locus-tag class description LDH63_00005 PF00308 Bacterial dnaA protein LDH63_00005 PF08299 Bacterial dnaA protein helix-turn-helix LDH63_00005 PF11638 DnaA N-terminal domain LDH63_00010 PF00712 DNA polymerase III beta subunit, N-terminal domain LDH63_00010 PF02767 DNA polymerase III beta subunit, central domain LDH63_00010 PF02768 DNA polymerase III beta subunit, C-terminal domain LDH63_00020 PF02463 RecF/RecN/SMC N terminal domain LDH63_00025 PF01751 Toprim domain LDH63_00025 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LDH63_00025 PF18053 DNA gyrase B subunit insert domain LDH63_00025 PF00986 DNA gyrase B subunit, carboxyl terminus LDH63_00025 PF00204 DNA gyrase B LDH63_00040 PF02423 Ornithine cyclodeaminase/mu-crystallin family LDH63_00045 PF13291 ACT domain LDH63_00045 PF00291 Pyridoxal-phosphate dependent enzyme LDH63_00055 PF07119 Protein of unknown function (DUF1375) LDH63_00060 PF00011 Hsp20/alpha crystallin family LDH63_00065 PF00011 Hsp20/alpha crystallin family LDH63_00070 PF06826 Predicted Permease Membrane Region LDH63_00070 PF02080 TrkA-C domain LDH63_00075 PF00155 Aminotransferase class I and II LDH63_00085 PF00128 Alpha amylase, catalytic domain LDH63_00090 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain LDH63_00090 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain LDH63_00100 PF13488 Glycine zipper LDH63_00100 PF00691 OmpA family LDH63_00110 PF03352 Methyladenine glycosylase LDH63_00115 PF02091 Glycyl-tRNA synthetase alpha subunit LDH63_00120 PF05746 DALR anticodon binding domain LDH63_00120 PF02092 Glycyl-tRNA synthetase beta subunit LDH63_00125 PF11254 Protein of unknown function (DUF3053) LDH63_00130 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 LDH63_00130 PF02378 Phosphotransferase system, EIIC LDH63_00130 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit LDH63_00135 PF01232 Mannitol dehydrogenase Rossmann domain LDH63_00135 PF08125 Mannitol dehydrogenase C-terminal domain LDH63_00140 PF05068 Mannitol repressor LDH63_00145 PF10928 Protein of unknown function (DUF2810) LDH63_00160 PF00672 HAMP domain LDH63_00160 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LDH63_00160 PF02203 Tar ligand binding domain homologue LDH63_00165 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain LDH63_00165 PF02777 Iron/manganese superoxide dismutases, C-terminal domain LDH63_00170 PF02634 FdhD/NarQ family LDH63_00180 PF13247 4Fe-4S dicluster domain LDH63_00180 PF09163 Formate dehydrogenase N, transmembrane LDH63_00185 PF01292 Prokaryotic cytochrome b561 LDH63_00190 PF04216 Protein involved in formate dehydrogenase formation LDH63_00195 PF12390 Selenocysteine synthase N terminal LDH63_00195 PF03841 L-seryl-tRNA selenium transferase LDH63_00200 PF03144 Elongation factor Tu domain 2 LDH63_00200 PF09107 Elongation factor SelB, winged helix LDH63_00200 PF00009 Elongation factor Tu GTP binding domain LDH63_00200 PF09106 Elongation factor SelB, winged helix LDH63_00230 PF07690 Major Facilitator Superfamily LDH63_00245 PF01757 Acyltransferase family LDH63_00250 PF00419 Fimbrial protein LDH63_00260 PF13954 PapC N-terminal domain LDH63_00260 PF13953 PapC C-terminal domain LDH63_00260 PF00577 Outer membrane usher protein LDH63_00265 PF02753 Pili assembly chaperone PapD, C-terminal domain LDH63_00265 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain LDH63_00275 PF00370 FGGY family of carbohydrate kinases, N-terminal domain LDH63_00275 PF02782 FGGY family of carbohydrate kinases, C-terminal domain LDH63_00285 PF13407 Periplasmic binding protein domain LDH63_00290 PF00005 ABC transporter LDH63_00295 PF02653 Branched-chain amino acid transport system / permease component LDH63_00300 PF12833 Helix-turn-helix domain LDH63_00310 PF13356 Arm DNA-binding domain LDH63_00310 PF14659 Phage integrase, N-terminal SAM-like domain LDH63_00310 PF00589 Phage integrase family LDH63_00320 PF04606 Ogr/Delta-like zinc finger LDH63_00355 PF00005 ABC transporter LDH63_00360 PF01032 FecCD transport family LDH63_00365 PF01032 FecCD transport family LDH63_00370 PF01497 Periplasmic binding protein LDH63_00385 PF00156 Phosphoribosyl transferase domain LDH63_00390 PF00291 Pyridoxal-phosphate dependent enzyme LDH63_00395 PF01175 Urocanase Rossmann-like domain LDH63_00395 PF17392 Urocanase C-terminal domain LDH63_00395 PF17391 Urocanase N-terminal domain LDH63_00400 PF00221 Aromatic amino acid lyase LDH63_00405 PF00324 Amino acid permease LDH63_00410 PF12146 Serine aminopeptidase, S33 LDH63_00415 PF08019 Phosphoethanolamine transferase EptA/EptB LDH63_00415 PF00884 Sulfatase LDH63_00420 PF00196 Bacterial regulatory proteins, luxR family LDH63_00420 PF00072 Response regulator receiver domain LDH63_00430 PF02796 Helix-turn-helix domain of resolvase LDH63_00430 PF00665 Integrase core domain LDH63_00435 PF01695 IstB-like ATP binding protein LDH63_00440 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LDH63_00440 PF05231 MASE1 LDH63_00440 PF07730 Histidine kinase LDH63_00445 PF07690 Major Facilitator Superfamily LDH63_00455 PF05860 haemagglutination activity domain LDH63_00455 PF04829 Pre-toxin domain with VENN motif LDH63_00455 PF05594 Haemagluttinin repeat LDH63_00455 PF13332 Hemagglutinin repeat LDH63_00460 PF08479 POTRA domain, ShlB-type LDH63_00460 PF17287 POTRA domain LDH63_00460 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB LDH63_00465 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle LDH63_00475 PF00528 Binding-protein-dependent transport system inner membrane component LDH63_00475 PF12911 N-terminal TM domain of oligopeptide transport permease C LDH63_00480 PF00005 ABC transporter LDH63_00480 PF08352 Oligopeptide/dipeptide transporter, C-terminal region LDH63_00485 PF00005 ABC transporter LDH63_00485 PF08352 Oligopeptide/dipeptide transporter, C-terminal region LDH63_00495 PF00990 Diguanylate cyclase, GGDEF domain LDH63_00495 PF00672 HAMP domain LDH63_00495 PF00563 EAL domain LDH63_00495 PF17154 Gammaproteobacterial periplasmic sensor domain LDH63_00500 PF06178 Oligogalacturonate-specific porin protein (KdgM) LDH63_00505 PF06917 Periplasmic pectate lyase LDH63_00515 PF00375 Sodium:dicarboxylate symporter family LDH63_00520 PF00675 Insulinase (Peptidase family M16) LDH63_00520 PF05193 Peptidase M16 inactive domain LDH63_00525 PF00294 pfkB family carbohydrate kinase LDH63_00530 PF01361 Tautomerase enzyme LDH63_00535 PF00563 EAL domain LDH63_00540 PF05170 AsmA family LDH63_00545 PF02611 CDP-diacylglycerol pyrophosphatase LDH63_00550 PF03631 Virulence factor BrkB LDH63_00575 PF02595 Glycerate kinase family LDH63_00580 PF02447 GntP family permease LDH63_00590 PF05651 Putative sugar diacid recognition LDH63_00590 PF17853 GGDEF-like domain LDH63_00590 PF13556 PucR C-terminal helix-turn-helix domain LDH63_00595 PF07992 Pyridine nucleotide-disulphide oxidoreductase LDH63_00595 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain LDH63_00600 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ LDH63_00605 PF01432 Peptidase family M3 LDH63_00610 PF04445 Putative SAM-dependent methyltransferase LDH63_00615 PF08548 Peptidase M10 serralysin C terminal LDH63_00615 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) LDH63_00615 PF00413 Matrixin LDH63_00620 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain LDH63_00620 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase LDH63_00625 PF00582 Universal stress protein family LDH63_00630 PF10625 Universal stress protein B (UspB) LDH63_00640 PF01384 Phosphate transporter family LDH63_00650 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LDH63_00650 PF00512 His Kinase A (phospho-acceptor) domain LDH63_00650 PF08448 PAS fold LDH63_00650 PF13188 PAS domain LDH63_00650 PF00072 Response regulator receiver domain LDH63_00655 PF00005 ABC transporter LDH63_00660 PF02653 Branched-chain amino acid transport system / permease component LDH63_00665 PF13407 Periplasmic binding protein domain LDH63_00675 PF01116 Fructose-bisphosphate aldolase class-II LDH63_00685 PF00072 Response regulator receiver domain LDH63_00685 PF00486 Transcriptional regulatory protein, C terminal LDH63_00695 PF02678 Pirin LDH63_00695 PF17954 Quercetinase C-terminal cupin domain LDH63_00700 PF00356 Bacterial regulatory proteins, lacI family LDH63_00700 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family LDH63_00705 PF02447 GntP family permease LDH63_00710 PF01202 Shikimate kinase LDH63_00730 PF01914 MarC family integral membrane protein LDH63_00735 PF01118 Semialdehyde dehydrogenase, NAD binding domain LDH63_00735 PF02774 Semialdehyde dehydrogenase, dimerisation domain LDH63_00765 PF02369 Bacterial Ig-like domain (group 1) LDH63_00765 PF11924 Inverse autotransporter, beta-domain LDH63_00765 PF07979 Intimin C-type lectin domain LDH63_00765 PF09134 Invasin, domain 3 LDH63_00770 PF07694 5TMR of 5TMR-LYT LDH63_00770 PF06580 Histidine kinase LDH63_00775 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) LDH63_00775 PF00128 Alpha amylase, catalytic domain LDH63_00775 PF02806 Alpha amylase, C-terminal all-beta domain LDH63_00780 PF00128 Alpha amylase, catalytic domain LDH63_00780 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) LDH63_00780 PF18390 Glycogen debranching enzyme C-terminal domain LDH63_00785 PF00483 Nucleotidyl transferase LDH63_00790 PF00534 Glycosyl transferases group 1 LDH63_00790 PF08323 Starch synthase catalytic domain LDH63_00795 PF00343 Carbohydrate phosphorylase LDH63_00800 PF01266 FAD dependent oxidoreductase LDH63_00800 PF16901 C-terminal domain of alpha-glycerophosphate oxidase LDH63_00820 PF08220 DeoR-like helix-turn-helix domain LDH63_00820 PF00455 DeoR C terminal sensor domain LDH63_00825 PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease LDH63_00825 PF01694 Rhomboid family LDH63_00830 PF00581 Rhodanese-like domain LDH63_00835 PF00196 Bacterial regulatory proteins, luxR family LDH63_00835 PF17874 MalT-like TPR region LDH63_00845 PF02446 4-alpha-glucanotransferase LDH63_00850 PF01106 NifU-like domain LDH63_00850 PF01521 Iron-sulphur cluster biosynthesis LDH63_00855 PF00156 Phosphoribosyl transferase domain LDH63_00860 PF00561 alpha/beta hydrolase fold LDH63_00865 PF07338 Protein of unknown function (DUF1471) LDH63_00870 PF09012 FeoC like transcriptional regulator LDH63_00875 PF17910 FeoB cytosolic helical domain LDH63_00875 PF07670 Nucleoside recognition LDH63_00875 PF07664 Ferrous iron transport protein B C terminus LDH63_00875 PF02421 Ferrous iron transport protein B LDH63_00880 PF04023 FeoA domain LDH63_00885 PF16921 Tex protein YqgF-like domain LDH63_00885 PF09371 Tex-like protein N-terminal domain LDH63_00885 PF00575 S1 RNA binding domain LDH63_00885 PF17674 HHH domain LDH63_00890 PF03449 Transcription elongation factor, N-terminal LDH63_00890 PF01272 Transcription elongation factor, GreA/GreB, C-term LDH63_00895 PF00072 Response regulator receiver domain LDH63_00895 PF00486 Transcriptional regulatory protein, C terminal LDH63_00900 PF00672 HAMP domain LDH63_00900 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LDH63_00900 PF00512 His Kinase A (phospho-acceptor) domain LDH63_00905 PF01293 Phosphoenolpyruvate carboxykinase LDH63_00910 PF01430 Hsp33 protein LDH63_00915 PF01479 S4 domain LDH63_00920 PF13419 Haloacid dehalogenase-like hydrolase LDH63_00925 PF07095 Intracellular growth attenuator protein IgaA LDH63_00930 PF00293 NUDIX domain LDH63_00935 PF17092 Penicillin-binding protein OB-like domain LDH63_00935 PF00912 Transglycosylase LDH63_00935 PF00905 Penicillin binding protein transpeptidase domain LDH63_00965 PF03958 Bacterial type II/III secretion system short domain LDH63_00965 PF00263 Bacterial type II and III secretion system protein LDH63_00970 PF01202 Shikimate kinase LDH63_00975 PF01761 3-dehydroquinate synthase LDH63_00980 PF05036 Sporulation related domain LDH63_00985 PF02086 D12 class N6 adenine-specific DNA methyltransferase LDH63_00990 PF00834 Ribulose-phosphate 3 epimerase family LDH63_00995 PF13419 Haloacid dehalogenase-like hydrolase LDH63_01000 PF00579 tRNA synthetases class I (W and Y) LDH63_01005 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases LDH63_01005 PF14824 Sirohaem biosynthesis protein central LDH63_01005 PF10414 Sirohaem synthase dimerisation region LDH63_01010 PF01226 Formate/nitrite transporter LDH63_01015 PF13806 Rieske-like [2Fe-2S] domain LDH63_01020 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain LDH63_01020 PF01077 Nitrite and sulphite reductase 4Fe-4S domain LDH63_01020 PF04324 BFD-like [2Fe-2S] binding domain LDH63_01020 PF18267 Rubredoxin NAD+ reductase C-terminal domain LDH63_01020 PF07992 Pyridine nucleotide-disulphide oxidoreductase LDH63_01025 PF07969 Amidohydrolase family LDH63_01030 PF07690 Major Facilitator Superfamily LDH63_01040 PF00356 Bacterial regulatory proteins, lacI family LDH63_01045 PF02056 Family 4 glycosyl hydrolase LDH63_01045 PF11975 Family 4 glycosyl hydrolase C-terminal domain LDH63_01050 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD LDH63_01055 PF05872 Bacterial protein of unknown function (DUF853) LDH63_01060 PF00117 Glutamine amidotransferase class-I LDH63_01065 PF00202 Aminotransferase class-III LDH63_01070 PF12805 FUSC-like inner membrane protein yccS LDH63_01075 PF00027 Cyclic nucleotide-binding domain LDH63_01075 PF13545 Crp-like helix-turn-helix domain LDH63_01080 PF02566 OsmC-like protein LDH63_01090 PF00485 Phosphoribulokinase / Uridine kinase family LDH63_01095 PF06794 Uncharacterised protein family (UPF0270) LDH63_01100 PF00561 alpha/beta hydrolase fold LDH63_01105 PF01810 LysE type translocator LDH63_01110 PF04069 Substrate binding domain of ABC-type glycine betaine transport system LDH63_01115 PF00005 ABC transporter LDH63_01120 PF00528 Binding-protein-dependent transport system inner membrane component LDH63_01125 PF02668 Taurine catabolism dioxygenase TauD, TfdA family LDH63_01135 PF00535 Glycosyl transferase family 2 LDH63_01145 PF02525 Flavodoxin-like fold LDH63_01150 PF02254 TrkA-N domain LDH63_01150 PF00999 Sodium/hydrogen exchanger family LDH63_01155 PF09526 Probable metal-binding protein (DUF2387) LDH63_01160 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase LDH63_01165 PF04102 SlyX LDH63_01170 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase LDH63_01170 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase LDH63_01175 PF13309 HTH domain LDH63_01175 PF08348 YheO-like PAS domain LDH63_01180 PF02635 DsrE/DsrF-like family LDH63_01185 PF02635 DsrE/DsrF-like family LDH63_01190 PF04077 DsrH like protein LDH63_01195 PF00164 Ribosomal protein S12/S23 LDH63_01200 PF00177 Ribosomal protein S7p/S5e LDH63_01205 PF00679 Elongation factor G C-terminus LDH63_01205 PF03144 Elongation factor Tu domain 2 LDH63_01205 PF00009 Elongation factor Tu GTP binding domain LDH63_01205 PF14492 Elongation Factor G, domain II LDH63_01205 PF03764 Elongation factor G, domain IV LDH63_01210 PF00009 Elongation factor Tu GTP binding domain LDH63_01210 PF03144 Elongation factor Tu domain 2 LDH63_01210 PF03143 Elongation factor Tu C-terminal domain LDH63_01215 PF01797 Transposase IS200 like LDH63_01220 PF04324 BFD-like [2Fe-2S] binding domain LDH63_01225 PF00210 Ferritin-like domain LDH63_01230 PF00338 Ribosomal protein S10p/S20e LDH63_01235 PF00297 Ribosomal protein L3 LDH63_01240 PF00573 Ribosomal protein L4/L1 family LDH63_01245 PF00276 Ribosomal protein L23 LDH63_01250 PF03947 Ribosomal Proteins L2, C-terminal domain LDH63_01250 PF00181 Ribosomal Proteins L2, RNA binding domain LDH63_01255 PF00203 Ribosomal protein S19 LDH63_01260 PF00237 Ribosomal protein L22p/L17e LDH63_01265 PF07650 KH domain LDH63_01265 PF00189 Ribosomal protein S3, C-terminal domain LDH63_01270 PF00252 Ribosomal protein L16p/L10e LDH63_01275 PF00831 Ribosomal L29 protein LDH63_01280 PF00366 Ribosomal protein S17 LDH63_01285 PF00238 Ribosomal protein L14p/L23e LDH63_01290 PF00467 KOW motif LDH63_01290 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 LDH63_01295 PF00281 Ribosomal protein L5 LDH63_01295 PF00673 ribosomal L5P family C-terminus LDH63_01300 PF00253 Ribosomal protein S14p/S29e LDH63_01305 PF00410 Ribosomal protein S8 LDH63_01310 PF00347 Ribosomal protein L6 LDH63_01315 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast LDH63_01320 PF00333 Ribosomal protein S5, N-terminal domain LDH63_01320 PF03719 Ribosomal protein S5, C-terminal domain LDH63_01325 PF00327 Ribosomal protein L30p/L7e LDH63_01330 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A LDH63_01335 PF00344 SecY translocase LDH63_01340 PF00444 Ribosomal protein L36 LDH63_01345 PF00416 Ribosomal protein S13/S18 LDH63_01350 PF00411 Ribosomal protein S11 LDH63_01355 PF00163 Ribosomal protein S4/S9 N-terminal domain LDH63_01355 PF01479 S4 domain LDH63_01360 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain LDH63_01360 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain LDH63_01360 PF01000 RNA polymerase Rpb3/RpoA insert domain LDH63_01365 PF01196 Ribosomal protein L17 LDH63_01370 PF13411 MerR HTH family regulatory protein LDH63_01375 PF03889 Alternative ribosome-rescue factor A LDH63_01380 PF01741 Large-conductance mechanosensitive channel, MscL LDH63_01385 PF02080 TrkA-C domain LDH63_01385 PF02254 TrkA-N domain LDH63_01390 PF01189 16S rRNA methyltransferase RsmB/F LDH63_01390 PF01029 NusB family LDH63_01395 PF02911 Formyl transferase, C-terminal domain LDH63_01395 PF00551 Formyl transferase LDH63_01400 PF01327 Polypeptide deformylase LDH63_01405 PF02481 DNA recombination-mediator protein A LDH63_01405 PF17782 DprA winged helix domain LDH63_01410 PF04361 Protein of unknown function (DUF494) LDH63_01415 PF01396 Topoisomerase DNA binding C4 zinc finger LDH63_01420 PF01300 Telomere recombination LDH63_01425 PF18317 Shikimate 5'-dehydrogenase C-terminal domain LDH63_01425 PF01488 Shikimate / quinate 5-dehydrogenase LDH63_01425 PF08501 Shikimate dehydrogenase substrate binding domain LDH63_01430 PF00132 Bacterial transferase hexapeptide (six repeats) LDH63_01435 PF01695 IstB-like ATP binding protein LDH63_01440 PF00665 Integrase core domain LDH63_01440 PF02796 Helix-turn-helix domain of resolvase LDH63_01475 PF04204 Homoserine O-succinyltransferase LDH63_01480 PF01274 Malate synthase LDH63_01485 PF00463 Isocitrate lyase family LDH63_01490 PF06315 Isocitrate dehydrogenase kinase/phosphatase (AceK) LDH63_01500 PF02310 B12 binding domain LDH63_01500 PF02607 B12 binding domain LDH63_01500 PF02965 Vitamin B12 dependent methionine synthase, activation domain LDH63_01500 PF00809 Pterin binding enzyme LDH63_01500 PF02574 Homocysteine S-methyltransferase LDH63_01505 PF13332 Hemagglutinin repeat LDH63_01505 PF05860 haemagglutination activity domain LDH63_01510 PF08479 POTRA domain, ShlB-type LDH63_01510 PF17287 POTRA domain LDH63_01510 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB LDH63_01515 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB LDH63_01515 PF17287 POTRA domain LDH63_01515 PF08479 POTRA domain, ShlB-type LDH63_01520 PF00696 Amino acid kinase family LDH63_01520 PF01842 ACT domain LDH63_01525 PF00342 Phosphoglucose isomerase LDH63_01530 PF06146 Phosphate-starvation-inducible E LDH63_01535 PF00528 Binding-protein-dependent transport system inner membrane component LDH63_01540 PF14785 Maltose transport system permease protein MalF P2 domain LDH63_01540 PF00528 Binding-protein-dependent transport system inner membrane component LDH63_01545 PF01547 Bacterial extracellular solute-binding protein LDH63_01555 PF17912 MalK OB fold domain LDH63_01555 PF00005 ABC transporter LDH63_01560 PF02264 LamB porin LDH63_01565 PF07148 Maltose operon periplasmic protein precursor (MalM) LDH63_01575 PF05638 Type VI secretion system effector, Hcp LDH63_01585 PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath LDH63_01595 PF05947 Type VI secretion system, TssF LDH63_01605 PF00311 Phosphoenolpyruvate carboxylase LDH63_01610 PF01546 Peptidase family M20/M25/M40 LDH63_01610 PF07687 Peptidase dimerisation domain LDH63_01615 PF01118 Semialdehyde dehydrogenase, NAD binding domain LDH63_01615 PF02774 Semialdehyde dehydrogenase, dimerisation domain LDH63_01620 PF00696 Amino acid kinase family LDH63_01625 PF14698 Argininosuccinate lyase C-terminal LDH63_01625 PF00206 Lyase LDH63_01630 PF07715 TonB-dependent Receptor Plug Domain LDH63_01630 PF00593 TonB dependent receptor LDH63_01640 PF00005 ABC transporter LDH63_01640 PF00664 ABC transporter transmembrane region LDH63_01645 PF00529 HlyD membrane-fusion protein of T1SS LDH63_01650 PF03544 Gram-negative bacterial TonB protein C-terminal LDH63_01655 PF07992 Pyridine nucleotide-disulphide oxidoreductase LDH63_01655 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain LDH63_01660 PF00462 Glutaredoxin LDH63_01660 PF08534 Redoxin LDH63_01665 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LDH63_01665 PF03466 LysR substrate binding domain LDH63_01670 PF07992 Pyridine nucleotide-disulphide oxidoreductase LDH63_01670 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain LDH63_01675 PF00440 Bacterial regulatory proteins, tetR family LDH63_01680 PF07226 Protein of unknown function (DUF1422) LDH63_01685 PF05958 tRNA (Uracil-5-)-methyltransferase LDH63_01690 PF07715 TonB-dependent Receptor Plug Domain LDH63_01690 PF00593 TonB dependent receptor LDH63_01695 PF01177 Asp/Glu/Hydantoin racemase LDH63_01730 PF13407 Periplasmic binding protein domain LDH63_01735 PF00005 ABC transporter LDH63_01740 PF02653 Branched-chain amino acid transport system / permease component LDH63_01745 PF02653 Branched-chain amino acid transport system / permease component LDH63_01750 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LDH63_01750 PF03466 LysR substrate binding domain LDH63_01755 PF04219 Protein of unknown function, DUF LDH63_01760 PF01078 Magnesium chelatase, subunit ChlI LDH63_01760 PF13335 Magnesium chelatase, subunit ChlI C-terminal LDH63_01765 PF08046 IlvGEDA operon leader peptide LDH63_01770 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain LDH63_01770 PF00205 Thiamine pyrophosphate enzyme, central domain LDH63_01770 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain LDH63_01780 PF01063 Amino-transferase class IV LDH63_01785 PF00920 Dehydratase family LDH63_01790 PF00291 Pyridoxal-phosphate dependent enzyme LDH63_01790 PF00585 C-terminal regulatory domain of Threonine dehydratase LDH63_01820 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LDH63_01820 PF03466 LysR substrate binding domain LDH63_01825 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain LDH63_01825 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain LDH63_01850 PF01320 Colicin immunity protein / pyocin immunity protein LDH63_01855 PF02753 Pili assembly chaperone PapD, C-terminal domain LDH63_01855 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain LDH63_01865 PF13953 PapC C-terminal domain LDH63_01865 PF13954 PapC N-terminal domain LDH63_01865 PF00577 Outer membrane usher protein LDH63_01870 PF02753 Pili assembly chaperone PapD, C-terminal domain LDH63_01870 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain LDH63_01880 PF00872 Transposase, Mutator family LDH63_01900 PF00580 UvrD/REP helicase N-terminal domain LDH63_01900 PF13361 UvrD-like helicase C-terminal domain LDH63_01910 PF00270 DEAD/DEAH box helicase LDH63_01910 PF00271 Helicase conserved C-terminal domain LDH63_01915 PF00085 Thioredoxin LDH63_01920 PF07497 Rho termination factor, RNA-binding domain LDH63_01920 PF07498 Rho termination factor, N-terminal domain LDH63_01920 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain LDH63_01925 PF00953 Glycosyl transferase family 4 LDH63_01930 PF02706 Chain length determinant protein LDH63_01935 PF02350 UDP-N-acetylglucosamine 2-epimerase LDH63_01940 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain LDH63_01940 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain LDH63_01940 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain LDH63_01945 PF16363 GDP-mannose 4,6 dehydratase LDH63_01950 PF00483 Nucleotidyl transferase LDH63_01960 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family LDH63_01965 PF01943 Polysaccharide biosynthesis protein LDH63_01970 PF07429 4-alpha-L-fucosyltransferase glycosyl transferase group 56 LDH63_01975 PF06899 WzyE protein, O-antigen assembly polymerase LDH63_01980 PF03808 Glycosyl transferase WecB/TagA/CpsF family LDH63_01985 PF00324 Amino acid permease LDH63_02015 PF07219 HemY protein N-terminus LDH63_02015 PF07719 Tetratricopeptide repeat LDH63_02020 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase LDH63_02025 PF02602 Uroporphyrinogen-III synthase HemD LDH63_02030 PF03900 Porphobilinogen deaminase, C-terminal domain LDH63_02030 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain LDH63_02040 PF12633 Adenylate cyclase NT domain LDH63_02040 PF01295 Adenylate cyclase, class-I LDH63_02045 PF01491 Frataxin-like domain LDH63_02050 PF13627 Prokaryotic lipoprotein-attachment site LDH63_02055 PF01678 Diaminopimelate epimerase LDH63_02060 PF04340 Protein of unknown function, DUF484 LDH63_02065 PF02899 Phage integrase, N-terminal SAM-like domain LDH63_02065 PF00589 Phage integrase family LDH63_02070 PF13419 Haloacid dehalogenase-like hydrolase LDH63_02075 PF00580 UvrD/REP helicase N-terminal domain LDH63_02075 PF13361 UvrD-like helicase C-terminal domain LDH63_02090 PF09370 Phosphoenolpyruvate hydrolase-like LDH63_02095 PF01544 CorA-like Mg2+ transporter protein LDH63_02100 PF00892 EamA-like transporter family LDH63_02105 PF03061 Thioesterase superfamily LDH63_02110 PF02253 Phospholipase A1 LDH63_02115 PF00570 HRDC domain LDH63_02115 PF00270 DEAD/DEAH box helicase LDH63_02115 PF09382 RQC domain LDH63_02115 PF16124 RecQ zinc-binding LDH63_02115 PF00271 Helicase conserved C-terminal domain LDH63_02120 PF01810 LysE type translocator LDH63_02125 PF01810 LysE type translocator LDH63_02130 PF12146 Serine aminopeptidase, S33 LDH63_02145 PF03009 Glycerophosphoryl diester phosphodiesterase family LDH63_02155 PF01266 FAD dependent oxidoreductase LDH63_02155 PF04324 BFD-like [2Fe-2S] binding domain LDH63_02160 PF00890 FAD binding domain LDH63_02165 PF02754 Cysteine-rich domain LDH63_02165 PF13183 4Fe-4S dicluster domain LDH63_02170 PF08786 DcrB LDH63_02175 PF02592 Putative vitamin uptake transporter LDH63_02180 PF01206 Sulfurtransferase TusA LDH63_02185 PF00403 Heavy-metal-associated domain LDH63_02190 PF07947 YhhN family LDH63_02205 PF06611 Protein of unknown function (DUF1145) LDH63_02215 PF00448 SRP54-type protein, GTPase domain LDH63_02215 PF02881 SRP54-type protein, helical bundle domain LDH63_02215 PF00448 SRP54-type protein, GTPase domain LDH63_02215 PF02881 SRP54-type protein, helical bundle domain LDH63_02220 PF00005 ABC transporter LDH63_02225 PF18075 FtsX extracellular domain LDH63_02225 PF02687 FtsX-like permease family LDH63_02230 PF00140 Sigma-70 factor, region 1.2 LDH63_02230 PF04542 Sigma-70 region 2 LDH63_02230 PF04545 Sigma-70, region 4 LDH63_02235 PF01797 Transposase IS200 like LDH63_02240 PF12568 Acetyltransferase (GNAT) domain, PanZ LDH63_02245 PF13458 Periplasmic binding protein LDH63_02250 PF02653 Branched-chain amino acid transport system / permease component LDH63_02255 PF02653 Branched-chain amino acid transport system / permease component LDH63_02255 PF11862 Domain of unknown function (DUF3382) LDH63_02260 PF00005 ABC transporter LDH63_02260 PF12399 Branched-chain amino acid ATP-binding cassette transporter LDH63_02265 PF00005 ABC transporter LDH63_02305 PF13416 Bacterial extracellular solute-binding protein LDH63_02310 PF00528 Binding-protein-dependent transport system inner membrane component LDH63_02315 PF00528 Binding-protein-dependent transport system inner membrane component LDH63_02320 PF00005 ABC transporter LDH63_02320 PF17912 MalK OB fold domain LDH63_02325 PF03009 Glycerophosphoryl diester phosphodiesterase family LDH63_02330 PF03547 Membrane transport protein LDH63_02335 PF00892 EamA-like transporter family LDH63_02340 PF03466 LysR substrate binding domain LDH63_02340 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LDH63_02345 PF01717 Cobalamin-independent synthase, Catalytic domain LDH63_02345 PF08267 Cobalamin-independent synthase, N-terminal domain LDH63_02350 PF01738 Dienelactone hydrolase family LDH63_02355 PF01048 Phosphorylase superfamily LDH63_02365 PF02554 Carbon starvation protein CstA LDH63_02365 PF13722 5TM C-terminal transporter carbon starvation CstA LDH63_02370 PF09335 SNARE associated Golgi protein LDH63_02375 PF02646 RmuC family LDH63_02380 PF01209 ubiE/COQ5 methyltransferase family LDH63_02385 PF02036 SCP-2 sterol transfer family LDH63_02390 PF03109 ABC1 family LDH63_02395 PF02416 mttA/Hcf106 family LDH63_02405 PF00902 Sec-independent protein translocase protein (TatC) LDH63_02415 PF02796 Helix-turn-helix domain of resolvase LDH63_02415 PF00665 Integrase core domain LDH63_02420 PF01695 IstB-like ATP binding protein LDH63_02425 PF01026 TatD related DNase LDH63_02430 PF00490 Delta-aminolevulinic acid dehydratase LDH63_02435 PF02357 Transcription termination factor nusG LDH63_02440 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase LDH63_02445 PF00175 Oxidoreductase NAD-binding domain LDH63_02445 PF00970 Oxidoreductase FAD-binding domain LDH63_02450 PF02803 Thiolase, C-terminal domain LDH63_02450 PF00108 Thiolase, N-terminal domain LDH63_02455 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain LDH63_02455 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain LDH63_02455 PF00378 Enoyl-CoA hydratase/isomerase LDH63_02460 PF00557 Metallopeptidase family M24 LDH63_02465 PF09186 Domain of unknown function (DUF1949) LDH63_02465 PF01205 Uncharacterized protein family UPF0029 LDH63_02480 PF02386 Cation transport protein LDH63_02485 PF12724 Flavodoxin domain LDH63_02515 PF10043 Predicted periplasmic lipoprotein (DUF2279) LDH63_02520 PF13091 PLD-like domain LDH63_02525 PF13607 Succinyl-CoA ligase like flavodoxin domain LDH63_02525 PF13380 CoA binding domain LDH63_02525 PF00583 Acetyltransferase (GNAT) family LDH63_02530 PF03942 DTW domain LDH63_02535 PF00085 Thioredoxin LDH63_02540 PF00588 SpoU rRNA Methylase family LDH63_02540 PF08032 RNA 2'-O ribose methyltransferase substrate binding LDH63_02545 PF07690 Major Facilitator Superfamily LDH63_02550 PF00529 HlyD membrane-fusion protein of T1SS LDH63_02550 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LDH63_02555 PF01047 MarR family LDH63_02560 PF05437 Branched-chain amino acid transport protein (AzlD) LDH63_02565 PF03591 AzlC protein LDH63_02570 PF07690 Major Facilitator Superfamily LDH63_02580 PF01425 Amidase LDH63_02595 PF00497 Bacterial extracellular solute-binding proteins, family 3 LDH63_02600 PF00528 Binding-protein-dependent transport system inner membrane component LDH63_02605 PF00528 Binding-protein-dependent transport system inner membrane component LDH63_02610 PF00005 ABC transporter LDH63_02620 PF01695 IstB-like ATP binding protein LDH63_02625 PF00665 Integrase core domain LDH63_02625 PF02796 Helix-turn-helix domain of resolvase LDH63_02635 PF07687 Peptidase dimerisation domain LDH63_02635 PF01546 Peptidase family M20/M25/M40 LDH63_02645 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB LDH63_02645 PF08479 POTRA domain, ShlB-type LDH63_02650 PF05860 haemagglutination activity domain LDH63_02655 PF18254 HMW1 domain 2 LDH63_02655 PF18071 HMW1C N-terminal LDH63_02665 PF00441 Acyl-CoA dehydrogenase, C-terminal domain LDH63_02665 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LDH63_02665 PF09317 Domain of unknown function (DUF1974) LDH63_02670 PF13580 SIS domain LDH63_02675 PF13230 Glutamine amidotransferases class-II LDH63_02680 PF03734 L,D-transpeptidase catalytic domain LDH63_02690 PF11973 NQRA C-terminal domain LDH63_02690 PF05896 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) LDH63_02695 PF03116 NQR2, RnfD, RnfE family LDH63_02700 PF04205 FMN-binding domain LDH63_02705 PF02508 Rnf-Nqr subunit, membrane protein LDH63_02710 PF02508 Rnf-Nqr subunit, membrane protein LDH63_02715 PF00970 Oxidoreductase FAD-binding domain LDH63_02715 PF00111 2Fe-2S iron-sulfur cluster binding domain LDH63_02715 PF00175 Oxidoreductase NAD-binding domain LDH63_02720 PF02424 ApbE family LDH63_02730 PF03009 Glycerophosphoryl diester phosphodiesterase family LDH63_02735 PF00817 impB/mucB/samB family LDH63_02735 PF11799 impB/mucB/samB family C-terminal domain LDH63_02735 PF11798 IMS family HHH motif LDH63_02740 PF07687 Peptidase dimerisation domain LDH63_02740 PF01546 Peptidase family M20/M25/M40 LDH63_02745 PF03466 LysR substrate binding domain LDH63_02745 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LDH63_02760 PF00156 Phosphoribosyl transferase domain LDH63_02765 PF06500 Alpha/beta hydrolase of unknown function (DUF1100) LDH63_02770 PF07417 Sigma factor-binding transcriptional regulator Crl LDH63_02775 PF00696 Amino acid kinase family LDH63_02775 PF01472 PUA domain LDH63_02780 PF00171 Aldehyde dehydrogenase family LDH63_02785 PF07238 PilZ domain LDH63_02785 PF07317 Flagellar regulator YcgR LDH63_02805 PF01202 Shikimate kinase LDH63_02810 PF06865 Pyrimidine/purine nucleoside phosphorylase LDH63_02815 PF04381 Putative exonuclease, RdgC LDH63_02820 PF00480 ROK family LDH63_02825 PF13476 AAA domain LDH63_02830 PF12320 Type 5 capsule protein repressor C-terminal domain LDH63_02830 PF00149 Calcineurin-like phosphoesterase LDH63_02835 PF00072 Response regulator receiver domain LDH63_02835 PF00486 Transcriptional regulatory protein, C terminal LDH63_02840 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LDH63_02840 PF00512 His Kinase A (phospho-acceptor) domain LDH63_02840 PF00989 PAS fold LDH63_02840 PF11808 Phosphate regulon sensor protein PhoR LDH63_02845 PF12849 PBP superfamily domain LDH63_02850 PF05525 Branched-chain amino acid transport protein LDH63_02855 PF00324 Amino acid permease LDH63_02860 PF00128 Alpha amylase, catalytic domain LDH63_02860 PF02903 Alpha amylase, N-terminal ig-like domain LDH63_02880 PF10417 C-terminal domain of 1-Cys peroxiredoxin LDH63_02880 PF00578 AhpC/TSA family LDH63_02885 PF04336 Acyl carrier protein phosphodiesterase LDH63_02890 PF02547 Queuosine biosynthesis protein LDH63_02895 PF01702 Queuine tRNA-ribosyltransferase LDH63_02900 PF02699 Preprotein translocase subunit LDH63_02905 PF07549 SecD/SecF GG Motif LDH63_02905 PF13721 SecD export protein N-terminal TM region LDH63_02905 PF02355 Protein export membrane protein LDH63_02910 PF07549 SecD/SecF GG Motif LDH63_02910 PF02355 Protein export membrane protein LDH63_02920 PF01797 Transposase IS200 like LDH63_02935 PF03477 ATP cone domain LDH63_02940 PF01872 RibD C-terminal domain LDH63_02940 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region LDH63_02945 PF00885 6,7-dimethyl-8-ribityllumazine synthase LDH63_02950 PF01029 NusB family LDH63_02955 PF00586 AIR synthase related protein, N-terminal domain LDH63_02955 PF02769 AIR synthase related protein, C-terminal domain LDH63_02960 PF04608 Phosphatidylglycerophosphatase A LDH63_02970 PF02779 Transketolase, pyrimidine binding domain LDH63_02970 PF02780 Transketolase, C-terminal domain LDH63_02970 PF13292 1-deoxy-D-xylulose-5-phosphate synthase LDH63_02975 PF00348 Polyprenyl synthetase LDH63_02980 PF02609 Exonuclease VII small subunit LDH63_02985 PF02568 Thiamine biosynthesis protein (ThiI) LDH63_02985 PF02926 THUMP domain LDH63_02990 PF01965 DJ-1/PfpI family LDH63_02995 PF08546 Ketopantoate reductase PanE/ApbA C terminal LDH63_02995 PF02558 Ketopantoate reductase PanE/ApbA LDH63_03000 PF04461 Protein of unknown function (DUF520) LDH63_03005 PF07690 Major Facilitator Superfamily LDH63_03010 PF01040 UbiA prenyltransferase family LDH63_03015 PF03626 Prokaryotic Cytochrome C oxidase subunit IV LDH63_03020 PF00510 Cytochrome c oxidase subunit III LDH63_03025 PF00115 Cytochrome C and Quinol oxidase polypeptide I LDH63_03030 PF06481 COX Aromatic Rich Motif LDH63_03030 PF00116 Cytochrome C oxidase subunit II, periplasmic domain LDH63_03035 PF03502 Nucleoside-specific channel-forming protein, Tsx LDH63_03040 PF07690 Major Facilitator Superfamily LDH63_03045 PF03923 Uncharacterized lipoprotein LDH63_03045 PF08139 Prokaryotic membrane lipoprotein lipid attachment site LDH63_03050 PF01722 BolA-like protein LDH63_03055 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase LDH63_03055 PF05698 Bacterial trigger factor protein (TF) C-terminus LDH63_03055 PF05697 Bacterial trigger factor protein (TF) LDH63_03060 PF00574 Clp protease LDH63_03065 PF10431 C-terminal, D2-small domain, of ClpB protein LDH63_03065 PF07724 AAA domain (Cdc48 subfamily) LDH63_03065 PF06689 ClpX C4-type zinc finger LDH63_03070 PF02190 ATP-dependent protease La (LON) substrate-binding domain LDH63_03070 PF05362 Lon protease (S16) C-terminal proteolytic domain LDH63_03070 PF00004 ATPase family associated with various cellular activities (AAA) LDH63_03075 PF00216 Bacterial DNA-binding protein LDH63_03080 PF13145 PPIC-type PPIASE domain LDH63_03095 PF06508 Queuosine biosynthesis protein QueC LDH63_03100 PF12793 Sugar transport-related sRNA regulator N-term LDH63_03100 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle LDH63_03110 PF00291 Pyridoxal-phosphate dependent enzyme LDH63_03115 PF13404 AsnC-type helix-turn-helix domain LDH63_03115 PF01037 Lrp/AsnC ligand binding domain LDH63_03120 PF00005 ABC transporter LDH63_03120 PF00664 ABC transporter transmembrane region LDH63_03125 PF00005 ABC transporter LDH63_03125 PF00664 ABC transporter transmembrane region LDH63_03130 PF00543 Nitrogen regulatory protein P-II LDH63_03135 PF00909 Ammonium Transporter Family LDH63_03145 PF09619 Type III secretion system lipoprotein chaperone (YscW) LDH63_03150 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain LDH63_03160 PF05321 Haemolysin expression modulating protein LDH63_03165 PF10757 Biofilm formation regulator YbaJ LDH63_03175 PF00444 Ribosomal protein L36 LDH63_03180 PF01197 Ribosomal protein L31 LDH63_03185 PF00873 AcrB/AcrD/AcrF family LDH63_03190 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LDH63_03190 PF00529 HlyD membrane-fusion protein of T1SS LDH63_03195 PF00440 Bacterial regulatory proteins, tetR family LDH63_03195 PF08361 MAATS-type transcriptional repressor, C-terminal region LDH63_03200 PF02635 DsrE/DsrF-like family LDH63_03205 PF00924 Mechanosensitive ion channel LDH63_03205 PF12794 Mechanosensitive ion channel inner membrane domain 1 LDH63_03205 PF12795 Mechanosensitive ion channel porin domain LDH63_03210 PF10689 Protein of unknown function (DUF2496) LDH63_03220 PF04304 Protein of unknown function (DUF454) LDH63_03225 PF00156 Phosphoribosyl transferase domain LDH63_03230 PF12170 DNA polymerase III tau subunit V interacting with alpha LDH63_03230 PF12169 DNA polymerase III subunits gamma and tau domain III LDH63_03230 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding LDH63_03235 PF02575 YbaB/EbfC DNA-binding family LDH63_03240 PF13662 Toprim domain LDH63_03240 PF02132 RecR protein LDH63_03245 PF00183 Hsp90 protein LDH63_03245 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LDH63_03250 PF05191 Adenylate kinase, active site lid LDH63_03255 PF00762 Ferrochelatase LDH63_03260 PF00111 2Fe-2S iron-sulfur cluster binding domain LDH63_03260 PF00175 Oxidoreductase NAD-binding domain LDH63_03260 PF00970 Oxidoreductase FAD-binding domain LDH63_03265 PF00483 Nucleotidyl transferase LDH63_03270 PF16363 GDP-mannose 4,6 dehydratase LDH63_03275 PF16363 GDP-mannose 4,6 dehydratase LDH63_03280 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family LDH63_03285 PF01370 NAD dependent epimerase/dehydratase family LDH63_03315 PF00534 Glycosyl transferases group 1 LDH63_03315 PF13439 Glycosyltransferase Family 4 LDH63_03325 PF01370 NAD dependent epimerase/dehydratase family LDH63_03330 PF01050 Mannose-6-phosphate isomerase LDH63_03330 PF00483 Nucleotidyl transferase LDH63_03335 PF00535 Glycosyl transferase family 2 LDH63_03340 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I LDH63_03340 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II LDH63_03340 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain LDH63_03340 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III LDH63_03345 PF02706 Chain length determinant protein LDH63_03350 PF00294 pfkB family carbohydrate kinase LDH63_03355 PF00999 Sodium/hydrogen exchanger family LDH63_03355 PF02254 TrkA-N domain LDH63_03360 PF07690 Major Facilitator Superfamily LDH63_03365 PF02872 5'-nucleotidase, C-terminal domain LDH63_03365 PF00149 Calcineurin-like phosphoesterase LDH63_03370 PF02872 5'-nucleotidase, C-terminal domain LDH63_03370 PF00149 Calcineurin-like phosphoesterase LDH63_03375 PF00149 Calcineurin-like phosphoesterase LDH63_03375 PF02872 5'-nucleotidase, C-terminal domain LDH63_03390 PF04073 Aminoacyl-tRNA editing domain LDH63_03395 PF01963 TraB family LDH63_03400 PF00403 Heavy-metal-associated domain LDH63_03405 PF13411 MerR HTH family regulatory protein LDH63_03410 PF01957 NfeD-like C-terminal, partner-binding LDH63_03415 PF01145 SPFH domain / Band 7 family LDH63_03415 PF16200 C-terminal region of band_7 LDH63_03420 PF00085 Thioredoxin LDH63_03425 PF00106 short chain dehydrogenase LDH63_03430 PF13472 GDSL-like Lipase/Acylhydrolase family LDH63_03435 PF00005 ABC transporter LDH63_03445 PF02222 ATP-grasp domain LDH63_03445 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain LDH63_03450 PF00731 AIR carboxylase LDH63_03455 PF00149 Calcineurin-like phosphoesterase LDH63_03460 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD LDH63_03465 PF09190 DALR domain LDH63_03465 PF01406 tRNA synthetases class I (C) catalytic domain LDH63_03470 PF01797 Transposase IS200 like LDH63_03480 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain LDH63_03480 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain LDH63_03510 PF00589 Phage integrase family LDH63_03520 PF01066 CDP-alcohol phosphatidyltransferase LDH63_03530 PF01553 Acyltransferase LDH63_03535 PF12147 Putative methyltransferase LDH63_03535 PF12146 Serine aminopeptidase, S33 LDH63_03540 PF00782 Dual specificity phosphatase, catalytic domain LDH63_03555 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LDH63_03555 PF03466 LysR substrate binding domain LDH63_03560 PF00248 Aldo/keto reductase family LDH63_03565 PF00248 Aldo/keto reductase family LDH63_03575 PF00665 Integrase core domain LDH63_03575 PF02796 Helix-turn-helix domain of resolvase LDH63_03580 PF01695 IstB-like ATP binding protein LDH63_03590 PF14310 Fibronectin type III-like domain LDH63_03590 PF00933 Glycosyl hydrolase family 3 N terminal domain LDH63_03590 PF01915 Glycosyl hydrolase family 3 C-terminal domain LDH63_03605 PF00872 Transposase, Mutator family LDH63_03625 PF16168 Adhesin of bacterial autotransporter system, probable stalk LDH63_03625 PF03797 Autotransporter beta-domain LDH63_03625 PF13018 Extended Signal Peptide of Type V secretion system LDH63_03625 PF03212 Pertactin LDH63_03640 PF05638 Type VI secretion system effector, Hcp LDH63_03660 PF13693 Winged helix-turn-helix DNA-binding LDH63_03665 PF00905 Penicillin binding protein transpeptidase domain LDH63_03665 PF06832 Penicillin-Binding Protein C-terminus Family LDH63_03665 PF00912 Transglycosylase LDH63_03670 PF00207 Alpha-2-macroglobulin family LDH63_03670 PF07703 Alpha-2-macroglobulin bait region domain LDH63_03670 PF17973 Bacterial Alpha-2-macroglobulin MG10 domain LDH63_03670 PF11974 Bacterial alpha-2-macroglobulin MG3 domain LDH63_03670 PF17972 Bacterial Alpha-2-macroglobulin MG5 domain LDH63_03670 PF17962 Bacterial macroglobulin domain 6 LDH63_03670 PF01835 MG2 domain LDH63_03685 PF00171 Aldehyde dehydrogenase family LDH63_03690 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain LDH63_03690 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain LDH63_03690 PF00205 Thiamine pyrophosphate enzyme, central domain LDH63_03700 PF13407 Periplasmic binding protein domain LDH63_03705 PF00005 ABC transporter LDH63_03710 PF02653 Branched-chain amino acid transport system / permease component LDH63_03715 PF01408 Oxidoreductase family, NAD-binding Rossmann fold LDH63_03715 PF02894 Oxidoreductase family, C-terminal alpha/beta domain LDH63_03720 PF00294 pfkB family carbohydrate kinase LDH63_03725 PF01261 Xylose isomerase-like TIM barrel LDH63_03730 PF04962 KduI/IolB family LDH63_03740 PF00664 ABC transporter transmembrane region LDH63_03740 PF00005 ABC transporter LDH63_03765 PF00196 Bacterial regulatory proteins, luxR family LDH63_03770 PF00313 'Cold-shock' DNA-binding domain LDH63_03775 PF00313 'Cold-shock' DNA-binding domain LDH63_03780 PF02537 CrcB-like protein, Camphor Resistance (CrcB) LDH63_03785 PF02416 mttA/Hcf106 family LDH63_03790 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family LDH63_03790 PF04055 Radical SAM superfamily LDH63_03795 PF03099 Biotin/lipoate A/B protein ligase family LDH63_03800 PF04359 Protein of unknown function (DUF493) LDH63_03805 PF07943 Penicillin-binding protein 5, C-terminal domain LDH63_03805 PF00768 D-alanyl-D-alanine carboxypeptidase LDH63_03810 PF03330 Lytic transglycolase LDH63_03810 PF05036 Sporulation related domain LDH63_03815 PF01098 Cell cycle protein LDH63_03820 PF03717 Penicillin-binding Protein dimerisation domain LDH63_03820 PF00905 Penicillin binding protein transpeptidase domain LDH63_03825 PF02590 Predicted SPOUT methyltransferase LDH63_03835 PF01467 Cytidylyltransferase-like LDH63_03840 PF14840 Processivity clamp loader gamma complex DNA pol III C-term LDH63_03840 PF06144 DNA polymerase III, delta subunit LDH63_03845 PF04390 Lipopolysaccharide-assembly LDH63_03850 PF13603 Leucyl-tRNA synthetase, Domain 2 LDH63_03850 PF08264 Anticodon-binding domain of tRNA LDH63_03850 PF00133 tRNA synthetases class I (I, L, M and V) LDH63_03855 PF07295 Zinc-ribbon containing domain LDH63_03860 PF00005 ABC transporter LDH63_03865 PF00528 Binding-protein-dependent transport system inner membrane component LDH63_03870 PF00528 Binding-protein-dependent transport system inner membrane component LDH63_03875 PF00497 Bacterial extracellular solute-binding proteins, family 3 LDH63_03880 PF00795 Carbon-nitrogen hydrolase LDH63_03885 PF00571 CBS domain LDH63_03885 PF03471 Transporter associated domain LDH63_03890 PF02130 Uncharacterized protein family UPF0054 LDH63_03895 PF02562 PhoH-like protein LDH63_03900 PF04055 Radical SAM superfamily LDH63_03900 PF01938 TRAM domain LDH63_03900 PF00919 Uncharacterized protein family UPF0004 LDH63_03905 PF01494 FAD binding domain LDH63_03940 PF13537 Glutamine amidotransferase domain LDH63_03940 PF00733 Asparagine synthase LDH63_03945 PF13344 Haloacid dehalogenase-like hydrolase LDH63_03950 PF01047 MarR family LDH63_03950 PF00480 ROK family LDH63_03955 PF01979 Amidohydrolase family LDH63_03960 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase LDH63_03965 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 LDH63_03965 PF02378 Phosphotransferase system, EIIC LDH63_03965 PF00367 phosphotransferase system, EIIB LDH63_03970 PF01797 Transposase IS200 like LDH63_03975 PF01797 Transposase IS200 like LDH63_03980 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain LDH63_03980 PF00749 tRNA synthetases class I (E and Q), catalytic domain LDH63_03985 PF03573 outer membrane porin, OprD family LDH63_03995 PF01475 Ferric uptake regulator family LDH63_04000 PF00258 Flavodoxin LDH63_04010 PF01402 Ribbon-helix-helix protein, copG family LDH63_04015 PF12697 Alpha/beta hydrolase family LDH63_04025 PF13356 Arm DNA-binding domain LDH63_04025 PF00589 Phage integrase family LDH63_04040 PF01695 IstB-like ATP binding protein LDH63_04045 PF00665 Integrase core domain LDH63_04045 PF02796 Helix-turn-helix domain of resolvase LDH63_04055 PF04069 Substrate binding domain of ABC-type glycine betaine transport system LDH63_04060 PF00528 Binding-protein-dependent transport system inner membrane component LDH63_04065 PF00571 CBS domain LDH63_04065 PF00005 ABC transporter LDH63_04070 PF00268 Ribonucleotide reductase, small chain LDH63_04075 PF02867 Ribonucleotide reductase, barrel domain LDH63_04075 PF00317 Ribonucleotide reductase, all-alpha domain LDH63_04075 PF08343 Ribonucleotide reductase N-terminal LDH63_04080 PF07972 NrdI Flavodoxin like LDH63_04090 PF06392 Acid shock protein repeat LDH63_04095 PF09400 Protein of unknown function (DUF2002) LDH63_04100 PF06711 Protein of unknown function (DUF1198) LDH63_04110 PF00313 'Cold-shock' DNA-binding domain LDH63_04115 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle LDH63_04120 PF00528 Binding-protein-dependent transport system inner membrane component LDH63_04125 PF00528 Binding-protein-dependent transport system inner membrane component LDH63_04125 PF12911 N-terminal TM domain of oligopeptide transport permease C LDH63_04130 PF00005 ABC transporter LDH63_04135 PF00005 ABC transporter LDH63_04140 PF00547 Urease, gamma subunit LDH63_04145 PF00699 Urease beta subunit LDH63_04150 PF00449 Urease alpha-subunit, N-terminal domain LDH63_04150 PF01979 Amidohydrolase family LDH63_04155 PF05194 UreE urease accessory protein, C-terminal domain LDH63_04155 PF02814 UreE urease accessory protein, N-terminal domain LDH63_04160 PF01730 UreF LDH63_04165 PF02492 CobW/HypB/UreG, nucleotide-binding domain LDH63_04170 PF01774 UreD urease accessory protein LDH63_04175 PF01774 UreD urease accessory protein LDH63_04180 PF03253 Urea transporter LDH63_04185 PF03824 High-affinity nickel-transport protein LDH63_04190 PF06411 HdeA/HdeB family LDH63_04195 PF02254 TrkA-N domain LDH63_04195 PF07885 Ion channel LDH63_04200 PF02537 CrcB-like protein, Camphor Resistance (CrcB) LDH63_04205 PF02537 CrcB-like protein, Camphor Resistance (CrcB) LDH63_04215 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit LDH63_04220 PF02378 Phosphotransferase system, EIIC LDH63_04225 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit LDH63_04230 PF07883 Cupin domain LDH63_04230 PF12833 Helix-turn-helix domain LDH63_04235 PF04794 YdjC-like protein LDH63_04245 PF17206 SeqA protein N-terminal domain LDH63_04245 PF03925 SeqA protein C-terminal domain LDH63_04250 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III LDH63_04250 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I LDH63_04250 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II LDH63_04250 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain LDH63_04265 PF00072 Response regulator receiver domain LDH63_04265 PF00486 Transcriptional regulatory protein, C terminal LDH63_04270 PF13493 Domain of unknown function (DUF4118) LDH63_04270 PF13492 GAF domain LDH63_04270 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LDH63_04270 PF00512 His Kinase A (phospho-acceptor) domain LDH63_04270 PF02702 Osmosensitive K+ channel His kinase sensor domain LDH63_04275 PF02669 K+-transporting ATPase, c chain LDH63_04285 PF03814 Potassium-transporting ATPase A subunit LDH63_04300 PF10725 Protein of unknown function (DUF2517) LDH63_04305 PF08349 Protein of unknown function (DUF1722) LDH63_04310 PF00875 DNA photolyase LDH63_04310 PF03441 FAD binding domain of DNA photolyase LDH63_04315 PF02112 cAMP phosphodiesterases class-II LDH63_04320 PF01784 NIF3 (NGG1p interacting factor 3) LDH63_04335 PF02626 Carboxyltransferase domain, subdomain A and B LDH63_04340 PF03746 LamB/YcsF family LDH63_04355 PF01470 Pyroglutamyl peptidase LDH63_04360 PF03167 Uracil DNA glycosylase superfamily LDH63_04365 PF01228 Glycine radical LDH63_04375 PF12796 Ankyrin repeats (3 copies) LDH63_04380 PF00271 Helicase conserved C-terminal domain LDH63_04380 PF00270 DEAD/DEAH box helicase LDH63_04385 PF05175 Methyltransferase small domain LDH63_04395 PF00890 FAD binding domain LDH63_04395 PF02910 Fumarate reductase flavoprotein C-term LDH63_04400 PF04542 Sigma-70 region 2 LDH63_04400 PF08281 Sigma-70, region 4 LDH63_04405 PF03873 Anti sigma-E protein RseA, C-terminal domain LDH63_04405 PF03872 Anti sigma-E protein RseA, N-terminal domain LDH63_04410 PF03888 MucB/RseB N-terminal domain LDH63_04410 PF17188 MucB/RseB C-terminal domain LDH63_04425 PF00679 Elongation factor G C-terminus LDH63_04425 PF00009 Elongation factor Tu GTP binding domain LDH63_04425 PF03144 Elongation factor Tu domain 2 LDH63_04425 PF06421 GTP-binding protein LepA C-terminus LDH63_04430 PF10502 Signal peptidase, peptidase S26 LDH63_04435 PF00035 Double-stranded RNA binding motif LDH63_04435 PF14622 Ribonuclease-III-like LDH63_04440 PF01926 50S ribosome-binding GTPase LDH63_04440 PF07650 KH domain LDH63_04445 PF02565 Recombination protein O C terminal LDH63_04445 PF11967 Recombination protein O N terminal LDH63_04450 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ LDH63_04455 PF01648 4'-phosphopantetheinyl transferase superfamily LDH63_04460 PF01797 Transposase IS200 like LDH63_04465 PF12838 4Fe-4S dicluster domain LDH63_04470 PF01418 Helix-turn-helix domain, rpiR family LDH63_04470 PF01380 SIS domain LDH63_04475 PF01380 SIS domain LDH63_04485 PF14437 MafB19-like deaminase LDH63_04490 PF00497 Bacterial extracellular solute-binding proteins, family 3 LDH63_04490 PF01464 Transglycosylase SLT domain LDH63_04495 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal LDH63_04495 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain LDH63_04495 PF02769 AIR synthase related protein, C-terminal domain LDH63_04525 PF00512 His Kinase A (phospho-acceptor) domain LDH63_04525 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LDH63_04540 PF00072 Response regulator receiver domain LDH63_04540 PF00158 Sigma-54 interaction domain LDH63_04545 PF02540 NAD synthase LDH63_04545 PF00795 Carbon-nitrogen hydrolase LDH63_04550 PF00543 Nitrogen regulatory protein P-II LDH63_04560 PF00970 Oxidoreductase FAD-binding domain LDH63_04560 PF00175 Oxidoreductase NAD-binding domain LDH63_04560 PF00042 Globin LDH63_04565 PF00464 Serine hydroxymethyltransferase LDH63_04575 PF13505 Outer membrane protein beta-barrel domain LDH63_04580 PF12832 MFS_1 like family LDH63_04585 PF00874 PRD domain LDH63_04590 PF06226 Protein of unknown function (DUF1007) LDH63_04595 PF03824 High-affinity nickel-transport protein LDH63_04600 PF00459 Inositol monophosphatase family LDH63_04605 PF00588 SpoU rRNA Methylase family LDH63_04610 PF02082 Transcriptional regulator LDH63_04615 PF00266 Aminotransferase class-V LDH63_04620 PF01592 NifU-like N terminal domain LDH63_04625 PF01521 Iron-sulphur cluster biosynthesis LDH63_04630 PF00226 DnaJ domain LDH63_04630 PF07743 HSCB C-terminal oligomerisation domain LDH63_04635 PF00012 Hsp70 protein LDH63_04640 PF00111 2Fe-2S iron-sulfur cluster binding domain LDH63_04645 PF04384 Iron-sulphur cluster assembly LDH63_04650 PF12404 Peptidase LDH63_04650 PF00883 Cytosol aminopeptidase family, catalytic domain LDH63_04655 PF07179 SseB protein N-terminal domain LDH63_04655 PF14581 SseB protein C-terminal domain LDH63_04670 PF03212 Pertactin LDH63_04670 PF03797 Autotransporter beta-domain LDH63_04670 PF16168 Adhesin of bacterial autotransporter system, probable stalk LDH63_04680 PF00334 Nucleoside diphosphate kinase LDH63_04685 PF04055 Radical SAM superfamily LDH63_04695 PF13464 Domain of unknown function (DUF4115) LDH63_04700 PF04551 GcpE protein LDH63_04705 PF03129 Anticodon binding domain LDH63_04705 PF13393 Histidyl-tRNA synthetase LDH63_04710 PF09976 Tetratricopeptide repeat-like domain LDH63_04715 PF13360 PQQ-like domain LDH63_04720 PF01926 50S ribosome-binding GTPase LDH63_04720 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal LDH63_04730 PF07191 zinc-ribbons LDH63_04735 PF13742 OB-fold nucleic acid binding domain LDH63_04735 PF02601 Exonuclease VII, large subunit LDH63_04740 PF00478 IMP dehydrogenase / GMP reductase domain LDH63_04740 PF00571 CBS domain LDH63_04745 PF02540 NAD synthase LDH63_04745 PF00117 Glutamine amidotransferase class-I LDH63_04745 PF00958 GMP synthase C terminal domain LDH63_04750 PF01797 Transposase IS200 like LDH63_04755 PF05638 Type VI secretion system effector, Hcp LDH63_04785 PF00872 Transposase, Mutator family LDH63_04800 PF08543 Phosphomethylpyrimidine kinase LDH63_04820 PF00781 Diacylglycerol kinase catalytic domain LDH63_04825 PF01136 Peptidase family U32 LDH63_04825 PF16325 Peptidase family U32 C-terminal domain LDH63_04830 PF07411 Domain of unknown function (DUF1508) LDH63_04835 PF00072 Response regulator receiver domain LDH63_04835 PF00486 Transcriptional regulatory protein, C terminal LDH63_04840 PF00672 HAMP domain LDH63_04840 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LDH63_04840 PF00512 His Kinase A (phospho-acceptor) domain LDH63_04845 PF00672 HAMP domain LDH63_04845 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LDH63_04845 PF00512 His Kinase A (phospho-acceptor) domain LDH63_04850 PF07690 Major Facilitator Superfamily LDH63_04855 PF00873 AcrB/AcrD/AcrF family LDH63_04860 PF00873 AcrB/AcrD/AcrF family LDH63_04865 PF13533 Biotin-lipoyl like LDH63_04870 PF00005 ABC transporter LDH63_04870 PF08402 TOBE domain LDH63_04875 PF00155 Aminotransferase class I and II LDH63_04875 PF00392 Bacterial regulatory proteins, gntR family LDH63_04880 PF00202 Aminotransferase class-III LDH63_04890 PF00528 Binding-protein-dependent transport system inner membrane component LDH63_04895 PF00528 Binding-protein-dependent transport system inner membrane component LDH63_04900 PF00012 Hsp70 protein LDH63_04905 PF00571 CBS domain LDH63_04905 PF01769 Divalent cation transporter LDH63_04905 PF03448 MgtE intracellular N domain LDH63_04915 PF02541 Ppx/GppA phosphatase family LDH63_04920 PF13089 Polyphosphate kinase N-terminal domain LDH63_04920 PF17941 Polyphosphate kinase C-terminal domain 1 LDH63_04920 PF13090 Polyphosphate kinase C-terminal domain 2 LDH63_04920 PF02503 Polyphosphate kinase middle domain LDH63_04925 PF00528 Binding-protein-dependent transport system inner membrane component LDH63_04930 PF00528 Binding-protein-dependent transport system inner membrane component LDH63_04935 PF00005 ABC transporter LDH63_04945 PF13302 Acetyltransferase (GNAT) domain LDH63_04950 PF00551 Formyl transferase LDH63_04955 PF02769 AIR synthase related protein, C-terminal domain LDH63_04955 PF00586 AIR synthase related protein, N-terminal domain LDH63_04965 PF01797 Transposase IS200 like LDH63_04970 PF00308 Bacterial dnaA protein LDH63_04975 PF03960 ArsC family LDH63_04980 PF07720 Tetratricopeptide repeat LDH63_04980 PF01435 Peptidase family M48 LDH63_04985 PF01594 AI-2E family transporter LDH63_04995 PF00578 AhpC/TSA family LDH63_05000 PF01842 ACT domain LDH63_05005 PF00701 Dihydrodipicolinate synthetase family LDH63_05010 PF06804 NlpB/DapX lipoprotein LDH63_05015 PF01797 Transposase IS200 like LDH63_05020 PF01259 SAICAR synthetase LDH63_05025 PF04228 Putative neutral zinc metallopeptidase LDH63_05030 PF04284 Protein of unknown function (DUF441) LDH63_05035 PF08351 Domain of unknown function (DUF1726) LDH63_05035 PF13718 GNAT acetyltransferase 2 LDH63_05035 PF05127 Helicase LDH63_05035 PF17176 tRNA-binding domain LDH63_05045 PF13980 Uncharacterised protein family (UPF0370) LDH63_05050 PF02557 D-alanyl-D-alanine carboxypeptidase LDH63_05055 PF01546 Peptidase family M20/M25/M40 LDH63_05055 PF07687 Peptidase dimerisation domain LDH63_05060 PF03960 ArsC family LDH63_05075 PF00528 Binding-protein-dependent transport system inner membrane component LDH63_05080 PF08402 TOBE domain LDH63_05080 PF00005 ABC transporter LDH63_05090 PF00884 Sulfatase LDH63_05095 PF13186 Iron-sulfur cluster-binding domain LDH63_05095 PF04055 Radical SAM superfamily LDH63_05100 PF04307 LexA-binding, inner membrane-associated putative hydrolase LDH63_05110 PF00873 AcrB/AcrD/AcrF family LDH63_05120 PF00072 Response regulator receiver domain LDH63_05120 PF00196 Bacterial regulatory proteins, luxR family LDH63_05125 PF00037 4Fe-4S binding domain LDH63_05125 PF12800 4Fe-4S binding domain LDH63_05125 PF13187 4Fe-4S dicluster domain LDH63_05130 PF03927 NapD protein LDH63_05135 PF01568 Molydopterin dinucleotide binding domain LDH63_05135 PF10518 TAT (twin-arginine translocation) pathway signal sequence LDH63_05135 PF00384 Molybdopterin oxidoreductase LDH63_05135 PF04879 Molybdopterin oxidoreductase Fe4S4 domain LDH63_05140 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) LDH63_05145 PF03264 NapC/NirT cytochrome c family, N-terminal region LDH63_05150 PF00293 NUDIX domain LDH63_05155 PF00390 Malic enzyme, N-terminal domain LDH63_05155 PF03949 Malic enzyme, NAD binding domain LDH63_05155 PF01515 Phosphate acetyl/butaryl transferase LDH63_05160 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 LDH63_05165 PF01218 Coproporphyrinogen III oxidase LDH63_05170 PF00583 Acetyltransferase (GNAT) family LDH63_05180 PF13018 Extended Signal Peptide of Type V secretion system LDH63_05180 PF03212 Pertactin LDH63_05180 PF16168 Adhesin of bacterial autotransporter system, probable stalk LDH63_05180 PF03797 Autotransporter beta-domain LDH63_05185 PF04076 Bacterial OB fold (BOF) protein LDH63_05190 PF06572 Protein of unknown function (DUF1131) LDH63_05195 PF04261 Dyp-type peroxidase family LDH63_05200 PF00701 Dihydrodipicolinate synthetase family LDH63_05205 PF04131 Putative N-acetylmannosamine-6-phosphate epimerase LDH63_05220 PF00480 ROK family LDH63_05225 PF04074 YhcH/YjgK/YiaL LDH63_05230 PF01418 Helix-turn-helix domain, rpiR family LDH63_05230 PF01380 SIS domain LDH63_05235 PF07690 Major Facilitator Superfamily LDH63_05245 PF00528 Binding-protein-dependent transport system inner membrane component LDH63_05250 PF00528 Binding-protein-dependent transport system inner membrane component LDH63_05255 PF00005 ABC transporter LDH63_05260 PF00291 Pyridoxal-phosphate dependent enzyme LDH63_05275 PF00486 Transcriptional regulatory protein, C terminal LDH63_05275 PF00072 Response regulator receiver domain LDH63_05280 PF00672 HAMP domain LDH63_05280 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LDH63_05280 PF00512 His Kinase A (phospho-acceptor) domain LDH63_05290 PF00155 Aminotransferase class I and II LDH63_05305 PF00474 Sodium:solute symporter family LDH63_05310 PF07992 Pyridine nucleotide-disulphide oxidoreductase LDH63_05310 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain LDH63_05315 PF00005 ABC transporter LDH63_05315 PF02687 FtsX-like permease family LDH63_05315 PF12704 MacB-like periplasmic core domain LDH63_05320 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LDH63_05325 PF00072 Response regulator receiver domain LDH63_05325 PF00486 Transcriptional regulatory protein, C terminal LDH63_05330 PF00512 His Kinase A (phospho-acceptor) domain LDH63_05330 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LDH63_05330 PF00672 HAMP domain LDH63_05330 PF16527 Two-component sensor protein CpxA, periplasmic domain LDH63_05340 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 LDH63_05345 PF05524 PEP-utilising enzyme, N-terminal LDH63_05345 PF00391 PEP-utilising enzyme, mobile domain LDH63_05345 PF02896 PEP-utilising enzyme, TIM barrel domain LDH63_05350 PF00381 PTS HPr component phosphorylation site LDH63_05355 PF00291 Pyridoxal-phosphate dependent enzyme LDH63_05365 PF04354 ZipA, C-terminal FtsZ-binding domain LDH63_05370 PF03119 NAD-dependent DNA ligase C4 zinc finger domain LDH63_05370 PF12826 Helix-hairpin-helix motif LDH63_05370 PF01653 NAD-dependent DNA ligase adenylation domain LDH63_05370 PF03120 NAD-dependent DNA ligase OB-fold domain LDH63_05370 PF00533 BRCA1 C Terminus (BRCT) domain LDH63_05375 PF12843 Putative quorum-sensing-regulated virulence factor LDH63_05400 PF01797 Transposase IS200 like LDH63_05405 PF00749 tRNA synthetases class I (E and Q), catalytic domain LDH63_05435 PF07670 Nucleoside recognition LDH63_05435 PF07662 Na+ dependent nucleoside transporter C-terminus LDH63_05435 PF01773 Na+ dependent nucleoside transporter N-terminus LDH63_05440 PF01566 Natural resistance-associated macrophage protein LDH63_05450 PF00248 Aldo/keto reductase family LDH63_05455 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LDH63_05455 PF03466 LysR substrate binding domain LDH63_05465 PF02685 Glucokinase LDH63_05470 PF07350 Protein of unknown function (DUF1479) LDH63_05475 PF00155 Aminotransferase class I and II LDH63_05480 PF01292 Prokaryotic cytochrome b561 LDH63_05490 PF03783 Curli production assembly/transport component CsgG LDH63_05500 PF05643 Putative bacterial lipoprotein (DUF799) LDH63_05510 PF02613 Nitrate reductase delta subunit LDH63_05515 PF04976 DMSO reductase anchor subunit (DmsC) LDH63_05520 PF12800 4Fe-4S binding domain LDH63_05520 PF13247 4Fe-4S dicluster domain LDH63_05525 PF00384 Molybdopterin oxidoreductase LDH63_05525 PF04879 Molybdopterin oxidoreductase Fe4S4 domain LDH63_05525 PF01568 Molydopterin dinucleotide binding domain LDH63_05535 PF05638 Type VI secretion system effector, Hcp LDH63_05545 PF00005 ABC transporter LDH63_05550 PF00528 Binding-protein-dependent transport system inner membrane component LDH63_05560 PF13406 Transglycosylase SLT domain LDH63_05605 PF05947 Type VI secretion system, TssF LDH63_05610 PF00004 ATPase family associated with various cellular activities (AAA) LDH63_05610 PF07724 AAA domain (Cdc48 subfamily) LDH63_05610 PF17871 AAA lid domain LDH63_05610 PF10431 C-terminal, D2-small domain, of ClpB protein LDH63_05615 PF16970 Type-1 fimbrial protein, A LDH63_05620 PF02753 Pili assembly chaperone PapD, C-terminal domain LDH63_05620 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain LDH63_05625 PF13954 PapC N-terminal domain LDH63_05625 PF00577 Outer membrane usher protein LDH63_05625 PF13953 PapC C-terminal domain LDH63_05630 PF00872 Transposase, Mutator family LDH63_05635 PF13953 PapC C-terminal domain LDH63_05635 PF00577 Outer membrane usher protein LDH63_05635 PF13954 PapC N-terminal domain LDH63_05645 PF05591 Type VI secretion system, VipA, VC_A0107 or Hcp2 LDH63_05650 PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath LDH63_05665 PF05936 Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE LDH63_05675 PF00665 Integrase core domain LDH63_05675 PF02796 Helix-turn-helix domain of resolvase LDH63_05680 PF01695 IstB-like ATP binding protein LDH63_05690 PF06761 Intracellular multiplication and human macrophage-killing LDH63_05690 PF14331 ImcF-related N-terminal domain LDH63_05690 PF06744 Type VI secretion protein IcmF C-terminal LDH63_05695 PF04717 Type VI secretion system, phage-baseplate injector LDH63_05710 PF07024 ImpE protein LDH63_05725 PF03831 PhnA domain LDH63_05725 PF08274 PhnA Zinc-Ribbon LDH63_05735 PF04011 LemA family LDH63_05750 PF00005 ABC transporter LDH63_05755 PF03379 CcmB protein LDH63_05760 PF01578 Cytochrome C assembly protein LDH63_05765 PF04995 Heme exporter protein D (CcmD) LDH63_05770 PF03100 CcmE LDH63_05775 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal LDH63_05775 PF01578 Cytochrome C assembly protein LDH63_05780 PF08534 Redoxin LDH63_05785 PF03918 Cytochrome C biogenesis protein LDH63_05790 PF03918 Cytochrome C biogenesis protein LDH63_05795 PF04333 MlaA lipoprotein LDH63_05800 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) LDH63_05805 PF04175 Protein of unknown function (DUF406) LDH63_05810 PF00108 Thiolase, N-terminal domain LDH63_05810 PF02803 Thiolase, C-terminal domain LDH63_05815 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain LDH63_05815 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain LDH63_05815 PF00378 Enoyl-CoA hydratase/isomerase LDH63_05820 PF00300 Histidine phosphatase superfamily (branch 1) LDH63_05830 PF01713 Smr domain LDH63_05835 PF05175 Methyltransferase small domain LDH63_05840 PF01264 Chorismate synthase LDH63_05845 PF03411 Penicillin-insensitive murein endopeptidase LDH63_05850 PF01925 Sulfite exporter TauE/SafE LDH63_05855 PF04315 Elongation factor P hydroxylase LDH63_05860 PF08891 YfcL protein LDH63_05865 PF05430 S-adenosyl-L-methionine-dependent methyltransferase LDH63_05865 PF01266 FAD dependent oxidoreductase LDH63_05870 PF00109 Beta-ketoacyl synthase, N-terminal domain LDH63_05870 PF02801 Beta-ketoacyl synthase, C-terminal domain LDH63_05880 PF01177 Asp/Glu/Hydantoin racemase LDH63_05885 PF00419 Fimbrial protein LDH63_05895 PF00892 EamA-like transporter family LDH63_05905 PF11890 Domain of unknown function (DUF3410) LDH63_05905 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain LDH63_05905 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain LDH63_05910 PF01118 Semialdehyde dehydrogenase, NAD binding domain LDH63_05910 PF02774 Semialdehyde dehydrogenase, dimerisation domain LDH63_05915 PF01416 tRNA pseudouridine synthase LDH63_05920 PF09335 SNARE associated Golgi protein LDH63_05925 PF01039 Carboxyl transferase domain LDH63_05925 PF17848 Acetyl-coA carboxylase zinc finger domain LDH63_05930 PF08245 Mur ligase middle domain LDH63_05930 PF02875 Mur ligase family, glutamate ligase domain LDH63_05935 PF05036 Sporulation related domain LDH63_05940 PF02674 Colicin V production protein LDH63_05945 PF00156 Phosphoribosyl transferase domain LDH63_05950 PF02441 Flavoprotein LDH63_05955 PF00497 Bacterial extracellular solute-binding proteins, family 3 LDH63_05960 PF00528 Binding-protein-dependent transport system inner membrane component LDH63_05965 PF00528 Binding-protein-dependent transport system inner membrane component LDH63_05970 PF00005 ABC transporter LDH63_05975 PF01370 NAD dependent epimerase/dehydratase family LDH63_05975 PF08338 Domain of unknown function (DUF1731) LDH63_05985 PF12850 Calcineurin-like phosphoesterase superfamily domain LDH63_05990 PF00293 NUDIX domain LDH63_05995 PF03611 PTS system sugar-specific permease component LDH63_06005 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 LDH63_06010 PF00356 Bacterial regulatory proteins, lacI family LDH63_06010 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family LDH63_06020 PF07085 DRTGG domain LDH63_06020 PF01515 Phosphate acetyl/butaryl transferase LDH63_06025 PF00871 Acetokinase family LDH63_06030 PF04217 Protein of unknown function, DUF412 LDH63_06035 PF03887 YfbU domain LDH63_06040 PF13419 Haloacid dehalogenase-like hydrolase LDH63_06045 PF02080 TrkA-C domain LDH63_06045 PF03600 Citrate transporter LDH63_06060 PF00155 Aminotransferase class I and II LDH63_06065 PF03466 LysR substrate binding domain LDH63_06065 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LDH63_06070 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 LDH63_06075 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit LDH63_06080 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit LDH63_06080 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit LDH63_06090 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region LDH63_06090 PF10531 SLBB domain LDH63_06090 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit LDH63_06095 PF01568 Molydopterin dinucleotide binding domain LDH63_06095 PF00384 Molybdopterin oxidoreductase LDH63_06095 PF04879 Molybdopterin oxidoreductase Fe4S4 domain LDH63_06095 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region LDH63_06100 PF00146 NADH dehydrogenase LDH63_06105 PF12838 4Fe-4S dicluster domain LDH63_06110 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 LDH63_06115 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L LDH63_06120 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus LDH63_06120 PF00361 Proton-conducting membrane transporter LDH63_06125 PF00361 Proton-conducting membrane transporter LDH63_06130 PF00361 Proton-conducting membrane transporter LDH63_06140 PF04074 YhcH/YjgK/YiaL LDH63_06145 PF01202 Shikimate kinase LDH63_06150 PF00106 short chain dehydrogenase LDH63_06155 PF02638 Glycosyl hydrolase-like 10 LDH63_06160 PF00356 Bacterial regulatory proteins, lacI family LDH63_06165 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain LDH63_06165 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain LDH63_06170 PF07690 Major Facilitator Superfamily LDH63_06175 PF03928 Haem-degrading LDH63_06180 PF00920 Dehydratase family LDH63_06190 PF05957 Bacterial protein of unknown function (DUF883) LDH63_06200 PF00425 chorismate binding enzyme LDH63_06205 PF16582 Middle domain of thiamine pyrophosphate LDH63_06205 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain LDH63_06205 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain LDH63_06210 PF12697 Alpha/beta hydrolase family LDH63_06215 PF00378 Enoyl-CoA hydratase/isomerase LDH63_06220 PF13378 Enolase C-terminal domain-like LDH63_06225 PF00501 AMP-binding enzyme LDH63_06225 PF13193 AMP-binding enzyme C-terminal domain LDH63_06230 PF02885 Glycosyl transferase family, helical bundle domain LDH63_06240 PF07338 Protein of unknown function (DUF1471) LDH63_06245 PF05971 RNA methyltransferase LDH63_06260 PF01695 IstB-like ATP binding protein LDH63_06265 PF00665 Integrase core domain LDH63_06265 PF02796 Helix-turn-helix domain of resolvase LDH63_06270 PF00465 Iron-containing alcohol dehydrogenase LDH63_06270 PF00171 Aldehyde dehydrogenase family LDH63_06275 PF01914 MarC family integral membrane protein LDH63_06280 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle LDH63_06285 PF00528 Binding-protein-dependent transport system inner membrane component LDH63_06290 PF12911 N-terminal TM domain of oligopeptide transport permease C LDH63_06290 PF00528 Binding-protein-dependent transport system inner membrane component LDH63_06295 PF00005 ABC transporter LDH63_06295 PF08352 Oligopeptide/dipeptide transporter, C-terminal region LDH63_06300 PF00005 ABC transporter LDH63_06300 PF08352 Oligopeptide/dipeptide transporter, C-terminal region LDH63_06310 PF04269 Protein of unknown function, DUF440 LDH63_06315 PF13091 PLD-like domain LDH63_06315 PF13396 Phospholipase_D-nuclease N-terminal LDH63_06330 PF13505 Outer membrane protein beta-barrel domain LDH63_06345 PF03795 YCII-related domain LDH63_06350 PF03544 Gram-negative bacterial TonB protein C-terminal LDH63_06355 PF00872 Transposase, Mutator family LDH63_06360 PF12111 Polyribonucleotide phosphorylase C terminal LDH63_06360 PF10150 Ribonuclease E/G family LDH63_06360 PF00575 S1 RNA binding domain LDH63_06365 PF00849 RNA pseudouridylate synthase LDH63_06365 PF01479 S4 domain LDH63_06370 PF02545 Maf-like protein LDH63_06375 PF02620 Large ribosomal RNA subunit accumulation protein YceD LDH63_06380 PF01783 Ribosomal L32p protein family LDH63_06385 PF02504 Fatty acid synthesis protein LDH63_06390 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III LDH63_06390 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal LDH63_06395 PF00698 Acyl transferase domain LDH63_06405 PF00550 Phosphopantetheine attachment site LDH63_06410 PF00109 Beta-ketoacyl synthase, N-terminal domain LDH63_06410 PF02801 Beta-ketoacyl synthase, C-terminal domain LDH63_06420 PF01063 Amino-transferase class IV LDH63_06430 PF02618 YceG-like family LDH63_06435 PF02223 Thymidylate kinase LDH63_06440 PF09115 DNA polymerase III, delta subunit, C terminal LDH63_06445 PF01026 TatD related DNase LDH63_06450 PF00367 phosphotransferase system, EIIB LDH63_06450 PF02378 Phosphotransferase system, EIIC LDH63_06455 PF01797 Transposase IS200 like LDH63_06465 PF08501 Shikimate dehydrogenase substrate binding domain LDH63_06470 PF01230 HIT domain LDH63_06475 PF07233 Protein of unknown function (DUF1425) LDH63_06480 PF13036 Peptidoglycan-synthase activator LpoB LDH63_06480 PF08139 Prokaryotic membrane lipoprotein lipid attachment site LDH63_06485 PF01636 Phosphotransferase enzyme family LDH63_06490 PF00933 Glycosyl hydrolase family 3 N terminal domain LDH63_06495 PF05728 Uncharacterised protein family (UPF0227) LDH63_06500 PF07992 Pyridine nucleotide-disulphide oxidoreductase LDH63_06515 PF00872 Transposase, Mutator family LDH63_06520 PF05433 Glycine zipper 2TM domain LDH63_06525 PF03461 TRCF domain LDH63_06525 PF17757 UvrB interaction domain LDH63_06525 PF00270 DEAD/DEAH box helicase LDH63_06525 PF00271 Helicase conserved C-terminal domain LDH63_06525 PF02559 CarD-like/TRCF domain LDH63_06530 PF12704 MacB-like periplasmic core domain LDH63_06530 PF02687 FtsX-like permease family LDH63_06535 PF00005 ABC transporter LDH63_06540 PF12704 MacB-like periplasmic core domain LDH63_06540 PF02687 FtsX-like permease family LDH63_06550 PF02146 Sir2 family LDH63_06555 PF07687 Peptidase dimerisation domain LDH63_06555 PF01546 Peptidase family M20/M25/M40 LDH63_06560 PF08007 Cupin superfamily protein LDH63_06565 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LDH63_06565 PF08918 PhoQ Sensor LDH63_06570 PF00072 Response regulator receiver domain LDH63_06570 PF00486 Transcriptional regulatory protein, C terminal LDH63_06580 PF08328 Adenylosuccinate lyase C-terminal LDH63_06580 PF00206 Lyase LDH63_06585 PF04356 Protein of unknown function (DUF489) LDH63_06595 PF00293 NUDIX domain LDH63_06600 PF00849 RNA pseudouridylate synthase LDH63_06605 PF00180 Isocitrate/isopropylmalate dehydrogenase LDH63_06610 PF00356 Bacterial regulatory proteins, lacI family LDH63_06610 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family LDH63_06620 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LDH63_06620 PF08447 PAS fold LDH63_06625 PF05368 NmrA-like family LDH63_06630 PF01638 HxlR-like helix-turn-helix LDH63_06640 PF00328 Histidine phosphatase superfamily (branch 2) LDH63_06645 PF14001 YdfZ protein LDH63_06655 PF13404 AsnC-type helix-turn-helix domain LDH63_06655 PF01037 Lrp/AsnC ligand binding domain LDH63_06660 PF10777 Inner membrane protein YlaC LDH63_06665 PF14765 Polyketide synthase dehydratase LDH63_06665 PF00550 Phosphopantetheine attachment site LDH63_06665 PF08659 KR domain LDH63_06665 PF02801 Beta-ketoacyl synthase, C-terminal domain LDH63_06665 PF00698 Acyl transferase domain LDH63_06665 PF16197 Ketoacyl-synthetase C-terminal extension LDH63_06665 PF00107 Zinc-binding dehydrogenase LDH63_06665 PF08240 Alcohol dehydrogenase GroES-like domain LDH63_06665 PF00109 Beta-ketoacyl synthase, N-terminal domain LDH63_06670 PF02929 Beta galactosidase small chain LDH63_06670 PF16353 Domain of unknown function(DUF4981) LDH63_06670 PF02837 Glycosyl hydrolases family 2, sugar binding domain LDH63_06670 PF02836 Glycosyl hydrolases family 2, TIM barrel domain LDH63_06670 PF00703 Glycosyl hydrolases family 2 LDH63_06675 PF00313 'Cold-shock' DNA-binding domain LDH63_06680 PF10781 Dextransucrase DSRB LDH63_06690 PF02308 MgtC family LDH63_06695 PF00689 Cation transporting ATPase, C-terminus LDH63_06695 PF00690 Cation transporter/ATPase, N-terminus LDH63_06705 PF05280 Flagellar transcriptional activator (FlhC) LDH63_06710 PF01618 MotA/TolQ/ExbB proton channel family LDH63_06725 PF01627 Hpt domain LDH63_06725 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LDH63_06725 PF02895 Signal transducing histidine kinase, homodimeric domain LDH63_06725 PF09078 CheY binding LDH63_06725 PF01584 CheW-like domain LDH63_06730 PF01584 CheW-like domain LDH63_06735 PF07690 Major Facilitator Superfamily LDH63_06740 PF01042 Endoribonuclease L-PSP LDH63_06750 PF08348 YheO-like PAS domain LDH63_06750 PF13309 HTH domain LDH63_06755 PF12951 Passenger-associated-transport-repeat LDH63_06770 PF02203 Tar ligand binding domain homologue LDH63_06770 PF00672 HAMP domain LDH63_06770 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LDH63_06775 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LDH63_06775 PF00672 HAMP domain LDH63_06775 PF02203 Tar ligand binding domain homologue LDH63_06780 PF01739 CheR methyltransferase, SAM binding domain LDH63_06780 PF03705 CheR methyltransferase, all-alpha domain LDH63_06785 PF01339 CheB methylesterase LDH63_06785 PF00072 Response regulator receiver domain LDH63_06790 PF00072 Response regulator receiver domain LDH63_06795 PF04344 Chemotaxis phosphatase, CheZ LDH63_06800 PF01510 N-acetylmuramoyl-L-alanine amidase LDH63_06815 PF01168 Alanine racemase, N-terminal domain LDH63_06815 PF00842 Alanine racemase, C-terminal domain LDH63_06845 PF01695 IstB-like ATP binding protein LDH63_06850 PF00665 Integrase core domain LDH63_06850 PF02796 Helix-turn-helix domain of resolvase LDH63_06865 PF07351 Protein of unknown function (DUF1480) LDH63_06880 PF02753 Pili assembly chaperone PapD, C-terminal domain LDH63_06880 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain LDH63_06900 PF02470 MlaD protein LDH63_06905 PF04403 Paraquat-inducible protein A LDH63_06910 PF13185 GAF domain LDH63_06915 PF17516 ProQ C-terminal domain LDH63_06915 PF04352 ProQ/FINO family LDH63_06920 PF03572 Peptidase family S41 LDH63_06920 PF00595 PDZ domain LDH63_06920 PF11818 C-terminal domain of tail specific protease (DUF3340) LDH63_06920 PF17804 Tail specific protease N-terminal domain LDH63_06925 PF01435 Peptidase family M48 LDH63_06930 PF00419 Fimbrial protein LDH63_06935 PF02753 Pili assembly chaperone PapD, C-terminal domain LDH63_06935 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain LDH63_06940 PF13953 PapC C-terminal domain LDH63_06940 PF13954 PapC N-terminal domain LDH63_06940 PF00577 Outer membrane usher protein LDH63_06950 PF02753 Pili assembly chaperone PapD, C-terminal domain LDH63_06950 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain LDH63_06955 PF07690 Major Facilitator Superfamily LDH63_06960 PF14583 Oligogalacturonate lyase LDH63_06965 PF09339 IclR helix-turn-helix domain LDH63_06965 PF01614 Bacterial transcriptional regulator LDH63_06970 PF01510 N-acetylmuramoyl-L-alanine amidase LDH63_06975 PF00375 Sodium:dicarboxylate symporter family LDH63_06980 PF04307 LexA-binding, inner membrane-associated putative hydrolase LDH63_06985 PF06178 Oligogalacturonate-specific porin protein (KdgM) LDH63_06990 PF01547 Bacterial extracellular solute-binding protein LDH63_06995 PF00005 ABC transporter LDH63_06995 PF03459 TOBE domain LDH63_06995 PF17912 MalK OB fold domain LDH63_07000 PF00528 Binding-protein-dependent transport system inner membrane component LDH63_07005 PF00528 Binding-protein-dependent transport system inner membrane component LDH63_07010 PF06917 Periplasmic pectate lyase LDH63_07020 PF04962 KduI/IolB family LDH63_07025 PF07883 Cupin domain LDH63_07030 PF00872 Transposase, Mutator family LDH63_07035 PF13419 Haloacid dehalogenase-like hydrolase LDH63_07040 PF14002 YniB-like protein LDH63_07045 PF03881 Fructosamine kinase LDH63_07055 PF00950 ABC 3 transport family LDH63_07060 PF00950 ABC 3 transport family LDH63_07065 PF00005 ABC transporter LDH63_07070 PF01297 Zinc-uptake complex component A periplasmic LDH63_07075 PF01464 Transglycosylase SLT domain LDH63_07080 PF01914 MarC family integral membrane protein LDH63_07090 PF13619 KTSC domain LDH63_07095 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain LDH63_07095 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) LDH63_07095 PF02824 TGS domain LDH63_07095 PF03129 Anticodon binding domain LDH63_07100 PF05198 Translation initiation factor IF-3, N-terminal domain LDH63_07100 PF00707 Translation initiation factor IF-3, C-terminal domain LDH63_07105 PF01632 Ribosomal protein L35 LDH63_07110 PF00453 Ribosomal protein L20 LDH63_07120 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain LDH63_07120 PF01409 tRNA synthetases class II core domain (F) LDH63_07125 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain LDH63_07125 PF01588 Putative tRNA binding domain LDH63_07125 PF03484 tRNA synthetase B5 domain LDH63_07125 PF03483 B3/4 domain LDH63_07125 PF03147 Ferredoxin-fold anticodon binding domain LDH63_07130 PF00216 Bacterial DNA-binding protein LDH63_07135 PF01797 Transposase IS200 like LDH63_07145 PF01032 FecCD transport family LDH63_07150 PF00255 Glutathione peroxidase LDH63_07155 PF00005 ABC transporter LDH63_07160 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family LDH63_07165 PF00535 Glycosyl transferase family 2 LDH63_07170 PF00551 Formyl transferase LDH63_07170 PF01370 NAD dependent epimerase/dehydratase family LDH63_07170 PF02911 Formyl transferase, C-terminal domain LDH63_07175 PF01522 Polysaccharide deacetylase LDH63_07180 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase LDH63_07185 PF00892 EamA-like transporter family LDH63_07200 PF00877 NlpC/P60 family LDH63_07205 PF10437 Bacterial lipoate protein ligase C-terminus LDH63_07205 PF03099 Biotin/lipoate A/B protein ligase family LDH63_07215 PF00793 DAHP synthetase I family LDH63_07220 PF03618 Kinase/pyrophosphorylase LDH63_07225 PF00391 PEP-utilising enzyme, mobile domain LDH63_07225 PF02896 PEP-utilising enzyme, TIM barrel domain LDH63_07225 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain LDH63_07235 PF01594 AI-2E family transporter LDH63_07240 PF02913 FAD linked oxidases, C-terminal domain LDH63_07240 PF01565 FAD binding domain LDH63_07240 PF13183 4Fe-4S dicluster domain LDH63_07245 PF03061 Thioesterase superfamily LDH63_07250 PF01521 Iron-sulphur cluster biosynthesis LDH63_07255 PF01458 Uncharacterized protein family (UPF0051) LDH63_07260 PF00005 ABC transporter LDH63_07265 PF01458 Uncharacterized protein family (UPF0051) LDH63_07270 PF00266 Aminotransferase class-V LDH63_07275 PF02657 Fe-S metabolism associated domain LDH63_07280 PF17969 L,D-transpeptidase C-terminal domain LDH63_07280 PF01476 LysM domain LDH63_07280 PF03734 L,D-transpeptidase catalytic domain LDH63_07285 PF01695 IstB-like ATP binding protein LDH63_07290 PF02796 Helix-turn-helix domain of resolvase LDH63_07290 PF00665 Integrase core domain LDH63_07300 PF04728 Lipoprotein leucine-zipper LDH63_07305 PF00224 Pyruvate kinase, barrel domain LDH63_07305 PF02887 Pyruvate kinase, alpha/beta domain LDH63_07320 PF01554 MatE LDH63_07325 PF00677 Lumazine binding domain LDH63_07335 PF07690 Major Facilitator Superfamily LDH63_07340 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LDH63_07340 PF03466 LysR substrate binding domain LDH63_07345 PF00356 Bacterial regulatory proteins, lacI family LDH63_07355 PF02777 Iron/manganese superoxide dismutases, C-terminal domain LDH63_07355 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain LDH63_07360 PF00877 NlpC/P60 family LDH63_07365 PF00462 Glutaredoxin LDH63_07375 PF00929 Exonuclease LDH63_07380 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily LDH63_07385 PF18807 Tripartite Tc toxins repeat LDH63_07385 PF14431 YwqJ-like deaminase LDH63_07390 PF00724 NADH:flavin oxidoreductase / NADH oxidase family LDH63_07395 PF16925 Tetracyclin repressor-like, C-terminal domain LDH63_07395 PF00440 Bacterial regulatory proteins, tetR family LDH63_07400 PF08019 Phosphoethanolamine transferase EptA/EptB LDH63_07400 PF00884 Sulfatase LDH63_07405 PF06945 Protein of unknown function (DUF1289) LDH63_07410 PF00248 Aldo/keto reductase family LDH63_07415 PF01047 MarR family LDH63_07420 PF05433 Glycine zipper 2TM domain LDH63_07430 PF09864 Membrane-bound lysozyme-inhibitor of c-type lysozyme LDH63_07435 PF01243 Pyridoxamine 5'-phosphate oxidase LDH63_07435 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region LDH63_07440 PF01479 S4 domain LDH63_07440 PF00579 tRNA synthetases class I (W and Y) LDH63_07445 PF08543 Phosphomethylpyrimidine kinase LDH63_07450 PF00043 Glutathione S-transferase, C-terminal domain LDH63_07450 PF02798 Glutathione S-transferase, N-terminal domain LDH63_07455 PF11656 YjbD family (DUF3811) LDH63_07460 PF04893 Yip1 domain LDH63_07465 PF00854 POT family LDH63_07475 PF00005 ABC transporter LDH63_07480 PF00005 ABC transporter LDH63_07480 PF08352 Oligopeptide/dipeptide transporter, C-terminal region LDH63_07485 PF00528 Binding-protein-dependent transport system inner membrane component LDH63_07485 PF12911 N-terminal TM domain of oligopeptide transport permease C LDH63_07490 PF00528 Binding-protein-dependent transport system inner membrane component LDH63_07495 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle LDH63_07505 PF02954 Bacterial regulatory protein, Fis family LDH63_07505 PF00158 Sigma-54 interaction domain LDH63_07510 PF04012 PspA/IM30 family LDH63_07515 PF06667 Phage shock protein B LDH63_07520 PF04024 PspC domain LDH63_07530 PF04317 YcjX-like family, DUF463 LDH63_07535 PF05128 Domain of unknown function (DUF697) LDH63_07540 PF08808 RES domain LDH63_07545 PF09722 Protein of unknown function (DUF2384) LDH63_07550 PF18024 Helix-turn-helix domain LDH63_07550 PF00158 Sigma-54 interaction domain LDH63_07555 PF01797 Transposase IS200 like LDH63_07560 PF08534 Redoxin LDH63_07565 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain LDH63_07565 PF13378 Enolase C-terminal domain-like LDH63_07570 PF00246 Zinc carboxypeptidase LDH63_07575 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle LDH63_07580 PF01544 CorA-like Mg2+ transporter protein LDH63_07590 PF07859 alpha/beta hydrolase fold LDH63_07595 PF01171 PP-loop family LDH63_07600 PF10371 Domain of unknown function LDH63_07600 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II LDH63_07600 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg LDH63_07600 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain LDH63_07600 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase LDH63_07605 PF00893 Small Multidrug Resistance protein LDH63_07610 PF02308 MgtC family LDH63_07615 PF03891 Domain of unknown function (DUF333) LDH63_07620 PF03724 META domain LDH63_07625 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain LDH63_07625 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain LDH63_07630 PF11739 Dicarboxylate transport LDH63_07635 PF13617 YnbE-like lipoprotein LDH63_07640 PF07027 Protein of unknown function (DUF1318) LDH63_07645 PF01232 Mannitol dehydrogenase Rossmann domain LDH63_07645 PF08125 Mannitol dehydrogenase C-terminal domain LDH63_07650 PF00325 Bacterial regulatory proteins, crp family LDH63_07650 PF04198 Putative sugar-binding domain LDH63_07655 PF02525 Flavodoxin-like fold LDH63_07660 PF00270 DEAD/DEAH box helicase LDH63_07660 PF11898 Domain of unknown function (DUF3418) LDH63_07660 PF04408 Helicase associated domain (HA2) LDH63_07660 PF00271 Helicase conserved C-terminal domain LDH63_07660 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold LDH63_07675 PF00089 Trypsin LDH63_07685 PF01292 Prokaryotic cytochrome b561 LDH63_07690 PF04264 YceI-like domain LDH63_07705 PF18807 Tripartite Tc toxins repeat LDH63_07705 PF14431 YwqJ-like deaminase LDH63_07715 PF02074 Carboxypeptidase Taq (M32) metallopeptidase LDH63_07720 PF00672 HAMP domain LDH63_07720 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LDH63_07720 PF00512 His Kinase A (phospho-acceptor) domain LDH63_07725 PF00486 Transcriptional regulatory protein, C terminal LDH63_07725 PF00072 Response regulator receiver domain LDH63_07735 PF13520 Amino acid permease LDH63_07740 PF07338 Protein of unknown function (DUF1471) LDH63_07750 PF05222 Alanine dehydrogenase/PNT, N-terminal domain LDH63_07750 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch LDH63_07750 PF01262 Alanine dehydrogenase/PNT, C-terminal domain LDH63_07755 PF02233 NAD(P) transhydrogenase beta subunit LDH63_07760 PF00582 Universal stress protein family LDH63_07765 PF13545 Crp-like helix-turn-helix domain LDH63_07765 PF00027 Cyclic nucleotide-binding domain LDH63_07770 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain LDH63_07770 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain LDH63_07775 PF00245 Alkaline phosphatase LDH63_07785 PF13419 Haloacid dehalogenase-like hydrolase LDH63_07790 PF01842 ACT domain LDH63_07795 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain LDH63_07795 PF00205 Thiamine pyrophosphate enzyme, central domain LDH63_07795 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain LDH63_07825 PF10423 Bacterial AMP nucleoside phosphorylase N-terminus LDH63_07825 PF01048 Phosphorylase superfamily LDH63_07830 PF00005 ABC transporter LDH63_07835 PF00528 Binding-protein-dependent transport system inner membrane component LDH63_07840 PF09084 NMT1/THI5 like LDH63_07845 PF13407 Periplasmic binding protein domain LDH63_07855 PF00356 Bacterial regulatory proteins, lacI family LDH63_07860 PF00654 Voltage gated chloride channel LDH63_07870 PF00480 ROK family LDH63_07875 PF03466 LysR substrate binding domain LDH63_07875 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LDH63_07885 PF05472 DNA replication terminus site-binding protein (Ter protein) LDH63_07890 PF10415 Fumarase C C-terminus LDH63_07890 PF00206 Lyase LDH63_07895 PF01238 Phosphomannose isomerase type I LDH63_07900 PF06097 Bacterial protein of unknown function (DUF945) LDH63_07910 PF13593 SBF-like CPA transporter family (DUF4137) LDH63_07915 PF01408 Oxidoreductase family, NAD-binding Rossmann fold LDH63_07915 PF02894 Oxidoreductase family, C-terminal alpha/beta domain LDH63_07920 PF02311 AraC-like ligand binding domain LDH63_07920 PF12833 Helix-turn-helix domain LDH63_07925 PF02653 Branched-chain amino acid transport system / permease component LDH63_07930 PF00005 ABC transporter LDH63_07935 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family LDH63_07940 PF02782 FGGY family of carbohydrate kinases, C-terminal domain LDH63_07945 PF11762 L-arabinose isomerase C-terminal domain LDH63_07945 PF02610 L-arabinose isomerase LDH63_07950 PF00664 ABC transporter transmembrane region LDH63_07950 PF00005 ABC transporter LDH63_07950 PF03412 Peptidase C39 family LDH63_07960 PF13533 Biotin-lipoyl like LDH63_07965 PF00005 ABC transporter LDH63_07965 PF03412 Peptidase C39 family LDH63_07965 PF00664 ABC transporter transmembrane region LDH63_07970 PF00664 ABC transporter transmembrane region LDH63_07970 PF00005 ABC transporter LDH63_07970 PF03412 Peptidase C39 family LDH63_07975 PF10754 Protein of unknown function (DUF2569) LDH63_07980 PF02508 Rnf-Nqr subunit, membrane protein LDH63_07985 PF04060 Putative Fe-S cluster LDH63_07990 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit LDH63_07990 PF13237 4Fe-4S dicluster domain LDH63_07990 PF13375 RnfC Barrel sandwich hybrid domain LDH63_07990 PF10531 SLBB domain LDH63_07995 PF12833 Helix-turn-helix domain LDH63_07995 PF06445 GyrI-like small molecule binding domain LDH63_08000 PF03116 NQR2, RnfD, RnfE family LDH63_08005 PF04205 FMN-binding domain LDH63_08010 PF02508 Rnf-Nqr subunit, membrane protein LDH63_08015 PF00730 HhH-GPD superfamily base excision DNA repair protein LDH63_08015 PF10576 Iron-sulfur binding domain of endonuclease III LDH63_08015 PF00633 Helix-hairpin-helix motif LDH63_08020 PF01370 NAD dependent epimerase/dehydratase family LDH63_08025 PF07690 Major Facilitator Superfamily LDH63_08030 PF17876 Cold shock domain LDH63_08030 PF08206 Ribonuclease B OB domain LDH63_08030 PF00575 S1 RNA binding domain LDH63_08030 PF00773 RNB domain LDH63_08035 PF02554 Carbon starvation protein CstA LDH63_08035 PF13722 5TM C-terminal transporter carbon starvation CstA LDH63_08040 PF04328 Selenoprotein, putative LDH63_08045 PF00923 Transaldolase/Fructose-6-phosphate aldolase LDH63_08055 PF00596 Class II Aldolase and Adducin N-terminal domain LDH63_08060 PF05433 Glycine zipper 2TM domain LDH63_08065 PF01253 Translation initiation factor SUI1 LDH63_08070 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family LDH63_08080 PF18073 Rubredoxin metal binding domain LDH63_08085 PF06305 Lipopolysaccharide assembly protein A domain LDH63_08090 PF01569 PAP2 superfamily LDH63_08095 PF00925 GTP cyclohydrolase II LDH63_08100 PF00330 Aconitase family (aconitate hydratase) LDH63_08100 PF00694 Aconitase C-terminal domain LDH63_08110 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LDH63_08110 PF03466 LysR substrate binding domain LDH63_08115 PF08272 Topoisomerase I zinc-ribbon-like LDH63_08115 PF01131 DNA topoisomerase LDH63_08115 PF01396 Topoisomerase DNA binding C4 zinc finger LDH63_08115 PF01751 Toprim domain LDH63_08125 PF10692 Protein of unknown function (DUF2498) LDH63_08130 PF08496 Peptidase family S49 N-terminal LDH63_08130 PF01343 Peptidase family S49 LDH63_08135 PF00106 short chain dehydrogenase LDH63_08140 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP LDH63_08145 PF01479 S4 domain LDH63_08145 PF00849 RNA pseudouridylate synthase LDH63_08150 PF01300 Telomere recombination LDH63_08155 PF02811 PHP domain LDH63_08165 PF04715 Anthranilate synthase component I, N terminal region LDH63_08165 PF00425 chorismate binding enzyme LDH63_08175 PF00218 Indole-3-glycerol phosphate synthase LDH63_08175 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase LDH63_08180 PF00291 Pyridoxal-phosphate dependent enzyme LDH63_08185 PF00290 Tryptophan synthase alpha chain LDH63_08195 PF03922 OmpW family LDH63_08220 PF04279 Intracellular septation protein A LDH63_08225 PF03061 Thioesterase superfamily LDH63_08230 PF00872 Transposase, Mutator family LDH63_08240 PF03992 Antibiotic biosynthesis monooxygenase LDH63_08245 PF01979 Amidohydrolase family LDH63_08250 PF06183 DinI-like family LDH63_08255 PF13991 BssS protein family LDH63_08260 PF00872 Transposase, Mutator family LDH63_08265 PF01266 FAD dependent oxidoreductase LDH63_08270 PF00196 Bacterial regulatory proteins, luxR family LDH63_08280 PF01594 AI-2E family transporter LDH63_08285 PF00581 Rhodanese-like domain LDH63_08285 PF12368 Rhodanase C-terminal LDH63_08285 PF17773 UPF0176 acylphosphatase like domain LDH63_08300 PF00765 Autoinducer synthase LDH63_08305 PF03472 Autoinducer binding domain LDH63_08305 PF00196 Bacterial regulatory proteins, luxR family LDH63_08310 PF03466 LysR substrate binding domain LDH63_08310 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LDH63_08315 PF00083 Sugar (and other) transporter LDH63_08325 PF00248 Aldo/keto reductase family LDH63_08330 PF09618 CRISPR-associated protein (Cas_Csy4) LDH63_08335 PF09615 CRISPR-associated protein (Cas_Csy3) LDH63_08340 PF09614 CRISPR-associated protein (Cas_Csy2) LDH63_08345 PF09611 CRISPR-associated protein (Cas_Csy1) LDH63_08355 PF01867 CRISPR associated protein Cas1 LDH63_08360 PF00924 Mechanosensitive ion channel LDH63_08380 PF04041 beta-1,4-mannooligosaccharide phosphorylase LDH63_08385 PF00528 Binding-protein-dependent transport system inner membrane component LDH63_08390 PF00528 Binding-protein-dependent transport system inner membrane component LDH63_08400 PF00356 Bacterial regulatory proteins, lacI family LDH63_08405 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II LDH63_08405 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I LDH63_08405 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III LDH63_08405 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain LDH63_08410 PF00005 ABC transporter LDH63_08410 PF17912 MalK OB fold domain LDH63_08420 PF13332 Hemagglutinin repeat LDH63_08420 PF05594 Haemagluttinin repeat LDH63_08420 PF05860 haemagglutination activity domain LDH63_08420 PF15526 Novel toxin 21 LDH63_08420 PF04829 Pre-toxin domain with VENN motif LDH63_08465 PF05860 haemagglutination activity domain LDH63_08465 PF04829 Pre-toxin domain with VENN motif LDH63_08465 PF13018 Extended Signal Peptide of Type V secretion system LDH63_08465 PF13332 Hemagglutinin repeat LDH63_08470 PF08479 POTRA domain, ShlB-type LDH63_08470 PF17287 POTRA domain LDH63_08470 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB LDH63_08475 PF00175 Oxidoreductase NAD-binding domain LDH63_08475 PF00111 2Fe-2S iron-sulfur cluster binding domain LDH63_08475 PF00970 Oxidoreductase FAD-binding domain LDH63_08480 PF00848 Ring hydroxylating alpha subunit (catalytic domain) LDH63_08480 PF00355 Rieske [2Fe-2S] domain LDH63_08485 PF02028 BCCT, betaine/carnitine/choline family transporter LDH63_08495 PF00180 Isocitrate/isopropylmalate dehydrogenase LDH63_08500 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LDH63_08500 PF03466 LysR substrate binding domain LDH63_08505 PF00356 Bacterial regulatory proteins, lacI family LDH63_08510 PF02653 Branched-chain amino acid transport system / permease component LDH63_08515 PF00005 ABC transporter LDH63_08520 PF13407 Periplasmic binding protein domain LDH63_08525 PF08240 Alcohol dehydrogenase GroES-like domain LDH63_08525 PF00107 Zinc-binding dehydrogenase LDH63_08545 PF13505 Outer membrane protein beta-barrel domain LDH63_08550 PF00892 EamA-like transporter family LDH63_08560 PF13649 Methyltransferase domain LDH63_08565 PF00210 Ferritin-like domain LDH63_08575 PF00497 Bacterial extracellular solute-binding proteins, family 3 LDH63_08580 PF00528 Binding-protein-dependent transport system inner membrane component LDH63_08585 PF00005 ABC transporter LDH63_08590 PF13426 PAS domain LDH63_08590 PF08447 PAS fold LDH63_08590 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LDH63_08595 PF02796 Helix-turn-helix domain of resolvase LDH63_08595 PF00665 Integrase core domain LDH63_08600 PF01695 IstB-like ATP binding protein LDH63_08605 PF00265 Thymidine kinase LDH63_08610 PF00816 H-NS histone family LDH63_08615 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain LDH63_08615 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain LDH63_08615 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain LDH63_08620 PF00072 Response regulator receiver domain LDH63_08625 PF02810 SEC-C motif LDH63_08630 PF00551 Formyl transferase LDH63_08630 PF01842 ACT domain LDH63_08635 PF00872 Transposase, Mutator family LDH63_08655 PF03466 LysR substrate binding domain LDH63_08655 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LDH63_08660 PF03372 Endonuclease/Exonuclease/phosphatase family LDH63_08665 PF00293 NUDIX domain LDH63_08670 PF07383 Protein of unknown function (DUF1496) LDH63_08675 PF01131 DNA topoisomerase LDH63_08675 PF01751 Toprim domain LDH63_08680 PF00586 AIR synthase related protein, N-terminal domain LDH63_08680 PF02769 AIR synthase related protein, C-terminal domain LDH63_08685 PF00881 Nitroreductase family LDH63_08690 PF01343 Peptidase family S49 LDH63_08695 PF00710 Asparaginase, N-terminal LDH63_08695 PF17763 Glutaminase/Asparaginase C-terminal domain LDH63_08700 PF00857 Isochorismatase family LDH63_08705 PF07023 Protein of unknown function (DUF1315) LDH63_08710 PF01641 SelR domain LDH63_08715 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain LDH63_08715 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain LDH63_08720 PF01263 Aldose 1-epimerase LDH63_08725 PF06629 MltA-interacting protein MipA LDH63_08730 PF08298 PrkA AAA domain LDH63_08730 PF06798 PrkA serine protein kinase C-terminal domain LDH63_08735 PF04285 Protein of unknown function (DUF444) LDH63_08745 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LDH63_08745 PF03466 LysR substrate binding domain LDH63_08750 PF05726 Pirin C-terminal cupin domain LDH63_08750 PF02678 Pirin LDH63_08760 PF01266 FAD dependent oxidoreductase LDH63_08765 PF04293 SpoVR like protein LDH63_08770 PF00392 Bacterial regulatory proteins, gntR family LDH63_08770 PF07840 FadR C-terminal domain LDH63_08775 PF06450 Bacterial Na+/H+ antiporter B (NhaB) LDH63_08780 PF02600 Disulfide bond formation protein DsbB LDH63_08800 PF00266 Aminotransferase class-V LDH63_08810 PF00872 Transposase, Mutator family LDH63_08815 PF02413 Caudovirales tail fibre assembly protein, lambda gpK LDH63_08970 PF00872 Transposase, Mutator family LDH63_09040 PF06530 Phage antitermination protein Q LDH63_09050 PF05772 NinB protein LDH63_09065 PF01695 IstB-like ATP binding protein LDH63_09070 PF02796 Helix-turn-helix domain of resolvase LDH63_09070 PF00665 Integrase core domain LDH63_09075 PF12167 Arm DNA-binding domain LDH63_09075 PF00589 Phage integrase family LDH63_09080 PF03692 Putative zinc- or iron-chelating domain LDH63_09085 PF01557 Fumarylacetoacetate (FAA) hydrolase family LDH63_09090 PF13406 Transglycosylase SLT domain LDH63_09100 PF05166 YcgL domain LDH63_09105 PF05209 Septum formation inhibitor MinC, N-terminal domain LDH63_09105 PF03775 Septum formation inhibitor MinC, C-terminal domain LDH63_09110 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain LDH63_09115 PF03776 Septum formation topological specificity factor MinE LDH63_09120 PF00570 HRDC domain LDH63_09120 PF01612 3'-5' exonuclease LDH63_09125 PF13193 AMP-binding enzyme C-terminal domain LDH63_09125 PF00501 AMP-binding enzyme LDH63_09135 PF03843 Outer membrane lipoprotein Slp family LDH63_09140 PF00814 Glycoprotease family LDH63_09145 PF04851 Type III restriction enzyme, res subunit LDH63_09145 PF13307 Helicase C-terminal domain LDH63_09150 PF01042 Endoribonuclease L-PSP LDH63_09155 PF00893 Small Multidrug Resistance protein LDH63_09160 PF00893 Small Multidrug Resistance protein LDH63_09165 PF01081 KDPG and KHG aldolase LDH63_09170 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain LDH63_09170 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain LDH63_09175 PF01380 SIS domain LDH63_09175 PF01418 Helix-turn-helix domain, rpiR family LDH63_09180 PF00224 Pyruvate kinase, barrel domain LDH63_09180 PF02887 Pyruvate kinase, alpha/beta domain LDH63_09190 PF03279 Bacterial lipid A biosynthesis acyltransferase LDH63_09195 PF01476 LysM domain LDH63_09195 PF01551 Peptidase family M23 LDH63_09195 PF08525 Opacity-associated protein A N-terminal motif LDH63_09200 PF01297 Zinc-uptake complex component A periplasmic LDH63_09205 PF00005 ABC transporter LDH63_09210 PF00950 ABC 3 transport family LDH63_09215 PF05496 Holliday junction DNA helicase RuvB P-loop domain LDH63_09215 PF17864 RuvB AAA lid domain LDH63_09215 PF05491 RuvB C-terminal winged helix domain LDH63_09220 PF07499 RuvA, C-terminal domain LDH63_09220 PF01330 RuvA N terminal domain LDH63_09235 PF02075 Crossover junction endodeoxyribonuclease RuvC LDH63_09240 PF01709 Transcriptional regulator LDH63_09245 PF00293 NUDIX domain LDH63_09250 PF01336 OB-fold nucleic acid binding domain LDH63_09250 PF02938 GAD domain LDH63_09250 PF00152 tRNA synthetases class II (D, K and N) LDH63_09255 PF01904 Protein of unknown function DUF72 LDH63_09260 PF01124 MAPEG family LDH63_09265 PF13649 Methyltransferase domain LDH63_09270 PF08003 Protein of unknown function (DUF1698) LDH63_09275 PF03932 CutC family LDH63_09280 PF06185 YecM protein LDH63_09285 PF03485 Arginyl tRNA synthetase N terminal domain LDH63_09285 PF00750 tRNA synthetases class I (R) LDH63_09285 PF05746 DALR anticodon binding domain LDH63_09290 PF13332 Hemagglutinin repeat LDH63_09290 PF05860 haemagglutination activity domain LDH63_09295 PF08479 POTRA domain, ShlB-type LDH63_09295 PF17287 POTRA domain LDH63_09295 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB LDH63_09300 PF03023 Lipid II flippase MurJ LDH63_09305 PF04337 Protein of unknown function, DUF480 LDH63_09310 PF13302 Acetyltransferase (GNAT) domain LDH63_09320 PF07273 Protein of unknown function (DUF1439) LDH63_09325 PF02613 Nitrate reductase delta subunit LDH63_09330 PF02811 PHP domain LDH63_09340 PF01325 Iron dependent repressor, N-terminal DNA binding domain LDH63_09340 PF00480 ROK family LDH63_09345 PF03009 Glycerophosphoryl diester phosphodiesterase family LDH63_09360 PF08402 TOBE domain LDH63_09360 PF00005 ABC transporter LDH63_09365 PF00528 Binding-protein-dependent transport system inner membrane component LDH63_09370 PF00528 Binding-protein-dependent transport system inner membrane component LDH63_09380 PF03009 Glycerophosphoryl diester phosphodiesterase family LDH63_09390 PF00916 Sulfate permease family LDH63_09390 PF01740 STAS domain LDH63_09395 PF00793 DAHP synthetase I family LDH63_09400 PF13369 Transglutaminase-like superfamily LDH63_09405 PF04247 Invasion gene expression up-regulator, SirB LDH63_09410 PF13847 Methyltransferase domain LDH63_09410 PF17827 PrmC N-terminal domain LDH63_09415 PF00472 RF-1 domain LDH63_09415 PF03462 PCRF domain LDH63_09420 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain LDH63_09420 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain LDH63_09420 PF01488 Shikimate / quinate 5-dehydrogenase LDH63_09425 PF03550 Outer membrane lipoprotein LolB LDH63_09430 PF08544 GHMP kinases C terminal LDH63_09430 PF00288 GHMP kinases N terminal domain LDH63_09435 PF14572 Phosphoribosyl synthetase-associated domain LDH63_09435 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase LDH63_09440 PF10762 Protein of unknown function (DUF2583) LDH63_09445 PF01195 Peptidyl-tRNA hydrolase LDH63_09450 PF01926 50S ribosome-binding GTPase LDH63_09450 PF06071 Protein of unknown function (DUF933) LDH63_09490 PF02129 X-Pro dipeptidyl-peptidase (S15 family) LDH63_09495 PF00072 Response regulator receiver domain LDH63_09495 PF00486 Transcriptional regulatory protein, C terminal LDH63_09500 PF00672 HAMP domain LDH63_09500 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LDH63_09500 PF00512 His Kinase A (phospho-acceptor) domain LDH63_09545 PF08242 Methyltransferase domain LDH63_09565 PF00872 Transposase, Mutator family LDH63_09610 PF01370 NAD dependent epimerase/dehydratase family LDH63_09615 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III LDH63_09615 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal LDH63_09620 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal LDH63_09620 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III LDH63_09630 PF05962 HutD LDH63_09635 PF01979 Amidohydrolase family LDH63_09640 PF07702 UTRA domain LDH63_09640 PF00392 Bacterial regulatory proteins, gntR family LDH63_09645 PF01979 Amidohydrolase family LDH63_09660 PF01695 IstB-like ATP binding protein LDH63_09665 PF00665 Integrase core domain LDH63_09665 PF02796 Helix-turn-helix domain of resolvase LDH63_09675 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family LDH63_09680 PF04996 Succinylarginine dihydrolase LDH63_09685 PF00171 Aldehyde dehydrogenase family LDH63_09690 PF04958 Arginine N-succinyltransferase beta subunit LDH63_09695 PF00202 Aminotransferase class-III LDH63_09705 PF00155 Aminotransferase class I and II LDH63_09705 PF00392 Bacterial regulatory proteins, gntR family LDH63_09715 PF00672 HAMP domain LDH63_09715 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LDH63_09715 PF07730 Histidine kinase LDH63_09715 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term LDH63_09720 PF01699 Sodium/calcium exchanger protein LDH63_09725 PF02562 PhoH-like protein LDH63_09740 PF13994 PgaD-like protein LDH63_09745 PF00535 Glycosyl transferase family 2 LDH63_09750 PF14883 Hypothetical glycosyl hydrolase family 13 LDH63_09750 PF01522 Polysaccharide deacetylase LDH63_09760 PF00557 Metallopeptidase family M24 LDH63_09765 PF09313 Domain of unknown function (DUF1971) LDH63_09765 PF03848 Tellurite resistance protein TehB LDH63_09775 PF00578 AhpC/TSA family LDH63_09780 PF00005 ABC transporter LDH63_09780 PF12704 MacB-like periplasmic core domain LDH63_09780 PF02687 FtsX-like permease family LDH63_09790 PF00005 ABC transporter LDH63_09790 PF02687 FtsX-like permease family LDH63_09790 PF12704 MacB-like periplasmic core domain LDH63_09800 PF10634 Fe2+ transport protein LDH63_09805 PF03239 Iron permease FTR1 family LDH63_09820 PF04960 Glutaminase LDH63_09830 PF00455 DeoR C terminal sensor domain LDH63_09830 PF08220 DeoR-like helix-turn-helix domain LDH63_09835 PF00324 Amino acid permease LDH63_09840 PF00155 Aminotransferase class I and II LDH63_09845 PF02508 Rnf-Nqr subunit, membrane protein LDH63_09855 PF04909 Amidohydrolase LDH63_09860 PF07690 Major Facilitator Superfamily LDH63_09875 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LDH63_09875 PF03466 LysR substrate binding domain LDH63_09880 PF03328 HpcH/HpaI aldolase/citrate lyase family LDH63_09885 PF01575 MaoC like domain LDH63_09890 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain LDH63_09890 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain LDH63_09895 PF00072 Response regulator receiver domain LDH63_09895 PF00196 Bacterial regulatory proteins, luxR family LDH63_09900 PF00497 Bacterial extracellular solute-binding proteins, family 3 LDH63_09900 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LDH63_09900 PF00512 His Kinase A (phospho-acceptor) domain LDH63_09900 PF01627 Hpt domain LDH63_09900 PF00989 PAS fold LDH63_09900 PF00072 Response regulator receiver domain LDH63_09910 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain LDH63_09910 PF02753 Pili assembly chaperone PapD, C-terminal domain LDH63_09915 PF13954 PapC N-terminal domain LDH63_09915 PF00577 Outer membrane usher protein LDH63_09915 PF13953 PapC C-terminal domain LDH63_09925 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain LDH63_09925 PF02753 Pili assembly chaperone PapD, C-terminal domain LDH63_09935 PF00589 Phage integrase family LDH63_09935 PF13356 Arm DNA-binding domain LDH63_09940 PF00425 chorismate binding enzyme LDH63_09945 PF07690 Major Facilitator Superfamily LDH63_09950 PF00664 ABC transporter transmembrane region LDH63_09950 PF00005 ABC transporter LDH63_09955 PF04954 Siderophore-interacting protein LDH63_09955 PF08021 Siderophore-interacting FAD-binding domain LDH63_09955 PF00005 ABC transporter LDH63_09955 PF00664 ABC transporter transmembrane region LDH63_09965 PF08242 Methyltransferase domain LDH63_09965 PF00550 Phosphopantetheine attachment site LDH63_09965 PF00668 Condensation domain LDH63_09965 PF00501 AMP-binding enzyme LDH63_09970 PF00698 Acyl transferase domain LDH63_09970 PF00668 Condensation domain LDH63_09970 PF16197 Ketoacyl-synthetase C-terminal extension LDH63_09970 PF00109 Beta-ketoacyl synthase, N-terminal domain LDH63_09970 PF02801 Beta-ketoacyl synthase, C-terminal domain LDH63_09970 PF00550 Phosphopantetheine attachment site LDH63_09980 PF00975 Thioesterase domain LDH63_09985 PF00501 AMP-binding enzyme LDH63_09985 PF13193 AMP-binding enzyme C-terminal domain LDH63_09990 PF00593 TonB dependent receptor LDH63_09990 PF07715 TonB-dependent Receptor Plug Domain LDH63_10020 PF01695 IstB-like ATP binding protein LDH63_10025 PF00665 Integrase core domain LDH63_10025 PF02796 Helix-turn-helix domain of resolvase LDH63_10045 PF08402 TOBE domain LDH63_10045 PF00005 ABC transporter LDH63_10050 PF00528 Binding-protein-dependent transport system inner membrane component LDH63_10055 PF00528 Binding-protein-dependent transport system inner membrane component LDH63_10065 PF01408 Oxidoreductase family, NAD-binding Rossmann fold LDH63_10065 PF02894 Oxidoreductase family, C-terminal alpha/beta domain LDH63_10070 PF00392 Bacterial regulatory proteins, gntR family LDH63_10070 PF07702 UTRA domain LDH63_10165 PF14528 LAGLIDADG-like domain LDH63_10165 PF00772 DnaB-like helicase N terminal domain LDH63_10165 PF03796 DnaB-like helicase C terminal domain LDH63_10190 PF01066 CDP-alcohol phosphatidyltransferase LDH63_10195 PF02151 UvrB/uvrC motif LDH63_10195 PF08459 UvrC Helix-hairpin-helix N-terminal LDH63_10195 PF01541 GIY-YIG catalytic domain LDH63_10200 PF00196 Bacterial regulatory proteins, luxR family LDH63_10200 PF00072 Response regulator receiver domain LDH63_10205 PF10769 Protein of unknown function (DUF2594) LDH63_10210 PF06942 GlpM protein LDH63_10220 PF13505 Outer membrane protein beta-barrel domain LDH63_10230 PF00324 Amino acid permease LDH63_10235 PF01344 Kelch motif LDH63_10240 PF03358 NADPH-dependent FMN reductase LDH63_10245 PF04261 Dyp-type peroxidase family LDH63_10250 PF09375 Imelysin LDH63_10250 PF13473 Cupredoxin-like domain LDH63_10255 PF03239 Iron permease FTR1 family LDH63_10260 PF00474 Sodium:solute symporter family LDH63_10270 PF00171 Aldehyde dehydrogenase family LDH63_10270 PF01619 Proline dehydrogenase LDH63_10270 PF14850 DNA-binding domain of Proline dehydrogenase LDH63_10270 PF18327 Proline utilization A proline dehydrogenase N-terminal domain LDH63_10290 PF00005 ABC transporter LDH63_10295 PF00528 Binding-protein-dependent transport system inner membrane component LDH63_10300 PF00497 Bacterial extracellular solute-binding proteins, family 3 LDH63_10305 PF00291 Pyridoxal-phosphate dependent enzyme LDH63_10310 PF02899 Phage integrase, N-terminal SAM-like domain LDH63_10315 PF04542 Sigma-70 region 2 LDH63_10315 PF04539 Sigma-70 region 3 LDH63_10315 PF04545 Sigma-70, region 4 LDH63_10320 PF00700 Bacterial flagellin C-terminal helical region LDH63_10320 PF00669 Bacterial flagellin N-terminal helical region LDH63_10320 PF08884 Flagellin D3 domain LDH63_10325 PF02465 Flagellar hook-associated protein 2 N-terminus LDH63_10325 PF07196 Flagellin hook IN motif LDH63_10325 PF07195 Flagellar hook-associated protein 2 C-terminus LDH63_10330 PF02561 Flagellar protein FliS LDH63_10335 PF05400 Flagellar protein FliT LDH63_10340 PF12833 Helix-turn-helix domain LDH63_10345 PF02743 Cache domain LDH63_10345 PF00211 Adenylate and Guanylate cyclase catalytic domain LDH63_10345 PF00672 HAMP domain LDH63_10350 PF01966 HD domain LDH63_10355 PF00730 HhH-GPD superfamily base excision DNA repair protein LDH63_10375 PF02049 Flagellar hook-basal body complex protein FliE LDH63_10380 PF01514 Secretory protein of YscJ/FliF family LDH63_10380 PF08345 Flagellar M-ring protein C-terminal LDH63_10385 PF14841 FliG middle domain LDH63_10385 PF14842 FliG N-terminal domain LDH63_10385 PF01706 FliG C-terminal domain LDH63_10390 PF02108 Flagellar assembly protein FliH LDH63_10395 PF18269 T3SS EscN ATPase C-terminal domain LDH63_10395 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain LDH63_10400 PF02050 Flagellar FliJ protein LDH63_10405 PF02120 Flagellar hook-length control protein FliK LDH63_10410 PF03748 Flagellar basal body-associated protein FliL LDH63_10415 PF02154 Flagellar motor switch protein FliM LDH63_10415 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term LDH63_10420 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term LDH63_10420 PF16973 Flagellar motor switch protein FliN N-terminal LDH63_10425 PF04347 Flagellar biosynthesis protein, FliO LDH63_10430 PF00813 FliP family LDH63_10435 PF01313 Bacterial export proteins, family 3 LDH63_10440 PF01311 Bacterial export proteins, family 1 LDH63_10455 PF00294 pfkB family carbohydrate kinase LDH63_10460 PF02653 Branched-chain amino acid transport system / permease component LDH63_10465 PF00005 ABC transporter LDH63_10470 PF13407 Periplasmic binding protein domain LDH63_10475 PF02653 Branched-chain amino acid transport system / permease component LDH63_10480 PF00596 Class II Aldolase and Adducin N-terminal domain LDH63_10485 PF04198 Putative sugar-binding domain LDH63_10490 PF00669 Bacterial flagellin N-terminal helical region LDH63_10495 PF00460 Flagella basal body rod protein LDH63_10495 PF06429 Flagellar basal body rod FlgEFG protein C-terminal LDH63_10500 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase LDH63_10500 PF10135 Rod binding protein LDH63_10505 PF02119 Flagellar P-ring protein LDH63_10510 PF02107 Flagellar L-ring protein LDH63_10525 PF00460 Flagella basal body rod protein LDH63_10525 PF06429 Flagellar basal body rod FlgEFG protein C-terminal LDH63_10525 PF07559 Flagellar basal body protein FlaE LDH63_10530 PF13861 FlgD Tudor-like domain LDH63_10530 PF03963 Flagellar hook capping protein - N-terminal region LDH63_10530 PF13860 FlgD Ig-like domain LDH63_10535 PF00460 Flagella basal body rod protein LDH63_10535 PF06429 Flagellar basal body rod FlgEFG protein C-terminal LDH63_10540 PF00460 Flagella basal body rod protein LDH63_10545 PF13144 Chaperone for flagella basal body P-ring formation LDH63_10545 PF17656 FlgA N-terminal domain LDH63_10550 PF04316 Anti-sigma-28 factor, FlgM LDH63_10555 PF05130 FlgN protein LDH63_10575 PF06366 Flagellar protein FlhE LDH63_10580 PF00771 FHIPEP family LDH63_10585 PF01312 FlhB HrpN YscU SpaS Family LDH63_10600 PF10709 Protein of unknown function (DUF2511) LDH63_10610 PF04234 CopC domain LDH63_10615 PF00210 Ferritin-like domain LDH63_10620 PF06440 DNA polymerase III, theta subunit LDH63_10625 PF00561 alpha/beta hydrolase fold LDH63_10630 PF00326 Prolyl oligopeptidase family LDH63_10630 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain LDH63_10635 PF13995 YebF-like protein LDH63_10640 PF04266 ASCH domain LDH63_10645 PF07130 YebG protein LDH63_10650 PF00270 DEAD/DEAH box helicase LDH63_10650 PF00271 Helicase conserved C-terminal domain LDH63_10650 PF03880 DbpA RNA binding domain LDH63_10655 PF02222 ATP-grasp domain LDH63_10660 PF03701 Uncharacterised protein family (UPF0181) LDH63_10665 PF04715 Anthranilate synthase component I, N terminal region LDH63_10665 PF00425 chorismate binding enzyme LDH63_10670 PF00293 NUDIX domain LDH63_10675 PF03313 Serine dehydratase alpha chain LDH63_10675 PF03315 Serine dehydratase beta chain LDH63_10680 PF01613 Flavin reductase like domain LDH63_10685 PF03241 4-hydroxyphenylacetate 3-hydroxylase C terminal LDH63_10685 PF11794 4-hydroxyphenylacetate 3-hydroxylase N terminal LDH63_10690 PF07690 Major Facilitator Superfamily LDH63_10695 PF03328 HpcH/HpaI aldolase/citrate lyase family LDH63_10700 PF01557 Fumarylacetoacetate (FAA) hydrolase family LDH63_10705 PF02962 5-carboxymethyl-2-hydroxymuconate isomerase LDH63_10710 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase LDH63_10715 PF00171 Aldehyde dehydrogenase family LDH63_10720 PF01557 Fumarylacetoacetate (FAA) hydrolase family LDH63_10725 PF01557 Fumarylacetoacetate (FAA) hydrolase family LDH63_10730 PF01047 MarR family LDH63_10740 PF03830 PTS system sorbose subfamily IIB component LDH63_10740 PF03610 PTS system fructose IIA component LDH63_10745 PF03609 PTS system sorbose-specific iic component LDH63_10750 PF03613 PTS system mannose/fructose/sorbose family IID component LDH63_10755 PF06173 Protein of unknown function (DUF986) LDH63_10760 PF02659 Putative manganese efflux pump LDH63_10765 PF07715 TonB-dependent Receptor Plug Domain LDH63_10765 PF00593 TonB dependent receptor LDH63_10770 PF05231 MASE1 LDH63_10770 PF13426 PAS domain LDH63_10770 PF08448 PAS fold LDH63_10770 PF00563 EAL domain LDH63_10770 PF00990 Diguanylate cyclase, GGDEF domain LDH63_10770 PF08447 PAS fold LDH63_10780 PF13847 Methyltransferase domain LDH63_10785 PF02578 Multi-copper polyphenol oxidoreductase laccase LDH63_10790 PF00313 'Cold-shock' DNA-binding domain LDH63_10795 PF10736 Protein of unknown function (DUF2627) LDH63_10800 PF07017 Antimicrobial peptide resistance and lipid A acylation protein PagP LDH63_10805 PF00324 Amino acid permease LDH63_10820 PF13974 YebO-like protein LDH63_10825 PF13998 MgrB protein LDH63_10830 PF13996 YobH-like protein LDH63_10835 PF10964 Protein of unknown function (DUF2766) LDH63_10840 PF12833 Helix-turn-helix domain LDH63_10850 PF00664 ABC transporter transmembrane region LDH63_10850 PF00005 ABC transporter LDH63_10865 PF06167 Glucose-regulated metallo-peptidase M90 LDH63_10875 PF00356 Bacterial regulatory proteins, lacI family LDH63_10875 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family LDH63_10880 PF01695 IstB-like ATP binding protein LDH63_10885 PF00665 Integrase core domain LDH63_10885 PF02796 Helix-turn-helix domain of resolvase LDH63_10890 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family LDH63_10890 PF00356 Bacterial regulatory proteins, lacI family LDH63_10895 PF00872 Transposase, Mutator family LDH63_10900 PF01306 LacY proton/sugar symporter LDH63_10905 PF16874 Glycosyl hydrolase family 36 C-terminal domain LDH63_10905 PF16875 Glycosyl hydrolase family 36 N-terminal domain LDH63_10915 PF01648 4'-phosphopantetheinyl transferase superfamily LDH63_10915 PF17837 4'-phosphopantetheinyl transferase N-terminal domain LDH63_10920 PF03480 Bacterial extracellular solute-binding protein, family 7 LDH63_10930 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component LDH63_10935 PF00196 Bacterial regulatory proteins, luxR family LDH63_10935 PF00072 Response regulator receiver domain LDH63_10945 PF09831 Uncharacterized protein conserved in bacteria (DUF2058) LDH63_10955 PF01522 Polysaccharide deacetylase LDH63_10965 PF01554 MatE LDH63_10970 PF00764 Arginosuccinate synthase LDH63_10975 PF01070 FMN-dependent dehydrogenase LDH63_10980 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain LDH63_10980 PF13378 Enolase C-terminal domain-like LDH63_10985 PF01557 Fumarylacetoacetate (FAA) hydrolase family LDH63_10995 PF04134 Protein of unknown function, DUF393 LDH63_11000 PF07690 Major Facilitator Superfamily LDH63_11005 PF02369 Bacterial Ig-like domain (group 1) LDH63_11005 PF11924 Inverse autotransporter, beta-domain LDH63_11005 PF09134 Invasin, domain 3 LDH63_11010 PF00872 Transposase, Mutator family LDH63_11015 PF04363 Protein of unknown function (DUF496) LDH63_11025 PF08411 Exonuclease C-terminal LDH63_11025 PF00929 Exonuclease LDH63_11035 PF13520 Amino acid permease LDH63_11040 PF00465 Iron-containing alcohol dehydrogenase LDH63_11045 PF00005 ABC transporter LDH63_11050 PF00005 ABC transporter LDH63_11055 PF02653 Branched-chain amino acid transport system / permease component LDH63_11065 PF01370 NAD dependent epimerase/dehydratase family LDH63_11075 PF01634 ATP phosphoribosyltransferase LDH63_11075 PF08029 HisG, C-terminal domain LDH63_11080 PF00815 Histidinol dehydrogenase LDH63_11085 PF00155 Aminotransferase class I and II LDH63_11090 PF00475 Imidazoleglycerol-phosphate dehydratase LDH63_11095 PF00117 Glutamine amidotransferase class-I LDH63_11100 PF00977 Histidine biosynthesis protein LDH63_11105 PF00977 Histidine biosynthesis protein LDH63_11110 PF01502 Phosphoribosyl-AMP cyclohydrolase LDH63_11110 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase LDH63_11115 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain LDH63_11115 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase LDH63_11120 PF00483 Nucleotidyl transferase LDH63_11125 PF00483 Nucleotidyl transferase LDH63_11130 PF04183 IucA / IucC family LDH63_11130 PF06276 Ferric iron reductase FhuF-like transporter LDH63_11135 PF07715 TonB-dependent Receptor Plug Domain LDH63_11135 PF07660 Secretin and TonB N terminus short domain LDH63_11135 PF00593 TonB dependent receptor LDH63_11140 PF01497 Periplasmic binding protein LDH63_11145 PF01032 FecCD transport family LDH63_11150 PF01032 FecCD transport family LDH63_11155 PF00005 ABC transporter LDH63_11160 PF06276 Ferric iron reductase FhuF-like transporter LDH63_11160 PF04183 IucA / IucC family LDH63_11170 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) LDH63_11175 PF00282 Pyridoxal-dependent decarboxylase conserved domain LDH63_11180 PF06276 Ferric iron reductase FhuF-like transporter LDH63_11180 PF11575 FhuF 2Fe-2S C-terminal domain LDH63_11185 PF00571 CBS domain LDH63_11185 PF03741 Integral membrane protein TerC family LDH63_11185 PF03471 Transporter associated domain LDH63_11190 PF05170 AsmA family LDH63_11195 PF00692 dUTPase LDH63_11200 PF00485 Phosphoribulokinase / Uridine kinase family LDH63_11205 PF10609 NUBPL iron-transfer P-loop NTPase LDH63_11210 PF09334 tRNA synthetases class I (M) LDH63_11210 PF01588 Putative tRNA binding domain LDH63_11215 PF01797 Transposase IS200 like LDH63_11235 PF07690 Major Facilitator Superfamily LDH63_11240 PF03788 LrgA family LDH63_11245 PF04172 LrgB-like family LDH63_11250 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region LDH63_11250 PF08211 Cytidine and deoxycytidylate deaminase zinc-binding region LDH63_11255 PF00390 Malic enzyme, N-terminal domain LDH63_11255 PF03949 Malic enzyme, NAD binding domain LDH63_11260 PF02698 DUF218 domain LDH63_11265 PF02653 Branched-chain amino acid transport system / permease component LDH63_11270 PF00005 ABC transporter LDH63_11275 PF13407 Periplasmic binding protein domain LDH63_11280 PF04235 Protein of unknown function (DUF418) LDH63_11285 PF01227 GTP cyclohydrolase I LDH63_11290 PF06779 Uncharacterised MFS-type transporter YbfB LDH63_11295 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LDH63_11295 PF03466 LysR substrate binding domain LDH63_11300 PF08240 Alcohol dehydrogenase GroES-like domain LDH63_11300 PF00107 Zinc-binding dehydrogenase LDH63_11305 PF00756 Putative esterase LDH63_11320 PF13533 Biotin-lipoyl like LDH63_11325 PF00005 ABC transporter LDH63_11335 PF03453 MoeA N-terminal region (domain I and II) LDH63_11335 PF00994 Probable molybdopterin binding domain LDH63_11335 PF03454 MoeA C-terminal region (domain IV) LDH63_11340 PF00899 ThiF family LDH63_11345 PF00872 Transposase, Mutator family LDH63_11355 PF00005 ABC transporter LDH63_11355 PF12848 ABC transporter LDH63_11445 PF10106 Uncharacterized protein conserved in bacteria (DUF2345) LDH63_11445 PF04717 Type VI secretion system, phage-baseplate injector LDH63_11445 PF13296 Putative type VI secretion system Rhs element Vgr LDH63_11450 PF00004 ATPase family associated with various cellular activities (AAA) LDH63_11450 PF07724 AAA domain (Cdc48 subfamily) LDH63_11450 PF17871 AAA lid domain LDH63_11450 PF10431 C-terminal, D2-small domain, of ClpB protein LDH63_11460 PF00691 OmpA family LDH63_11460 PF05736 OprF membrane domain LDH63_11475 PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath LDH63_11485 PF00698 Acyl transferase domain LDH63_11490 PF00550 Phosphopantetheine attachment site LDH63_11505 PF00378 Enoyl-CoA hydratase/isomerase LDH63_11515 PF01154 Hydroxymethylglutaryl-coenzyme A synthase N terminal LDH63_11515 PF08540 Hydroxymethylglutaryl-coenzyme A synthase C terminal LDH63_11525 PF02801 Beta-ketoacyl synthase, C-terminal domain LDH63_11525 PF00109 Beta-ketoacyl synthase, N-terminal domain LDH63_11530 PF07977 FabA-like domain LDH63_11545 PF01565 FAD binding domain LDH63_11545 PF08031 Berberine and berberine like LDH63_11565 PF04358 DsrC like protein LDH63_11570 PF00708 Acylphosphatase LDH63_11575 PF10672 S-adenosylmethionine-dependent methyltransferase LDH63_11575 PF17785 PUA-like domain LDH63_11580 PF08755 Hemimethylated DNA-binding protein YccV like LDH63_11585 PF13380 CoA binding domain LDH63_11590 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) LDH63_11595 PF02142 MGS-like domain LDH63_11600 PF00580 UvrD/REP helicase N-terminal domain LDH63_11600 PF12462 DNA helicase IV / RNA helicase N terminal LDH63_11600 PF13361 UvrD-like helicase C-terminal domain LDH63_11605 PF03733 Inner membrane component domain LDH63_11610 PF12805 FUSC-like inner membrane protein yccS LDH63_11615 PF04993 TfoX N-terminal domain LDH63_11615 PF04994 TfoX C-terminal domain LDH63_11620 PF03846 Cell division inhibitor SulA LDH63_11625 PF00691 OmpA family LDH63_11625 PF01389 OmpA-like transmembrane domain LDH63_11630 PF01797 Transposase IS200 like LDH63_11635 PF17414 MatP C-terminal ribbon-helix-helix domain LDH63_11635 PF06303 MatP N-terminal domain LDH63_11640 PF13654 AAA domain LDH63_11640 PF05362 Lon protease (S16) C-terminal proteolytic domain LDH63_11645 PF07977 FabA-like domain LDH63_11660 PF00665 Integrase core domain LDH63_11660 PF02796 Helix-turn-helix domain of resolvase LDH63_11665 PF01695 IstB-like ATP binding protein LDH63_11675 PF01797 Transposase IS200 like LDH63_11680 PF04957 Ribosome modulation factor LDH63_11685 PF03886 ABC-type transport auxiliary lipoprotein component LDH63_11695 PF02470 MlaD protein LDH63_11700 PF04403 Paraquat-inducible protein A LDH63_11705 PF00005 ABC transporter LDH63_11705 PF16326 ABC transporter C-terminal domain LDH63_11705 PF12848 ABC transporter LDH63_11710 PF10672 S-adenosylmethionine-dependent methyltransferase LDH63_11710 PF02926 THUMP domain LDH63_11710 PF01170 Putative RNA methylase family UPF0020 LDH63_11715 PF00111 2Fe-2S iron-sulfur cluster binding domain LDH63_11715 PF03473 MOSC domain LDH63_11715 PF03476 MOSC N-terminal beta barrel domain LDH63_11720 PF07126 Cell-division protein ZapC LDH63_11725 PF01180 Dihydroorotate dehydrogenase LDH63_11730 PF01433 Peptidase family M1 domain LDH63_11730 PF17432 Domain of unknown function (DUF3458_C) ARM repeats LDH63_11730 PF11940 Domain of unknown function (DUF3458) Ig-like fold LDH63_11735 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family LDH63_11735 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain LDH63_11740 PF00152 tRNA synthetases class II (D, K and N) LDH63_11740 PF01336 OB-fold nucleic acid binding domain LDH63_11745 PF00267 Gram-negative porin LDH63_11750 PF00155 Aminotransferase class I and II LDH63_11760 PF00753 Metallo-beta-lactamase superfamily LDH63_11765 PF05951 Bacterial protein of unknown function (DUF882) LDH63_11770 PF01471 Putative peptidoglycan binding domain LDH63_11770 PF03734 L,D-transpeptidase catalytic domain LDH63_11780 PF04310 MukB N-terminal LDH63_11780 PF16330 MukB hinge domain LDH63_11785 PF04288 MukE-like family LDH63_11790 PF03882 MukF winged-helix domain LDH63_11790 PF17193 MukF C-terminal domain LDH63_11790 PF17192 MukF middle domain LDH63_11795 PF13847 Methyltransferase domain LDH63_11800 PF01636 Phosphotransferase enzyme family LDH63_11805 PF02348 Cytidylyltransferase LDH63_11810 PF03966 Trm112p-like protein LDH63_11815 PF00313 'Cold-shock' DNA-binding domain LDH63_11820 PF07063 Domain of unknown function (DUF1338) LDH63_11825 PF02606 Tetraacyldisaccharide-1-P 4'-kinase LDH63_11830 PF00005 ABC transporter LDH63_11830 PF00664 ABC transporter transmembrane region LDH63_11835 PF03772 Competence protein LDH63_11835 PF00753 Metallo-beta-lactamase superfamily LDH63_11840 PF00216 Bacterial DNA-binding protein LDH63_11845 PF00575 S1 RNA binding domain LDH63_11850 PF02224 Cytidylate kinase LDH63_11855 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) LDH63_11860 PF00266 Aminotransferase class-V LDH63_11870 PF13018 Extended Signal Peptide of Type V secretion system LDH63_11870 PF05658 Head domain of trimeric autotransporter adhesin LDH63_11870 PF05662 Coiled stalk of trimeric autotransporter adhesin LDH63_11870 PF03895 YadA-like membrane anchor domain LDH63_11870 PF05658 Head domain of trimeric autotransporter adhesin LDH63_11870 PF05662 Coiled stalk of trimeric autotransporter adhesin LDH63_11870 PF03895 YadA-like membrane anchor domain LDH63_11870 PF13018 Extended Signal Peptide of Type V secretion system LDH63_11875 PF00710 Asparaginase, N-terminal LDH63_11875 PF17763 Glutaminase/Asparaginase C-terminal domain LDH63_11880 PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding LDH63_11880 PF18381 YcaO cyclodehydratase C-terminal domain LDH63_11885 PF01226 Formate/nitrite transporter LDH63_11890 PF01228 Glycine radical LDH63_11890 PF02901 Pyruvate formate lyase-like LDH63_11900 PF04055 Radical SAM superfamily LDH63_11905 PF07690 Major Facilitator Superfamily LDH63_11910 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) LDH63_11910 PF02403 Seryl-tRNA synthetase N-terminal domain LDH63_11915 PF00004 ATPase family associated with various cellular activities (AAA) LDH63_11915 PF16193 AAA C-terminal domain LDH63_11915 PF12002 MgsA AAA+ ATPase C terminal LDH63_11920 PF03548 Outer membrane lipoprotein carrier protein LolA LDH63_11925 PF17854 FtsK alpha domain LDH63_11925 PF01580 FtsK/SpoIIIE family LDH63_11925 PF13491 4TM region of DNA translocase FtsK/SpoIIIE LDH63_11925 PF09397 Ftsk gamma domain LDH63_11930 PF01037 Lrp/AsnC ligand binding domain LDH63_11935 PF07992 Pyridine nucleotide-disulphide oxidoreductase LDH63_11940 PF00664 ABC transporter transmembrane region LDH63_11940 PF00005 ABC transporter LDH63_11945 PF00664 ABC transporter transmembrane region LDH63_11945 PF00005 ABC transporter LDH63_11950 PF03588 Leucyl/phenylalanyl-tRNA protein transferase LDH63_11955 PF01176 Translation initiation factor 1A / IF-1 LDH63_11965 PF07724 AAA domain (Cdc48 subfamily) LDH63_11965 PF17871 AAA lid domain LDH63_11965 PF02861 Clp amino terminal domain, pathogenicity island component LDH63_11965 PF10431 C-terminal, D2-small domain, of ClpB protein LDH63_11965 PF00004 ATPase family associated with various cellular activities (AAA) LDH63_11970 PF02617 ATP-dependent Clp protease adaptor protein ClpS LDH63_11975 PF00313 'Cold-shock' DNA-binding domain LDH63_11980 PF12704 MacB-like periplasmic core domain LDH63_11980 PF00005 ABC transporter LDH63_11980 PF02687 FtsX-like permease family LDH63_11985 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LDH63_11990 PF04393 Protein of unknown function (DUF535) LDH63_11995 PF11398 Protein of unknown function (DUF2813) LDH63_12000 PF03956 Lysine exporter LysO LDH63_12005 PF03063 Prismane/CO dehydrogenase family LDH63_12010 PF00175 Oxidoreductase NAD-binding domain LDH63_12010 PF00111 2Fe-2S iron-sulfur cluster binding domain LDH63_12010 PF00970 Oxidoreductase FAD-binding domain LDH63_12015 PF00205 Thiamine pyrophosphate enzyme, central domain LDH63_12015 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain LDH63_12015 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain LDH63_12020 PF01212 Beta-eliminating lyase LDH63_12025 PF13460 NAD(P)H-binding LDH63_12025 PF11066 Protein of unknown function (DUF2867) LDH63_12030 PF01370 NAD dependent epimerase/dehydratase family LDH63_12035 PF12883 Protein of unknown function (DUF3828) LDH63_12040 PF01817 Chorismate mutase type II LDH63_12045 PF00005 ABC transporter LDH63_12050 PF00497 Bacterial extracellular solute-binding proteins, family 3 LDH63_12055 PF00528 Binding-protein-dependent transport system inner membrane component LDH63_12060 PF00528 Binding-protein-dependent transport system inner membrane component LDH63_12070 PF00892 EamA-like transporter family LDH63_12075 PF10100 Staphylopine dehydrogenase LDH63_12080 PF03059 Nicotianamine synthase protein LDH63_12085 PF00005 ABC transporter LDH63_12115 PF00497 Bacterial extracellular solute-binding proteins, family 3 LDH63_12120 PF05958 tRNA (Uracil-5-)-methyltransferase LDH63_12125 PF10767 Protein of unknown function (DUF2593) LDH63_12130 PF00528 Binding-protein-dependent transport system inner membrane component LDH63_12135 PF00528 Binding-protein-dependent transport system inner membrane component LDH63_12140 PF08402 TOBE domain LDH63_12140 PF00005 ABC transporter LDH63_12145 PF13416 Bacterial extracellular solute-binding protein LDH63_12150 PF10722 Putative bacterial sensory transduction regulator LDH63_12155 PF07214 Protein of unknown function (DUF1418) LDH63_12160 PF00462 Glutaredoxin LDH63_12165 PF06826 Predicted Permease Membrane Region LDH63_12165 PF02080 TrkA-C domain LDH63_12175 PF01569 PAP2 superfamily LDH63_12180 PF01791 DeoC/LacD family aldolase LDH63_12185 PF00455 DeoR C terminal sensor domain LDH63_12185 PF08220 DeoR-like helix-turn-helix domain LDH63_12195 PF07943 Penicillin-binding protein 5, C-terminal domain LDH63_12195 PF00768 D-alanyl-D-alanine carboxypeptidase LDH63_12200 PF00528 Binding-protein-dependent transport system inner membrane component LDH63_12205 PF00005 ABC transporter LDH63_12205 PF09383 NIL domain LDH63_12210 PF03180 NLPA lipoprotein LDH63_12225 PF00043 Glutathione S-transferase, C-terminal domain LDH63_12225 PF13417 Glutathione S-transferase, N-terminal domain LDH63_12230 PF07715 TonB-dependent Receptor Plug Domain LDH63_12230 PF00593 TonB dependent receptor LDH63_12235 PF00005 ABC transporter LDH63_12240 PF01032 FecCD transport family LDH63_12250 PF00324 Amino acid permease LDH63_12255 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LDH63_12255 PF03466 LysR substrate binding domain LDH63_12260 PF03601 Conserved hypothetical protein 698 LDH63_12265 PF01261 Xylose isomerase-like TIM barrel LDH63_12270 PF13954 PapC N-terminal domain LDH63_12270 PF13953 PapC C-terminal domain LDH63_12270 PF00577 Outer membrane usher protein LDH63_12275 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain LDH63_12275 PF02753 Pili assembly chaperone PapD, C-terminal domain LDH63_12285 PF17550 Family of unknown function LDH63_12290 PF00486 Transcriptional regulatory protein, C terminal LDH63_12295 PF02378 Phosphotransferase system, EIIC LDH63_12295 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit LDH63_12300 PF00294 pfkB family carbohydrate kinase LDH63_12305 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 LDH63_12305 PF00381 PTS HPr component phosphorylation site LDH63_12310 PF00293 NUDIX domain LDH63_12315 PF02653 Branched-chain amino acid transport system / permease component LDH63_12320 PF00005 ABC transporter LDH63_12330 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) LDH63_12335 PF02782 FGGY family of carbohydrate kinases, C-terminal domain LDH63_12335 PF00370 FGGY family of carbohydrate kinases, N-terminal domain LDH63_12340 PF00171 Aldehyde dehydrogenase family LDH63_12350 PF01842 ACT domain LDH63_12350 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain LDH63_12350 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain LDH63_12360 PF03692 Putative zinc- or iron-chelating domain LDH63_12365 PF03222 Tryptophan/tyrosine permease family LDH63_12370 PF01132 Elongation factor P (EF-P) OB domain LDH63_12370 PF08207 Elongation factor P (EF-P) KOW-like domain LDH63_12370 PF09285 Elongation factor P, C-terminal LDH63_12375 PF03786 D-mannonate dehydratase (UxuA) LDH63_12380 PF01232 Mannitol dehydrogenase Rossmann domain LDH63_12380 PF08125 Mannitol dehydrogenase C-terminal domain LDH63_12385 PF07729 FCD domain LDH63_12385 PF00392 Bacterial regulatory proteins, gntR family LDH63_12390 PF02492 CobW/HypB/UreG, nucleotide-binding domain LDH63_12390 PF07683 Cobalamin synthesis protein cobW C-terminal domain LDH63_12395 PF01569 PAP2 superfamily LDH63_12400 PF00877 NlpC/P60 family LDH63_12405 PF12792 CSS motif domain associated with EAL LDH63_12405 PF00563 EAL domain LDH63_12410 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle LDH63_12415 PF00528 Binding-protein-dependent transport system inner membrane component LDH63_12420 PF00528 Binding-protein-dependent transport system inner membrane component LDH63_12420 PF12911 N-terminal TM domain of oligopeptide transport permease C LDH63_12425 PF00005 ABC transporter LDH63_12425 PF08352 Oligopeptide/dipeptide transporter, C-terminal region LDH63_12430 PF13989 YejG-like protein LDH63_12435 PF07690 Major Facilitator Superfamily LDH63_12440 PF00849 RNA pseudouridylate synthase LDH63_12440 PF01479 S4 domain LDH63_12445 PF00271 Helicase conserved C-terminal domain LDH63_12445 PF04851 Type III restriction enzyme, res subunit LDH63_12450 PF01386 Ribosomal L25p family LDH63_12455 PF01797 Transposase IS200 like LDH63_12460 PF04245 37-kD nucleoid-associated bacterial protein LDH63_12465 PF07208 Protein of unknown function (DUF1414) LDH63_12470 PF00884 Sulfatase LDH63_12470 PF11893 Domain of unknown function (DUF3413) LDH63_12485 PF05638 Type VI secretion system effector, Hcp LDH63_12505 PF00232 Glycosyl hydrolase family 1 LDH63_12510 PF01380 SIS domain LDH63_12510 PF01418 Helix-turn-helix domain, rpiR family LDH63_12515 PF07484 Phage Tail Collar Domain LDH63_12525 PF04865 Baseplate J-like protein LDH63_12565 PF04984 Phage tail sheath protein subtilisin-like domain LDH63_12565 PF17482 Phage tail sheath C-terminal domain LDH63_12585 PF01261 Xylose isomerase-like TIM barrel LDH63_12590 PF00455 DeoR C terminal sensor domain LDH63_12590 PF08220 DeoR-like helix-turn-helix domain LDH63_12600 PF07005 Sugar-binding N-terminal domain LDH63_12600 PF17042 Nucleotide-binding C-terminal domain LDH63_12605 PF06530 Phage antitermination protein Q LDH63_12610 PF00717 Peptidase S24-like LDH63_12610 PF01381 Helix-turn-helix LDH63_12615 PF06183 DinI-like family LDH63_12620 PF01278 Omptin family LDH63_12625 PF02743 Cache domain LDH63_12625 PF00672 HAMP domain LDH63_12625 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LDH63_12630 PF12706 Beta-lactamase superfamily domain LDH63_12640 PF00144 Beta-lactamase LDH63_12660 PF00267 Gram-negative porin LDH63_12665 PF07690 Major Facilitator Superfamily LDH63_12670 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LDH63_12670 PF01627 Hpt domain LDH63_12670 PF16359 RcsD-ABL domain LDH63_12675 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LDH63_12675 PF01627 Hpt domain LDH63_12675 PF16359 RcsD-ABL domain LDH63_12680 PF00196 Bacterial regulatory proteins, luxR family LDH63_12680 PF00072 Response regulator receiver domain LDH63_12685 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LDH63_12685 PF00512 His Kinase A (phospho-acceptor) domain LDH63_12685 PF09456 RcsC Alpha-Beta-Loop (ABL) LDH63_12685 PF00072 Response regulator receiver domain LDH63_12690 PF00521 DNA gyrase/topoisomerase IV, subunit A LDH63_12690 PF03989 DNA gyrase C-terminal domain, beta-propeller LDH63_12700 PF00317 Ribonucleotide reductase, all-alpha domain LDH63_12700 PF03477 ATP cone domain LDH63_12700 PF02867 Ribonucleotide reductase, barrel domain LDH63_12705 PF00268 Ribonucleotide reductase, small chain LDH63_12710 PF00111 2Fe-2S iron-sulfur cluster binding domain LDH63_12715 PF03974 Ecotin LDH63_12720 PF00994 Probable molybdopterin binding domain LDH63_12725 PF03222 Tryptophan/tyrosine permease family LDH63_12730 PF07437 YfaZ precursor LDH63_12735 PF00199 Catalase LDH63_12735 PF06628 Catalase-related immune-responsive LDH63_12740 PF06733 DEAD_2 LDH63_12740 PF13307 Helicase C-terminal domain LDH63_12745 PF00267 Gram-negative porin LDH63_12750 PF00892 EamA-like transporter family LDH63_12760 PF01276 Orn/Lys/Arg decarboxylase, major domain LDH63_12760 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain LDH63_12760 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain LDH63_12765 PF13520 Amino acid permease LDH63_12770 PF00528 Binding-protein-dependent transport system inner membrane component LDH63_12775 PF00005 ABC transporter LDH63_12780 PF00528 Binding-protein-dependent transport system inner membrane component LDH63_12790 PF00581 Rhodanese-like domain LDH63_12805 PF00005 ABC transporter LDH63_12810 PF00005 ABC transporter LDH63_12815 PF02653 Branched-chain amino acid transport system / permease component LDH63_12820 PF02653 Branched-chain amino acid transport system / permease component LDH63_12825 PF02954 Bacterial regulatory protein, Fis family LDH63_12825 PF13188 PAS domain LDH63_12825 PF00158 Sigma-54 interaction domain LDH63_12830 PF07308 Protein of unknown function (DUF1456) LDH63_12835 PF00528 Binding-protein-dependent transport system inner membrane component LDH63_12840 PF00528 Binding-protein-dependent transport system inner membrane component LDH63_12850 PF00005 ABC transporter LDH63_12855 PF04226 Transglycosylase associated protein LDH63_12865 PF01844 HNH endonuclease LDH63_12870 PF01928 CYTH domain LDH63_12875 PF01565 FAD binding domain LDH63_12875 PF09330 D-lactate dehydrogenase, membrane binding LDH63_12880 PF00768 D-alanyl-D-alanine carboxypeptidase LDH63_12890 PF01207 Dihydrouridine synthase (Dus) LDH63_12915 PF00872 Transposase, Mutator family LDH63_12950 PF00270 DEAD/DEAH box helicase LDH63_12950 PF00271 Helicase conserved C-terminal domain LDH63_12955 PF09209 Tetracyclin repressor-like, C-terminal domain LDH63_12955 PF00440 Bacterial regulatory proteins, tetR family LDH63_12960 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LDH63_12965 PF00005 ABC transporter LDH63_12990 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LDH63_12990 PF03466 LysR substrate binding domain LDH63_12995 PF00724 NADH:flavin oxidoreductase / NADH oxidase family LDH63_13000 PF02954 Bacterial regulatory protein, Fis family LDH63_13000 PF00072 Response regulator receiver domain LDH63_13000 PF00158 Sigma-54 interaction domain LDH63_13005 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LDH63_13005 PF00512 His Kinase A (phospho-acceptor) domain LDH63_13010 PF13801 Heavy-metal resistance LDH63_13030 PF01048 Phosphorylase superfamily LDH63_13040 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LDH63_13040 PF03466 LysR substrate binding domain LDH63_13045 PF02028 BCCT, betaine/carnitine/choline family transporter LDH63_13050 PF13977 BetI-type transcriptional repressor, C-terminal LDH63_13050 PF00440 Bacterial regulatory proteins, tetR family LDH63_13055 PF00171 Aldehyde dehydrogenase family LDH63_13060 PF05199 GMC oxidoreductase LDH63_13060 PF00732 GMC oxidoreductase LDH63_13065 PF01797 Transposase IS200 like LDH63_13070 PF01027 Inhibitor of apoptosis-promoting Bax1 LDH63_13075 PF02391 MoaE protein LDH63_13080 PF02597 ThiS family LDH63_13085 PF01967 MoaC family LDH63_13090 PF06463 Molybdenum Cofactor Synthesis C LDH63_13090 PF04055 Radical SAM superfamily LDH63_13095 PF01933 Uncharacterised protein family UPF0052 LDH63_13100 PF09905 DNA-binding protein VF530 LDH63_13105 PF02151 UvrB/uvrC motif LDH63_13105 PF04851 Type III restriction enzyme, res subunit LDH63_13105 PF00271 Helicase conserved C-terminal domain LDH63_13105 PF12344 Ultra-violet resistance protein B LDH63_13105 PF17757 UvrB interaction domain LDH63_13110 PF00005 ABC transporter LDH63_13110 PF09383 NIL domain LDH63_13120 PF08241 Methyltransferase domain LDH63_13125 PF00155 Aminotransferase class I and II LDH63_13130 PF06968 Biotin and Thiamin Synthesis associated domain LDH63_13130 PF04055 Radical SAM superfamily LDH63_13135 PF00202 Aminotransferase class-III LDH63_13140 PF10282 Lactonase, 7-bladed beta-propeller LDH63_13150 PF00005 ABC transporter LDH63_13150 PF03459 TOBE domain LDH63_13155 PF00528 Binding-protein-dependent transport system inner membrane component LDH63_13165 PF10766 Multidrug efflux pump-associated protein AcrZ LDH63_13170 PF03459 TOBE domain LDH63_13170 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LDH63_13175 PF00005 ABC transporter LDH63_13185 PF16363 GDP-mannose 4,6 dehydratase LDH63_13190 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain LDH63_13190 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain LDH63_13195 PF08544 GHMP kinases C terminal LDH63_13195 PF00288 GHMP kinases N terminal domain LDH63_13195 PF10509 Galactokinase galactose-binding signature LDH63_13205 PF01263 Aldose 1-epimerase LDH63_13215 PF00300 Histidine phosphatase superfamily (branch 1) LDH63_13220 PF00793 DAHP synthetase I family LDH63_13225 PF01545 Cation efflux family LDH63_13230 PF04973 Nicotinamide mononucleotide transporter LDH63_13235 PF02445 Quinolinate synthetase A protein LDH63_13255 PF13174 Tetratricopeptide repeat LDH63_13255 PF16331 TolA binding protein trimerisation LDH63_13260 PF00691 OmpA family LDH63_13265 PF07676 WD40-like Beta Propeller Repeat LDH63_13265 PF04052 TolB amino-terminal domain LDH63_13270 PF06519 TolA C-terminal LDH63_13270 PF06519 TolA C-terminal LDH63_13275 PF02472 Biopolymer transport protein ExbD/TolR LDH63_13280 PF01618 MotA/TolQ/ExbB proton channel family LDH63_13285 PF03061 Thioesterase superfamily LDH63_13290 PF09600 Cyd operon protein YbgE (Cyd_oper_YbgE) LDH63_13295 PF08173 Membrane bound YbgT-like protein LDH63_13300 PF02322 Cytochrome bd terminal oxidase subunit II LDH63_13305 PF01654 Cytochrome bd terminal oxidase subunit I LDH63_13310 PF02629 CoA binding domain LDH63_13310 PF00549 CoA-ligase LDH63_13315 PF08442 ATP-grasp domain LDH63_13315 PF00549 CoA-ligase LDH63_13320 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) LDH63_13320 PF00364 Biotin-requiring enzyme LDH63_13320 PF02817 e3 binding domain LDH63_13325 PF16078 2-oxoglutarate dehydrogenase N-terminus LDH63_13325 PF00676 Dehydrogenase E1 component LDH63_13325 PF16870 2-oxoglutarate dehydrogenase C-terminal LDH63_13325 PF02779 Transketolase, pyrimidine binding domain LDH63_13330 PF13085 2Fe-2S iron-sulfur cluster binding domain LDH63_13335 PF02910 Fumarate reductase flavoprotein C-term LDH63_13335 PF00890 FAD binding domain LDH63_13340 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit LDH63_13345 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit LDH63_13350 PF00285 Citrate synthase, C-terminal domain LDH63_13355 PF01025 GrpE LDH63_13360 PF01513 ATP-NAD kinase LDH63_13365 PF02463 RecF/RecN/SMC N terminal domain LDH63_13370 PF04355 SmpA / OmlA family LDH63_13375 PF03658 RnfH family Ubiquitin LDH63_13380 PF03364 Polyketide cyclase / dehydrase and lipid transport LDH63_13385 PF01668 SmpB protein LDH63_13400 PF13356 Arm DNA-binding domain LDH63_13400 PF00589 Phage integrase family LDH63_13460 PF05973 Phage derived protein Gp49-like (DUF891) LDH63_13470 PF02796 Helix-turn-helix domain of resolvase LDH63_13470 PF00665 Integrase core domain LDH63_13475 PF01695 IstB-like ATP binding protein LDH63_13485 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin LDH63_13495 PF00929 Exonuclease LDH63_13500 PF00075 RNase H LDH63_13505 PF08241 Methyltransferase domain LDH63_13510 PF16123 Hydroxyacylglutathione hydrolase C-terminus LDH63_13510 PF00753 Metallo-beta-lactamase superfamily LDH63_13515 PF01464 Transglycosylase SLT domain LDH63_13515 PF01476 LysM domain LDH63_13520 PF03372 Endonuclease/Exonuclease/phosphatase family LDH63_13530 PF00248 Aldo/keto reductase family LDH63_13565 PF00005 ABC transporter LDH63_13565 PF09383 NIL domain LDH63_13570 PF00528 Binding-protein-dependent transport system inner membrane component LDH63_13575 PF03180 NLPA lipoprotein LDH63_13580 PF16358 RcsF lipoprotein LDH63_13585 PF18389 TrmO C-terminal domain LDH63_13585 PF01980 tRNA-methyltransferase O LDH63_13590 PF03129 Anticodon binding domain LDH63_13590 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) LDH63_13590 PF04073 Aminoacyl-tRNA editing domain LDH63_13595 PF04170 NlpE N-terminal domain LDH63_13595 PF17185 NlpE C-terminal OB domain LDH63_13600 PF00472 RF-1 domain LDH63_13605 PF07152 YaeQ protein LDH63_13610 PF06786 Uncharacterised protein family (UPF0253) LDH63_13615 PF07073 Modulator of Rho-dependent transcription termination (ROF) LDH63_13620 PF00034 Cytochrome c LDH63_13625 PF11734 TilS substrate C-terminal domain LDH63_13625 PF01171 PP-loop family LDH63_13625 PF09179 TilS substrate binding domain LDH63_13630 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily LDH63_13635 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit LDH63_13640 PF14579 Helix-hairpin-helix motif LDH63_13640 PF07733 Bacterial DNA polymerase III alpha NTPase domain LDH63_13640 PF17657 Bacterial DNA polymerase III alpha subunit finger domain LDH63_13640 PF02811 PHP domain LDH63_13640 PF01336 OB-fold nucleic acid binding domain LDH63_13645 PF01351 Ribonuclease HII LDH63_13650 PF02684 Lipid-A-disaccharide synthetase LDH63_13655 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 LDH63_13655 PF00132 Bacterial transferase hexapeptide (six repeats) LDH63_13660 PF07977 FabA-like domain LDH63_13665 PF00132 Bacterial transferase hexapeptide (six repeats) LDH63_13665 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD LDH63_13670 PF03938 Outer membrane protein (OmpH-like) LDH63_13675 PF01103 Surface antigen LDH63_13675 PF07244 Surface antigen variable number repeat LDH63_13680 PF02163 Peptidase family M50 LDH63_13680 PF17820 PDZ domain LDH63_13690 PF01255 Putative undecaprenyl diphosphate synthase LDH63_13695 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain LDH63_13695 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase LDH63_13695 PF13288 DXP reductoisomerase C-terminal domain LDH63_13700 PF01765 Ribosome recycling factor LDH63_13705 PF00696 Amino acid kinase family LDH63_13710 PF00889 Elongation factor TS LDH63_13715 PF00318 Ribosomal protein S2 LDH63_13720 PF00557 Metallopeptidase family M24 LDH63_13725 PF01909 Nucleotidyltransferase domain LDH63_13725 PF01966 HD domain LDH63_13725 PF08335 GlnD PII-uridylyltransferase LDH63_13725 PF01842 ACT domain LDH63_13730 PF00132 Bacterial transferase hexapeptide (six repeats) LDH63_13730 PF14602 Hexapeptide repeat of succinyl-transferase LDH63_13730 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal LDH63_13735 PF11944 Protein of unknown function (DUF3461) LDH63_13740 PF00258 Flavodoxin LDH63_13745 PF00849 RNA pseudouridylate synthase LDH63_13750 PF04287 tRNA pseudouridine synthase C LDH63_13755 PF01797 Transposase IS200 like LDH63_13760 PF07348 Syd protein (SUKH-2) LDH63_13765 PF14489 QueF-like protein LDH63_13765 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term LDH63_13770 PF11892 Domain of unknown function (DUF3412) LDH63_13770 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases LDH63_13770 PF03641 Possible lysine decarboxylase LDH63_13775 PF01367 5'-3' exonuclease, C-terminal SAM fold LDH63_13775 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain LDH63_13780 PF01728 FtsJ-like methyltransferase LDH63_13780 PF18125 RlmM ferredoxin-like domain LDH63_13785 PF04241 Protein of unknown function (DUF423) LDH63_13790 PF03466 LysR substrate binding domain LDH63_13790 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LDH63_13800 PF00266 Aminotransferase class-V LDH63_13805 PF02657 Fe-S metabolism associated domain LDH63_13810 PF00899 ThiF family LDH63_13815 PF06725 3D domain LDH63_13815 PF03562 MltA specific insert domain LDH63_13830 PF11741 AMIN domain LDH63_13830 PF01520 N-acetylmuramoyl-L-alanine amidase LDH63_13835 PF00696 Amino acid kinase family LDH63_13835 PF00583 Acetyltransferase (GNAT) family LDH63_13840 PF13538 UvrD-like helicase C-terminal domain LDH63_13845 PF12705 PD-(D/E)XK nuclease superfamily LDH63_13845 PF00580 UvrD/REP helicase N-terminal domain LDH63_13845 PF13361 UvrD-like helicase C-terminal domain LDH63_13850 PF00675 Insulinase (Peptidase family M16) LDH63_13850 PF16187 Middle or third domain of peptidase_M16 LDH63_13850 PF05193 Peptidase M16 inactive domain LDH63_13855 PF17946 RecC C-terminal domain LDH63_13880 PF00303 Thymidylate synthase LDH63_13885 PF01790 Prolipoprotein diacylglyceryl transferase LDH63_13890 PF00391 PEP-utilising enzyme, mobile domain LDH63_13890 PF02896 PEP-utilising enzyme, TIM barrel domain LDH63_13890 PF05524 PEP-utilising enzyme, N-terminal LDH63_13890 PF01590 GAF domain LDH63_13895 PF00293 NUDIX domain LDH63_13900 PF02976 DNA mismatch repair enzyme MutH LDH63_13905 PF00248 Aldo/keto reductase family LDH63_13920 PF07690 Major Facilitator Superfamily LDH63_13925 PF01553 Acyltransferase LDH63_13925 PF00501 AMP-binding enzyme LDH63_13925 PF13193 AMP-binding enzyme C-terminal domain LDH63_13930 PF00384 Molybdopterin oxidoreductase LDH63_13930 PF01568 Molydopterin dinucleotide binding domain LDH63_13935 PF00356 Bacterial regulatory proteins, lacI family LDH63_13940 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain LDH63_13940 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain LDH63_13945 PF03466 LysR substrate binding domain LDH63_13945 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LDH63_13950 PF07690 Major Facilitator Superfamily LDH63_13955 PF03466 LysR substrate binding domain LDH63_13955 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LDH63_13970 PF02203 Tar ligand binding domain homologue LDH63_13970 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LDH63_13970 PF00672 HAMP domain LDH63_13985 PF00872 Transposase, Mutator family LDH63_14000 PF01478 Type IV leader peptidase family LDH63_14000 PF06750 Bacterial Peptidase A24 N-terminal domain LDH63_14020 PF07963 Prokaryotic N-terminal methylation motif LDH63_14020 PF11612 Type II secretion system (T2SS), protein J LDH63_14025 PF02501 Type II secretion system (T2SS), protein I LDH63_14025 PF07963 Prokaryotic N-terminal methylation motif LDH63_14040 PF08334 Type II secretion system (T2SS), protein G LDH63_14040 PF07963 Prokaryotic N-terminal methylation motif LDH63_14045 PF00482 Type II secretion system (T2SS), protein F LDH63_14050 PF00437 Type II/IV secretion system protein LDH63_14055 PF00263 Bacterial type II and III secretion system protein LDH63_14055 PF03958 Bacterial type II/III secretion system short domain LDH63_14070 PF00484 Carbonic anhydrase LDH63_14090 PF02278 Polysaccharide lyase family 8, super-sandwich domain LDH63_14090 PF02884 Polysaccharide lyase family 8, C-terminal beta-sandwich domain LDH63_14090 PF09093 Lyase, catalytic LDH63_14090 PF09092 Lyase, N terminal LDH63_14095 PF01695 IstB-like ATP binding protein LDH63_14100 PF00665 Integrase core domain LDH63_14100 PF02796 Helix-turn-helix domain of resolvase LDH63_14105 PF01797 Transposase IS200 like LDH63_14115 PF00884 Sulfatase LDH63_14120 PF08220 DeoR-like helix-turn-helix domain LDH63_14120 PF00455 DeoR C terminal sensor domain LDH63_14125 PF08013 Tagatose 6 phosphate kinase LDH63_14130 PF01380 SIS domain LDH63_14135 PF03830 PTS system sorbose subfamily IIB component LDH63_14140 PF03609 PTS system sorbose-specific iic component LDH63_14145 PF03613 PTS system mannose/fructose/sorbose family IID component LDH63_14150 PF03610 PTS system fructose IIA component LDH63_14155 PF01979 Amidohydrolase family LDH63_14165 PF07470 Glycosyl Hydrolase Family 88 LDH63_14170 PF13186 Iron-sulfur cluster-binding domain LDH63_14170 PF04055 Radical SAM superfamily LDH63_14175 PF00884 Sulfatase LDH63_14185 PF01116 Fructose-bisphosphate aldolase class-II LDH63_14195 PF00356 Bacterial regulatory proteins, lacI family LDH63_14200 PF07690 Major Facilitator Superfamily LDH63_14205 PF17137 Domain of unknown function (DUF5110) LDH63_14205 PF13802 Galactose mutarotase-like LDH63_14205 PF01055 Glycosyl hydrolases family 31 LDH63_14205 PF16338 Domain of unknown function (DUF4968) LDH63_14210 PF00356 Bacterial regulatory proteins, lacI family LDH63_14215 PF02264 LamB porin LDH63_14220 PF00367 phosphotransferase system, EIIB LDH63_14220 PF02378 Phosphotransferase system, EIIC LDH63_14225 PF08532 Beta-galactosidase trimerisation domain LDH63_14225 PF02449 Beta-galactosidase LDH63_14225 PF08533 Beta-galactosidase C-terminal domain LDH63_14230 PF07745 Glycosyl hydrolase family 53 LDH63_14235 PF00528 Binding-protein-dependent transport system inner membrane component LDH63_14240 PF00528 Binding-protein-dependent transport system inner membrane component LDH63_14245 PF13416 Bacterial extracellular solute-binding protein LDH63_14250 PF17912 MalK OB fold domain LDH63_14250 PF00005 ABC transporter LDH63_14255 PF00005 ABC transporter LDH63_14260 PF02653 Branched-chain amino acid transport system / permease component LDH63_14265 PF13407 Periplasmic binding protein domain LDH63_14275 PF05708 Permuted papain-like amidase enzyme, YaeF/YiiX, C92 family LDH63_14285 PF03551 Transcriptional regulator PadR-like family LDH63_14375 PF15731 Antitoxin component of bacterial toxin-antitoxin system, MqsA LDH63_14380 PF15723 Motility quorum-sensing regulator, toxin of MqsA LDH63_14400 PF14659 Phage integrase, N-terminal SAM-like domain LDH63_14400 PF00589 Phage integrase family LDH63_14400 PF13356 Arm DNA-binding domain LDH63_14410 PF00152 tRNA synthetases class II (D, K and N) LDH63_14410 PF01336 OB-fold nucleic acid binding domain LDH63_14420 PF17768 RecJ OB domain LDH63_14420 PF02272 DHHA1 domain LDH63_14420 PF01368 DHH family LDH63_14425 PF13098 Thioredoxin-like domain LDH63_14425 PF10411 Disulfide bond isomerase protein N-terminus LDH63_14430 PF02899 Phage integrase, N-terminal SAM-like domain LDH63_14430 PF00589 Phage integrase family LDH63_14435 PF00258 Flavodoxin LDH63_14440 PF06123 Inner membrane protein CreD LDH63_14445 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LDH63_14445 PF00512 His Kinase A (phospho-acceptor) domain LDH63_14445 PF00672 HAMP domain LDH63_14450 PF00486 Transcriptional regulatory protein, C terminal LDH63_14450 PF00072 Response regulator receiver domain LDH63_14455 PF07254 Membrane-bound toxin component of toxin-antitoxin system LDH63_14460 PF03937 Flavinator of succinate dehydrogenase LDH63_14465 PF01571 Aminomethyltransferase folate-binding domain LDH63_14475 PF03006 Haemolysin-III related LDH63_14505 PF02347 Glycine cleavage system P-protein LDH63_14510 PF01597 Glycine cleavage H-protein LDH63_14515 PF01571 Aminomethyltransferase folate-binding domain LDH63_14515 PF08669 Glycine cleavage T-protein C-terminal barrel domain LDH63_14520 PF01494 FAD binding domain LDH63_14525 PF01494 FAD binding domain LDH63_14530 PF00557 Metallopeptidase family M24 LDH63_14530 PF05195 Aminopeptidase P, N-terminal domain LDH63_14535 PF03695 Uncharacterised protein family (UPF0149) LDH63_14540 PF05164 Cell division protein ZapA LDH63_14550 PF01812 5-formyltetrahydrofolate cyclo-ligase family LDH63_14560 PF01842 ACT domain LDH63_14560 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain LDH63_14560 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain LDH63_14565 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) LDH63_14570 PF03466 LysR substrate binding domain LDH63_14570 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LDH63_14575 PF04402 Protein of unknown function (DUF541) LDH63_14580 PF01810 LysE type translocator LDH63_14585 PF05552 Conserved TM helix LDH63_14585 PF00924 Mechanosensitive ion channel LDH63_14595 PF01116 Fructose-bisphosphate aldolase class-II LDH63_14600 PF00162 Phosphoglycerate kinase LDH63_14605 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain LDH63_14605 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain LDH63_14615 PF00456 Transketolase, thiamine diphosphate binding domain LDH63_14615 PF02780 Transketolase, C-terminal domain LDH63_14615 PF02779 Transketolase, pyrimidine binding domain LDH63_14620 PF01435 Peptidase family M48 LDH63_14625 PF00355 Rieske [2Fe-2S] domain LDH63_14630 PF17944 Arginine decarboxylase C-terminal helical extension LDH63_14630 PF17810 Arginine decarboxylase helical bundle domain LDH63_14630 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain LDH63_14635 PF02773 S-adenosylmethionine synthetase, C-terminal domain LDH63_14635 PF02772 S-adenosylmethionine synthetase, central domain LDH63_14635 PF00438 S-adenosylmethionine synthetase, N-terminal domain LDH63_14640 PF17283 SprT-like zinc ribbon domain LDH63_14640 PF10263 SprT-like family LDH63_14645 PF04231 Endonuclease I LDH63_14650 PF04452 RNA methyltransferase LDH63_14655 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain LDH63_14655 PF02951 Prokaryotic glutathione synthetase, N-terminal domain LDH63_14660 PF02622 Uncharacterized ACR, COG1678 LDH63_14665 PF03652 Holliday junction resolvase LDH63_14670 PF00795 Carbon-nitrogen hydrolase LDH63_14675 PF04371 Porphyromonas-type peptidyl-arginine deiminase LDH63_14680 PF00437 Type II/IV secretion system protein LDH63_14685 PF01168 Alanine racemase, N-terminal domain LDH63_14690 PF03807 NADP oxidoreductase coenzyme F420-dependent LDH63_14690 PF14748 Pyrroline-5-carboxylate reductase dimerisation LDH63_14695 PF02325 YGGT family LDH63_14700 PF02594 Uncharacterised ACR, YggU family COG1872 LDH63_14705 PF01725 Ham1 family LDH63_14710 PF06969 HemN C-terminal domain LDH63_14710 PF04055 Radical SAM superfamily LDH63_14715 PF07634 RtxA repeat LDH63_14715 PF12146 Serine aminopeptidase, S33 LDH63_14715 PF16671 Actin cross-linking domain LDH63_14715 PF11713 Peptidase C80 family LDH63_14715 PF11647 Membrane Localization Domain LDH63_14725 PF04960 Glutaminase LDH63_14730 PF04320 Protein with unknown function (DUF469) LDH63_14735 PF02390 Putative methyltransferase LDH63_14740 PF14815 NUDIX domain LDH63_14740 PF00730 HhH-GPD superfamily base excision DNA repair protein LDH63_14740 PF00633 Helix-hairpin-helix motif LDH63_14740 PF10576 Iron-sulfur binding domain of endonuclease III LDH63_14745 PF04362 Bacterial Fe(2+) trafficking LDH63_14750 PF01464 Transglycosylase SLT domain LDH63_14750 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain LDH63_14760 PF07715 TonB-dependent Receptor Plug Domain LDH63_14765 PF02653 Branched-chain amino acid transport system / permease component LDH63_14770 PF00005 ABC transporter LDH63_14775 PF13407 Periplasmic binding protein domain LDH63_14780 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain LDH63_14780 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain LDH63_14780 PF01276 Orn/Lys/Arg decarboxylase, major domain LDH63_14840 PF10106 Uncharacterized protein conserved in bacteria (DUF2345) LDH63_14840 PF04717 Type VI secretion system, phage-baseplate injector LDH63_14840 PF13296 Putative type VI secretion system Rhs element Vgr LDH63_14845 PF10431 C-terminal, D2-small domain, of ClpB protein LDH63_14845 PF00004 ATPase family associated with various cellular activities (AAA) LDH63_14845 PF07724 AAA domain (Cdc48 subfamily) LDH63_14845 PF17871 AAA lid domain LDH63_14870 PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath LDH63_14895 PF02517 CPBP intramembrane metalloprotease LDH63_14900 PF00765 Autoinducer synthase LDH63_14905 PF00196 Bacterial regulatory proteins, luxR family LDH63_14905 PF03472 Autoinducer binding domain LDH63_14940 PF04183 IucA / IucC family LDH63_14940 PF06276 Ferric iron reductase FhuF-like transporter LDH63_14945 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) LDH63_14950 PF00593 TonB dependent receptor LDH63_14950 PF07715 TonB-dependent Receptor Plug Domain LDH63_14970 PF00356 Bacterial regulatory proteins, lacI family LDH63_14975 PF00939 Sodium:sulfate symporter transmembrane region LDH63_14990 PF03527 RHS protein LDH63_14990 PF05593 RHS Repeat LDH63_15000 PF04717 Type VI secretion system, phage-baseplate injector LDH63_15005 PF12951 Passenger-associated-transport-repeat LDH63_15015 PF02447 GntP family permease LDH63_15030 PF00005 ABC transporter LDH63_15030 PF00664 ABC transporter transmembrane region LDH63_15035 PF00005 ABC transporter LDH63_15035 PF08021 Siderophore-interacting FAD-binding domain LDH63_15035 PF04954 Siderophore-interacting protein LDH63_15035 PF00664 ABC transporter transmembrane region LDH63_15045 PF00975 Thioesterase domain LDH63_15060 PF00668 Condensation domain LDH63_15060 PF08242 Methyltransferase domain LDH63_15060 PF00550 Phosphopantetheine attachment site LDH63_15060 PF00501 AMP-binding enzyme LDH63_15065 PF00501 AMP-binding enzyme LDH63_15065 PF00668 Condensation domain LDH63_15065 PF13193 AMP-binding enzyme C-terminal domain LDH63_15070 PF00550 Phosphopantetheine attachment site LDH63_15070 PF08242 Methyltransferase domain LDH63_15070 PF00668 Condensation domain LDH63_15070 PF00501 AMP-binding enzyme LDH63_15075 PF01695 IstB-like ATP binding protein LDH63_15080 PF00665 Integrase core domain LDH63_15080 PF02796 Helix-turn-helix domain of resolvase LDH63_15085 PF13193 AMP-binding enzyme C-terminal domain LDH63_15085 PF00202 Aminotransferase class-III LDH63_15085 PF00501 AMP-binding enzyme LDH63_15085 PF00668 Condensation domain LDH63_15085 PF16197 Ketoacyl-synthetase C-terminal extension LDH63_15085 PF00109 Beta-ketoacyl synthase, N-terminal domain LDH63_15085 PF02801 Beta-ketoacyl synthase, C-terminal domain LDH63_15085 PF00550 Phosphopantetheine attachment site LDH63_15090 PF00593 TonB dependent receptor LDH63_15090 PF07715 TonB-dependent Receptor Plug Domain LDH63_15095 PF07687 Peptidase dimerisation domain LDH63_15095 PF01546 Peptidase family M20/M25/M40 LDH63_15100 PF03806 AbgT putative transporter family LDH63_15105 PF14496 C-terminal novel E3 ligase, LRR-interacting LDH63_15105 PF12468 Type III secretion system leucine rich repeat protein LDH63_15110 PF12468 Type III secretion system leucine rich repeat protein LDH63_15110 PF14496 C-terminal novel E3 ligase, LRR-interacting LDH63_15110 PF14496 C-terminal novel E3 ligase, LRR-interacting LDH63_15110 PF12468 Type III secretion system leucine rich repeat protein LDH63_15120 PF14496 C-terminal novel E3 ligase, LRR-interacting LDH63_15120 PF12468 Type III secretion system leucine rich repeat protein LDH63_15125 PF03797 Autotransporter beta-domain LDH63_15135 PF07906 ShET2 enterotoxin, N-terminal region LDH63_15140 PF00873 AcrB/AcrD/AcrF family LDH63_15145 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LDH63_15145 PF00529 HlyD membrane-fusion protein of T1SS LDH63_15155 PF08447 PAS fold LDH63_15155 PF00563 EAL domain LDH63_15155 PF00990 Diguanylate cyclase, GGDEF domain LDH63_15155 PF08448 PAS fold LDH63_15190 PF13677 Membrane MotB of proton-channel complex MotA/MotB LDH63_15190 PF00691 OmpA family LDH63_15195 PF01618 MotA/TolQ/ExbB proton channel family LDH63_15200 PF04542 Sigma-70 region 2 LDH63_15200 PF04545 Sigma-70, region 4 LDH63_15225 PF02465 Flagellar hook-associated protein 2 N-terminus LDH63_15225 PF07195 Flagellar hook-associated protein 2 C-terminus LDH63_15225 PF07196 Flagellin hook IN motif LDH63_15230 PF00700 Bacterial flagellin C-terminal helical region LDH63_15230 PF00669 Bacterial flagellin N-terminal helical region LDH63_15235 PF00700 Bacterial flagellin C-terminal helical region LDH63_15235 PF00669 Bacterial flagellin N-terminal helical region LDH63_15240 PF00700 Bacterial flagellin C-terminal helical region LDH63_15240 PF00669 Bacterial flagellin N-terminal helical region LDH63_15245 PF18500 CadC C-terminal domain 1 LDH63_15245 PF00486 Transcriptional regulatory protein, C terminal LDH63_15265 PF06429 Flagellar basal body rod FlgEFG protein C-terminal LDH63_15265 PF00460 Flagella basal body rod protein LDH63_15275 PF02119 Flagellar P-ring protein LDH63_15280 PF02107 Flagellar L-ring protein LDH63_15285 PF00460 Flagella basal body rod protein LDH63_15285 PF06429 Flagellar basal body rod FlgEFG protein C-terminal LDH63_15290 PF06429 Flagellar basal body rod FlgEFG protein C-terminal LDH63_15290 PF00460 Flagella basal body rod protein LDH63_15295 PF07559 Flagellar basal body protein FlaE LDH63_15295 PF06429 Flagellar basal body rod FlgEFG protein C-terminal LDH63_15295 PF00460 Flagella basal body rod protein LDH63_15300 PF13861 FlgD Tudor-like domain LDH63_15300 PF13860 FlgD Ig-like domain LDH63_15300 PF03963 Flagellar hook capping protein - N-terminal region LDH63_15305 PF00460 Flagella basal body rod protein LDH63_15305 PF06429 Flagellar basal body rod FlgEFG protein C-terminal LDH63_15310 PF00460 Flagella basal body rod protein LDH63_15315 PF13144 Chaperone for flagella basal body P-ring formation LDH63_15335 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain LDH63_15335 PF18269 T3SS EscN ATPase C-terminal domain LDH63_15350 PF01514 Secretory protein of YscJ/FliF family LDH63_15350 PF08345 Flagellar M-ring protein C-terminal LDH63_15355 PF02049 Flagellar hook-basal body complex protein FliE LDH63_15360 PF00072 Response regulator receiver domain LDH63_15360 PF00158 Sigma-54 interaction domain LDH63_15360 PF02954 Bacterial regulatory protein, Fis family LDH63_15370 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term LDH63_15375 PF00813 FliP family LDH63_15380 PF01313 Bacterial export proteins, family 3 LDH63_15385 PF01311 Bacterial export proteins, family 1 LDH63_15390 PF01312 FlhB HrpN YscU SpaS Family LDH63_15395 PF00771 FHIPEP family LDH63_15410 PF01497 Periplasmic binding protein LDH63_15415 PF00419 Fimbrial protein LDH63_15415 PF09222 Fimbrial adhesin F17-AG, lectin domain LDH63_15420 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain LDH63_15420 PF02753 Pili assembly chaperone PapD, C-terminal domain LDH63_15425 PF13954 PapC N-terminal domain LDH63_15425 PF00577 Outer membrane usher protein LDH63_15425 PF13953 PapC C-terminal domain LDH63_15445 PF04972 BON domain LDH63_15445 PF00263 Bacterial type II and III secretion system protein LDH63_15445 PF13629 Pilus formation protein N terminal region LDH63_15450 PF13629 Pilus formation protein N terminal region LDH63_15450 PF04972 BON domain LDH63_15450 PF00263 Bacterial type II and III secretion system protein LDH63_15465 PF00437 Type II/IV secretion system protein LDH63_15500 PF02472 Biopolymer transport protein ExbD/TolR LDH63_15505 PF01618 MotA/TolQ/ExbB proton channel family LDH63_15510 PF01053 Cys/Met metabolism PLP-dependent enzyme LDH63_15515 PF09335 SNARE associated Golgi protein LDH63_15520 PF12833 Helix-turn-helix domain LDH63_15520 PF06719 AraC-type transcriptional regulator N-terminus LDH63_15525 PF00465 Iron-containing alcohol dehydrogenase LDH63_15535 PF00248 Aldo/keto reductase family LDH63_15545 PF07731 Multicopper oxidase LDH63_15545 PF07732 Multicopper oxidase LDH63_15550 PF01553 Acyltransferase LDH63_15555 PF00521 DNA gyrase/topoisomerase IV, subunit A LDH63_15555 PF03989 DNA gyrase C-terminal domain, beta-propeller LDH63_15565 PF02525 Flavodoxin-like fold LDH63_15570 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LDH63_15570 PF03466 LysR substrate binding domain LDH63_15575 PF00986 DNA gyrase B subunit, carboxyl terminus LDH63_15575 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LDH63_15575 PF01751 Toprim domain LDH63_15575 PF00204 DNA gyrase B LDH63_15580 PF05728 Uncharacterised protein family (UPF0227) LDH63_15585 PF00149 Calcineurin-like phosphoesterase LDH63_15590 PF06853 Protein of unknown function (DUF1249) LDH63_15595 PF00293 NUDIX domain LDH63_15600 PF02321 Outer membrane efflux protein LDH63_15605 PF01797 Transposase IS200 like LDH63_15610 PF06693 Protein of unknown function (DUF1190) LDH63_15615 PF03738 Glutathionylspermidine synthase preATP-grasp LDH63_15620 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase LDH63_15625 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase LDH63_15630 PF04380 Membrane fusogenic activity LDH63_15640 PF13520 Amino acid permease LDH63_15645 PF01467 Cytidylyltransferase-like LDH63_15645 PF00294 pfkB family carbohydrate kinase LDH63_15650 PF08335 GlnD PII-uridylyltransferase LDH63_15650 PF03710 Glutamate-ammonia ligase adenylyltransferase LDH63_15655 PF01928 CYTH domain LDH63_15660 PF08239 Bacterial SH3 domain LDH63_15665 PF01966 HD domain LDH63_15665 PF01743 Poly A polymerase head domain LDH63_15665 PF12627 Probable RNA and SrmB- binding site of polymerase A LDH63_15670 PF02673 Bacitracin resistance protein BacA LDH63_15675 PF02152 Dihydroneopterin aldolase LDH63_15680 PF02660 Glycerol-3-phosphate acyltransferase LDH63_15685 PF00814 Glycoprotease family LDH63_15690 PF01165 Ribosomal protein S21 LDH63_15695 PF08275 DNA primase catalytic core, N-terminal domain LDH63_15695 PF08278 DNA primase DnaG DnaB-binding LDH63_15695 PF01807 CHC2 zinc finger LDH63_15695 PF10410 DnaB-helicase binding domain of primase LDH63_15700 PF03979 Sigma-70 factor, region 1.1 LDH63_15700 PF00140 Sigma-70 factor, region 1.2 LDH63_15700 PF04545 Sigma-70, region 4 LDH63_15700 PF04539 Sigma-70 region 3 LDH63_15700 PF04546 Sigma-70, non-essential region LDH63_15700 PF04542 Sigma-70 region 2 LDH63_15760 PF03466 LysR substrate binding domain LDH63_15760 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LDH63_15780 PF01042 Endoribonuclease L-PSP LDH63_15805 PF00155 Aminotransferase class I and II LDH63_15820 PF00529 HlyD membrane-fusion protein of T1SS LDH63_15820 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LDH63_15825 PF04632 Fusaric acid resistance protein family LDH63_15835 PF14310 Fibronectin type III-like domain LDH63_15835 PF00933 Glycosyl hydrolase family 3 N terminal domain LDH63_15835 PF01915 Glycosyl hydrolase family 3 C-terminal domain LDH63_15845 PF00528 Binding-protein-dependent transport system inner membrane component LDH63_15850 PF00528 Binding-protein-dependent transport system inner membrane component LDH63_15855 PF01547 Bacterial extracellular solute-binding protein LDH63_15860 PF00356 Bacterial regulatory proteins, lacI family LDH63_15865 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain LDH63_15870 PF03459 TOBE domain LDH63_15870 PF00005 ABC transporter LDH63_15870 PF17912 MalK OB fold domain LDH63_15890 PF13018 Extended Signal Peptide of Type V secretion system LDH63_15890 PF13332 Hemagglutinin repeat LDH63_15890 PF05860 haemagglutination activity domain LDH63_15890 PF04829 Pre-toxin domain with VENN motif LDH63_15895 PF13018 Extended Signal Peptide of Type V secretion system LDH63_15895 PF04829 Pre-toxin domain with VENN motif LDH63_15895 PF05860 haemagglutination activity domain LDH63_15895 PF13332 Hemagglutinin repeat LDH63_15910 PF04829 Pre-toxin domain with VENN motif LDH63_15910 PF13332 Hemagglutinin repeat LDH63_15915 PF04829 Pre-toxin domain with VENN motif LDH63_15915 PF13332 Hemagglutinin repeat LDH63_15925 PF13018 Extended Signal Peptide of Type V secretion system LDH63_15925 PF13332 Hemagglutinin repeat LDH63_15925 PF05860 haemagglutination activity domain LDH63_15925 PF04829 Pre-toxin domain with VENN motif LDH63_15930 PF17287 POTRA domain LDH63_15930 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB LDH63_15930 PF08479 POTRA domain, ShlB-type LDH63_15935 PF00092 von Willebrand factor type A domain LDH63_15940 PF02342 TerD domain LDH63_15965 PF03729 Short repeat of unknown function (DUF308) LDH63_15970 PF07992 Pyridine nucleotide-disulphide oxidoreductase LDH63_15970 PF00724 NADH:flavin oxidoreductase / NADH oxidase family LDH63_15975 PF05175 Methyltransferase small domain LDH63_15980 PF03797 Autotransporter beta-domain LDH63_15985 PF01863 Protein of unknown function DUF45 LDH63_15990 PF01408 Oxidoreductase family, NAD-binding Rossmann fold LDH63_15995 PF00375 Sodium:dicarboxylate symporter family LDH63_16000 PF01797 Transposase IS200 like LDH63_16005 PF10688 Bacterial inner membrane protein LDH63_16010 PF08666 SAF domain LDH63_16010 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus LDH63_16015 PF08125 Mannitol dehydrogenase C-terminal domain LDH63_16015 PF01232 Mannitol dehydrogenase Rossmann domain LDH63_16020 PF02614 Glucuronate isomerase LDH63_16030 PF07690 Major Facilitator Superfamily LDH63_16035 PF00392 Bacterial regulatory proteins, gntR family LDH63_16035 PF07729 FCD domain LDH63_16045 PF09335 SNARE associated Golgi protein LDH63_16050 PF13721 SecD export protein N-terminal TM region LDH63_16060 PF05957 Bacterial protein of unknown function (DUF883) LDH63_16065 PF07332 Putative Actinobacterial Holin-X, holin superfamily III LDH63_16075 PF07681 DoxX LDH63_16085 PF02796 Helix-turn-helix domain of resolvase LDH63_16085 PF00665 Integrase core domain LDH63_16090 PF01695 IstB-like ATP binding protein LDH63_16095 PF00293 NUDIX domain LDH63_16105 PF07516 SecA Wing and Scaffold domain LDH63_16105 PF01043 SecA preprotein cross-linking domain LDH63_16105 PF02810 SEC-C motif LDH63_16105 PF07517 SecA DEAD-like domain LDH63_16110 PF06558 Secretion monitor precursor protein (SecM) LDH63_16120 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase LDH63_16125 PF12327 FtsZ family, C-terminal domain LDH63_16125 PF00091 Tubulin/FtsZ family, GTPase domain LDH63_16130 PF02491 SHS2 domain inserted in FTSA LDH63_16135 PF03799 Cell division protein FtsQ LDH63_16135 PF08478 POTRA domain, FtsQ-type LDH63_16140 PF01820 D-ala D-ala ligase N-terminus LDH63_16140 PF07478 D-ala D-ala ligase C-terminus LDH63_16145 PF01225 Mur ligase family, catalytic domain LDH63_16145 PF02875 Mur ligase family, glutamate ligase domain LDH63_16145 PF08245 Mur ligase middle domain LDH63_16150 PF04101 Glycosyltransferase family 28 C-terminal domain LDH63_16150 PF03033 Glycosyltransferase family 28 N-terminal domain LDH63_16155 PF01098 Cell cycle protein LDH63_16160 PF02875 Mur ligase family, glutamate ligase domain LDH63_16160 PF08245 Mur ligase middle domain LDH63_16165 PF00953 Glycosyl transferase family 4 LDH63_16165 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 LDH63_16170 PF02875 Mur ligase family, glutamate ligase domain LDH63_16170 PF08245 Mur ligase middle domain LDH63_16170 PF01225 Mur ligase family, catalytic domain LDH63_16175 PF02875 Mur ligase family, glutamate ligase domain LDH63_16175 PF08245 Mur ligase middle domain LDH63_16175 PF01225 Mur ligase family, catalytic domain LDH63_16180 PF03717 Penicillin-binding Protein dimerisation domain LDH63_16180 PF00905 Penicillin binding protein transpeptidase domain LDH63_16185 PF04999 Cell division protein FtsL LDH63_16190 PF01795 MraW methylase family LDH63_16195 PF02381 MraZ protein, putative antitoxin-like LDH63_16205 PF06610 L-alanine exporter LDH63_16210 PF00356 Bacterial regulatory proteins, lacI family LDH63_16210 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family LDH63_16215 PF01797 Transposase IS200 like LDH63_16220 PF10369 Small subunit of acetolactate synthase LDH63_16225 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain LDH63_16225 PF00205 Thiamine pyrophosphate enzyme, central domain LDH63_16225 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain LDH63_16230 PF00501 AMP-binding enzyme LDH63_16235 PF03466 LysR substrate binding domain LDH63_16235 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LDH63_16245 PF01797 Transposase IS200 like LDH63_16250 PF00682 HMGL-like LDH63_16250 PF08502 LeuA allosteric (dimerisation) domain LDH63_16255 PF00180 Isocitrate/isopropylmalate dehydrogenase LDH63_16260 PF00330 Aconitase family (aconitate hydratase) LDH63_16265 PF00694 Aconitase C-terminal domain LDH63_16270 PF07690 Major Facilitator Superfamily LDH63_16275 PF12793 Sugar transport-related sRNA regulator N-term LDH63_16275 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle LDH63_16290 PF00528 Binding-protein-dependent transport system inner membrane component LDH63_16295 PF00005 ABC transporter LDH63_16300 PF09335 SNARE associated Golgi protein LDH63_16305 PF00136 DNA polymerase family B LDH63_16305 PF03104 DNA polymerase family B, exonuclease domain LDH63_16310 PF00271 Helicase conserved C-terminal domain LDH63_16310 PF12137 RNA polymerase recycling family C-terminal LDH63_16310 PF00176 SNF2 family N-terminal domain LDH63_16310 PF18339 RapA N-terminal Tudor like domain 1 LDH63_16310 PF18337 RapA N-terminal Tudor like domain LDH63_16325 PF06761 Intracellular multiplication and human macrophage-killing LDH63_16325 PF14331 ImcF-related N-terminal domain LDH63_16325 PF06744 Type VI secretion protein IcmF C-terminal LDH63_16330 PF05736 OprF membrane domain LDH63_16330 PF00691 OmpA family LDH63_16335 PF05936 Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE LDH63_16365 PF06715 Gp5 C-terminal repeat (3 copies) LDH63_16365 PF04717 Type VI secretion system, phage-baseplate injector LDH63_16370 PF07724 AAA domain (Cdc48 subfamily) LDH63_16370 PF10431 C-terminal, D2-small domain, of ClpB protein LDH63_16370 PF17871 AAA lid domain LDH63_16370 PF00004 ATPase family associated with various cellular activities (AAA) LDH63_16380 PF05947 Type VI secretion system, TssF LDH63_16395 PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath LDH63_16400 PF05591 Type VI secretion system, VipA, VC_A0107 or Hcp2 LDH63_16415 PF00849 RNA pseudouridylate synthase LDH63_16420 PF05099 Tellurite resistance protein TerB LDH63_16420 PF00226 DnaJ domain LDH63_16425 PF03968 OstA-like protein LDH63_16425 PF04453 LPS transport system D LDH63_16430 PF00639 PPIC-type PPIASE domain LDH63_16430 PF09312 SurA N-terminal domain LDH63_16435 PF04166 Pyridoxal phosphate biosynthetic protein PdxA LDH63_16440 PF00398 Ribosomal RNA adenine dimethylase LDH63_16445 PF04379 ApaG domain LDH63_16450 PF00149 Calcineurin-like phosphoesterase LDH63_16465 PF01797 Transposase IS200 like LDH63_16470 PF00186 Dihydrofolate reductase LDH63_16475 PF12821 Threonine/Serine exporter, ThrE LDH63_16480 PF06738 Putative threonine/serine exporter LDH63_16485 PF01810 LysE type translocator LDH63_16490 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain LDH63_16490 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain LDH63_16490 PF02142 MGS-like domain LDH63_16495 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain LDH63_16495 PF00117 Glutamine amidotransferase class-I LDH63_16500 PF05173 Dihydrodipicolinate reductase, C-terminus LDH63_16500 PF01113 Dihydrodipicolinate reductase, N-terminus LDH63_16505 PF01797 Transposase IS200 like LDH63_16510 PF02401 LytB protein LDH63_16515 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase LDH63_16520 PF01252 Signal peptidase (SPase) II LDH63_16525 PF08264 Anticodon-binding domain of tRNA LDH63_16525 PF00133 tRNA synthetases class I (I, L, M and V) LDH63_16525 PF06827 Zinc finger found in FPG and IleRS LDH63_16530 PF06574 FAD synthetase LDH63_16530 PF01687 Riboflavin kinase LDH63_16535 PF01649 Ribosomal protein S20 LDH63_16540 PF03466 LysR substrate binding domain LDH63_16540 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LDH63_16545 PF06965 Na+/H+ antiporter 1 LDH63_16550 PF00226 DnaJ domain LDH63_16550 PF01556 DnaJ C terminal domain LDH63_16550 PF00684 DnaJ central domain LDH63_16555 PF00012 Hsp70 protein LDH63_16560 PF01184 GPR1/FUN34/yaaH family LDH63_16570 PF07690 Major Facilitator Superfamily LDH63_16575 PF00994 Probable molybdopterin binding domain LDH63_16580 PF00923 Transaldolase/Fructose-6-phosphate aldolase LDH63_16590 PF03883 Peroxide stress protein YaaA LDH63_16595 PF00291 Pyridoxal-phosphate dependent enzyme LDH63_16595 PF14821 Threonine synthase N terminus LDH63_16600 PF00288 GHMP kinases N terminal domain LDH63_16600 PF08544 GHMP kinases C terminal LDH63_16605 PF03447 Homoserine dehydrogenase, NAD binding domain LDH63_16605 PF00696 Amino acid kinase family LDH63_16605 PF00742 Homoserine dehydrogenase LDH63_16605 PF13840 ACT domain LDH63_16605 PF01842 ACT domain LDH63_16610 PF08254 Threonine leader peptide LDH63_16620 PF00072 Response regulator receiver domain LDH63_16620 PF00486 Transcriptional regulatory protein, C terminal LDH63_16625 PF05981 CreA protein LDH63_16630 PF06445 GyrI-like small molecule binding domain LDH63_16630 PF12833 Helix-turn-helix domain LDH63_16635 PF00300 Histidine phosphatase superfamily (branch 1) LDH63_16640 PF01931 Protein of unknown function DUF84 LDH63_16645 PF01371 Trp repressor protein LDH63_16650 PF01464 Transglycosylase SLT domain LDH63_16650 PF14718 Soluble lytic murein transglycosylase L domain LDH63_16655 PF00689 Cation transporting ATPase, C-terminus LDH63_16655 PF00690 Cation transporter/ATPase, N-terminus LDH63_16665 PF00990 Diguanylate cyclase, GGDEF domain LDH63_16665 PF17152 Periplasmic sensor domain LDH63_16670 PF00691 OmpA family LDH63_16680 PF02661 Fic/DOC family LDH63_16685 PF13521 AAA domain LDH63_16685 PF01381 Helix-turn-helix LDH63_16690 PF18073 Rubredoxin metal binding domain LDH63_16695 PF18429 Domain of unknown function (DUF5609) LDH63_16700 PF10144 Bacterial virulence factor haemolysin LDH63_16705 PF01048 Phosphorylase superfamily LDH63_16710 PF01676 Metalloenzyme superfamily LDH63_16720 PF01791 DeoC/LacD family aldolase LDH63_16725 PF01773 Na+ dependent nucleoside transporter N-terminus LDH63_16725 PF07662 Na+ dependent nucleoside transporter C-terminus LDH63_16725 PF07670 Nucleoside recognition LDH63_16730 PF01026 TatD related DNase LDH63_16735 PF01734 Patatin-like phospholipase LDH63_16740 PF07043 Protein of unknown function (DUF1328) LDH63_16745 PF04972 BON domain LDH63_16750 PF00009 Elongation factor Tu GTP binding domain LDH63_16750 PF03144 Elongation factor Tu domain 2 LDH63_16750 PF16658 Class II release factor RF3, C-terminal domain LDH63_16755 PF00583 Acetyltransferase (GNAT) family LDH63_16760 PF03603 DNA polymerase III psi subunit LDH63_16765 PF08468 Methyltransferase small domain N-terminal LDH63_16765 PF05175 Methyltransferase small domain LDH63_16775 PF07256 Protein of unknown function (DUF1435) LDH63_16780 PF00990 Diguanylate cyclase, GGDEF domain LDH63_16785 PF01095 Pectinesterase LDH63_16800 PF00873 AcrB/AcrD/AcrF family LDH63_16805 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LDH63_16820 PF01075 Glycosyltransferase family 9 (heptosyltransferase) LDH63_16825 PF02782 FGGY family of carbohydrate kinases, C-terminal domain LDH63_16825 PF00370 FGGY family of carbohydrate kinases, N-terminal domain LDH63_16840 PF00005 ABC transporter LDH63_16845 PF02653 Branched-chain amino acid transport system / permease component LDH63_16850 PF02653 Branched-chain amino acid transport system / permease component LDH63_16855 PF13407 Periplasmic binding protein domain LDH63_16860 PF01791 DeoC/LacD family aldolase LDH63_16865 PF03992 Antibiotic biosynthesis monooxygenase LDH63_16870 PF10696 Protein of unknown function (DUF2501) LDH63_16875 PF00391 PEP-utilising enzyme, mobile domain LDH63_16875 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 LDH63_16875 PF00381 PTS HPr component phosphorylation site LDH63_16875 PF05524 PEP-utilising enzyme, N-terminal LDH63_16875 PF02896 PEP-utilising enzyme, TIM barrel domain LDH63_16885 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit LDH63_16890 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit LDH63_16895 PF12833 Helix-turn-helix domain LDH63_16905 PF05987 Bacterial protein of unknown function (DUF898) LDH63_16920 PF00665 Integrase core domain LDH63_16945 PF01555 DNA methylase LDH63_16960 PF12102 Domain of unknown function (DUF3578) LDH63_16960 PF07728 AAA domain (dynein-related subfamily) LDH63_16965 PF00665 Integrase core domain LDH63_16965 PF02796 Helix-turn-helix domain of resolvase LDH63_16970 PF01695 IstB-like ATP binding protein LDH63_16975 PF07338 Protein of unknown function (DUF1471) LDH63_16980 PF00441 Acyl-CoA dehydrogenase, C-terminal domain LDH63_16980 PF02770 Acyl-CoA dehydrogenase, middle domain LDH63_16980 PF18158 Adaptive response protein AidB N-terminal domain LDH63_16985 PF00588 SpoU rRNA Methylase family LDH63_16985 PF08032 RNA 2'-O ribose methyltransferase substrate binding LDH63_16990 PF00575 S1 RNA binding domain LDH63_16990 PF08461 Ribonuclease R winged-helix domain LDH63_16990 PF17876 Cold shock domain LDH63_16990 PF00773 RNB domain LDH63_16990 PF08206 Ribonuclease B OB domain LDH63_16995 PF02082 Transcriptional regulator LDH63_17000 PF00709 Adenylosuccinate synthetase LDH63_17005 PF09838 Uncharacterized protein conserved in bacteria (DUF2065) LDH63_17010 PF01145 SPFH domain / Band 7 family LDH63_17015 PF12221 Bacterial membrane protein N terminal LDH63_17015 PF01145 SPFH domain / Band 7 family LDH63_17020 PF16360 GTP-binding GTPase Middle Region LDH63_17020 PF13167 GTP-binding GTPase N-terminal LDH63_17020 PF01926 50S ribosome-binding GTPase LDH63_17025 PF17209 Hfq protein LDH63_17035 PF01119 DNA mismatch repair protein, C-terminal domain LDH63_17035 PF08676 MutL C terminal dimerisation domain LDH63_17040 PF01520 N-acetylmuramoyl-L-alanine amidase LDH63_17045 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE LDH63_17050 PF01256 Carbohydrate kinase LDH63_17050 PF03853 YjeF-related protein N-terminus LDH63_17055 PF08331 Domain of unknown function (DUF1730) LDH63_17065 PF00929 Exonuclease LDH63_17070 PF03193 RsgA GTPase LDH63_17075 PF02666 Phosphatidylserine decarboxylase LDH63_17080 PF00924 Mechanosensitive ion channel LDH63_17080 PF12795 Mechanosensitive ion channel porin domain LDH63_17080 PF12794 Mechanosensitive ion channel inner membrane domain 1 LDH63_17085 PF00152 tRNA synthetases class II (D, K and N) LDH63_17095 PF00890 FAD binding domain LDH63_17095 PF02910 Fumarate reductase flavoprotein C-term LDH63_17100 PF13085 2Fe-2S iron-sulfur cluster binding domain LDH63_17100 PF13183 4Fe-4S dicluster domain LDH63_17105 PF02300 Fumarate reductase subunit C LDH63_17110 PF02313 Fumarate reductase subunit D LDH63_17115 PF00893 Small Multidrug Resistance protein LDH63_17120 PF08207 Elongation factor P (EF-P) KOW-like domain LDH63_17120 PF09285 Elongation factor P, C-terminal LDH63_17120 PF01132 Elongation factor P (EF-P) OB domain LDH63_17125 PF04055 Radical SAM superfamily LDH63_17130 PF13698 Domain of unknown function (DUF4156) LDH63_17135 PF00118 TCP-1/cpn60 chaperonin family LDH63_17140 PF00166 Chaperonin 10 Kd subunit LDH63_17145 PF04186 FxsA cytoplasmic membrane protein LDH63_17150 PF10415 Fumarase C C-terminus LDH63_17150 PF00206 Lyase LDH63_17155 PF03605 Anaerobic c4-dicarboxylate membrane transporter LDH63_17160 PF03091 CutA1 divalent ion tolerance protein LDH63_17165 PF11412 Disulphide bond corrector protein DsbC LDH63_17165 PF02683 Cytochrome C biogenesis protein transmembrane region LDH63_17170 PF01568 Molydopterin dinucleotide binding domain LDH63_17170 PF00384 Molybdopterin oxidoreductase LDH63_17170 PF04879 Molybdopterin oxidoreductase Fe4S4 domain LDH63_17175 PF12800 4Fe-4S binding domain LDH63_17175 PF13247 4Fe-4S dicluster domain LDH63_17180 PF13247 4Fe-4S dicluster domain LDH63_17180 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster LDH63_17180 PF07992 Pyridine nucleotide-disulphide oxidoreductase LDH63_17215 PF06379 L-rhamnose-proton symport protein (RhaT) LDH63_17220 PF02311 AraC-like ligand binding domain LDH63_17220 PF12833 Helix-turn-helix domain LDH63_17225 PF02311 AraC-like ligand binding domain LDH63_17225 PF12833 Helix-turn-helix domain LDH63_17235 PF02782 FGGY family of carbohydrate kinases, C-terminal domain LDH63_17235 PF00370 FGGY family of carbohydrate kinases, N-terminal domain LDH63_17240 PF06134 L-rhamnose isomerase (RhaA) LDH63_17245 PF00596 Class II Aldolase and Adducin N-terminal domain LDH63_17250 PF00465 Iron-containing alcohol dehydrogenase LDH63_17255 PF05336 L-rhamnose mutarotase LDH63_17260 PF00436 Single-strand binding protein family LDH63_17265 PF00005 ABC transporter LDH63_17265 PF17755 UvrA DNA-binding domain LDH63_17265 PF17760 UvrA interaction domain LDH63_17270 PF04237 YjbR LDH63_17275 PF00155 Aminotransferase class I and II LDH63_17280 PF00842 Alanine racemase, C-terminal domain LDH63_17280 PF01168 Alanine racemase, N-terminal domain LDH63_17285 PF00772 DnaB-like helicase N terminal domain LDH63_17285 PF03796 DnaB-like helicase C terminal domain LDH63_17290 PF08240 Alcohol dehydrogenase GroES-like domain LDH63_17290 PF00107 Zinc-binding dehydrogenase LDH63_17295 PF09583 Phage shock protein G (Phageshock_PspG) LDH63_17300 PF01207 Dihydrouridine synthase (Dus) LDH63_17305 PF01475 Ferric uptake regulator family LDH63_17310 PF01726 LexA DNA binding domain LDH63_17310 PF00717 Peptidase S24-like LDH63_17325 PF01040 UbiA prenyltransferase family LDH63_17330 PF04345 Chorismate lyase LDH63_17335 PF12951 Passenger-associated-transport-repeat LDH63_17340 PF01565 FAD binding domain LDH63_17340 PF08031 Berberine and berberine like LDH63_17355 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain LDH63_17360 PF00577 Outer membrane usher protein LDH63_17360 PF13953 PapC C-terminal domain LDH63_17360 PF13954 PapC N-terminal domain LDH63_17370 PF02342 TerD domain LDH63_17375 PF02342 TerD domain LDH63_17380 PF03741 Integral membrane protein TerC family LDH63_17385 PF05099 Tellurite resistance protein TerB LDH63_17390 PF02342 TerD domain LDH63_17395 PF02342 TerD domain LDH63_17415 PF15608 PELOTA RNA binding domain LDH63_17415 PF11202 Phosphoribosyl transferase (PRTase) LDH63_17435 PF04055 Radical SAM superfamily LDH63_17440 PF06228 Haem utilisation ChuX/HutX LDH63_17445 PF13460 NAD(P)H-binding LDH63_17450 PF10636 Hemin uptake protein hemP LDH63_17455 PF00593 TonB dependent receptor LDH63_17455 PF07715 TonB-dependent Receptor Plug Domain LDH63_17460 PF05171 Haemin-degrading HemS.ChuX domain LDH63_17465 PF01497 Periplasmic binding protein LDH63_17470 PF01032 FecCD transport family LDH63_17475 PF00005 ABC transporter LDH63_17480 PF01053 Cys/Met metabolism PLP-dependent enzyme LDH63_17485 PF03222 Tryptophan/tyrosine permease family LDH63_17490 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LDH63_17490 PF03466 LysR substrate binding domain LDH63_17495 PF01206 Sulfurtransferase TusA LDH63_17500 PF04143 Sulphur transport LDH63_17510 PF01312 FlhB HrpN YscU SpaS Family LDH63_17515 PF01311 Bacterial export proteins, family 1 LDH63_17520 PF01313 Bacterial export proteins, family 3 LDH63_17525 PF00813 FliP family LDH63_17530 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term LDH63_17545 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain LDH63_17545 PF18269 T3SS EscN ATPase C-terminal domain LDH63_17550 PF00771 FHIPEP family LDH63_17565 PF01514 Secretory protein of YscJ/FliF family LDH63_17600 PF00263 Bacterial type II and III secretion system protein LDH63_17600 PF03958 Bacterial type II/III secretion system short domain LDH63_17605 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) LDH63_17605 PF00672 HAMP domain LDH63_17605 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LDH63_17605 PF00512 His Kinase A (phospho-acceptor) domain LDH63_17605 PF01627 Hpt domain LDH63_17605 PF00072 Response regulator receiver domain LDH63_17610 PF00072 Response regulator receiver domain LDH63_17610 PF00196 Bacterial regulatory proteins, luxR family LDH63_17615 PF00375 Sodium:dicarboxylate symporter family LDH63_17620 PF16177 Acetyl-coenzyme A synthetase N-terminus LDH63_17620 PF00501 AMP-binding enzyme LDH63_17620 PF13193 AMP-binding enzyme C-terminal domain LDH63_17625 PF04341 Protein of unknown function, DUF485 LDH63_17630 PF00474 Sodium:solute symporter family LDH63_17640 PF02796 Helix-turn-helix domain of resolvase LDH63_17640 PF00665 Integrase core domain LDH63_17645 PF01695 IstB-like ATP binding protein LDH63_17685 PF02142 MGS-like domain LDH63_17685 PF01808 AICARFT/IMPCHase bienzyme LDH63_17690 PF02844 Phosphoribosylglycinamide synthetase, N domain LDH63_17690 PF02843 Phosphoribosylglycinamide synthetase, C domain LDH63_17690 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain LDH63_17695 PF07356 Protein of unknown function (DUF1481) LDH63_17700 PF00216 Bacterial DNA-binding protein LDH63_17705 PF04222 Protein of unknown function (DUF416) LDH63_17710 PF04493 Endonuclease V LDH63_17715 PF01208 Uroporphyrinogen decarboxylase (URO-D) LDH63_17725 PF00293 NUDIX domain LDH63_17725 PF09297 NADH pyrophosphatase zinc ribbon domain LDH63_17730 PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ LDH63_17735 PF13667 ThiC-associated domain LDH63_17735 PF01964 Radical SAM ThiC family LDH63_17740 PF02581 Thiamine monophosphate synthase LDH63_17745 PF00899 ThiF family LDH63_17755 PF05690 Thiazole biosynthesis protein ThiG LDH63_17760 PF04055 Radical SAM superfamily LDH63_17760 PF06968 Biotin and Thiamin Synthesis associated domain LDH63_17765 PF01797 Transposase IS200 like LDH63_17770 PF05000 RNA polymerase Rpb1, domain 4 LDH63_17770 PF04997 RNA polymerase Rpb1, domain 1 LDH63_17770 PF00623 RNA polymerase Rpb1, domain 2 LDH63_17770 PF04998 RNA polymerase Rpb1, domain 5 LDH63_17770 PF04983 RNA polymerase Rpb1, domain 3 LDH63_17775 PF04563 RNA polymerase beta subunit LDH63_17775 PF04561 RNA polymerase Rpb2, domain 2 LDH63_17775 PF04565 RNA polymerase Rpb2, domain 3 LDH63_17775 PF10385 RNA polymerase beta subunit external 1 domain LDH63_17775 PF00562 RNA polymerase Rpb2, domain 6 LDH63_17775 PF04560 RNA polymerase Rpb2, domain 7 LDH63_17780 PF00542 Ribosomal protein L7/L12 C-terminal domain LDH63_17780 PF16320 Ribosomal protein L7/L12 dimerisation domain LDH63_17785 PF00466 Ribosomal protein L10 LDH63_17790 PF00687 Ribosomal protein L1p/L10e family LDH63_17795 PF00298 Ribosomal protein L11, RNA binding domain LDH63_17795 PF03946 Ribosomal protein L11, N-terminal domain LDH63_17800 PF00467 KOW motif LDH63_17800 PF02357 Transcription termination factor nusG LDH63_17805 PF00584 SecE/Sec61-gamma subunits of protein translocation complex LDH63_17810 PF03143 Elongation factor Tu C-terminal domain LDH63_17810 PF03144 Elongation factor Tu domain 2 LDH63_17810 PF00009 Elongation factor Tu GTP binding domain LDH63_17835 PF01695 IstB-like ATP binding protein LDH63_17840 PF00665 Integrase core domain LDH63_17840 PF02796 Helix-turn-helix domain of resolvase LDH63_17845 PF13673 Acetyltransferase (GNAT) domain LDH63_17850 PF00485 Phosphoribulokinase / Uridine kinase family LDH63_17855 PF02237 Biotin protein ligase C terminal domain LDH63_17855 PF03099 Biotin/lipoate A/B protein ligase family LDH63_17855 PF08279 HTH domain LDH63_17860 PF01565 FAD binding domain LDH63_17860 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain LDH63_17890 PF00004 ATPase family associated with various cellular activities (AAA) LDH63_17890 PF07724 AAA domain (Cdc48 subfamily) LDH63_17890 PF17871 AAA lid domain LDH63_17890 PF02861 Clp amino terminal domain, pathogenicity island component LDH63_17890 PF10431 C-terminal, D2-small domain, of ClpB protein LDH63_17895 PF02578 Multi-copper polyphenol oxidoreductase laccase LDH63_17900 PF01479 S4 domain LDH63_17900 PF00849 RNA pseudouridylate synthase LDH63_17905 PF13525 Outer membrane lipoprotein LDH63_17910 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein LDH63_17915 PF01797 Transposase IS200 like LDH63_17925 PF02796 Helix-turn-helix domain of resolvase LDH63_17925 PF00665 Integrase core domain LDH63_17930 PF01695 IstB-like ATP binding protein LDH63_17940 PF01817 Chorismate mutase type II LDH63_17940 PF02153 Prephenate dehydrogenase LDH63_17945 PF00793 DAHP synthetase I family LDH63_17950 PF04397 LytTr DNA-binding domain LDH63_17950 PF00072 Response regulator receiver domain LDH63_17960 PF04338 Protein of unknown function, DUF481 LDH63_17970 PF01245 Ribosomal protein L19 LDH63_17975 PF01746 tRNA (Guanine-1)-methyltransferase LDH63_17980 PF01782 RimM N-terminal domain LDH63_17980 PF05239 PRC-barrel domain LDH63_17985 PF00886 Ribosomal protein S16 LDH63_17990 PF02881 SRP54-type protein, helical bundle domain LDH63_17990 PF02978 Signal peptide binding domain LDH63_17990 PF00448 SRP54-type protein, GTPase domain LDH63_17995 PF01578 Cytochrome C assembly protein LDH63_18000 PF00571 CBS domain LDH63_18000 PF03471 Transporter associated domain LDH63_18000 PF01595 Cyclin M transmembrane N-terminal domain LDH63_18010 PF02664 S-Ribosylhomocysteinase (LuxS) LDH63_18015 PF04262 Glutamate-cysteine ligase LDH63_18020 PF09335 SNARE associated Golgi protein LDH63_18025 PF13419 Haloacid dehalogenase-like hydrolase LDH63_18055 PF02599 Global regulator protein family LDH63_18060 PF02272 DHHA1 domain LDH63_18060 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain LDH63_18060 PF01411 tRNA synthetases class II (A) LDH63_18065 PF02631 RecX family LDH63_18070 PF00154 recA bacterial DNA recombination protein LDH63_18075 PF02464 Competence-damaged protein LDH63_18080 PF07690 Major Facilitator Superfamily LDH63_18095 PF02782 FGGY family of carbohydrate kinases, C-terminal domain LDH63_18095 PF00370 FGGY family of carbohydrate kinases, N-terminal domain LDH63_18100 PF02779 Transketolase, pyrimidine binding domain LDH63_18100 PF02780 Transketolase, C-terminal domain LDH63_18105 PF00456 Transketolase, thiamine diphosphate binding domain LDH63_18110 PF02653 Branched-chain amino acid transport system / permease component LDH63_18115 PF00005 ABC transporter LDH63_18125 PF13407 Periplasmic binding protein domain LDH63_18130 PF00141 Peroxidase LDH63_18135 PF07361 Cytochrome b562 LDH63_18140 PF01292 Prokaryotic cytochrome b561 LDH63_18145 PF02613 Nitrate reductase delta subunit LDH63_18150 PF04976 DMSO reductase anchor subunit (DmsC) LDH63_18155 PF12800 4Fe-4S binding domain LDH63_18155 PF13247 4Fe-4S dicluster domain LDH63_18160 PF04879 Molybdopterin oxidoreductase Fe4S4 domain LDH63_18160 PF00384 Molybdopterin oxidoreductase LDH63_18160 PF01568 Molydopterin dinucleotide binding domain LDH63_18165 PF00596 Class II Aldolase and Adducin N-terminal domain LDH63_18170 PF00455 DeoR C terminal sensor domain LDH63_18170 PF08220 DeoR-like helix-turn-helix domain LDH63_18180 PF01797 Transposase IS200 like LDH63_18185 PF00005 ABC transporter LDH63_18190 PF02653 Branched-chain amino acid transport system / permease component LDH63_18195 PF02653 Branched-chain amino acid transport system / permease component LDH63_18200 PF01261 Xylose isomerase-like TIM barrel LDH63_18205 PF02782 FGGY family of carbohydrate kinases, C-terminal domain LDH63_18205 PF00370 FGGY family of carbohydrate kinases, N-terminal domain LDH63_18210 PF05681 Fumarate hydratase (Fumerase) LDH63_18210 PF05683 Fumarase C-terminus LDH63_18220 PF00557 Metallopeptidase family M24 LDH63_18230 PF07715 TonB-dependent Receptor Plug Domain LDH63_18230 PF00593 TonB dependent receptor LDH63_18240 PF14376 Haem-binding domain LDH63_18240 PF00034 Cytochrome c LDH63_18240 PF03150 Di-haem cytochrome c peroxidase LDH63_18245 PF00497 Bacterial extracellular solute-binding proteins, family 3 LDH63_18260 PF01022 Bacterial regulatory protein, arsR family LDH63_18265 PF02040 Arsenical pump membrane protein LDH63_18270 PF13936 Helix-turn-helix domain LDH63_18270 PF04198 Putative sugar-binding domain LDH63_18275 PF02734 DAK2 domain LDH63_18280 PF02733 Dak1 domain LDH63_18290 PF00107 Zinc-binding dehydrogenase LDH63_18290 PF08240 Alcohol dehydrogenase GroES-like domain LDH63_18295 PF02502 Ribose/Galactose Isomerase LDH63_18300 PF00488 MutS domain V LDH63_18300 PF01624 MutS domain I LDH63_18300 PF05192 MutS domain III LDH63_18300 PF05188 MutS domain II LDH63_18300 PF05190 MutS family domain IV LDH63_18305 PF00140 Sigma-70 factor, region 1.2 LDH63_18305 PF04542 Sigma-70 region 2 LDH63_18305 PF04539 Sigma-70 region 3 LDH63_18305 PF04545 Sigma-70, region 4 LDH63_18310 PF01476 LysM domain LDH63_18310 PF01551 Peptidase family M23 LDH63_18320 PF01975 Survival protein SurE LDH63_18325 PF01142 tRNA pseudouridine synthase D (TruD) LDH63_18330 PF02542 YgbB family LDH63_18335 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase LDH63_18340 PF04977 Septum formation initiator LDH63_18345 PF12084 Protein of unknown function (DUF3561) LDH63_18355 PF00009 Elongation factor Tu GTP binding domain LDH63_18360 PF01507 Phosphoadenosine phosphosulfate reductase family LDH63_18365 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases LDH63_18365 PF14824 Sirohaem biosynthesis protein central LDH63_18365 PF10414 Sirohaem synthase dimerisation region LDH63_18395 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain LDH63_18395 PF01077 Nitrite and sulphite reductase 4Fe-4S domain LDH63_18400 PF00258 Flavodoxin LDH63_18400 PF00667 FAD binding domain LDH63_18400 PF00175 Oxidoreductase NAD-binding domain LDH63_18405 PF01242 6-pyruvoyl tetrahydropterin synthase LDH63_18410 PF04055 Radical SAM superfamily LDH63_18415 PF00080 Copper/zinc superoxide dismutase (SODC) LDH63_18420 PF03952 Enolase, N-terminal domain LDH63_18420 PF00113 Enolase, C-terminal TIM barrel domain LDH63_18425 PF06418 CTP synthase N-terminus LDH63_18425 PF00117 Glutamine amidotransferase class-I LDH63_18430 PF03819 MazG nucleotide pyrophosphohydrolase domain LDH63_18435 PF13291 ACT domain LDH63_18435 PF04607 Region found in RelA / SpoT proteins LDH63_18435 PF02824 TGS domain LDH63_18440 PF01938 TRAM domain LDH63_18440 PF05958 tRNA (Uracil-5-)-methyltransferase LDH63_18450 PF00072 Response regulator receiver domain LDH63_18450 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) LDH63_18450 PF01627 Hpt domain LDH63_18450 PF00672 HAMP domain LDH63_18450 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LDH63_18450 PF00512 His Kinase A (phospho-acceptor) domain LDH63_18455 PF00595 PDZ domain LDH63_18460 PF01966 HD domain LDH63_18460 PF13286 Phosphohydrolase-associated domain LDH63_18465 PF01048 Phosphorylase superfamily LDH63_18470 PF01497 Periplasmic binding protein LDH63_18475 PF03458 UPF0126 domain LDH63_18480 PF01521 Iron-sulphur cluster biosynthesis LDH63_18485 PF00654 Voltage gated chloride channel LDH63_18490 PF00202 Aminotransferase class-III LDH63_18495 PF01032 FecCD transport family LDH63_18500 PF01497 Periplasmic binding protein LDH63_18510 PF00005 ABC transporter LDH63_18515 PF14814 Bifunctional transglycosylase second domain LDH63_18515 PF14812 Transmembrane domain of transglycosylase PBP1 at N-terminal LDH63_18515 PF00905 Penicillin binding protein transpeptidase domain LDH63_18515 PF00912 Transglycosylase LDH63_18520 PF00270 DEAD/DEAH box helicase LDH63_18520 PF04408 Helicase associated domain (HA2) LDH63_18520 PF00271 Helicase conserved C-terminal domain LDH63_18520 PF08482 ATP-dependent helicase C-terminal LDH63_18525 PF02834 LigT like Phosphoesterase LDH63_18530 PF03749 Sugar fermentation stimulation protein RE domain LDH63_18530 PF17746 SfsA N-terminal OB domain LDH63_18535 PF01258 Prokaryotic dksA/traR C4-type zinc finger LDH63_18540 PF00749 tRNA synthetases class I (E and Q), catalytic domain LDH63_18545 PF12626 Polymerase A arginine-rich C-terminus LDH63_18545 PF12627 Probable RNA and SrmB- binding site of polymerase A LDH63_18545 PF01743 Poly A polymerase head domain LDH63_18550 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) LDH63_18555 PF02548 Ketopantoate hydroxymethyltransferase LDH63_18560 PF02569 Pantoate-beta-alanine ligase LDH63_18565 PF02261 Aspartate decarboxylase LDH63_18575 PF01061 ABC-2 type transporter LDH63_18580 PF00005 ABC transporter LDH63_18585 PF00484 Carbonic anhydrase LDH63_18590 PF00156 Phosphoribosyl transferase domain LDH63_18595 PF07732 Multicopper oxidase LDH63_18595 PF07731 Multicopper oxidase LDH63_18595 PF00394 Multicopper oxidase LDH63_18595 PF10518 TAT (twin-arginine translocation) pathway signal sequence LDH63_18600 PF09691 Type II secretion system pilotin lipoprotein (PulS_OutS) LDH63_18605 PF17284 Spermidine synthase tetramerisation domain LDH63_18610 PF02675 S-adenosylmethionine decarboxylase LDH63_18615 PF00892 EamA-like transporter family LDH63_18620 PF06062 Uncharacterised protein family (UPF0231) LDH63_18625 PF00330 Aconitase family (aconitate hydratase) LDH63_18625 PF06434 Aconitate hydratase 2 N-terminus LDH63_18625 PF11791 Aconitate B N-terminal domain LDH63_18630 PF01797 Transposase IS200 like LDH63_18635 PF07992 Pyridine nucleotide-disulphide oxidoreductase LDH63_18635 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain LDH63_18640 PF02817 e3 binding domain LDH63_18640 PF00364 Biotin-requiring enzyme LDH63_18640 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) LDH63_18645 PF00456 Transketolase, thiamine diphosphate binding domain LDH63_18645 PF17831 Pyruvate dehydrogenase E1 component middle domain LDH63_18650 PF07729 FCD domain LDH63_18650 PF00392 Bacterial regulatory proteins, gntR family LDH63_18655 PF00324 Amino acid permease LDH63_18660 PF17113 Regulatory signalling modulator protein AmpE LDH63_18665 PF01510 N-acetylmuramoyl-L-alanine amidase LDH63_18670 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain LDH63_18670 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain LDH63_18675 PF07963 Prokaryotic N-terminal methylation motif LDH63_18680 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain LDH63_18680 PF00437 Type II/IV secretion system protein LDH63_18685 PF00482 Type II secretion system (T2SS), protein F LDH63_18690 PF00478 IMP dehydrogenase / GMP reductase domain LDH63_18700 PF01121 Dephospho-CoA kinase LDH63_18705 PF07072 Cell division protein LDH63_18710 PF03884 DNA gyrase inhibitor YacG LDH63_18720 PF02796 Helix-turn-helix domain of resolvase LDH63_18720 PF00665 Integrase core domain LDH63_18725 PF01695 IstB-like ATP binding protein LDH63_18730 PF08676 MutL C terminal dimerisation domain LDH63_18730 PF01119 DNA mismatch repair protein, C-terminal domain LDH63_18740 PF00589 Phage integrase family LDH63_18740 PF13356 Arm DNA-binding domain LDH63_18750 PF03739 Lipopolysaccharide export system permease LptF/LptG LDH63_18755 PF03739 Lipopolysaccharide export system permease LptF/LptG LDH63_18760 PF00883 Cytosol aminopeptidase family, catalytic domain LDH63_18760 PF02789 Cytosol aminopeptidase family, N-terminal domain LDH63_18765 PF04364 DNA polymerase III chi subunit, HolC LDH63_18770 PF08264 Anticodon-binding domain of tRNA LDH63_18770 PF00133 tRNA synthetases class I (I, L, M and V) LDH63_18770 PF10458 Valyl tRNA synthetase tRNA binding arm LDH63_18775 PF00583 Acetyltransferase (GNAT) family LDH63_18780 PF06877 Regulator of ribonuclease activity B LDH63_18785 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain LDH63_18785 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain LDH63_18790 PF04074 YhcH/YjgK/YiaL LDH63_18800 PF00528 Binding-protein-dependent transport system inner membrane component LDH63_18805 PF00528 Binding-protein-dependent transport system inner membrane component LDH63_18805 PF12911 N-terminal TM domain of oligopeptide transport permease C LDH63_18810 PF08352 Oligopeptide/dipeptide transporter, C-terminal region LDH63_18810 PF00005 ABC transporter LDH63_18815 PF00005 ABC transporter LDH63_18815 PF08352 Oligopeptide/dipeptide transporter, C-terminal region LDH63_18820 PF03477 ATP cone domain LDH63_18820 PF13597 Anaerobic ribonucleoside-triphosphate reductase LDH63_18830 PF07702 UTRA domain LDH63_18830 PF00392 Bacterial regulatory proteins, gntR family LDH63_18835 PF06754 Phosphonate metabolism protein PhnG LDH63_18840 PF05845 Bacterial phosphonate metabolism protein (PhnH) LDH63_18845 PF05861 Bacterial phosphonate metabolism protein (PhnI) LDH63_18850 PF06007 Phosphonate metabolism protein PhnJ LDH63_18855 PF00005 ABC transporter LDH63_18860 PF00005 ABC transporter LDH63_18865 PF07969 Amidohydrolase family LDH63_18875 PF12706 Beta-lactamase superfamily domain LDH63_18880 PF13460 NAD(P)H-binding LDH63_18895 PF00005 ABC transporter LDH63_18895 PF17912 MalK OB fold domain LDH63_18895 PF03459 TOBE domain LDH63_18900 PF00528 Binding-protein-dependent transport system inner membrane component LDH63_18905 PF00528 Binding-protein-dependent transport system inner membrane component LDH63_18910 PF13416 Bacterial extracellular solute-binding protein LDH63_18925 PF01541 GIY-YIG catalytic domain LDH63_18930 PF13508 Acetyltransferase (GNAT) domain LDH63_18935 PF02036 SCP-2 sterol transfer family LDH63_18940 PF01136 Peptidase family U32 LDH63_18945 PF01136 Peptidase family U32 LDH63_18950 PF08139 Prokaryotic membrane lipoprotein lipid attachment site LDH63_18950 PF02321 Outer membrane efflux protein LDH63_18955 PF00873 AcrB/AcrD/AcrF family LDH63_18960 PF00529 HlyD membrane-fusion protein of T1SS LDH63_18960 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LDH63_18965 PF00296 Luciferase-like monooxygenase LDH63_18975 PF01381 Helix-turn-helix LDH63_18985 PF03880 DbpA RNA binding domain LDH63_18985 PF00270 DEAD/DEAH box helicase LDH63_18985 PF00271 Helicase conserved C-terminal domain LDH63_18985 PF12343 Cold shock protein DEAD box A LDH63_18995 PF07719 Tetratricopeptide repeat LDH63_18995 PF13181 Tetratricopeptide repeat LDH63_19000 PF01138 3' exoribonuclease family, domain 1 LDH63_19000 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain LDH63_19000 PF00013 KH domain LDH63_19000 PF00575 S1 RNA binding domain LDH63_19000 PF03725 3' exoribonuclease family, domain 2 LDH63_19010 PF00312 Ribosomal protein S15 LDH63_19015 PF01509 TruB family pseudouridylate synthase (N terminal domain) LDH63_19015 PF09157 Pseudouridine synthase II TruB, C-terminal LDH63_19015 PF16198 tRNA pseudouridylate synthase B C-terminal domain LDH63_19020 PF02033 Ribosome-binding factor A LDH63_19025 PF08364 Bacterial translation initiation factor IF-2 associated region LDH63_19025 PF11987 Translation-initiation factor 2 LDH63_19025 PF03144 Elongation factor Tu domain 2 LDH63_19025 PF00009 Elongation factor Tu GTP binding domain LDH63_19025 PF04760 Translation initiation factor IF-2, N-terminal region LDH63_19030 PF08529 NusA N-terminal domain LDH63_19030 PF00575 S1 RNA binding domain LDH63_19030 PF13184 NusA-like KH domain LDH63_19035 PF02576 RimP N-terminal domain LDH63_19035 PF17384 RimP C-terminal SH3 domain LDH63_19050 PF03840 Preprotein translocase SecG subunit LDH63_19055 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I LDH63_19055 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II LDH63_19055 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III LDH63_19055 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain LDH63_19060 PF00809 Pterin binding enzyme LDH63_19065 PF17862 AAA+ lid domain LDH63_19065 PF00004 ATPase family associated with various cellular activities (AAA) LDH63_19065 PF01434 Peptidase family M41 LDH63_19065 PF06480 FtsH Extracellular LDH63_19070 PF01728 FtsJ-like methyltransferase LDH63_19075 PF01985 CRS1 / YhbY (CRM) domain LDH63_19080 PF01272 Transcription elongation factor, GreA/GreB, C-term LDH63_19080 PF03449 Transcription elongation factor, N-terminal LDH63_19085 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family LDH63_19090 PF00486 Transcriptional regulatory protein, C terminal LDH63_19090 PF00072 Response regulator receiver domain LDH63_19095 PF00672 HAMP domain LDH63_19095 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LDH63_19095 PF00512 His Kinase A (phospho-acceptor) domain LDH63_19100 PF01926 50S ribosome-binding GTPase LDH63_19100 PF01018 GTP1/OBG LDH63_19105 PF00892 EamA-like transporter family LDH63_19110 PF01016 Ribosomal L27 protein LDH63_19115 PF00829 Ribosomal prokaryotic L21 protein LDH63_19120 PF00348 Polyprenyl synthetase LDH63_19130 PF13693 Winged helix-turn-helix DNA-binding LDH63_19135 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain LDH63_19135 PF00056 lactate/malate dehydrogenase, NAD binding domain LDH63_19140 PF01316 Arginine repressor, DNA binding domain LDH63_19140 PF02863 Arginine repressor, C-terminal domain LDH63_19150 PF01225 Mur ligase family, catalytic domain LDH63_19150 PF02875 Mur ligase family, glutamate ligase domain LDH63_19150 PF08245 Mur ligase middle domain LDH63_19155 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain LDH63_19160 PF00719 Inorganic pyrophosphatase LDH63_19165 PF06094 Gamma-glutamyl cyclotransferase, AIG2-like LDH63_19170 PF04357 TamB, inner membrane protein subunit of TAM complex LDH63_19175 PF07244 Surface antigen variable number repeat LDH63_19175 PF01103 Surface antigen LDH63_19175 PF17243 POTRA domain TamA domain 1 LDH63_19180 PF01625 Peptide methionine sulfoxide reductase LDH63_19185 PF00571 CBS domain LDH63_19185 PF03471 Transporter associated domain LDH63_19185 PF01595 Cyclin M transmembrane N-terminal domain LDH63_19190 PF06526 Protein of unknown function (DUF1107) LDH63_19195 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) LDH63_19200 PF00459 Inositol monophosphatase family LDH63_19205 PF02872 5'-nucleotidase, C-terminal domain LDH63_19205 PF00149 Calcineurin-like phosphoesterase LDH63_19210 PF04405 Domain of Unknown function (DUF542) LDH63_19210 PF01814 Hemerythrin HHE cation binding domain LDH63_19215 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase LDH63_19215 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase LDH63_19220 PF04225 Opacity-associated protein A LysM-like domain LDH63_19220 PF08525 Opacity-associated protein A N-terminal motif LDH63_19230 PF01797 Transposase IS200 like LDH63_19235 PF03948 Ribosomal protein L9, C-terminal domain LDH63_19235 PF01281 Ribosomal protein L9, N-terminal domain LDH63_19240 PF01084 Ribosomal protein S18 LDH63_19245 PF00436 Single-strand binding protein family LDH63_19250 PF01250 Ribosomal protein S6 LDH63_19255 PF00326 Prolyl oligopeptidase family LDH63_19260 PF02796 Helix-turn-helix domain of resolvase LDH63_19260 PF00665 Integrase core domain LDH63_19265 PF01695 IstB-like ATP binding protein LDH63_19275 PF03466 LysR substrate binding domain LDH63_19275 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LDH63_19280 PF02678 Pirin LDH63_19280 PF17954 Quercetinase C-terminal cupin domain LDH63_19290 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases LDH63_19295 PF04348 LppC putative lipoprotein LDH63_19300 PF02021 Uncharacterised protein family UPF0102 LDH63_19305 PF13580 SIS domain LDH63_19310 PF04972 BON domain LDH63_19315 PF00912 Transglycosylase LDH63_19325 PF18415 Histidine kinase receptor ArcB trans-membrane domain LDH63_19325 PF00072 Response regulator receiver domain LDH63_19325 PF00989 PAS fold LDH63_19325 PF00512 His Kinase A (phospho-acceptor) domain LDH63_19325 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LDH63_19325 PF01627 Hpt domain LDH63_19330 PF04055 Radical SAM superfamily LDH63_19330 PF16199 Radical_SAM C-terminal domain LDH63_19335 PF01645 Conserved region in glutamate synthase LDH63_19335 PF00310 Glutamine amidotransferases class-II LDH63_19335 PF04898 Glutamate synthase central domain LDH63_19335 PF01493 GXGXG motif LDH63_19340 PF07992 Pyridine nucleotide-disulphide oxidoreductase LDH63_19340 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster LDH63_19350 PF04386 Stringent starvation protein B LDH63_19355 PF00043 Glutathione S-transferase, C-terminal domain LDH63_19355 PF02798 Glutathione S-transferase, N-terminal domain LDH63_19365 PF00380 Ribosomal protein S9/S16 LDH63_19370 PF00572 Ribosomal protein L13 LDH63_19375 PF03969 AFG1-like ATPase LDH63_19380 PF06295 Protein of unknown function (DUF1043) LDH63_19385 PF00595 PDZ domain LDH63_19385 PF13180 PDZ domain LDH63_19390 PF01797 Transposase IS200 like LDH63_19395 PF13180 PDZ domain LDH63_19400 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) LDH63_19405 PF01722 BolA-like protein LDH63_19410 PF13466 STAS domain LDH63_19415 PF05494 MlaC protein LDH63_19420 PF02470 MlaD protein LDH63_19425 PF02405 Permease MlaE LDH63_19430 PF00005 ABC transporter LDH63_19435 PF01699 Sodium/calcium exchanger protein LDH63_19440 PF00571 CBS domain LDH63_19440 PF01380 SIS domain LDH63_19450 PF06835 Lipopolysaccharide-assembly, LptC-related LDH63_19455 PF03968 OstA-like protein LDH63_19460 PF00005 ABC transporter LDH63_19460 PF12399 Branched-chain amino acid ATP-binding cassette transporter LDH63_19465 PF04552 Sigma-54, DNA binding domain LDH63_19465 PF04963 Sigma-54 factor, core binding domain LDH63_19465 PF00309 Sigma-54 factor, Activator interacting domain (AID) LDH63_19475 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 LDH63_19480 PF03668 P-loop ATPase protein family LDH63_19485 PF00381 PTS HPr component phosphorylation site LDH63_19490 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain LDH63_19490 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain LDH63_19495 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain LDH63_19495 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain LDH63_19500 PF01042 Endoribonuclease L-PSP LDH63_19510 PF00356 Bacterial regulatory proteins, lacI family LDH63_19515 PF02378 Phosphotransferase system, EIIC LDH63_19515 PF00367 phosphotransferase system, EIIB LDH63_19520 PF00128 Alpha amylase, catalytic domain LDH63_19520 PF11941 Domain of unknown function (DUF3459) LDH63_19525 PF01272 Transcription elongation factor, GreA/GreB, C-term LDH63_19525 PF14760 Rnk N-terminus LDH63_19530 PF07361 Cytochrome b562 LDH63_19540 PF01523 Putative modulator of DNA gyrase LDH63_19545 PF04751 Protein of unknown function (DUF615) LDH63_19550 PF01337 Barstar (barnase inhibitor) LDH63_19565 PF04632 Fusaric acid resistance protein family LDH63_19570 PF13533 Biotin-lipoyl like LDH63_19575 PF07869 Protein of unknown function (DUF1656) LDH63_19580 PF03466 LysR substrate binding domain LDH63_19580 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LDH63_19585 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LDH63_19585 PF03466 LysR substrate binding domain LDH63_19600 PF18413 Neuraminidase-like domain LDH63_19600 PF18276 Tc toxin complex TcA C-terminal TcB-binding domain LDH63_19605 PF03534 Salmonella virulence plasmid 65kDa B protein LDH63_19605 PF12255 Insecticide toxin TcdB middle/C-terminal region LDH63_19605 PF12256 Insecticide toxin TcdB middle/N-terminal region LDH63_19630 PF05785 Rho-activating domain of cytotoxic necrotizing factor LDH63_19630 PF18807 Tripartite Tc toxins repeat LDH63_19635 PF14431 YwqJ-like deaminase LDH63_19635 PF18807 Tripartite Tc toxins repeat LDH63_19640 PF01523 Putative modulator of DNA gyrase LDH63_19645 PF00795 Carbon-nitrogen hydrolase LDH63_19650 PF13502 AsmA-like C-terminal region LDH63_19650 PF13116 Protein of unknown function LDH63_19655 PF10150 Ribonuclease E/G family LDH63_19655 PF00575 S1 RNA binding domain LDH63_19660 PF02545 Maf-like protein LDH63_19665 PF04093 rod shape-determining protein MreD LDH63_19670 PF04085 rod shape-determining protein MreC LDH63_19680 PF00563 EAL domain LDH63_19680 PF17157 Gammaproteobacterial periplasmic sensor domain LDH63_19680 PF00990 Diguanylate cyclase, GGDEF domain LDH63_19685 PF08240 Alcohol dehydrogenase GroES-like domain LDH63_19685 PF00107 Zinc-binding dehydrogenase LDH63_19690 PF00174 Oxidoreductase molybdopterin binding domain LDH63_19695 PF01794 Ferric reductase like transmembrane component LDH63_19700 PF01220 Dehydroquinase class II LDH63_19705 PF00364 Biotin-requiring enzyme LDH63_19710 PF02785 Biotin carboxylase C-terminal domain LDH63_19710 PF00289 Biotin carboxylase, N-terminal domain LDH63_19710 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain LDH63_19720 PF06196 Protein of unknown function (DUF997) LDH63_19725 PF00474 Sodium:solute symporter family LDH63_19735 PF01207 Dihydrouridine synthase (Dus) LDH63_19740 PF02954 Bacterial regulatory protein, Fis family LDH63_19765 PF07690 Major Facilitator Superfamily LDH63_19770 PF02627 Carboxymuconolactone decarboxylase family LDH63_19775 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase LDH63_19775 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase LDH63_19780 PF00753 Metallo-beta-lactamase superfamily LDH63_19785 PF05433 Glycine zipper 2TM domain LDH63_19790 PF00313 'Cold-shock' DNA-binding domain LDH63_19795 PF00313 'Cold-shock' DNA-binding domain LDH63_19815 PF02798 Glutathione S-transferase, N-terminal domain LDH63_19820 PF00571 CBS domain LDH63_19820 PF01380 SIS domain LDH63_19825 PF02782 FGGY family of carbohydrate kinases, C-terminal domain LDH63_19825 PF00370 FGGY family of carbohydrate kinases, N-terminal domain LDH63_19835 PF02653 Branched-chain amino acid transport system / permease component LDH63_19840 PF00005 ABC transporter LDH63_19850 PF03279 Bacterial lipid A biosynthesis acyltransferase LDH63_19860 PF00999 Sodium/hydrogen exchanger family LDH63_19865 PF00860 Permease family LDH63_19870 PF04221 RelB antitoxin LDH63_19885 PF00005 ABC transporter LDH63_19890 PF00528 Binding-protein-dependent transport system inner membrane component LDH63_19895 PF00296 Luciferase-like monooxygenase LDH63_19900 PF09084 NMT1/THI5 like LDH63_19905 PF03358 NADPH-dependent FMN reductase LDH63_19910 PF01791 DeoC/LacD family aldolase LDH63_19915 PF00294 pfkB family carbohydrate kinase LDH63_19920 PF05025 RbsD / FucU transport protein family LDH63_19925 PF02311 AraC-like ligand binding domain LDH63_19925 PF12833 Helix-turn-helix domain LDH63_19930 PF02894 Oxidoreductase family, C-terminal alpha/beta domain LDH63_19930 PF01408 Oxidoreductase family, NAD-binding Rossmann fold LDH63_19950 PF03527 RHS protein LDH63_19950 PF05593 RHS Repeat LDH63_19960 PF04717 Type VI secretion system, phage-baseplate injector LDH63_19990 PF05593 RHS Repeat LDH63_19990 PF03527 RHS protein LDH63_20005 PF04717 Type VI secretion system, phage-baseplate injector LDH63_20040 PF00004 ATPase family associated with various cellular activities (AAA) LDH63_20040 PF07724 AAA domain (Cdc48 subfamily) LDH63_20040 PF17871 AAA lid domain LDH63_20040 PF10431 C-terminal, D2-small domain, of ClpB protein LDH63_20050 PF05936 Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE LDH63_20070 PF05947 Type VI secretion system, TssF LDH63_20080 PF02219 Methylenetetrahydrofolate reductase LDH63_20085 PF00696 Amino acid kinase family LDH63_20085 PF00742 Homoserine dehydrogenase LDH63_20085 PF03447 Homoserine dehydrogenase, NAD binding domain LDH63_20095 PF01340 Met Apo-repressor, MetJ LDH63_20100 PF05360 yiaA/B two helix domain LDH63_20105 PF01197 Ribosomal protein L31 LDH63_20110 PF17764 3′ DNA-binding domain (3′BD) LDH63_20110 PF00270 DEAD/DEAH box helicase LDH63_20110 PF18319 PriA DNA helicase Cys-rich region (CRR) domain LDH63_20110 PF18074 Primosomal protein N C-terminal domain LDH63_20110 PF00271 Helicase conserved C-terminal domain LDH63_20120 PF00356 Bacterial regulatory proteins, lacI family LDH63_20125 PF05036 Sporulation related domain LDH63_20130 PF00227 Proteasome subunit LDH63_20135 PF10431 C-terminal, D2-small domain, of ClpB protein LDH63_20135 PF00004 ATPase family associated with various cellular activities (AAA) LDH63_20135 PF07724 AAA domain (Cdc48 subfamily) LDH63_20140 PF01040 UbiA prenyltransferase family LDH63_20145 PF03737 Aldolase/RraA LDH63_20160 PF00529 HlyD membrane-fusion protein of T1SS LDH63_20160 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LDH63_20165 PF00664 ABC transporter transmembrane region LDH63_20165 PF03412 Peptidase C39 family LDH63_20165 PF00005 ABC transporter LDH63_20175 PF06005 Cell division protein ZapB LDH63_20180 PF00230 Major intrinsic protein LDH63_20185 PF00370 FGGY family of carbohydrate kinases, N-terminal domain LDH63_20185 PF02782 FGGY family of carbohydrate kinases, C-terminal domain LDH63_20190 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded LDH63_20195 PF00175 Oxidoreductase NAD-binding domain LDH63_20195 PF00970 Oxidoreductase FAD-binding domain LDH63_20200 PF05656 Protein of unknown function (DUF805) LDH63_20205 PF07305 Protein of unknown function (DUF1454) LDH63_20210 PF00121 Triosephosphate isomerase LDH63_20215 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LDH63_20215 PF03466 LysR substrate binding domain LDH63_20220 PF02585 GlcNAc-PI de-N-acetylase LDH63_20225 PF03737 Aldolase/RraA LDH63_20230 PF00939 Sodium:sulfate symporter transmembrane region LDH63_20245 PF00365 Phosphofructokinase LDH63_20250 PF01545 Cation efflux family LDH63_20250 PF16916 Dimerisation domain of Zinc Transporter LDH63_20260 PF04754 Putative transposase, YhgA-like LDH63_20275 PF07813 LTXXQ motif family protein LDH63_20280 PF00072 Response regulator receiver domain LDH63_20280 PF00486 Transcriptional regulatory protein, C terminal LDH63_20285 PF00672 HAMP domain LDH63_20285 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LDH63_20285 PF00512 His Kinase A (phospho-acceptor) domain LDH63_20285 PF16527 Two-component sensor protein CpxA, periplasmic domain LDH63_20290 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain LDH63_20290 PF12833 Helix-turn-helix domain LDH63_20290 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain LDH63_20290 PF02805 Metal binding domain of Ada LDH63_20295 PF00588 SpoU rRNA Methylase family LDH63_20300 PF00132 Bacterial transferase hexapeptide (six repeats) LDH63_20300 PF06426 Serine acetyltransferase, N-terminal LDH63_20305 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus LDH63_20305 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus LDH63_20310 PF02556 Preprotein translocase subunit SecB LDH63_20315 PF00462 Glutaredoxin LDH63_20320 PF00581 Rhodanese-like domain LDH63_20325 PF06415 BPG-independent PGAM N-terminus (iPGM_N) LDH63_20325 PF01676 Metalloenzyme superfamily LDH63_20330 PF01551 Peptidase family M23 LDH63_20340 PF08240 Alcohol dehydrogenase GroES-like domain LDH63_20340 PF00107 Zinc-binding dehydrogenase LDH63_20345 PF00155 Aminotransferase class I and II LDH63_20350 PF01370 NAD dependent epimerase/dehydratase family LDH63_20355 PF01075 Glycosyltransferase family 9 (heptosyltransferase) LDH63_20360 PF01075 Glycosyltransferase family 9 (heptosyltransferase) LDH63_20365 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) LDH63_20370 PF00535 Glycosyl transferase family 2 LDH63_20375 PF01467 Cytidylyltransferase-like LDH63_20380 PF06827 Zinc finger found in FPG and IleRS LDH63_20380 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain LDH63_20380 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain LDH63_20385 PF00471 Ribosomal protein L33 LDH63_20390 PF00830 Ribosomal L28 family LDH63_20395 PF04002 RadC-like JAB domain LDH63_20400 PF04127 DNA / pantothenate metabolism flavoprotein LDH63_20400 PF02441 Flavoprotein LDH63_20405 PF00692 dUTPase LDH63_20410 PF00440 Bacterial regulatory proteins, tetR family LDH63_20415 PF00156 Phosphoribosyl transferase domain LDH63_20420 PF01138 3' exoribonuclease family, domain 1 LDH63_20420 PF03725 3' exoribonuclease family, domain 2 LDH63_20425 PF03755 YicC-like family, N-terminal region LDH63_20425 PF08340 Domain of unknown function (DUF1732) LDH63_20430 PF03458 UPF0126 domain LDH63_20435 PF01653 NAD-dependent DNA ligase adenylation domain LDH63_20435 PF03120 NAD-dependent DNA ligase OB-fold domain LDH63_20440 PF00625 Guanylate kinase LDH63_20445 PF01192 RNA polymerase Rpb6 LDH63_20450 PF13291 ACT domain LDH63_20450 PF04607 Region found in RelA / SpoT proteins LDH63_20450 PF02824 TGS domain LDH63_20455 PF12105 SpoU, rRNA methylase, C-terminal LDH63_20455 PF00588 SpoU rRNA Methylase family LDH63_20460 PF00270 DEAD/DEAH box helicase LDH63_20460 PF17191 RecG wedge domain LDH63_20460 PF00271 Helicase conserved C-terminal domain LDH63_20470 PF03616 Sodium/glutamate symporter LDH63_20475 PF00860 Permease family LDH63_20480 PF05170 AsmA family LDH63_20485 PF00583 Acetyltransferase (GNAT) family LDH63_20485 PF09500 Putative thioesterase (yiiD_Cterm) LDH63_20490 PF02796 Helix-turn-helix domain of resolvase LDH63_20490 PF00665 Integrase core domain LDH63_20495 PF01695 IstB-like ATP binding protein LDH63_20500 PF02580 D-Tyr-tRNA(Tyr) deacylase LDH63_20505 PF03631 Virulence factor BrkB LDH63_20510 PF13419 Haloacid dehalogenase-like hydrolase LDH63_20515 PF03144 Elongation factor Tu domain 2 LDH63_20515 PF00009 Elongation factor Tu GTP binding domain LDH63_20515 PF00679 Elongation factor G C-terminus LDH63_20520 PF00120 Glutamine synthetase, catalytic domain LDH63_20520 PF03951 Glutamine synthetase, beta-Grasp domain LDH63_20525 PF01797 Transposase IS200 like LDH63_20530 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LDH63_20530 PF00512 His Kinase A (phospho-acceptor) domain LDH63_20530 PF00989 PAS fold LDH63_20535 PF02954 Bacterial regulatory protein, Fis family LDH63_20535 PF00072 Response regulator receiver domain LDH63_20535 PF00158 Sigma-54 interaction domain LDH63_20540 PF04055 Radical SAM superfamily LDH63_20540 PF06969 HemN C-terminal domain LDH63_20545 PF04220 Der GTPase activator (YihI) LDH63_20550 PF01926 50S ribosome-binding GTPase LDH63_20555 PF01797 Transposase IS200 like LDH63_20560 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain LDH63_20560 PF00476 DNA polymerase family A LDH63_20560 PF01612 3'-5' exonuclease LDH63_20560 PF01367 5'-3' exonuclease, C-terminal SAM fold LDH63_20565 PF01323 DSBA-like thioredoxin domain LDH63_20570 PF01636 Phosphotransferase enzyme family LDH63_20575 PF06288 Protein of unknown function (DUF1040) LDH63_20580 PF12804 MobA-like NTP transferase domain LDH63_20585 PF03205 Molybdopterin guanine dinucleotide synthesis protein B LDH63_20590 PF00872 Transposase, Mutator family LDH63_20615 PF00392 Bacterial regulatory proteins, gntR family LDH63_20615 PF07729 FCD domain LDH63_20620 PF07690 Major Facilitator Superfamily LDH63_20635 PF00294 pfkB family carbohydrate kinase LDH63_20640 PF05025 RbsD / FucU transport protein family LDH63_20645 PF02705 K+ potassium transporter LDH63_20650 PF17868 AAA lid domain LDH63_20650 PF12592 Protein of unknown function (DUF3763) LDH63_20650 PF07728 AAA domain (dynein-related subfamily) LDH63_20655 PF05762 VWA domain containing CoxE-like protein LDH63_20660 PF03590 Aspartate-ammonia ligase LDH63_20665 PF01037 Lrp/AsnC ligand binding domain LDH63_20670 PF00258 Flavodoxin LDH63_20675 PF13932 GidA associated domain LDH63_20675 PF01134 Glucose inhibited division protein A LDH63_20680 PF02527 rRNA small subunit methyltransferase G LDH63_20685 PF03899 ATP synthase I chain LDH63_20690 PF00119 ATP synthase A chain LDH63_20695 PF00137 ATP synthase subunit C LDH63_20700 PF00430 ATP synthase B/B' CF(0) LDH63_20705 PF00213 ATP synthase delta (OSCP) subunit LDH63_20710 PF00306 ATP synthase alpha/beta chain, C terminal domain LDH63_20710 PF02874 ATP synthase alpha/beta family, beta-barrel domain LDH63_20710 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain LDH63_20715 PF00231 ATP synthase LDH63_20720 PF02874 ATP synthase alpha/beta family, beta-barrel domain LDH63_20720 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain LDH63_20725 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain LDH63_20725 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain LDH63_20730 PF00132 Bacterial transferase hexapeptide (six repeats) LDH63_20730 PF12804 MobA-like NTP transferase domain LDH63_20735 PF01380 SIS domain LDH63_20740 PF12849 PBP superfamily domain LDH63_20745 PF00528 Binding-protein-dependent transport system inner membrane component LDH63_20750 PF00528 Binding-protein-dependent transport system inner membrane component LDH63_20755 PF00005 ABC transporter LDH63_20760 PF01895 PhoU domain LDH63_20770 PF00497 Bacterial extracellular solute-binding proteins, family 3 LDH63_20775 PF00528 Binding-protein-dependent transport system inner membrane component LDH63_20780 PF00528 Binding-protein-dependent transport system inner membrane component LDH63_20785 PF13419 Haloacid dehalogenase-like hydrolase LDH63_20795 PF00860 Permease family LDH63_20820 PF07055 Enoyl reductase FAD binding domain LDH63_20820 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase LDH63_20820 PF12241 Trans-2-enoyl-CoA reductase catalytic region LDH63_20825 PF01926 50S ribosome-binding GTPase LDH63_20825 PF12631 MnmE helical domain LDH63_20825 PF10396 GTP-binding protein TrmE N-terminus LDH63_20830 PF14849 YidC periplasmic domain LDH63_20830 PF02096 60Kd inner membrane protein LDH63_20835 PF01809 Putative membrane protein insertion efficiency factor LDH63_20840 PF00825 Ribonuclease P LDH63_20845 PF00468 Ribosomal protein L34 LDH63_20920 PF00270 DEAD/DEAH box helicase LDH63_20920 PF17191 RecG wedge domain LDH63_20920 PF00271 Helicase conserved C-terminal domain LDH63_20925 PF02195 ParB-like nuclease domain LDH63_20925 PF17762 HTH domain found in ParB protein LDH63_20930 PF02195 ParB-like nuclease domain LDH63_20930 PF17762 HTH domain found in ParB protein LDH63_20935 PF03412 Peptidase C39 family LDH63_20935 PF00005 ABC transporter LDH63_20935 PF00664 ABC transporter transmembrane region LDH63_21060 PF03335 Phage tail fibre repeat LDH63_21060 PF08400 Prophage tail fibre N-terminal LDH63_21060 PF07484 Phage Tail Collar Domain LDH63_21060 PF08400 Prophage tail fibre N-terminal LDH63_21060 PF03335 Phage tail fibre repeat LDH63_21060 PF07484 Phage Tail Collar Domain LDH63_21065 PF02413 Caudovirales tail fibre assembly protein, lambda gpK LDH63_21070 PF01695 IstB-like ATP binding protein LDH63_21075 PF02796 Helix-turn-helix domain of resolvase LDH63_21075 PF00665 Integrase core domain LDH63_21100 PF00872 Transposase, Mutator family LDH63_21110 PF02371 Transposase IS116/IS110/IS902 family LDH63_21110 PF01548 Transposase LDH63_21135 PF13091 PLD-like domain LDH63_21145 PF04754 Putative transposase, YhgA-like LDH63_21150 PF02796 Helix-turn-helix domain of resolvase LDH63_21150 PF00239 Resolvase, N terminal domain LDH63_21165 PF18607 ParA helix turn helix domain LDH63_21165 PF13614 AAA domain LDH63_21170 PF02195 ParB-like nuclease domain LDH63_21170 PF08775 ParB family LDH63_21190 PF01555 DNA methylase LDH63_21200 PF07128 Protein of unknown function (DUF1380) LDH63_21215 PF06006 Bacterial protein of unknown function (DUF905) LDH63_21220 PF02195 ParB-like nuclease domain LDH63_21225 PF00665 Integrase core domain LDH63_21225 PF02796 Helix-turn-helix domain of resolvase LDH63_21230 PF01695 IstB-like ATP binding protein LDH63_21260 PF12833 Helix-turn-helix domain LDH63_21260 PF06445 GyrI-like small molecule binding domain LDH63_21265 PF02753 Pili assembly chaperone PapD, C-terminal domain LDH63_21265 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain LDH63_21270 PF00577 Outer membrane usher protein LDH63_21270 PF13954 PapC N-terminal domain LDH63_21270 PF13953 PapC C-terminal domain LDH63_21275 PF09255 Caf1 Capsule antigen LDH63_21295 PF06213 Cobalamin biosynthesis protein CobT LDH63_21295 PF11775 Cobalamin biosynthesis protein CobT VWA domain LDH63_21305 PF07733 Bacterial DNA polymerase III alpha NTPase domain LDH63_21305 PF14579 Helix-hairpin-helix motif LDH63_21305 PF02811 PHP domain LDH63_21305 PF17657 Bacterial DNA polymerase III alpha subunit finger domain LDH63_21335 PF01367 5'-3' exonuclease, C-terminal SAM fold LDH63_21335 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain LDH63_21345 PF00154 recA bacterial DNA recombination protein LDH63_21390 PF01051 Initiator Replication protein LDH63_21415 PF09392 Type III secretion needle MxiH, YscF, SsaG, EprI, PscF, EscF LDH63_21425 PF09025 YopR, type III needle-polymerisation regulator LDH63_21430 PF17001 Type III secretion basal body protein I, YscI, HrpB, PscI LDH63_21435 PF01514 Secretory protein of YscJ/FliF family LDH63_21440 PF06578 YOP proteins translocation protein K (YscK) LDH63_21445 PF02108 Flagellar assembly protein FliH LDH63_21450 PF09013 YopH, N-terminal LDH63_21465 PF09013 YopH, N-terminal LDH63_21465 PF00102 Protein-tyrosine phosphatase LDH63_21485 PF03421 YopJ Serine/Threonine acetyltransferase LDH63_21490 PF09632 Rac1-binding domain LDH63_21490 PF00069 Protein kinase domain LDH63_21515 PF02387 IncFII RepA protein family LDH63_21530 PF10723 Replication regulatory protein RepB LDH63_21555 PF18272 single-stranded DNA binding TraI N-terminal subdomain LDH63_21555 PF07057 DNA helicase TraI LDH63_21555 PF18340 DNA relaxase TraI 2B/2B-like domain LDH63_21555 PF08751 TrwC relaxase LDH63_21565 PF00892 EamA-like transporter family LDH63_21570 PF05658 Head domain of trimeric autotransporter adhesin LDH63_21570 PF05662 Coiled stalk of trimeric autotransporter adhesin LDH63_21570 PF03895 YadA-like membrane anchor domain LDH63_21575 PF03895 YadA-like membrane anchor domain LDH63_21575 PF05658 Head domain of trimeric autotransporter adhesin LDH63_21575 PF05662 Coiled stalk of trimeric autotransporter adhesin LDH63_21585 PF01526 Tn3 transposase DDE domain LDH63_21585 PF13700 Domain of unknown function (DUF4158) LDH63_21590 PF02796 Helix-turn-helix domain of resolvase LDH63_21590 PF00239 Resolvase, N terminal domain LDH63_21620 PF00665 Integrase core domain LDH63_21630 PF05932 Tir chaperone protein (CesT) family LDH63_21635 PF09020 YopE, N terminal LDH63_21635 PF03545 Yersinia virulence determinant (YopE) LDH63_21645 PF03693 Bacterial antitoxin of ParD toxin-antitoxin type II system and RHH LDH63_21665 PF18090 Centromere-binding protein HTH domain LDH63_21665 PF02195 ParB-like nuclease domain LDH63_21670 PF13614 AAA domain LDH63_21685 PF05818 Enterobacterial TraT complement resistance protein LDH63_21690 PF05818 Enterobacterial TraT complement resistance protein LDH63_21705 PF03543 Yersinia/Haemophilus virulence surface antigen LDH63_21710 PF05932 Tir chaperone protein (CesT) family LDH63_21740 PF12468 Type III secretion system leucine rich repeat protein LDH63_21755 PF05844 YopD protein LDH63_21760 PF04888 Secretion system effector C (SseC) like family LDH63_21765 PF07720 Tetratricopeptide repeat LDH63_21770 PF04792 V antigen (LcrV) protein LDH63_21775 PF07216 LcrG protein LDH63_21780 PF09621 Type III secretion system regulator (LcrR) LDH63_21785 PF00771 FHIPEP family LDH63_21795 PF09474 Type III secretion system YscX (type_III_YscX) LDH63_21805 PF09059 TyeA LDH63_21810 PF07201 HrpJ-like domain LDH63_21815 PF18269 T3SS EscN ATPase C-terminal domain LDH63_21815 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain LDH63_21815 PF02874 ATP synthase alpha/beta family, beta-barrel domain LDH63_21820 PF07321 Type III secretion protein YscO LDH63_21825 PF02120 Flagellar hook-length control protein FliK LDH63_21830 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term LDH63_21835 PF00813 FliP family LDH63_21840 PF01313 Bacterial export proteins, family 3 LDH63_21845 PF01311 Bacterial export proteins, family 1 LDH63_21850 PF01312 FlhB HrpN YscU SpaS Family LDH63_21855 PF09619 Type III secretion system lipoprotein chaperone (YscW) LDH63_21860 PF12833 Helix-turn-helix domain LDH63_21860 PF02311 AraC-like ligand binding domain LDH63_21865 PF17551 Family of unknown function (DUF5463) LDH63_21870 PF05932 Tir chaperone protein (CesT) family LDH63_21895 PF01815 Rop protein LDH63_21900 PF01695 IstB-like ATP binding protein LDH63_21905 PF02796 Helix-turn-helix domain of resolvase LDH63_21905 PF00665 Integrase core domain LDH63_21910 PF05973 Phage derived protein Gp49-like (DUF891) LDH63_21920 PF01278 Omptin family LDH63_21940 PF01815 Rop protein LDH63_21945 PF01695 IstB-like ATP binding protein LDH63_21950 PF00665 Integrase core domain LDH63_21950 PF02796 Helix-turn-helix domain of resolvase