate isomerase M484_3095 PF07305 Protein of unknown function (DUF1454) M484_3096 PF05656 Protein of unknown function (DUF805) M484_3097 PF00175 Oxidoreductase NAD-binding domain M484_3097 PF00970 Oxidoreductase FAD-binding domain M484_3098 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded M484_3099 PF00370 FGGY family of carbohydrate kinases, N-terminal domain M484_3099 PF02782 FGGY family of carbohydrate kinases, C-terminal domain M484_31 PF00753 Metallo-beta-lactamase superfamily M484_310 PF04175 Protein of unknown function (DUF406) M484_3100 PF00230 Major intrinsic protein M484_3101 PF06005 Cell division protein ZapB M484_3102 PF01797 Transposase IS200 like M484_3103 PF00664 ABC transporter transmembrane region M484_3103 PF03412 Peptidase C39 family M484_3103 PF00005 ABC transporter M484_3104 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion M484_3104 PF00529 HlyD membrane-fusion protein of T1SS M484_3107 PF03737 Aldolase/RraA M484_3108 PF01040 UbiA prenyltransferase family M484_3109 PF10431 C-terminal, D2-small domain, of ClpB protein M484_3109 PF00004 ATPase family associated with various cellular activities (AAA) M484_3109 PF07724 AAA domain (Cdc48 subfamily) M484_311 PF00108 Thiolase, N-terminal domain M484_311 PF02803 Thiolase, C-terminal domain M484_3110 PF00227 Proteasome subunit M484_3111 PF05036 Sporulation related domain M484_3112 PF00356 Bacterial regulatory proteins, lacI family M484_3114 PF00270 DEAD/DEAH box helicase M484_3114 PF00271 Helicase conserved C-terminal domain M484_3114 PF17764 3′ DNA-binding domain (3′BD) M484_3114 PF18319 PriA DNA helicase Cys-rich region (CRR) domain M484_3114 PF18074 Primosomal protein N C-terminal domain M484_3115 PF01197 Ribosomal protein L31 M484_3116 PF05360 yiaA/B two helix domain M484_3117 PF01340 Met Apo-repressor, MetJ M484_3118 PF01053 Cys/Met metabolism PLP-dependent enzyme M484_3119 PF03447 Homoserine dehydrogenase, NAD binding domain M484_3119 PF00696 Amino acid kinase family M484_3119 PF00742 Homoserine dehydrogenase M484_312 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain M484_312 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain M484_312 PF00378 Enoyl-CoA hydratase/isomerase M484_3120 PF02219 Methylenetetrahydrofolate reductase M484_3121 PF00665 Integrase core domain M484_3121 PF13333 Integrase core domain M484_3121 PF13276 HTH-like domain M484_3123 PF01757 Acyltransferase family M484_3124 PF00419 Fimbrial protein M484_3125 PF13953 PapC C-terminal domain M484_3125 PF00577 Outer membrane usher protein M484_3125 PF13954 PapC N-terminal domain M484_3126 PF13953 PapC C-terminal domain M484_3126 PF13954 PapC N-terminal domain M484_3126 PF00577 Outer membrane usher protein M484_3127 PF02753 Pili assembly chaperone PapD, C-terminal domain M484_3127 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain M484_3129 PF02782 FGGY family of carbohydrate kinases, C-terminal domain M484_3129 PF00370 FGGY family of carbohydrate kinases, N-terminal domain M484_313 PF00300 Histidine phosphatase superfamily (branch 1) M484_3131 PF13407 Periplasmic binding protein domain M484_3132 PF00005 ABC transporter M484_3133 PF02653 Branched-chain amino acid transport system / permease component M484_3134 PF12833 Helix-turn-helix domain M484_3136 PF00589 Phage integrase family M484_3136 PF13356 Arm DNA-binding domain M484_3136 PF14659 Phage integrase, N-terminal SAM-like domain M484_3138 PF04606 Ogr/Delta-like zinc finger M484_3139 PF13737 Transposase DDE domain M484_314 PF01713 Smr domain M484_3140 PF13737 Transposase DDE domain M484_3143 PF00005 ABC transporter M484_3145 PF01032 FecCD transport family M484_3146 PF01032 FecCD transport family M484_3147 PF01497 Periplasmic binding protein M484_315 PF05175 Methyltransferase small domain M484_3150 PF00156 Phosphoribosyl transferase domain M484_3151 PF00291 Pyridoxal-phosphate dependent enzyme M484_3152 PF17392 Urocanase C-terminal domain M484_3152 PF17391 Urocanase N-terminal domain M484_3152 PF01175 Urocanase Rossmann-like domain M484_3153 PF00221 Aromatic amino acid lyase M484_3154 PF00324 Amino acid permease M484_3155 PF12146 Serine aminopeptidase, S33 M484_3156 PF00665 Integrase core domain M484_3156 PF02796 Helix-turn-helix domain of resolvase M484_3157 PF01695 IstB-like ATP binding protein M484_3158 PF01695 IstB-like ATP binding protein M484_316 PF01264 Chorismate synthase M484_3163 PF03143 Elongation factor Tu C-terminal domain M484_3163 PF03144 Elongation factor Tu domain 2 M484_3163 PF00009 Elongation factor Tu GTP binding domain M484_3164 PF00584 SecE/Sec61-gamma subunits of protein translocation complex M484_3165 PF02357 Transcription termination factor nusG M484_3165 PF00467 KOW motif M484_3166 PF00298 Ribosomal protein L11, RNA binding domain M484_3166 PF03946 Ribosomal protein L11, N-terminal domain M484_3167 PF00687 Ribosomal protein L1p/L10e family M484_3168 PF00466 Ribosomal protein L10 M484_3169 PF16320 Ribosomal protein L7/L12 dimerisation domain M484_3169 PF00542 Ribosomal protein L7/L12 C-terminal domain M484_317 PF03411 Penicillin-insensitive murein endopeptidase M484_3171 PF00562 RNA polymerase Rpb2, domain 6 M484_3171 PF10385 RNA polymerase beta subunit external 1 domain M484_3171 PF04565 RNA polymerase Rpb2, domain 3 M484_3171 PF04561 RNA polymerase Rpb2, domain 2 M484_3171 PF04563 RNA polymerase beta subunit M484_3171 PF04560 RNA polymerase Rpb2, domain 7 M484_3172 PF04998 RNA polymerase Rpb1, domain 5 M484_3172 PF05000 RNA polymerase Rpb1, domain 4 M484_3172 PF00623 RNA polymerase Rpb1, domain 2 M484_3172 PF04997 RNA polymerase Rpb1, domain 1 M484_3172 PF04983 RNA polymerase Rpb1, domain 3 M484_3173 PF04055 Radical SAM superfamily M484_3173 PF06968 Biotin and Thiamin Synthesis associated domain M484_3174 PF06968 Biotin and Thiamin Synthesis associated domain M484_3174 PF04055 Radical SAM superfamily M484_3175 PF05690 Thiazole biosynthesis protein ThiG M484_3176 PF05690 Thiazole biosynthesis protein ThiG M484_3178 PF00899 ThiF family M484_3179 PF02581 Thiamine monophosphate synthase M484_318 PF01925 Sulfite exporter TauE/SafE M484_3180 PF13667 ThiC-associated domain M484_3180 PF01964 Radical SAM ThiC family M484_3181 PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ M484_3182 PF00293 NUDIX domain M484_3182 PF09297 NADH pyrophosphatase zinc ribbon domain M484_3184 PF01208 Uroporphyrinogen decarboxylase (URO-D) M484_3185 PF04493 Endonuclease V M484_3186 PF04222 Protein of unknown function (DUF416) M484_3187 PF00216 Bacterial DNA-binding protein M484_3188 PF07356 Protein of unknown function (DUF1481) M484_3189 PF02843 Phosphoribosylglycinamide synthetase, C domain M484_3189 PF02844 Phosphoribosylglycinamide synthetase, N domain M484_3189 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain M484_319 PF04315 Elongation factor P hydroxylase M484_3190 PF01808 AICARFT/IMPCHase bienzyme M484_3190 PF02142 MGS-like domain M484_3199 PF13407 Periplasmic binding protein domain M484_32 PF00155 Aminotransferase class I and II M484_320 PF08891 YfcL protein M484_3200 PF00005 ABC transporter M484_3201 PF02653 Branched-chain amino acid transport system / permease component M484_3202 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M484_3202 PF03466 LysR substrate binding domain M484_3203 PF02653 Branched-chain amino acid transport system / permease component M484_3204 PF04219 Protein of unknown function, DUF M484_3205 PF13335 Magnesium chelatase, subunit ChlI C-terminal M484_3205 PF01078 Magnesium chelatase, subunit ChlI M484_3206 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain M484_3206 PF00205 Thiamine pyrophosphate enzyme, central domain M484_3206 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain M484_3208 PF01063 Amino-transferase class IV M484_3209 PF00920 Dehydratase family M484_321 PF05430 S-adenosyl-L-methionine-dependent methyltransferase M484_321 PF01266 FAD dependent oxidoreductase M484_3210 PF00291 Pyridoxal-phosphate dependent enzyme M484_3210 PF00585 C-terminal regulatory domain of Threonine dehydratase M484_3216 PF03466 LysR substrate binding domain M484_3216 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M484_3217 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain M484_3217 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain M484_322 PF02801 Beta-ketoacyl synthase, C-terminal domain M484_322 PF00109 Beta-ketoacyl synthase, N-terminal domain M484_3222 PF01320 Colicin immunity protein / pyocin immunity protein M484_3223 PF02753 Pili assembly chaperone PapD, C-terminal domain M484_3223 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain M484_3225 PF00577 Outer membrane usher protein M484_3225 PF13954 PapC N-terminal domain M484_3225 PF13953 PapC C-terminal domain M484_3226 PF02753 Pili assembly chaperone PapD, C-terminal domain M484_3226 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain M484_323 PF01177 Asp/Glu/Hydantoin racemase M484_3230 PF00580 UvrD/REP helicase N-terminal domain M484_3230 PF13361 UvrD-like helicase C-terminal domain M484_3231 PF02541 Ppx/GppA phosphatase family M484_3232 PF00271 Helicase conserved C-terminal domain M484_3232 PF00270 DEAD/DEAH box helicase M484_3233 PF00085 Thioredoxin M484_3234 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain M484_3234 PF07498 Rho termination factor, N-terminal domain M484_3234 PF07497 Rho termination factor, RNA-binding domain M484_3235 PF00953 Glycosyl transferase family 4 M484_3236 PF02706 Chain length determinant protein M484_3237 PF02350 UDP-N-acetylglucosamine 2-epimerase M484_3238 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain M484_3238 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain M484_3238 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain M484_3239 PF16363 GDP-mannose 4,6 dehydratase M484_324 PF00419 Fimbrial protein M484_3240 PF00483 Nucleotidyl transferase M484_3242 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family M484_3243 PF01943 Polysaccharide biosynthesis protein M484_3244 PF07429 4-alpha-L-fucosyltransferase glycosyl transferase group 56 M484_3245 PF06899 WzyE protein, O-antigen assembly polymerase M484_3246 PF03808 Glycosyl transferase WecB/TagA/CpsF family M484_3247 PF00324 Amino acid permease M484_3253 PF01797 Transposase IS200 like M484_3254 PF07719 Tetratricopeptide repeat M484_3254 PF07219 HemY protein N-terminus M484_3255 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase M484_3256 PF02602 Uroporphyrinogen-III synthase HemD M484_3257 PF03900 Porphobilinogen deaminase, C-terminal domain M484_3257 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain M484_3258 PF01295 Adenylate cyclase, class-I M484_3258 PF12633 Adenylate cyclase NT domain M484_3259 PF01491 Frataxin-like domain M484_326 PF00892 EamA-like transporter family M484_3260 PF13627 Prokaryotic lipoprotein-attachment site M484_3261 PF01678 Diaminopimelate epimerase M484_3262 PF04340 Protein of unknown function, DUF484 M484_3263 PF00589 Phage integrase family M484_3263 PF02899 Phage integrase, N-terminal SAM-like domain M484_3264 PF13419 Haloacid dehalogenase-like hydrolase M484_3265 PF00580 UvrD/REP helicase N-terminal domain M484_3265 PF13361 UvrD-like helicase C-terminal domain M484_3268 PF09370 Phosphoenolpyruvate hydrolase-like M484_3269 PF01544 CorA-like Mg2+ transporter protein M484_3270 PF00892 EamA-like transporter family M484_3271 PF03061 Thioesterase superfamily M484_3272 PF02253 Phospholipase A1 M484_3273 PF00570 HRDC domain M484_3273 PF00270 DEAD/DEAH box helicase M484_3273 PF00271 Helicase conserved C-terminal domain M484_3273 PF16124 RecQ zinc-binding M484_3273 PF09382 RQC domain M484_3274 PF01810 LysE type translocator M484_3275 PF01810 LysE type translocator M484_3276 PF12146 Serine aminopeptidase, S33 M484_3279 PF03009 Glycerophosphoryl diester phosphodiesterase family M484_328 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain M484_328 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain M484_328 PF11890 Domain of unknown function (DUF3410) M484_3280 PF04324 BFD-like [2Fe-2S] binding domain M484_3280 PF01266 FAD dependent oxidoreductase M484_3281 PF00890 FAD binding domain M484_3282 PF02754 Cysteine-rich domain M484_3282 PF13183 4Fe-4S dicluster domain M484_3283 PF08786 DcrB M484_3284 PF02592 Putative vitamin uptake transporter M484_3285 PF01206 Sulfurtransferase TusA M484_3286 PF00403 Heavy-metal-associated domain M484_3287 PF07947 YhhN family M484_329 PF02774 Semialdehyde dehydrogenase, dimerisation domain M484_329 PF01118 Semialdehyde dehydrogenase, NAD binding domain M484_3290 PF06611 Protein of unknown function (DUF1145) M484_3292 PF00448 SRP54-type protein, GTPase domain M484_3292 PF02881 SRP54-type protein, helical bundle domain M484_3292 PF00448 SRP54-type protein, GTPase domain M484_3292 PF02881 SRP54-type protein, helical bundle domain M484_3293 PF00005 ABC transporter M484_3294 PF02687 FtsX-like permease family M484_3294 PF18075 FtsX extracellular domain M484_3295 PF00140 Sigma-70 factor, region 1.2 M484_3295 PF04542 Sigma-70 region 2 M484_3295 PF04545 Sigma-70, region 4 M484_3296 PF01797 Transposase IS200 like M484_3297 PF12568 Acetyltransferase (GNAT) domain, PanZ M484_3298 PF13458 Periplasmic binding protein M484_3299 PF02653 Branched-chain amino acid transport system / permease component M484_33 PF00267 Gram-negative porin M484_330 PF01416 tRNA pseudouridine synthase M484_3300 PF02653 Branched-chain amino acid transport system / permease component M484_3300 PF11862 Domain of unknown function (DUF3382) M484_3301 PF12399 Branched-chain amino acid ATP-binding cassette transporter M484_3301 PF00005 ABC transporter M484_3302 PF00005 ABC transporter M484_331 PF09335 SNARE associated Golgi protein M484_3310 PF13416 Bacterial extracellular solute-binding protein M484_3311 PF00528 Binding-protein-dependent transport system inner membrane component M484_3312 PF00528 Binding-protein-dependent transport system inner membrane component M484_3313 PF17912 MalK OB fold domain M484_3313 PF00005 ABC transporter M484_3314 PF03009 Glycerophosphoryl diester phosphodiesterase family M484_3315 PF03547 Membrane transport protein M484_3316 PF03466 LysR substrate binding domain M484_3316 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M484_3317 PF00892 EamA-like transporter family M484_3318 PF01717 Cobalamin-independent synthase, Catalytic domain M484_3318 PF08267 Cobalamin-independent synthase, N-terminal domain M484_3319 PF01738 Dienelactone hydrolase family M484_332 PF01039 Carboxyl transferase domain M484_332 PF17848 Acetyl-coA carboxylase zinc finger domain M484_3320 PF01048 Phosphorylase superfamily M484_3322 PF02554 Carbon starvation protein CstA M484_3322 PF13722 5TM C-terminal transporter carbon starvation CstA M484_3323 PF09335 SNARE associated Golgi protein M484_3324 PF02646 RmuC family M484_3325 PF01209 ubiE/COQ5 methyltransferase family M484_3326 PF02036 SCP-2 sterol transfer family M484_3327 PF03109 ABC1 family M484_3328 PF02416 mttA/Hcf106 family M484_333 PF02875 Mur ligase family, glutamate ligase domain M484_333 PF08245 Mur ligase middle domain M484_3330 PF00902 Sec-independent protein translocase protein (TatC) M484_3331 PF01026 TatD related DNase M484_3332 PF00490 Delta-aminolevulinic acid dehydratase M484_3333 PF02357 Transcription termination factor nusG M484_3334 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase M484_3335 PF00175 Oxidoreductase NAD-binding domain M484_3335 PF00970 Oxidoreductase FAD-binding domain M484_3336 PF02803 Thiolase, C-terminal domain M484_3336 PF00108 Thiolase, N-terminal domain M484_3337 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain M484_3337 PF00378 Enoyl-CoA hydratase/isomerase M484_3337 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain M484_3338 PF00557 Metallopeptidase family M24 M484_3339 PF01205 Uncharacterized protein family UPF0029 M484_3339 PF09186 Domain of unknown function (DUF1949) M484_334 PF05036 Sporulation related domain M484_3340 PF02386 Cation transport protein M484_3341 PF12724 Flavodoxin domain M484_3347 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain M484_3347 PF01565 FAD binding domain M484_3348 PF08279 HTH domain M484_3348 PF03099 Biotin/lipoate A/B protein ligase family M484_3348 PF02237 Biotin protein ligase C terminal domain M484_3349 PF00485 Phosphoribulokinase / Uridine kinase family M484_335 PF02674 Colicin V production protein M484_3350 PF13673 Acetyltransferase (GNAT) domain M484_3351 PF02796 Helix-turn-helix domain of resolvase M484_3351 PF00665 Integrase core domain M484_3352 PF00665 Integrase core domain M484_3352 PF02796 Helix-turn-helix domain of resolvase M484_3354 PF01695 IstB-like ATP binding protein M484_3355 PF00326 Prolyl oligopeptidase family M484_3357 PF01250 Ribosomal protein S6 M484_3358 PF01084 Ribosomal protein S18 M484_3359 PF01281 Ribosomal protein L9, N-terminal domain M484_3359 PF03948 Ribosomal protein L9, C-terminal domain M484_336 PF00156 Phosphoribosyl transferase domain M484_3360 PF01797 Transposase IS200 like M484_3362 PF04225 Opacity-associated protein A LysM-like domain M484_3362 PF08525 Opacity-associated protein A N-terminal motif M484_3363 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase M484_3363 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase M484_3364 PF01814 Hemerythrin HHE cation binding domain M484_3364 PF04405 Domain of Unknown function (DUF542) M484_3365 PF00149 Calcineurin-like phosphoesterase M484_3365 PF02872 5'-nucleotidase, C-terminal domain M484_3366 PF00459 Inositol monophosphatase family M484_3367 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) M484_3368 PF06526 Protein of unknown function (DUF1107) M484_3369 PF00571 CBS domain M484_3369 PF01595 Cyclin M transmembrane N-terminal domain M484_3369 PF03471 Transporter associated domain M484_337 PF02441 Flavoprotein M484_3370 PF01625 Peptide methionine sulfoxide reductase M484_3371 PF17243 POTRA domain TamA domain 1 M484_3371 PF01103 Surface antigen M484_3371 PF07244 Surface antigen variable number repeat M484_3372 PF04357 TamB, inner membrane protein subunit of TAM complex M484_3373 PF06094 Gamma-glutamyl cyclotransferase, AIG2-like M484_3374 PF00719 Inorganic pyrophosphatase M484_3375 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain M484_3376 PF01225 Mur ligase family, catalytic domain M484_3376 PF02875 Mur ligase family, glutamate ligase domain M484_3376 PF08245 Mur ligase middle domain M484_3378 PF01316 Arginine repressor, DNA binding domain M484_3378 PF02863 Arginine repressor, C-terminal domain M484_3379 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain M484_3379 PF00056 lactate/malate dehydrogenase, NAD binding domain M484_338 PF00497 Bacterial extracellular solute-binding proteins, family 3 M484_3380 PF13693 Winged helix-turn-helix DNA-binding M484_3382 PF00348 Polyprenyl synthetase M484_3383 PF00829 Ribosomal prokaryotic L21 protein M484_3384 PF01016 Ribosomal L27 protein M484_3385 PF00892 EamA-like transporter family M484_3386 PF01926 50S ribosome-binding GTPase M484_3386 PF01018 GTP1/OBG M484_3387 PF00672 HAMP domain M484_3387 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M484_3387 PF00512 His Kinase A (phospho-acceptor) domain M484_3388 PF00486 Transcriptional regulatory protein, C terminal M484_3388 PF00072 Response regulator receiver domain M484_3389 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family M484_339 PF00528 Binding-protein-dependent transport system inner membrane component M484_3390 PF01272 Transcription elongation factor, GreA/GreB, C-term M484_3390 PF03449 Transcription elongation factor, N-terminal M484_3391 PF01985 CRS1 / YhbY (CRM) domain M484_3392 PF01728 FtsJ-like methyltransferase M484_3393 PF00004 ATPase family associated with various cellular activities (AAA) M484_3393 PF17862 AAA+ lid domain M484_3393 PF01434 Peptidase family M41 M484_3393 PF06480 FtsH Extracellular M484_3394 PF00809 Pterin binding enzyme M484_3395 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain M484_3395 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III M484_3395 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II M484_3395 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I M484_3396 PF03840 Preprotein translocase SecG subunit M484_3399 PF02576 RimP N-terminal domain M484_3399 PF17384 RimP C-terminal SH3 domain M484_34 PF01336 OB-fold nucleic acid binding domain M484_34 PF00152 tRNA synthetases class II (D, K and N) M484_340 PF00528 Binding-protein-dependent transport system inner membrane component M484_3400 PF13184 NusA-like KH domain M484_3400 PF08529 NusA N-terminal domain M484_3400 PF00575 S1 RNA binding domain M484_3401 PF04760 Translation initiation factor IF-2, N-terminal region M484_3401 PF03144 Elongation factor Tu domain 2 M484_3401 PF08364 Bacterial translation initiation factor IF-2 associated region M484_3401 PF00009 Elongation factor Tu GTP binding domain M484_3401 PF11987 Translation-initiation factor 2 M484_3402 PF02033 Ribosome-binding factor A M484_3403 PF01509 TruB family pseudouridylate synthase (N terminal domain) M484_3403 PF16198 tRNA pseudouridylate synthase B C-terminal domain M484_3403 PF09157 Pseudouridine synthase II TruB, C-terminal M484_3404 PF00312 Ribosomal protein S15 M484_3405 PF00665 Integrase core domain M484_3405 PF13333 Integrase core domain M484_3405 PF13276 HTH-like domain M484_3407 PF00311 Phosphoenolpyruvate carboxylase M484_3408 PF01546 Peptidase family M20/M25/M40 M484_3408 PF07687 Peptidase dimerisation domain M484_3409 PF01118 Semialdehyde dehydrogenase, NAD binding domain M484_3409 PF02774 Semialdehyde dehydrogenase, dimerisation domain M484_341 PF00005 ABC transporter M484_3410 PF00696 Amino acid kinase family M484_3411 PF00206 Lyase M484_3411 PF14698 Argininosuccinate lyase C-terminal M484_3413 PF07715 TonB-dependent Receptor Plug Domain M484_3413 PF00593 TonB dependent receptor M484_3415 PF00005 ABC transporter M484_3415 PF00664 ABC transporter transmembrane region M484_3416 PF00529 HlyD membrane-fusion protein of T1SS M484_3417 PF03544 Gram-negative bacterial TonB protein C-terminal M484_3418 PF07992 Pyridine nucleotide-disulphide oxidoreductase M484_3418 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain M484_3419 PF00462 Glutaredoxin M484_3419 PF08534 Redoxin M484_342 PF08338 Domain of unknown function (DUF1731) M484_342 PF01370 NAD dependent epimerase/dehydratase family M484_3420 PF07992 Pyridine nucleotide-disulphide oxidoreductase M484_3420 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain M484_3421 PF03466 LysR substrate binding domain M484_3421 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M484_3423 PF00440 Bacterial regulatory proteins, tetR family M484_3424 PF07226 Protein of unknown function (DUF1422) M484_3425 PF05958 tRNA (Uracil-5-)-methyltransferase M484_3426 PF07715 TonB-dependent Receptor Plug Domain M484_3426 PF00593 TonB dependent receptor M484_3427 PF01177 Asp/Glu/Hydantoin racemase M484_3433 PF10043 Predicted periplasmic lipoprotein (DUF2279) M484_3434 PF13091 PLD-like domain M484_3435 PF13607 Succinyl-CoA ligase like flavodoxin domain M484_3435 PF00583 Acetyltransferase (GNAT) family M484_3435 PF13380 CoA binding domain M484_3437 PF00085 Thioredoxin M484_3438 PF00588 SpoU rRNA Methylase family M484_3438 PF08032 RNA 2'-O ribose methyltransferase substrate binding M484_3439 PF07690 Major Facilitator Superfamily M484_344 PF12850 Calcineurin-like phosphoesterase superfamily domain M484_3440 PF00529 HlyD membrane-fusion protein of T1SS M484_3440 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion M484_3441 PF01047 MarR family M484_3442 PF05437 Branched-chain amino acid transport protein (AzlD) M484_3443 PF03591 AzlC protein M484_3444 PF07690 Major Facilitator Superfamily M484_3446 PF01425 Amidase M484_3449 PF00497 Bacterial extracellular solute-binding proteins, family 3 M484_345 PF12850 Calcineurin-like phosphoesterase superfamily domain M484_3450 PF00528 Binding-protein-dependent transport system inner membrane component M484_3452 PF00005 ABC transporter M484_3453 PF00266 Aminotransferase class-V M484_3454 PF01695 IstB-like ATP binding protein M484_3455 PF00665 Integrase core domain M484_3455 PF02796 Helix-turn-helix domain of resolvase M484_3456 PF00266 Aminotransferase class-V M484_3457 PF07687 Peptidase dimerisation domain M484_3457 PF01546 Peptidase family M20/M25/M40 M484_3458 PF00795 Carbon-nitrogen hydrolase M484_3459 PF00155 Aminotransferase class I and II M484_346 PF00293 NUDIX domain M484_3460 PF00596 Class II Aldolase and Adducin N-terminal domain M484_3462 PF03079 ARD/ARD' family M484_3463 PF01008 Initiation factor 2 subunit family M484_3464 PF01636 Phosphotransferase enzyme family M484_3465 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB M484_3465 PF08479 POTRA domain, ShlB-type M484_3466 PF05860 haemagglutination activity domain M484_3467 PF18071 HMW1C N-terminal M484_3467 PF18254 HMW1 domain 2 M484_3469 PF01797 Transposase IS200 like M484_347 PF03611 PTS system sugar-specific permease component M484_3470 PF09317 Domain of unknown function (DUF1974) M484_3470 PF02771 Acyl-CoA dehydrogenase, N-terminal domain M484_3470 PF00441 Acyl-CoA dehydrogenase, C-terminal domain M484_3471 PF13580 SIS domain M484_3472 PF03734 L,D-transpeptidase catalytic domain M484_3473 PF13230 Glutamine amidotransferases class-II M484_3474 PF11973 NQRA C-terminal domain M484_3474 PF05896 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) M484_3475 PF03116 NQR2, RnfD, RnfE family M484_3476 PF04205 FMN-binding domain M484_3477 PF02508 Rnf-Nqr subunit, membrane protein M484_3478 PF02508 Rnf-Nqr subunit, membrane protein M484_3479 PF00970 Oxidoreductase FAD-binding domain M484_3479 PF00111 2Fe-2S iron-sulfur cluster binding domain M484_3479 PF00175 Oxidoreductase NAD-binding domain M484_3480 PF02424 ApbE family M484_3482 PF03009 Glycerophosphoryl diester phosphodiesterase family M484_3483 PF11799 impB/mucB/samB family C-terminal domain M484_3483 PF00817 impB/mucB/samB family M484_3483 PF11798 IMS family HHH motif M484_3484 PF07687 Peptidase dimerisation domain M484_3484 PF01546 Peptidase family M20/M25/M40 M484_3488 PF00156 Phosphoribosyl transferase domain M484_349 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 M484_3490 PF07417 Sigma factor-binding transcriptional regulator Crl M484_3491 PF00696 Amino acid kinase family M484_3491 PF01472 PUA domain M484_3492 PF00171 Aldehyde dehydrogenase family M484_3493 PF07317 Flagellar regulator YcgR M484_3493 PF07238 PilZ domain M484_3495 PF08241 Methyltransferase domain M484_3497 PF01202 Shikimate kinase M484_3498 PF06865 Pyrimidine/purine nucleoside phosphorylase M484_3499 PF04381 Putative exonuclease, RdgC M484_35 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain M484_35 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family M484_350 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family M484_350 PF00356 Bacterial regulatory proteins, lacI family M484_3500 PF00480 ROK family M484_3501 PF13476 AAA domain M484_3502 PF00149 Calcineurin-like phosphoesterase M484_3502 PF12320 Type 5 capsule protein repressor C-terminal domain M484_3503 PF00486 Transcriptional regulatory protein, C terminal M484_3503 PF00072 Response regulator receiver domain M484_3504 PF01797 Transposase IS200 like M484_3505 PF00486 Transcriptional regulatory protein, C terminal M484_3505 PF00072 Response regulator receiver domain M484_3506 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M484_3506 PF11808 Phosphate regulon sensor protein PhoR M484_3506 PF00989 PAS fold M484_3506 PF00512 His Kinase A (phospho-acceptor) domain M484_3507 PF12849 PBP superfamily domain M484_3508 PF05525 Branched-chain amino acid transport protein M484_3509 PF00324 Amino acid permease M484_351 PF07085 DRTGG domain M484_351 PF01515 Phosphate acetyl/butaryl transferase M484_3510 PF00128 Alpha amylase, catalytic domain M484_3510 PF02903 Alpha amylase, N-terminal ig-like domain M484_3514 PF10417 C-terminal domain of 1-Cys peroxiredoxin M484_3514 PF00578 AhpC/TSA family M484_3515 PF04336 Acyl carrier protein phosphodiesterase M484_3516 PF02547 Queuosine biosynthesis protein M484_3517 PF01702 Queuine tRNA-ribosyltransferase M484_3518 PF02699 Preprotein translocase subunit M484_3519 PF13721 SecD export protein N-terminal TM region M484_3519 PF07549 SecD/SecF GG Motif M484_3519 PF02355 Protein export membrane protein M484_352 PF00871 Acetokinase family M484_3520 PF02355 Protein export membrane protein M484_3520 PF07549 SecD/SecF GG Motif M484_3521 PF01797 Transposase IS200 like M484_3524 PF03477 ATP cone domain M484_3525 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region M484_3525 PF01872 RibD C-terminal domain M484_3526 PF00885 6,7-dimethyl-8-ribityllumazine synthase M484_3527 PF01029 NusB family M484_3528 PF02769 AIR synthase related protein, C-terminal domain M484_3528 PF00586 AIR synthase related protein, N-terminal domain M484_3529 PF04608 Phosphatidylglycerophosphatase A M484_353 PF04217 Protein of unknown function, DUF412 M484_3530 PF01797 Transposase IS200 like M484_3531 PF13292 1-deoxy-D-xylulose-5-phosphate synthase M484_3531 PF02779 Transketolase, pyrimidine binding domain M484_3531 PF02780 Transketolase, C-terminal domain M484_3532 PF00348 Polyprenyl synthetase M484_3533 PF02609 Exonuclease VII small subunit M484_3534 PF02926 THUMP domain M484_3534 PF02568 Thiamine biosynthesis protein (ThiI) M484_3535 PF01965 DJ-1/PfpI family M484_3536 PF08546 Ketopantoate reductase PanE/ApbA C terminal M484_3536 PF02558 Ketopantoate reductase PanE/ApbA M484_3537 PF04461 Protein of unknown function (DUF520) M484_3538 PF07690 Major Facilitator Superfamily M484_3539 PF01040 UbiA prenyltransferase family M484_354 PF03887 YfbU domain M484_3540 PF03626 Prokaryotic Cytochrome C oxidase subunit IV M484_3541 PF00510 Cytochrome c oxidase subunit III M484_3542 PF00115 Cytochrome C and Quinol oxidase polypeptide I M484_3543 PF06481 COX Aromatic Rich Motif M484_3543 PF00116 Cytochrome C oxidase subunit II, periplasmic domain M484_3544 PF03502 Nucleoside-specific channel-forming protein, Tsx M484_3545 PF07690 Major Facilitator Superfamily M484_3546 PF03923 Uncharacterized lipoprotein M484_3546 PF08139 Prokaryotic membrane lipoprotein lipid attachment site M484_3547 PF01722 BolA-like protein M484_3549 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase M484_3549 PF05698 Bacterial trigger factor protein (TF) C-terminus M484_3549 PF05697 Bacterial trigger factor protein (TF) M484_355 PF13419 Haloacid dehalogenase-like hydrolase M484_3550 PF00574 Clp protease M484_3551 PF10431 C-terminal, D2-small domain, of ClpB protein M484_3551 PF06689 ClpX C4-type zinc finger M484_3551 PF07724 AAA domain (Cdc48 subfamily) M484_3552 PF02190 ATP-dependent protease La (LON) substrate-binding domain M484_3552 PF05362 Lon protease (S16) C-terminal proteolytic domain M484_3552 PF00004 ATPase family associated with various cellular activities (AAA) M484_3553 PF00216 Bacterial DNA-binding protein M484_3555 PF01797 Transposase IS200 like M484_3556 PF13145 PPIC-type PPIASE domain M484_3559 PF06508 Queuosine biosynthesis protein QueC M484_356 PF03600 Citrate transporter M484_356 PF02080 TrkA-C domain M484_3560 PF12793 Sugar transport-related sRNA regulator N-term M484_3560 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle M484_3562 PF00291 Pyridoxal-phosphate dependent enzyme M484_3563 PF13404 AsnC-type helix-turn-helix domain M484_3563 PF01037 Lrp/AsnC ligand binding domain M484_3564 PF00664 ABC transporter transmembrane region M484_3564 PF00005 ABC transporter M484_3565 PF00005 ABC transporter M484_3565 PF00664 ABC transporter transmembrane region M484_3566 PF00543 Nitrogen regulatory protein P-II M484_3567 PF00909 Ammonium Transporter Family M484_3569 PF09619 Type III secretion system lipoprotein chaperone (YscW) M484_3570 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain M484_3571 PF05321 Haemolysin expression modulating protein M484_3572 PF10757 Biofilm formation regulator YbaJ M484_3574 PF00444 Ribosomal protein L36 M484_3575 PF01197 Ribosomal protein L31 M484_3576 PF00873 AcrB/AcrD/AcrF family M484_3577 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion M484_3577 PF00529 HlyD membrane-fusion protein of T1SS M484_3578 PF08361 MAATS-type transcriptional repressor, C-terminal region M484_3578 PF00440 Bacterial regulatory proteins, tetR family M484_3579 PF02635 DsrE/DsrF-like family M484_358 PF00155 Aminotransferase class I and II M484_3580 PF12795 Mechanosensitive ion channel porin domain M484_3580 PF00924 Mechanosensitive ion channel M484_3580 PF12794 Mechanosensitive ion channel inner membrane domain 1 M484_3582 PF04304 Protein of unknown function (DUF454) M484_3583 PF00156 Phosphoribosyl transferase domain M484_3584 PF12169 DNA polymerase III subunits gamma and tau domain III M484_3584 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding M484_3584 PF12170 DNA polymerase III tau subunit V interacting with alpha M484_3585 PF02575 YbaB/EbfC DNA-binding family M484_3586 PF13662 Toprim domain M484_3586 PF02132 RecR protein M484_3587 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M484_3587 PF00183 Hsp90 protein M484_3588 PF05191 Adenylate kinase, active site lid M484_3589 PF00762 Ferrochelatase M484_359 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M484_359 PF03466 LysR substrate binding domain M484_3590 PF00111 2Fe-2S iron-sulfur cluster binding domain M484_3590 PF00175 Oxidoreductase NAD-binding domain M484_3590 PF00970 Oxidoreductase FAD-binding domain M484_3591 PF00483 Nucleotidyl transferase M484_3592 PF16363 GDP-mannose 4,6 dehydratase M484_3593 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family M484_3594 PF01370 NAD dependent epimerase/dehydratase family M484_36 PF11940 Domain of unknown function (DUF3458) Ig-like fold M484_36 PF01433 Peptidase family M1 domain M484_36 PF17432 Domain of unknown function (DUF3458_C) ARM repeats M484_360 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 M484_3601 PF13439 Glycosyltransferase Family 4 M484_3601 PF00534 Glycosyl transferases group 1 M484_3602 PF16363 GDP-mannose 4,6 dehydratase M484_3603 PF16363 GDP-mannose 4,6 dehydratase M484_3604 PF01370 NAD dependent epimerase/dehydratase family M484_3605 PF00483 Nucleotidyl transferase M484_3605 PF01050 Mannose-6-phosphate isomerase M484_3606 PF00535 Glycosyl transferase family 2 M484_3607 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III M484_3607 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain M484_3607 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I M484_3607 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II M484_3608 PF02706 Chain length determinant protein M484_3609 PF00294 pfkB family carbohydrate kinase M484_361 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit M484_3610 PF02254 TrkA-N domain M484_3610 PF00999 Sodium/hydrogen exchanger family M484_3611 PF07690 Major Facilitator Superfamily M484_3612 PF07690 Major Facilitator Superfamily M484_3613 PF02872 5'-nucleotidase, C-terminal domain M484_3613 PF00149 Calcineurin-like phosphoesterase M484_3614 PF02872 5'-nucleotidase, C-terminal domain M484_3614 PF00149 Calcineurin-like phosphoesterase M484_3615 PF02872 5'-nucleotidase, C-terminal domain M484_3615 PF00149 Calcineurin-like phosphoesterase M484_3618 PF04073 Aminoacyl-tRNA editing domain M484_3619 PF01963 TraB family M484_362 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit M484_362 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit M484_3620 PF00403 Heavy-metal-associated domain M484_3621 PF13411 MerR HTH family regulatory protein M484_3622 PF01957 NfeD-like C-terminal, partner-binding M484_3623 PF16200 C-terminal region of band_7 M484_3623 PF01145 SPFH domain / Band 7 family M484_3624 PF00085 Thioredoxin M484_3625 PF00106 short chain dehydrogenase M484_3626 PF13472 GDSL-like Lipase/Acylhydrolase family M484_3627 PF00005 ABC transporter M484_3629 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain M484_3629 PF02222 ATP-grasp domain M484_3630 PF00731 AIR carboxylase M484_3631 PF00149 Calcineurin-like phosphoesterase M484_3632 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD M484_3633 PF09190 DALR domain M484_3633 PF01406 tRNA synthetases class I (C) catalytic domain M484_3635 PF01797 Transposase IS200 like M484_3637 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain M484_3637 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain M484_364 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit M484_364 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region M484_364 PF10531 SLBB domain M484_3643 PF01066 CDP-alcohol phosphatidyltransferase M484_3645 PF01553 Acyltransferase M484_3646 PF12147 Putative methyltransferase M484_3646 PF12146 Serine aminopeptidase, S33 M484_3647 PF00782 Dual specificity phosphatase, catalytic domain M484_365 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region M484_365 PF00384 Molybdopterin oxidoreductase M484_365 PF04879 Molybdopterin oxidoreductase Fe4S4 domain M484_365 PF01568 Molydopterin dinucleotide binding domain M484_3650 PF01695 IstB-like ATP binding protein M484_3651 PF00665 Integrase core domain M484_3651 PF02796 Helix-turn-helix domain of resolvase M484_3652 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M484_3652 PF03466 LysR substrate binding domain M484_3653 PF00248 Aldo/keto reductase family M484_3654 PF00248 Aldo/keto reductase family M484_3659 PF00872 Transposase, Mutator family M484_366 PF00146 NADH dehydrogenase M484_3660 PF00872 Transposase, Mutator family M484_3661 PF08007 Cupin superfamily protein M484_3663 PF03797 Autotransporter beta-domain M484_3663 PF16168 Adhesin of bacterial autotransporter system, probable stalk M484_3663 PF13018 Extended Signal Peptide of Type V secretion system M484_3663 PF03212 Pertactin M484_3666 PF05638 Type VI secretion system effector, Hcp M484_367 PF12838 4Fe-4S dicluster domain M484_3670 PF13693 Winged helix-turn-helix DNA-binding M484_3671 PF00912 Transglycosylase M484_3671 PF06832 Penicillin-Binding Protein C-terminus Family M484_3671 PF00905 Penicillin binding protein transpeptidase domain M484_3672 PF17973 Bacterial Alpha-2-macroglobulin MG10 domain M484_3672 PF07703 Alpha-2-macroglobulin bait region domain M484_3672 PF00207 Alpha-2-macroglobulin family M484_3672 PF17972 Bacterial Alpha-2-macroglobulin MG5 domain M484_3672 PF01835 MG2 domain M484_3672 PF17962 Bacterial macroglobulin domain 6 M484_3672 PF11974 Bacterial alpha-2-macroglobulin MG3 domain M484_3677 PF00171 Aldehyde dehydrogenase family M484_3678 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain M484_3678 PF00205 Thiamine pyrophosphate enzyme, central domain M484_3678 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain M484_3679 PF01408 Oxidoreductase family, NAD-binding Rossmann fold M484_3679 PF02894 Oxidoreductase family, C-terminal alpha/beta domain M484_368 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 M484_3680 PF01408 Oxidoreductase family, NAD-binding Rossmann fold M484_3680 PF02894 Oxidoreductase family, C-terminal alpha/beta domain M484_3681 PF13407 Periplasmic binding protein domain M484_3682 PF00005 ABC transporter M484_3683 PF02653 Branched-chain amino acid transport system / permease component M484_3684 PF01408 Oxidoreductase family, NAD-binding Rossmann fold M484_3684 PF02894 Oxidoreductase family, C-terminal alpha/beta domain M484_3685 PF00294 pfkB family carbohydrate kinase M484_3686 PF01261 Xylose isomerase-like TIM barrel M484_3687 PF04962 KduI/IolB family M484_3689 PF00005 ABC transporter M484_3689 PF00664 ABC transporter transmembrane region M484_369 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L M484_3694 PF00196 Bacterial regulatory proteins, luxR family M484_3695 PF00313 'Cold-shock' DNA-binding domain M484_3696 PF00313 'Cold-shock' DNA-binding domain M484_3697 PF02537 CrcB-like protein, Camphor Resistance (CrcB) M484_3698 PF02416 mttA/Hcf106 family M484_3699 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family M484_3699 PF04055 Radical SAM superfamily M484_37 PF01180 Dihydroorotate dehydrogenase M484_370 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus M484_370 PF00361 Proton-conducting membrane transporter M484_3700 PF03099 Biotin/lipoate A/B protein ligase family M484_3701 PF04359 Protein of unknown function (DUF493) M484_3702 PF00768 D-alanyl-D-alanine carboxypeptidase M484_3702 PF07943 Penicillin-binding protein 5, C-terminal domain M484_3703 PF05036 Sporulation related domain M484_3703 PF03330 Lytic transglycolase M484_3704 PF01098 Cell cycle protein M484_3705 PF03717 Penicillin-binding Protein dimerisation domain M484_3705 PF00905 Penicillin binding protein transpeptidase domain M484_3706 PF02590 Predicted SPOUT methyltransferase M484_3708 PF01467 Cytidylyltransferase-like M484_3709 PF14840 Processivity clamp loader gamma complex DNA pol III C-term M484_3709 PF06144 DNA polymerase III, delta subunit M484_371 PF00361 Proton-conducting membrane transporter M484_3710 PF04390 Lipopolysaccharide-assembly M484_3711 PF00133 tRNA synthetases class I (I, L, M and V) M484_3711 PF13603 Leucyl-tRNA synthetase, Domain 2 M484_3711 PF08264 Anticodon-binding domain of tRNA M484_3712 PF07295 Zinc-ribbon containing domain M484_3713 PF00005 ABC transporter M484_3714 PF00528 Binding-protein-dependent transport system inner membrane component M484_3715 PF00528 Binding-protein-dependent transport system inner membrane component M484_3716 PF00497 Bacterial extracellular solute-binding proteins, family 3 M484_3717 PF00795 Carbon-nitrogen hydrolase M484_3718 PF03471 Transporter associated domain M484_3718 PF00571 CBS domain M484_3719 PF02130 Uncharacterized protein family UPF0054 M484_372 PF00361 Proton-conducting membrane transporter M484_3720 PF02562 PhoH-like protein M484_3721 PF00919 Uncharacterized protein family UPF0004 M484_3721 PF01938 TRAM domain M484_3721 PF04055 Radical SAM superfamily M484_3722 PF01494 FAD binding domain M484_3728 PF00733 Asparagine synthase M484_3728 PF13537 Glutamine amidotransferase domain M484_3729 PF13344 Haloacid dehalogenase-like hydrolase M484_3730 PF00480 ROK family M484_3730 PF01047 MarR family M484_3731 PF01979 Amidohydrolase family M484_3732 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase M484_3733 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 M484_3733 PF02378 Phosphotransferase system, EIIC M484_3733 PF00367 phosphotransferase system, EIIB M484_3734 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain M484_3734 PF00749 tRNA synthetases class I (E and Q), catalytic domain M484_3735 PF03573 outer membrane porin, OprD family M484_3736 PF03173 Putative carbohydrate binding domain M484_3736 PF03174 Chitobiase/beta-hexosaminidase C-terminal domain M484_3736 PF00728 Glycosyl hydrolase family 20, catalytic domain M484_3736 PF02838 Glycosyl hydrolase family 20, domain 2 M484_3737 PF00728 Glycosyl hydrolase family 20, catalytic domain M484_3737 PF03173 Putative carbohydrate binding domain M484_3737 PF03174 Chitobiase/beta-hexosaminidase C-terminal domain M484_3737 PF02838 Glycosyl hydrolase family 20, domain 2 M484_3738 PF01475 Ferric uptake regulator family M484_3739 PF00258 Flavodoxin M484_374 PF04074 YhcH/YjgK/YiaL M484_3740 PF01402 Ribbon-helix-helix protein, copG family M484_3742 PF12697 Alpha/beta hydrolase family M484_3744 PF01527 Transposase M484_3745 PF00589 Phage integrase family M484_3745 PF13356 Arm DNA-binding domain M484_3746 PF01695 IstB-like ATP binding protein M484_3747 PF00665 Integrase core domain M484_3747 PF02796 Helix-turn-helix domain of resolvase M484_3749 PF05973 Phage derived protein Gp49-like (DUF891) M484_375 PF01202 Shikimate kinase M484_3759 PF13356 Arm DNA-binding domain M484_3759 PF00589 Phage integrase family M484_376 PF00106 short chain dehydrogenase M484_3760 PF01797 Transposase IS200 like M484_3761 PF01668 SmpB protein M484_3762 PF03364 Polyketide cyclase / dehydrase and lipid transport M484_3763 PF03658 RnfH family Ubiquitin M484_3764 PF04355 SmpA / OmlA family M484_3765 PF02463 RecF/RecN/SMC N terminal domain M484_3766 PF01513 ATP-NAD kinase M484_3767 PF01025 GrpE M484_3768 PF00285 Citrate synthase, C-terminal domain M484_3769 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit M484_3770 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit M484_3771 PF00890 FAD binding domain M484_3771 PF02910 Fumarate reductase flavoprotein C-term M484_3772 PF13085 2Fe-2S iron-sulfur cluster binding domain M484_3773 PF16870 2-oxoglutarate dehydrogenase C-terminal M484_3773 PF00676 Dehydrogenase E1 component M484_3773 PF16078 2-oxoglutarate dehydrogenase N-terminus M484_3773 PF02779 Transketolase, pyrimidine binding domain M484_3774 PF00364 Biotin-requiring enzyme M484_3774 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) M484_3774 PF02817 e3 binding domain M484_3775 PF08442 ATP-grasp domain M484_3775 PF00549 CoA-ligase M484_3776 PF02629 CoA binding domain M484_3776 PF00549 CoA-ligase M484_3777 PF01797 Transposase IS200 like M484_3778 PF01654 Cytochrome bd terminal oxidase subunit I M484_3779 PF02322 Cytochrome bd terminal oxidase subunit II M484_378 PF00356 Bacterial regulatory proteins, lacI family M484_3780 PF08173 Membrane bound YbgT-like protein M484_3781 PF09600 Cyd operon protein YbgE (Cyd_oper_YbgE) M484_3782 PF03061 Thioesterase superfamily M484_3783 PF01618 MotA/TolQ/ExbB proton channel family M484_3784 PF02472 Biopolymer transport protein ExbD/TolR M484_3785 PF06519 TolA C-terminal M484_3785 PF06519 TolA C-terminal M484_3786 PF04052 TolB amino-terminal domain M484_3786 PF07676 WD40-like Beta Propeller Repeat M484_3787 PF00691 OmpA family M484_3788 PF16331 TolA binding protein trimerisation M484_3788 PF13174 Tetratricopeptide repeat M484_379 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain M484_379 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain M484_3792 PF02445 Quinolinate synthetase A protein M484_3793 PF04973 Nicotinamide mononucleotide transporter M484_3794 PF01545 Cation efflux family M484_3795 PF00793 DAHP synthetase I family M484_3796 PF00793 DAHP synthetase I family M484_3797 PF00300 Histidine phosphatase superfamily (branch 1) M484_3799 PF01263 Aldose 1-epimerase M484_38 PF07126 Cell-division protein ZapC M484_380 PF07690 Major Facilitator Superfamily M484_3801 PF00288 GHMP kinases N terminal domain M484_3801 PF10509 Galactokinase galactose-binding signature M484_3801 PF08544 GHMP kinases C terminal M484_3802 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain M484_3802 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain M484_3803 PF16363 GDP-mannose 4,6 dehydratase M484_3807 PF00005 ABC transporter M484_3808 PF03459 TOBE domain M484_3808 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M484_3809 PF10766 Multidrug efflux pump-associated protein AcrZ M484_381 PF03928 Haem-degrading M484_3811 PF00528 Binding-protein-dependent transport system inner membrane component M484_3812 PF03459 TOBE domain M484_3812 PF00005 ABC transporter M484_3814 PF10282 Lactonase, 7-bladed beta-propeller M484_3815 PF00202 Aminotransferase class-III M484_3816 PF04055 Radical SAM superfamily M484_3816 PF06968 Biotin and Thiamin Synthesis associated domain M484_3817 PF00155 Aminotransferase class I and II M484_3818 PF08241 Methyltransferase domain M484_382 PF00920 Dehydratase family M484_3821 PF17757 UvrB interaction domain M484_3821 PF00271 Helicase conserved C-terminal domain M484_3821 PF12344 Ultra-violet resistance protein B M484_3821 PF02151 UvrB/uvrC motif M484_3821 PF04851 Type III restriction enzyme, res subunit M484_3822 PF09905 DNA-binding protein VF530 M484_3823 PF01933 Uncharacterised protein family UPF0052 M484_3825 PF06463 Molybdenum Cofactor Synthesis C M484_3825 PF04055 Radical SAM superfamily M484_3826 PF01967 MoaC family M484_3827 PF02597 ThiS family M484_3828 PF02391 MoaE protein M484_3829 PF01027 Inhibitor of apoptosis-promoting Bax1 M484_3830 PF01797 Transposase IS200 like M484_3831 PF05199 GMC oxidoreductase M484_3831 PF00732 GMC oxidoreductase M484_3832 PF00171 Aldehyde dehydrogenase family M484_3833 PF00440 Bacterial regulatory proteins, tetR family M484_3833 PF13977 BetI-type transcriptional repressor, C-terminal M484_3834 PF02028 BCCT, betaine/carnitine/choline family transporter M484_3835 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M484_3835 PF03466 LysR substrate binding domain M484_3837 PF01048 Phosphorylase superfamily M484_3838 PF03825 Nucleoside H+ symporter M484_384 PF05957 Bacterial protein of unknown function (DUF883) M484_3840 PF01207 Dihydrouridine synthase (Dus) M484_3842 PF00768 D-alanyl-D-alanine carboxypeptidase M484_3843 PF09330 D-lactate dehydrogenase, membrane binding M484_3843 PF01565 FAD binding domain M484_3844 PF01928 CYTH domain M484_3845 PF01844 HNH endonuclease M484_3847 PF04226 Transglycosylase associated protein M484_3848 PF00005 ABC transporter M484_3850 PF00528 Binding-protein-dependent transport system inner membrane component M484_3851 PF00528 Binding-protein-dependent transport system inner membrane component M484_3852 PF07308 Protein of unknown function (DUF1456) M484_3853 PF13188 PAS domain M484_3853 PF02954 Bacterial regulatory protein, Fis family M484_3853 PF00158 Sigma-54 interaction domain M484_3854 PF02653 Branched-chain amino acid transport system / permease component M484_3855 PF02653 Branched-chain amino acid transport system / permease component M484_3856 PF00005 ABC transporter M484_3857 PF00005 ABC transporter M484_386 PF00425 chorismate binding enzyme M484_3860 PF00581 Rhodanese-like domain M484_3861 PF04069 Substrate binding domain of ABC-type glycine betaine transport system M484_3862 PF00528 Binding-protein-dependent transport system inner membrane component M484_3863 PF00005 ABC transporter M484_3864 PF00528 Binding-protein-dependent transport system inner membrane component M484_3865 PF13520 Amino acid permease M484_3866 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain M484_3866 PF01276 Orn/Lys/Arg decarboxylase, major domain M484_3866 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain M484_3867 PF00872 Transposase, Mutator family M484_3868 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain M484_3868 PF01276 Orn/Lys/Arg decarboxylase, major domain M484_3868 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain M484_387 PF16582 Middle domain of thiamine pyrophosphate M484_387 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain M484_387 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain M484_3870 PF00892 EamA-like transporter family M484_3871 PF00267 Gram-negative porin M484_3872 PF06733 DEAD_2 M484_3872 PF13307 Helicase C-terminal domain M484_3873 PF06628 Catalase-related immune-responsive M484_3873 PF00199 Catalase M484_3874 PF07437 YfaZ precursor M484_3875 PF03222 Tryptophan/tyrosine permease family M484_3876 PF00994 Probable molybdopterin binding domain M484_3877 PF03974 Ecotin M484_3878 PF00111 2Fe-2S iron-sulfur cluster binding domain M484_3879 PF00268 Ribonucleotide reductase, small chain M484_388 PF12697 Alpha/beta hydrolase family M484_3880 PF02867 Ribonucleotide reductase, barrel domain M484_3880 PF00317 Ribonucleotide reductase, all-alpha domain M484_3880 PF03477 ATP cone domain M484_3882 PF03989 DNA gyrase C-terminal domain, beta-propeller M484_3882 PF00521 DNA gyrase/topoisomerase IV, subunit A M484_3883 PF00512 His Kinase A (phospho-acceptor) domain M484_3883 PF00072 Response regulator receiver domain M484_3883 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M484_3883 PF09456 RcsC Alpha-Beta-Loop (ABL) M484_3884 PF00072 Response regulator receiver domain M484_3884 PF00196 Bacterial regulatory proteins, luxR family M484_3885 PF16359 RcsD-ABL domain M484_3885 PF01627 Hpt domain M484_3885 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M484_3886 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M484_3886 PF01627 Hpt domain M484_3886 PF16359 RcsD-ABL domain M484_3887 PF07690 Major Facilitator Superfamily M484_3888 PF07690 Major Facilitator Superfamily M484_389 PF00378 Enoyl-CoA hydratase/isomerase M484_3890 PF00267 Gram-negative porin M484_3893 PF00144 Beta-lactamase M484_3895 PF12706 Beta-lactamase superfamily domain M484_3896 PF00672 HAMP domain M484_3896 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain M484_3896 PF02743 Cache domain M484_3897 PF01278 Omptin family M484_3899 PF06183 DinI-like family M484_39 PF03476 MOSC N-terminal beta barrel domain M484_39 PF03473 MOSC domain M484_39 PF00111 2Fe-2S iron-sulfur cluster binding domain M484_390 PF13378 Enolase C-terminal domain-like M484_3900 PF00717 Peptidase S24-like M484_3900 PF01381 Helix-turn-helix M484_3901 PF06530 Phage antitermination protein Q M484_3902 PF17042 Nucleotide-binding C-terminal domain M484_3902 PF07005 Sugar-binding N-terminal domain M484_3903 PF00596 Class II Aldolase and Adducin N-terminal domain M484_3904 PF08220 DeoR-like helix-turn-helix domain M484_3904 PF00455 DeoR C terminal sensor domain M484_3905 PF01261 Xylose isomerase-like TIM barrel M484_3909 PF04984 Phage tail sheath protein subtilisin-like domain M484_3909 PF17482 Phage tail sheath C-terminal domain M484_391 PF13193 AMP-binding enzyme C-terminal domain M484_391 PF00501 AMP-binding enzyme M484_3918 PF04865 Baseplate J-like protein M484_392 PF02885 Glycosyl transferase family, helical bundle domain M484_3921 PF07484 Phage Tail Collar Domain M484_3922 PF01380 SIS domain M484_3922 PF01418 Helix-turn-helix domain, rpiR family M484_3924 PF00232 Glycosyl hydrolase family 1 M484_3928 PF05638 Type VI secretion system effector, Hcp M484_393 PF07338 Protein of unknown function (DUF1471) M484_3931 PF00884 Sulfatase M484_3931 PF11893 Domain of unknown function (DUF3413) M484_3932 PF07208 Protein of unknown function (DUF1414) M484_3933 PF04245 37-kD nucleoid-associated bacterial protein M484_3934 PF01797 Transposase IS200 like M484_3935 PF01386 Ribosomal L25p family M484_3936 PF04851 Type III restriction enzyme, res subunit M484_3936 PF00271 Helicase conserved C-terminal domain M484_3937 PF00849 RNA pseudouridylate synthase M484_3937 PF01479 S4 domain M484_3938 PF07690 Major Facilitator Superfamily M484_3939 PF13989 YejG-like protein M484_394 PF05971 RNA methyltransferase M484_3940 PF00005 ABC transporter M484_3940 PF08352 Oligopeptide/dipeptide transporter, C-terminal region M484_3941 PF12911 N-terminal TM domain of oligopeptide transport permease C M484_3941 PF00528 Binding-protein-dependent transport system inner membrane component M484_3942 PF00528 Binding-protein-dependent transport system inner membrane component M484_3943 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle M484_3944 PF12792 CSS motif domain associated with EAL M484_3944 PF00563 EAL domain M484_3946 PF00877 NlpC/P60 family M484_3947 PF01569 PAP2 superfamily M484_3948 PF07683 Cobalamin synthesis protein cobW C-terminal domain M484_3948 PF02492 CobW/HypB/UreG, nucleotide-binding domain M484_395 PF08447 PAS fold M484_395 PF13426 PAS domain M484_395 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain M484_3950 PF00392 Bacterial regulatory proteins, gntR family M484_3950 PF07729 FCD domain M484_3951 PF01232 Mannitol dehydrogenase Rossmann domain M484_3951 PF08125 Mannitol dehydrogenase C-terminal domain M484_3952 PF03786 D-mannonate dehydratase (UxuA) M484_3953 PF08207 Elongation factor P (EF-P) KOW-like domain M484_3953 PF09285 Elongation factor P, C-terminal M484_3953 PF01132 Elongation factor P (EF-P) OB domain M484_3954 PF03222 Tryptophan/tyrosine permease family M484_3955 PF03692 Putative zinc- or iron-chelating domain M484_3957 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain M484_3957 PF01842 ACT domain M484_3957 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain M484_3959 PF00171 Aldehyde dehydrogenase family M484_396 PF00005 ABC transporter M484_3960 PF00370 FGGY family of carbohydrate kinases, N-terminal domain M484_3960 PF02782 FGGY family of carbohydrate kinases, C-terminal domain M484_3961 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) M484_3963 PF00005 ABC transporter M484_3964 PF02653 Branched-chain amino acid transport system / permease component M484_3965 PF00293 NUDIX domain M484_3966 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 M484_3966 PF00381 PTS HPr component phosphorylation site M484_3967 PF00294 pfkB family carbohydrate kinase M484_3968 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit M484_3968 PF02378 Phosphotransferase system, EIIC M484_3969 PF00486 Transcriptional regulatory protein, C terminal M484_397 PF00528 Binding-protein-dependent transport system inner membrane component M484_3970 PF17550 Family of unknown function M484_3972 PF02753 Pili assembly chaperone PapD, C-terminal domain M484_3972 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain M484_3973 PF13954 PapC N-terminal domain M484_3973 PF00577 Outer membrane usher protein M484_3973 PF13953 PapC C-terminal domain M484_3974 PF01261 Xylose isomerase-like TIM barrel M484_3975 PF03601 Conserved hypothetical protein 698 M484_3976 PF03466 LysR substrate binding domain M484_3976 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M484_3978 PF00324 Amino acid permease M484_398 PF00497 Bacterial extracellular solute-binding proteins, family 3 M484_3980 PF01032 FecCD transport family M484_3981 PF00005 ABC transporter M484_3982 PF00593 TonB dependent receptor M484_3982 PF07715 TonB-dependent Receptor Plug Domain M484_3983 PF13417 Glutathione S-transferase, N-terminal domain M484_3983 PF00043 Glutathione S-transferase, C-terminal domain M484_3987 PF03180 NLPA lipoprotein M484_3988 PF09383 NIL domain M484_3988 PF00005 ABC transporter M484_3989 PF00528 Binding-protein-dependent transport system inner membrane component M484_3990 PF07943 Penicillin-binding protein 5, C-terminal domain M484_3990 PF00768 D-alanyl-D-alanine carboxypeptidase M484_3992 PF08220 DeoR-like helix-turn-helix domain M484_3992 PF00455 DeoR C terminal sensor domain M484_3993 PF01791 DeoC/LacD family aldolase M484_3994 PF01569 PAP2 superfamily M484_3996 PF02080 TrkA-C domain M484_3996 PF06826 Predicted Permease Membrane Region M484_3997 PF00462 Glutaredoxin M484_3998 PF07214 Protein of unknown function (DUF1418) M484_3999 PF10722 Putative bacterial sensory transduction regulator M484_4 PF02901 Pyruvate formate lyase-like M484_4 PF01228 Glycine radical M484_40 PF10672 S-adenosylmethionine-dependent methyltransferase M484_40 PF01170 Putative RNA methylase family UPF0020 M484_40 PF02926 THUMP domain M484_400 PF00210 Ferritin-like domain M484_4000 PF13416 Bacterial extracellular solute-binding protein M484_4001 PF08402 TOBE domain M484_4001 PF00005 ABC transporter M484_4002 PF00528 Binding-protein-dependent transport system inner membrane component M484_4003 PF00528 Binding-protein-dependent transport system inner membrane component M484_4004 PF10767 Protein of unknown function (DUF2593) M484_4005 PF05958 tRNA (Uracil-5-)-methyltransferase M484_4006 PF00497 Bacterial extracellular solute-binding proteins, family 3 M484_401 PF13649 Methyltransferase domain M484_4012 PF01032 FecCD transport family M484_4013 PF00005 ABC transporter M484_4014 PF03059 Nicotianamine synthase protein M484_4015 PF10100 Staphylopine dehydrogenase M484_4016 PF00892 EamA-like transporter family M484_4017 PF00528 Binding-protein-dependent transport system inner membrane component M484_4018 PF00528 Binding-protein-dependent transport system inner membrane component M484_4019 PF00497 Bacterial extracellular solute-binding proteins, family 3 M484_4020 PF00005 ABC transporter M484_4021 PF01817 Chorismate mutase type II M484_4022 PF12883 Protein of unknown function (DUF3828) M484_4023 PF01370 NAD dependent epimerase/dehydratase family M484_4024 PF13460 NAD(P)H-binding M484_4024 PF11066 Protein of unknown function (DUF2867) M484_4025 PF01212 Beta-eliminating lyase M484_4026 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain M484_4026 PF00205 Thiamine pyrophosphate enzyme, central domain M484_4026 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain M484_4027 PF00970 Oxidoreductase FAD-binding domain M484_4027 PF00175 Oxidoreductase NAD-binding domain M484_4027 PF00111 2Fe-2S iron-sulfur cluster binding domain M484_4028 PF03063 Prismane/CO dehydrogenase family M484_4029 PF03956 Lysine exporter LysO M484_403 PF00892 EamA-like transporter family M484_4030 PF11398 Protein of unknown function (DUF2813) M484_4031 PF04393 Protein of unknown function (DUF535) M484_4032 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion M484_4033 PF12704 MacB-like periplasmic core domain M484_4033 PF00005 ABC transporter M484_4033 PF02687 FtsX-like permease family M484_4034 PF02687 FtsX-like permease family M484_4034 PF12704 MacB-like periplasmic core domain M484_4034 PF00005 ABC transporter M484_4035 PF00313 'Cold-shock' DNA-binding domain M484_4036 PF02617 ATP-dependent Clp protease adaptor protein ClpS M484_4037 PF02861 Clp amino terminal domain, pathogenicity island component M484_4037 PF07724 AAA domain (Cdc48 subfamily) M484_4037 PF17871 AAA lid domain M484_4037 PF00004 ATPase family associated with various cellular activities (AAA) M484_4037 PF10431 C-terminal, D2-small domain, of ClpB protein M484_4039 PF01176 Translation initiation factor 1A / IF-1 M484_404 PF13505 Outer membrane protein beta-barrel domain M484_4040 PF03588 Leucyl/phenylalanyl-tRNA protein transferase M484_4041 PF00005 ABC transporter M484_4041 PF00664 ABC transporter transmembrane region M484_4042 PF00664 ABC transporter transmembrane region M484_4042 PF00005 ABC transporter M484_4043 PF07992 Pyridine nucleotide-disulphide oxidoreductase M484_4044 PF01037 Lrp/AsnC ligand binding domain M484_4045 PF01580 FtsK/SpoIIIE family M484_4045 PF13491 4TM region of DNA translocase FtsK/SpoIIIE M484_4045 PF09397 Ftsk gamma domain M484_4045 PF17854 FtsK alpha domain M484_4046 PF03548 Outer membrane lipoprotein carrier protein LolA M484_4048 PF00004 ATPase family associated with various cellular activities (AAA) M484_4048 PF16193 AAA C-terminal domain M484_4048 PF12002 MgsA AAA+ ATPase C terminal M484_4049 PF09673 Type-F conjugative transfer system pilin assembly protein M484_4050 PF06834 TraU protein M484_4051 PF12477 Sex factor F TraW protein N terminal M484_4052 PF09677 Type-F conjugative transfer system protein (TrbI_Ftype) M484_4053 PF11130 F pilus assembly Type-IV secretion system for plasmid transfer M484_4058 PF09676 Type IV conjugative transfer system lipoprotein (TraV) M484_4059 PF03743 Bacterial conjugation TrbI-like protein M484_4060 PF06586 TraK protein M484_4061 PF05309 TraE protein M484_4062 PF07178 TraL protein M484_4063 PF05513 TraA M484_4064 PF00872 Transposase, Mutator family M484_4065 PF10412 Type IV secretion-system coupling protein DNA-binding domain M484_4065 PF12615 F sex factor protein N terminal M484_4066 PF07057 DNA helicase TraI M484_4066 PF08751 TrwC relaxase M484_4066 PF18272 single-stranded DNA binding TraI N-terminal subdomain M484_4066 PF18340 DNA relaxase TraI 2B/2B-like domain M484_4067 PF05857 TraX protein M484_4069 PF13462 Thioredoxin M484_4069 PF06965 Na+/H+ antiporter 1 M484_4071 PF02387 IncFII RepA protein family M484_4073 PF02371 Transposase IS116/IS110/IS902 family M484_4073 PF01548 Transposase M484_4075 PF13091 PLD-like domain M484_4077 PF04754 Putative transposase, YhgA-like M484_4078 PF00239 Resolvase, N terminal domain M484_4078 PF02796 Helix-turn-helix domain of resolvase M484_408 PF00107 Zinc-binding dehydrogenase M484_408 PF08240 Alcohol dehydrogenase GroES-like domain M484_4081 PF13614 AAA domain M484_4081 PF18607 ParA helix turn helix domain M484_4082 PF08775 ParB family M484_4082 PF02195 ParB-like nuclease domain M484_4085 PF01555 DNA methylase M484_4087 PF07128 Protein of unknown function (DUF1380) M484_409 PF13407 Periplasmic binding protein domain M484_4090 PF06006 Bacterial protein of unknown function (DUF905) M484_4091 PF02195 ParB-like nuclease domain M484_4092 PF02796 Helix-turn-helix domain of resolvase M484_4092 PF00665 Integrase core domain M484_4093 PF01695 IstB-like ATP binding protein M484_4094 PF02413 Caudovirales tail fibre assembly protein, lambda gpK M484_4095 PF07484 Phage Tail Collar Domain M484_4095 PF08400 Prophage tail fibre N-terminal M484_4095 PF03335 Phage tail fibre repeat M484_4095 PF03335 Phage tail fibre repeat M484_4095 PF08400 Prophage tail fibre N-terminal M484_4095 PF07484 Phage Tail Collar Domain M484_41 PF00005 ABC transporter M484_41 PF16326 ABC transporter C-terminal domain M484_41 PF12848 ABC transporter M484_410 PF00005 ABC transporter M484_411 PF00005 ABC transporter M484_4119 PF00664 ABC transporter transmembrane region M484_4119 PF00005 ABC transporter M484_4119 PF03412 Peptidase C39 family M484_412 PF02653 Branched-chain amino acid transport system / permease component M484_4120 PF02195 ParB-like nuclease domain M484_4120 PF17762 HTH domain found in ParB protein M484_4121 PF02195 ParB-like nuclease domain M484_4121 PF17762 HTH domain found in ParB protein M484_4122 PF17191 RecG wedge domain M484_4122 PF00271 Helicase conserved C-terminal domain M484_4122 PF00270 DEAD/DEAH box helicase M484_4128 PF01797 Transposase IS200 like M484_413 PF00356 Bacterial regulatory proteins, lacI family M484_4132 PF01797 Transposase IS200 like M484_4134 PF00268 Ribonucleotide reductase, small chain M484_4135 PF02867 Ribonucleotide reductase, barrel domain M484_4135 PF03477 ATP cone domain M484_4135 PF00317 Ribonucleotide reductase, all-alpha domain M484_414 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M484_414 PF03466 LysR substrate binding domain M484_4143 PF01051 Initiator Replication protein M484_415 PF00180 Isocitrate/isopropylmalate dehydrogenase M484_4151 PF00154 recA bacterial DNA recombination protein M484_4153 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain M484_4153 PF01367 5'-3' exonuclease, C-terminal SAM fold M484_4159 PF14579 Helix-hairpin-helix motif M484_4159 PF17657 Bacterial DNA polymerase III alpha subunit finger domain M484_4159 PF02811 PHP domain M484_4159 PF07733 Bacterial DNA polymerase III alpha NTPase domain M484_416 PF02028 BCCT, betaine/carnitine/choline family transporter M484_4161 PF06213 Cobalamin biosynthesis protein CobT M484_4161 PF11775 Cobalamin biosynthesis protein CobT VWA domain M484_4165 PF09255 Caf1 Capsule antigen M484_4166 PF00577 Outer membrane usher protein M484_4166 PF13954 PapC N-terminal domain M484_4166 PF13953 PapC C-terminal domain M484_4167 PF02753 Pili assembly chaperone PapD, C-terminal domain M484_4167 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain M484_4168 PF06445 GyrI-like small molecule binding domain M484_4168 PF12833 Helix-turn-helix domain M484_417 PF00355 Rieske [2Fe-2S] domain M484_417 PF00848 Ring hydroxylating alpha subunit (catalytic domain) M484_4177 PF00872 Transposase, Mutator family M484_4178 PF07916 TraG-like protein, N-terminal region M484_4179 PF06122 Conjugative relaxosome accessory transposon protein M484_418 PF00175 Oxidoreductase NAD-binding domain M484_418 PF00970 Oxidoreductase FAD-binding domain M484_418 PF00111 2Fe-2S iron-sulfur cluster binding domain M484_4180 PF13728 F plasmid transfer operon protein M484_4181 PF09679 Type-F conjugative transfer system pilin chaperone (TraQ) M484_4182 PF13728 F plasmid transfer operon protein M484_4184 PF06986 Type-1V conjugative transfer system mating pair stabilisation M484_4185 PF02874 ATP synthase alpha/beta family, beta-barrel domain M484_4185 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain M484_4185 PF18269 T3SS EscN ATPase C-terminal domain M484_4186 PF07321 Type III secretion protein YscO M484_4187 PF02120 Flagellar hook-length control protein FliK M484_4188 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term M484_4189 PF00813 FliP family M484_419 PF17287 POTRA domain M484_419 PF08479 POTRA domain, ShlB-type M484_419 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB M484_4190 PF01313 Bacterial export proteins, family 3 M484_4191 PF01311 Bacterial export proteins, family 1 M484_4192 PF01312 FlhB HrpN YscU SpaS Family M484_4194 PF12833 Helix-turn-helix domain M484_4194 PF02311 AraC-like ligand binding domain M484_4195 PF05932 Tir chaperone protein (CesT) family M484_4197 PF16697 Inner membrane component of T3SS, cytoplasmic domain M484_4197 PF16693 Inner membrane component of T3SS, periplasmic domain M484_4198 PF08988 Type III secretion system, cytoplasmic E component of needle M484_4199 PF09392 Type III secretion needle MxiH, YscF, SsaG, EprI, PscF, EscF M484_42 PF04403 Paraquat-inducible protein A M484_420 PF13018 Extended Signal Peptide of Type V secretion system M484_420 PF13332 Hemagglutinin repeat M484_420 PF05860 haemagglutination activity domain M484_420 PF04829 Pre-toxin domain with VENN motif M484_4200 PF09477 Bacterial type II secretion system chaperone protein (type_III_yscG) M484_4201 PF09025 YopR, type III needle-polymerisation regulator M484_4202 PF17001 Type III secretion basal body protein I, YscI, HrpB, PscI M484_4203 PF01514 Secretory protein of YscJ/FliF family M484_4204 PF06578 YOP proteins translocation protein K (YscK) M484_4205 PF02108 Flagellar assembly protein FliH M484_4206 PF09013 YopH, N-terminal M484_4207 PF01527 Transposase M484_4209 PF02796 Helix-turn-helix domain of resolvase M484_4209 PF00665 Integrase core domain M484_4210 PF01695 IstB-like ATP binding protein M484_4211 PF13683 Integrase core domain M484_4211 PF13276 HTH-like domain M484_4212 PF00102 Protein-tyrosine phosphatase M484_4212 PF09013 YopH, N-terminal M484_4213 PF13276 HTH-like domain M484_4213 PF13683 Integrase core domain M484_4215 PF00069 Protein kinase domain M484_4215 PF09632 Rac1-binding domain M484_4221 PF02387 IncFII RepA protein family M484_4222 PF10723 Replication regulatory protein RepB M484_4226 PF18272 single-stranded DNA binding TraI N-terminal subdomain M484_4226 PF08751 TrwC relaxase M484_4226 PF07057 DNA helicase TraI M484_4226 PF18340 DNA relaxase TraI 2B/2B-like domain M484_4228 PF03895 YadA-like membrane anchor domain M484_4228 PF05662 Coiled stalk of trimeric autotransporter adhesin M484_4228 PF05658 Head domain of trimeric autotransporter adhesin M484_423 PF13332 Hemagglutinin repeat M484_423 PF05860 haemagglutination activity domain M484_423 PF13018 Extended Signal Peptide of Type V secretion system M484_423 PF04829 Pre-toxin domain with VENN motif M484_4230 PF05658 Head domain of trimeric autotransporter adhesin M484_4230 PF03895 YadA-like membrane anchor domain M484_4230 PF05662 Coiled stalk of trimeric autotransporter adhesin M484_4231 PF13700 Domain of unknown function (DUF4158) M484_4231 PF01526 Tn3 transposase DDE domain M484_4233 PF00239 Resolvase, N terminal domain M484_4233 PF02796 Helix-turn-helix domain of resolvase M484_4236 PF01527 Transposase M484_4237 PF13276 HTH-like domain M484_4237 PF13683 Integrase core domain M484_4239 PF01695 IstB-like ATP binding protein M484_4240 PF00665 Integrase core domain M484_4242 PF13276 HTH-like domain M484_4242 PF13683 Integrase core domain M484_4243 PF05932 Tir chaperone protein (CesT) family M484_4244 PF09020 YopE, N terminal M484_4244 PF03545 Yersinia virulence determinant (YopE) M484_4246 PF03693 Bacterial antitoxin of ParD toxin-antitoxin type II system and RHH M484_4248 PF18090 Centromere-binding protein HTH domain M484_4248 PF02195 ParB-like nuclease domain M484_4249 PF13614 AAA domain M484_4251 PF13276 HTH-like domain M484_4251 PF00665 Integrase core domain M484_4251 PF13333 Integrase core domain M484_4253 PF05818 Enterobacterial TraT complement resistance protein M484_4255 PF03543 Yersinia/Haemophilus virulence surface antigen M484_4256 PF05932 Tir chaperone protein (CesT) family M484_4260 PF12468 Type III secretion system leucine rich repeat protein M484_4262 PF00872 Transposase, Mutator family M484_4263 PF05844 YopD protein M484_4264 PF04888 Secretion system effector C (SseC) like family M484_4265 PF07720 Tetratricopeptide repeat M484_4266 PF04792 V antigen (LcrV) protein M484_4267 PF07216 LcrG protein M484_4268 PF09621 Type III secretion system regulator (LcrR) M484_4269 PF00771 FHIPEP family M484_427 PF04829 Pre-toxin domain with VENN motif M484_427 PF15526 Novel toxin 21 M484_427 PF05860 haemagglutination activity domain M484_427 PF13332 Hemagglutinin repeat M484_427 PF05594 Haemagluttinin repeat M484_4271 PF09474 Type III secretion system YscX (type_III_YscX) M484_4273 PF09059 TyeA M484_4274 PF07201 HrpJ-like domain M484_429 PF00872 Transposase, Mutator family M484_43 PF02470 MlaD protein M484_430 PF17912 MalK OB fold domain M484_430 PF00005 ABC transporter M484_431 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III M484_431 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I M484_431 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II M484_431 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain M484_432 PF00356 Bacterial regulatory proteins, lacI family M484_434 PF00528 Binding-protein-dependent transport system inner membrane component M484_435 PF00528 Binding-protein-dependent transport system inner membrane component M484_436 PF04041 beta-1,4-mannooligosaccharide phosphorylase M484_44 PF03886 ABC-type transport auxiliary lipoprotein component M484_440 PF00924 Mechanosensitive ion channel M484_441 PF01867 CRISPR associated protein Cas1 M484_443 PF09611 CRISPR-associated protein (Cas_Csy1) M484_444 PF09614 CRISPR-associated protein (Cas_Csy2) M484_445 PF09615 CRISPR-associated protein (Cas_Csy3) M484_446 PF09618 CRISPR-associated protein (Cas_Csy4) M484_447 PF00248 Aldo/keto reductase family M484_449 PF00083 Sugar (and other) transporter M484_451 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M484_451 PF03466 LysR substrate binding domain M484_452 PF00765 Autoinducer synthase M484_453 PF00196 Bacterial regulatory proteins, luxR family M484_453 PF03472 Autoinducer binding domain M484_457 PF01594 AI-2E family transporter M484_458 PF00196 Bacterial regulatory proteins, luxR family M484_459 PF01266 FAD dependent oxidoreductase M484_46 PF12838 4Fe-4S dicluster domain M484_460 PF13991 BssS protein family M484_461 PF00872 Transposase, Mutator family M484_462 PF06183 DinI-like family M484_463 PF01979 Amidohydrolase family M484_464 PF03992 Antibiotic biosynthesis monooxygenase M484_465 PF10150 Ribonuclease E/G family M484_465 PF12111 Polyribonucleotide phosphorylase C terminal M484_465 PF00575 S1 RNA binding domain M484_466 PF01479 S4 domain M484_466 PF00849 RNA pseudouridylate synthase M484_467 PF02545 Maf-like protein M484_468 PF02620 Large ribosomal RNA subunit accumulation protein YceD M484_469 PF01783 Ribosomal L32p protein family M484_47 PF01418 Helix-turn-helix domain, rpiR family M484_47 PF01380 SIS domain M484_470 PF02504 Fatty acid synthesis protein M484_471 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal M484_471 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III M484_472 PF00698 Acyl transferase domain M484_474 PF00550 Phosphopantetheine attachment site M484_475 PF02801 Beta-ketoacyl synthase, C-terminal domain M484_475 PF00109 Beta-ketoacyl synthase, N-terminal domain M484_476 PF01797 Transposase IS200 like M484_477 PF01063 Amino-transferase class IV M484_478 PF02618 YceG-like family M484_479 PF02223 Thymidylate kinase M484_48 PF01380 SIS domain M484_480 PF09115 DNA polymerase III, delta subunit, C terminal M484_481 PF01026 TatD related DNase M484_482 PF02378 Phosphotransferase system, EIIC M484_482 PF00367 phosphotransferase system, EIIB M484_483 PF01797 Transposase IS200 like M484_484 PF08501 Shikimate dehydrogenase substrate binding domain M484_485 PF01230 HIT domain M484_486 PF07233 Protein of unknown function (DUF1425) M484_487 PF08139 Prokaryotic membrane lipoprotein lipid attachment site M484_487 PF13036 Peptidoglycan-synthase activator LpoB M484_488 PF01636 Phosphotransferase enzyme family M484_489 PF00933 Glycosyl hydrolase family 3 N terminal domain M484_490 PF05728 Uncharacterised protein family (UPF0227) M484_491 PF07992 Pyridine nucleotide-disulphide oxidoreductase M484_494 PF00872 Transposase, Mutator family M484_495 PF05433 Glycine zipper 2TM domain M484_496 PF00270 DEAD/DEAH box helicase M484_496 PF02559 CarD-like/TRCF domain M484_496 PF00271 Helicase conserved C-terminal domain M484_496 PF03461 TRCF domain M484_496 PF17757 UvrB interaction domain M484_497 PF12704 MacB-like periplasmic core domain M484_497 PF02687 FtsX-like permease family M484_498 PF00005 ABC transporter M484_499 PF02687 FtsX-like permease family M484_499 PF12704 MacB-like periplasmic core domain M484_5 PF01226 Formate/nitrite transporter M484_50 PF14437 MafB19-like deaminase M484_500 PF00480 ROK family M484_501 PF02146 Sir2 family M484_502 PF01546 Peptidase family M20/M25/M40 M484_502 PF07687 Peptidase dimerisation domain M484_503 PF08007 Cupin superfamily protein M484_504 PF08918 PhoQ Sensor M484_504 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M484_505 PF00486 Transcriptional regulatory protein, C terminal M484_505 PF00072 Response regulator receiver domain M484_507 PF00206 Lyase M484_507 PF08328 Adenylosuccinate lyase C-terminal M484_508 PF04356 Protein of unknown function (DUF489) M484_51 PF00497 Bacterial extracellular solute-binding proteins, family 3 M484_51 PF01464 Transglycosylase SLT domain M484_510 PF00293 NUDIX domain M484_511 PF00849 RNA pseudouridylate synthase M484_512 PF00180 Isocitrate/isopropylmalate dehydrogenase M484_513 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family M484_513 PF00356 Bacterial regulatory proteins, lacI family M484_515 PF08447 PAS fold M484_515 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain M484_516 PF05368 NmrA-like family M484_517 PF01638 HxlR-like helix-turn-helix M484_519 PF00328 Histidine phosphatase superfamily (branch 2) M484_52 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain M484_52 PF02769 AIR synthase related protein, C-terminal domain M484_52 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal M484_520 PF14001 YdfZ protein M484_522 PF01037 Lrp/AsnC ligand binding domain M484_522 PF13404 AsnC-type helix-turn-helix domain M484_523 PF10777 Inner membrane protein YlaC M484_525 PF08240 Alcohol dehydrogenase GroES-like domain M484_525 PF00550 Phosphopantetheine attachment site M484_525 PF00109 Beta-ketoacyl synthase, N-terminal domain M484_525 PF00698 Acyl transferase domain M484_525 PF08659 KR domain M484_525 PF00107 Zinc-binding dehydrogenase M484_525 PF16197 Ketoacyl-synthetase C-terminal extension M484_525 PF02801 Beta-ketoacyl synthase, C-terminal domain M484_525 PF14765 Polyketide synthase dehydratase M484_526 PF02929 Beta galactosidase small chain M484_526 PF16353 Domain of unknown function(DUF4981) M484_526 PF02837 Glycosyl hydrolases family 2, sugar binding domain M484_526 PF02836 Glycosyl hydrolases family 2, TIM barrel domain M484_526 PF00703 Glycosyl hydrolases family 2 M484_527 PF00313 'Cold-shock' DNA-binding domain M484_528 PF10781 Dextransucrase DSRB M484_529 PF02203 Tar ligand binding domain homologue M484_529 PF00672 HAMP domain M484_529 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain M484_530 PF02203 Tar ligand binding domain homologue M484_530 PF00672 HAMP domain M484_530 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain M484_531 PF02308 MgtC family M484_532 PF00690 Cation transporter/ATPase, N-terminus M484_532 PF00689 Cation transporting ATPase, C-terminus M484_533 PF05247 Flagellar transcriptional activator (FlhD) M484_534 PF05280 Flagellar transcriptional activator (FlhC) M484_535 PF01618 MotA/TolQ/ExbB proton channel family M484_536 PF00691 OmpA family M484_536 PF13677 Membrane MotB of proton-channel complex MotA/MotB M484_537 PF01627 Hpt domain M484_537 PF01584 CheW-like domain M484_537 PF02895 Signal transducing histidine kinase, homodimeric domain M484_537 PF09078 CheY binding M484_537 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M484_538 PF01584 CheW-like domain M484_539 PF07690 Major Facilitator Superfamily M484_540 PF01042 Endoribonuclease L-PSP M484_542 PF13309 HTH domain M484_542 PF08348 YheO-like PAS domain M484_543 PF12951 Passenger-associated-transport-repeat M484_546 PF02203 Tar ligand binding domain homologue M484_546 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain M484_546 PF00672 HAMP domain M484_547 PF02203 Tar ligand binding domain homologue M484_547 PF00672 HAMP domain M484_547 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain M484_548 PF01739 CheR methyltransferase, SAM binding domain M484_548 PF03705 CheR methyltransferase, all-alpha domain M484_549 PF01339 CheB methylesterase M484_549 PF00072 Response regulator receiver domain M484_550 PF00072 Response regulator receiver domain M484_551 PF04344 Chemotaxis phosphatase, CheZ M484_552 PF01510 N-acetylmuramoyl-L-alanine amidase M484_553 PF13018 Extended Signal Peptide of Type V secretion system M484_553 PF05662 Coiled stalk of trimeric autotransporter adhesin M484_553 PF05658 Head domain of trimeric autotransporter adhesin M484_553 PF03895 YadA-like membrane anchor domain M484_554 PF13018 Extended Signal Peptide of Type V secretion system M484_554 PF03895 YadA-like membrane anchor domain M484_554 PF05662 Coiled stalk of trimeric autotransporter adhesin M484_554 PF05658 Head domain of trimeric autotransporter adhesin M484_557 PF00842 Alanine racemase, C-terminal domain M484_557 PF01168 Alanine racemase, N-terminal domain M484_56 PF01797 Transposase IS200 like M484_563 PF01695 IstB-like ATP binding protein M484_565 PF00665 Integrase core domain M484_565 PF02796 Helix-turn-helix domain of resolvase M484_567 PF07351 Protein of unknown function (DUF1480) M484_57 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M484_57 PF00512 His Kinase A (phospho-acceptor) domain M484_570 PF02753 Pili assembly chaperone PapD, C-terminal domain M484_570 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain M484_574 PF02470 MlaD protein M484_575 PF04403 Paraquat-inducible protein A M484_576 PF13185 GAF domain M484_577 PF04352 ProQ/FINO family M484_577 PF17516 ProQ C-terminal domain M484_578 PF11818 C-terminal domain of tail specific protease (DUF3340) M484_578 PF00595 PDZ domain M484_578 PF03572 Peptidase family S41 M484_578 PF17804 Tail specific protease N-terminal domain M484_58 PF13942 YfhG lipoprotein M484_580 PF01435 Peptidase family M48 M484_581 PF00419 Fimbrial protein M484_582 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain M484_582 PF02753 Pili assembly chaperone PapD, C-terminal domain M484_583 PF13953 PapC C-terminal domain M484_583 PF00577 Outer membrane usher protein M484_583 PF13954 PapC N-terminal domain M484_585 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain M484_585 PF02753 Pili assembly chaperone PapD, C-terminal domain M484_586 PF07690 Major Facilitator Superfamily M484_587 PF14583 Oligogalacturonate lyase M484_588 PF09339 IclR helix-turn-helix domain M484_588 PF01614 Bacterial transcriptional regulator M484_589 PF01510 N-acetylmuramoyl-L-alanine amidase M484_59 PF00158 Sigma-54 interaction domain M484_59 PF00072 Response regulator receiver domain M484_591 PF04307 LexA-binding, inner membrane-associated putative hydrolase M484_592 PF06178 Oligogalacturonate-specific porin protein (KdgM) M484_593 PF01547 Bacterial extracellular solute-binding protein M484_594 PF03459 TOBE domain M484_594 PF17912 MalK OB fold domain M484_594 PF00005 ABC transporter M484_595 PF00528 Binding-protein-dependent transport system inner membrane component M484_596 PF00528 Binding-protein-dependent transport system inner membrane component M484_597 PF06917 Periplasmic pectate lyase M484_599 PF04962 KduI/IolB family M484_6 PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding M484_6 PF18381 YcaO cyclodehydratase C-terminal domain M484_60 PF00795 Carbon-nitrogen hydrolase M484_60 PF02540 NAD synthase M484_600 PF07883 Cupin domain M484_601 PF00872 Transposase, Mutator family M484_602 PF13419 Haloacid dehalogenase-like hydrolase M484_603 PF14002 YniB-like protein M484_605 PF00950 ABC 3 transport family M484_606 PF00950 ABC 3 transport family M484_607 PF00005 ABC transporter M484_608 PF01297 Zinc-uptake complex component A periplasmic M484_609 PF01464 Transglycosylase SLT domain M484_61 PF00543 Nitrogen regulatory protein P-II M484_610 PF01914 MarC family integral membrane protein M484_612 PF13619 KTSC domain M484_613 PF03129 Anticodon binding domain M484_613 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) M484_613 PF02824 TGS domain M484_613 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain M484_614 PF05198 Translation initiation factor IF-3, N-terminal domain M484_614 PF00707 Translation initiation factor IF-3, C-terminal domain M484_615 PF01632 Ribosomal protein L35 M484_616 PF00453 Ribosomal protein L20 M484_617 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain M484_617 PF01409 tRNA synthetases class II core domain (F) M484_618 PF03483 B3/4 domain M484_618 PF01588 Putative tRNA binding domain M484_618 PF03147 Ferredoxin-fold anticodon binding domain M484_618 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain M484_618 PF03484 tRNA synthetase B5 domain M484_619 PF00216 Bacterial DNA-binding protein M484_62 PF14503 YhfZ C-terminal domain M484_62 PF14502 Helix-turn-helix domain M484_621 PF01032 FecCD transport family M484_622 PF00255 Glutathione peroxidase M484_623 PF00005 ABC transporter M484_624 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family M484_625 PF00535 Glycosyl transferase family 2 M484_626 PF01370 NAD dependent epimerase/dehydratase family M484_626 PF00551 Formyl transferase M484_626 PF02911 Formyl transferase, C-terminal domain M484_627 PF01522 Polysaccharide deacetylase M484_628 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase M484_629 PF00892 EamA-like transporter family M484_63 PF01695 IstB-like ATP binding protein M484_631 PF00877 NlpC/P60 family M484_632 PF10437 Bacterial lipoate protein ligase C-terminus M484_632 PF03099 Biotin/lipoate A/B protein ligase family M484_633 PF02696 Uncharacterized ACR, YdiU/UPF0061 family M484_634 PF00793 DAHP synthetase I family M484_635 PF03618 Kinase/pyrophosphorylase M484_636 PF00391 PEP-utilising enzyme, mobile domain M484_636 PF02896 PEP-utilising enzyme, TIM barrel domain M484_636 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain M484_637 PF01594 AI-2E family transporter M484_638 PF02913 FAD linked oxidases, C-terminal domain M484_638 PF01565 FAD binding domain M484_638 PF13183 4Fe-4S dicluster domain M484_639 PF03061 Thioesterase superfamily M484_64 PF02796 Helix-turn-helix domain of resolvase M484_64 PF00665 Integrase core domain M484_640 PF01521 Iron-sulphur cluster biosynthesis M484_641 PF01458 Uncharacterized protein family (UPF0051) M484_642 PF00005 ABC transporter M484_643 PF01458 Uncharacterized protein family (UPF0051) M484_644 PF00266 Aminotransferase class-V M484_645 PF02657 Fe-S metabolism associated domain M484_646 PF01476 LysM domain M484_646 PF17969 L,D-transpeptidase C-terminal domain M484_646 PF03734 L,D-transpeptidase catalytic domain M484_647 PF01695 IstB-like ATP binding protein M484_648 PF00665 Integrase core domain M484_648 PF02796 Helix-turn-helix domain of resolvase M484_649 PF04728 Lipoprotein leucine-zipper M484_65 PF00970 Oxidoreductase FAD-binding domain M484_65 PF00042 Globin M484_65 PF00175 Oxidoreductase NAD-binding domain M484_650 PF02887 Pyruvate kinase, alpha/beta domain M484_650 PF00224 Pyruvate kinase, barrel domain M484_653 PF01554 MatE M484_654 PF00677 Lumazine binding domain M484_656 PF07690 Major Facilitator Superfamily M484_657 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M484_657 PF03466 LysR substrate binding domain M484_658 PF00356 Bacterial regulatory proteins, lacI family M484_66 PF00464 Serine hydroxymethyltransferase M484_660 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain M484_660 PF02777 Iron/manganese superoxide dismutases, C-terminal domain M484_661 PF00877 NlpC/P60 family M484_663 PF00462 Glutaredoxin M484_664 PF00929 Exonuclease M484_665 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily M484_666 PF18807 Tripartite Tc toxins repeat M484_666 PF14431 YwqJ-like deaminase M484_667 PF00724 NADH:flavin oxidoreductase / NADH oxidase family M484_668 PF00440 Bacterial regulatory proteins, tetR family M484_668 PF16925 Tetracyclin repressor-like, C-terminal domain M484_669 PF00884 Sulfatase M484_669 PF08019 Phosphoethanolamine transferase EptA/EptB M484_67 PF13505 Outer membrane protein beta-barrel domain M484_670 PF06945 Protein of unknown function (DUF1289) M484_671 PF00248 Aldo/keto reductase family M484_672 PF05433 Glycine zipper 2TM domain M484_673 PF03702 Anhydro-N-acetylmuramic acid kinase M484_674 PF09864 Membrane-bound lysozyme-inhibitor of c-type lysozyme M484_675 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region M484_675 PF01243 Pyridoxamine 5'-phosphate oxidase M484_676 PF01479 S4 domain M484_676 PF00579 tRNA synthetases class I (W and Y) M484_677 PF08543 Phosphomethylpyrimidine kinase M484_678 PF02798 Glutathione S-transferase, N-terminal domain M484_678 PF00043 Glutathione S-transferase, C-terminal domain M484_679 PF11656 YjbD family (DUF3811) M484_68 PF00874 PRD domain M484_680 PF04893 Yip1 domain M484_681 PF00854 POT family M484_684 PF00005 ABC transporter M484_685 PF08352 Oligopeptide/dipeptide transporter, C-terminal region M484_685 PF00005 ABC transporter M484_686 PF12911 N-terminal TM domain of oligopeptide transport permease C M484_686 PF00528 Binding-protein-dependent transport system inner membrane component M484_687 PF00528 Binding-protein-dependent transport system inner membrane component M484_688 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle M484_689 PF01797 Transposase IS200 like M484_69 PF12832 MFS_1 like family M484_690 PF00158 Sigma-54 interaction domain M484_690 PF02954 Bacterial regulatory protein, Fis family M484_691 PF04012 PspA/IM30 family M484_692 PF06667 Phage shock protein B M484_693 PF04024 PspC domain M484_695 PF04317 YcjX-like family, DUF463 M484_696 PF05128 Domain of unknown function (DUF697) M484_699 PF00158 Sigma-54 interaction domain M484_699 PF18024 Helix-turn-helix domain M484_7 PF17763 Glutaminase/Asparaginase C-terminal domain M484_7 PF00710 Asparaginase, N-terminal M484_70 PF06226 Protein of unknown function (DUF1007) M484_700 PF01797 Transposase IS200 like M484_701 PF01695 IstB-like ATP binding protein M484_702 PF00665 Integrase core domain M484_702 PF02796 Helix-turn-helix domain of resolvase M484_703 PF08534 Redoxin M484_704 PF13378 Enolase C-terminal domain-like M484_704 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain M484_705 PF00246 Zinc carboxypeptidase M484_706 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle M484_707 PF01544 CorA-like Mg2+ transporter protein M484_709 PF07859 alpha/beta hydrolase fold M484_709 PF13472 GDSL-like Lipase/Acylhydrolase family M484_71 PF03824 High-affinity nickel-transport protein M484_711 PF01171 PP-loop family M484_712 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase M484_712 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg M484_712 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II M484_712 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain M484_712 PF10371 Domain of unknown function M484_713 PF00893 Small Multidrug Resistance protein M484_714 PF02308 MgtC family M484_715 PF03891 Domain of unknown function (DUF333) M484_716 PF03724 META domain M484_717 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain M484_717 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain M484_718 PF11739 Dicarboxylate transport M484_719 PF13617 YnbE-like lipoprotein M484_72 PF00459 Inositol monophosphatase family M484_720 PF07027 Protein of unknown function (DUF1318) M484_721 PF01232 Mannitol dehydrogenase Rossmann domain M484_721 PF08125 Mannitol dehydrogenase C-terminal domain M484_722 PF00325 Bacterial regulatory proteins, crp family M484_722 PF04198 Putative sugar-binding domain M484_723 PF02525 Flavodoxin-like fold M484_724 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold M484_724 PF00271 Helicase conserved C-terminal domain M484_724 PF00270 DEAD/DEAH box helicase M484_724 PF11898 Domain of unknown function (DUF3418) M484_724 PF04408 Helicase associated domain (HA2) M484_727 PF00089 Trypsin M484_729 PF01292 Prokaryotic cytochrome b561 M484_73 PF00588 SpoU rRNA Methylase family M484_730 PF04264 YceI-like domain M484_732 PF18807 Tripartite Tc toxins repeat M484_732 PF14431 YwqJ-like deaminase M484_733 PF02074 Carboxypeptidase Taq (M32) metallopeptidase M484_734 PF00512 His Kinase A (phospho-acceptor) domain M484_734 PF00672 HAMP domain M484_734 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M484_735 PF00486 Transcriptional regulatory protein, C terminal M484_735 PF00072 Response regulator receiver domain M484_737 PF13520 Amino acid permease M484_738 PF07338 Protein of unknown function (DUF1471) M484_739 PF05222 Alanine dehydrogenase/PNT, N-terminal domain M484_739 PF01262 Alanine dehydrogenase/PNT, C-terminal domain M484_739 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch M484_74 PF02082 Transcriptional regulator M484_740 PF02233 NAD(P) transhydrogenase beta subunit M484_741 PF00582 Universal stress protein family M484_742 PF13545 Crp-like helix-turn-helix domain M484_742 PF00027 Cyclic nucleotide-binding domain M484_743 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain M484_743 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain M484_744 PF00245 Alkaline phosphatase M484_746 PF13419 Haloacid dehalogenase-like hydrolase M484_747 PF01842 ACT domain M484_748 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain M484_748 PF00205 Thiamine pyrophosphate enzyme, central domain M484_748 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain M484_75 PF00266 Aminotransferase class-V M484_754 PF10423 Bacterial AMP nucleoside phosphorylase N-terminus M484_754 PF01048 Phosphorylase superfamily M484_755 PF00005 ABC transporter M484_756 PF00528 Binding-protein-dependent transport system inner membrane component M484_757 PF09084 NMT1/THI5 like M484_758 PF13407 Periplasmic binding protein domain M484_76 PF01592 NifU-like N terminal domain M484_760 PF00356 Bacterial regulatory proteins, lacI family M484_761 PF06649 Protein of unknown function (DUF1161) M484_762 PF00654 Voltage gated chloride channel M484_765 PF00480 ROK family M484_766 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M484_766 PF03466 LysR substrate binding domain M484_767 PF07690 Major Facilitator Superfamily M484_768 PF05472 DNA replication terminus site-binding protein (Ter protein) M484_769 PF00206 Lyase M484_769 PF10415 Fumarase C C-terminus M484_77 PF01521 Iron-sulphur cluster biosynthesis M484_770 PF01238 Phosphomannose isomerase type I M484_771 PF06097 Bacterial protein of unknown function (DUF945) M484_773 PF13593 SBF-like CPA transporter family (DUF4137) M484_774 PF02894 Oxidoreductase family, C-terminal alpha/beta domain M484_774 PF01408 Oxidoreductase family, NAD-binding Rossmann fold M484_775 PF02311 AraC-like ligand binding domain M484_775 PF12833 Helix-turn-helix domain M484_776 PF02653 Branched-chain amino acid transport system / permease component M484_777 PF02653 Branched-chain amino acid transport system / permease component M484_778 PF00005 ABC transporter M484_779 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family M484_78 PF00226 DnaJ domain M484_78 PF07743 HSCB C-terminal oligomerisation domain M484_780 PF02782 FGGY family of carbohydrate kinases, C-terminal domain M484_781 PF02610 L-arabinose isomerase M484_781 PF11762 L-arabinose isomerase C-terminal domain M484_783 PF00664 ABC transporter transmembrane region M484_783 PF00005 ABC transporter M484_783 PF03412 Peptidase C39 family M484_785 PF13533 Biotin-lipoyl like M484_786 PF00664 ABC transporter transmembrane region M484_786 PF03412 Peptidase C39 family M484_786 PF00005 ABC transporter M484_787 PF10754 Protein of unknown function (DUF2569) M484_788 PF02508 Rnf-Nqr subunit, membrane protein M484_789 PF04060 Putative Fe-S cluster M484_79 PF00012 Hsp70 protein M484_790 PF13237 4Fe-4S dicluster domain M484_790 PF10531 SLBB domain M484_790 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit M484_790 PF13375 RnfC Barrel sandwich hybrid domain M484_791 PF06445 GyrI-like small molecule binding domain M484_791 PF12833 Helix-turn-helix domain M484_792 PF03116 NQR2, RnfD, RnfE family M484_793 PF04205 FMN-binding domain M484_794 PF02508 Rnf-Nqr subunit, membrane protein M484_795 PF00730 HhH-GPD superfamily base excision DNA repair protein M484_795 PF10576 Iron-sulfur binding domain of endonuclease III M484_795 PF00633 Helix-hairpin-helix motif M484_796 PF01370 NAD dependent epimerase/dehydratase family M484_797 PF07690 Major Facilitator Superfamily M484_798 PF17876 Cold shock domain M484_798 PF08206 Ribonuclease B OB domain M484_798 PF00773 RNB domain M484_798 PF00575 S1 RNA binding domain M484_799 PF13722 5TM C-terminal transporter carbon starvation CstA M484_799 PF02554 Carbon starvation protein CstA M484_8 PF05658 Head domain of trimeric autotransporter adhesin M484_8 PF03895 YadA-like membrane anchor domain M484_8 PF05662 Coiled stalk of trimeric autotransporter adhesin M484_8 PF05658 Head domain of trimeric autotransporter adhesin M484_8 PF13018 Extended Signal Peptide of Type V secretion system M484_8 PF13018 Extended Signal Peptide of Type V secretion system M484_8 PF03895 YadA-like membrane anchor domain M484_8 PF05662 Coiled stalk of trimeric autotransporter adhesin M484_80 PF00111 2Fe-2S iron-sulfur cluster binding domain M484_800 PF04328 Selenoprotein, putative M484_801 PF00923 Transaldolase/Fructose-6-phosphate aldolase M484_803 PF00596 Class II Aldolase and Adducin N-terminal domain M484_805 PF01253 Translation initiation factor SUI1 M484_806 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family M484_808 PF18073 Rubredoxin metal binding domain M484_809 PF06305 Lipopolysaccharide assembly protein A domain M484_81 PF04384 Iron-sulphur cluster assembly M484_810 PF01569 PAP2 superfamily M484_811 PF00925 GTP cyclohydrolase II M484_812 PF00694 Aconitase C-terminal domain M484_812 PF00330 Aconitase family (aconitate hydratase) M484_814 PF03466 LysR substrate binding domain M484_814 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M484_815 PF01797 Transposase IS200 like M484_816 PF08272 Topoisomerase I zinc-ribbon-like M484_816 PF01751 Toprim domain M484_816 PF01131 DNA topoisomerase M484_816 PF01396 Topoisomerase DNA binding C4 zinc finger M484_818 PF10692 Protein of unknown function (DUF2498) M484_819 PF08496 Peptidase family S49 N-terminal M484_819 PF01343 Peptidase family S49 M484_82 PF12404 Peptidase M484_82 PF00883 Cytosol aminopeptidase family, catalytic domain M484_820 PF00106 short chain dehydrogenase M484_821 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP M484_822 PF01479 S4 domain M484_822 PF00849 RNA pseudouridylate synthase M484_823 PF01300 Telomere recombination M484_824 PF02811 PHP domain M484_825 PF00425 chorismate binding enzyme M484_825 PF04715 Anthranilate synthase component I, N terminal region M484_826 PF00117 Glutamine amidotransferase class-I M484_827 PF00591 Glycosyl transferase family, a/b domain M484_827 PF02885 Glycosyl transferase family, helical bundle domain M484_828 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase M484_828 PF00218 Indole-3-glycerol phosphate synthase M484_829 PF00291 Pyridoxal-phosphate dependent enzyme M484_83 PF14581 SseB protein C-terminal domain M484_83 PF07179 SseB protein N-terminal domain M484_830 PF00290 Tryptophan synthase alpha chain M484_832 PF03922 OmpW family M484_836 PF04279 Intracellular septation protein A M484_837 PF03061 Thioesterase superfamily M484_838 PF00872 Transposase, Mutator family M484_839 PF00872 Transposase, Mutator family M484_840 PF03544 Gram-negative bacterial TonB protein C-terminal M484_841 PF03795 YCII-related domain M484_844 PF13505 Outer membrane protein beta-barrel domain M484_845 PF13396 Phospholipase_D-nuclease N-terminal M484_845 PF13091 PLD-like domain M484_846 PF04269 Protein of unknown function, DUF440 M484_848 PF08352 Oligopeptide/dipeptide transporter, C-terminal region M484_848 PF00005 ABC transporter M484_849 PF00005 ABC transporter M484_849 PF08352 Oligopeptide/dipeptide transporter, C-terminal region M484_85 PF03212 Pertactin M484_85 PF03797 Autotransporter beta-domain M484_85 PF16168 Adhesin of bacterial autotransporter system, probable stalk M484_850 PF12911 N-terminal TM domain of oligopeptide transport permease C M484_850 PF00528 Binding-protein-dependent transport system inner membrane component M484_851 PF00528 Binding-protein-dependent transport system inner membrane component M484_852 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle M484_853 PF01914 MarC family integral membrane protein M484_854 PF00171 Aldehyde dehydrogenase family M484_854 PF00465 Iron-containing alcohol dehydrogenase M484_855 PF00265 Thymidine kinase M484_856 PF00816 H-NS histone family M484_857 PF00872 Transposase, Mutator family M484_858 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain M484_858 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain M484_858 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain M484_859 PF00072 Response regulator receiver domain M484_86 PF03797 Autotransporter beta-domain M484_86 PF16168 Adhesin of bacterial autotransporter system, probable stalk M484_86 PF03212 Pertactin M484_860 PF02810 SEC-C motif M484_861 PF01842 ACT domain M484_861 PF00551 Formyl transferase M484_865 PF00872 Transposase, Mutator family M484_866 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M484_866 PF03466 LysR substrate binding domain M484_867 PF03372 Endonuclease/Exonuclease/phosphatase family M484_868 PF00293 NUDIX domain M484_869 PF07383 Protein of unknown function (DUF1496) M484_870 PF01131 DNA topoisomerase M484_870 PF01751 Toprim domain M484_871 PF00586 AIR synthase related protein, N-terminal domain M484_871 PF02769 AIR synthase related protein, C-terminal domain M484_872 PF00881 Nitroreductase family M484_873 PF01343 Peptidase family S49 M484_874 PF17763 Glutaminase/Asparaginase C-terminal domain M484_874 PF00710 Asparaginase, N-terminal M484_875 PF00857 Isochorismatase family M484_876 PF07023 Protein of unknown function (DUF1315) M484_877 PF01641 SelR domain M484_878 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain M484_878 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain M484_879 PF01263 Aldose 1-epimerase M484_88 PF00334 Nucleoside diphosphate kinase M484_880 PF06629 MltA-interacting protein MipA M484_881 PF06798 PrkA serine protein kinase C-terminal domain M484_881 PF08298 PrkA AAA domain M484_882 PF04285 Protein of unknown function (DUF444) M484_884 PF03466 LysR substrate binding domain M484_884 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M484_885 PF05726 Pirin C-terminal cupin domain M484_885 PF02678 Pirin M484_886 PF07690 Major Facilitator Superfamily M484_887 PF01266 FAD dependent oxidoreductase M484_888 PF04293 SpoVR like protein M484_889 PF00392 Bacterial regulatory proteins, gntR family M484_889 PF07840 FadR C-terminal domain M484_89 PF04055 Radical SAM superfamily M484_890 PF06450 Bacterial Na+/H+ antiporter B (NhaB) M484_891 PF02600 Disulfide bond formation protein DsbB M484_894 PF00266 Aminotransferase class-V M484_896 PF02413 Caudovirales tail fibre assembly protein, lambda gpK M484_91 PF13464 Domain of unknown function (DUF4115) M484_912 PF01797 Transposase IS200 like M484_92 PF04551 GcpE protein M484_93 PF03129 Anticodon binding domain M484_93 PF13393 Histidyl-tRNA synthetase M484_938 PF06530 Phage antitermination protein Q M484_94 PF09976 Tetratricopeptide repeat-like domain M484_940 PF05772 NinB protein M484_943 PF01695 IstB-like ATP binding protein M484_944 PF01695 IstB-like ATP binding protein M484_946 PF02796 Helix-turn-helix domain of resolvase M484_946 PF00665 Integrase core domain M484_947 PF12167 Arm DNA-binding domain M484_947 PF00589 Phage integrase family M484_948 PF03692 Putative zinc- or iron-chelating domain M484_949 PF01557 Fumarylacetoacetate (FAA) hydrolase family M484_95 PF13360 PQQ-like domain M484_950 PF13406 Transglycosylase SLT domain M484_951 PF05166 YcgL domain M484_952 PF03775 Septum formation inhibitor MinC, C-terminal domain M484_952 PF05209 Septum formation inhibitor MinC, N-terminal domain M484_953 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain M484_954 PF03776 Septum formation topological specificity factor MinE M484_955 PF01612 3'-5' exonuclease M484_955 PF00570 HRDC domain M484_956 PF00501 AMP-binding enzyme M484_956 PF13193 AMP-binding enzyme C-terminal domain M484_957 PF03843 Outer membrane lipoprotein Slp family M484_958 PF00814 Glycoprotease family M484_959 PF04851 Type III restriction enzyme, res subunit M484_959 PF13307 Helicase C-terminal domain M484_96 PF01926 50S ribosome-binding GTPase M484_96 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal M484_960 PF01042 Endoribonuclease L-PSP M484_961 PF00893 Small Multidrug Resistance protein M484_962 PF00893 Small Multidrug Resistance protein M484_963 PF01081 KDPG and KHG aldolase M484_965 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain M484_965 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain M484_966 PF01380 SIS domain M484_966 PF01418 Helix-turn-helix domain, rpiR family M484_967 PF02887 Pyruvate kinase, alpha/beta domain M484_967 PF00224 Pyruvate kinase, barrel domain M484_968 PF03279 Bacterial lipid A biosynthesis acyltransferase M484_969 PF01476 LysM domain M484_969 PF01551 Peptidase family M23 M484_969 PF08525 Opacity-associated protein A N-terminal motif M484_970 PF01297 Zinc-uptake complex component A periplasmic M484_971 PF00005 ABC transporter M484_972 PF00950 ABC 3 transport family M484_973 PF05491 RuvB C-terminal winged helix domain M484_973 PF05496 Holliday junction DNA helicase RuvB P-loop domain M484_973 PF17864 RuvB AAA lid domain M484_974 PF01330 RuvA N terminal domain M484_974 PF07499 RuvA, C-terminal domain M484_975 PF02075 Crossover junction endodeoxyribonuclease RuvC M484_976 PF01709 Transcriptional regulator M484_977 PF00293 NUDIX domain M484_978 PF01336 OB-fold nucleic acid binding domain M484_978 PF02938 GAD domain M484_978 PF00152 tRNA synthetases class II (D, K and N) M484_979 PF01904 Protein of unknown function DUF72 M484_98 PF07191 zinc-ribbons M484_980 PF01124 MAPEG family M484_981 PF13649 Methyltransferase domain M484_982 PF08003 Protein of unknown function (DUF1698) M484_983 PF03932 CutC family M484_984 PF06185 YecM protein M484_985 PF00750 tRNA synthetases class I (R) M484_985 PF03485 Arginyl tRNA synthetase N terminal domain M484_985 PF05746 DALR anticodon binding domain M484_986 PF05860 haemagglutination activity domain M484_986 PF13332 Hemagglutinin repeat M484_987 PF08479 POTRA domain, ShlB-type M484_987 PF17287 POTRA domain M484_987 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB M484_988 PF03023 Lipid II flippase MurJ M484_989 PF01408 Oxidoreductase family, NAD-binding Rossmann fold M484_99 PF02601 Exonuclease VII, large subunit M484_99 PF13742 OB-fold nucleic acid binding domain M484_990 PF13302 Acetyltransferase (GNAT) domain M484_991 PF07690 Major Facilitator Superfamily M484_992 PF07273 Protein of unknown function (DUF1439) M484_993 PF02613 Nitrate reductase delta subunit M484_994 PF02811 PHP domain M484_996 PF00480 ROK family M484_996 PF01325 Iron dependent repressor, N-terminal DNA binding domain M484_997 PF03009 Glycerophosphoryl diester phosphodiesterase family M484_998 PF00005 ABC transporter M484_998 PF08402 TOBE domain M484_999 PF01797 Transposase IS200 like