locus-tag class description CH57_1 PF00005 ABC transporter CH57_1 PF08402 TOBE domain CH57_10 PF01979 Amidohydrolase family CH57_100 PF00005 ABC transporter CH57_1009 PF13406 Transglycosylase SLT domain CH57_101 PF01297 Zinc-uptake complex component A periplasmic CH57_1011 PF00528 Binding-protein-dependent transport system inner membrane component CH57_1012 PF00005 ABC transporter CH57_1014 PF05638 Type VI secretion system effector, Hcp CH57_1016 PF00384 Molybdopterin oxidoreductase CH57_1016 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CH57_1016 PF01568 Molydopterin dinucleotide binding domain CH57_1017 PF12800 4Fe-4S binding domain CH57_1017 PF13247 4Fe-4S dicluster domain CH57_1018 PF04976 DMSO reductase anchor subunit (DmsC) CH57_1019 PF02613 Nitrate reductase delta subunit CH57_102 PF08525 Opacity-associated protein A N-terminal motif CH57_102 PF01551 Peptidase family M23 CH57_102 PF01476 LysM domain CH57_1021 PF05643 Putative bacterial lipoprotein (DUF799) CH57_1023 PF03783 Curli production assembly/transport component CsgG CH57_1025 PF01292 Prokaryotic cytochrome b561 CH57_1026 PF00155 Aminotransferase class I and II CH57_1027 PF07350 Protein of unknown function (DUF1479) CH57_1028 PF02685 Glucokinase CH57_103 PF03279 Bacterial lipid A biosynthesis acyltransferase CH57_1030 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH57_1030 PF03466 LysR substrate binding domain CH57_1031 PF00248 Aldo/keto reductase family CH57_1033 PF01566 Natural resistance-associated macrophage protein CH57_1034 PF07670 Nucleoside recognition CH57_1034 PF07662 Na+ dependent nucleoside transporter C-terminus CH57_1034 PF01773 Na+ dependent nucleoside transporter N-terminus CH57_1039 PF00749 tRNA synthetases class I (E and Q), catalytic domain CH57_104 PF00224 Pyruvate kinase, barrel domain CH57_104 PF02887 Pyruvate kinase, alpha/beta domain CH57_1040 PF01797 Transposase IS200 like CH57_1045 PF12843 Putative quorum-sensing-regulated virulence factor CH57_1046 PF03119 NAD-dependent DNA ligase C4 zinc finger domain CH57_1046 PF01653 NAD-dependent DNA ligase adenylation domain CH57_1046 PF00533 BRCA1 C Terminus (BRCT) domain CH57_1046 PF12826 Helix-hairpin-helix motif CH57_1046 PF03120 NAD-dependent DNA ligase OB-fold domain CH57_1047 PF04354 ZipA, C-terminal FtsZ-binding domain CH57_1049 PF00291 Pyridoxal-phosphate dependent enzyme CH57_105 PF01418 Helix-turn-helix domain, rpiR family CH57_105 PF01380 SIS domain CH57_1050 PF00381 PTS HPr component phosphorylation site CH57_1051 PF02896 PEP-utilising enzyme, TIM barrel domain CH57_1051 PF00391 PEP-utilising enzyme, mobile domain CH57_1051 PF05524 PEP-utilising enzyme, N-terminal CH57_1052 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 CH57_1053 PF01797 Transposase IS200 like CH57_1055 PF16527 Two-component sensor protein CpxA, periplasmic domain CH57_1055 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH57_1055 PF00512 His Kinase A (phospho-acceptor) domain CH57_1055 PF00672 HAMP domain CH57_1056 PF00072 Response regulator receiver domain CH57_1056 PF00486 Transcriptional regulatory protein, C terminal CH57_1057 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CH57_1058 PF12704 MacB-like periplasmic core domain CH57_1058 PF02687 FtsX-like permease family CH57_1058 PF00005 ABC transporter CH57_1059 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CH57_1059 PF07992 Pyridine nucleotide-disulphide oxidoreductase CH57_106 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain CH57_106 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain CH57_1060 PF00474 Sodium:solute symporter family CH57_1062 PF05195 Aminopeptidase P, N-terminal domain CH57_1062 PF00557 Metallopeptidase family M24 CH57_1064 PF00155 Aminotransferase class I and II CH57_1066 PF00672 HAMP domain CH57_1066 PF00512 His Kinase A (phospho-acceptor) domain CH57_1066 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH57_1067 PF00072 Response regulator receiver domain CH57_1067 PF00486 Transcriptional regulatory protein, C terminal CH57_1069 PF00291 Pyridoxal-phosphate dependent enzyme CH57_1070 PF00005 ABC transporter CH57_1071 PF00528 Binding-protein-dependent transport system inner membrane component CH57_1072 PF00528 Binding-protein-dependent transport system inner membrane component CH57_1074 PF07690 Major Facilitator Superfamily CH57_1075 PF01418 Helix-turn-helix domain, rpiR family CH57_1075 PF01380 SIS domain CH57_1076 PF04074 YhcH/YjgK/YiaL CH57_1077 PF00480 ROK family CH57_1078 PF12468 Type III secretion system leucine rich repeat protein CH57_1079 PF04131 Putative N-acetylmannosamine-6-phosphate epimerase CH57_108 PF01081 KDPG and KHG aldolase CH57_1080 PF00701 Dihydrodipicolinate synthetase family CH57_1081 PF04261 Dyp-type peroxidase family CH57_1082 PF06572 Protein of unknown function (DUF1131) CH57_1083 PF04076 Bacterial OB fold (BOF) protein CH57_1084 PF03212 Pertactin CH57_1084 PF13018 Extended Signal Peptide of Type V secretion system CH57_1084 PF03797 Autotransporter beta-domain CH57_1084 PF16168 Adhesin of bacterial autotransporter system, probable stalk CH57_1087 PF00583 Acetyltransferase (GNAT) family CH57_1088 PF01218 Coproporphyrinogen III oxidase CH57_1089 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 CH57_109 PF00893 Small Multidrug Resistance protein CH57_1090 PF01515 Phosphate acetyl/butaryl transferase CH57_1090 PF03949 Malic enzyme, NAD binding domain CH57_1090 PF00390 Malic enzyme, N-terminal domain CH57_1091 PF00293 NUDIX domain CH57_1092 PF03264 NapC/NirT cytochrome c family, N-terminal region CH57_1093 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) CH57_1094 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CH57_1094 PF01568 Molydopterin dinucleotide binding domain CH57_1094 PF00384 Molybdopterin oxidoreductase CH57_1094 PF10518 TAT (twin-arginine translocation) pathway signal sequence CH57_1095 PF03927 NapD protein CH57_1096 PF13187 4Fe-4S dicluster domain CH57_1096 PF12800 4Fe-4S binding domain CH57_1096 PF00037 4Fe-4S binding domain CH57_1097 PF00072 Response regulator receiver domain CH57_1097 PF00196 Bacterial regulatory proteins, luxR family CH57_1099 PF00873 AcrB/AcrD/AcrF family CH57_11 PF05962 HutD CH57_110 PF00893 Small Multidrug Resistance protein CH57_1101 PF04307 LexA-binding, inner membrane-associated putative hydrolase CH57_1102 PF04055 Radical SAM superfamily CH57_1102 PF13186 Iron-sulfur cluster-binding domain CH57_1103 PF00884 Sulfatase CH57_1104 PF00005 ABC transporter CH57_1104 PF08402 TOBE domain CH57_1105 PF00528 Binding-protein-dependent transport system inner membrane component CH57_1108 PF03960 ArsC family CH57_1109 PF07687 Peptidase dimerisation domain CH57_1109 PF01546 Peptidase family M20/M25/M40 CH57_111 PF01042 Endoribonuclease L-PSP CH57_1110 PF02557 D-alanyl-D-alanine carboxypeptidase CH57_1111 PF13980 Uncharacterised protein family (UPF0370) CH57_1112 PF08351 Domain of unknown function (DUF1726) CH57_1112 PF13718 GNAT acetyltransferase 2 CH57_1112 PF05127 Helicase CH57_1112 PF17176 tRNA-binding domain CH57_1113 PF04284 Protein of unknown function (DUF441) CH57_1114 PF04228 Putative neutral zinc metallopeptidase CH57_1115 PF01259 SAICAR synthetase CH57_1116 PF01797 Transposase IS200 like CH57_1117 PF06804 NlpB/DapX lipoprotein CH57_1118 PF00701 Dihydrodipicolinate synthetase family CH57_1119 PF01842 ACT domain CH57_112 PF13307 Helicase C-terminal domain CH57_112 PF04851 Type III restriction enzyme, res subunit CH57_1120 PF00578 AhpC/TSA family CH57_1123 PF01594 AI-2E family transporter CH57_1124 PF01435 Peptidase family M48 CH57_1124 PF07720 Tetratricopeptide repeat CH57_1125 PF03960 ArsC family CH57_1126 PF00308 Bacterial dnaA protein CH57_1127 PF01797 Transposase IS200 like CH57_1129 PF01406 tRNA synthetases class I (C) catalytic domain CH57_1129 PF09190 DALR domain CH57_113 PF00814 Glycoprotease family CH57_1130 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD CH57_1131 PF00149 Calcineurin-like phosphoesterase CH57_1132 PF00731 AIR carboxylase CH57_1133 PF02222 ATP-grasp domain CH57_1133 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain CH57_1135 PF00005 ABC transporter CH57_1136 PF13472 GDSL-like Lipase/Acylhydrolase family CH57_1137 PF00106 short chain dehydrogenase CH57_1138 PF00085 Thioredoxin CH57_1139 PF01145 SPFH domain / Band 7 family CH57_1139 PF16200 C-terminal region of band_7 CH57_114 PF03843 Outer membrane lipoprotein Slp family CH57_1140 PF01957 NfeD-like C-terminal, partner-binding CH57_1141 PF13411 MerR HTH family regulatory protein CH57_1142 PF00403 Heavy-metal-associated domain CH57_1143 PF01963 TraB family CH57_1144 PF04073 Aminoacyl-tRNA editing domain CH57_1147 PF02872 5'-nucleotidase, C-terminal domain CH57_1147 PF00149 Calcineurin-like phosphoesterase CH57_1148 PF00149 Calcineurin-like phosphoesterase CH57_1148 PF02872 5'-nucleotidase, C-terminal domain CH57_1149 PF02872 5'-nucleotidase, C-terminal domain CH57_1149 PF00149 Calcineurin-like phosphoesterase CH57_115 PF00501 AMP-binding enzyme CH57_115 PF13193 AMP-binding enzyme C-terminal domain CH57_1150 PF07690 Major Facilitator Superfamily CH57_1151 PF00999 Sodium/hydrogen exchanger family CH57_1151 PF02254 TrkA-N domain CH57_1152 PF00294 pfkB family carbohydrate kinase CH57_1153 PF02706 Chain length determinant protein CH57_1154 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III CH57_1154 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I CH57_1154 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain CH57_1154 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II CH57_1155 PF00535 Glycosyl transferase family 2 CH57_1156 PF00483 Nucleotidyl transferase CH57_1156 PF01050 Mannose-6-phosphate isomerase CH57_1159 PF16363 GDP-mannose 4,6 dehydratase CH57_116 PF01612 3'-5' exonuclease CH57_116 PF00570 HRDC domain CH57_1160 PF16363 GDP-mannose 4,6 dehydratase CH57_1161 PF13439 Glycosyltransferase Family 4 CH57_1161 PF00534 Glycosyl transferases group 1 CH57_117 PF03776 Septum formation topological specificity factor MinE CH57_1170 PF01370 NAD dependent epimerase/dehydratase family CH57_1171 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family CH57_1172 PF16363 GDP-mannose 4,6 dehydratase CH57_1173 PF00483 Nucleotidyl transferase CH57_1174 PF00970 Oxidoreductase FAD-binding domain CH57_1174 PF00111 2Fe-2S iron-sulfur cluster binding domain CH57_1174 PF00175 Oxidoreductase NAD-binding domain CH57_1175 PF00762 Ferrochelatase CH57_1176 PF05191 Adenylate kinase, active site lid CH57_1177 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH57_1177 PF00183 Hsp90 protein CH57_1178 PF02132 RecR protein CH57_1178 PF13662 Toprim domain CH57_1179 PF02575 YbaB/EbfC DNA-binding family CH57_118 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain CH57_1180 PF12170 DNA polymerase III tau subunit V interacting with alpha CH57_1180 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding CH57_1180 PF12169 DNA polymerase III subunits gamma and tau domain III CH57_1181 PF00156 Phosphoribosyl transferase domain CH57_1182 PF01695 IstB-like ATP binding protein CH57_1183 PF00665 Integrase core domain CH57_1183 PF02796 Helix-turn-helix domain of resolvase CH57_1184 PF04304 Protein of unknown function (DUF454) CH57_1186 PF12794 Mechanosensitive ion channel inner membrane domain 1 CH57_1186 PF00924 Mechanosensitive ion channel CH57_1186 PF12795 Mechanosensitive ion channel porin domain CH57_1187 PF02635 DsrE/DsrF-like family CH57_1188 PF00440 Bacterial regulatory proteins, tetR family CH57_1188 PF08361 MAATS-type transcriptional repressor, C-terminal region CH57_1189 PF00529 HlyD membrane-fusion protein of T1SS CH57_1189 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CH57_119 PF03775 Septum formation inhibitor MinC, C-terminal domain CH57_119 PF05209 Septum formation inhibitor MinC, N-terminal domain CH57_1190 PF00873 AcrB/AcrD/AcrF family CH57_1191 PF01197 Ribosomal protein L31 CH57_1192 PF00444 Ribosomal protein L36 CH57_1194 PF10757 Biofilm formation regulator YbaJ CH57_1195 PF05321 Haemolysin expression modulating protein CH57_1196 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain CH57_1197 PF09619 Type III secretion system lipoprotein chaperone (YscW) CH57_1199 PF00909 Ammonium Transporter Family CH57_120 PF05166 YcgL domain CH57_1200 PF00543 Nitrogen regulatory protein P-II CH57_1201 PF00005 ABC transporter CH57_1201 PF00664 ABC transporter transmembrane region CH57_1202 PF00664 ABC transporter transmembrane region CH57_1202 PF00005 ABC transporter CH57_1203 PF13404 AsnC-type helix-turn-helix domain CH57_1203 PF01037 Lrp/AsnC ligand binding domain CH57_1204 PF00291 Pyridoxal-phosphate dependent enzyme CH57_1206 PF12793 Sugar transport-related sRNA regulator N-term CH57_1206 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CH57_1207 PF06508 Queuosine biosynthesis protein QueC CH57_121 PF13406 Transglycosylase SLT domain CH57_1210 PF13145 PPIC-type PPIASE domain CH57_1211 PF00216 Bacterial DNA-binding protein CH57_1212 PF02190 ATP-dependent protease La (LON) substrate-binding domain CH57_1212 PF05362 Lon protease (S16) C-terminal proteolytic domain CH57_1212 PF00004 ATPase family associated with various cellular activities (AAA) CH57_1213 PF06689 ClpX C4-type zinc finger CH57_1213 PF07724 AAA domain (Cdc48 subfamily) CH57_1213 PF10431 C-terminal, D2-small domain, of ClpB protein CH57_1214 PF00574 Clp protease CH57_1215 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CH57_1215 PF05698 Bacterial trigger factor protein (TF) C-terminus CH57_1215 PF05697 Bacterial trigger factor protein (TF) CH57_1217 PF01722 BolA-like protein CH57_1218 PF08139 Prokaryotic membrane lipoprotein lipid attachment site CH57_1218 PF03923 Uncharacterized lipoprotein CH57_1219 PF07690 Major Facilitator Superfamily CH57_122 PF01557 Fumarylacetoacetate (FAA) hydrolase family CH57_1220 PF03502 Nucleoside-specific channel-forming protein, Tsx CH57_1221 PF00116 Cytochrome C oxidase subunit II, periplasmic domain CH57_1221 PF06481 COX Aromatic Rich Motif CH57_1222 PF00115 Cytochrome C and Quinol oxidase polypeptide I CH57_1223 PF00510 Cytochrome c oxidase subunit III CH57_1224 PF03626 Prokaryotic Cytochrome C oxidase subunit IV CH57_1225 PF01040 UbiA prenyltransferase family CH57_1226 PF07690 Major Facilitator Superfamily CH57_1227 PF04461 Protein of unknown function (DUF520) CH57_1228 PF08546 Ketopantoate reductase PanE/ApbA C terminal CH57_1228 PF02558 Ketopantoate reductase PanE/ApbA CH57_1229 PF01965 DJ-1/PfpI family CH57_123 PF03692 Putative zinc- or iron-chelating domain CH57_1230 PF02926 THUMP domain CH57_1230 PF02568 Thiamine biosynthesis protein (ThiI) CH57_1231 PF02609 Exonuclease VII small subunit CH57_1232 PF00348 Polyprenyl synthetase CH57_1233 PF13292 1-deoxy-D-xylulose-5-phosphate synthase CH57_1233 PF02779 Transketolase, pyrimidine binding domain CH57_1233 PF02780 Transketolase, C-terminal domain CH57_1234 PF01797 Transposase IS200 like CH57_1235 PF04608 Phosphatidylglycerophosphatase A CH57_1236 PF02769 AIR synthase related protein, C-terminal domain CH57_1236 PF00586 AIR synthase related protein, N-terminal domain CH57_1237 PF01029 NusB family CH57_1238 PF00885 6,7-dimethyl-8-ribityllumazine synthase CH57_1239 PF01872 RibD C-terminal domain CH57_1239 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region CH57_124 PF12167 Arm DNA-binding domain CH57_124 PF00589 Phage integrase family CH57_1240 PF03477 ATP cone domain CH57_1243 PF01797 Transposase IS200 like CH57_1244 PF07549 SecD/SecF GG Motif CH57_1244 PF02355 Protein export membrane protein CH57_1245 PF13721 SecD export protein N-terminal TM region CH57_1245 PF02355 Protein export membrane protein CH57_1245 PF07549 SecD/SecF GG Motif CH57_1246 PF02699 Preprotein translocase subunit CH57_1247 PF01702 Queuine tRNA-ribosyltransferase CH57_1248 PF02547 Queuosine biosynthesis protein CH57_1249 PF04336 Acyl carrier protein phosphodiesterase CH57_125 PF00665 Integrase core domain CH57_125 PF02796 Helix-turn-helix domain of resolvase CH57_1250 PF10417 C-terminal domain of 1-Cys peroxiredoxin CH57_1250 PF00578 AhpC/TSA family CH57_1251 PF01797 Transposase IS200 like CH57_1255 PF02903 Alpha amylase, N-terminal ig-like domain CH57_1255 PF00128 Alpha amylase, catalytic domain CH57_1256 PF00324 Amino acid permease CH57_1257 PF05525 Branched-chain amino acid transport protein CH57_1258 PF12849 PBP superfamily domain CH57_1259 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH57_1259 PF11808 Phosphate regulon sensor protein PhoR CH57_1259 PF00512 His Kinase A (phospho-acceptor) domain CH57_1259 PF00989 PAS fold CH57_126 PF00665 Integrase core domain CH57_126 PF02796 Helix-turn-helix domain of resolvase CH57_1260 PF00072 Response regulator receiver domain CH57_1260 PF00486 Transcriptional regulatory protein, C terminal CH57_1261 PF12320 Type 5 capsule protein repressor C-terminal domain CH57_1261 PF00149 Calcineurin-like phosphoesterase CH57_1262 PF13476 AAA domain CH57_1263 PF01695 IstB-like ATP binding protein CH57_1264 PF00665 Integrase core domain CH57_1264 PF02796 Helix-turn-helix domain of resolvase CH57_1265 PF00480 ROK family CH57_1266 PF04381 Putative exonuclease, RdgC CH57_1267 PF06865 Pyrimidine/purine nucleoside phosphorylase CH57_1268 PF01202 Shikimate kinase CH57_127 PF01695 IstB-like ATP binding protein CH57_1270 PF08241 Methyltransferase domain CH57_1272 PF07238 PilZ domain CH57_1272 PF07317 Flagellar regulator YcgR CH57_1273 PF00171 Aldehyde dehydrogenase family CH57_1274 PF00696 Amino acid kinase family CH57_1274 PF01472 PUA domain CH57_1275 PF07417 Sigma factor-binding transcriptional regulator Crl CH57_1277 PF00156 Phosphoribosyl transferase domain CH57_1281 PF07687 Peptidase dimerisation domain CH57_1281 PF01546 Peptidase family M20/M25/M40 CH57_1282 PF00817 impB/mucB/samB family CH57_1282 PF11798 IMS family HHH motif CH57_1282 PF11799 impB/mucB/samB family C-terminal domain CH57_1283 PF03009 Glycerophosphoryl diester phosphodiesterase family CH57_1285 PF02424 ApbE family CH57_1286 PF00970 Oxidoreductase FAD-binding domain CH57_1286 PF00111 2Fe-2S iron-sulfur cluster binding domain CH57_1286 PF00175 Oxidoreductase NAD-binding domain CH57_1287 PF02508 Rnf-Nqr subunit, membrane protein CH57_1288 PF02508 Rnf-Nqr subunit, membrane protein CH57_1289 PF04205 FMN-binding domain CH57_1290 PF03116 NQR2, RnfD, RnfE family CH57_1291 PF05896 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) CH57_1291 PF11973 NQRA C-terminal domain CH57_1292 PF13230 Glutamine amidotransferases class-II CH57_1293 PF03734 L,D-transpeptidase catalytic domain CH57_1294 PF13580 SIS domain CH57_1295 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CH57_1295 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CH57_1295 PF09317 Domain of unknown function (DUF1974) CH57_1297 PF18071 HMW1C N-terminal CH57_1297 PF18254 HMW1 domain 2 CH57_1298 PF05860 haemagglutination activity domain CH57_1299 PF08479 POTRA domain, ShlB-type CH57_1299 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB CH57_13 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III CH57_13 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal CH57_130 PF05772 NinB protein CH57_1300 PF01546 Peptidase family M20/M25/M40 CH57_1300 PF07687 Peptidase dimerisation domain CH57_1301 PF00266 Aminotransferase class-V CH57_1302 PF00665 Integrase core domain CH57_1302 PF02796 Helix-turn-helix domain of resolvase CH57_1303 PF01695 IstB-like ATP binding protein CH57_1304 PF00266 Aminotransferase class-V CH57_1305 PF00005 ABC transporter CH57_1307 PF00528 Binding-protein-dependent transport system inner membrane component CH57_1308 PF00497 Bacterial extracellular solute-binding proteins, family 3 CH57_1311 PF01425 Amidase CH57_1313 PF07690 Major Facilitator Superfamily CH57_1314 PF03591 AzlC protein CH57_1315 PF05437 Branched-chain amino acid transport protein (AzlD) CH57_1316 PF01047 MarR family CH57_1317 PF00529 HlyD membrane-fusion protein of T1SS CH57_1317 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CH57_1318 PF07690 Major Facilitator Superfamily CH57_1319 PF08032 RNA 2'-O ribose methyltransferase substrate binding CH57_1319 PF00588 SpoU rRNA Methylase family CH57_132 PF06530 Phage antitermination protein Q CH57_1320 PF00085 Thioredoxin CH57_1322 PF00583 Acetyltransferase (GNAT) family CH57_1322 PF13607 Succinyl-CoA ligase like flavodoxin domain CH57_1322 PF13380 CoA binding domain CH57_1323 PF13091 PLD-like domain CH57_1324 PF10043 Predicted periplasmic lipoprotein (DUF2279) CH57_1331 PF02861 Clp amino terminal domain, pathogenicity island component CH57_1331 PF17871 AAA lid domain CH57_1331 PF10431 C-terminal, D2-small domain, of ClpB protein CH57_1331 PF00004 ATPase family associated with various cellular activities (AAA) CH57_1331 PF07724 AAA domain (Cdc48 subfamily) CH57_1333 PF01479 S4 domain CH57_1333 PF00849 RNA pseudouridylate synthase CH57_1334 PF13525 Outer membrane lipoprotein CH57_1335 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein CH57_1336 PF01797 Transposase IS200 like CH57_1337 PF01817 Chorismate mutase type II CH57_1337 PF00800 Prephenate dehydratase CH57_1338 PF02796 Helix-turn-helix domain of resolvase CH57_1338 PF00665 Integrase core domain CH57_1340 PF01695 IstB-like ATP binding protein CH57_1341 PF01817 Chorismate mutase type II CH57_1341 PF00800 Prephenate dehydratase CH57_1342 PF01817 Chorismate mutase type II CH57_1342 PF02153 Prephenate dehydrogenase CH57_1343 PF00793 DAHP synthetase I family CH57_1344 PF04397 LytTr DNA-binding domain CH57_1344 PF00072 Response regulator receiver domain CH57_1345 PF03605 Anaerobic c4-dicarboxylate membrane transporter CH57_1346 PF03605 Anaerobic c4-dicarboxylate membrane transporter CH57_1347 PF03605 Anaerobic c4-dicarboxylate membrane transporter CH57_1348 PF04338 Protein of unknown function, DUF481 CH57_1349 PF01797 Transposase IS200 like CH57_1350 PF01245 Ribosomal protein L19 CH57_1351 PF01746 tRNA (Guanine-1)-methyltransferase CH57_1352 PF01782 RimM N-terminal domain CH57_1352 PF05239 PRC-barrel domain CH57_1353 PF00886 Ribosomal protein S16 CH57_1354 PF02978 Signal peptide binding domain CH57_1354 PF00448 SRP54-type protein, GTPase domain CH57_1354 PF02881 SRP54-type protein, helical bundle domain CH57_1355 PF01578 Cytochrome C assembly protein CH57_1356 PF01595 Cyclin M transmembrane N-terminal domain CH57_1356 PF03471 Transporter associated domain CH57_1356 PF00571 CBS domain CH57_1357 PF00665 Integrase core domain CH57_1357 PF02796 Helix-turn-helix domain of resolvase CH57_1360 PF01695 IstB-like ATP binding protein CH57_1361 PF01595 Cyclin M transmembrane N-terminal domain CH57_1361 PF00571 CBS domain CH57_1361 PF03471 Transporter associated domain CH57_1362 PF01797 Transposase IS200 like CH57_1363 PF02664 S-Ribosylhomocysteinase (LuxS) CH57_1364 PF04262 Glutamate-cysteine ligase CH57_1365 PF09335 SNARE associated Golgi protein CH57_1366 PF13419 Haloacid dehalogenase-like hydrolase CH57_1371 PF00872 Transposase, Mutator family CH57_1372 PF00872 Transposase, Mutator family CH57_1373 PF02599 Global regulator protein family CH57_1374 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain CH57_1374 PF02272 DHHA1 domain CH57_1374 PF01411 tRNA synthetases class II (A) CH57_1375 PF00872 Transposase, Mutator family CH57_1376 PF00872 Transposase, Mutator family CH57_1377 PF02631 RecX family CH57_1378 PF00154 recA bacterial DNA recombination protein CH57_1379 PF02464 Competence-damaged protein CH57_1380 PF07690 Major Facilitator Superfamily CH57_1383 PF00370 FGGY family of carbohydrate kinases, N-terminal domain CH57_1383 PF02782 FGGY family of carbohydrate kinases, C-terminal domain CH57_1384 PF02779 Transketolase, pyrimidine binding domain CH57_1384 PF02780 Transketolase, C-terminal domain CH57_1385 PF00456 Transketolase, thiamine diphosphate binding domain CH57_1386 PF02653 Branched-chain amino acid transport system / permease component CH57_1387 PF00005 ABC transporter CH57_1390 PF00141 Peroxidase CH57_1391 PF07361 Cytochrome b562 CH57_1392 PF01292 Prokaryotic cytochrome b561 CH57_1393 PF02613 Nitrate reductase delta subunit CH57_1394 PF04976 DMSO reductase anchor subunit (DmsC) CH57_1395 PF13247 4Fe-4S dicluster domain CH57_1395 PF12800 4Fe-4S binding domain CH57_1396 PF00384 Molybdopterin oxidoreductase CH57_1396 PF01568 Molydopterin dinucleotide binding domain CH57_1396 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CH57_1397 PF00596 Class II Aldolase and Adducin N-terminal domain CH57_1398 PF08220 DeoR-like helix-turn-helix domain CH57_1398 PF00455 DeoR C terminal sensor domain CH57_14 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal CH57_14 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III CH57_1400 PF01797 Transposase IS200 like CH57_1401 PF00005 ABC transporter CH57_1402 PF02653 Branched-chain amino acid transport system / permease component CH57_1403 PF02653 Branched-chain amino acid transport system / permease component CH57_1404 PF01261 Xylose isomerase-like TIM barrel CH57_1405 PF00370 FGGY family of carbohydrate kinases, N-terminal domain CH57_1405 PF02782 FGGY family of carbohydrate kinases, C-terminal domain CH57_1406 PF05681 Fumarate hydratase (Fumerase) CH57_1406 PF05683 Fumarase C-terminus CH57_1408 PF00557 Metallopeptidase family M24 CH57_1411 PF07715 TonB-dependent Receptor Plug Domain CH57_1411 PF00593 TonB dependent receptor CH57_1413 PF14376 Haem-binding domain CH57_1413 PF00034 Cytochrome c CH57_1413 PF03150 Di-haem cytochrome c peroxidase CH57_1414 PF00497 Bacterial extracellular solute-binding proteins, family 3 CH57_1417 PF01022 Bacterial regulatory protein, arsR family CH57_1418 PF02040 Arsenical pump membrane protein CH57_1419 PF13936 Helix-turn-helix domain CH57_1419 PF04198 Putative sugar-binding domain CH57_1420 PF02734 DAK2 domain CH57_1421 PF02733 Dak1 domain CH57_1423 PF08240 Alcohol dehydrogenase GroES-like domain CH57_1423 PF00107 Zinc-binding dehydrogenase CH57_1424 PF02502 Ribose/Galactose Isomerase CH57_1425 PF05192 MutS domain III CH57_1425 PF05188 MutS domain II CH57_1425 PF01624 MutS domain I CH57_1425 PF05190 MutS family domain IV CH57_1425 PF00488 MutS domain V CH57_1426 PF00140 Sigma-70 factor, region 1.2 CH57_1426 PF04542 Sigma-70 region 2 CH57_1426 PF04539 Sigma-70 region 3 CH57_1426 PF04545 Sigma-70, region 4 CH57_1427 PF01551 Peptidase family M23 CH57_1427 PF01476 LysM domain CH57_1429 PF01975 Survival protein SurE CH57_1430 PF01142 tRNA pseudouridine synthase D (TruD) CH57_1431 PF02542 YgbB family CH57_1432 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase CH57_1433 PF04977 Septum formation initiator CH57_1434 PF12084 Protein of unknown function (DUF3561) CH57_1436 PF00009 Elongation factor Tu GTP binding domain CH57_1437 PF01507 Phosphoadenosine phosphosulfate reductase family CH57_1438 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CH57_1438 PF10414 Sirohaem synthase dimerisation region CH57_1438 PF14824 Sirohaem biosynthesis protein central CH57_1442 PF01507 Phosphoadenosine phosphosulfate reductase family CH57_1443 PF01507 Phosphoadenosine phosphosulfate reductase family CH57_1444 PF01077 Nitrite and sulphite reductase 4Fe-4S domain CH57_1444 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain CH57_1445 PF00258 Flavodoxin CH57_1445 PF00667 FAD binding domain CH57_1445 PF00175 Oxidoreductase NAD-binding domain CH57_1446 PF01242 6-pyruvoyl tetrahydropterin synthase CH57_1447 PF04055 Radical SAM superfamily CH57_1448 PF00080 Copper/zinc superoxide dismutase (SODC) CH57_1449 PF03952 Enolase, N-terminal domain CH57_1449 PF00113 Enolase, C-terminal TIM barrel domain CH57_145 PF00872 Transposase, Mutator family CH57_1450 PF00117 Glutamine amidotransferase class-I CH57_1450 PF06418 CTP synthase N-terminus CH57_1451 PF03819 MazG nucleotide pyrophosphohydrolase domain CH57_1452 PF04607 Region found in RelA / SpoT proteins CH57_1452 PF02824 TGS domain CH57_1452 PF13291 ACT domain CH57_1453 PF01627 Hpt domain CH57_1453 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH57_1453 PF00512 His Kinase A (phospho-acceptor) domain CH57_1453 PF00072 Response regulator receiver domain CH57_1453 PF00672 HAMP domain CH57_1453 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) CH57_1454 PF00595 PDZ domain CH57_1455 PF13286 Phosphohydrolase-associated domain CH57_1455 PF01966 HD domain CH57_1456 PF01048 Phosphorylase superfamily CH57_1457 PF01497 Periplasmic binding protein CH57_1458 PF03458 UPF0126 domain CH57_1459 PF01521 Iron-sulphur cluster biosynthesis CH57_1460 PF00654 Voltage gated chloride channel CH57_1461 PF00202 Aminotransferase class-III CH57_1462 PF01032 FecCD transport family CH57_1463 PF01497 Periplasmic binding protein CH57_1464 PF00005 ABC transporter CH57_1465 PF00912 Transglycosylase CH57_1465 PF00905 Penicillin binding protein transpeptidase domain CH57_1465 PF14812 Transmembrane domain of transglycosylase PBP1 at N-terminal CH57_1465 PF14814 Bifunctional transglycosylase second domain CH57_1466 PF00270 DEAD/DEAH box helicase CH57_1466 PF04408 Helicase associated domain (HA2) CH57_1466 PF00271 Helicase conserved C-terminal domain CH57_1466 PF08482 ATP-dependent helicase C-terminal CH57_1467 PF02834 LigT like Phosphoesterase CH57_1468 PF03749 Sugar fermentation stimulation protein RE domain CH57_1468 PF17746 SfsA N-terminal OB domain CH57_1469 PF01258 Prokaryotic dksA/traR C4-type zinc finger CH57_1470 PF00749 tRNA synthetases class I (E and Q), catalytic domain CH57_1471 PF01743 Poly A polymerase head domain CH57_1471 PF12626 Polymerase A arginine-rich C-terminus CH57_1471 PF12627 Probable RNA and SrmB- binding site of polymerase A CH57_1472 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) CH57_1473 PF02548 Ketopantoate hydroxymethyltransferase CH57_1474 PF02569 Pantoate-beta-alanine ligase CH57_1475 PF02261 Aspartate decarboxylase CH57_1476 PF01522 Polysaccharide deacetylase CH57_1477 PF01061 ABC-2 type transporter CH57_1478 PF00005 ABC transporter CH57_1479 PF00484 Carbonic anhydrase CH57_1480 PF00156 Phosphoribosyl transferase domain CH57_1481 PF00394 Multicopper oxidase CH57_1481 PF10518 TAT (twin-arginine translocation) pathway signal sequence CH57_1481 PF07731 Multicopper oxidase CH57_1481 PF07732 Multicopper oxidase CH57_1482 PF09691 Type II secretion system pilotin lipoprotein (PulS_OutS) CH57_1483 PF17284 Spermidine synthase tetramerisation domain CH57_1484 PF02675 S-adenosylmethionine decarboxylase CH57_1485 PF00892 EamA-like transporter family CH57_1486 PF06062 Uncharacterised protein family (UPF0231) CH57_1487 PF11791 Aconitate B N-terminal domain CH57_1487 PF00330 Aconitase family (aconitate hydratase) CH57_1487 PF06434 Aconitate hydratase 2 N-terminus CH57_1488 PF01797 Transposase IS200 like CH57_1489 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CH57_1489 PF07992 Pyridine nucleotide-disulphide oxidoreductase CH57_1490 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) CH57_1490 PF02817 e3 binding domain CH57_1490 PF00364 Biotin-requiring enzyme CH57_1491 PF00456 Transketolase, thiamine diphosphate binding domain CH57_1491 PF17831 Pyruvate dehydrogenase E1 component middle domain CH57_1492 PF00392 Bacterial regulatory proteins, gntR family CH57_1492 PF07729 FCD domain CH57_1493 PF00324 Amino acid permease CH57_1494 PF17113 Regulatory signalling modulator protein AmpE CH57_1495 PF01510 N-acetylmuramoyl-L-alanine amidase CH57_1496 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain CH57_1496 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain CH57_1497 PF07963 Prokaryotic N-terminal methylation motif CH57_1498 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain CH57_1498 PF00437 Type II/IV secretion system protein CH57_1499 PF00482 Type II secretion system (T2SS), protein F CH57_15 PF01370 NAD dependent epimerase/dehydratase family CH57_1500 PF00478 IMP dehydrogenase / GMP reductase domain CH57_1501 PF01121 Dephospho-CoA kinase CH57_1502 PF07072 Cell division protein CH57_1503 PF03884 DNA gyrase inhibitor YacG CH57_1504 PF01797 Transposase IS200 like CH57_1505 PF00665 Integrase core domain CH57_1505 PF02796 Helix-turn-helix domain of resolvase CH57_1506 PF01695 IstB-like ATP binding protein CH57_1507 PF01119 DNA mismatch repair protein, C-terminal domain CH57_1507 PF08676 MutL C terminal dimerisation domain CH57_1509 PF00589 Phage integrase family CH57_1509 PF13356 Arm DNA-binding domain CH57_1511 PF03739 Lipopolysaccharide export system permease LptF/LptG CH57_1512 PF03739 Lipopolysaccharide export system permease LptF/LptG CH57_1513 PF00883 Cytosol aminopeptidase family, catalytic domain CH57_1513 PF02789 Cytosol aminopeptidase family, N-terminal domain CH57_1514 PF04364 DNA polymerase III chi subunit, HolC CH57_1515 PF10458 Valyl tRNA synthetase tRNA binding arm CH57_1515 PF00133 tRNA synthetases class I (I, L, M and V) CH57_1515 PF08264 Anticodon-binding domain of tRNA CH57_1516 PF00583 Acetyltransferase (GNAT) family CH57_1517 PF06877 Regulator of ribonuclease activity B CH57_1518 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain CH57_1518 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain CH57_1519 PF04074 YhcH/YjgK/YiaL CH57_1522 PF00528 Binding-protein-dependent transport system inner membrane component CH57_1523 PF00528 Binding-protein-dependent transport system inner membrane component CH57_1523 PF12911 N-terminal TM domain of oligopeptide transport permease C CH57_1524 PF00005 ABC transporter CH57_1524 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CH57_1525 PF00005 ABC transporter CH57_1525 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CH57_1526 PF13597 Anaerobic ribonucleoside-triphosphate reductase CH57_1526 PF03477 ATP cone domain CH57_1529 PF07702 UTRA domain CH57_1529 PF00392 Bacterial regulatory proteins, gntR family CH57_1530 PF06754 Phosphonate metabolism protein PhnG CH57_1531 PF05845 Bacterial phosphonate metabolism protein (PhnH) CH57_1532 PF05861 Bacterial phosphonate metabolism protein (PhnI) CH57_1533 PF06007 Phosphonate metabolism protein PhnJ CH57_1534 PF00005 ABC transporter CH57_1535 PF00005 ABC transporter CH57_1536 PF07969 Amidohydrolase family CH57_1538 PF12706 Beta-lactamase superfamily domain CH57_1539 PF13460 NAD(P)H-binding CH57_1542 PF00005 ABC transporter CH57_1542 PF03459 TOBE domain CH57_1542 PF17912 MalK OB fold domain CH57_1543 PF00528 Binding-protein-dependent transport system inner membrane component CH57_1545 PF13416 Bacterial extracellular solute-binding protein CH57_1548 PF01541 GIY-YIG catalytic domain CH57_1549 PF13508 Acetyltransferase (GNAT) domain CH57_1553 PF02321 Outer membrane efflux protein CH57_1553 PF08139 Prokaryotic membrane lipoprotein lipid attachment site CH57_1554 PF00873 AcrB/AcrD/AcrF family CH57_1555 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CH57_1555 PF00529 HlyD membrane-fusion protein of T1SS CH57_1557 PF00296 Luciferase-like monooxygenase CH57_1558 PF01381 Helix-turn-helix CH57_1560 PF00271 Helicase conserved C-terminal domain CH57_1560 PF12343 Cold shock protein DEAD box A CH57_1560 PF00270 DEAD/DEAH box helicase CH57_1560 PF03880 DbpA RNA binding domain CH57_1561 PF07719 Tetratricopeptide repeat CH57_1561 PF13181 Tetratricopeptide repeat CH57_1562 PF00575 S1 RNA binding domain CH57_1562 PF03725 3' exoribonuclease family, domain 2 CH57_1562 PF01138 3' exoribonuclease family, domain 1 CH57_1562 PF00013 KH domain CH57_1562 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain CH57_1563 PF00665 Integrase core domain CH57_1563 PF13333 Integrase core domain CH57_1563 PF13276 HTH-like domain CH57_1565 PF00312 Ribosomal protein S15 CH57_1566 PF09157 Pseudouridine synthase II TruB, C-terminal CH57_1566 PF01509 TruB family pseudouridylate synthase (N terminal domain) CH57_1566 PF16198 tRNA pseudouridylate synthase B C-terminal domain CH57_1567 PF02033 Ribosome-binding factor A CH57_1568 PF08364 Bacterial translation initiation factor IF-2 associated region CH57_1568 PF03144 Elongation factor Tu domain 2 CH57_1568 PF04760 Translation initiation factor IF-2, N-terminal region CH57_1568 PF11987 Translation-initiation factor 2 CH57_1568 PF00009 Elongation factor Tu GTP binding domain CH57_1569 PF00575 S1 RNA binding domain CH57_1569 PF08529 NusA N-terminal domain CH57_1569 PF13184 NusA-like KH domain CH57_1570 PF02576 RimP N-terminal domain CH57_1570 PF17384 RimP C-terminal SH3 domain CH57_1573 PF03840 Preprotein translocase SecG subunit CH57_1574 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain CH57_1574 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I CH57_1574 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II CH57_1574 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III CH57_1575 PF00809 Pterin binding enzyme CH57_1576 PF01434 Peptidase family M41 CH57_1576 PF00004 ATPase family associated with various cellular activities (AAA) CH57_1576 PF17862 AAA+ lid domain CH57_1576 PF06480 FtsH Extracellular CH57_1577 PF01728 FtsJ-like methyltransferase CH57_1578 PF01985 CRS1 / YhbY (CRM) domain CH57_1579 PF03449 Transcription elongation factor, N-terminal CH57_1579 PF01272 Transcription elongation factor, GreA/GreB, C-term CH57_1580 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family CH57_1581 PF00486 Transcriptional regulatory protein, C terminal CH57_1581 PF00072 Response regulator receiver domain CH57_1582 PF00672 HAMP domain CH57_1582 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH57_1582 PF00512 His Kinase A (phospho-acceptor) domain CH57_1583 PF01926 50S ribosome-binding GTPase CH57_1583 PF01018 GTP1/OBG CH57_1584 PF00892 EamA-like transporter family CH57_1585 PF01016 Ribosomal L27 protein CH57_1586 PF00829 Ribosomal prokaryotic L21 protein CH57_1587 PF00348 Polyprenyl synthetase CH57_1589 PF13693 Winged helix-turn-helix DNA-binding CH57_1590 PF00056 lactate/malate dehydrogenase, NAD binding domain CH57_1590 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain CH57_1591 PF02863 Arginine repressor, C-terminal domain CH57_1591 PF01316 Arginine repressor, DNA binding domain CH57_1593 PF08245 Mur ligase middle domain CH57_1593 PF02875 Mur ligase family, glutamate ligase domain CH57_1593 PF01225 Mur ligase family, catalytic domain CH57_1594 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain CH57_1595 PF00719 Inorganic pyrophosphatase CH57_1596 PF06094 Gamma-glutamyl cyclotransferase, AIG2-like CH57_1597 PF04357 TamB, inner membrane protein subunit of TAM complex CH57_1598 PF17243 POTRA domain TamA domain 1 CH57_1598 PF07244 Surface antigen variable number repeat CH57_1598 PF01103 Surface antigen CH57_1599 PF01625 Peptide methionine sulfoxide reductase CH57_1600 PF03471 Transporter associated domain CH57_1600 PF01595 Cyclin M transmembrane N-terminal domain CH57_1600 PF00571 CBS domain CH57_1601 PF06526 Protein of unknown function (DUF1107) CH57_1602 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) CH57_1603 PF00459 Inositol monophosphatase family CH57_1604 PF00149 Calcineurin-like phosphoesterase CH57_1604 PF02872 5'-nucleotidase, C-terminal domain CH57_1605 PF01814 Hemerythrin HHE cation binding domain CH57_1605 PF04405 Domain of Unknown function (DUF542) CH57_1606 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase CH57_1606 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CH57_1607 PF04225 Opacity-associated protein A LysM-like domain CH57_1607 PF08525 Opacity-associated protein A N-terminal motif CH57_1609 PF01797 Transposase IS200 like CH57_1610 PF01281 Ribosomal protein L9, N-terminal domain CH57_1610 PF03948 Ribosomal protein L9, C-terminal domain CH57_1611 PF01084 Ribosomal protein S18 CH57_1612 PF01250 Ribosomal protein S6 CH57_1614 PF00326 Prolyl oligopeptidase family CH57_1615 PF00665 Integrase core domain CH57_1615 PF02796 Helix-turn-helix domain of resolvase CH57_1616 PF01695 IstB-like ATP binding protein CH57_1617 PF13409 Glutathione S-transferase, N-terminal domain CH57_1618 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH57_1618 PF03466 LysR substrate binding domain CH57_1619 PF17954 Quercetinase C-terminal cupin domain CH57_1619 PF02678 Pirin CH57_162 PF01797 Transposase IS200 like CH57_1620 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CH57_1621 PF04348 LppC putative lipoprotein CH57_1622 PF02021 Uncharacterised protein family UPF0102 CH57_1623 PF13580 SIS domain CH57_1624 PF04972 BON domain CH57_1625 PF00912 Transglycosylase CH57_1627 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH57_1627 PF00072 Response regulator receiver domain CH57_1627 PF00512 His Kinase A (phospho-acceptor) domain CH57_1627 PF18415 Histidine kinase receptor ArcB trans-membrane domain CH57_1627 PF00989 PAS fold CH57_1627 PF01627 Hpt domain CH57_1628 PF04055 Radical SAM superfamily CH57_1628 PF16199 Radical_SAM C-terminal domain CH57_1629 PF04898 Glutamate synthase central domain CH57_1629 PF01493 GXGXG motif CH57_1629 PF00310 Glutamine amidotransferases class-II CH57_1629 PF01645 Conserved region in glutamate synthase CH57_1630 PF07992 Pyridine nucleotide-disulphide oxidoreductase CH57_1630 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster CH57_1632 PF04386 Stringent starvation protein B CH57_1633 PF00043 Glutathione S-transferase, C-terminal domain CH57_1633 PF02798 Glutathione S-transferase, N-terminal domain CH57_1634 PF00380 Ribosomal protein S9/S16 CH57_1635 PF00572 Ribosomal protein L13 CH57_1636 PF03969 AFG1-like ATPase CH57_1637 PF06295 Protein of unknown function (DUF1043) CH57_1638 PF00595 PDZ domain CH57_1638 PF13180 PDZ domain CH57_1639 PF01797 Transposase IS200 like CH57_1640 PF13180 PDZ domain CH57_1641 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) CH57_1642 PF01722 BolA-like protein CH57_1643 PF13466 STAS domain CH57_1644 PF05494 MlaC protein CH57_1645 PF02470 MlaD protein CH57_1646 PF02405 Permease MlaE CH57_1647 PF00005 ABC transporter CH57_1648 PF01699 Sodium/calcium exchanger protein CH57_1649 PF00571 CBS domain CH57_1649 PF01380 SIS domain CH57_1651 PF06835 Lipopolysaccharide-assembly, LptC-related CH57_1652 PF03968 OstA-like protein CH57_1653 PF12399 Branched-chain amino acid ATP-binding cassette transporter CH57_1653 PF00005 ABC transporter CH57_1654 PF04963 Sigma-54 factor, core binding domain CH57_1654 PF04552 Sigma-54, DNA binding domain CH57_1654 PF00309 Sigma-54 factor, Activator interacting domain (AID) CH57_1655 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein CH57_1656 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 CH57_1657 PF03668 P-loop ATPase protein family CH57_1658 PF00381 PTS HPr component phosphorylation site CH57_1659 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain CH57_1659 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain CH57_1660 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain CH57_1660 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain CH57_1661 PF01042 Endoribonuclease L-PSP CH57_1662 PF02796 Helix-turn-helix domain of resolvase CH57_1662 PF00665 Integrase core domain CH57_1663 PF01695 IstB-like ATP binding protein CH57_1665 PF00356 Bacterial regulatory proteins, lacI family CH57_1666 PF02378 Phosphotransferase system, EIIC CH57_1666 PF00367 phosphotransferase system, EIIB CH57_1667 PF11941 Domain of unknown function (DUF3459) CH57_1667 PF00128 Alpha amylase, catalytic domain CH57_1668 PF01272 Transcription elongation factor, GreA/GreB, C-term CH57_1668 PF14760 Rnk N-terminus CH57_1669 PF07361 Cytochrome b562 CH57_1671 PF01523 Putative modulator of DNA gyrase CH57_1672 PF04751 Protein of unknown function (DUF615) CH57_1673 PF01337 Barstar (barnase inhibitor) CH57_1675 PF00171 Aldehyde dehydrogenase family CH57_1676 PF00171 Aldehyde dehydrogenase family CH57_1677 PF04632 Fusaric acid resistance protein family CH57_1678 PF13533 Biotin-lipoyl like CH57_1679 PF07869 Protein of unknown function (DUF1656) CH57_1680 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH57_1680 PF03466 LysR substrate binding domain CH57_1685 PF03534 Salmonella virulence plasmid 65kDa B protein CH57_1685 PF12255 Insecticide toxin TcdB middle/C-terminal region CH57_1685 PF12256 Insecticide toxin TcdB middle/N-terminal region CH57_1689 PF18807 Tripartite Tc toxins repeat CH57_1689 PF05785 Rho-activating domain of cytotoxic necrotizing factor CH57_1690 PF18807 Tripartite Tc toxins repeat CH57_1690 PF14431 YwqJ-like deaminase CH57_1691 PF01523 Putative modulator of DNA gyrase CH57_1692 PF00795 Carbon-nitrogen hydrolase CH57_1693 PF13502 AsmA-like C-terminal region CH57_1693 PF13116 Protein of unknown function CH57_1694 PF00575 S1 RNA binding domain CH57_1694 PF10150 Ribonuclease E/G family CH57_1695 PF02545 Maf-like protein CH57_1696 PF04093 rod shape-determining protein MreD CH57_1697 PF04085 rod shape-determining protein MreC CH57_1699 PF17157 Gammaproteobacterial periplasmic sensor domain CH57_1699 PF00990 Diguanylate cyclase, GGDEF domain CH57_1699 PF00563 EAL domain CH57_1700 PF00107 Zinc-binding dehydrogenase CH57_1700 PF08240 Alcohol dehydrogenase GroES-like domain CH57_1701 PF00174 Oxidoreductase molybdopterin binding domain CH57_1702 PF01794 Ferric reductase like transmembrane component CH57_1703 PF01220 Dehydroquinase class II CH57_1704 PF00364 Biotin-requiring enzyme CH57_1705 PF02785 Biotin carboxylase C-terminal domain CH57_1705 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain CH57_1705 PF00289 Biotin carboxylase, N-terminal domain CH57_1707 PF06196 Protein of unknown function (DUF997) CH57_1708 PF00474 Sodium:solute symporter family CH57_1710 PF01207 Dihydrouridine synthase (Dus) CH57_1711 PF02954 Bacterial regulatory protein, Fis family CH57_1714 PF07690 Major Facilitator Superfamily CH57_1715 PF02627 Carboxymuconolactone decarboxylase family CH57_1716 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase CH57_1716 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase CH57_1717 PF00753 Metallo-beta-lactamase superfamily CH57_1718 PF05433 Glycine zipper 2TM domain CH57_1719 PF00313 'Cold-shock' DNA-binding domain CH57_1720 PF00313 'Cold-shock' DNA-binding domain CH57_1721 PF01797 Transposase IS200 like CH57_1724 PF02798 Glutathione S-transferase, N-terminal domain CH57_1725 PF01380 SIS domain CH57_1725 PF00571 CBS domain CH57_1726 PF00370 FGGY family of carbohydrate kinases, N-terminal domain CH57_1726 PF02782 FGGY family of carbohydrate kinases, C-terminal domain CH57_1728 PF02653 Branched-chain amino acid transport system / permease component CH57_1729 PF00005 ABC transporter CH57_1731 PF03279 Bacterial lipid A biosynthesis acyltransferase CH57_1733 PF00999 Sodium/hydrogen exchanger family CH57_1734 PF00860 Permease family CH57_1735 PF04221 RelB antitoxin CH57_1736 PF00005 ABC transporter CH57_1737 PF00528 Binding-protein-dependent transport system inner membrane component CH57_1738 PF00296 Luciferase-like monooxygenase CH57_1739 PF09084 NMT1/THI5 like CH57_1740 PF03358 NADPH-dependent FMN reductase CH57_1742 PF00294 pfkB family carbohydrate kinase CH57_1743 PF05025 RbsD / FucU transport protein family CH57_1744 PF12833 Helix-turn-helix domain CH57_1744 PF02311 AraC-like ligand binding domain CH57_1745 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CH57_1745 PF02894 Oxidoreductase family, C-terminal alpha/beta domain CH57_1748 PF03527 RHS protein CH57_1748 PF05593 RHS Repeat CH57_1750 PF04717 Type VI secretion system, phage-baseplate injector CH57_1756 PF03527 RHS protein CH57_1756 PF05593 RHS Repeat CH57_1756 PF14220 Domain of unknown function (DUF4329) CH57_1759 PF04717 Type VI secretion system, phage-baseplate injector CH57_1766 PF07724 AAA domain (Cdc48 subfamily) CH57_1766 PF17871 AAA lid domain CH57_1766 PF00004 ATPase family associated with various cellular activities (AAA) CH57_1766 PF10431 C-terminal, D2-small domain, of ClpB protein CH57_177 PF02413 Caudovirales tail fibre assembly protein, lambda gpK CH57_1775 PF13276 HTH-like domain CH57_1775 PF00665 Integrase core domain CH57_1775 PF13333 Integrase core domain CH57_178 PF00872 Transposase, Mutator family CH57_1780 PF05638 Type VI secretion system effector, Hcp CH57_1782 PF07148 Maltose operon periplasmic protein precursor (MalM) CH57_1783 PF02264 LamB porin CH57_1784 PF17912 MalK OB fold domain CH57_1784 PF00005 ABC transporter CH57_1786 PF01547 Bacterial extracellular solute-binding protein CH57_1787 PF00528 Binding-protein-dependent transport system inner membrane component CH57_1787 PF14785 Maltose transport system permease protein MalF P2 domain CH57_1788 PF00528 Binding-protein-dependent transport system inner membrane component CH57_1789 PF06146 Phosphate-starvation-inducible E CH57_1790 PF00342 Phosphoglucose isomerase CH57_1791 PF00696 Amino acid kinase family CH57_1791 PF01842 ACT domain CH57_1792 PF08479 POTRA domain, ShlB-type CH57_1792 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB CH57_1792 PF17287 POTRA domain CH57_1793 PF05860 haemagglutination activity domain CH57_1793 PF13332 Hemagglutinin repeat CH57_1794 PF00809 Pterin binding enzyme CH57_1794 PF02310 B12 binding domain CH57_1794 PF02607 B12 binding domain CH57_1794 PF02965 Vitamin B12 dependent methionine synthase, activation domain CH57_1794 PF02574 Homocysteine S-methyltransferase CH57_1795 PF09339 IclR helix-turn-helix domain CH57_1795 PF01614 Bacterial transcriptional regulator CH57_1796 PF01614 Bacterial transcriptional regulator CH57_1796 PF09339 IclR helix-turn-helix domain CH57_1797 PF06315 Isocitrate dehydrogenase kinase/phosphatase (AceK) CH57_1798 PF00463 Isocitrate lyase family CH57_1799 PF01274 Malate synthase CH57_180 PF00266 Aminotransferase class-V CH57_1800 PF04204 Homoserine O-succinyltransferase CH57_1808 PF02142 MGS-like domain CH57_1808 PF01808 AICARFT/IMPCHase bienzyme CH57_1809 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain CH57_1809 PF02843 Phosphoribosylglycinamide synthetase, C domain CH57_1809 PF02844 Phosphoribosylglycinamide synthetase, N domain CH57_1810 PF07356 Protein of unknown function (DUF1481) CH57_1811 PF00216 Bacterial DNA-binding protein CH57_1812 PF04222 Protein of unknown function (DUF416) CH57_1813 PF04493 Endonuclease V CH57_1814 PF01208 Uroporphyrinogen decarboxylase (URO-D) CH57_1816 PF00293 NUDIX domain CH57_1816 PF09297 NADH pyrophosphatase zinc ribbon domain CH57_1817 PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ CH57_1818 PF13667 ThiC-associated domain CH57_1818 PF01964 Radical SAM ThiC family CH57_1819 PF02581 Thiamine monophosphate synthase CH57_1820 PF00899 ThiF family CH57_1822 PF05690 Thiazole biosynthesis protein ThiG CH57_1823 PF04055 Radical SAM superfamily CH57_1823 PF06968 Biotin and Thiamin Synthesis associated domain CH57_1824 PF01797 Transposase IS200 like CH57_1825 PF05000 RNA polymerase Rpb1, domain 4 CH57_1825 PF04997 RNA polymerase Rpb1, domain 1 CH57_1825 PF04998 RNA polymerase Rpb1, domain 5 CH57_1825 PF04983 RNA polymerase Rpb1, domain 3 CH57_1825 PF00623 RNA polymerase Rpb1, domain 2 CH57_1826 PF04563 RNA polymerase beta subunit CH57_1826 PF04561 RNA polymerase Rpb2, domain 2 CH57_1826 PF04565 RNA polymerase Rpb2, domain 3 CH57_1826 PF00562 RNA polymerase Rpb2, domain 6 CH57_1826 PF10385 RNA polymerase beta subunit external 1 domain CH57_1826 PF04560 RNA polymerase Rpb2, domain 7 CH57_1827 PF16320 Ribosomal protein L7/L12 dimerisation domain CH57_1827 PF00542 Ribosomal protein L7/L12 C-terminal domain CH57_1828 PF00466 Ribosomal protein L10 CH57_1829 PF00687 Ribosomal protein L1p/L10e family CH57_183 PF02600 Disulfide bond formation protein DsbB CH57_1830 PF00298 Ribosomal protein L11, RNA binding domain CH57_1830 PF03946 Ribosomal protein L11, N-terminal domain CH57_1831 PF00467 KOW motif CH57_1831 PF02357 Transcription termination factor nusG CH57_1832 PF00584 SecE/Sec61-gamma subunits of protein translocation complex CH57_1833 PF00009 Elongation factor Tu GTP binding domain CH57_1833 PF03144 Elongation factor Tu domain 2 CH57_1833 PF03143 Elongation factor Tu C-terminal domain CH57_1838 PF01695 IstB-like ATP binding protein CH57_1839 PF00665 Integrase core domain CH57_1839 PF02796 Helix-turn-helix domain of resolvase CH57_184 PF06450 Bacterial Na+/H+ antiporter B (NhaB) CH57_1840 PF13673 Acetyltransferase (GNAT) domain CH57_1841 PF00485 Phosphoribulokinase / Uridine kinase family CH57_1842 PF03099 Biotin/lipoate A/B protein ligase family CH57_1842 PF08279 HTH domain CH57_1842 PF02237 Biotin protein ligase C terminal domain CH57_1843 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain CH57_1843 PF01565 FAD binding domain CH57_1849 PF12724 Flavodoxin domain CH57_185 PF07840 FadR C-terminal domain CH57_185 PF00392 Bacterial regulatory proteins, gntR family CH57_1850 PF02386 Cation transport protein CH57_1851 PF01205 Uncharacterized protein family UPF0029 CH57_1851 PF09186 Domain of unknown function (DUF1949) CH57_1852 PF01797 Transposase IS200 like CH57_1853 PF09186 Domain of unknown function (DUF1949) CH57_1853 PF01205 Uncharacterized protein family UPF0029 CH57_1854 PF00557 Metallopeptidase family M24 CH57_1855 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain CH57_1855 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain CH57_1855 PF00378 Enoyl-CoA hydratase/isomerase CH57_1856 PF00108 Thiolase, N-terminal domain CH57_1856 PF02803 Thiolase, C-terminal domain CH57_1857 PF00970 Oxidoreductase FAD-binding domain CH57_1857 PF00175 Oxidoreductase NAD-binding domain CH57_1858 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase CH57_1859 PF02357 Transcription termination factor nusG CH57_186 PF04293 SpoVR like protein CH57_1860 PF00490 Delta-aminolevulinic acid dehydratase CH57_1861 PF01026 TatD related DNase CH57_1862 PF01695 IstB-like ATP binding protein CH57_1864 PF02796 Helix-turn-helix domain of resolvase CH57_1864 PF00665 Integrase core domain CH57_1865 PF01026 TatD related DNase CH57_1866 PF00902 Sec-independent protein translocase protein (TatC) CH57_1868 PF02416 mttA/Hcf106 family CH57_1869 PF03109 ABC1 family CH57_187 PF01266 FAD dependent oxidoreductase CH57_1870 PF02036 SCP-2 sterol transfer family CH57_1871 PF01209 ubiE/COQ5 methyltransferase family CH57_1872 PF02646 RmuC family CH57_1873 PF09335 SNARE associated Golgi protein CH57_1874 PF02554 Carbon starvation protein CstA CH57_1874 PF13722 5TM C-terminal transporter carbon starvation CstA CH57_1876 PF01048 Phosphorylase superfamily CH57_1877 PF01738 Dienelactone hydrolase family CH57_1878 PF01717 Cobalamin-independent synthase, Catalytic domain CH57_1878 PF08267 Cobalamin-independent synthase, N-terminal domain CH57_1879 PF00892 EamA-like transporter family CH57_188 PF07690 Major Facilitator Superfamily CH57_1880 PF03466 LysR substrate binding domain CH57_1880 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH57_1881 PF03547 Membrane transport protein CH57_1882 PF03009 Glycerophosphoryl diester phosphodiesterase family CH57_1883 PF17912 MalK OB fold domain CH57_1883 PF00005 ABC transporter CH57_1884 PF00528 Binding-protein-dependent transport system inner membrane component CH57_1885 PF00528 Binding-protein-dependent transport system inner membrane component CH57_1886 PF13416 Bacterial extracellular solute-binding protein CH57_189 PF05726 Pirin C-terminal cupin domain CH57_189 PF02678 Pirin CH57_1894 PF00005 ABC transporter CH57_1895 PF00005 ABC transporter CH57_1895 PF12399 Branched-chain amino acid ATP-binding cassette transporter CH57_1896 PF02653 Branched-chain amino acid transport system / permease component CH57_1896 PF11862 Domain of unknown function (DUF3382) CH57_1897 PF02653 Branched-chain amino acid transport system / permease component CH57_1898 PF13458 Periplasmic binding protein CH57_1899 PF12568 Acetyltransferase (GNAT) domain, PanZ CH57_190 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH57_190 PF03466 LysR substrate binding domain CH57_1900 PF01797 Transposase IS200 like CH57_1901 PF04545 Sigma-70, region 4 CH57_1901 PF04542 Sigma-70 region 2 CH57_1901 PF00140 Sigma-70 factor, region 1.2 CH57_1902 PF02687 FtsX-like permease family CH57_1902 PF18075 FtsX extracellular domain CH57_1903 PF00005 ABC transporter CH57_1904 PF02881 SRP54-type protein, helical bundle domain CH57_1904 PF02881 SRP54-type protein, helical bundle domain CH57_1904 PF00448 SRP54-type protein, GTPase domain CH57_1904 PF00448 SRP54-type protein, GTPase domain CH57_1906 PF06611 Protein of unknown function (DUF1145) CH57_1909 PF07947 YhhN family CH57_1910 PF00403 Heavy-metal-associated domain CH57_1911 PF01206 Sulfurtransferase TusA CH57_1912 PF02592 Putative vitamin uptake transporter CH57_1913 PF08786 DcrB CH57_1914 PF02754 Cysteine-rich domain CH57_1914 PF13183 4Fe-4S dicluster domain CH57_1915 PF00890 FAD binding domain CH57_1916 PF04324 BFD-like [2Fe-2S] binding domain CH57_1916 PF01266 FAD dependent oxidoreductase CH57_1917 PF03009 Glycerophosphoryl diester phosphodiesterase family CH57_192 PF04285 Protein of unknown function (DUF444) CH57_1920 PF12146 Serine aminopeptidase, S33 CH57_1921 PF01810 LysE type translocator CH57_1922 PF01810 LysE type translocator CH57_1923 PF00271 Helicase conserved C-terminal domain CH57_1923 PF16124 RecQ zinc-binding CH57_1923 PF00270 DEAD/DEAH box helicase CH57_1923 PF00570 HRDC domain CH57_1923 PF09382 RQC domain CH57_1924 PF02253 Phospholipase A1 CH57_1925 PF03061 Thioesterase superfamily CH57_1926 PF00892 EamA-like transporter family CH57_1927 PF01544 CorA-like Mg2+ transporter protein CH57_1928 PF09370 Phosphoenolpyruvate hydrolase-like CH57_193 PF08298 PrkA AAA domain CH57_193 PF06798 PrkA serine protein kinase C-terminal domain CH57_1931 PF00580 UvrD/REP helicase N-terminal domain CH57_1931 PF13361 UvrD-like helicase C-terminal domain CH57_1932 PF13419 Haloacid dehalogenase-like hydrolase CH57_1933 PF00589 Phage integrase family CH57_1933 PF02899 Phage integrase, N-terminal SAM-like domain CH57_1934 PF04340 Protein of unknown function, DUF484 CH57_1935 PF01678 Diaminopimelate epimerase CH57_1936 PF13627 Prokaryotic lipoprotein-attachment site CH57_1937 PF01491 Frataxin-like domain CH57_1938 PF12633 Adenylate cyclase NT domain CH57_1938 PF01295 Adenylate cyclase, class-I CH57_1939 PF03900 Porphobilinogen deaminase, C-terminal domain CH57_1939 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain CH57_194 PF06629 MltA-interacting protein MipA CH57_1940 PF02602 Uroporphyrinogen-III synthase HemD CH57_1941 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase CH57_1942 PF07719 Tetratricopeptide repeat CH57_1942 PF07219 HemY protein N-terminus CH57_1943 PF01797 Transposase IS200 like CH57_1945 PF01695 IstB-like ATP binding protein CH57_1947 PF00665 Integrase core domain CH57_1947 PF02796 Helix-turn-helix domain of resolvase CH57_195 PF01263 Aldose 1-epimerase CH57_1953 PF00324 Amino acid permease CH57_1954 PF03808 Glycosyl transferase WecB/TagA/CpsF family CH57_1955 PF06899 WzyE protein, O-antigen assembly polymerase CH57_1956 PF07429 4-alpha-L-fucosyltransferase glycosyl transferase group 56 CH57_1957 PF01943 Polysaccharide biosynthesis protein CH57_1958 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family CH57_196 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain CH57_196 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain CH57_1960 PF00483 Nucleotidyl transferase CH57_1961 PF16363 GDP-mannose 4,6 dehydratase CH57_1962 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain CH57_1962 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain CH57_1962 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain CH57_1963 PF02350 UDP-N-acetylglucosamine 2-epimerase CH57_1964 PF02706 Chain length determinant protein CH57_1965 PF00953 Glycosyl transferase family 4 CH57_1966 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CH57_1966 PF07498 Rho termination factor, N-terminal domain CH57_1966 PF07497 Rho termination factor, RNA-binding domain CH57_1967 PF00085 Thioredoxin CH57_1968 PF00270 DEAD/DEAH box helicase CH57_1968 PF00271 Helicase conserved C-terminal domain CH57_197 PF01641 SelR domain CH57_1971 PF00580 UvrD/REP helicase N-terminal domain CH57_1971 PF13361 UvrD-like helicase C-terminal domain CH57_1974 PF00872 Transposase, Mutator family CH57_1976 PF02753 Pili assembly chaperone PapD, C-terminal domain CH57_1976 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain CH57_1977 PF00577 Outer membrane usher protein CH57_1977 PF13954 PapC N-terminal domain CH57_1977 PF13953 PapC C-terminal domain CH57_1979 PF02753 Pili assembly chaperone PapD, C-terminal domain CH57_1979 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain CH57_198 PF07023 Protein of unknown function (DUF1315) CH57_1980 PF01320 Colicin immunity protein / pyocin immunity protein CH57_1984 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain CH57_1984 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain CH57_1985 PF03466 LysR substrate binding domain CH57_1985 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH57_199 PF00857 Isochorismatase family CH57_1992 PF00585 C-terminal regulatory domain of Threonine dehydratase CH57_1992 PF00291 Pyridoxal-phosphate dependent enzyme CH57_1993 PF00920 Dehydratase family CH57_1994 PF01063 Amino-transferase class IV CH57_1996 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CH57_1996 PF00205 Thiamine pyrophosphate enzyme, central domain CH57_1996 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CH57_1997 PF01078 Magnesium chelatase, subunit ChlI CH57_1997 PF13335 Magnesium chelatase, subunit ChlI C-terminal CH57_1998 PF04219 Protein of unknown function, DUF CH57_1999 PF02653 Branched-chain amino acid transport system / permease component CH57_200 PF00710 Asparaginase, N-terminal CH57_200 PF17763 Glutaminase/Asparaginase C-terminal domain CH57_2000 PF03466 LysR substrate binding domain CH57_2000 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH57_2001 PF02653 Branched-chain amino acid transport system / permease component CH57_2002 PF00005 ABC transporter CH57_2003 PF13407 Periplasmic binding protein domain CH57_201 PF01343 Peptidase family S49 CH57_2010 PF01177 Asp/Glu/Hydantoin racemase CH57_2011 PF00593 TonB dependent receptor CH57_2011 PF07715 TonB-dependent Receptor Plug Domain CH57_2012 PF05958 tRNA (Uracil-5-)-methyltransferase CH57_2013 PF07226 Protein of unknown function (DUF1422) CH57_2014 PF00440 Bacterial regulatory proteins, tetR family CH57_2015 PF03466 LysR substrate binding domain CH57_2015 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH57_2016 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CH57_2016 PF07992 Pyridine nucleotide-disulphide oxidoreductase CH57_2017 PF00462 Glutaredoxin CH57_2017 PF08534 Redoxin CH57_2018 PF07992 Pyridine nucleotide-disulphide oxidoreductase CH57_2018 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CH57_2019 PF03544 Gram-negative bacterial TonB protein C-terminal CH57_202 PF00881 Nitroreductase family CH57_2020 PF00529 HlyD membrane-fusion protein of T1SS CH57_2021 PF00664 ABC transporter transmembrane region CH57_2021 PF00005 ABC transporter CH57_2023 PF07715 TonB-dependent Receptor Plug Domain CH57_2023 PF00593 TonB dependent receptor CH57_2025 PF00206 Lyase CH57_2025 PF14698 Argininosuccinate lyase C-terminal CH57_2026 PF00696 Amino acid kinase family CH57_2027 PF02774 Semialdehyde dehydrogenase, dimerisation domain CH57_2027 PF01118 Semialdehyde dehydrogenase, NAD binding domain CH57_2028 PF01546 Peptidase family M20/M25/M40 CH57_2028 PF07687 Peptidase dimerisation domain CH57_2029 PF00311 Phosphoenolpyruvate carboxylase CH57_203 PF02769 AIR synthase related protein, C-terminal domain CH57_203 PF00586 AIR synthase related protein, N-terminal domain CH57_2031 PF01695 IstB-like ATP binding protein CH57_2032 PF00665 Integrase core domain CH57_2032 PF02796 Helix-turn-helix domain of resolvase CH57_2034 PF13276 HTH-like domain CH57_2034 PF13333 Integrase core domain CH57_2034 PF00665 Integrase core domain CH57_2037 PF01266 FAD dependent oxidoreductase CH57_2037 PF16901 C-terminal domain of alpha-glycerophosphate oxidase CH57_2038 PF00343 Carbohydrate phosphorylase CH57_2039 PF00534 Glycosyl transferases group 1 CH57_2039 PF08323 Starch synthase catalytic domain CH57_204 PF01131 DNA topoisomerase CH57_204 PF01751 Toprim domain CH57_2040 PF00483 Nucleotidyl transferase CH57_2041 PF00128 Alpha amylase, catalytic domain CH57_2041 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) CH57_2041 PF18390 Glycogen debranching enzyme C-terminal domain CH57_2042 PF02806 Alpha amylase, C-terminal all-beta domain CH57_2042 PF00128 Alpha amylase, catalytic domain CH57_2042 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) CH57_2043 PF06580 Histidine kinase CH57_2043 PF07694 5TMR of 5TMR-LYT CH57_2044 PF02369 Bacterial Ig-like domain (group 1) CH57_2044 PF09134 Invasin, domain 3 CH57_2044 PF07979 Intimin C-type lectin domain CH57_2044 PF11924 Inverse autotransporter, beta-domain CH57_2049 PF01118 Semialdehyde dehydrogenase, NAD binding domain CH57_2049 PF02774 Semialdehyde dehydrogenase, dimerisation domain CH57_205 PF07383 Protein of unknown function (DUF1496) CH57_2050 PF01914 MarC family integral membrane protein CH57_2054 PF01202 Shikimate kinase CH57_2055 PF02447 GntP family permease CH57_2056 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family CH57_2056 PF00356 Bacterial regulatory proteins, lacI family CH57_2057 PF02678 Pirin CH57_2057 PF17954 Quercetinase C-terminal cupin domain CH57_2059 PF00486 Transcriptional regulatory protein, C terminal CH57_2059 PF00072 Response regulator receiver domain CH57_206 PF00293 NUDIX domain CH57_2061 PF01116 Fructose-bisphosphate aldolase class-II CH57_2063 PF13407 Periplasmic binding protein domain CH57_2064 PF02653 Branched-chain amino acid transport system / permease component CH57_2065 PF00005 ABC transporter CH57_2066 PF00072 Response regulator receiver domain CH57_2066 PF13188 PAS domain CH57_2066 PF08448 PAS fold CH57_2066 PF00512 His Kinase A (phospho-acceptor) domain CH57_2066 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH57_2068 PF01384 Phosphate transporter family CH57_2069 PF01797 Transposase IS200 like CH57_207 PF03372 Endonuclease/Exonuclease/phosphatase family CH57_2070 PF10625 Universal stress protein B (UspB) CH57_2071 PF00582 Universal stress protein family CH57_2072 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase CH57_2072 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain CH57_2073 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) CH57_2073 PF08548 Peptidase M10 serralysin C terminal CH57_2073 PF00413 Matrixin CH57_2074 PF04445 Putative SAM-dependent methyltransferase CH57_2075 PF01432 Peptidase family M3 CH57_2076 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ CH57_2077 PF07992 Pyridine nucleotide-disulphide oxidoreductase CH57_2077 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CH57_2078 PF13556 PucR C-terminal helix-turn-helix domain CH57_2078 PF05651 Putative sugar diacid recognition CH57_2078 PF17853 GGDEF-like domain CH57_2079 PF02447 GntP family permease CH57_208 PF03466 LysR substrate binding domain CH57_208 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH57_2080 PF02595 Glycerate kinase family CH57_2085 PF03631 Virulence factor BrkB CH57_2086 PF05170 AsmA family CH57_2087 PF02611 CDP-diacylglycerol pyrophosphatase CH57_2088 PF00563 EAL domain CH57_2089 PF01361 Tautomerase enzyme CH57_2090 PF00294 pfkB family carbohydrate kinase CH57_2091 PF00675 Insulinase (Peptidase family M16) CH57_2091 PF05193 Peptidase M16 inactive domain CH57_2093 PF00375 Sodium:dicarboxylate symporter family CH57_2095 PF06917 Periplasmic pectate lyase CH57_2096 PF06178 Oligogalacturonate-specific porin protein (KdgM) CH57_2097 PF00672 HAMP domain CH57_2097 PF00563 EAL domain CH57_2097 PF00990 Diguanylate cyclase, GGDEF domain CH57_2097 PF17154 Gammaproteobacterial periplasmic sensor domain CH57_2098 PF01270 Glycosyl hydrolases family 8 CH57_2099 PF00005 ABC transporter CH57_2099 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CH57_2100 PF00005 ABC transporter CH57_2100 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CH57_2101 PF00528 Binding-protein-dependent transport system inner membrane component CH57_2101 PF12911 N-terminal TM domain of oligopeptide transport permease C CH57_2102 PF00528 Binding-protein-dependent transport system inner membrane component CH57_2103 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CH57_2105 PF08479 POTRA domain, ShlB-type CH57_2105 PF17287 POTRA domain CH57_2105 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB CH57_2106 PF05594 Haemagluttinin repeat CH57_2106 PF04829 Pre-toxin domain with VENN motif CH57_2106 PF13332 Hemagglutinin repeat CH57_2106 PF05860 haemagglutination activity domain CH57_2109 PF07690 Major Facilitator Superfamily CH57_211 PF00551 Formyl transferase CH57_211 PF01842 ACT domain CH57_2110 PF07730 Histidine kinase CH57_2110 PF05231 MASE1 CH57_2110 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH57_2111 PF00196 Bacterial regulatory proteins, luxR family CH57_2111 PF00072 Response regulator receiver domain CH57_2112 PF08019 Phosphoethanolamine transferase EptA/EptB CH57_2112 PF00884 Sulfatase CH57_2113 PF12146 Serine aminopeptidase, S33 CH57_2114 PF00324 Amino acid permease CH57_2115 PF00221 Aromatic amino acid lyase CH57_2116 PF17392 Urocanase C-terminal domain CH57_2116 PF01175 Urocanase Rossmann-like domain CH57_2116 PF17391 Urocanase N-terminal domain CH57_2119 PF00156 Phosphoribosyl transferase domain CH57_212 PF00872 Transposase, Mutator family CH57_2122 PF01497 Periplasmic binding protein CH57_2123 PF01032 FecCD transport family CH57_2124 PF01032 FecCD transport family CH57_2126 PF00005 ABC transporter CH57_2129 PF13737 Transposase DDE domain CH57_213 PF02810 SEC-C motif CH57_2130 PF13737 Transposase DDE domain CH57_2131 PF04606 Ogr/Delta-like zinc finger CH57_2133 PF00589 Phage integrase family CH57_2133 PF13356 Arm DNA-binding domain CH57_2133 PF14659 Phage integrase, N-terminal SAM-like domain CH57_2135 PF12833 Helix-turn-helix domain CH57_2136 PF02653 Branched-chain amino acid transport system / permease component CH57_2137 PF00005 ABC transporter CH57_2138 PF13407 Periplasmic binding protein domain CH57_214 PF00072 Response regulator receiver domain CH57_2140 PF00370 FGGY family of carbohydrate kinases, N-terminal domain CH57_2140 PF02782 FGGY family of carbohydrate kinases, C-terminal domain CH57_2142 PF02753 Pili assembly chaperone PapD, C-terminal domain CH57_2142 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain CH57_2143 PF00577 Outer membrane usher protein CH57_2143 PF13953 PapC C-terminal domain CH57_2143 PF13954 PapC N-terminal domain CH57_2144 PF13954 PapC N-terminal domain CH57_2144 PF13953 PapC C-terminal domain CH57_2144 PF00577 Outer membrane usher protein CH57_2145 PF00419 Fimbrial protein CH57_2146 PF01757 Acyltransferase family CH57_2148 PF00665 Integrase core domain CH57_2148 PF13276 HTH-like domain CH57_2148 PF13333 Integrase core domain CH57_2149 PF07690 Major Facilitator Superfamily CH57_215 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain CH57_215 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain CH57_215 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain CH57_2154 PF01526 Tn3 transposase DDE domain CH57_2154 PF13700 Domain of unknown function (DUF4158) CH57_2157 PF12390 Selenocysteine synthase N terminal CH57_2157 PF03841 L-seryl-tRNA selenium transferase CH57_2158 PF04216 Protein involved in formate dehydrogenase formation CH57_2159 PF01292 Prokaryotic cytochrome b561 CH57_216 PF00816 H-NS histone family CH57_2160 PF13247 4Fe-4S dicluster domain CH57_2160 PF09163 Formate dehydrogenase N, transmembrane CH57_2161 PF01568 Molydopterin dinucleotide binding domain CH57_2161 PF00384 Molybdopterin oxidoreductase CH57_2161 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CH57_2162 PF01568 Molydopterin dinucleotide binding domain CH57_2162 PF00384 Molybdopterin oxidoreductase CH57_2162 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CH57_2163 PF02634 FdhD/NarQ family CH57_2164 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain CH57_2164 PF02777 Iron/manganese superoxide dismutases, C-terminal domain CH57_2165 PF00672 HAMP domain CH57_2165 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CH57_2165 PF02203 Tar ligand binding domain homologue CH57_2169 PF10928 Protein of unknown function (DUF2810) CH57_217 PF00265 Thymidine kinase CH57_2171 PF05068 Mannitol repressor CH57_2172 PF01232 Mannitol dehydrogenase Rossmann domain CH57_2172 PF08125 Mannitol dehydrogenase C-terminal domain CH57_2173 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit CH57_2173 PF02378 Phosphotransferase system, EIIC CH57_2173 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 CH57_2174 PF11254 Protein of unknown function (DUF3053) CH57_2175 PF05746 DALR anticodon binding domain CH57_2175 PF02092 Glycyl-tRNA synthetase beta subunit CH57_2176 PF02091 Glycyl-tRNA synthetase alpha subunit CH57_2178 PF03352 Methyladenine glycosylase CH57_218 PF01695 IstB-like ATP binding protein CH57_2180 PF00691 OmpA family CH57_2180 PF13488 Glycine zipper CH57_2182 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CH57_2182 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CH57_2183 PF00128 Alpha amylase, catalytic domain CH57_2185 PF00155 Aminotransferase class I and II CH57_2186 PF02080 TrkA-C domain CH57_2186 PF06826 Predicted Permease Membrane Region CH57_2187 PF00011 Hsp20/alpha crystallin family CH57_2188 PF00011 Hsp20/alpha crystallin family CH57_2189 PF07119 Protein of unknown function (DUF1375) CH57_219 PF00665 Integrase core domain CH57_219 PF02796 Helix-turn-helix domain of resolvase CH57_2190 PF07676 WD40-like Beta Propeller Repeat CH57_2190 PF12566 Protein of unknown function (DUF3748) CH57_2191 PF12566 Protein of unknown function (DUF3748) CH57_2191 PF07676 WD40-like Beta Propeller Repeat CH57_2192 PF13291 ACT domain CH57_2192 PF00291 Pyridoxal-phosphate dependent enzyme CH57_2193 PF02423 Ornithine cyclodeaminase/mu-crystallin family CH57_2196 PF13276 HTH-like domain CH57_2196 PF00665 Integrase core domain CH57_2196 PF13333 Integrase core domain CH57_2198 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH57_2198 PF18053 DNA gyrase B subunit insert domain CH57_2198 PF00986 DNA gyrase B subunit, carboxyl terminus CH57_2198 PF00204 DNA gyrase B CH57_2198 PF01751 Toprim domain CH57_2199 PF02463 RecF/RecN/SMC N terminal domain CH57_220 PF00171 Aldehyde dehydrogenase family CH57_220 PF00465 Iron-containing alcohol dehydrogenase CH57_2200 PF02768 DNA polymerase III beta subunit, C-terminal domain CH57_2200 PF00712 DNA polymerase III beta subunit, N-terminal domain CH57_2200 PF02767 DNA polymerase III beta subunit, central domain CH57_2201 PF00308 Bacterial dnaA protein CH57_2201 PF08299 Bacterial dnaA protein helix-turn-helix CH57_2201 PF11638 DnaA N-terminal domain CH57_2203 PF00468 Ribosomal protein L34 CH57_2204 PF00825 Ribonuclease P CH57_2205 PF01809 Putative membrane protein insertion efficiency factor CH57_2206 PF14849 YidC periplasmic domain CH57_2206 PF02096 60Kd inner membrane protein CH57_2207 PF12631 MnmE helical domain CH57_2207 PF01926 50S ribosome-binding GTPase CH57_2207 PF10396 GTP-binding protein TrmE N-terminus CH57_2208 PF12241 Trans-2-enoyl-CoA reductase catalytic region CH57_2208 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase CH57_2208 PF07055 Enoyl reductase FAD binding domain CH57_221 PF01914 MarC family integral membrane protein CH57_2211 PF00860 Permease family CH57_2212 PF13419 Haloacid dehalogenase-like hydrolase CH57_2213 PF00528 Binding-protein-dependent transport system inner membrane component CH57_2214 PF00528 Binding-protein-dependent transport system inner membrane component CH57_2215 PF00497 Bacterial extracellular solute-binding proteins, family 3 CH57_2217 PF01895 PhoU domain CH57_2218 PF00005 ABC transporter CH57_2219 PF00528 Binding-protein-dependent transport system inner membrane component CH57_222 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CH57_2220 PF00528 Binding-protein-dependent transport system inner membrane component CH57_2221 PF12849 PBP superfamily domain CH57_2222 PF01380 SIS domain CH57_2223 PF00132 Bacterial transferase hexapeptide (six repeats) CH57_2223 PF12804 MobA-like NTP transferase domain CH57_2224 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain CH57_2224 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain CH57_2225 PF02874 ATP synthase alpha/beta family, beta-barrel domain CH57_2225 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CH57_2226 PF00231 ATP synthase CH57_2227 PF00306 ATP synthase alpha/beta chain, C terminal domain CH57_2227 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CH57_2227 PF02874 ATP synthase alpha/beta family, beta-barrel domain CH57_2228 PF00213 ATP synthase delta (OSCP) subunit CH57_2229 PF00430 ATP synthase B/B' CF(0) CH57_223 PF00528 Binding-protein-dependent transport system inner membrane component CH57_2230 PF00137 ATP synthase subunit C CH57_2231 PF00119 ATP synthase A chain CH57_2232 PF03899 ATP synthase I chain CH57_2233 PF02527 rRNA small subunit methyltransferase G CH57_2234 PF13932 GidA associated domain CH57_2234 PF01134 Glucose inhibited division protein A CH57_2235 PF00258 Flavodoxin CH57_2236 PF01037 Lrp/AsnC ligand binding domain CH57_2237 PF03590 Aspartate-ammonia ligase CH57_2238 PF05762 VWA domain containing CoxE-like protein CH57_2239 PF12592 Protein of unknown function (DUF3763) CH57_2239 PF07728 AAA domain (dynein-related subfamily) CH57_2239 PF17868 AAA lid domain CH57_224 PF00528 Binding-protein-dependent transport system inner membrane component CH57_224 PF12911 N-terminal TM domain of oligopeptide transport permease C CH57_2240 PF02705 K+ potassium transporter CH57_2241 PF02705 K+ potassium transporter CH57_2242 PF05025 RbsD / FucU transport protein family CH57_2243 PF00294 pfkB family carbohydrate kinase CH57_2244 PF07690 Major Facilitator Superfamily CH57_2246 PF00392 Bacterial regulatory proteins, gntR family CH57_2246 PF07729 FCD domain CH57_225 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CH57_225 PF00005 ABC transporter CH57_2251 PF00872 Transposase, Mutator family CH57_2252 PF03205 Molybdopterin guanine dinucleotide synthesis protein B CH57_2253 PF12804 MobA-like NTP transferase domain CH57_2254 PF06288 Protein of unknown function (DUF1040) CH57_2255 PF01636 Phosphotransferase enzyme family CH57_2256 PF01323 DSBA-like thioredoxin domain CH57_2257 PF01367 5'-3' exonuclease, C-terminal SAM fold CH57_2257 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain CH57_2257 PF00476 DNA polymerase family A CH57_2257 PF01612 3'-5' exonuclease CH57_2258 PF01797 Transposase IS200 like CH57_2259 PF01926 50S ribosome-binding GTPase CH57_226 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CH57_226 PF00005 ABC transporter CH57_2260 PF04220 Der GTPase activator (YihI) CH57_2261 PF04055 Radical SAM superfamily CH57_2261 PF06969 HemN C-terminal domain CH57_2262 PF00072 Response regulator receiver domain CH57_2262 PF02954 Bacterial regulatory protein, Fis family CH57_2262 PF00158 Sigma-54 interaction domain CH57_2263 PF00512 His Kinase A (phospho-acceptor) domain CH57_2263 PF00989 PAS fold CH57_2263 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH57_2264 PF00120 Glutamine synthetase, catalytic domain CH57_2264 PF03951 Glutamine synthetase, beta-Grasp domain CH57_2266 PF13419 Haloacid dehalogenase-like hydrolase CH57_2267 PF03631 Virulence factor BrkB CH57_2268 PF02580 D-Tyr-tRNA(Tyr) deacylase CH57_2269 PF01695 IstB-like ATP binding protein CH57_2270 PF00665 Integrase core domain CH57_2270 PF02796 Helix-turn-helix domain of resolvase CH57_2271 PF00583 Acetyltransferase (GNAT) family CH57_2271 PF09500 Putative thioesterase (yiiD_Cterm) CH57_2272 PF05170 AsmA family CH57_2273 PF00860 Permease family CH57_2274 PF03616 Sodium/glutamate symporter CH57_2275 PF17191 RecG wedge domain CH57_2275 PF00271 Helicase conserved C-terminal domain CH57_2275 PF00270 DEAD/DEAH box helicase CH57_2276 PF00588 SpoU rRNA Methylase family CH57_2276 PF12105 SpoU, rRNA methylase, C-terminal CH57_2277 PF04607 Region found in RelA / SpoT proteins CH57_2277 PF13291 ACT domain CH57_2277 PF02824 TGS domain CH57_2278 PF01192 RNA polymerase Rpb6 CH57_2279 PF00625 Guanylate kinase CH57_228 PF04269 Protein of unknown function, DUF440 CH57_2280 PF03120 NAD-dependent DNA ligase OB-fold domain CH57_2280 PF01653 NAD-dependent DNA ligase adenylation domain CH57_2281 PF03458 UPF0126 domain CH57_2282 PF08340 Domain of unknown function (DUF1732) CH57_2282 PF03755 YicC-like family, N-terminal region CH57_2283 PF01138 3' exoribonuclease family, domain 1 CH57_2283 PF03725 3' exoribonuclease family, domain 2 CH57_2284 PF00156 Phosphoribosyl transferase domain CH57_2285 PF00440 Bacterial regulatory proteins, tetR family CH57_2286 PF00692 dUTPase CH57_2287 PF04127 DNA / pantothenate metabolism flavoprotein CH57_2287 PF02441 Flavoprotein CH57_2288 PF04002 RadC-like JAB domain CH57_2289 PF00830 Ribosomal L28 family CH57_229 PF13396 Phospholipase_D-nuclease N-terminal CH57_229 PF13091 PLD-like domain CH57_2290 PF00471 Ribosomal protein L33 CH57_2291 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain CH57_2291 PF06827 Zinc finger found in FPG and IleRS CH57_2291 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain CH57_2292 PF01467 Cytidylyltransferase-like CH57_2293 PF00535 Glycosyl transferase family 2 CH57_2294 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) CH57_2295 PF01075 Glycosyltransferase family 9 (heptosyltransferase) CH57_2296 PF01075 Glycosyltransferase family 9 (heptosyltransferase) CH57_2297 PF01370 NAD dependent epimerase/dehydratase family CH57_2298 PF00155 Aminotransferase class I and II CH57_2299 PF08240 Alcohol dehydrogenase GroES-like domain CH57_2299 PF00107 Zinc-binding dehydrogenase CH57_230 PF13505 Outer membrane protein beta-barrel domain CH57_2300 PF04748 Divergent polysaccharide deacetylase CH57_2301 PF04748 Divergent polysaccharide deacetylase CH57_2302 PF01551 Peptidase family M23 CH57_2303 PF01676 Metalloenzyme superfamily CH57_2303 PF06415 BPG-independent PGAM N-terminus (iPGM_N) CH57_2304 PF00581 Rhodanese-like domain CH57_2305 PF00462 Glutaredoxin CH57_2306 PF02556 Preprotein translocase subunit SecB CH57_2307 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus CH57_2307 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus CH57_2308 PF06426 Serine acetyltransferase, N-terminal CH57_2308 PF00132 Bacterial transferase hexapeptide (six repeats) CH57_2309 PF00588 SpoU rRNA Methylase family CH57_2310 PF02805 Metal binding domain of Ada CH57_2310 PF12833 Helix-turn-helix domain CH57_2310 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain CH57_2310 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain CH57_2311 PF16527 Two-component sensor protein CpxA, periplasmic domain CH57_2311 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH57_2311 PF00672 HAMP domain CH57_2311 PF00512 His Kinase A (phospho-acceptor) domain CH57_2312 PF00072 Response regulator receiver domain CH57_2312 PF00486 Transcriptional regulatory protein, C terminal CH57_2313 PF07813 LTXXQ motif family protein CH57_2314 PF04754 Putative transposase, YhgA-like CH57_2315 PF01545 Cation efflux family CH57_2315 PF16916 Dimerisation domain of Zinc Transporter CH57_2316 PF00365 Phosphofructokinase CH57_2320 PF00939 Sodium:sulfate symporter transmembrane region CH57_2321 PF03737 Aldolase/RraA CH57_2322 PF02585 GlcNAc-PI de-N-acetylase CH57_2323 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH57_2323 PF03466 LysR substrate binding domain CH57_2324 PF00121 Triosephosphate isomerase CH57_2325 PF07305 Protein of unknown function (DUF1454) CH57_2326 PF05656 Protein of unknown function (DUF805) CH57_2327 PF00970 Oxidoreductase FAD-binding domain CH57_2327 PF00175 Oxidoreductase NAD-binding domain CH57_2328 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded CH57_2329 PF02782 FGGY family of carbohydrate kinases, C-terminal domain CH57_2329 PF00370 FGGY family of carbohydrate kinases, N-terminal domain CH57_233 PF03795 YCII-related domain CH57_2330 PF00230 Major intrinsic protein CH57_2331 PF06005 Cell division protein ZapB CH57_2332 PF01797 Transposase IS200 like CH57_2333 PF03412 Peptidase C39 family CH57_2333 PF00005 ABC transporter CH57_2333 PF00664 ABC transporter transmembrane region CH57_2334 PF01695 IstB-like ATP binding protein CH57_2336 PF00665 Integrase core domain CH57_2336 PF02796 Helix-turn-helix domain of resolvase CH57_2337 PF03412 Peptidase C39 family CH57_2337 PF00005 ABC transporter CH57_2337 PF00664 ABC transporter transmembrane region CH57_2338 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CH57_2338 PF00529 HlyD membrane-fusion protein of T1SS CH57_2341 PF03737 Aldolase/RraA CH57_2342 PF01040 UbiA prenyltransferase family CH57_2343 PF00004 ATPase family associated with various cellular activities (AAA) CH57_2343 PF07724 AAA domain (Cdc48 subfamily) CH57_2343 PF10431 C-terminal, D2-small domain, of ClpB protein CH57_2344 PF00227 Proteasome subunit CH57_2345 PF05036 Sporulation related domain CH57_2346 PF00356 Bacterial regulatory proteins, lacI family CH57_2348 PF18319 PriA DNA helicase Cys-rich region (CRR) domain CH57_2348 PF00271 Helicase conserved C-terminal domain CH57_2348 PF00270 DEAD/DEAH box helicase CH57_2348 PF17764 3′ DNA-binding domain (3′BD) CH57_2348 PF18074 Primosomal protein N C-terminal domain CH57_2349 PF01197 Ribosomal protein L31 CH57_235 PF03544 Gram-negative bacterial TonB protein C-terminal CH57_2350 PF05360 yiaA/B two helix domain CH57_2351 PF01340 Met Apo-repressor, MetJ CH57_2352 PF01053 Cys/Met metabolism PLP-dependent enzyme CH57_2353 PF01053 Cys/Met metabolism PLP-dependent enzyme CH57_2354 PF03447 Homoserine dehydrogenase, NAD binding domain CH57_2354 PF00696 Amino acid kinase family CH57_2354 PF00742 Homoserine dehydrogenase CH57_2355 PF02219 Methylenetetrahydrofolate reductase CH57_2356 PF00665 Integrase core domain CH57_2356 PF13333 Integrase core domain CH57_2356 PF13276 HTH-like domain CH57_2358 PF00455 DeoR C terminal sensor domain CH57_2358 PF08220 DeoR-like helix-turn-helix domain CH57_2359 PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease CH57_2359 PF01694 Rhomboid family CH57_236 PF00872 Transposase, Mutator family CH57_2360 PF00581 Rhodanese-like domain CH57_2361 PF17874 MalT-like TPR region CH57_2361 PF00196 Bacterial regulatory proteins, luxR family CH57_2362 PF00343 Carbohydrate phosphorylase CH57_2363 PF00343 Carbohydrate phosphorylase CH57_2364 PF02446 4-alpha-glucanotransferase CH57_2365 PF01521 Iron-sulphur cluster biosynthesis CH57_2365 PF01106 NifU-like domain CH57_2366 PF00156 Phosphoribosyl transferase domain CH57_2367 PF00561 alpha/beta hydrolase fold CH57_2368 PF07338 Protein of unknown function (DUF1471) CH57_2369 PF09012 FeoC like transcriptional regulator CH57_237 PF00872 Transposase, Mutator family CH57_2370 PF07664 Ferrous iron transport protein B C terminus CH57_2370 PF17910 FeoB cytosolic helical domain CH57_2370 PF02421 Ferrous iron transport protein B CH57_2370 PF07670 Nucleoside recognition CH57_2371 PF04023 FeoA domain CH57_2372 PF16921 Tex protein YqgF-like domain CH57_2372 PF09371 Tex-like protein N-terminal domain CH57_2372 PF00575 S1 RNA binding domain CH57_2372 PF17674 HHH domain CH57_2373 PF03449 Transcription elongation factor, N-terminal CH57_2373 PF01272 Transcription elongation factor, GreA/GreB, C-term CH57_2374 PF00486 Transcriptional regulatory protein, C terminal CH57_2374 PF00072 Response regulator receiver domain CH57_2375 PF00512 His Kinase A (phospho-acceptor) domain CH57_2375 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH57_2375 PF00672 HAMP domain CH57_2376 PF01293 Phosphoenolpyruvate carboxykinase CH57_2377 PF01430 Hsp33 protein CH57_2378 PF01479 S4 domain CH57_2379 PF13419 Haloacid dehalogenase-like hydrolase CH57_238 PF03061 Thioesterase superfamily CH57_2380 PF07095 Intracellular growth attenuator protein IgaA CH57_2382 PF00293 NUDIX domain CH57_2383 PF17092 Penicillin-binding protein OB-like domain CH57_2383 PF00905 Penicillin binding protein transpeptidase domain CH57_2383 PF00912 Transglycosylase CH57_2388 PF00263 Bacterial type II and III secretion system protein CH57_2388 PF03958 Bacterial type II/III secretion system short domain CH57_2389 PF01202 Shikimate kinase CH57_239 PF04279 Intracellular septation protein A CH57_2390 PF01761 3-dehydroquinate synthase CH57_2391 PF05036 Sporulation related domain CH57_2392 PF02086 D12 class N6 adenine-specific DNA methyltransferase CH57_2393 PF00834 Ribulose-phosphate 3 epimerase family CH57_2394 PF13419 Haloacid dehalogenase-like hydrolase CH57_2395 PF00579 tRNA synthetases class I (W and Y) CH57_2396 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CH57_2396 PF14824 Sirohaem biosynthesis protein central CH57_2396 PF10414 Sirohaem synthase dimerisation region CH57_2397 PF01226 Formate/nitrite transporter CH57_2398 PF13806 Rieske-like [2Fe-2S] domain CH57_2399 PF18267 Rubredoxin NAD+ reductase C-terminal domain CH57_2399 PF07992 Pyridine nucleotide-disulphide oxidoreductase CH57_2399 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain CH57_2399 PF01077 Nitrite and sulphite reductase 4Fe-4S domain CH57_2399 PF04324 BFD-like [2Fe-2S] binding domain CH57_24 PF00872 Transposase, Mutator family CH57_2400 PF07969 Amidohydrolase family CH57_2401 PF07690 Major Facilitator Superfamily CH57_2403 PF01695 IstB-like ATP binding protein CH57_2404 PF00356 Bacterial regulatory proteins, lacI family CH57_2405 PF02056 Family 4 glycosyl hydrolase CH57_2405 PF11975 Family 4 glycosyl hydrolase C-terminal domain CH57_2406 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD CH57_2407 PF05872 Bacterial protein of unknown function (DUF853) CH57_2408 PF00117 Glutamine amidotransferase class-I CH57_2409 PF00202 Aminotransferase class-III CH57_2410 PF12805 FUSC-like inner membrane protein yccS CH57_2411 PF13545 Crp-like helix-turn-helix domain CH57_2411 PF00027 Cyclic nucleotide-binding domain CH57_2412 PF02566 OsmC-like protein CH57_2414 PF00485 Phosphoribulokinase / Uridine kinase family CH57_2415 PF06794 Uncharacterised protein family (UPF0270) CH57_2416 PF00561 alpha/beta hydrolase fold CH57_2417 PF01810 LysE type translocator CH57_2418 PF04069 Substrate binding domain of ABC-type glycine betaine transport system CH57_2419 PF00005 ABC transporter CH57_2420 PF00528 Binding-protein-dependent transport system inner membrane component CH57_2421 PF02668 Taurine catabolism dioxygenase TauD, TfdA family CH57_2423 PF00535 Glycosyl transferase family 2 CH57_2424 PF12848 ABC transporter CH57_2424 PF00005 ABC transporter CH57_2425 PF00005 ABC transporter CH57_2425 PF12848 ABC transporter CH57_2426 PF02525 Flavodoxin-like fold CH57_2427 PF02254 TrkA-N domain CH57_2427 PF00999 Sodium/hydrogen exchanger family CH57_2428 PF09526 Probable metal-binding protein (DUF2387) CH57_2429 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CH57_243 PF03922 OmpW family CH57_2430 PF04102 SlyX CH57_2431 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CH57_2431 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase CH57_2432 PF08348 YheO-like PAS domain CH57_2432 PF13309 HTH domain CH57_2433 PF02635 DsrE/DsrF-like family CH57_2434 PF02635 DsrE/DsrF-like family CH57_2435 PF04077 DsrH like protein CH57_2436 PF00164 Ribosomal protein S12/S23 CH57_2437 PF00177 Ribosomal protein S7p/S5e CH57_2438 PF00679 Elongation factor G C-terminus CH57_2438 PF14492 Elongation Factor G, domain II CH57_2438 PF03764 Elongation factor G, domain IV CH57_2438 PF00009 Elongation factor Tu GTP binding domain CH57_2438 PF03144 Elongation factor Tu domain 2 CH57_2439 PF03144 Elongation factor Tu domain 2 CH57_2439 PF03143 Elongation factor Tu C-terminal domain CH57_2439 PF00009 Elongation factor Tu GTP binding domain CH57_2440 PF01797 Transposase IS200 like CH57_2441 PF04324 BFD-like [2Fe-2S] binding domain CH57_2442 PF00210 Ferritin-like domain CH57_2443 PF00338 Ribosomal protein S10p/S20e CH57_2444 PF00297 Ribosomal protein L3 CH57_2445 PF00573 Ribosomal protein L4/L1 family CH57_2446 PF00276 Ribosomal protein L23 CH57_2447 PF03947 Ribosomal Proteins L2, C-terminal domain CH57_2447 PF00181 Ribosomal Proteins L2, RNA binding domain CH57_2448 PF00203 Ribosomal protein S19 CH57_2449 PF00237 Ribosomal protein L22p/L17e CH57_245 PF00290 Tryptophan synthase alpha chain CH57_2450 PF07650 KH domain CH57_2450 PF00189 Ribosomal protein S3, C-terminal domain CH57_2451 PF00252 Ribosomal protein L16p/L10e CH57_2452 PF00831 Ribosomal L29 protein CH57_2453 PF00366 Ribosomal protein S17 CH57_2454 PF00238 Ribosomal protein L14p/L23e CH57_2455 PF00467 KOW motif CH57_2455 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 CH57_2456 PF00281 Ribosomal protein L5 CH57_2456 PF00673 ribosomal L5P family C-terminus CH57_2457 PF00253 Ribosomal protein S14p/S29e CH57_2458 PF00410 Ribosomal protein S8 CH57_2459 PF00347 Ribosomal protein L6 CH57_246 PF00291 Pyridoxal-phosphate dependent enzyme CH57_2460 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast CH57_2461 PF00333 Ribosomal protein S5, N-terminal domain CH57_2461 PF03719 Ribosomal protein S5, C-terminal domain CH57_2462 PF00327 Ribosomal protein L30p/L7e CH57_2463 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A CH57_2464 PF00344 SecY translocase CH57_2465 PF00444 Ribosomal protein L36 CH57_2466 PF00416 Ribosomal protein S13/S18 CH57_2467 PF00411 Ribosomal protein S11 CH57_2468 PF00163 Ribosomal protein S4/S9 N-terminal domain CH57_2468 PF01479 S4 domain CH57_2469 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain CH57_2469 PF01000 RNA polymerase Rpb3/RpoA insert domain CH57_2469 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain CH57_247 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase CH57_247 PF00218 Indole-3-glycerol phosphate synthase CH57_2470 PF01196 Ribosomal protein L17 CH57_2471 PF13411 MerR HTH family regulatory protein CH57_2472 PF03889 Alternative ribosome-rescue factor A CH57_2473 PF01741 Large-conductance mechanosensitive channel, MscL CH57_2474 PF02254 TrkA-N domain CH57_2474 PF02080 TrkA-C domain CH57_2475 PF01029 NusB family CH57_2475 PF01189 16S rRNA methyltransferase RsmB/F CH57_2476 PF02911 Formyl transferase, C-terminal domain CH57_2476 PF00551 Formyl transferase CH57_2477 PF01327 Polypeptide deformylase CH57_2478 PF02481 DNA recombination-mediator protein A CH57_2478 PF17782 DprA winged helix domain CH57_2479 PF04361 Protein of unknown function (DUF494) CH57_248 PF00591 Glycosyl transferase family, a/b domain CH57_248 PF02885 Glycosyl transferase family, helical bundle domain CH57_2480 PF01396 Topoisomerase DNA binding C4 zinc finger CH57_2481 PF01300 Telomere recombination CH57_2482 PF18317 Shikimate 5'-dehydrogenase C-terminal domain CH57_2482 PF01488 Shikimate / quinate 5-dehydrogenase CH57_2482 PF08501 Shikimate dehydrogenase substrate binding domain CH57_2483 PF00132 Bacterial transferase hexapeptide (six repeats) CH57_2484 PF01695 IstB-like ATP binding protein CH57_2485 PF02796 Helix-turn-helix domain of resolvase CH57_2485 PF00665 Integrase core domain CH57_2487 PF00474 Sodium:solute symporter family CH57_2488 PF04341 Protein of unknown function, DUF485 CH57_2489 PF16177 Acetyl-coenzyme A synthetase N-terminus CH57_2489 PF00501 AMP-binding enzyme CH57_2489 PF13193 AMP-binding enzyme C-terminal domain CH57_249 PF00117 Glutamine amidotransferase class-I CH57_2490 PF00375 Sodium:dicarboxylate symporter family CH57_2491 PF00072 Response regulator receiver domain CH57_2491 PF00196 Bacterial regulatory proteins, luxR family CH57_2492 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) CH57_2492 PF00072 Response regulator receiver domain CH57_2492 PF00672 HAMP domain CH57_2492 PF01627 Hpt domain CH57_2492 PF00512 His Kinase A (phospho-acceptor) domain CH57_2492 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH57_2496 PF14525 AraC-binding-like domain CH57_2496 PF12833 Helix-turn-helix domain CH57_250 PF04715 Anthranilate synthase component I, N terminal region CH57_250 PF00425 chorismate binding enzyme CH57_2500 PF01514 Secretory protein of YscJ/FliF family CH57_2503 PF00771 FHIPEP family CH57_2504 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CH57_2504 PF18269 T3SS EscN ATPase C-terminal domain CH57_2507 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term CH57_2508 PF00813 FliP family CH57_2509 PF01313 Bacterial export proteins, family 3 CH57_251 PF02811 PHP domain CH57_2510 PF01311 Bacterial export proteins, family 1 CH57_2511 PF01312 FlhB HrpN YscU SpaS Family CH57_2512 PF04143 Sulphur transport CH57_2513 PF01206 Sulfurtransferase TusA CH57_2514 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH57_2514 PF03466 LysR substrate binding domain CH57_2515 PF03222 Tryptophan/tyrosine permease family CH57_2516 PF01053 Cys/Met metabolism PLP-dependent enzyme CH57_2517 PF00005 ABC transporter CH57_2518 PF01032 FecCD transport family CH57_2519 PF01497 Periplasmic binding protein CH57_252 PF01300 Telomere recombination CH57_2520 PF05171 Haemin-degrading HemS.ChuX domain CH57_2521 PF07715 TonB-dependent Receptor Plug Domain CH57_2521 PF00593 TonB dependent receptor CH57_2522 PF13460 NAD(P)H-binding CH57_2523 PF06228 Haem utilisation ChuX/HutX CH57_2524 PF04055 Radical SAM superfamily CH57_2528 PF15608 PELOTA RNA binding domain CH57_2528 PF11202 Phosphoribosyl transferase (PRTase) CH57_253 PF00849 RNA pseudouridylate synthase CH57_253 PF01479 S4 domain CH57_2532 PF02342 TerD domain CH57_2533 PF02342 TerD domain CH57_2534 PF05099 Tellurite resistance protein TerB CH57_2535 PF03741 Integral membrane protein TerC family CH57_2536 PF02342 TerD domain CH57_2537 PF02342 TerD domain CH57_2539 PF13954 PapC N-terminal domain CH57_2539 PF13953 PapC C-terminal domain CH57_2539 PF00577 Outer membrane usher protein CH57_254 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP CH57_2540 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain CH57_2543 PF01565 FAD binding domain CH57_2543 PF08031 Berberine and berberine like CH57_2544 PF12951 Passenger-associated-transport-repeat CH57_2545 PF04345 Chorismate lyase CH57_2546 PF01040 UbiA prenyltransferase family CH57_2547 PF01553 Acyltransferase CH57_2548 PF01219 Prokaryotic diacylglycerol kinase CH57_2549 PF01726 LexA DNA binding domain CH57_2549 PF00717 Peptidase S24-like CH57_255 PF00106 short chain dehydrogenase CH57_2550 PF01475 Ferric uptake regulator family CH57_2551 PF01207 Dihydrouridine synthase (Dus) CH57_2552 PF09583 Phage shock protein G (Phageshock_PspG) CH57_2553 PF00107 Zinc-binding dehydrogenase CH57_2553 PF08240 Alcohol dehydrogenase GroES-like domain CH57_2554 PF03796 DnaB-like helicase C terminal domain CH57_2554 PF00772 DnaB-like helicase N terminal domain CH57_2555 PF00842 Alanine racemase, C-terminal domain CH57_2555 PF01168 Alanine racemase, N-terminal domain CH57_2556 PF00155 Aminotransferase class I and II CH57_2557 PF04237 YjbR CH57_2558 PF17760 UvrA interaction domain CH57_2558 PF17755 UvrA DNA-binding domain CH57_2558 PF00005 ABC transporter CH57_2559 PF00436 Single-strand binding protein family CH57_256 PF08496 Peptidase family S49 N-terminal CH57_256 PF01343 Peptidase family S49 CH57_2560 PF05336 L-rhamnose mutarotase CH57_2561 PF00465 Iron-containing alcohol dehydrogenase CH57_2562 PF00596 Class II Aldolase and Adducin N-terminal domain CH57_2563 PF06134 L-rhamnose isomerase (RhaA) CH57_2564 PF02782 FGGY family of carbohydrate kinases, C-terminal domain CH57_2564 PF00370 FGGY family of carbohydrate kinases, N-terminal domain CH57_2567 PF12833 Helix-turn-helix domain CH57_2567 PF02311 AraC-like ligand binding domain CH57_2568 PF02311 AraC-like ligand binding domain CH57_2568 PF12833 Helix-turn-helix domain CH57_2569 PF06379 L-rhamnose-proton symport protein (RhaT) CH57_257 PF10692 Protein of unknown function (DUF2498) CH57_2575 PF07992 Pyridine nucleotide-disulphide oxidoreductase CH57_2575 PF13247 4Fe-4S dicluster domain CH57_2575 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster CH57_2576 PF12800 4Fe-4S binding domain CH57_2576 PF13247 4Fe-4S dicluster domain CH57_2577 PF01568 Molydopterin dinucleotide binding domain CH57_2577 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CH57_2577 PF00384 Molybdopterin oxidoreductase CH57_2578 PF02683 Cytochrome C biogenesis protein transmembrane region CH57_2578 PF11412 Disulphide bond corrector protein DsbC CH57_2579 PF03091 CutA1 divalent ion tolerance protein CH57_2580 PF03605 Anaerobic c4-dicarboxylate membrane transporter CH57_2581 PF00206 Lyase CH57_2581 PF10415 Fumarase C C-terminus CH57_2582 PF04186 FxsA cytoplasmic membrane protein CH57_2583 PF00166 Chaperonin 10 Kd subunit CH57_2584 PF00118 TCP-1/cpn60 chaperonin family CH57_2585 PF13698 Domain of unknown function (DUF4156) CH57_2586 PF04055 Radical SAM superfamily CH57_2587 PF08207 Elongation factor P (EF-P) KOW-like domain CH57_2587 PF01132 Elongation factor P (EF-P) OB domain CH57_2587 PF09285 Elongation factor P, C-terminal CH57_2588 PF00893 Small Multidrug Resistance protein CH57_2589 PF01797 Transposase IS200 like CH57_259 PF01751 Toprim domain CH57_259 PF01131 DNA topoisomerase CH57_259 PF08272 Topoisomerase I zinc-ribbon-like CH57_259 PF01396 Topoisomerase DNA binding C4 zinc finger CH57_2590 PF02313 Fumarate reductase subunit D CH57_2591 PF02300 Fumarate reductase subunit C CH57_2592 PF13183 4Fe-4S dicluster domain CH57_2592 PF13085 2Fe-2S iron-sulfur cluster binding domain CH57_2593 PF00890 FAD binding domain CH57_2593 PF02910 Fumarate reductase flavoprotein C-term CH57_2594 PF00152 tRNA synthetases class II (D, K and N) CH57_2595 PF00924 Mechanosensitive ion channel CH57_2595 PF12795 Mechanosensitive ion channel porin domain CH57_2595 PF12794 Mechanosensitive ion channel inner membrane domain 1 CH57_2596 PF02666 Phosphatidylserine decarboxylase CH57_2597 PF03193 RsgA GTPase CH57_2598 PF00929 Exonuclease CH57_260 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH57_260 PF03466 LysR substrate binding domain CH57_2601 PF08331 Domain of unknown function (DUF1730) CH57_2602 PF03853 YjeF-related protein N-terminus CH57_2602 PF01256 Carbohydrate kinase CH57_2603 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE CH57_2604 PF01520 N-acetylmuramoyl-L-alanine amidase CH57_2605 PF01119 DNA mismatch repair protein, C-terminal domain CH57_2605 PF08676 MutL C terminal dimerisation domain CH57_2607 PF17209 Hfq protein CH57_2608 PF16360 GTP-binding GTPase Middle Region CH57_2608 PF13167 GTP-binding GTPase N-terminal CH57_2608 PF01926 50S ribosome-binding GTPase CH57_2609 PF12221 Bacterial membrane protein N terminal CH57_2609 PF01145 SPFH domain / Band 7 family CH57_2610 PF01145 SPFH domain / Band 7 family CH57_2611 PF09838 Uncharacterized protein conserved in bacteria (DUF2065) CH57_2612 PF00709 Adenylosuccinate synthetase CH57_2613 PF02082 Transcriptional regulator CH57_2614 PF00773 RNB domain CH57_2614 PF08461 Ribonuclease R winged-helix domain CH57_2614 PF00575 S1 RNA binding domain CH57_2614 PF08206 Ribonuclease B OB domain CH57_2614 PF17876 Cold shock domain CH57_2615 PF00588 SpoU rRNA Methylase family CH57_2615 PF08032 RNA 2'-O ribose methyltransferase substrate binding CH57_2616 PF18158 Adaptive response protein AidB N-terminal domain CH57_2616 PF02770 Acyl-CoA dehydrogenase, middle domain CH57_2616 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CH57_2617 PF07338 Protein of unknown function (DUF1471) CH57_2619 PF01695 IstB-like ATP binding protein CH57_262 PF00694 Aconitase C-terminal domain CH57_262 PF00330 Aconitase family (aconitate hydratase) CH57_2621 PF00665 Integrase core domain CH57_2621 PF02796 Helix-turn-helix domain of resolvase CH57_2622 PF07728 AAA domain (dynein-related subfamily) CH57_2622 PF12102 Domain of unknown function (DUF3578) CH57_2624 PF01527 Transposase CH57_2625 PF01555 DNA methylase CH57_263 PF00925 GTP cyclohydrolase II CH57_2630 PF00665 Integrase core domain CH57_2634 PF05987 Bacterial protein of unknown function (DUF898) CH57_2636 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit CH57_2637 PF12833 Helix-turn-helix domain CH57_2638 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit CH57_264 PF01569 PAP2 superfamily CH57_2640 PF00381 PTS HPr component phosphorylation site CH57_2640 PF02896 PEP-utilising enzyme, TIM barrel domain CH57_2640 PF00391 PEP-utilising enzyme, mobile domain CH57_2640 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 CH57_2640 PF05524 PEP-utilising enzyme, N-terminal CH57_2641 PF10696 Protein of unknown function (DUF2501) CH57_2642 PF03992 Antibiotic biosynthesis monooxygenase CH57_2643 PF01791 DeoC/LacD family aldolase CH57_2644 PF13407 Periplasmic binding protein domain CH57_2645 PF02653 Branched-chain amino acid transport system / permease component CH57_2646 PF02653 Branched-chain amino acid transport system / permease component CH57_2647 PF00005 ABC transporter CH57_2648 PF04198 Putative sugar-binding domain CH57_2648 PF00325 Bacterial regulatory proteins, crp family CH57_2649 PF00325 Bacterial regulatory proteins, crp family CH57_2649 PF04198 Putative sugar-binding domain CH57_265 PF06305 Lipopolysaccharide assembly protein A domain CH57_2650 PF02782 FGGY family of carbohydrate kinases, C-terminal domain CH57_2650 PF00370 FGGY family of carbohydrate kinases, N-terminal domain CH57_2651 PF01075 Glycosyltransferase family 9 (heptosyltransferase) CH57_2654 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CH57_2655 PF00873 AcrB/AcrD/AcrF family CH57_2657 PF01095 Pectinesterase CH57_2658 PF00990 Diguanylate cyclase, GGDEF domain CH57_2659 PF07256 Protein of unknown function (DUF1435) CH57_266 PF18073 Rubredoxin metal binding domain CH57_2661 PF08468 Methyltransferase small domain N-terminal CH57_2661 PF05175 Methyltransferase small domain CH57_2662 PF03603 DNA polymerase III psi subunit CH57_2663 PF00583 Acetyltransferase (GNAT) family CH57_2664 PF00009 Elongation factor Tu GTP binding domain CH57_2664 PF03144 Elongation factor Tu domain 2 CH57_2664 PF16658 Class II release factor RF3, C-terminal domain CH57_2665 PF04972 BON domain CH57_2666 PF07043 Protein of unknown function (DUF1328) CH57_2667 PF01734 Patatin-like phospholipase CH57_2668 PF01026 TatD related DNase CH57_2669 PF07662 Na+ dependent nucleoside transporter C-terminus CH57_2669 PF01773 Na+ dependent nucleoside transporter N-terminus CH57_2669 PF07670 Nucleoside recognition CH57_2670 PF01791 DeoC/LacD family aldolase CH57_2671 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain CH57_2671 PF00591 Glycosyl transferase family, a/b domain CH57_2671 PF02885 Glycosyl transferase family, helical bundle domain CH57_2672 PF02796 Helix-turn-helix domain of resolvase CH57_2672 PF00665 Integrase core domain CH57_2673 PF01695 IstB-like ATP binding protein CH57_2674 PF02885 Glycosyl transferase family, helical bundle domain CH57_2674 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain CH57_2674 PF00591 Glycosyl transferase family, a/b domain CH57_2675 PF01676 Metalloenzyme superfamily CH57_2676 PF01048 Phosphorylase superfamily CH57_2677 PF10144 Bacterial virulence factor haemolysin CH57_2678 PF18429 Domain of unknown function (DUF5609) CH57_2679 PF18073 Rubredoxin metal binding domain CH57_268 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family CH57_2680 PF01381 Helix-turn-helix CH57_2680 PF13521 AAA domain CH57_2682 PF00005 ABC transporter CH57_2682 PF12848 ABC transporter CH57_2683 PF12848 ABC transporter CH57_2683 PF00005 ABC transporter CH57_2684 PF00691 OmpA family CH57_2685 PF17152 Periplasmic sensor domain CH57_2685 PF00990 Diguanylate cyclase, GGDEF domain CH57_2687 PF00690 Cation transporter/ATPase, N-terminus CH57_2687 PF00689 Cation transporting ATPase, C-terminus CH57_2688 PF14718 Soluble lytic murein transglycosylase L domain CH57_2688 PF01464 Transglycosylase SLT domain CH57_2689 PF01931 Protein of unknown function DUF84 CH57_269 PF01253 Translation initiation factor SUI1 CH57_2690 PF01371 Trp repressor protein CH57_2691 PF12833 Helix-turn-helix domain CH57_2691 PF06445 GyrI-like small molecule binding domain CH57_2692 PF00300 Histidine phosphatase superfamily (branch 1) CH57_2694 PF05981 CreA protein CH57_2695 PF00486 Transcriptional regulatory protein, C terminal CH57_2695 PF00072 Response regulator receiver domain CH57_2697 PF03447 Homoserine dehydrogenase, NAD binding domain CH57_2697 PF00742 Homoserine dehydrogenase CH57_2697 PF13840 ACT domain CH57_2697 PF00696 Amino acid kinase family CH57_2697 PF01842 ACT domain CH57_2698 PF08544 GHMP kinases C terminal CH57_2698 PF00288 GHMP kinases N terminal domain CH57_2699 PF14821 Threonine synthase N terminus CH57_2699 PF00291 Pyridoxal-phosphate dependent enzyme CH57_270 PF05433 Glycine zipper 2TM domain CH57_2701 PF03883 Peroxide stress protein YaaA CH57_2702 PF00923 Transaldolase/Fructose-6-phosphate aldolase CH57_2703 PF00994 Probable molybdopterin binding domain CH57_2704 PF07690 Major Facilitator Superfamily CH57_2706 PF01184 GPR1/FUN34/yaaH family CH57_2707 PF00012 Hsp70 protein CH57_2708 PF00684 DnaJ central domain CH57_2708 PF01556 DnaJ C terminal domain CH57_2708 PF00226 DnaJ domain CH57_2709 PF06965 Na+/H+ antiporter 1 CH57_271 PF00596 Class II Aldolase and Adducin N-terminal domain CH57_2710 PF03466 LysR substrate binding domain CH57_2710 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH57_2711 PF01649 Ribosomal protein S20 CH57_2712 PF06574 FAD synthetase CH57_2712 PF01687 Riboflavin kinase CH57_2713 PF08264 Anticodon-binding domain of tRNA CH57_2713 PF00133 tRNA synthetases class I (I, L, M and V) CH57_2713 PF06827 Zinc finger found in FPG and IleRS CH57_2714 PF01252 Signal peptidase (SPase) II CH57_2715 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CH57_2716 PF02401 LytB protein CH57_2717 PF01797 Transposase IS200 like CH57_2718 PF05173 Dihydrodipicolinate reductase, C-terminus CH57_2718 PF01113 Dihydrodipicolinate reductase, N-terminus CH57_2719 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain CH57_2719 PF00117 Glutamine amidotransferase class-I CH57_2720 PF02142 MGS-like domain CH57_2720 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain CH57_2720 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain CH57_2721 PF01810 LysE type translocator CH57_2722 PF06738 Putative threonine/serine exporter CH57_2723 PF12821 Threonine/Serine exporter, ThrE CH57_2724 PF00186 Dihydrofolate reductase CH57_2725 PF01797 Transposase IS200 like CH57_2727 PF00149 Calcineurin-like phosphoesterase CH57_2728 PF04379 ApaG domain CH57_2729 PF00398 Ribosomal RNA adenine dimethylase CH57_273 PF00923 Transaldolase/Fructose-6-phosphate aldolase CH57_2730 PF04166 Pyridoxal phosphate biosynthetic protein PdxA CH57_2731 PF09312 SurA N-terminal domain CH57_2731 PF00639 PPIC-type PPIASE domain CH57_2732 PF04453 LPS transport system D CH57_2732 PF03968 OstA-like protein CH57_2733 PF05099 Tellurite resistance protein TerB CH57_2733 PF00226 DnaJ domain CH57_2734 PF00849 RNA pseudouridylate synthase CH57_274 PF04328 Selenoprotein, putative CH57_2743 PF00004 ATPase family associated with various cellular activities (AAA) CH57_2743 PF10431 C-terminal, D2-small domain, of ClpB protein CH57_2743 PF07724 AAA domain (Cdc48 subfamily) CH57_2743 PF17871 AAA lid domain CH57_2744 PF04717 Type VI secretion system, phage-baseplate injector CH57_275 PF13722 5TM C-terminal transporter carbon starvation CstA CH57_275 PF02554 Carbon starvation protein CstA CH57_2752 PF05736 OprF membrane domain CH57_2752 PF00691 OmpA family CH57_2755 PF00176 SNF2 family N-terminal domain CH57_2755 PF00271 Helicase conserved C-terminal domain CH57_2755 PF12137 RNA polymerase recycling family C-terminal CH57_2755 PF18337 RapA N-terminal Tudor like domain CH57_2755 PF18339 RapA N-terminal Tudor like domain 1 CH57_2756 PF00136 DNA polymerase family B CH57_2756 PF03104 DNA polymerase family B, exonuclease domain CH57_2757 PF09335 SNARE associated Golgi protein CH57_2758 PF00005 ABC transporter CH57_2759 PF00528 Binding-protein-dependent transport system inner membrane component CH57_276 PF17876 Cold shock domain CH57_276 PF08206 Ribonuclease B OB domain CH57_276 PF00773 RNB domain CH57_276 PF00575 S1 RNA binding domain CH57_2762 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CH57_2762 PF12793 Sugar transport-related sRNA regulator N-term CH57_2763 PF07690 Major Facilitator Superfamily CH57_2764 PF01695 IstB-like ATP binding protein CH57_2766 PF00665 Integrase core domain CH57_2766 PF02796 Helix-turn-helix domain of resolvase CH57_2767 PF07690 Major Facilitator Superfamily CH57_2768 PF00694 Aconitase C-terminal domain CH57_2769 PF00330 Aconitase family (aconitate hydratase) CH57_277 PF07690 Major Facilitator Superfamily CH57_2770 PF00180 Isocitrate/isopropylmalate dehydrogenase CH57_2771 PF00682 HMGL-like CH57_2771 PF08502 LeuA allosteric (dimerisation) domain CH57_2772 PF01797 Transposase IS200 like CH57_2774 PF03466 LysR substrate binding domain CH57_2774 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH57_2775 PF00501 AMP-binding enzyme CH57_2776 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CH57_2776 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CH57_2776 PF00205 Thiamine pyrophosphate enzyme, central domain CH57_2777 PF10369 Small subunit of acetolactate synthase CH57_2778 PF01797 Transposase IS200 like CH57_2779 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family CH57_2779 PF00356 Bacterial regulatory proteins, lacI family CH57_278 PF01370 NAD dependent epimerase/dehydratase family CH57_2780 PF06610 L-alanine exporter CH57_2781 PF02381 MraZ protein, putative antitoxin-like CH57_2782 PF01795 MraW methylase family CH57_2783 PF04999 Cell division protein FtsL CH57_2784 PF03717 Penicillin-binding Protein dimerisation domain CH57_2784 PF00905 Penicillin binding protein transpeptidase domain CH57_2785 PF01225 Mur ligase family, catalytic domain CH57_2785 PF08245 Mur ligase middle domain CH57_2785 PF02875 Mur ligase family, glutamate ligase domain CH57_2786 PF01225 Mur ligase family, catalytic domain CH57_2786 PF08245 Mur ligase middle domain CH57_2786 PF02875 Mur ligase family, glutamate ligase domain CH57_2787 PF00953 Glycosyl transferase family 4 CH57_2787 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 CH57_2788 PF02875 Mur ligase family, glutamate ligase domain CH57_2788 PF08245 Mur ligase middle domain CH57_2789 PF01098 Cell cycle protein CH57_279 PF00633 Helix-hairpin-helix motif CH57_279 PF00730 HhH-GPD superfamily base excision DNA repair protein CH57_279 PF10576 Iron-sulfur binding domain of endonuclease III CH57_2790 PF03033 Glycosyltransferase family 28 N-terminal domain CH57_2790 PF04101 Glycosyltransferase family 28 C-terminal domain CH57_2791 PF01225 Mur ligase family, catalytic domain CH57_2791 PF02875 Mur ligase family, glutamate ligase domain CH57_2791 PF08245 Mur ligase middle domain CH57_2792 PF01820 D-ala D-ala ligase N-terminus CH57_2792 PF07478 D-ala D-ala ligase C-terminus CH57_2793 PF08478 POTRA domain, FtsQ-type CH57_2793 PF03799 Cell division protein FtsQ CH57_2794 PF02491 SHS2 domain inserted in FTSA CH57_2795 PF00091 Tubulin/FtsZ family, GTPase domain CH57_2795 PF12327 FtsZ family, C-terminal domain CH57_2796 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase CH57_2798 PF06558 Secretion monitor precursor protein (SecM) CH57_2799 PF02810 SEC-C motif CH57_2799 PF07517 SecA DEAD-like domain CH57_2799 PF01043 SecA preprotein cross-linking domain CH57_2799 PF07516 SecA Wing and Scaffold domain CH57_280 PF02508 Rnf-Nqr subunit, membrane protein CH57_2800 PF00293 NUDIX domain CH57_2801 PF01695 IstB-like ATP binding protein CH57_2802 PF00665 Integrase core domain CH57_2802 PF02796 Helix-turn-helix domain of resolvase CH57_2803 PF13409 Glutathione S-transferase, N-terminal domain CH57_2804 PF07681 DoxX CH57_2806 PF07332 Putative Actinobacterial Holin-X, holin superfamily III CH57_2807 PF05957 Bacterial protein of unknown function (DUF883) CH57_2809 PF13721 SecD export protein N-terminal TM region CH57_281 PF04205 FMN-binding domain CH57_2810 PF09335 SNARE associated Golgi protein CH57_2812 PF00392 Bacterial regulatory proteins, gntR family CH57_2812 PF07729 FCD domain CH57_2813 PF07690 Major Facilitator Superfamily CH57_2814 PF02614 Glucuronate isomerase CH57_2815 PF08125 Mannitol dehydrogenase C-terminal domain CH57_2815 PF01232 Mannitol dehydrogenase Rossmann domain CH57_2816 PF08666 SAF domain CH57_2816 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus CH57_2817 PF10688 Bacterial inner membrane protein CH57_2818 PF01797 Transposase IS200 like CH57_282 PF03116 NQR2, RnfD, RnfE family CH57_2820 PF00375 Sodium:dicarboxylate symporter family CH57_2821 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CH57_2822 PF01863 Protein of unknown function DUF45 CH57_2823 PF03797 Autotransporter beta-domain CH57_2824 PF05175 Methyltransferase small domain CH57_2825 PF00724 NADH:flavin oxidoreductase / NADH oxidase family CH57_2825 PF07992 Pyridine nucleotide-disulphide oxidoreductase CH57_2826 PF03729 Short repeat of unknown function (DUF308) CH57_2829 PF00092 von Willebrand factor type A domain CH57_283 PF12833 Helix-turn-helix domain CH57_283 PF06445 GyrI-like small molecule binding domain CH57_2831 PF02342 TerD domain CH57_2832 PF00092 von Willebrand factor type A domain CH57_2833 PF17287 POTRA domain CH57_2833 PF08479 POTRA domain, ShlB-type CH57_2833 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB CH57_2834 PF13332 Hemagglutinin repeat CH57_2834 PF13018 Extended Signal Peptide of Type V secretion system CH57_2834 PF04829 Pre-toxin domain with VENN motif CH57_2834 PF05860 haemagglutination activity domain CH57_2836 PF05860 haemagglutination activity domain CH57_2836 PF04829 Pre-toxin domain with VENN motif CH57_2836 PF13018 Extended Signal Peptide of Type V secretion system CH57_2836 PF13332 Hemagglutinin repeat CH57_2838 PF05860 haemagglutination activity domain CH57_2838 PF04829 Pre-toxin domain with VENN motif CH57_2838 PF13332 Hemagglutinin repeat CH57_2838 PF13018 Extended Signal Peptide of Type V secretion system CH57_284 PF13375 RnfC Barrel sandwich hybrid domain CH57_284 PF13237 4Fe-4S dicluster domain CH57_284 PF10531 SLBB domain CH57_284 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit CH57_2842 PF03459 TOBE domain CH57_2842 PF17912 MalK OB fold domain CH57_2842 PF00005 ABC transporter CH57_2843 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain CH57_2844 PF00356 Bacterial regulatory proteins, lacI family CH57_2845 PF13416 Bacterial extracellular solute-binding protein CH57_2846 PF00528 Binding-protein-dependent transport system inner membrane component CH57_2847 PF00528 Binding-protein-dependent transport system inner membrane component CH57_2849 PF01915 Glycosyl hydrolase family 3 C-terminal domain CH57_2849 PF14310 Fibronectin type III-like domain CH57_2849 PF00933 Glycosyl hydrolase family 3 N terminal domain CH57_285 PF04060 Putative Fe-S cluster CH57_2851 PF04632 Fusaric acid resistance protein family CH57_2852 PF00529 HlyD membrane-fusion protein of T1SS CH57_2852 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CH57_2859 PF01042 Endoribonuclease L-PSP CH57_286 PF02508 Rnf-Nqr subunit, membrane protein CH57_2863 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH57_2863 PF03466 LysR substrate binding domain CH57_2868 PF00665 Integrase core domain CH57_2868 PF02796 Helix-turn-helix domain of resolvase CH57_2869 PF01695 IstB-like ATP binding protein CH57_287 PF10754 Protein of unknown function (DUF2569) CH57_2876 PF04539 Sigma-70 region 3 CH57_2876 PF03979 Sigma-70 factor, region 1.1 CH57_2876 PF04546 Sigma-70, non-essential region CH57_2876 PF00140 Sigma-70 factor, region 1.2 CH57_2876 PF04545 Sigma-70, region 4 CH57_2876 PF04542 Sigma-70 region 2 CH57_2877 PF01807 CHC2 zinc finger CH57_2877 PF08275 DNA primase catalytic core, N-terminal domain CH57_2877 PF08278 DNA primase DnaG DnaB-binding CH57_2877 PF10410 DnaB-helicase binding domain of primase CH57_2878 PF01165 Ribosomal protein S21 CH57_2879 PF00814 Glycoprotease family CH57_288 PF00005 ABC transporter CH57_288 PF00664 ABC transporter transmembrane region CH57_288 PF03412 Peptidase C39 family CH57_2880 PF02660 Glycerol-3-phosphate acyltransferase CH57_2881 PF02152 Dihydroneopterin aldolase CH57_2882 PF02673 Bacitracin resistance protein BacA CH57_2883 PF01966 HD domain CH57_2883 PF12627 Probable RNA and SrmB- binding site of polymerase A CH57_2883 PF01743 Poly A polymerase head domain CH57_2884 PF08239 Bacterial SH3 domain CH57_2885 PF01928 CYTH domain CH57_2886 PF08335 GlnD PII-uridylyltransferase CH57_2886 PF03710 Glutamate-ammonia ligase adenylyltransferase CH57_2887 PF01467 Cytidylyltransferase-like CH57_2887 PF00294 pfkB family carbohydrate kinase CH57_2888 PF13520 Amino acid permease CH57_2889 PF04380 Membrane fusogenic activity CH57_289 PF13533 Biotin-lipoyl like CH57_2891 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase CH57_2892 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase CH57_2893 PF03738 Glutathionylspermidine synthase preATP-grasp CH57_2894 PF06693 Protein of unknown function (DUF1190) CH57_2896 PF02321 Outer membrane efflux protein CH57_2897 PF00293 NUDIX domain CH57_2898 PF06853 Protein of unknown function (DUF1249) CH57_2899 PF00149 Calcineurin-like phosphoesterase CH57_29 PF08242 Methyltransferase domain CH57_2900 PF05728 Uncharacterised protein family (UPF0227) CH57_2901 PF01751 Toprim domain CH57_2901 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH57_2901 PF00986 DNA gyrase B subunit, carboxyl terminus CH57_2901 PF00204 DNA gyrase B CH57_2902 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH57_2902 PF03466 LysR substrate binding domain CH57_2903 PF02525 Flavodoxin-like fold CH57_2904 PF00521 DNA gyrase/topoisomerase IV, subunit A CH57_2904 PF03989 DNA gyrase C-terminal domain, beta-propeller CH57_2905 PF01553 Acyltransferase CH57_2906 PF07732 Multicopper oxidase CH57_2906 PF07731 Multicopper oxidase CH57_2907 PF04055 Radical SAM superfamily CH57_2907 PF08497 Radical SAM N-terminal CH57_2907 PF11842 Domain of unknown function (DUF3362) CH57_2908 PF04055 Radical SAM superfamily CH57_2908 PF08497 Radical SAM N-terminal CH57_2908 PF11842 Domain of unknown function (DUF3362) CH57_2909 PF00248 Aldo/keto reductase family CH57_291 PF00005 ABC transporter CH57_291 PF03412 Peptidase C39 family CH57_291 PF00664 ABC transporter transmembrane region CH57_2910 PF00465 Iron-containing alcohol dehydrogenase CH57_2911 PF06719 AraC-type transcriptional regulator N-terminus CH57_2911 PF12833 Helix-turn-helix domain CH57_2912 PF09335 SNARE associated Golgi protein CH57_2913 PF01053 Cys/Met metabolism PLP-dependent enzyme CH57_2914 PF01618 MotA/TolQ/ExbB proton channel family CH57_2916 PF02472 Biopolymer transport protein ExbD/TolR CH57_2923 PF00437 Type II/IV secretion system protein CH57_2926 PF13629 Pilus formation protein N terminal region CH57_2926 PF00263 Bacterial type II and III secretion system protein CH57_2926 PF04972 BON domain CH57_2927 PF13629 Pilus formation protein N terminal region CH57_2927 PF00263 Bacterial type II and III secretion system protein CH57_2927 PF04972 BON domain CH57_293 PF11762 L-arabinose isomerase C-terminal domain CH57_293 PF02610 L-arabinose isomerase CH57_2931 PF01797 Transposase IS200 like CH57_2932 PF00577 Outer membrane usher protein CH57_2932 PF13954 PapC N-terminal domain CH57_2932 PF13953 PapC C-terminal domain CH57_2933 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain CH57_2933 PF02753 Pili assembly chaperone PapD, C-terminal domain CH57_2934 PF09222 Fimbrial adhesin F17-AG, lectin domain CH57_2934 PF00419 Fimbrial protein CH57_2935 PF01497 Periplasmic binding protein CH57_294 PF02782 FGGY family of carbohydrate kinases, C-terminal domain CH57_2940 PF01312 FlhB HrpN YscU SpaS Family CH57_2941 PF01311 Bacterial export proteins, family 1 CH57_2942 PF01313 Bacterial export proteins, family 3 CH57_2943 PF00813 FliP family CH57_2944 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term CH57_2946 PF00072 Response regulator receiver domain CH57_2946 PF02954 Bacterial regulatory protein, Fis family CH57_2946 PF00158 Sigma-54 interaction domain CH57_2947 PF02049 Flagellar hook-basal body complex protein FliE CH57_2948 PF01514 Secretory protein of YscJ/FliF family CH57_2948 PF08345 Flagellar M-ring protein C-terminal CH57_295 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family CH57_2951 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CH57_2951 PF18269 T3SS EscN ATPase C-terminal domain CH57_2955 PF13144 Chaperone for flagella basal body P-ring formation CH57_2956 PF00460 Flagella basal body rod protein CH57_2957 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CH57_2957 PF00460 Flagella basal body rod protein CH57_2958 PF03963 Flagellar hook capping protein - N-terminal region CH57_2958 PF13860 FlgD Ig-like domain CH57_2958 PF13861 FlgD Tudor-like domain CH57_2959 PF07559 Flagellar basal body protein FlaE CH57_2959 PF00460 Flagella basal body rod protein CH57_2959 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CH57_296 PF00005 ABC transporter CH57_2961 PF01797 Transposase IS200 like CH57_2962 PF00460 Flagella basal body rod protein CH57_2962 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CH57_2963 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CH57_2963 PF00460 Flagella basal body rod protein CH57_2964 PF02107 Flagellar L-ring protein CH57_2965 PF02119 Flagellar P-ring protein CH57_2967 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CH57_2967 PF00460 Flagella basal body rod protein CH57_297 PF02653 Branched-chain amino acid transport system / permease component CH57_2971 PF00486 Transcriptional regulatory protein, C terminal CH57_2971 PF18500 CadC C-terminal domain 1 CH57_2972 PF00669 Bacterial flagellin N-terminal helical region CH57_2972 PF00700 Bacterial flagellin C-terminal helical region CH57_2973 PF00669 Bacterial flagellin N-terminal helical region CH57_2973 PF00700 Bacterial flagellin C-terminal helical region CH57_2974 PF00700 Bacterial flagellin C-terminal helical region CH57_2974 PF00669 Bacterial flagellin N-terminal helical region CH57_2975 PF02465 Flagellar hook-associated protein 2 N-terminus CH57_2975 PF07195 Flagellar hook-associated protein 2 C-terminus CH57_2975 PF07196 Flagellin hook IN motif CH57_298 PF02311 AraC-like ligand binding domain CH57_298 PF12833 Helix-turn-helix domain CH57_2980 PF04545 Sigma-70, region 4 CH57_2980 PF04542 Sigma-70 region 2 CH57_2981 PF01618 MotA/TolQ/ExbB proton channel family CH57_2982 PF00691 OmpA family CH57_2982 PF13677 Membrane MotB of proton-channel complex MotA/MotB CH57_2986 PF05433 Glycine zipper 2TM domain CH57_2987 PF05433 Glycine zipper 2TM domain CH57_299 PF02894 Oxidoreductase family, C-terminal alpha/beta domain CH57_299 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CH57_2990 PF13333 Integrase core domain CH57_2990 PF13276 HTH-like domain CH57_2990 PF00665 Integrase core domain CH57_2991 PF00356 Bacterial regulatory proteins, lacI family CH57_2992 PF00939 Sodium:sulfate symporter transmembrane region CH57_2995 PF03527 RHS protein CH57_2995 PF05593 RHS Repeat CH57_2997 PF04717 Type VI secretion system, phage-baseplate injector CH57_2998 PF12951 Passenger-associated-transport-repeat CH57_300 PF13593 SBF-like CPA transporter family (DUF4137) CH57_3000 PF02447 GntP family permease CH57_3004 PF00005 ABC transporter CH57_3004 PF00664 ABC transporter transmembrane region CH57_3005 PF00005 ABC transporter CH57_3005 PF00664 ABC transporter transmembrane region CH57_3005 PF08021 Siderophore-interacting FAD-binding domain CH57_3005 PF04954 Siderophore-interacting protein CH57_3007 PF00975 Thioesterase domain CH57_3010 PF00668 Condensation domain CH57_3010 PF08242 Methyltransferase domain CH57_3010 PF00550 Phosphopantetheine attachment site CH57_3010 PF00501 AMP-binding enzyme CH57_3011 PF13193 AMP-binding enzyme C-terminal domain CH57_3011 PF00668 Condensation domain CH57_3011 PF00501 AMP-binding enzyme CH57_3012 PF00501 AMP-binding enzyme CH57_3012 PF00668 Condensation domain CH57_3012 PF08242 Methyltransferase domain CH57_3012 PF00550 Phosphopantetheine attachment site CH57_3013 PF01695 IstB-like ATP binding protein CH57_3014 PF00665 Integrase core domain CH57_3014 PF02796 Helix-turn-helix domain of resolvase CH57_3017 PF00303 Thymidylate synthase CH57_3018 PF01790 Prolipoprotein diacylglyceryl transferase CH57_3019 PF02896 PEP-utilising enzyme, TIM barrel domain CH57_3019 PF00391 PEP-utilising enzyme, mobile domain CH57_3019 PF05524 PEP-utilising enzyme, N-terminal CH57_3019 PF01590 GAF domain CH57_302 PF06097 Bacterial protein of unknown function (DUF945) CH57_3020 PF00293 NUDIX domain CH57_3021 PF02976 DNA mismatch repair enzyme MutH CH57_3022 PF00248 Aldo/keto reductase family CH57_3025 PF07690 Major Facilitator Superfamily CH57_3026 PF01553 Acyltransferase CH57_3026 PF00501 AMP-binding enzyme CH57_3026 PF13193 AMP-binding enzyme C-terminal domain CH57_3027 PF01568 Molydopterin dinucleotide binding domain CH57_3027 PF00384 Molybdopterin oxidoreductase CH57_3028 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain CH57_3028 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain CH57_3029 PF00356 Bacterial regulatory proteins, lacI family CH57_303 PF01238 Phosphomannose isomerase type I CH57_3030 PF07690 Major Facilitator Superfamily CH57_3031 PF03466 LysR substrate binding domain CH57_3031 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH57_3032 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH57_3032 PF03466 LysR substrate binding domain CH57_3034 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CH57_3034 PF00672 HAMP domain CH57_3034 PF02203 Tar ligand binding domain homologue CH57_3039 PF06750 Bacterial Peptidase A24 N-terminal domain CH57_3039 PF01478 Type IV leader peptidase family CH57_304 PF00206 Lyase CH57_304 PF10415 Fumarase C C-terminus CH57_3046 PF08334 Type II secretion system (T2SS), protein G CH57_3046 PF07963 Prokaryotic N-terminal methylation motif CH57_3047 PF00482 Type II secretion system (T2SS), protein F CH57_305 PF05472 DNA replication terminus site-binding protein (Ter protein) CH57_3050 PF03958 Bacterial type II/III secretion system short domain CH57_3050 PF00263 Bacterial type II and III secretion system protein CH57_3053 PF00484 Carbonic anhydrase CH57_3057 PF09092 Lyase, N terminal CH57_3057 PF09093 Lyase, catalytic CH57_3057 PF02884 Polysaccharide lyase family 8, C-terminal beta-sandwich domain CH57_3057 PF02278 Polysaccharide lyase family 8, super-sandwich domain CH57_3058 PF01695 IstB-like ATP binding protein CH57_306 PF07690 Major Facilitator Superfamily CH57_3062 PF01797 Transposase IS200 like CH57_3063 PF00884 Sulfatase CH57_3064 PF08220 DeoR-like helix-turn-helix domain CH57_3064 PF00455 DeoR C terminal sensor domain CH57_3065 PF08013 Tagatose 6 phosphate kinase CH57_3066 PF01380 SIS domain CH57_3067 PF03830 PTS system sorbose subfamily IIB component CH57_3068 PF03609 PTS system sorbose-specific iic component CH57_3069 PF03613 PTS system mannose/fructose/sorbose family IID component CH57_307 PF03466 LysR substrate binding domain CH57_307 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH57_3070 PF03610 PTS system fructose IIA component CH57_3071 PF01979 Amidohydrolase family CH57_3074 PF13186 Iron-sulfur cluster-binding domain CH57_3074 PF04055 Radical SAM superfamily CH57_3075 PF00884 Sulfatase CH57_3077 PF01116 Fructose-bisphosphate aldolase class-II CH57_308 PF00480 ROK family CH57_3080 PF00356 Bacterial regulatory proteins, lacI family CH57_3081 PF07690 Major Facilitator Superfamily CH57_3082 PF17137 Domain of unknown function (DUF5110) CH57_3082 PF01055 Glycosyl hydrolases family 31 CH57_3082 PF16338 Domain of unknown function (DUF4968) CH57_3082 PF13802 Galactose mutarotase-like CH57_3083 PF00356 Bacterial regulatory proteins, lacI family CH57_3084 PF02264 LamB porin CH57_3085 PF02378 Phosphotransferase system, EIIC CH57_3085 PF00367 phosphotransferase system, EIIB CH57_3086 PF08533 Beta-galactosidase C-terminal domain CH57_3086 PF08532 Beta-galactosidase trimerisation domain CH57_3086 PF02449 Beta-galactosidase CH57_3087 PF07745 Glycosyl hydrolase family 53 CH57_3088 PF00528 Binding-protein-dependent transport system inner membrane component CH57_3089 PF00528 Binding-protein-dependent transport system inner membrane component CH57_3090 PF13416 Bacterial extracellular solute-binding protein CH57_3091 PF00005 ABC transporter CH57_3091 PF17912 MalK OB fold domain CH57_3092 PF00005 ABC transporter CH57_3093 PF02653 Branched-chain amino acid transport system / permease component CH57_3094 PF13407 Periplasmic binding protein domain CH57_3096 PF05708 Permuted papain-like amidase enzyme, YaeF/YiiX, C92 family CH57_3097 PF03551 Transcriptional regulator PadR-like family CH57_311 PF00654 Voltage gated chloride channel CH57_3114 PF15731 Antitoxin component of bacterial toxin-antitoxin system, MqsA CH57_3115 PF15723 Motility quorum-sensing regulator, toxin of MqsA CH57_3119 PF00589 Phage integrase family CH57_3119 PF13356 Arm DNA-binding domain CH57_3119 PF14659 Phage integrase, N-terminal SAM-like domain CH57_3121 PF01336 OB-fold nucleic acid binding domain CH57_3121 PF00152 tRNA synthetases class II (D, K and N) CH57_3122 PF00472 RF-1 domain CH57_3122 PF03462 PCRF domain CH57_3123 PF17768 RecJ OB domain CH57_3123 PF01368 DHH family CH57_3123 PF02272 DHHA1 domain CH57_3124 PF10411 Disulfide bond isomerase protein N-terminus CH57_3124 PF13098 Thioredoxin-like domain CH57_3125 PF02899 Phage integrase, N-terminal SAM-like domain CH57_3125 PF00589 Phage integrase family CH57_3126 PF00258 Flavodoxin CH57_3127 PF06123 Inner membrane protein CreD CH57_3128 PF00672 HAMP domain CH57_3128 PF00512 His Kinase A (phospho-acceptor) domain CH57_3128 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH57_3129 PF00072 Response regulator receiver domain CH57_3129 PF00486 Transcriptional regulatory protein, C terminal CH57_3130 PF03937 Flavinator of succinate dehydrogenase CH57_3131 PF01571 Aminomethyltransferase folate-binding domain CH57_3133 PF03006 Haemolysin-III related CH57_3135 PF13018 Extended Signal Peptide of Type V secretion system CH57_3135 PF03895 YadA-like membrane anchor domain CH57_3135 PF05658 Head domain of trimeric autotransporter adhesin CH57_3135 PF05662 Coiled stalk of trimeric autotransporter adhesin CH57_3138 PF02347 Glycine cleavage system P-protein CH57_3139 PF01597 Glycine cleavage H-protein CH57_3140 PF08669 Glycine cleavage T-protein C-terminal barrel domain CH57_3140 PF01571 Aminomethyltransferase folate-binding domain CH57_3141 PF01494 FAD binding domain CH57_3142 PF01494 FAD binding domain CH57_3143 PF05195 Aminopeptidase P, N-terminal domain CH57_3143 PF00557 Metallopeptidase family M24 CH57_3144 PF03695 Uncharacterised protein family (UPF0149) CH57_3145 PF05164 Cell division protein ZapA CH57_3146 PF01812 5-formyltetrahydrofolate cyclo-ligase family CH57_3147 PF01842 ACT domain CH57_3147 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CH57_3147 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CH57_3148 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) CH57_3149 PF03466 LysR substrate binding domain CH57_3149 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH57_3150 PF04402 Protein of unknown function (DUF541) CH57_3151 PF01810 LysE type translocator CH57_3152 PF00924 Mechanosensitive ion channel CH57_3152 PF05552 Conserved TM helix CH57_3153 PF01116 Fructose-bisphosphate aldolase class-II CH57_3154 PF00162 Phosphoglycerate kinase CH57_3155 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain CH57_3155 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain CH57_3156 PF01695 IstB-like ATP binding protein CH57_3157 PF02796 Helix-turn-helix domain of resolvase CH57_3157 PF00665 Integrase core domain CH57_3158 PF01797 Transposase IS200 like CH57_3159 PF02779 Transketolase, pyrimidine binding domain CH57_3159 PF02780 Transketolase, C-terminal domain CH57_3159 PF00456 Transketolase, thiamine diphosphate binding domain CH57_3160 PF01435 Peptidase family M48 CH57_3162 PF17810 Arginine decarboxylase helical bundle domain CH57_3162 PF17944 Arginine decarboxylase C-terminal helical extension CH57_3162 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain CH57_3164 PF00438 S-adenosylmethionine synthetase, N-terminal domain CH57_3164 PF02773 S-adenosylmethionine synthetase, C-terminal domain CH57_3164 PF02772 S-adenosylmethionine synthetase, central domain CH57_3165 PF10263 SprT-like family CH57_3165 PF17283 SprT-like zinc ribbon domain CH57_3166 PF04231 Endonuclease I CH57_3167 PF04452 RNA methyltransferase CH57_3168 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain CH57_3168 PF02951 Prokaryotic glutathione synthetase, N-terminal domain CH57_3169 PF02622 Uncharacterized ACR, COG1678 CH57_3170 PF03652 Holliday junction resolvase CH57_3171 PF00795 Carbon-nitrogen hydrolase CH57_3172 PF04371 Porphyromonas-type peptidyl-arginine deiminase CH57_3173 PF00437 Type II/IV secretion system protein CH57_3174 PF01168 Alanine racemase, N-terminal domain CH57_3175 PF14748 Pyrroline-5-carboxylate reductase dimerisation CH57_3175 PF03807 NADP oxidoreductase coenzyme F420-dependent CH57_3176 PF02325 YGGT family CH57_3177 PF02594 Uncharacterised ACR, YggU family COG1872 CH57_3178 PF01725 Ham1 family CH57_3179 PF04055 Radical SAM superfamily CH57_3179 PF06969 HemN C-terminal domain CH57_3180 PF12146 Serine aminopeptidase, S33 CH57_3180 PF07634 RtxA repeat CH57_3180 PF11647 Membrane Localization Domain CH57_3180 PF16671 Actin cross-linking domain CH57_3180 PF11713 Peptidase C80 family CH57_3181 PF11101 Protein of unknown function (DUF2884) CH57_3182 PF11101 Protein of unknown function (DUF2884) CH57_3183 PF04960 Glutaminase CH57_3184 PF04320 Protein with unknown function (DUF469) CH57_3185 PF02390 Putative methyltransferase CH57_3186 PF14815 NUDIX domain CH57_3186 PF00730 HhH-GPD superfamily base excision DNA repair protein CH57_3186 PF00633 Helix-hairpin-helix motif CH57_3186 PF10576 Iron-sulfur binding domain of endonuclease III CH57_3187 PF04362 Bacterial Fe(2+) trafficking CH57_3188 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain CH57_3188 PF01464 Transglycosylase SLT domain CH57_3190 PF07715 TonB-dependent Receptor Plug Domain CH57_3191 PF02653 Branched-chain amino acid transport system / permease component CH57_3192 PF00005 ABC transporter CH57_3193 PF13407 Periplasmic binding protein domain CH57_3194 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain CH57_3194 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain CH57_3194 PF01276 Orn/Lys/Arg decarboxylase, major domain CH57_3196 PF00589 Phage integrase family CH57_3196 PF02899 Phage integrase, N-terminal SAM-like domain CH57_3198 PF03400 IS1 transposase CH57_3199 PF12759 InsA C-terminal domain CH57_3199 PF03811 InsA N-terminal domain CH57_3203 PF12759 InsA C-terminal domain CH57_3203 PF03811 InsA N-terminal domain CH57_3206 PF07724 AAA domain (Cdc48 subfamily) CH57_3206 PF00004 ATPase family associated with various cellular activities (AAA) CH57_3206 PF10431 C-terminal, D2-small domain, of ClpB protein CH57_3206 PF17871 AAA lid domain CH57_3208 PF05736 OprF membrane domain CH57_3208 PF00691 OmpA family CH57_321 PF05707 Zonular occludens toxin (Zot) CH57_3215 PF03811 InsA N-terminal domain CH57_3215 PF12759 InsA C-terminal domain CH57_3217 PF02517 CPBP intramembrane metalloprotease CH57_3219 PF00196 Bacterial regulatory proteins, luxR family CH57_3219 PF03472 Autoinducer binding domain CH57_3220 PF00765 Autoinducer synthase CH57_3224 PF04183 IucA / IucC family CH57_3224 PF06276 Ferric iron reductase FhuF-like transporter CH57_3225 PF06276 Ferric iron reductase FhuF-like transporter CH57_3225 PF04183 IucA / IucC family CH57_3227 PF04183 IucA / IucC family CH57_3227 PF06276 Ferric iron reductase FhuF-like transporter CH57_3228 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) CH57_3229 PF00593 TonB dependent receptor CH57_3229 PF07715 TonB-dependent Receptor Plug Domain CH57_3232 PF13333 Integrase core domain CH57_3232 PF00665 Integrase core domain CH57_3232 PF13276 HTH-like domain CH57_3233 PF00990 Diguanylate cyclase, GGDEF domain CH57_3233 PF00563 EAL domain CH57_3233 PF13188 PAS domain CH57_3233 PF03707 Bacterial signalling protein N terminal repeat CH57_3235 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CH57_3235 PF00529 HlyD membrane-fusion protein of T1SS CH57_3236 PF00873 AcrB/AcrD/AcrF family CH57_3237 PF07906 ShET2 enterotoxin, N-terminal region CH57_3239 PF03797 Autotransporter beta-domain CH57_3240 PF14496 C-terminal novel E3 ligase, LRR-interacting CH57_3240 PF12468 Type III secretion system leucine rich repeat protein CH57_3241 PF12468 Type III secretion system leucine rich repeat protein CH57_3241 PF12468 Type III secretion system leucine rich repeat protein CH57_3241 PF14496 C-terminal novel E3 ligase, LRR-interacting CH57_3241 PF14496 C-terminal novel E3 ligase, LRR-interacting CH57_3242 PF14496 C-terminal novel E3 ligase, LRR-interacting CH57_3242 PF12468 Type III secretion system leucine rich repeat protein CH57_3243 PF03806 AbgT putative transporter family CH57_3244 PF01546 Peptidase family M20/M25/M40 CH57_3244 PF07687 Peptidase dimerisation domain CH57_3245 PF07715 TonB-dependent Receptor Plug Domain CH57_3245 PF00593 TonB dependent receptor CH57_3246 PF00668 Condensation domain CH57_3246 PF00202 Aminotransferase class-III CH57_3246 PF13193 AMP-binding enzyme C-terminal domain CH57_3246 PF00501 AMP-binding enzyme CH57_3246 PF16197 Ketoacyl-synthetase C-terminal extension CH57_3246 PF00550 Phosphopantetheine attachment site CH57_3246 PF00109 Beta-ketoacyl synthase, N-terminal domain CH57_3246 PF02801 Beta-ketoacyl synthase, C-terminal domain CH57_3247 PF00665 Integrase core domain CH57_3247 PF02796 Helix-turn-helix domain of resolvase CH57_3248 PF01695 IstB-like ATP binding protein CH57_3252 PF17946 RecC C-terminal domain CH57_3253 PF00675 Insulinase (Peptidase family M16) CH57_3253 PF16187 Middle or third domain of peptidase_M16 CH57_3253 PF05193 Peptidase M16 inactive domain CH57_3254 PF12705 PD-(D/E)XK nuclease superfamily CH57_3254 PF00580 UvrD/REP helicase N-terminal domain CH57_3254 PF13361 UvrD-like helicase C-terminal domain CH57_3255 PF13538 UvrD-like helicase C-terminal domain CH57_3256 PF00583 Acetyltransferase (GNAT) family CH57_3256 PF00696 Amino acid kinase family CH57_3257 PF01520 N-acetylmuramoyl-L-alanine amidase CH57_3257 PF11741 AMIN domain CH57_3260 PF03562 MltA specific insert domain CH57_3260 PF06725 3D domain CH57_3261 PF00899 ThiF family CH57_3262 PF02657 Fe-S metabolism associated domain CH57_3263 PF00266 Aminotransferase class-V CH57_3265 PF03466 LysR substrate binding domain CH57_3265 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH57_3266 PF04241 Protein of unknown function (DUF423) CH57_3267 PF18125 RlmM ferredoxin-like domain CH57_3267 PF01728 FtsJ-like methyltransferase CH57_3268 PF01367 5'-3' exonuclease, C-terminal SAM fold CH57_3268 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain CH57_3269 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases CH57_3269 PF11892 Domain of unknown function (DUF3412) CH57_3269 PF03641 Possible lysine decarboxylase CH57_3270 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term CH57_3270 PF14489 QueF-like protein CH57_3271 PF07348 Syd protein (SUKH-2) CH57_3272 PF01797 Transposase IS200 like CH57_3273 PF04287 tRNA pseudouridine synthase C CH57_3274 PF00849 RNA pseudouridylate synthase CH57_3275 PF00258 Flavodoxin CH57_3276 PF11944 Protein of unknown function (DUF3461) CH57_3277 PF00132 Bacterial transferase hexapeptide (six repeats) CH57_3277 PF14602 Hexapeptide repeat of succinyl-transferase CH57_3277 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal CH57_3278 PF01909 Nucleotidyltransferase domain CH57_3278 PF08335 GlnD PII-uridylyltransferase CH57_3278 PF01842 ACT domain CH57_3278 PF01966 HD domain CH57_3279 PF00557 Metallopeptidase family M24 CH57_3280 PF00318 Ribosomal protein S2 CH57_3281 PF00889 Elongation factor TS CH57_3282 PF00696 Amino acid kinase family CH57_3283 PF01765 Ribosome recycling factor CH57_3284 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain CH57_3284 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase CH57_3284 PF13288 DXP reductoisomerase C-terminal domain CH57_3285 PF01255 Putative undecaprenyl diphosphate synthase CH57_3287 PF02163 Peptidase family M50 CH57_3287 PF17820 PDZ domain CH57_3288 PF01103 Surface antigen CH57_3288 PF07244 Surface antigen variable number repeat CH57_3289 PF03938 Outer membrane protein (OmpH-like) CH57_3290 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD CH57_3290 PF00132 Bacterial transferase hexapeptide (six repeats) CH57_3291 PF07977 FabA-like domain CH57_3292 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 CH57_3292 PF00132 Bacterial transferase hexapeptide (six repeats) CH57_3293 PF02684 Lipid-A-disaccharide synthetase CH57_3294 PF01351 Ribonuclease HII CH57_3295 PF02811 PHP domain CH57_3295 PF07733 Bacterial DNA polymerase III alpha NTPase domain CH57_3295 PF01336 OB-fold nucleic acid binding domain CH57_3295 PF17657 Bacterial DNA polymerase III alpha subunit finger domain CH57_3295 PF14579 Helix-hairpin-helix motif CH57_3296 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit CH57_3297 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CH57_3298 PF01171 PP-loop family CH57_3298 PF11734 TilS substrate C-terminal domain CH57_3298 PF09179 TilS substrate binding domain CH57_3299 PF00034 Cytochrome c CH57_3300 PF07073 Modulator of Rho-dependent transcription termination (ROF) CH57_3301 PF06786 Uncharacterised protein family (UPF0253) CH57_3302 PF07152 YaeQ protein CH57_3303 PF00472 RF-1 domain CH57_3304 PF17185 NlpE C-terminal OB domain CH57_3304 PF04170 NlpE N-terminal domain CH57_3305 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CH57_3305 PF03129 Anticodon binding domain CH57_3305 PF04073 Aminoacyl-tRNA editing domain CH57_3306 PF18389 TrmO C-terminal domain CH57_3306 PF01980 tRNA-methyltransferase O CH57_3307 PF16358 RcsF lipoprotein CH57_3308 PF03180 NLPA lipoprotein CH57_3309 PF00528 Binding-protein-dependent transport system inner membrane component CH57_3310 PF00005 ABC transporter CH57_3310 PF09383 NIL domain CH57_3317 PF00248 Aldo/keto reductase family CH57_3319 PF03372 Endonuclease/Exonuclease/phosphatase family CH57_3320 PF01464 Transglycosylase SLT domain CH57_3320 PF01476 LysM domain CH57_3321 PF16123 Hydroxyacylglutathione hydrolase C-terminus CH57_3321 PF00753 Metallo-beta-lactamase superfamily CH57_3322 PF08241 Methyltransferase domain CH57_3323 PF00075 RNase H CH57_3324 PF00929 Exonuclease CH57_3326 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin CH57_3329 PF01695 IstB-like ATP binding protein CH57_3330 PF00665 Integrase core domain CH57_3330 PF02796 Helix-turn-helix domain of resolvase CH57_3332 PF05973 Phage derived protein Gp49-like (DUF891) CH57_334 PF05707 Zonular occludens toxin (Zot) CH57_3342 PF13356 Arm DNA-binding domain CH57_3342 PF00589 Phage integrase family CH57_3343 PF01797 Transposase IS200 like CH57_3344 PF01668 SmpB protein CH57_3345 PF03364 Polyketide cyclase / dehydrase and lipid transport CH57_3346 PF03658 RnfH family Ubiquitin CH57_3347 PF04355 SmpA / OmlA family CH57_3348 PF02463 RecF/RecN/SMC N terminal domain CH57_3349 PF01513 ATP-NAD kinase CH57_3350 PF01025 GrpE CH57_3351 PF00285 Citrate synthase, C-terminal domain CH57_3352 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit CH57_3353 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit CH57_3354 PF02910 Fumarate reductase flavoprotein C-term CH57_3354 PF00890 FAD binding domain CH57_3355 PF13085 2Fe-2S iron-sulfur cluster binding domain CH57_3356 PF16078 2-oxoglutarate dehydrogenase N-terminus CH57_3356 PF02779 Transketolase, pyrimidine binding domain CH57_3356 PF16870 2-oxoglutarate dehydrogenase C-terminal CH57_3356 PF00676 Dehydrogenase E1 component CH57_3357 PF00364 Biotin-requiring enzyme CH57_3357 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) CH57_3357 PF02817 e3 binding domain CH57_3358 PF00549 CoA-ligase CH57_3358 PF08442 ATP-grasp domain CH57_3359 PF02629 CoA binding domain CH57_3359 PF00549 CoA-ligase CH57_3360 PF01654 Cytochrome bd terminal oxidase subunit I CH57_3361 PF02322 Cytochrome bd terminal oxidase subunit II CH57_3362 PF08173 Membrane bound YbgT-like protein CH57_3363 PF09600 Cyd operon protein YbgE (Cyd_oper_YbgE) CH57_3364 PF03061 Thioesterase superfamily CH57_3365 PF01618 MotA/TolQ/ExbB proton channel family CH57_3366 PF02472 Biopolymer transport protein ExbD/TolR CH57_3367 PF06519 TolA C-terminal CH57_3367 PF06519 TolA C-terminal CH57_3368 PF07676 WD40-like Beta Propeller Repeat CH57_3368 PF04052 TolB amino-terminal domain CH57_3369 PF00691 OmpA family CH57_3370 PF13174 Tetratricopeptide repeat CH57_3370 PF16331 TolA binding protein trimerisation CH57_3374 PF02445 Quinolinate synthetase A protein CH57_3375 PF04973 Nicotinamide mononucleotide transporter CH57_3376 PF01545 Cation efflux family CH57_3378 PF00793 DAHP synthetase I family CH57_3379 PF01695 IstB-like ATP binding protein CH57_338 PF00356 Bacterial regulatory proteins, lacI family CH57_3380 PF02796 Helix-turn-helix domain of resolvase CH57_3380 PF00665 Integrase core domain CH57_3381 PF00300 Histidine phosphatase superfamily (branch 1) CH57_3383 PF01263 Aldose 1-epimerase CH57_3385 PF00288 GHMP kinases N terminal domain CH57_3385 PF08544 GHMP kinases C terminal CH57_3385 PF10509 Galactokinase galactose-binding signature CH57_3386 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain CH57_3386 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain CH57_3387 PF16363 GDP-mannose 4,6 dehydratase CH57_3390 PF00005 ABC transporter CH57_3391 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH57_3391 PF03459 TOBE domain CH57_3392 PF10766 Multidrug efflux pump-associated protein AcrZ CH57_3394 PF00528 Binding-protein-dependent transport system inner membrane component CH57_3395 PF00005 ABC transporter CH57_3395 PF03459 TOBE domain CH57_3397 PF10282 Lactonase, 7-bladed beta-propeller CH57_3398 PF00202 Aminotransferase class-III CH57_3399 PF04055 Radical SAM superfamily CH57_3399 PF06968 Biotin and Thiamin Synthesis associated domain CH57_340 PF13407 Periplasmic binding protein domain CH57_3400 PF00155 Aminotransferase class I and II CH57_3401 PF08241 Methyltransferase domain CH57_3404 PF00271 Helicase conserved C-terminal domain CH57_3404 PF17757 UvrB interaction domain CH57_3404 PF04851 Type III restriction enzyme, res subunit CH57_3404 PF12344 Ultra-violet resistance protein B CH57_3404 PF02151 UvrB/uvrC motif CH57_3405 PF09905 DNA-binding protein VF530 CH57_3406 PF01933 Uncharacterised protein family UPF0052 CH57_3408 PF06463 Molybdenum Cofactor Synthesis C CH57_3408 PF04055 Radical SAM superfamily CH57_3409 PF01967 MoaC family CH57_341 PF09084 NMT1/THI5 like CH57_3410 PF02597 ThiS family CH57_3411 PF02391 MoaE protein CH57_3412 PF01027 Inhibitor of apoptosis-promoting Bax1 CH57_3413 PF01797 Transposase IS200 like CH57_3414 PF00732 GMC oxidoreductase CH57_3414 PF05199 GMC oxidoreductase CH57_3415 PF00171 Aldehyde dehydrogenase family CH57_3416 PF00440 Bacterial regulatory proteins, tetR family CH57_3416 PF13977 BetI-type transcriptional repressor, C-terminal CH57_3417 PF02028 BCCT, betaine/carnitine/choline family transporter CH57_3418 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH57_3418 PF03466 LysR substrate binding domain CH57_342 PF00528 Binding-protein-dependent transport system inner membrane component CH57_3420 PF01048 Phosphorylase superfamily CH57_3421 PF03825 Nucleoside H+ symporter CH57_3422 PF01797 Transposase IS200 like CH57_3424 PF01207 Dihydrouridine synthase (Dus) CH57_3426 PF00768 D-alanyl-D-alanine carboxypeptidase CH57_3427 PF01565 FAD binding domain CH57_3427 PF09330 D-lactate dehydrogenase, membrane binding CH57_3428 PF01928 CYTH domain CH57_3429 PF01844 HNH endonuclease CH57_343 PF01048 Phosphorylase superfamily CH57_343 PF10423 Bacterial AMP nucleoside phosphorylase N-terminus CH57_3431 PF04226 Transglycosylase associated protein CH57_3432 PF00005 ABC transporter CH57_3434 PF00528 Binding-protein-dependent transport system inner membrane component CH57_3435 PF00528 Binding-protein-dependent transport system inner membrane component CH57_3436 PF07308 Protein of unknown function (DUF1456) CH57_3437 PF00158 Sigma-54 interaction domain CH57_3437 PF13188 PAS domain CH57_3437 PF02954 Bacterial regulatory protein, Fis family CH57_3438 PF02653 Branched-chain amino acid transport system / permease component CH57_3439 PF02653 Branched-chain amino acid transport system / permease component CH57_3440 PF00005 ABC transporter CH57_3441 PF00005 ABC transporter CH57_3444 PF00581 Rhodanese-like domain CH57_3447 PF00528 Binding-protein-dependent transport system inner membrane component CH57_3448 PF00005 ABC transporter CH57_3449 PF00528 Binding-protein-dependent transport system inner membrane component CH57_3450 PF13520 Amino acid permease CH57_3451 PF01276 Orn/Lys/Arg decarboxylase, major domain CH57_3451 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain CH57_3451 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain CH57_3453 PF00892 EamA-like transporter family CH57_3454 PF00267 Gram-negative porin CH57_3455 PF06733 DEAD_2 CH57_3455 PF13307 Helicase C-terminal domain CH57_3456 PF06628 Catalase-related immune-responsive CH57_3456 PF00199 Catalase CH57_3457 PF07437 YfaZ precursor CH57_3458 PF03222 Tryptophan/tyrosine permease family CH57_3459 PF00994 Probable molybdopterin binding domain CH57_3460 PF03974 Ecotin CH57_3461 PF00111 2Fe-2S iron-sulfur cluster binding domain CH57_3462 PF00268 Ribonucleotide reductase, small chain CH57_3463 PF00317 Ribonucleotide reductase, all-alpha domain CH57_3463 PF03477 ATP cone domain CH57_3463 PF02867 Ribonucleotide reductase, barrel domain CH57_3465 PF00521 DNA gyrase/topoisomerase IV, subunit A CH57_3465 PF03989 DNA gyrase C-terminal domain, beta-propeller CH57_3466 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH57_3466 PF00512 His Kinase A (phospho-acceptor) domain CH57_3466 PF09456 RcsC Alpha-Beta-Loop (ABL) CH57_3466 PF00072 Response regulator receiver domain CH57_3467 PF00072 Response regulator receiver domain CH57_3467 PF00196 Bacterial regulatory proteins, luxR family CH57_3468 PF01627 Hpt domain CH57_3468 PF16359 RcsD-ABL domain CH57_3468 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH57_3469 PF16359 RcsD-ABL domain CH57_3469 PF01627 Hpt domain CH57_3469 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH57_3470 PF07690 Major Facilitator Superfamily CH57_3472 PF00267 Gram-negative porin CH57_3473 PF01797 Transposase IS200 like CH57_3474 PF01797 Transposase IS200 like CH57_3477 PF00144 Beta-lactamase CH57_3479 PF12706 Beta-lactamase superfamily domain CH57_348 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CH57_348 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CH57_348 PF00205 Thiamine pyrophosphate enzyme, central domain CH57_3480 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CH57_3480 PF00672 HAMP domain CH57_3480 PF02743 Cache domain CH57_3481 PF01278 Omptin family CH57_3482 PF06183 DinI-like family CH57_3483 PF01381 Helix-turn-helix CH57_3483 PF00717 Peptidase S24-like CH57_3484 PF06530 Phage antitermination protein Q CH57_3485 PF17042 Nucleotide-binding C-terminal domain CH57_3485 PF07005 Sugar-binding N-terminal domain CH57_3486 PF00596 Class II Aldolase and Adducin N-terminal domain CH57_3487 PF08220 DeoR-like helix-turn-helix domain CH57_3487 PF00455 DeoR C terminal sensor domain CH57_3488 PF01261 Xylose isomerase-like TIM barrel CH57_349 PF01842 ACT domain CH57_3492 PF17482 Phage tail sheath C-terminal domain CH57_3492 PF04984 Phage tail sheath protein subtilisin-like domain CH57_350 PF13419 Haloacid dehalogenase-like hydrolase CH57_3500 PF04865 Baseplate J-like protein CH57_3503 PF07484 Phage Tail Collar Domain CH57_3504 PF01380 SIS domain CH57_3504 PF01418 Helix-turn-helix domain, rpiR family CH57_3506 PF00232 Glycosyl hydrolase family 1 CH57_3510 PF05638 Type VI secretion system effector, Hcp CH57_3513 PF11893 Domain of unknown function (DUF3413) CH57_3513 PF00884 Sulfatase CH57_3514 PF07208 Protein of unknown function (DUF1414) CH57_3515 PF04245 37-kD nucleoid-associated bacterial protein CH57_3516 PF01797 Transposase IS200 like CH57_3517 PF01386 Ribosomal L25p family CH57_3518 PF04851 Type III restriction enzyme, res subunit CH57_3518 PF00271 Helicase conserved C-terminal domain CH57_3519 PF01479 S4 domain CH57_3519 PF00849 RNA pseudouridylate synthase CH57_3520 PF07690 Major Facilitator Superfamily CH57_3521 PF13989 YejG-like protein CH57_3522 PF00005 ABC transporter CH57_3522 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CH57_3523 PF12911 N-terminal TM domain of oligopeptide transport permease C CH57_3523 PF00528 Binding-protein-dependent transport system inner membrane component CH57_3524 PF00528 Binding-protein-dependent transport system inner membrane component CH57_3525 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CH57_3526 PF00563 EAL domain CH57_3526 PF12792 CSS motif domain associated with EAL CH57_3528 PF00877 NlpC/P60 family CH57_3529 PF01569 PAP2 superfamily CH57_353 PF00245 Alkaline phosphatase CH57_3530 PF02492 CobW/HypB/UreG, nucleotide-binding domain CH57_3530 PF07683 Cobalamin synthesis protein cobW C-terminal domain CH57_3532 PF07729 FCD domain CH57_3532 PF00392 Bacterial regulatory proteins, gntR family CH57_3533 PF08125 Mannitol dehydrogenase C-terminal domain CH57_3533 PF01232 Mannitol dehydrogenase Rossmann domain CH57_3534 PF03786 D-mannonate dehydratase (UxuA) CH57_3535 PF01132 Elongation factor P (EF-P) OB domain CH57_3535 PF08207 Elongation factor P (EF-P) KOW-like domain CH57_3535 PF09285 Elongation factor P, C-terminal CH57_3536 PF03222 Tryptophan/tyrosine permease family CH57_3537 PF03692 Putative zinc- or iron-chelating domain CH57_3539 PF01842 ACT domain CH57_3539 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CH57_3539 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CH57_354 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain CH57_354 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain CH57_3541 PF00171 Aldehyde dehydrogenase family CH57_3542 PF02782 FGGY family of carbohydrate kinases, C-terminal domain CH57_3542 PF00370 FGGY family of carbohydrate kinases, N-terminal domain CH57_3543 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) CH57_3545 PF00005 ABC transporter CH57_3546 PF02653 Branched-chain amino acid transport system / permease component CH57_3547 PF00293 NUDIX domain CH57_3548 PF00381 PTS HPr component phosphorylation site CH57_3548 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 CH57_3549 PF00294 pfkB family carbohydrate kinase CH57_355 PF13545 Crp-like helix-turn-helix domain CH57_355 PF00027 Cyclic nucleotide-binding domain CH57_3550 PF02378 Phosphotransferase system, EIIC CH57_3550 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit CH57_3551 PF00486 Transcriptional regulatory protein, C terminal CH57_3552 PF17550 Family of unknown function CH57_3554 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain CH57_3554 PF02753 Pili assembly chaperone PapD, C-terminal domain CH57_3555 PF13953 PapC C-terminal domain CH57_3555 PF13954 PapC N-terminal domain CH57_3555 PF00577 Outer membrane usher protein CH57_3556 PF01261 Xylose isomerase-like TIM barrel CH57_3557 PF03601 Conserved hypothetical protein 698 CH57_3558 PF03466 LysR substrate binding domain CH57_3558 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH57_356 PF00582 Universal stress protein family CH57_3560 PF00324 Amino acid permease CH57_3562 PF01032 FecCD transport family CH57_3563 PF00005 ABC transporter CH57_3564 PF00593 TonB dependent receptor CH57_3564 PF07715 TonB-dependent Receptor Plug Domain CH57_3565 PF13417 Glutathione S-transferase, N-terminal domain CH57_3565 PF00043 Glutathione S-transferase, C-terminal domain CH57_3569 PF03180 NLPA lipoprotein CH57_357 PF01695 IstB-like ATP binding protein CH57_3570 PF00005 ABC transporter CH57_3570 PF09383 NIL domain CH57_3571 PF00528 Binding-protein-dependent transport system inner membrane component CH57_3572 PF07943 Penicillin-binding protein 5, C-terminal domain CH57_3572 PF00768 D-alanyl-D-alanine carboxypeptidase CH57_3575 PF08220 DeoR-like helix-turn-helix domain CH57_3575 PF00455 DeoR C terminal sensor domain CH57_3576 PF01791 DeoC/LacD family aldolase CH57_3577 PF01569 PAP2 superfamily CH57_3579 PF02080 TrkA-C domain CH57_3579 PF06826 Predicted Permease Membrane Region CH57_358 PF01695 IstB-like ATP binding protein CH57_3580 PF00462 Glutaredoxin CH57_3581 PF07214 Protein of unknown function (DUF1418) CH57_3582 PF10722 Putative bacterial sensory transduction regulator CH57_3583 PF13416 Bacterial extracellular solute-binding protein CH57_3584 PF08402 TOBE domain CH57_3584 PF00005 ABC transporter CH57_3585 PF00528 Binding-protein-dependent transport system inner membrane component CH57_3586 PF00528 Binding-protein-dependent transport system inner membrane component CH57_3587 PF10767 Protein of unknown function (DUF2593) CH57_3588 PF05958 tRNA (Uracil-5-)-methyltransferase CH57_3589 PF00497 Bacterial extracellular solute-binding proteins, family 3 CH57_359 PF02796 Helix-turn-helix domain of resolvase CH57_359 PF00665 Integrase core domain CH57_3590 PF02796 Helix-turn-helix domain of resolvase CH57_3590 PF00665 Integrase core domain CH57_3591 PF01695 IstB-like ATP binding protein CH57_3592 PF02801 Beta-ketoacyl synthase, C-terminal domain CH57_3592 PF00109 Beta-ketoacyl synthase, N-terminal domain CH57_3593 PF01797 Transposase IS200 like CH57_3594 PF03886 ABC-type transport auxiliary lipoprotein component CH57_3595 PF02470 MlaD protein CH57_3596 PF04403 Paraquat-inducible protein A CH57_3597 PF16326 ABC transporter C-terminal domain CH57_3597 PF00005 ABC transporter CH57_3597 PF12848 ABC transporter CH57_3598 PF10672 S-adenosylmethionine-dependent methyltransferase CH57_3598 PF02926 THUMP domain CH57_3598 PF01170 Putative RNA methylase family UPF0020 CH57_3599 PF03473 MOSC domain CH57_3599 PF03476 MOSC N-terminal beta barrel domain CH57_3599 PF00111 2Fe-2S iron-sulfur cluster binding domain CH57_360 PF02233 NAD(P) transhydrogenase beta subunit CH57_3600 PF07126 Cell-division protein ZapC CH57_3601 PF01180 Dihydroorotate dehydrogenase CH57_3602 PF01433 Peptidase family M1 domain CH57_3602 PF17432 Domain of unknown function (DUF3458_C) ARM repeats CH57_3602 PF11940 Domain of unknown function (DUF3458) Ig-like fold CH57_3603 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family CH57_3603 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain CH57_3604 PF00152 tRNA synthetases class II (D, K and N) CH57_3604 PF01336 OB-fold nucleic acid binding domain CH57_3605 PF00267 Gram-negative porin CH57_3606 PF00155 Aminotransferase class I and II CH57_3607 PF00753 Metallo-beta-lactamase superfamily CH57_3608 PF05951 Bacterial protein of unknown function (DUF882) CH57_3609 PF03734 L,D-transpeptidase catalytic domain CH57_3609 PF01471 Putative peptidoglycan binding domain CH57_361 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch CH57_361 PF01262 Alanine dehydrogenase/PNT, C-terminal domain CH57_361 PF05222 Alanine dehydrogenase/PNT, N-terminal domain CH57_3610 PF01797 Transposase IS200 like CH57_3611 PF04310 MukB N-terminal CH57_3611 PF16330 MukB hinge domain CH57_3612 PF04288 MukE-like family CH57_3613 PF17192 MukF middle domain CH57_3613 PF17193 MukF C-terminal domain CH57_3613 PF03882 MukF winged-helix domain CH57_3615 PF01636 Phosphotransferase enzyme family CH57_3616 PF02348 Cytidylyltransferase CH57_3617 PF03966 Trm112p-like protein CH57_3618 PF00313 'Cold-shock' DNA-binding domain CH57_3619 PF07063 Domain of unknown function (DUF1338) CH57_362 PF07338 Protein of unknown function (DUF1471) CH57_3620 PF02606 Tetraacyldisaccharide-1-P 4'-kinase CH57_3621 PF00005 ABC transporter CH57_3621 PF00664 ABC transporter transmembrane region CH57_3622 PF00753 Metallo-beta-lactamase superfamily CH57_3622 PF03772 Competence protein CH57_3623 PF00216 Bacterial DNA-binding protein CH57_3625 PF00575 S1 RNA binding domain CH57_3626 PF02224 Cytidylate kinase CH57_3627 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) CH57_3628 PF00266 Aminotransferase class-V CH57_363 PF13520 Amino acid permease CH57_3630 PF05658 Head domain of trimeric autotransporter adhesin CH57_3630 PF03895 YadA-like membrane anchor domain CH57_3630 PF05662 Coiled stalk of trimeric autotransporter adhesin CH57_3630 PF05662 Coiled stalk of trimeric autotransporter adhesin CH57_3630 PF13018 Extended Signal Peptide of Type V secretion system CH57_3630 PF05658 Head domain of trimeric autotransporter adhesin CH57_3630 PF13018 Extended Signal Peptide of Type V secretion system CH57_3630 PF03895 YadA-like membrane anchor domain CH57_3631 PF00710 Asparaginase, N-terminal CH57_3631 PF17763 Glutaminase/Asparaginase C-terminal domain CH57_3632 PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding CH57_3632 PF18381 YcaO cyclodehydratase C-terminal domain CH57_3633 PF01226 Formate/nitrite transporter CH57_3634 PF02901 Pyruvate formate lyase-like CH57_3634 PF01228 Glycine radical CH57_3636 PF04055 Radical SAM superfamily CH57_3637 PF07690 Major Facilitator Superfamily CH57_3638 PF02403 Seryl-tRNA synthetase N-terminal domain CH57_3638 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CH57_3639 PF12002 MgsA AAA+ ATPase C terminal CH57_3639 PF16193 AAA C-terminal domain CH57_3639 PF00004 ATPase family associated with various cellular activities (AAA) CH57_3641 PF03548 Outer membrane lipoprotein carrier protein LolA CH57_3642 PF17854 FtsK alpha domain CH57_3642 PF13491 4TM region of DNA translocase FtsK/SpoIIIE CH57_3642 PF09397 Ftsk gamma domain CH57_3642 PF01580 FtsK/SpoIIIE family CH57_3643 PF01037 Lrp/AsnC ligand binding domain CH57_3644 PF07992 Pyridine nucleotide-disulphide oxidoreductase CH57_3645 PF00664 ABC transporter transmembrane region CH57_3645 PF00005 ABC transporter CH57_3646 PF00005 ABC transporter CH57_3646 PF00664 ABC transporter transmembrane region CH57_3647 PF03588 Leucyl/phenylalanyl-tRNA protein transferase CH57_3648 PF01176 Translation initiation factor 1A / IF-1 CH57_3649 PF01797 Transposase IS200 like CH57_365 PF00486 Transcriptional regulatory protein, C terminal CH57_365 PF00072 Response regulator receiver domain CH57_3650 PF00004 ATPase family associated with various cellular activities (AAA) CH57_3650 PF07724 AAA domain (Cdc48 subfamily) CH57_3650 PF17871 AAA lid domain CH57_3650 PF02861 Clp amino terminal domain, pathogenicity island component CH57_3650 PF10431 C-terminal, D2-small domain, of ClpB protein CH57_3651 PF02617 ATP-dependent Clp protease adaptor protein ClpS CH57_3652 PF00313 'Cold-shock' DNA-binding domain CH57_3653 PF02687 FtsX-like permease family CH57_3653 PF00005 ABC transporter CH57_3653 PF12704 MacB-like periplasmic core domain CH57_3654 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CH57_3655 PF04393 Protein of unknown function (DUF535) CH57_3656 PF11398 Protein of unknown function (DUF2813) CH57_3657 PF03956 Lysine exporter LysO CH57_3658 PF03063 Prismane/CO dehydrogenase family CH57_3659 PF00970 Oxidoreductase FAD-binding domain CH57_3659 PF00111 2Fe-2S iron-sulfur cluster binding domain CH57_3659 PF00175 Oxidoreductase NAD-binding domain CH57_366 PF00672 HAMP domain CH57_366 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH57_366 PF00512 His Kinase A (phospho-acceptor) domain CH57_3660 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CH57_3660 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CH57_3660 PF00205 Thiamine pyrophosphate enzyme, central domain CH57_3661 PF01212 Beta-eliminating lyase CH57_3662 PF13460 NAD(P)H-binding CH57_3662 PF11066 Protein of unknown function (DUF2867) CH57_3663 PF01370 NAD dependent epimerase/dehydratase family CH57_3664 PF12883 Protein of unknown function (DUF3828) CH57_3665 PF01817 Chorismate mutase type II CH57_3666 PF00005 ABC transporter CH57_3667 PF00497 Bacterial extracellular solute-binding proteins, family 3 CH57_3668 PF00528 Binding-protein-dependent transport system inner membrane component CH57_3669 PF00528 Binding-protein-dependent transport system inner membrane component CH57_367 PF02074 Carboxypeptidase Taq (M32) metallopeptidase CH57_3670 PF00892 EamA-like transporter family CH57_3671 PF10100 Staphylopine dehydrogenase CH57_3672 PF03059 Nicotianamine synthase protein CH57_3673 PF00005 ABC transporter CH57_3674 PF01032 FecCD transport family CH57_3679 PF00497 Bacterial extracellular solute-binding proteins, family 3 CH57_368 PF01797 Transposase IS200 like CH57_3680 PF01695 IstB-like ATP binding protein CH57_3681 PF02796 Helix-turn-helix domain of resolvase CH57_3681 PF00665 Integrase core domain CH57_3682 PF00109 Beta-ketoacyl synthase, N-terminal domain CH57_3682 PF02801 Beta-ketoacyl synthase, C-terminal domain CH57_3684 PF07977 FabA-like domain CH57_3685 PF13654 AAA domain CH57_3685 PF05362 Lon protease (S16) C-terminal proteolytic domain CH57_3686 PF06303 MatP N-terminal domain CH57_3686 PF17414 MatP C-terminal ribbon-helix-helix domain CH57_3687 PF01797 Transposase IS200 like CH57_3688 PF00691 OmpA family CH57_3688 PF01389 OmpA-like transmembrane domain CH57_3689 PF03846 Cell division inhibitor SulA CH57_369 PF18807 Tripartite Tc toxins repeat CH57_369 PF14431 YwqJ-like deaminase CH57_3690 PF04993 TfoX N-terminal domain CH57_3690 PF04994 TfoX C-terminal domain CH57_3691 PF12805 FUSC-like inner membrane protein yccS CH57_3692 PF03733 Inner membrane component domain CH57_3693 PF12462 DNA helicase IV / RNA helicase N terminal CH57_3693 PF13361 UvrD-like helicase C-terminal domain CH57_3693 PF00580 UvrD/REP helicase N-terminal domain CH57_3694 PF02142 MGS-like domain CH57_3695 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) CH57_3696 PF13380 CoA binding domain CH57_3697 PF08755 Hemimethylated DNA-binding protein YccV like CH57_3698 PF10672 S-adenosylmethionine-dependent methyltransferase CH57_3698 PF17785 PUA-like domain CH57_3699 PF00708 Acylphosphatase CH57_3700 PF04358 DsrC like protein CH57_3702 PF13610 DDE domain CH57_3706 PF01565 FAD binding domain CH57_3706 PF08031 Berberine and berberine like CH57_3709 PF07977 FabA-like domain CH57_371 PF04264 YceI-like domain CH57_3710 PF00109 Beta-ketoacyl synthase, N-terminal domain CH57_3710 PF02801 Beta-ketoacyl synthase, C-terminal domain CH57_3712 PF08540 Hydroxymethylglutaryl-coenzyme A synthase C terminal CH57_3712 PF01154 Hydroxymethylglutaryl-coenzyme A synthase N terminal CH57_3714 PF00378 Enoyl-CoA hydratase/isomerase CH57_3717 PF00550 Phosphopantetheine attachment site CH57_3718 PF00698 Acyl transferase domain CH57_372 PF01292 Prokaryotic cytochrome b561 CH57_3724 PF00691 OmpA family CH57_3724 PF05736 OprF membrane domain CH57_3726 PF10431 C-terminal, D2-small domain, of ClpB protein CH57_3726 PF07724 AAA domain (Cdc48 subfamily) CH57_3726 PF17871 AAA lid domain CH57_3726 PF00004 ATPase family associated with various cellular activities (AAA) CH57_374 PF00089 Trypsin CH57_3745 PF12848 ABC transporter CH57_3745 PF00005 ABC transporter CH57_3747 PF00872 Transposase, Mutator family CH57_3748 PF00899 ThiF family CH57_3749 PF00994 Probable molybdopterin binding domain CH57_3749 PF03454 MoeA C-terminal region (domain IV) CH57_3749 PF03453 MoeA N-terminal region (domain I and II) CH57_3751 PF00005 ABC transporter CH57_3752 PF13533 Biotin-lipoyl like CH57_3755 PF00756 Putative esterase CH57_3756 PF00107 Zinc-binding dehydrogenase CH57_3756 PF08240 Alcohol dehydrogenase GroES-like domain CH57_3757 PF03466 LysR substrate binding domain CH57_3757 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH57_3758 PF06779 Uncharacterised MFS-type transporter YbfB CH57_3759 PF01227 GTP cyclohydrolase I CH57_3760 PF04235 Protein of unknown function (DUF418) CH57_3761 PF13407 Periplasmic binding protein domain CH57_3762 PF00005 ABC transporter CH57_3763 PF02653 Branched-chain amino acid transport system / permease component CH57_3764 PF02698 DUF218 domain CH57_3765 PF03949 Malic enzyme, NAD binding domain CH57_3765 PF00390 Malic enzyme, N-terminal domain CH57_3766 PF08211 Cytidine and deoxycytidylate deaminase zinc-binding region CH57_3766 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region CH57_3767 PF04172 LrgB-like family CH57_3768 PF03788 LrgA family CH57_3769 PF07690 Major Facilitator Superfamily CH57_377 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold CH57_377 PF00271 Helicase conserved C-terminal domain CH57_377 PF11898 Domain of unknown function (DUF3418) CH57_377 PF04408 Helicase associated domain (HA2) CH57_377 PF00270 DEAD/DEAH box helicase CH57_3773 PF01695 IstB-like ATP binding protein CH57_3774 PF00665 Integrase core domain CH57_3774 PF02796 Helix-turn-helix domain of resolvase CH57_3775 PF01797 Transposase IS200 like CH57_3776 PF01588 Putative tRNA binding domain CH57_3776 PF09334 tRNA synthetases class I (M) CH57_3777 PF10609 NUBPL iron-transfer P-loop NTPase CH57_3778 PF00485 Phosphoribulokinase / Uridine kinase family CH57_3779 PF00692 dUTPase CH57_378 PF02525 Flavodoxin-like fold CH57_3780 PF05170 AsmA family CH57_3781 PF03741 Integral membrane protein TerC family CH57_3781 PF03471 Transporter associated domain CH57_3781 PF00571 CBS domain CH57_3782 PF11575 FhuF 2Fe-2S C-terminal domain CH57_3782 PF06276 Ferric iron reductase FhuF-like transporter CH57_3783 PF00282 Pyridoxal-dependent decarboxylase conserved domain CH57_3784 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) CH57_3786 PF06276 Ferric iron reductase FhuF-like transporter CH57_3786 PF04183 IucA / IucC family CH57_3787 PF00005 ABC transporter CH57_3788 PF01032 FecCD transport family CH57_3789 PF01032 FecCD transport family CH57_379 PF04198 Putative sugar-binding domain CH57_379 PF00325 Bacterial regulatory proteins, crp family CH57_3790 PF01497 Periplasmic binding protein CH57_3791 PF07660 Secretin and TonB N terminus short domain CH57_3791 PF00593 TonB dependent receptor CH57_3791 PF07715 TonB-dependent Receptor Plug Domain CH57_3792 PF04183 IucA / IucC family CH57_3792 PF06276 Ferric iron reductase FhuF-like transporter CH57_3793 PF00483 Nucleotidyl transferase CH57_3794 PF00483 Nucleotidyl transferase CH57_3795 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase CH57_3795 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain CH57_3796 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase CH57_3796 PF01502 Phosphoribosyl-AMP cyclohydrolase CH57_3797 PF00977 Histidine biosynthesis protein CH57_3798 PF00977 Histidine biosynthesis protein CH57_3799 PF00117 Glutamine amidotransferase class-I CH57_38 PF00512 His Kinase A (phospho-acceptor) domain CH57_38 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH57_38 PF00672 HAMP domain CH57_380 PF08125 Mannitol dehydrogenase C-terminal domain CH57_380 PF01232 Mannitol dehydrogenase Rossmann domain CH57_3800 PF00475 Imidazoleglycerol-phosphate dehydratase CH57_3801 PF00155 Aminotransferase class I and II CH57_3802 PF00815 Histidinol dehydrogenase CH57_3803 PF01634 ATP phosphoribosyltransferase CH57_3803 PF08029 HisG, C-terminal domain CH57_3804 PF01370 NAD dependent epimerase/dehydratase family CH57_3806 PF02653 Branched-chain amino acid transport system / permease component CH57_3807 PF00005 ABC transporter CH57_3808 PF00005 ABC transporter CH57_3809 PF00465 Iron-containing alcohol dehydrogenase CH57_381 PF07027 Protein of unknown function (DUF1318) CH57_3811 PF13520 Amino acid permease CH57_3812 PF00929 Exonuclease CH57_3812 PF08411 Exonuclease C-terminal CH57_3814 PF04363 Protein of unknown function (DUF496) CH57_3815 PF00872 Transposase, Mutator family CH57_3816 PF02369 Bacterial Ig-like domain (group 1) CH57_3816 PF11924 Inverse autotransporter, beta-domain CH57_3816 PF09134 Invasin, domain 3 CH57_3817 PF00872 Transposase, Mutator family CH57_3818 PF07690 Major Facilitator Superfamily CH57_3819 PF04134 Protein of unknown function, DUF393 CH57_382 PF13617 YnbE-like lipoprotein CH57_3821 PF01557 Fumarylacetoacetate (FAA) hydrolase family CH57_3822 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain CH57_3822 PF13378 Enolase C-terminal domain-like CH57_3824 PF01070 FMN-dependent dehydrogenase CH57_3825 PF00764 Arginosuccinate synthase CH57_3826 PF01554 MatE CH57_3828 PF01522 Polysaccharide deacetylase CH57_383 PF11739 Dicarboxylate transport CH57_3830 PF09831 Uncharacterized protein conserved in bacteria (DUF2058) CH57_3832 PF00072 Response regulator receiver domain CH57_3832 PF00196 Bacterial regulatory proteins, luxR family CH57_3833 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component CH57_3835 PF03480 Bacterial extracellular solute-binding protein, family 7 CH57_3836 PF17837 4'-phosphopantetheinyl transferase N-terminal domain CH57_3836 PF01648 4'-phosphopantetheinyl transferase superfamily CH57_3839 PF16874 Glycosyl hydrolase family 36 C-terminal domain CH57_3839 PF16875 Glycosyl hydrolase family 36 N-terminal domain CH57_384 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CH57_384 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CH57_3840 PF01306 LacY proton/sugar symporter CH57_3841 PF13991 BssS protein family CH57_3842 PF00872 Transposase, Mutator family CH57_3843 PF06183 DinI-like family CH57_3844 PF01979 Amidohydrolase family CH57_3845 PF03992 Antibiotic biosynthesis monooxygenase CH57_3846 PF00872 Transposase, Mutator family CH57_3847 PF10150 Ribonuclease E/G family CH57_3847 PF00575 S1 RNA binding domain CH57_3847 PF12111 Polyribonucleotide phosphorylase C terminal CH57_3848 PF01479 S4 domain CH57_3848 PF00849 RNA pseudouridylate synthase CH57_3849 PF01797 Transposase IS200 like CH57_385 PF03724 META domain CH57_3850 PF02545 Maf-like protein CH57_3851 PF02620 Large ribosomal RNA subunit accumulation protein YceD CH57_3852 PF01783 Ribosomal L32p protein family CH57_3853 PF02504 Fatty acid synthesis protein CH57_3854 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III CH57_3854 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal CH57_3855 PF00698 Acyl transferase domain CH57_3857 PF00550 Phosphopantetheine attachment site CH57_3858 PF02801 Beta-ketoacyl synthase, C-terminal domain CH57_3858 PF00109 Beta-ketoacyl synthase, N-terminal domain CH57_3859 PF01797 Transposase IS200 like CH57_386 PF03891 Domain of unknown function (DUF333) CH57_3860 PF01063 Amino-transferase class IV CH57_3861 PF02618 YceG-like family CH57_3862 PF02223 Thymidylate kinase CH57_3863 PF09115 DNA polymerase III, delta subunit, C terminal CH57_3864 PF01026 TatD related DNase CH57_3865 PF02378 Phosphotransferase system, EIIC CH57_3865 PF00367 phosphotransferase system, EIIB CH57_3866 PF01797 Transposase IS200 like CH57_3867 PF08501 Shikimate dehydrogenase substrate binding domain CH57_3868 PF01230 HIT domain CH57_3869 PF07233 Protein of unknown function (DUF1425) CH57_387 PF02308 MgtC family CH57_3870 PF08139 Prokaryotic membrane lipoprotein lipid attachment site CH57_3870 PF13036 Peptidoglycan-synthase activator LpoB CH57_3871 PF01636 Phosphotransferase enzyme family CH57_3872 PF00933 Glycosyl hydrolase family 3 N terminal domain CH57_3873 PF05728 Uncharacterised protein family (UPF0227) CH57_3874 PF07992 Pyridine nucleotide-disulphide oxidoreductase CH57_3877 PF00872 Transposase, Mutator family CH57_388 PF00893 Small Multidrug Resistance protein CH57_3881 PF02796 Helix-turn-helix domain of resolvase CH57_3881 PF00665 Integrase core domain CH57_3882 PF05433 Glycine zipper 2TM domain CH57_3883 PF17757 UvrB interaction domain CH57_3883 PF03461 TRCF domain CH57_3883 PF00271 Helicase conserved C-terminal domain CH57_3883 PF00270 DEAD/DEAH box helicase CH57_3883 PF02559 CarD-like/TRCF domain CH57_3884 PF02687 FtsX-like permease family CH57_3884 PF12704 MacB-like periplasmic core domain CH57_3885 PF00005 ABC transporter CH57_3886 PF12704 MacB-like periplasmic core domain CH57_3886 PF02687 FtsX-like permease family CH57_3887 PF00480 ROK family CH57_3888 PF02146 Sir2 family CH57_3889 PF01546 Peptidase family M20/M25/M40 CH57_3889 PF07687 Peptidase dimerisation domain CH57_389 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II CH57_389 PF10371 Domain of unknown function CH57_389 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase CH57_389 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CH57_389 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg CH57_3890 PF08007 Cupin superfamily protein CH57_3891 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH57_3891 PF08918 PhoQ Sensor CH57_3892 PF00486 Transcriptional regulatory protein, C terminal CH57_3892 PF00072 Response regulator receiver domain CH57_3894 PF08328 Adenylosuccinate lyase C-terminal CH57_3894 PF00206 Lyase CH57_3895 PF04356 Protein of unknown function (DUF489) CH57_3897 PF00293 NUDIX domain CH57_3898 PF00849 RNA pseudouridylate synthase CH57_3899 PF00180 Isocitrate/isopropylmalate dehydrogenase CH57_39 PF00072 Response regulator receiver domain CH57_39 PF00486 Transcriptional regulatory protein, C terminal CH57_390 PF01171 PP-loop family CH57_3900 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family CH57_3900 PF00356 Bacterial regulatory proteins, lacI family CH57_3902 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CH57_3902 PF08447 PAS fold CH57_3903 PF05368 NmrA-like family CH57_3904 PF01638 HxlR-like helix-turn-helix CH57_3906 PF00328 Histidine phosphatase superfamily (branch 2) CH57_3907 PF14001 YdfZ protein CH57_3909 PF13404 AsnC-type helix-turn-helix domain CH57_3909 PF01037 Lrp/AsnC ligand binding domain CH57_3910 PF10777 Inner membrane protein YlaC CH57_3911 PF08659 KR domain CH57_3911 PF16197 Ketoacyl-synthetase C-terminal extension CH57_3911 PF02801 Beta-ketoacyl synthase, C-terminal domain CH57_3911 PF00550 Phosphopantetheine attachment site CH57_3911 PF00109 Beta-ketoacyl synthase, N-terminal domain CH57_3911 PF14765 Polyketide synthase dehydratase CH57_3911 PF00107 Zinc-binding dehydrogenase CH57_3911 PF00698 Acyl transferase domain CH57_3911 PF08240 Alcohol dehydrogenase GroES-like domain CH57_3912 PF16353 Domain of unknown function(DUF4981) CH57_3912 PF00703 Glycosyl hydrolases family 2 CH57_3912 PF02836 Glycosyl hydrolases family 2, TIM barrel domain CH57_3912 PF02837 Glycosyl hydrolases family 2, sugar binding domain CH57_3912 PF02929 Beta galactosidase small chain CH57_3913 PF00313 'Cold-shock' DNA-binding domain CH57_3914 PF10781 Dextransucrase DSRB CH57_3915 PF02203 Tar ligand binding domain homologue CH57_3915 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CH57_3915 PF00672 HAMP domain CH57_3916 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CH57_3916 PF00672 HAMP domain CH57_3916 PF02203 Tar ligand binding domain homologue CH57_3917 PF02308 MgtC family CH57_3918 PF00690 Cation transporter/ATPase, N-terminus CH57_3918 PF00689 Cation transporting ATPase, C-terminus CH57_3919 PF05247 Flagellar transcriptional activator (FlhD) CH57_392 PF13472 GDSL-like Lipase/Acylhydrolase family CH57_392 PF07859 alpha/beta hydrolase fold CH57_3920 PF05280 Flagellar transcriptional activator (FlhC) CH57_3921 PF01618 MotA/TolQ/ExbB proton channel family CH57_3922 PF00691 OmpA family CH57_3922 PF13677 Membrane MotB of proton-channel complex MotA/MotB CH57_3923 PF01584 CheW-like domain CH57_3923 PF01627 Hpt domain CH57_3923 PF09078 CheY binding CH57_3923 PF02895 Signal transducing histidine kinase, homodimeric domain CH57_3923 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH57_3924 PF01584 CheW-like domain CH57_3925 PF07690 Major Facilitator Superfamily CH57_3926 PF01042 Endoribonuclease L-PSP CH57_3928 PF08348 YheO-like PAS domain CH57_3928 PF13309 HTH domain CH57_3929 PF12951 Passenger-associated-transport-repeat CH57_3932 PF02203 Tar ligand binding domain homologue CH57_3932 PF00672 HAMP domain CH57_3932 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CH57_3935 PF01739 CheR methyltransferase, SAM binding domain CH57_3935 PF03705 CheR methyltransferase, all-alpha domain CH57_3936 PF01339 CheB methylesterase CH57_3936 PF00072 Response regulator receiver domain CH57_3937 PF00072 Response regulator receiver domain CH57_3938 PF04344 Chemotaxis phosphatase, CheZ CH57_3939 PF01510 N-acetylmuramoyl-L-alanine amidase CH57_394 PF01544 CorA-like Mg2+ transporter protein CH57_3940 PF05662 Coiled stalk of trimeric autotransporter adhesin CH57_3940 PF05658 Head domain of trimeric autotransporter adhesin CH57_3940 PF03895 YadA-like membrane anchor domain CH57_3940 PF13018 Extended Signal Peptide of Type V secretion system CH57_3941 PF05662 Coiled stalk of trimeric autotransporter adhesin CH57_3941 PF13018 Extended Signal Peptide of Type V secretion system CH57_3941 PF03895 YadA-like membrane anchor domain CH57_3941 PF05658 Head domain of trimeric autotransporter adhesin CH57_3944 PF01168 Alanine racemase, N-terminal domain CH57_3944 PF00842 Alanine racemase, C-terminal domain CH57_395 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CH57_3950 PF01695 IstB-like ATP binding protein CH57_3951 PF02796 Helix-turn-helix domain of resolvase CH57_3951 PF00665 Integrase core domain CH57_3953 PF07351 Protein of unknown function (DUF1480) CH57_3956 PF02753 Pili assembly chaperone PapD, C-terminal domain CH57_3956 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain CH57_396 PF00246 Zinc carboxypeptidase CH57_3960 PF02470 MlaD protein CH57_3961 PF04403 Paraquat-inducible protein A CH57_3962 PF13185 GAF domain CH57_3963 PF04352 ProQ/FINO family CH57_3963 PF17516 ProQ C-terminal domain CH57_3964 PF17804 Tail specific protease N-terminal domain CH57_3964 PF03572 Peptidase family S41 CH57_3964 PF11818 C-terminal domain of tail specific protease (DUF3340) CH57_3964 PF00595 PDZ domain CH57_3966 PF01435 Peptidase family M48 CH57_3967 PF00419 Fimbrial protein CH57_3968 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain CH57_3968 PF02753 Pili assembly chaperone PapD, C-terminal domain CH57_3969 PF00577 Outer membrane usher protein CH57_3969 PF13954 PapC N-terminal domain CH57_3969 PF13953 PapC C-terminal domain CH57_397 PF13378 Enolase C-terminal domain-like CH57_397 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain CH57_3971 PF02753 Pili assembly chaperone PapD, C-terminal domain CH57_3971 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain CH57_3972 PF07690 Major Facilitator Superfamily CH57_3973 PF14583 Oligogalacturonate lyase CH57_3974 PF09339 IclR helix-turn-helix domain CH57_3974 PF01614 Bacterial transcriptional regulator CH57_3975 PF01510 N-acetylmuramoyl-L-alanine amidase CH57_3977 PF04307 LexA-binding, inner membrane-associated putative hydrolase CH57_3978 PF06178 Oligogalacturonate-specific porin protein (KdgM) CH57_3979 PF01547 Bacterial extracellular solute-binding protein CH57_398 PF08534 Redoxin CH57_3980 PF03459 TOBE domain CH57_3980 PF17912 MalK OB fold domain CH57_3980 PF00005 ABC transporter CH57_3981 PF00528 Binding-protein-dependent transport system inner membrane component CH57_3982 PF00528 Binding-protein-dependent transport system inner membrane component CH57_3983 PF06917 Periplasmic pectate lyase CH57_3985 PF04962 KduI/IolB family CH57_3986 PF07883 Cupin domain CH57_3987 PF00872 Transposase, Mutator family CH57_3988 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family CH57_3988 PF00356 Bacterial regulatory proteins, lacI family CH57_3989 PF00665 Integrase core domain CH57_3989 PF02796 Helix-turn-helix domain of resolvase CH57_399 PF01797 Transposase IS200 like CH57_3990 PF01695 IstB-like ATP binding protein CH57_3991 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family CH57_3991 PF00356 Bacterial regulatory proteins, lacI family CH57_3993 PF06167 Glucose-regulated metallo-peptidase M90 CH57_3996 PF00005 ABC transporter CH57_3996 PF00664 ABC transporter transmembrane region CH57_3998 PF12833 Helix-turn-helix domain CH57_4 PF00665 Integrase core domain CH57_4 PF02796 Helix-turn-helix domain of resolvase CH57_40 PF02129 X-Pro dipeptidyl-peptidase (S15 family) CH57_400 PF18024 Helix-turn-helix domain CH57_400 PF00158 Sigma-54 interaction domain CH57_4000 PF10964 Protein of unknown function (DUF2766) CH57_4001 PF13996 YobH-like protein CH57_4002 PF13974 YebO-like protein CH57_4005 PF00324 Amino acid permease CH57_4006 PF07017 Antimicrobial peptide resistance and lipid A acylation protein PagP CH57_4008 PF00313 'Cold-shock' DNA-binding domain CH57_4010 PF13847 Methyltransferase domain CH57_4012 PF00990 Diguanylate cyclase, GGDEF domain CH57_4012 PF13426 PAS domain CH57_4012 PF08448 PAS fold CH57_4012 PF08447 PAS fold CH57_4012 PF05231 MASE1 CH57_4012 PF00563 EAL domain CH57_4013 PF00593 TonB dependent receptor CH57_4013 PF07715 TonB-dependent Receptor Plug Domain CH57_4014 PF02659 Putative manganese efflux pump CH57_4015 PF06173 Protein of unknown function (DUF986) CH57_4016 PF03613 PTS system mannose/fructose/sorbose family IID component CH57_4017 PF03609 PTS system sorbose-specific iic component CH57_4018 PF03610 PTS system fructose IIA component CH57_4018 PF03830 PTS system sorbose subfamily IIB component CH57_4019 PF03741 Integral membrane protein TerC family CH57_4019 PF03471 Transporter associated domain CH57_4020 PF01047 MarR family CH57_4021 PF01557 Fumarylacetoacetate (FAA) hydrolase family CH57_4022 PF01557 Fumarylacetoacetate (FAA) hydrolase family CH57_4023 PF00171 Aldehyde dehydrogenase family CH57_4024 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase CH57_4025 PF02962 5-carboxymethyl-2-hydroxymuconate isomerase CH57_4026 PF01557 Fumarylacetoacetate (FAA) hydrolase family CH57_4027 PF03328 HpcH/HpaI aldolase/citrate lyase family CH57_4028 PF07690 Major Facilitator Superfamily CH57_4029 PF11794 4-hydroxyphenylacetate 3-hydroxylase N terminal CH57_4029 PF03241 4-hydroxyphenylacetate 3-hydroxylase C terminal CH57_403 PF05128 Domain of unknown function (DUF697) CH57_4030 PF01613 Flavin reductase like domain CH57_4031 PF03313 Serine dehydratase alpha chain CH57_4031 PF03315 Serine dehydratase beta chain CH57_4032 PF00293 NUDIX domain CH57_4033 PF00425 chorismate binding enzyme CH57_4033 PF04715 Anthranilate synthase component I, N terminal region CH57_4034 PF03701 Uncharacterised protein family (UPF0181) CH57_4035 PF02222 ATP-grasp domain CH57_4036 PF00271 Helicase conserved C-terminal domain CH57_4036 PF00270 DEAD/DEAH box helicase CH57_4036 PF03880 DbpA RNA binding domain CH57_4037 PF07130 YebG protein CH57_4039 PF13995 YebF-like protein CH57_404 PF04317 YcjX-like family, DUF463 CH57_4040 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain CH57_4040 PF00326 Prolyl oligopeptidase family CH57_4041 PF00561 alpha/beta hydrolase fold CH57_4042 PF06440 DNA polymerase III, theta subunit CH57_4043 PF00210 Ferritin-like domain CH57_4044 PF04234 CopC domain CH57_4046 PF10709 Protein of unknown function (DUF2511) CH57_4049 PF01312 FlhB HrpN YscU SpaS Family CH57_4050 PF00771 FHIPEP family CH57_4051 PF06366 Flagellar protein FlhE CH57_4052 PF09134 Invasin, domain 3 CH57_4052 PF02369 Bacterial Ig-like domain (group 1) CH57_4052 PF07979 Intimin C-type lectin domain CH57_4052 PF11924 Inverse autotransporter, beta-domain CH57_4053 PF01797 Transposase IS200 like CH57_4054 PF11924 Inverse autotransporter, beta-domain CH57_4054 PF07979 Intimin C-type lectin domain CH57_4054 PF02369 Bacterial Ig-like domain (group 1) CH57_4054 PF09134 Invasin, domain 3 CH57_4055 PF05130 FlgN protein CH57_4056 PF04316 Anti-sigma-28 factor, FlgM CH57_4057 PF13144 Chaperone for flagella basal body P-ring formation CH57_4057 PF17656 FlgA N-terminal domain CH57_4058 PF00460 Flagella basal body rod protein CH57_4059 PF00460 Flagella basal body rod protein CH57_4059 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CH57_406 PF04024 PspC domain CH57_4060 PF13861 FlgD Tudor-like domain CH57_4060 PF03963 Flagellar hook capping protein - N-terminal region CH57_4060 PF13860 FlgD Ig-like domain CH57_4061 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CH57_4061 PF00460 Flagella basal body rod protein CH57_4061 PF07559 Flagellar basal body protein FlaE CH57_4062 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CH57_4062 PF00460 Flagella basal body rod protein CH57_4063 PF00460 Flagella basal body rod protein CH57_4063 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CH57_4064 PF02107 Flagellar L-ring protein CH57_4065 PF02119 Flagellar P-ring protein CH57_4066 PF10135 Rod binding protein CH57_4066 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase CH57_4067 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CH57_4067 PF00460 Flagella basal body rod protein CH57_4068 PF00669 Bacterial flagellin N-terminal helical region CH57_4069 PF04198 Putative sugar-binding domain CH57_407 PF06667 Phage shock protein B CH57_4070 PF00596 Class II Aldolase and Adducin N-terminal domain CH57_4072 PF02653 Branched-chain amino acid transport system / permease component CH57_4073 PF13407 Periplasmic binding protein domain CH57_4074 PF00005 ABC transporter CH57_4075 PF02653 Branched-chain amino acid transport system / permease component CH57_4076 PF00294 pfkB family carbohydrate kinase CH57_4079 PF01311 Bacterial export proteins, family 1 CH57_408 PF04012 PspA/IM30 family CH57_4080 PF01313 Bacterial export proteins, family 3 CH57_4081 PF00813 FliP family CH57_4082 PF04347 Flagellar biosynthesis protein, FliO CH57_4083 PF16973 Flagellar motor switch protein FliN N-terminal CH57_4083 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term CH57_4084 PF02154 Flagellar motor switch protein FliM CH57_4084 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term CH57_4085 PF03748 Flagellar basal body-associated protein FliL CH57_4086 PF02120 Flagellar hook-length control protein FliK CH57_4087 PF02050 Flagellar FliJ protein CH57_4088 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CH57_4088 PF18269 T3SS EscN ATPase C-terminal domain CH57_4089 PF02108 Flagellar assembly protein FliH CH57_409 PF02954 Bacterial regulatory protein, Fis family CH57_409 PF00158 Sigma-54 interaction domain CH57_4090 PF14842 FliG N-terminal domain CH57_4090 PF01706 FliG C-terminal domain CH57_4090 PF14841 FliG middle domain CH57_4091 PF08345 Flagellar M-ring protein C-terminal CH57_4091 PF01514 Secretory protein of YscJ/FliF family CH57_4092 PF02049 Flagellar hook-basal body complex protein FliE CH57_4095 PF00730 HhH-GPD superfamily base excision DNA repair protein CH57_4096 PF01966 HD domain CH57_4097 PF00672 HAMP domain CH57_4097 PF02743 Cache domain CH57_4097 PF00211 Adenylate and Guanylate cyclase catalytic domain CH57_4098 PF12833 Helix-turn-helix domain CH57_4099 PF05400 Flagellar protein FliT CH57_410 PF01797 Transposase IS200 like CH57_4100 PF02561 Flagellar protein FliS CH57_4101 PF07196 Flagellin hook IN motif CH57_4101 PF07195 Flagellar hook-associated protein 2 C-terminus CH57_4101 PF02465 Flagellar hook-associated protein 2 N-terminus CH57_4102 PF00700 Bacterial flagellin C-terminal helical region CH57_4102 PF00669 Bacterial flagellin N-terminal helical region CH57_4102 PF08884 Flagellin D3 domain CH57_4103 PF04542 Sigma-70 region 2 CH57_4103 PF04539 Sigma-70 region 3 CH57_4103 PF04545 Sigma-70, region 4 CH57_4104 PF02899 Phage integrase, N-terminal SAM-like domain CH57_4105 PF00291 Pyridoxal-phosphate dependent enzyme CH57_411 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CH57_4111 PF14850 DNA-binding domain of Proline dehydrogenase CH57_4111 PF01619 Proline dehydrogenase CH57_4111 PF00171 Aldehyde dehydrogenase family CH57_4111 PF18327 Proline utilization A proline dehydrogenase N-terminal domain CH57_4113 PF00474 Sodium:solute symporter family CH57_4114 PF03239 Iron permease FTR1 family CH57_4115 PF09375 Imelysin CH57_4115 PF13473 Cupredoxin-like domain CH57_4116 PF04261 Dyp-type peroxidase family CH57_4117 PF03358 NADPH-dependent FMN reductase CH57_4118 PF01344 Kelch motif CH57_4119 PF00324 Amino acid permease CH57_412 PF00528 Binding-protein-dependent transport system inner membrane component CH57_4121 PF13505 Outer membrane protein beta-barrel domain CH57_4123 PF06942 GlpM protein CH57_4124 PF10769 Protein of unknown function (DUF2594) CH57_4125 PF00196 Bacterial regulatory proteins, luxR family CH57_4125 PF00072 Response regulator receiver domain CH57_4126 PF01541 GIY-YIG catalytic domain CH57_4126 PF02151 UvrB/uvrC motif CH57_4126 PF08459 UvrC Helix-hairpin-helix N-terminal CH57_4127 PF01066 CDP-alcohol phosphatidyltransferase CH57_413 PF00528 Binding-protein-dependent transport system inner membrane component CH57_413 PF12911 N-terminal TM domain of oligopeptide transport permease C CH57_4136 PF05638 Type VI secretion system effector, Hcp CH57_414 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CH57_414 PF00005 ABC transporter CH57_4148 PF00872 Transposase, Mutator family CH57_4149 PF00872 Transposase, Mutator family CH57_415 PF00005 ABC transporter CH57_4156 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CH57_4156 PF02894 Oxidoreductase family, C-terminal alpha/beta domain CH57_4158 PF00528 Binding-protein-dependent transport system inner membrane component CH57_4159 PF00665 Integrase core domain CH57_4159 PF02796 Helix-turn-helix domain of resolvase CH57_4160 PF02195 ParB-like nuclease domain CH57_4161 PF06006 Bacterial protein of unknown function (DUF905) CH57_4164 PF07128 Protein of unknown function (DUF1380) CH57_4166 PF01555 DNA methylase CH57_4169 PF08775 ParB family CH57_4169 PF02195 ParB-like nuclease domain CH57_4170 PF18607 ParA helix turn helix domain CH57_4170 PF13614 AAA domain CH57_4173 PF00239 Resolvase, N terminal domain CH57_4173 PF02796 Helix-turn-helix domain of resolvase CH57_4174 PF04754 Putative transposase, YhgA-like CH57_4176 PF13091 PLD-like domain CH57_4178 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) CH57_4179 PF02371 Transposase IS116/IS110/IS902 family CH57_4179 PF01548 Transposase CH57_418 PF00854 POT family CH57_4180 PF00872 Transposase, Mutator family CH57_4181 PF06445 GyrI-like small molecule binding domain CH57_4181 PF12833 Helix-turn-helix domain CH57_4182 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain CH57_4182 PF02753 Pili assembly chaperone PapD, C-terminal domain CH57_4183 PF00577 Outer membrane usher protein CH57_4183 PF13954 PapC N-terminal domain CH57_4183 PF13953 PapC C-terminal domain CH57_4184 PF09255 Caf1 Capsule antigen CH57_4188 PF06213 Cobalamin biosynthesis protein CobT CH57_4188 PF11775 Cobalamin biosynthesis protein CobT VWA domain CH57_419 PF04893 Yip1 domain CH57_4190 PF07733 Bacterial DNA polymerase III alpha NTPase domain CH57_4190 PF14579 Helix-hairpin-helix motif CH57_4190 PF02811 PHP domain CH57_4190 PF17657 Bacterial DNA polymerase III alpha subunit finger domain CH57_4191 PF00665 Integrase core domain CH57_4191 PF02796 Helix-turn-helix domain of resolvase CH57_4192 PF01695 IstB-like ATP binding protein CH57_4193 PF02413 Caudovirales tail fibre assembly protein, lambda gpK CH57_4195 PF07484 Phage Tail Collar Domain CH57_4195 PF07484 Phage Tail Collar Domain CH57_4195 PF03335 Phage tail fibre repeat CH57_4195 PF08400 Prophage tail fibre N-terminal CH57_4195 PF03335 Phage tail fibre repeat CH57_4195 PF08400 Prophage tail fibre N-terminal CH57_420 PF11656 YjbD family (DUF3811) CH57_421 PF01695 IstB-like ATP binding protein CH57_4219 PF00664 ABC transporter transmembrane region CH57_4219 PF03412 Peptidase C39 family CH57_4219 PF00005 ABC transporter CH57_422 PF02796 Helix-turn-helix domain of resolvase CH57_422 PF00665 Integrase core domain CH57_4220 PF02195 ParB-like nuclease domain CH57_4220 PF17762 HTH domain found in ParB protein CH57_4221 PF02195 ParB-like nuclease domain CH57_4221 PF17762 HTH domain found in ParB protein CH57_4222 PF17191 RecG wedge domain CH57_4222 PF00271 Helicase conserved C-terminal domain CH57_4222 PF00270 DEAD/DEAH box helicase CH57_423 PF00043 Glutathione S-transferase, C-terminal domain CH57_423 PF02798 Glutathione S-transferase, N-terminal domain CH57_4231 PF01797 Transposase IS200 like CH57_424 PF08543 Phosphomethylpyrimidine kinase CH57_4240 PF01051 Initiator Replication protein CH57_4248 PF00154 recA bacterial DNA recombination protein CH57_425 PF01479 S4 domain CH57_425 PF00579 tRNA synthetases class I (W and Y) CH57_4250 PF01367 5'-3' exonuclease, C-terminal SAM fold CH57_4250 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain CH57_4256 PF02811 PHP domain CH57_4256 PF14579 Helix-hairpin-helix motif CH57_4256 PF17657 Bacterial DNA polymerase III alpha subunit finger domain CH57_4256 PF07733 Bacterial DNA polymerase III alpha NTPase domain CH57_4257 PF01695 IstB-like ATP binding protein CH57_4258 PF02796 Helix-turn-helix domain of resolvase CH57_4258 PF00665 Integrase core domain CH57_4259 PF01695 IstB-like ATP binding protein CH57_426 PF01243 Pyridoxamine 5'-phosphate oxidase CH57_426 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region CH57_4260 PF01815 Rop protein CH57_4264 PF01278 Omptin family CH57_4266 PF05973 Phage derived protein Gp49-like (DUF891) CH57_427 PF09864 Membrane-bound lysozyme-inhibitor of c-type lysozyme CH57_428 PF03702 Anhydro-N-acetylmuramic acid kinase CH57_429 PF05433 Glycine zipper 2TM domain CH57_430 PF01047 MarR family CH57_431 PF00248 Aldo/keto reductase family CH57_432 PF06945 Protein of unknown function (DUF1289) CH57_433 PF08019 Phosphoethanolamine transferase EptA/EptB CH57_433 PF00884 Sulfatase CH57_434 PF16925 Tetracyclin repressor-like, C-terminal domain CH57_434 PF00440 Bacterial regulatory proteins, tetR family CH57_435 PF00724 NADH:flavin oxidoreductase / NADH oxidase family CH57_436 PF18807 Tripartite Tc toxins repeat CH57_436 PF14431 YwqJ-like deaminase CH57_437 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CH57_438 PF00929 Exonuclease CH57_439 PF00462 Glutaredoxin CH57_441 PF00877 NlpC/P60 family CH57_442 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain CH57_442 PF02777 Iron/manganese superoxide dismutases, C-terminal domain CH57_444 PF00356 Bacterial regulatory proteins, lacI family CH57_445 PF03466 LysR substrate binding domain CH57_445 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH57_446 PF07690 Major Facilitator Superfamily CH57_448 PF00677 Lumazine binding domain CH57_449 PF01554 MatE CH57_452 PF00224 Pyruvate kinase, barrel domain CH57_452 PF02887 Pyruvate kinase, alpha/beta domain CH57_453 PF04728 Lipoprotein leucine-zipper CH57_454 PF01797 Transposase IS200 like CH57_456 PF02796 Helix-turn-helix domain of resolvase CH57_456 PF00665 Integrase core domain CH57_457 PF01695 IstB-like ATP binding protein CH57_458 PF01476 LysM domain CH57_458 PF03734 L,D-transpeptidase catalytic domain CH57_458 PF17969 L,D-transpeptidase C-terminal domain CH57_459 PF02657 Fe-S metabolism associated domain CH57_460 PF00266 Aminotransferase class-V CH57_461 PF01458 Uncharacterized protein family (UPF0051) CH57_462 PF00005 ABC transporter CH57_463 PF01458 Uncharacterized protein family (UPF0051) CH57_464 PF01521 Iron-sulphur cluster biosynthesis CH57_465 PF03061 Thioesterase superfamily CH57_466 PF13183 4Fe-4S dicluster domain CH57_466 PF01565 FAD binding domain CH57_466 PF02913 FAD linked oxidases, C-terminal domain CH57_467 PF01594 AI-2E family transporter CH57_468 PF00391 PEP-utilising enzyme, mobile domain CH57_468 PF02896 PEP-utilising enzyme, TIM barrel domain CH57_468 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain CH57_469 PF03618 Kinase/pyrophosphorylase CH57_470 PF00793 DAHP synthetase I family CH57_471 PF02696 Uncharacterized ACR, YdiU/UPF0061 family CH57_472 PF02696 Uncharacterized ACR, YdiU/UPF0061 family CH57_473 PF03099 Biotin/lipoate A/B protein ligase family CH57_473 PF10437 Bacterial lipoate protein ligase C-terminus CH57_474 PF00877 NlpC/P60 family CH57_476 PF00892 EamA-like transporter family CH57_477 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase CH57_478 PF01522 Polysaccharide deacetylase CH57_479 PF01370 NAD dependent epimerase/dehydratase family CH57_479 PF00551 Formyl transferase CH57_479 PF02911 Formyl transferase, C-terminal domain CH57_480 PF00535 Glycosyl transferase family 2 CH57_481 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family CH57_482 PF00005 ABC transporter CH57_483 PF00255 Glutathione peroxidase CH57_484 PF01032 FecCD transport family CH57_486 PF00216 Bacterial DNA-binding protein CH57_487 PF01588 Putative tRNA binding domain CH57_487 PF03147 Ferredoxin-fold anticodon binding domain CH57_487 PF03484 tRNA synthetase B5 domain CH57_487 PF03483 B3/4 domain CH57_487 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain CH57_488 PF01409 tRNA synthetases class II core domain (F) CH57_488 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain CH57_489 PF00453 Ribosomal protein L20 CH57_49 PF01926 50S ribosome-binding GTPase CH57_49 PF06071 Protein of unknown function (DUF933) CH57_490 PF01632 Ribosomal protein L35 CH57_491 PF00707 Translation initiation factor IF-3, C-terminal domain CH57_491 PF05198 Translation initiation factor IF-3, N-terminal domain CH57_492 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain CH57_492 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CH57_492 PF03129 Anticodon binding domain CH57_492 PF02824 TGS domain CH57_493 PF13619 KTSC domain CH57_495 PF01914 MarC family integral membrane protein CH57_496 PF01464 Transglycosylase SLT domain CH57_497 PF01297 Zinc-uptake complex component A periplasmic CH57_498 PF00005 ABC transporter CH57_499 PF00950 ABC 3 transport family CH57_5 PF01695 IstB-like ATP binding protein CH57_50 PF01195 Peptidyl-tRNA hydrolase CH57_500 PF00950 ABC 3 transport family CH57_502 PF14002 YniB-like protein CH57_503 PF13419 Haloacid dehalogenase-like hydrolase CH57_504 PF00872 Transposase, Mutator family CH57_505 PF01266 FAD dependent oxidoreductase CH57_506 PF00196 Bacterial regulatory proteins, luxR family CH57_507 PF01594 AI-2E family transporter CH57_51 PF10762 Protein of unknown function (DUF2583) CH57_511 PF03472 Autoinducer binding domain CH57_511 PF00196 Bacterial regulatory proteins, luxR family CH57_512 PF00765 Autoinducer synthase CH57_513 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH57_513 PF03466 LysR substrate binding domain CH57_515 PF00083 Sugar (and other) transporter CH57_517 PF00248 Aldo/keto reductase family CH57_518 PF09618 CRISPR-associated protein (Cas_Csy4) CH57_519 PF09615 CRISPR-associated protein (Cas_Csy3) CH57_52 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase CH57_52 PF14572 Phosphoribosyl synthetase-associated domain CH57_520 PF09614 CRISPR-associated protein (Cas_Csy2) CH57_521 PF09611 CRISPR-associated protein (Cas_Csy1) CH57_523 PF01867 CRISPR associated protein Cas1 CH57_524 PF00924 Mechanosensitive ion channel CH57_528 PF04041 beta-1,4-mannooligosaccharide phosphorylase CH57_529 PF00528 Binding-protein-dependent transport system inner membrane component CH57_53 PF00288 GHMP kinases N terminal domain CH57_53 PF08544 GHMP kinases C terminal CH57_530 PF00528 Binding-protein-dependent transport system inner membrane component CH57_532 PF00356 Bacterial regulatory proteins, lacI family CH57_533 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I CH57_533 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II CH57_533 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III CH57_533 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain CH57_534 PF17912 MalK OB fold domain CH57_534 PF00005 ABC transporter CH57_536 PF05860 haemagglutination activity domain CH57_536 PF13332 Hemagglutinin repeat CH57_536 PF05594 Haemagluttinin repeat CH57_536 PF04829 Pre-toxin domain with VENN motif CH57_536 PF15526 Novel toxin 21 CH57_54 PF03550 Outer membrane lipoprotein LolB CH57_540 PF04829 Pre-toxin domain with VENN motif CH57_540 PF05860 haemagglutination activity domain CH57_540 PF13332 Hemagglutinin repeat CH57_540 PF13018 Extended Signal Peptide of Type V secretion system CH57_543 PF05860 haemagglutination activity domain CH57_543 PF13332 Hemagglutinin repeat CH57_543 PF13018 Extended Signal Peptide of Type V secretion system CH57_543 PF04829 Pre-toxin domain with VENN motif CH57_544 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB CH57_544 PF17287 POTRA domain CH57_544 PF08479 POTRA domain, ShlB-type CH57_545 PF00970 Oxidoreductase FAD-binding domain CH57_545 PF00175 Oxidoreductase NAD-binding domain CH57_545 PF00111 2Fe-2S iron-sulfur cluster binding domain CH57_546 PF00355 Rieske [2Fe-2S] domain CH57_546 PF00848 Ring hydroxylating alpha subunit (catalytic domain) CH57_547 PF02028 BCCT, betaine/carnitine/choline family transporter CH57_548 PF00180 Isocitrate/isopropylmalate dehydrogenase CH57_549 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH57_549 PF03466 LysR substrate binding domain CH57_55 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain CH57_55 PF01488 Shikimate / quinate 5-dehydrogenase CH57_55 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain CH57_550 PF00356 Bacterial regulatory proteins, lacI family CH57_551 PF02653 Branched-chain amino acid transport system / permease component CH57_552 PF00005 ABC transporter CH57_553 PF13407 Periplasmic binding protein domain CH57_554 PF08240 Alcohol dehydrogenase GroES-like domain CH57_554 PF00107 Zinc-binding dehydrogenase CH57_558 PF13505 Outer membrane protein beta-barrel domain CH57_559 PF00892 EamA-like transporter family CH57_56 PF03462 PCRF domain CH57_56 PF00472 RF-1 domain CH57_561 PF13649 Methyltransferase domain CH57_562 PF00210 Ferritin-like domain CH57_564 PF00497 Bacterial extracellular solute-binding proteins, family 3 CH57_565 PF00528 Binding-protein-dependent transport system inner membrane component CH57_566 PF00005 ABC transporter CH57_567 PF13426 PAS domain CH57_567 PF08447 PAS fold CH57_567 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CH57_568 PF02796 Helix-turn-helix domain of resolvase CH57_568 PF00665 Integrase core domain CH57_569 PF01695 IstB-like ATP binding protein CH57_57 PF17827 PrmC N-terminal domain CH57_57 PF13847 Methyltransferase domain CH57_570 PF05971 RNA methyltransferase CH57_571 PF07338 Protein of unknown function (DUF1471) CH57_572 PF02885 Glycosyl transferase family, helical bundle domain CH57_573 PF13193 AMP-binding enzyme C-terminal domain CH57_573 PF00501 AMP-binding enzyme CH57_574 PF13378 Enolase C-terminal domain-like CH57_575 PF00378 Enoyl-CoA hydratase/isomerase CH57_576 PF12697 Alpha/beta hydrolase family CH57_577 PF16582 Middle domain of thiamine pyrophosphate CH57_577 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CH57_577 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CH57_578 PF00425 chorismate binding enzyme CH57_58 PF04247 Invasion gene expression up-regulator, SirB CH57_580 PF05957 Bacterial protein of unknown function (DUF883) CH57_582 PF00920 Dehydratase family CH57_583 PF03928 Haem-degrading CH57_584 PF07690 Major Facilitator Superfamily CH57_585 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CH57_585 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CH57_586 PF00356 Bacterial regulatory proteins, lacI family CH57_588 PF00106 short chain dehydrogenase CH57_589 PF01202 Shikimate kinase CH57_59 PF13369 Transglutaminase-like superfamily CH57_590 PF04074 YhcH/YjgK/YiaL CH57_592 PF00361 Proton-conducting membrane transporter CH57_593 PF00361 Proton-conducting membrane transporter CH57_594 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus CH57_594 PF00361 Proton-conducting membrane transporter CH57_595 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L CH57_596 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 CH57_597 PF12838 4Fe-4S dicluster domain CH57_598 PF00146 NADH dehydrogenase CH57_599 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region CH57_599 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CH57_599 PF00384 Molybdopterin oxidoreductase CH57_599 PF01568 Molydopterin dinucleotide binding domain CH57_60 PF00793 DAHP synthetase I family CH57_600 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit CH57_600 PF10531 SLBB domain CH57_600 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region CH57_602 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit CH57_602 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit CH57_603 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit CH57_604 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 CH57_605 PF03466 LysR substrate binding domain CH57_605 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH57_606 PF00155 Aminotransferase class I and II CH57_608 PF03600 Citrate transporter CH57_608 PF02080 TrkA-C domain CH57_609 PF13419 Haloacid dehalogenase-like hydrolase CH57_61 PF01797 Transposase IS200 like CH57_610 PF03887 YfbU domain CH57_611 PF04217 Protein of unknown function, DUF412 CH57_612 PF00871 Acetokinase family CH57_613 PF01515 Phosphate acetyl/butaryl transferase CH57_613 PF07085 DRTGG domain CH57_614 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family CH57_614 PF00356 Bacterial regulatory proteins, lacI family CH57_615 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 CH57_617 PF00872 Transposase, Mutator family CH57_619 PF00905 Penicillin binding protein transpeptidase domain CH57_619 PF00912 Transglycosylase CH57_619 PF06832 Penicillin-Binding Protein C-terminus Family CH57_62 PF01740 STAS domain CH57_62 PF00916 Sulfate permease family CH57_620 PF17962 Bacterial macroglobulin domain 6 CH57_620 PF00207 Alpha-2-macroglobulin family CH57_620 PF17972 Bacterial Alpha-2-macroglobulin MG5 domain CH57_620 PF11974 Bacterial alpha-2-macroglobulin MG3 domain CH57_620 PF17973 Bacterial Alpha-2-macroglobulin MG10 domain CH57_620 PF07703 Alpha-2-macroglobulin bait region domain CH57_620 PF01835 MG2 domain CH57_625 PF00171 Aldehyde dehydrogenase family CH57_626 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CH57_626 PF00205 Thiamine pyrophosphate enzyme, central domain CH57_626 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CH57_627 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CH57_627 PF02894 Oxidoreductase family, C-terminal alpha/beta domain CH57_628 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CH57_628 PF02894 Oxidoreductase family, C-terminal alpha/beta domain CH57_629 PF13407 Periplasmic binding protein domain CH57_63 PF01695 IstB-like ATP binding protein CH57_630 PF00005 ABC transporter CH57_631 PF02653 Branched-chain amino acid transport system / permease component CH57_632 PF02894 Oxidoreductase family, C-terminal alpha/beta domain CH57_632 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CH57_633 PF00294 pfkB family carbohydrate kinase CH57_634 PF01261 Xylose isomerase-like TIM barrel CH57_635 PF04962 KduI/IolB family CH57_637 PF00005 ABC transporter CH57_637 PF00664 ABC transporter transmembrane region CH57_64 PF00665 Integrase core domain CH57_64 PF02796 Helix-turn-helix domain of resolvase CH57_642 PF00196 Bacterial regulatory proteins, luxR family CH57_644 PF00313 'Cold-shock' DNA-binding domain CH57_645 PF02537 CrcB-like protein, Camphor Resistance (CrcB) CH57_646 PF02416 mttA/Hcf106 family CH57_647 PF04055 Radical SAM superfamily CH57_647 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family CH57_648 PF03099 Biotin/lipoate A/B protein ligase family CH57_649 PF04359 Protein of unknown function (DUF493) CH57_65 PF01740 STAS domain CH57_65 PF00916 Sulfate permease family CH57_650 PF07943 Penicillin-binding protein 5, C-terminal domain CH57_650 PF00768 D-alanyl-D-alanine carboxypeptidase CH57_651 PF03330 Lytic transglycolase CH57_651 PF05036 Sporulation related domain CH57_652 PF01098 Cell cycle protein CH57_653 PF03717 Penicillin-binding Protein dimerisation domain CH57_653 PF00905 Penicillin binding protein transpeptidase domain CH57_654 PF02590 Predicted SPOUT methyltransferase CH57_656 PF01467 Cytidylyltransferase-like CH57_657 PF14840 Processivity clamp loader gamma complex DNA pol III C-term CH57_657 PF06144 DNA polymerase III, delta subunit CH57_658 PF04390 Lipopolysaccharide-assembly CH57_659 PF08264 Anticodon-binding domain of tRNA CH57_659 PF13603 Leucyl-tRNA synthetase, Domain 2 CH57_659 PF00133 tRNA synthetases class I (I, L, M and V) CH57_660 PF07295 Zinc-ribbon containing domain CH57_661 PF00005 ABC transporter CH57_662 PF00528 Binding-protein-dependent transport system inner membrane component CH57_663 PF00528 Binding-protein-dependent transport system inner membrane component CH57_664 PF00497 Bacterial extracellular solute-binding proteins, family 3 CH57_665 PF00795 Carbon-nitrogen hydrolase CH57_666 PF00571 CBS domain CH57_666 PF03471 Transporter associated domain CH57_667 PF02130 Uncharacterized protein family UPF0054 CH57_668 PF02562 PhoH-like protein CH57_669 PF00919 Uncharacterized protein family UPF0004 CH57_669 PF01938 TRAM domain CH57_669 PF04055 Radical SAM superfamily CH57_67 PF03009 Glycerophosphoryl diester phosphodiesterase family CH57_670 PF01494 FAD binding domain CH57_676 PF13537 Glutamine amidotransferase domain CH57_676 PF00733 Asparagine synthase CH57_677 PF13344 Haloacid dehalogenase-like hydrolase CH57_678 PF01047 MarR family CH57_678 PF00480 ROK family CH57_679 PF01979 Amidohydrolase family CH57_680 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase CH57_681 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 CH57_681 PF02378 Phosphotransferase system, EIIC CH57_681 PF00367 phosphotransferase system, EIIB CH57_682 PF01797 Transposase IS200 like CH57_683 PF00749 tRNA synthetases class I (E and Q), catalytic domain CH57_683 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain CH57_684 PF03573 outer membrane porin, OprD family CH57_685 PF03174 Chitobiase/beta-hexosaminidase C-terminal domain CH57_685 PF00728 Glycosyl hydrolase family 20, catalytic domain CH57_685 PF03173 Putative carbohydrate binding domain CH57_685 PF02838 Glycosyl hydrolase family 20, domain 2 CH57_686 PF00728 Glycosyl hydrolase family 20, catalytic domain CH57_686 PF03174 Chitobiase/beta-hexosaminidase C-terminal domain CH57_686 PF02838 Glycosyl hydrolase family 20, domain 2 CH57_686 PF03173 Putative carbohydrate binding domain CH57_687 PF01475 Ferric uptake regulator family CH57_688 PF00258 Flavodoxin CH57_689 PF01402 Ribbon-helix-helix protein, copG family CH57_69 PF00528 Binding-protein-dependent transport system inner membrane component CH57_691 PF12697 Alpha/beta hydrolase family CH57_693 PF01527 Transposase CH57_694 PF00589 Phage integrase family CH57_694 PF13356 Arm DNA-binding domain CH57_695 PF01695 IstB-like ATP binding protein CH57_696 PF00665 Integrase core domain CH57_696 PF02796 Helix-turn-helix domain of resolvase CH57_698 PF04069 Substrate binding domain of ABC-type glycine betaine transport system CH57_699 PF00528 Binding-protein-dependent transport system inner membrane component CH57_70 PF00528 Binding-protein-dependent transport system inner membrane component CH57_700 PF00005 ABC transporter CH57_700 PF00571 CBS domain CH57_701 PF00268 Ribonucleotide reductase, small chain CH57_702 PF02867 Ribonucleotide reductase, barrel domain CH57_702 PF00317 Ribonucleotide reductase, all-alpha domain CH57_702 PF08343 Ribonucleotide reductase N-terminal CH57_703 PF07972 NrdI Flavodoxin like CH57_705 PF06392 Acid shock protein repeat CH57_706 PF09400 Protein of unknown function (DUF2002) CH57_707 PF06711 Protein of unknown function (DUF1198) CH57_709 PF00872 Transposase, Mutator family CH57_71 PF08402 TOBE domain CH57_71 PF00005 ABC transporter CH57_711 PF00313 'Cold-shock' DNA-binding domain CH57_712 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CH57_713 PF00528 Binding-protein-dependent transport system inner membrane component CH57_714 PF12911 N-terminal TM domain of oligopeptide transport permease C CH57_714 PF00528 Binding-protein-dependent transport system inner membrane component CH57_715 PF00005 ABC transporter CH57_716 PF00005 ABC transporter CH57_718 PF00547 Urease, gamma subunit CH57_719 PF00699 Urease beta subunit CH57_72 PF01797 Transposase IS200 like CH57_720 PF01979 Amidohydrolase family CH57_720 PF00449 Urease alpha-subunit, N-terminal domain CH57_721 PF05194 UreE urease accessory protein, C-terminal domain CH57_721 PF02814 UreE urease accessory protein, N-terminal domain CH57_722 PF01730 UreF CH57_723 PF02492 CobW/HypB/UreG, nucleotide-binding domain CH57_724 PF01774 UreD urease accessory protein CH57_725 PF03253 Urea transporter CH57_726 PF03824 High-affinity nickel-transport protein CH57_727 PF06411 HdeA/HdeB family CH57_728 PF02254 TrkA-N domain CH57_728 PF07885 Ion channel CH57_729 PF02537 CrcB-like protein, Camphor Resistance (CrcB) CH57_73 PF00005 ABC transporter CH57_73 PF08402 TOBE domain CH57_730 PF02537 CrcB-like protein, Camphor Resistance (CrcB) CH57_731 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit CH57_732 PF02378 Phosphotransferase system, EIIC CH57_733 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit CH57_734 PF07883 Cupin domain CH57_734 PF12833 Helix-turn-helix domain CH57_735 PF04794 YdjC-like protein CH57_738 PF17206 SeqA protein N-terminal domain CH57_738 PF03925 SeqA protein C-terminal domain CH57_739 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain CH57_739 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III CH57_739 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II CH57_739 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I CH57_74 PF03009 Glycerophosphoryl diester phosphodiesterase family CH57_743 PF00486 Transcriptional regulatory protein, C terminal CH57_743 PF00072 Response regulator receiver domain CH57_744 PF02702 Osmosensitive K+ channel His kinase sensor domain CH57_744 PF00512 His Kinase A (phospho-acceptor) domain CH57_744 PF13493 Domain of unknown function (DUF4118) CH57_744 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH57_744 PF13492 GAF domain CH57_745 PF02669 K+-transporting ATPase, c chain CH57_747 PF03814 Potassium-transporting ATPase A subunit CH57_748 PF10725 Protein of unknown function (DUF2517) CH57_749 PF08349 Protein of unknown function (DUF1722) CH57_75 PF00480 ROK family CH57_75 PF01325 Iron dependent repressor, N-terminal DNA binding domain CH57_750 PF03441 FAD binding domain of DNA photolyase CH57_750 PF00875 DNA photolyase CH57_751 PF02112 cAMP phosphodiesterases class-II CH57_752 PF01784 NIF3 (NGG1p interacting factor 3) CH57_754 PF02682 Carboxyltransferase domain, subdomain C and D CH57_755 PF02626 Carboxyltransferase domain, subdomain A and B CH57_756 PF03746 LamB/YcsF family CH57_759 PF01470 Pyroglutamyl peptidase CH57_760 PF03167 Uracil DNA glycosylase superfamily CH57_761 PF01228 Glycine radical CH57_764 PF12796 Ankyrin repeats (3 copies) CH57_766 PF00271 Helicase conserved C-terminal domain CH57_766 PF00270 DEAD/DEAH box helicase CH57_767 PF05175 Methyltransferase small domain CH57_768 PF00890 FAD binding domain CH57_768 PF02910 Fumarate reductase flavoprotein C-term CH57_769 PF04542 Sigma-70 region 2 CH57_769 PF08281 Sigma-70, region 4 CH57_77 PF02811 PHP domain CH57_770 PF03872 Anti sigma-E protein RseA, N-terminal domain CH57_770 PF03873 Anti sigma-E protein RseA, C-terminal domain CH57_771 PF03888 MucB/RseB N-terminal domain CH57_771 PF17188 MucB/RseB C-terminal domain CH57_774 PF03144 Elongation factor Tu domain 2 CH57_774 PF00009 Elongation factor Tu GTP binding domain CH57_774 PF06421 GTP-binding protein LepA C-terminus CH57_774 PF00679 Elongation factor G C-terminus CH57_775 PF10502 Signal peptidase, peptidase S26 CH57_776 PF14622 Ribonuclease-III-like CH57_776 PF00035 Double-stranded RNA binding motif CH57_777 PF07650 KH domain CH57_777 PF01926 50S ribosome-binding GTPase CH57_778 PF11967 Recombination protein O N terminal CH57_778 PF02565 Recombination protein O C terminal CH57_779 PF02796 Helix-turn-helix domain of resolvase CH57_779 PF00665 Integrase core domain CH57_78 PF02613 Nitrate reductase delta subunit CH57_780 PF01695 IstB-like ATP binding protein CH57_783 PF04717 Type VI secretion system, phage-baseplate injector CH57_789 PF08274 PhnA Zinc-Ribbon CH57_789 PF03831 PhnA domain CH57_79 PF07273 Protein of unknown function (DUF1439) CH57_791 PF04011 LemA family CH57_794 PF00005 ABC transporter CH57_795 PF03379 CcmB protein CH57_796 PF01578 Cytochrome C assembly protein CH57_797 PF04995 Heme exporter protein D (CcmD) CH57_798 PF03100 CcmE CH57_799 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal CH57_799 PF01578 Cytochrome C assembly protein CH57_8 PF01979 Amidohydrolase family CH57_80 PF07690 Major Facilitator Superfamily CH57_800 PF08534 Redoxin CH57_801 PF03918 Cytochrome C biogenesis protein CH57_802 PF03918 Cytochrome C biogenesis protein CH57_803 PF04333 MlaA lipoprotein CH57_804 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) CH57_805 PF04175 Protein of unknown function (DUF406) CH57_806 PF00108 Thiolase, N-terminal domain CH57_806 PF02803 Thiolase, C-terminal domain CH57_807 PF00378 Enoyl-CoA hydratase/isomerase CH57_807 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain CH57_807 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain CH57_808 PF00300 Histidine phosphatase superfamily (branch 1) CH57_809 PF01713 Smr domain CH57_81 PF13302 Acetyltransferase (GNAT) domain CH57_810 PF05175 Methyltransferase small domain CH57_811 PF01264 Chorismate synthase CH57_812 PF03411 Penicillin-insensitive murein endopeptidase CH57_813 PF01925 Sulfite exporter TauE/SafE CH57_814 PF04315 Elongation factor P hydroxylase CH57_815 PF08891 YfcL protein CH57_816 PF05430 S-adenosyl-L-methionine-dependent methyltransferase CH57_816 PF01266 FAD dependent oxidoreductase CH57_817 PF02801 Beta-ketoacyl synthase, C-terminal domain CH57_817 PF00109 Beta-ketoacyl synthase, N-terminal domain CH57_818 PF01177 Asp/Glu/Hydantoin racemase CH57_819 PF00419 Fimbrial protein CH57_82 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CH57_821 PF00892 EamA-like transporter family CH57_823 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CH57_823 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CH57_823 PF11890 Domain of unknown function (DUF3410) CH57_824 PF01797 Transposase IS200 like CH57_825 PF02774 Semialdehyde dehydrogenase, dimerisation domain CH57_825 PF01118 Semialdehyde dehydrogenase, NAD binding domain CH57_826 PF01416 tRNA pseudouridine synthase CH57_827 PF09335 SNARE associated Golgi protein CH57_828 PF01039 Carboxyl transferase domain CH57_828 PF17848 Acetyl-coA carboxylase zinc finger domain CH57_829 PF08245 Mur ligase middle domain CH57_829 PF02875 Mur ligase family, glutamate ligase domain CH57_83 PF03023 Lipid II flippase MurJ CH57_830 PF05036 Sporulation related domain CH57_831 PF02674 Colicin V production protein CH57_832 PF00156 Phosphoribosyl transferase domain CH57_833 PF02441 Flavoprotein CH57_834 PF00497 Bacterial extracellular solute-binding proteins, family 3 CH57_835 PF00528 Binding-protein-dependent transport system inner membrane component CH57_836 PF00528 Binding-protein-dependent transport system inner membrane component CH57_837 PF00005 ABC transporter CH57_838 PF01370 NAD dependent epimerase/dehydratase family CH57_838 PF08338 Domain of unknown function (DUF1731) CH57_84 PF08479 POTRA domain, ShlB-type CH57_84 PF17287 POTRA domain CH57_84 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB CH57_840 PF12850 Calcineurin-like phosphoesterase superfamily domain CH57_841 PF00293 NUDIX domain CH57_842 PF03611 PTS system sugar-specific permease component CH57_843 PF00872 Transposase, Mutator family CH57_844 PF00905 Penicillin binding protein transpeptidase domain CH57_844 PF06832 Penicillin-Binding Protein C-terminus Family CH57_844 PF00912 Transglycosylase CH57_845 PF13693 Winged helix-turn-helix DNA-binding CH57_849 PF05638 Type VI secretion system effector, Hcp CH57_85 PF05860 haemagglutination activity domain CH57_85 PF13332 Hemagglutinin repeat CH57_852 PF13018 Extended Signal Peptide of Type V secretion system CH57_852 PF03212 Pertactin CH57_852 PF16168 Adhesin of bacterial autotransporter system, probable stalk CH57_852 PF03797 Autotransporter beta-domain CH57_854 PF08007 Cupin superfamily protein CH57_855 PF00872 Transposase, Mutator family CH57_86 PF03485 Arginyl tRNA synthetase N terminal domain CH57_86 PF00750 tRNA synthetases class I (R) CH57_86 PF05746 DALR anticodon binding domain CH57_860 PF00248 Aldo/keto reductase family CH57_861 PF00248 Aldo/keto reductase family CH57_862 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH57_862 PF03466 LysR substrate binding domain CH57_863 PF00665 Integrase core domain CH57_863 PF02796 Helix-turn-helix domain of resolvase CH57_864 PF01695 IstB-like ATP binding protein CH57_867 PF00782 Dual specificity phosphatase, catalytic domain CH57_868 PF12146 Serine aminopeptidase, S33 CH57_868 PF12147 Putative methyltransferase CH57_869 PF01553 Acyltransferase CH57_87 PF06185 YecM protein CH57_871 PF01066 CDP-alcohol phosphatidyltransferase CH57_878 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain CH57_878 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain CH57_88 PF03932 CutC family CH57_880 PF01797 Transposase IS200 like CH57_882 PF00586 AIR synthase related protein, N-terminal domain CH57_882 PF02769 AIR synthase related protein, C-terminal domain CH57_883 PF00551 Formyl transferase CH57_884 PF13302 Acetyltransferase (GNAT) domain CH57_887 PF00005 ABC transporter CH57_888 PF00528 Binding-protein-dependent transport system inner membrane component CH57_889 PF00528 Binding-protein-dependent transport system inner membrane component CH57_89 PF08003 Protein of unknown function (DUF1698) CH57_890 PF02503 Polyphosphate kinase middle domain CH57_890 PF13090 Polyphosphate kinase C-terminal domain 2 CH57_890 PF17941 Polyphosphate kinase C-terminal domain 1 CH57_890 PF13089 Polyphosphate kinase N-terminal domain CH57_891 PF02541 Ppx/GppA phosphatase family CH57_892 PF00571 CBS domain CH57_892 PF03448 MgtE intracellular N domain CH57_892 PF01769 Divalent cation transporter CH57_893 PF00012 Hsp70 protein CH57_894 PF00528 Binding-protein-dependent transport system inner membrane component CH57_895 PF00528 Binding-protein-dependent transport system inner membrane component CH57_897 PF00202 Aminotransferase class-III CH57_898 PF00155 Aminotransferase class I and II CH57_898 PF00392 Bacterial regulatory proteins, gntR family CH57_899 PF08402 TOBE domain CH57_899 PF00005 ABC transporter CH57_9 PF07702 UTRA domain CH57_9 PF00392 Bacterial regulatory proteins, gntR family CH57_90 PF13649 Methyltransferase domain CH57_900 PF13533 Biotin-lipoyl like CH57_901 PF00873 AcrB/AcrD/AcrF family CH57_902 PF00873 AcrB/AcrD/AcrF family CH57_903 PF07690 Major Facilitator Superfamily CH57_904 PF00672 HAMP domain CH57_904 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH57_904 PF00512 His Kinase A (phospho-acceptor) domain CH57_905 PF00486 Transcriptional regulatory protein, C terminal CH57_905 PF00072 Response regulator receiver domain CH57_906 PF07411 Domain of unknown function (DUF1508) CH57_908 PF00781 Diacylglycerol kinase catalytic domain CH57_91 PF01124 MAPEG family CH57_912 PF08543 Phosphomethylpyrimidine kinase CH57_915 PF00872 Transposase, Mutator family CH57_92 PF01904 Protein of unknown function DUF72 CH57_922 PF05638 Type VI secretion system effector, Hcp CH57_923 PF01797 Transposase IS200 like CH57_924 PF02540 NAD synthase CH57_924 PF00958 GMP synthase C terminal domain CH57_924 PF00117 Glutamine amidotransferase class-I CH57_925 PF00478 IMP dehydrogenase / GMP reductase domain CH57_925 PF00571 CBS domain CH57_926 PF13742 OB-fold nucleic acid binding domain CH57_926 PF02601 Exonuclease VII, large subunit CH57_927 PF07191 zinc-ribbons CH57_929 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal CH57_929 PF01926 50S ribosome-binding GTPase CH57_93 PF00152 tRNA synthetases class II (D, K and N) CH57_93 PF01336 OB-fold nucleic acid binding domain CH57_93 PF02938 GAD domain CH57_930 PF01797 Transposase IS200 like CH57_931 PF13360 PQQ-like domain CH57_932 PF09976 Tetratricopeptide repeat-like domain CH57_933 PF13393 Histidyl-tRNA synthetase CH57_933 PF03129 Anticodon binding domain CH57_934 PF04551 GcpE protein CH57_935 PF13464 Domain of unknown function (DUF4115) CH57_937 PF04055 Radical SAM superfamily CH57_938 PF00334 Nucleoside diphosphate kinase CH57_94 PF00293 NUDIX domain CH57_940 PF16168 Adhesin of bacterial autotransporter system, probable stalk CH57_940 PF03797 Autotransporter beta-domain CH57_940 PF03212 Pertactin CH57_941 PF03797 Autotransporter beta-domain CH57_941 PF03212 Pertactin CH57_941 PF16168 Adhesin of bacterial autotransporter system, probable stalk CH57_943 PF14581 SseB protein C-terminal domain CH57_943 PF07179 SseB protein N-terminal domain CH57_944 PF00883 Cytosol aminopeptidase family, catalytic domain CH57_944 PF12404 Peptidase CH57_945 PF04384 Iron-sulphur cluster assembly CH57_946 PF00111 2Fe-2S iron-sulfur cluster binding domain CH57_947 PF00012 Hsp70 protein CH57_948 PF00226 DnaJ domain CH57_948 PF07743 HSCB C-terminal oligomerisation domain CH57_949 PF01521 Iron-sulphur cluster biosynthesis CH57_95 PF01709 Transcriptional regulator CH57_950 PF01592 NifU-like N terminal domain CH57_951 PF00266 Aminotransferase class-V CH57_952 PF02082 Transcriptional regulator CH57_953 PF00588 SpoU rRNA Methylase family CH57_954 PF00459 Inositol monophosphatase family CH57_955 PF01797 Transposase IS200 like CH57_956 PF03824 High-affinity nickel-transport protein CH57_957 PF06226 Protein of unknown function (DUF1007) CH57_958 PF12832 MFS_1 like family CH57_959 PF00874 PRD domain CH57_96 PF02075 Crossover junction endodeoxyribonuclease RuvC CH57_960 PF13505 Outer membrane protein beta-barrel domain CH57_961 PF00464 Serine hydroxymethyltransferase CH57_962 PF00175 Oxidoreductase NAD-binding domain CH57_962 PF00970 Oxidoreductase FAD-binding domain CH57_962 PF00042 Globin CH57_965 PF00543 Nitrogen regulatory protein P-II CH57_966 PF00795 Carbon-nitrogen hydrolase CH57_966 PF02540 NAD synthase CH57_967 PF00072 Response regulator receiver domain CH57_967 PF00158 Sigma-54 interaction domain CH57_968 PF13942 YfhG lipoprotein CH57_969 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH57_969 PF00512 His Kinase A (phospho-acceptor) domain CH57_97 PF01330 RuvA N terminal domain CH57_97 PF07499 RuvA, C-terminal domain CH57_970 PF01797 Transposase IS200 like CH57_974 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain CH57_974 PF02769 AIR synthase related protein, C-terminal domain CH57_974 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal CH57_975 PF01464 Transglycosylase SLT domain CH57_975 PF00497 Bacterial extracellular solute-binding proteins, family 3 CH57_976 PF14437 MafB19-like deaminase CH57_978 PF01380 SIS domain CH57_979 PF01418 Helix-turn-helix domain, rpiR family CH57_979 PF01380 SIS domain CH57_98 PF05496 Holliday junction DNA helicase RuvB P-loop domain CH57_98 PF05491 RuvB C-terminal winged helix domain CH57_98 PF17864 RuvB AAA lid domain CH57_980 PF12838 4Fe-4S dicluster domain CH57_981 PF01797 Transposase IS200 like CH57_982 PF01648 4'-phosphopantetheinyl transferase superfamily CH57_983 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ CH57_984 PF01695 IstB-like ATP binding protein CH57_986 PF02796 Helix-turn-helix domain of resolvase CH57_986 PF00665 Integrase core domain CH57_99 PF00950 ABC 3 transport family CH57_994 PF00577 Outer membrane usher protein CH57_994 PF13954 PapC N-terminal domain CH57_994 PF13953 PapC C-terminal domain CH57_995 PF00872 Transposase, Mutator family CH57_996 PF00577 Outer membrane usher protein CH57_996 PF13954 PapC N-terminal domain CH57_996 PF13953 PapC C-terminal domain CH57_997 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain CH57_997 PF02753 Pili assembly chaperone PapD, C-terminal domain CH57_998 PF16970 Type-1 fimbrial protein, A CH57_999 PF10431 C-terminal, D2-small domain, of ClpB protein CH57_999 PF17871 AAA lid domain CH57_999 PF07724 AAA domain (Cdc48 subfamily) CH57_999 PF00004 ATPase family associated with various cellular activities (AAA)