locus-tag class description CH56_1 PF00156 Phosphoribosyl transferase domain CH56_10 PF00175 Oxidoreductase NAD-binding domain CH56_10 PF00970 Oxidoreductase FAD-binding domain CH56_10 PF00111 2Fe-2S iron-sulfur cluster binding domain CH56_100 PF03180 NLPA lipoprotein CH56_1000 PF00365 Phosphofructokinase CH56_1004 PF00939 Sodium:sulfate symporter transmembrane region CH56_1005 PF03737 Aldolase/RraA CH56_1006 PF02585 GlcNAc-PI de-N-acetylase CH56_1007 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH56_1007 PF03466 LysR substrate binding domain CH56_1008 PF00121 Triosephosphate isomerase CH56_1009 PF07305 Protein of unknown function (DUF1454) CH56_101 PF16358 RcsF lipoprotein CH56_1010 PF05656 Protein of unknown function (DUF805) CH56_1011 PF00970 Oxidoreductase FAD-binding domain CH56_1011 PF00175 Oxidoreductase NAD-binding domain CH56_1012 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded CH56_1013 PF00370 FGGY family of carbohydrate kinases, N-terminal domain CH56_1013 PF02782 FGGY family of carbohydrate kinases, C-terminal domain CH56_1014 PF00230 Major intrinsic protein CH56_1015 PF06005 Cell division protein ZapB CH56_1017 PF00664 ABC transporter transmembrane region CH56_1017 PF00005 ABC transporter CH56_1017 PF03412 Peptidase C39 family CH56_1018 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CH56_1018 PF00529 HlyD membrane-fusion protein of T1SS CH56_102 PF01980 tRNA-methyltransferase O CH56_102 PF18389 TrmO C-terminal domain CH56_1021 PF03737 Aldolase/RraA CH56_1022 PF01040 UbiA prenyltransferase family CH56_1023 PF10431 C-terminal, D2-small domain, of ClpB protein CH56_1023 PF07724 AAA domain (Cdc48 subfamily) CH56_1023 PF00004 ATPase family associated with various cellular activities (AAA) CH56_1024 PF00227 Proteasome subunit CH56_1025 PF05036 Sporulation related domain CH56_1026 PF00356 Bacterial regulatory proteins, lacI family CH56_1027 PF01797 Transposase IS200 like CH56_1028 PF00462 Glutaredoxin CH56_1028 PF08534 Redoxin CH56_1029 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CH56_1029 PF07992 Pyridine nucleotide-disulphide oxidoreductase CH56_103 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CH56_103 PF04073 Aminoacyl-tRNA editing domain CH56_103 PF03129 Anticodon binding domain CH56_1030 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH56_1030 PF03466 LysR substrate binding domain CH56_1032 PF00440 Bacterial regulatory proteins, tetR family CH56_1033 PF07226 Protein of unknown function (DUF1422) CH56_1034 PF05958 tRNA (Uracil-5-)-methyltransferase CH56_1035 PF07715 TonB-dependent Receptor Plug Domain CH56_1035 PF00593 TonB dependent receptor CH56_1036 PF01177 Asp/Glu/Hydantoin racemase CH56_104 PF17185 NlpE C-terminal OB domain CH56_104 PF04170 NlpE N-terminal domain CH56_1042 PF01527 Transposase CH56_1043 PF13683 Integrase core domain CH56_1043 PF13276 HTH-like domain CH56_1044 PF01367 5'-3' exonuclease, C-terminal SAM fold CH56_1044 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain CH56_1045 PF01695 IstB-like ATP binding protein CH56_1046 PF01695 IstB-like ATP binding protein CH56_1047 PF00665 Integrase core domain CH56_1047 PF02796 Helix-turn-helix domain of resolvase CH56_1048 PF00437 Type II/IV secretion system protein CH56_1049 PF01168 Alanine racemase, N-terminal domain CH56_105 PF00472 RF-1 domain CH56_1050 PF03807 NADP oxidoreductase coenzyme F420-dependent CH56_1050 PF14748 Pyrroline-5-carboxylate reductase dimerisation CH56_1051 PF02325 YGGT family CH56_1052 PF02594 Uncharacterised ACR, YggU family COG1872 CH56_1053 PF01725 Ham1 family CH56_1054 PF06969 HemN C-terminal domain CH56_1054 PF04055 Radical SAM superfamily CH56_1055 PF00872 Transposase, Mutator family CH56_1056 PF16671 Actin cross-linking domain CH56_1056 PF12146 Serine aminopeptidase, S33 CH56_1056 PF11647 Membrane Localization Domain CH56_1056 PF11713 Peptidase C80 family CH56_1056 PF07634 RtxA repeat CH56_1057 PF11101 Protein of unknown function (DUF2884) CH56_1058 PF11101 Protein of unknown function (DUF2884) CH56_1059 PF04960 Glutaminase CH56_106 PF07152 YaeQ protein CH56_1060 PF04320 Protein with unknown function (DUF469) CH56_1061 PF02390 Putative methyltransferase CH56_1062 PF00730 HhH-GPD superfamily base excision DNA repair protein CH56_1062 PF14815 NUDIX domain CH56_1062 PF10576 Iron-sulfur binding domain of endonuclease III CH56_1062 PF00633 Helix-hairpin-helix motif CH56_1063 PF04362 Bacterial Fe(2+) trafficking CH56_1064 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain CH56_1064 PF01464 Transglycosylase SLT domain CH56_1066 PF07715 TonB-dependent Receptor Plug Domain CH56_1067 PF02653 Branched-chain amino acid transport system / permease component CH56_1068 PF00005 ABC transporter CH56_1069 PF13407 Periplasmic binding protein domain CH56_107 PF06786 Uncharacterised protein family (UPF0253) CH56_1070 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain CH56_1070 PF01276 Orn/Lys/Arg decarboxylase, major domain CH56_1070 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain CH56_1072 PF02899 Phage integrase, N-terminal SAM-like domain CH56_1072 PF00589 Phage integrase family CH56_1074 PF03400 IS1 transposase CH56_1075 PF03811 InsA N-terminal domain CH56_1075 PF12759 InsA C-terminal domain CH56_1079 PF10431 C-terminal, D2-small domain, of ClpB protein CH56_1079 PF17871 AAA lid domain CH56_1079 PF07724 AAA domain (Cdc48 subfamily) CH56_1079 PF00004 ATPase family associated with various cellular activities (AAA) CH56_108 PF07073 Modulator of Rho-dependent transcription termination (ROF) CH56_1081 PF05736 OprF membrane domain CH56_1081 PF00691 OmpA family CH56_1088 PF03811 InsA N-terminal domain CH56_1088 PF12759 InsA C-terminal domain CH56_109 PF00034 Cytochrome c CH56_1090 PF02517 CPBP intramembrane metalloprotease CH56_1092 PF00196 Bacterial regulatory proteins, luxR family CH56_1092 PF03472 Autoinducer binding domain CH56_1093 PF00765 Autoinducer synthase CH56_1094 PF00872 Transposase, Mutator family CH56_1098 PF06276 Ferric iron reductase FhuF-like transporter CH56_1098 PF04183 IucA / IucC family CH56_1099 PF06276 Ferric iron reductase FhuF-like transporter CH56_1099 PF04183 IucA / IucC family CH56_11 PF02508 Rnf-Nqr subunit, membrane protein CH56_110 PF11734 TilS substrate C-terminal domain CH56_110 PF09179 TilS substrate binding domain CH56_110 PF01171 PP-loop family CH56_1101 PF06276 Ferric iron reductase FhuF-like transporter CH56_1101 PF04183 IucA / IucC family CH56_1102 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) CH56_1103 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) CH56_1104 PF07715 TonB-dependent Receptor Plug Domain CH56_1104 PF00593 TonB dependent receptor CH56_1106 PF00665 Integrase core domain CH56_1106 PF13276 HTH-like domain CH56_1106 PF13333 Integrase core domain CH56_1108 PF05433 Glycine zipper 2TM domain CH56_1109 PF05433 Glycine zipper 2TM domain CH56_111 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CH56_1113 PF00691 OmpA family CH56_1113 PF13677 Membrane MotB of proton-channel complex MotA/MotB CH56_1114 PF01618 MotA/TolQ/ExbB proton channel family CH56_1115 PF04545 Sigma-70, region 4 CH56_1115 PF04542 Sigma-70 region 2 CH56_112 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit CH56_1120 PF02465 Flagellar hook-associated protein 2 N-terminus CH56_1120 PF07196 Flagellin hook IN motif CH56_1120 PF07195 Flagellar hook-associated protein 2 C-terminus CH56_1121 PF00669 Bacterial flagellin N-terminal helical region CH56_1121 PF00700 Bacterial flagellin C-terminal helical region CH56_1122 PF00872 Transposase, Mutator family CH56_1123 PF00669 Bacterial flagellin N-terminal helical region CH56_1123 PF00700 Bacterial flagellin C-terminal helical region CH56_1124 PF00669 Bacterial flagellin N-terminal helical region CH56_1124 PF00700 Bacterial flagellin C-terminal helical region CH56_1125 PF00700 Bacterial flagellin C-terminal helical region CH56_1125 PF00669 Bacterial flagellin N-terminal helical region CH56_1126 PF00486 Transcriptional regulatory protein, C terminal CH56_1126 PF18500 CadC C-terminal domain 1 CH56_113 PF07733 Bacterial DNA polymerase III alpha NTPase domain CH56_113 PF01336 OB-fold nucleic acid binding domain CH56_113 PF14579 Helix-hairpin-helix motif CH56_113 PF02811 PHP domain CH56_113 PF17657 Bacterial DNA polymerase III alpha subunit finger domain CH56_1130 PF00460 Flagella basal body rod protein CH56_1130 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CH56_1132 PF02119 Flagellar P-ring protein CH56_1133 PF02107 Flagellar L-ring protein CH56_1134 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CH56_1134 PF00460 Flagella basal body rod protein CH56_1135 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CH56_1135 PF00460 Flagella basal body rod protein CH56_1136 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CH56_1136 PF00460 Flagella basal body rod protein CH56_1136 PF07559 Flagellar basal body protein FlaE CH56_1137 PF13860 FlgD Ig-like domain CH56_1137 PF13861 FlgD Tudor-like domain CH56_1137 PF03963 Flagellar hook capping protein - N-terminal region CH56_1138 PF00460 Flagella basal body rod protein CH56_1138 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CH56_1139 PF00460 Flagella basal body rod protein CH56_114 PF01351 Ribonuclease HII CH56_1140 PF13144 Chaperone for flagella basal body P-ring formation CH56_1144 PF18269 T3SS EscN ATPase C-terminal domain CH56_1144 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CH56_1147 PF01514 Secretory protein of YscJ/FliF family CH56_1147 PF08345 Flagellar M-ring protein C-terminal CH56_1148 PF02049 Flagellar hook-basal body complex protein FliE CH56_1149 PF02954 Bacterial regulatory protein, Fis family CH56_1149 PF00072 Response regulator receiver domain CH56_1149 PF00158 Sigma-54 interaction domain CH56_115 PF02684 Lipid-A-disaccharide synthetase CH56_1152 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term CH56_1153 PF00813 FliP family CH56_1154 PF01313 Bacterial export proteins, family 3 CH56_1155 PF01311 Bacterial export proteins, family 1 CH56_1156 PF01312 FlhB HrpN YscU SpaS Family CH56_1157 PF00771 FHIPEP family CH56_116 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 CH56_116 PF00132 Bacterial transferase hexapeptide (six repeats) CH56_1161 PF01497 Periplasmic binding protein CH56_1162 PF09222 Fimbrial adhesin F17-AG, lectin domain CH56_1162 PF00419 Fimbrial protein CH56_1163 PF02753 Pili assembly chaperone PapD, C-terminal domain CH56_1163 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain CH56_1164 PF13953 PapC C-terminal domain CH56_1164 PF13954 PapC N-terminal domain CH56_1164 PF00577 Outer membrane usher protein CH56_1168 PF00263 Bacterial type II and III secretion system protein CH56_1168 PF13629 Pilus formation protein N terminal region CH56_1168 PF04972 BON domain CH56_1169 PF00263 Bacterial type II and III secretion system protein CH56_1169 PF13629 Pilus formation protein N terminal region CH56_1169 PF04972 BON domain CH56_117 PF07977 FabA-like domain CH56_1172 PF00437 Type II/IV secretion system protein CH56_1179 PF02472 Biopolymer transport protein ExbD/TolR CH56_118 PF00132 Bacterial transferase hexapeptide (six repeats) CH56_118 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD CH56_1181 PF01618 MotA/TolQ/ExbB proton channel family CH56_1182 PF01053 Cys/Met metabolism PLP-dependent enzyme CH56_1183 PF09335 SNARE associated Golgi protein CH56_1184 PF00465 Iron-containing alcohol dehydrogenase CH56_1185 PF00248 Aldo/keto reductase family CH56_1186 PF04055 Radical SAM superfamily CH56_1186 PF11842 Domain of unknown function (DUF3362) CH56_1186 PF08497 Radical SAM N-terminal CH56_1187 PF11842 Domain of unknown function (DUF3362) CH56_1187 PF08497 Radical SAM N-terminal CH56_1187 PF04055 Radical SAM superfamily CH56_1188 PF07731 Multicopper oxidase CH56_1188 PF07732 Multicopper oxidase CH56_1189 PF01553 Acyltransferase CH56_119 PF03938 Outer membrane protein (OmpH-like) CH56_1190 PF03989 DNA gyrase C-terminal domain, beta-propeller CH56_1190 PF00521 DNA gyrase/topoisomerase IV, subunit A CH56_1191 PF02525 Flavodoxin-like fold CH56_1192 PF03466 LysR substrate binding domain CH56_1192 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH56_1193 PF00204 DNA gyrase B CH56_1193 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH56_1193 PF01751 Toprim domain CH56_1193 PF00986 DNA gyrase B subunit, carboxyl terminus CH56_1194 PF05728 Uncharacterised protein family (UPF0227) CH56_1195 PF00149 Calcineurin-like phosphoesterase CH56_1196 PF06853 Protein of unknown function (DUF1249) CH56_1197 PF00293 NUDIX domain CH56_1198 PF02321 Outer membrane efflux protein CH56_12 PF02508 Rnf-Nqr subunit, membrane protein CH56_120 PF07244 Surface antigen variable number repeat CH56_120 PF01103 Surface antigen CH56_1201 PF06693 Protein of unknown function (DUF1190) CH56_1202 PF03738 Glutathionylspermidine synthase preATP-grasp CH56_1203 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase CH56_1204 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase CH56_1206 PF04380 Membrane fusogenic activity CH56_1207 PF13520 Amino acid permease CH56_1208 PF01467 Cytidylyltransferase-like CH56_1208 PF00294 pfkB family carbohydrate kinase CH56_1209 PF03710 Glutamate-ammonia ligase adenylyltransferase CH56_1209 PF08335 GlnD PII-uridylyltransferase CH56_121 PF17820 PDZ domain CH56_121 PF02163 Peptidase family M50 CH56_1210 PF01928 CYTH domain CH56_1211 PF08239 Bacterial SH3 domain CH56_1212 PF12627 Probable RNA and SrmB- binding site of polymerase A CH56_1212 PF01966 HD domain CH56_1212 PF01743 Poly A polymerase head domain CH56_1213 PF02673 Bacitracin resistance protein BacA CH56_1214 PF02152 Dihydroneopterin aldolase CH56_1215 PF02660 Glycerol-3-phosphate acyltransferase CH56_1216 PF00814 Glycoprotease family CH56_1217 PF01165 Ribosomal protein S21 CH56_1218 PF10410 DnaB-helicase binding domain of primase CH56_1218 PF08278 DNA primase DnaG DnaB-binding CH56_1218 PF01807 CHC2 zinc finger CH56_1218 PF08275 DNA primase catalytic core, N-terminal domain CH56_1219 PF04546 Sigma-70, non-essential region CH56_1219 PF00140 Sigma-70 factor, region 1.2 CH56_1219 PF04539 Sigma-70 region 3 CH56_1219 PF04545 Sigma-70, region 4 CH56_1219 PF03979 Sigma-70 factor, region 1.1 CH56_1219 PF04542 Sigma-70 region 2 CH56_123 PF01255 Putative undecaprenyl diphosphate synthase CH56_1230 PF03466 LysR substrate binding domain CH56_1230 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH56_1231 PF00665 Integrase core domain CH56_1231 PF02796 Helix-turn-helix domain of resolvase CH56_1232 PF01695 IstB-like ATP binding protein CH56_1233 PF00589 Phage integrase family CH56_1233 PF13356 Arm DNA-binding domain CH56_1234 PF01527 Transposase CH56_1236 PF12697 Alpha/beta hydrolase family CH56_1238 PF01402 Ribbon-helix-helix protein, copG family CH56_1239 PF00258 Flavodoxin CH56_124 PF13288 DXP reductoisomerase C-terminal domain CH56_124 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase CH56_124 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain CH56_1240 PF01475 Ferric uptake regulator family CH56_1241 PF03174 Chitobiase/beta-hexosaminidase C-terminal domain CH56_1241 PF02838 Glycosyl hydrolase family 20, domain 2 CH56_1241 PF03173 Putative carbohydrate binding domain CH56_1241 PF00728 Glycosyl hydrolase family 20, catalytic domain CH56_1242 PF03174 Chitobiase/beta-hexosaminidase C-terminal domain CH56_1242 PF00728 Glycosyl hydrolase family 20, catalytic domain CH56_1242 PF02838 Glycosyl hydrolase family 20, domain 2 CH56_1242 PF03173 Putative carbohydrate binding domain CH56_1243 PF03573 outer membrane porin, OprD family CH56_1244 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain CH56_1244 PF00749 tRNA synthetases class I (E and Q), catalytic domain CH56_125 PF01765 Ribosome recycling factor CH56_1252 PF00733 Asparagine synthase CH56_1252 PF13537 Glutamine amidotransferase domain CH56_1253 PF13344 Haloacid dehalogenase-like hydrolase CH56_1254 PF01047 MarR family CH56_1254 PF00480 ROK family CH56_1255 PF01979 Amidohydrolase family CH56_1256 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase CH56_1257 PF00367 phosphotransferase system, EIIB CH56_1257 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 CH56_1257 PF02378 Phosphotransferase system, EIIC CH56_1259 PF00356 Bacterial regulatory proteins, lacI family CH56_1259 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family CH56_126 PF00696 Amino acid kinase family CH56_1260 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 CH56_1262 PF03611 PTS system sugar-specific permease component CH56_1263 PF00293 NUDIX domain CH56_1264 PF12850 Calcineurin-like phosphoesterase superfamily domain CH56_1266 PF01370 NAD dependent epimerase/dehydratase family CH56_1266 PF08338 Domain of unknown function (DUF1731) CH56_1267 PF00005 ABC transporter CH56_1268 PF00528 Binding-protein-dependent transport system inner membrane component CH56_1269 PF00528 Binding-protein-dependent transport system inner membrane component CH56_127 PF00889 Elongation factor TS CH56_1270 PF00497 Bacterial extracellular solute-binding proteins, family 3 CH56_1271 PF02441 Flavoprotein CH56_1272 PF00156 Phosphoribosyl transferase domain CH56_1273 PF02674 Colicin V production protein CH56_1274 PF05036 Sporulation related domain CH56_1275 PF08245 Mur ligase middle domain CH56_1275 PF02875 Mur ligase family, glutamate ligase domain CH56_1276 PF17848 Acetyl-coA carboxylase zinc finger domain CH56_1276 PF01039 Carboxyl transferase domain CH56_1277 PF09335 SNARE associated Golgi protein CH56_1278 PF01416 tRNA pseudouridine synthase CH56_1279 PF01118 Semialdehyde dehydrogenase, NAD binding domain CH56_1279 PF02774 Semialdehyde dehydrogenase, dimerisation domain CH56_128 PF00318 Ribosomal protein S2 CH56_1280 PF01797 Transposase IS200 like CH56_1281 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CH56_1281 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CH56_1281 PF11890 Domain of unknown function (DUF3410) CH56_1283 PF00892 EamA-like transporter family CH56_1285 PF00419 Fimbrial protein CH56_1286 PF01177 Asp/Glu/Hydantoin racemase CH56_1287 PF00109 Beta-ketoacyl synthase, N-terminal domain CH56_1287 PF02801 Beta-ketoacyl synthase, C-terminal domain CH56_1288 PF05430 S-adenosyl-L-methionine-dependent methyltransferase CH56_1288 PF01266 FAD dependent oxidoreductase CH56_1289 PF08891 YfcL protein CH56_129 PF00557 Metallopeptidase family M24 CH56_1290 PF04315 Elongation factor P hydroxylase CH56_1291 PF01925 Sulfite exporter TauE/SafE CH56_1292 PF03411 Penicillin-insensitive murein endopeptidase CH56_1293 PF01264 Chorismate synthase CH56_1294 PF05175 Methyltransferase small domain CH56_1295 PF01713 Smr domain CH56_1296 PF00300 Histidine phosphatase superfamily (branch 1) CH56_1297 PF00378 Enoyl-CoA hydratase/isomerase CH56_1297 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain CH56_1297 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain CH56_1298 PF02803 Thiolase, C-terminal domain CH56_1298 PF00108 Thiolase, N-terminal domain CH56_1299 PF04175 Protein of unknown function (DUF406) CH56_13 PF04205 FMN-binding domain CH56_130 PF00557 Metallopeptidase family M24 CH56_1300 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) CH56_1301 PF04333 MlaA lipoprotein CH56_1302 PF03918 Cytochrome C biogenesis protein CH56_1303 PF03918 Cytochrome C biogenesis protein CH56_1304 PF08534 Redoxin CH56_1305 PF01578 Cytochrome C assembly protein CH56_1305 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal CH56_1306 PF03100 CcmE CH56_1307 PF04995 Heme exporter protein D (CcmD) CH56_1308 PF01578 Cytochrome C assembly protein CH56_1309 PF03379 CcmB protein CH56_131 PF01966 HD domain CH56_131 PF01842 ACT domain CH56_131 PF01909 Nucleotidyltransferase domain CH56_131 PF08335 GlnD PII-uridylyltransferase CH56_1310 PF00005 ABC transporter CH56_1313 PF04011 LemA family CH56_1315 PF00872 Transposase, Mutator family CH56_1316 PF03992 Antibiotic biosynthesis monooxygenase CH56_1317 PF01979 Amidohydrolase family CH56_1318 PF06183 DinI-like family CH56_1319 PF00872 Transposase, Mutator family CH56_132 PF14602 Hexapeptide repeat of succinyl-transferase CH56_132 PF00132 Bacterial transferase hexapeptide (six repeats) CH56_132 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal CH56_1320 PF13991 BssS protein family CH56_1327 PF05638 Type VI secretion system effector, Hcp CH56_1328 PF01797 Transposase IS200 like CH56_1329 PF00958 GMP synthase C terminal domain CH56_1329 PF02540 NAD synthase CH56_1329 PF00117 Glutamine amidotransferase class-I CH56_133 PF11944 Protein of unknown function (DUF3461) CH56_1330 PF00571 CBS domain CH56_1330 PF00478 IMP dehydrogenase / GMP reductase domain CH56_1331 PF13742 OB-fold nucleic acid binding domain CH56_1331 PF02601 Exonuclease VII, large subunit CH56_1332 PF07191 zinc-ribbons CH56_1334 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal CH56_1334 PF01926 50S ribosome-binding GTPase CH56_1335 PF13360 PQQ-like domain CH56_1336 PF09976 Tetratricopeptide repeat-like domain CH56_1337 PF03129 Anticodon binding domain CH56_1337 PF13393 Histidyl-tRNA synthetase CH56_1338 PF04551 GcpE protein CH56_1339 PF13464 Domain of unknown function (DUF4115) CH56_134 PF00258 Flavodoxin CH56_1341 PF04055 Radical SAM superfamily CH56_1342 PF00334 Nucleoside diphosphate kinase CH56_1344 PF16168 Adhesin of bacterial autotransporter system, probable stalk CH56_1344 PF03797 Autotransporter beta-domain CH56_1344 PF03212 Pertactin CH56_1345 PF16168 Adhesin of bacterial autotransporter system, probable stalk CH56_1345 PF03797 Autotransporter beta-domain CH56_1345 PF03212 Pertactin CH56_1347 PF14581 SseB protein C-terminal domain CH56_1347 PF07179 SseB protein N-terminal domain CH56_1348 PF12404 Peptidase CH56_1348 PF00883 Cytosol aminopeptidase family, catalytic domain CH56_1349 PF04384 Iron-sulphur cluster assembly CH56_135 PF00849 RNA pseudouridylate synthase CH56_1350 PF00111 2Fe-2S iron-sulfur cluster binding domain CH56_1351 PF00012 Hsp70 protein CH56_1352 PF07743 HSCB C-terminal oligomerisation domain CH56_1352 PF00226 DnaJ domain CH56_1353 PF01521 Iron-sulphur cluster biosynthesis CH56_1354 PF01592 NifU-like N terminal domain CH56_1355 PF00266 Aminotransferase class-V CH56_1356 PF02082 Transcriptional regulator CH56_1357 PF00588 SpoU rRNA Methylase family CH56_1358 PF00459 Inositol monophosphatase family CH56_1359 PF03824 High-affinity nickel-transport protein CH56_136 PF04287 tRNA pseudouridine synthase C CH56_1360 PF06226 Protein of unknown function (DUF1007) CH56_1361 PF12832 MFS_1 like family CH56_1362 PF00874 PRD domain CH56_1363 PF13505 Outer membrane protein beta-barrel domain CH56_1364 PF00464 Serine hydroxymethyltransferase CH56_1365 PF00042 Globin CH56_1365 PF00175 Oxidoreductase NAD-binding domain CH56_1365 PF00970 Oxidoreductase FAD-binding domain CH56_1366 PF14502 Helix-turn-helix domain CH56_1366 PF14503 YhfZ C-terminal domain CH56_1367 PF00665 Integrase core domain CH56_1367 PF02796 Helix-turn-helix domain of resolvase CH56_1369 PF01695 IstB-like ATP binding protein CH56_1370 PF06968 Biotin and Thiamin Synthesis associated domain CH56_1370 PF04055 Radical SAM superfamily CH56_1371 PF05690 Thiazole biosynthesis protein ThiG CH56_1373 PF00899 ThiF family CH56_1374 PF02581 Thiamine monophosphate synthase CH56_1375 PF01964 Radical SAM ThiC family CH56_1375 PF13667 ThiC-associated domain CH56_1376 PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ CH56_1377 PF00293 NUDIX domain CH56_1377 PF09297 NADH pyrophosphatase zinc ribbon domain CH56_1379 PF01208 Uroporphyrinogen decarboxylase (URO-D) CH56_138 PF02796 Helix-turn-helix domain of resolvase CH56_138 PF00665 Integrase core domain CH56_1380 PF04493 Endonuclease V CH56_1381 PF04222 Protein of unknown function (DUF416) CH56_1382 PF00216 Bacterial DNA-binding protein CH56_1383 PF07356 Protein of unknown function (DUF1481) CH56_1384 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain CH56_1384 PF02843 Phosphoribosylglycinamide synthetase, C domain CH56_1384 PF02844 Phosphoribosylglycinamide synthetase, N domain CH56_1385 PF01808 AICARFT/IMPCHase bienzyme CH56_1385 PF02142 MGS-like domain CH56_139 PF01695 IstB-like ATP binding protein CH56_1394 PF13407 Periplasmic binding protein domain CH56_1395 PF00005 ABC transporter CH56_1396 PF02653 Branched-chain amino acid transport system / permease component CH56_1397 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH56_1397 PF03466 LysR substrate binding domain CH56_1398 PF02653 Branched-chain amino acid transport system / permease component CH56_1399 PF04219 Protein of unknown function, DUF CH56_14 PF03116 NQR2, RnfD, RnfE family CH56_140 PF00266 Aminotransferase class-V CH56_1400 PF01078 Magnesium chelatase, subunit ChlI CH56_1400 PF13335 Magnesium chelatase, subunit ChlI C-terminal CH56_1401 PF00205 Thiamine pyrophosphate enzyme, central domain CH56_1401 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CH56_1401 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CH56_1403 PF01063 Amino-transferase class IV CH56_1404 PF00920 Dehydratase family CH56_1405 PF00291 Pyridoxal-phosphate dependent enzyme CH56_1405 PF00585 C-terminal regulatory domain of Threonine dehydratase CH56_1411 PF03466 LysR substrate binding domain CH56_1411 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH56_1412 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain CH56_1412 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain CH56_1417 PF01320 Colicin immunity protein / pyocin immunity protein CH56_1418 PF02753 Pili assembly chaperone PapD, C-terminal domain CH56_1418 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain CH56_142 PF00528 Binding-protein-dependent transport system inner membrane component CH56_1420 PF13953 PapC C-terminal domain CH56_1420 PF13954 PapC N-terminal domain CH56_1420 PF00577 Outer membrane usher protein CH56_1421 PF02753 Pili assembly chaperone PapD, C-terminal domain CH56_1421 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain CH56_1425 PF13361 UvrD-like helicase C-terminal domain CH56_1425 PF00580 UvrD/REP helicase N-terminal domain CH56_1426 PF02541 Ppx/GppA phosphatase family CH56_1427 PF00271 Helicase conserved C-terminal domain CH56_1427 PF00270 DEAD/DEAH box helicase CH56_1428 PF00085 Thioredoxin CH56_1429 PF07497 Rho termination factor, RNA-binding domain CH56_1429 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CH56_1429 PF07498 Rho termination factor, N-terminal domain CH56_143 PF00497 Bacterial extracellular solute-binding proteins, family 3 CH56_1430 PF00953 Glycosyl transferase family 4 CH56_1431 PF02706 Chain length determinant protein CH56_1432 PF02350 UDP-N-acetylglucosamine 2-epimerase CH56_1433 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain CH56_1433 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain CH56_1433 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain CH56_1434 PF16363 GDP-mannose 4,6 dehydratase CH56_1435 PF00483 Nucleotidyl transferase CH56_1437 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family CH56_1438 PF01943 Polysaccharide biosynthesis protein CH56_1439 PF07429 4-alpha-L-fucosyltransferase glycosyl transferase group 56 CH56_1440 PF06899 WzyE protein, O-antigen assembly polymerase CH56_1441 PF03808 Glycosyl transferase WecB/TagA/CpsF family CH56_1442 PF00324 Amino acid permease CH56_1448 PF00665 Integrase core domain CH56_1448 PF02796 Helix-turn-helix domain of resolvase CH56_1449 PF01695 IstB-like ATP binding protein CH56_1451 PF07719 Tetratricopeptide repeat CH56_1451 PF07219 HemY protein N-terminus CH56_1452 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase CH56_1453 PF02602 Uroporphyrinogen-III synthase HemD CH56_1454 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain CH56_1454 PF03900 Porphobilinogen deaminase, C-terminal domain CH56_1455 PF01295 Adenylate cyclase, class-I CH56_1455 PF12633 Adenylate cyclase NT domain CH56_1456 PF01491 Frataxin-like domain CH56_1457 PF13627 Prokaryotic lipoprotein-attachment site CH56_1458 PF01678 Diaminopimelate epimerase CH56_1459 PF04340 Protein of unknown function, DUF484 CH56_146 PF01425 Amidase CH56_1460 PF02899 Phage integrase, N-terminal SAM-like domain CH56_1460 PF00589 Phage integrase family CH56_1461 PF13419 Haloacid dehalogenase-like hydrolase CH56_1462 PF00580 UvrD/REP helicase N-terminal domain CH56_1462 PF13361 UvrD-like helicase C-terminal domain CH56_1465 PF09370 Phosphoenolpyruvate hydrolase-like CH56_1467 PF01544 CorA-like Mg2+ transporter protein CH56_1468 PF00892 EamA-like transporter family CH56_1469 PF03061 Thioesterase superfamily CH56_1470 PF02253 Phospholipase A1 CH56_1471 PF00570 HRDC domain CH56_1471 PF00270 DEAD/DEAH box helicase CH56_1471 PF16124 RecQ zinc-binding CH56_1471 PF09382 RQC domain CH56_1471 PF00271 Helicase conserved C-terminal domain CH56_1472 PF01810 LysE type translocator CH56_1473 PF01810 LysE type translocator CH56_1474 PF12146 Serine aminopeptidase, S33 CH56_1477 PF03009 Glycerophosphoryl diester phosphodiesterase family CH56_1478 PF00872 Transposase, Mutator family CH56_1479 PF03009 Glycerophosphoryl diester phosphodiesterase family CH56_148 PF07690 Major Facilitator Superfamily CH56_1480 PF04324 BFD-like [2Fe-2S] binding domain CH56_1480 PF01266 FAD dependent oxidoreductase CH56_1481 PF04324 BFD-like [2Fe-2S] binding domain CH56_1481 PF01266 FAD dependent oxidoreductase CH56_1482 PF00890 FAD binding domain CH56_1483 PF02754 Cysteine-rich domain CH56_1483 PF13183 4Fe-4S dicluster domain CH56_1484 PF08786 DcrB CH56_1485 PF02592 Putative vitamin uptake transporter CH56_1486 PF01206 Sulfurtransferase TusA CH56_1487 PF00403 Heavy-metal-associated domain CH56_1488 PF07947 YhhN family CH56_149 PF03591 AzlC protein CH56_1491 PF06611 Protein of unknown function (DUF1145) CH56_1493 PF00448 SRP54-type protein, GTPase domain CH56_1493 PF02881 SRP54-type protein, helical bundle domain CH56_1493 PF00448 SRP54-type protein, GTPase domain CH56_1493 PF02881 SRP54-type protein, helical bundle domain CH56_1494 PF00005 ABC transporter CH56_1495 PF18075 FtsX extracellular domain CH56_1495 PF02687 FtsX-like permease family CH56_1496 PF04542 Sigma-70 region 2 CH56_1496 PF00140 Sigma-70 factor, region 1.2 CH56_1496 PF04545 Sigma-70, region 4 CH56_1497 PF01797 Transposase IS200 like CH56_1498 PF04324 BFD-like [2Fe-2S] binding domain CH56_1499 PF00210 Ferritin-like domain CH56_15 PF11973 NQRA C-terminal domain CH56_15 PF05896 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) CH56_150 PF05437 Branched-chain amino acid transport protein (AzlD) CH56_1500 PF00338 Ribosomal protein S10p/S20e CH56_1501 PF00297 Ribosomal protein L3 CH56_1502 PF00573 Ribosomal protein L4/L1 family CH56_1503 PF00276 Ribosomal protein L23 CH56_1504 PF00181 Ribosomal Proteins L2, RNA binding domain CH56_1504 PF03947 Ribosomal Proteins L2, C-terminal domain CH56_1505 PF00203 Ribosomal protein S19 CH56_1506 PF00237 Ribosomal protein L22p/L17e CH56_1507 PF00189 Ribosomal protein S3, C-terminal domain CH56_1507 PF07650 KH domain CH56_1508 PF00252 Ribosomal protein L16p/L10e CH56_1509 PF00831 Ribosomal L29 protein CH56_151 PF01047 MarR family CH56_1510 PF00366 Ribosomal protein S17 CH56_1511 PF00238 Ribosomal protein L14p/L23e CH56_1512 PF00467 KOW motif CH56_1512 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 CH56_1513 PF00281 Ribosomal protein L5 CH56_1513 PF00673 ribosomal L5P family C-terminus CH56_1514 PF00253 Ribosomal protein S14p/S29e CH56_1515 PF00410 Ribosomal protein S8 CH56_1516 PF00347 Ribosomal protein L6 CH56_1517 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast CH56_1518 PF03719 Ribosomal protein S5, C-terminal domain CH56_1518 PF00333 Ribosomal protein S5, N-terminal domain CH56_1519 PF00327 Ribosomal protein L30p/L7e CH56_152 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CH56_152 PF00529 HlyD membrane-fusion protein of T1SS CH56_1520 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A CH56_1521 PF00344 SecY translocase CH56_1522 PF00444 Ribosomal protein L36 CH56_1523 PF00416 Ribosomal protein S13/S18 CH56_1524 PF00411 Ribosomal protein S11 CH56_1525 PF00163 Ribosomal protein S4/S9 N-terminal domain CH56_1525 PF01479 S4 domain CH56_1526 PF01000 RNA polymerase Rpb3/RpoA insert domain CH56_1526 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain CH56_1526 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain CH56_1527 PF01196 Ribosomal protein L17 CH56_1528 PF13411 MerR HTH family regulatory protein CH56_1529 PF03889 Alternative ribosome-rescue factor A CH56_153 PF07690 Major Facilitator Superfamily CH56_1530 PF00872 Transposase, Mutator family CH56_1531 PF01741 Large-conductance mechanosensitive channel, MscL CH56_1532 PF02080 TrkA-C domain CH56_1532 PF02254 TrkA-N domain CH56_1533 PF01189 16S rRNA methyltransferase RsmB/F CH56_1533 PF01029 NusB family CH56_1534 PF00551 Formyl transferase CH56_1534 PF02911 Formyl transferase, C-terminal domain CH56_1535 PF01327 Polypeptide deformylase CH56_1536 PF17782 DprA winged helix domain CH56_1536 PF02481 DNA recombination-mediator protein A CH56_1538 PF17782 DprA winged helix domain CH56_1538 PF02481 DNA recombination-mediator protein A CH56_1539 PF04361 Protein of unknown function (DUF494) CH56_154 PF08032 RNA 2'-O ribose methyltransferase substrate binding CH56_154 PF00588 SpoU rRNA Methylase family CH56_1540 PF01396 Topoisomerase DNA binding C4 zinc finger CH56_1541 PF01300 Telomere recombination CH56_1542 PF18317 Shikimate 5'-dehydrogenase C-terminal domain CH56_1542 PF01488 Shikimate / quinate 5-dehydrogenase CH56_1542 PF08501 Shikimate dehydrogenase substrate binding domain CH56_1543 PF00132 Bacterial transferase hexapeptide (six repeats) CH56_155 PF00085 Thioredoxin CH56_1553 PF00665 Integrase core domain CH56_1553 PF02796 Helix-turn-helix domain of resolvase CH56_1554 PF02796 Helix-turn-helix domain of resolvase CH56_1554 PF00665 Integrase core domain CH56_1556 PF01695 IstB-like ATP binding protein CH56_1558 PF04204 Homoserine O-succinyltransferase CH56_1559 PF01274 Malate synthase CH56_1560 PF00463 Isocitrate lyase family CH56_1561 PF04143 Sulphur transport CH56_1562 PF01206 Sulfurtransferase TusA CH56_1563 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH56_1563 PF03466 LysR substrate binding domain CH56_1564 PF03222 Tryptophan/tyrosine permease family CH56_1565 PF01053 Cys/Met metabolism PLP-dependent enzyme CH56_1566 PF00005 ABC transporter CH56_1567 PF01032 FecCD transport family CH56_1568 PF01497 Periplasmic binding protein CH56_1569 PF05171 Haemin-degrading HemS.ChuX domain CH56_157 PF00583 Acetyltransferase (GNAT) family CH56_157 PF13380 CoA binding domain CH56_157 PF13607 Succinyl-CoA ligase like flavodoxin domain CH56_1570 PF00593 TonB dependent receptor CH56_1570 PF07715 TonB-dependent Receptor Plug Domain CH56_1571 PF10636 Hemin uptake protein hemP CH56_1572 PF13460 NAD(P)H-binding CH56_1573 PF06228 Haem utilisation ChuX/HutX CH56_1574 PF04055 Radical SAM superfamily CH56_1578 PF15608 PELOTA RNA binding domain CH56_1578 PF11202 Phosphoribosyl transferase (PRTase) CH56_158 PF13091 PLD-like domain CH56_1582 PF02342 TerD domain CH56_1583 PF02342 TerD domain CH56_1584 PF05099 Tellurite resistance protein TerB CH56_1585 PF03741 Integral membrane protein TerC family CH56_1586 PF02342 TerD domain CH56_1587 PF02342 TerD domain CH56_159 PF10043 Predicted periplasmic lipoprotein (DUF2279) CH56_1591 PF13953 PapC C-terminal domain CH56_1591 PF13954 PapC N-terminal domain CH56_1591 PF00577 Outer membrane usher protein CH56_1592 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain CH56_1595 PF08031 Berberine and berberine like CH56_1595 PF01565 FAD binding domain CH56_1596 PF12951 Passenger-associated-transport-repeat CH56_1598 PF04345 Chorismate lyase CH56_1599 PF01040 UbiA prenyltransferase family CH56_16 PF13230 Glutamine amidotransferases class-II CH56_1600 PF01797 Transposase IS200 like CH56_1601 PF01281 Ribosomal protein L9, N-terminal domain CH56_1601 PF03948 Ribosomal protein L9, C-terminal domain CH56_1602 PF01084 Ribosomal protein S18 CH56_1603 PF01250 Ribosomal protein S6 CH56_1605 PF00326 Prolyl oligopeptidase family CH56_1606 PF07338 Protein of unknown function (DUF1471) CH56_1607 PF18158 Adaptive response protein AidB N-terminal domain CH56_1607 PF02770 Acyl-CoA dehydrogenase, middle domain CH56_1607 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CH56_1608 PF01695 IstB-like ATP binding protein CH56_1610 PF00665 Integrase core domain CH56_1610 PF02796 Helix-turn-helix domain of resolvase CH56_1611 PF08032 RNA 2'-O ribose methyltransferase substrate binding CH56_1611 PF00588 SpoU rRNA Methylase family CH56_1612 PF08461 Ribonuclease R winged-helix domain CH56_1612 PF08206 Ribonuclease B OB domain CH56_1612 PF00773 RNB domain CH56_1612 PF00575 S1 RNA binding domain CH56_1612 PF17876 Cold shock domain CH56_1613 PF02082 Transcriptional regulator CH56_1614 PF00709 Adenylosuccinate synthetase CH56_1615 PF09838 Uncharacterized protein conserved in bacteria (DUF2065) CH56_1616 PF01145 SPFH domain / Band 7 family CH56_1617 PF12221 Bacterial membrane protein N terminal CH56_1617 PF01145 SPFH domain / Band 7 family CH56_1618 PF01926 50S ribosome-binding GTPase CH56_1618 PF13167 GTP-binding GTPase N-terminal CH56_1618 PF16360 GTP-binding GTPase Middle Region CH56_1619 PF17209 Hfq protein CH56_1621 PF08676 MutL C terminal dimerisation domain CH56_1621 PF01119 DNA mismatch repair protein, C-terminal domain CH56_1622 PF01520 N-acetylmuramoyl-L-alanine amidase CH56_1623 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE CH56_1624 PF01256 Carbohydrate kinase CH56_1624 PF03853 YjeF-related protein N-terminus CH56_1625 PF08331 Domain of unknown function (DUF1730) CH56_1629 PF00929 Exonuclease CH56_1630 PF03193 RsgA GTPase CH56_1631 PF02666 Phosphatidylserine decarboxylase CH56_1632 PF00924 Mechanosensitive ion channel CH56_1632 PF12794 Mechanosensitive ion channel inner membrane domain 1 CH56_1632 PF12795 Mechanosensitive ion channel porin domain CH56_1633 PF00152 tRNA synthetases class II (D, K and N) CH56_1634 PF02910 Fumarate reductase flavoprotein C-term CH56_1634 PF00890 FAD binding domain CH56_1635 PF13085 2Fe-2S iron-sulfur cluster binding domain CH56_1635 PF13183 4Fe-4S dicluster domain CH56_1636 PF02300 Fumarate reductase subunit C CH56_1637 PF02313 Fumarate reductase subunit D CH56_1638 PF00893 Small Multidrug Resistance protein CH56_1639 PF09285 Elongation factor P, C-terminal CH56_1639 PF08207 Elongation factor P (EF-P) KOW-like domain CH56_1639 PF01132 Elongation factor P (EF-P) OB domain CH56_164 PF02861 Clp amino terminal domain, pathogenicity island component CH56_164 PF17871 AAA lid domain CH56_164 PF10431 C-terminal, D2-small domain, of ClpB protein CH56_164 PF07724 AAA domain (Cdc48 subfamily) CH56_164 PF00004 ATPase family associated with various cellular activities (AAA) CH56_1640 PF04055 Radical SAM superfamily CH56_1641 PF13698 Domain of unknown function (DUF4156) CH56_1642 PF00118 TCP-1/cpn60 chaperonin family CH56_1643 PF00166 Chaperonin 10 Kd subunit CH56_1644 PF04186 FxsA cytoplasmic membrane protein CH56_1645 PF00206 Lyase CH56_1645 PF10415 Fumarase C C-terminus CH56_1646 PF03605 Anaerobic c4-dicarboxylate membrane transporter CH56_1647 PF03091 CutA1 divalent ion tolerance protein CH56_1648 PF11412 Disulphide bond corrector protein DsbC CH56_1648 PF02683 Cytochrome C biogenesis protein transmembrane region CH56_1649 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CH56_1649 PF01568 Molydopterin dinucleotide binding domain CH56_1649 PF00384 Molybdopterin oxidoreductase CH56_1650 PF12800 4Fe-4S binding domain CH56_1650 PF13247 4Fe-4S dicluster domain CH56_1651 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster CH56_1651 PF13247 4Fe-4S dicluster domain CH56_1651 PF07992 Pyridine nucleotide-disulphide oxidoreductase CH56_166 PF01479 S4 domain CH56_166 PF00849 RNA pseudouridylate synthase CH56_1661 PF06379 L-rhamnose-proton symport protein (RhaT) CH56_1662 PF12833 Helix-turn-helix domain CH56_1662 PF02311 AraC-like ligand binding domain CH56_1663 PF12833 Helix-turn-helix domain CH56_1663 PF02311 AraC-like ligand binding domain CH56_1666 PF02782 FGGY family of carbohydrate kinases, C-terminal domain CH56_1666 PF00370 FGGY family of carbohydrate kinases, N-terminal domain CH56_1667 PF06134 L-rhamnose isomerase (RhaA) CH56_1668 PF00596 Class II Aldolase and Adducin N-terminal domain CH56_1669 PF00465 Iron-containing alcohol dehydrogenase CH56_167 PF13525 Outer membrane lipoprotein CH56_1670 PF05336 L-rhamnose mutarotase CH56_1671 PF00436 Single-strand binding protein family CH56_1672 PF17760 UvrA interaction domain CH56_1672 PF00005 ABC transporter CH56_1672 PF17755 UvrA DNA-binding domain CH56_1673 PF04237 YjbR CH56_1674 PF00155 Aminotransferase class I and II CH56_1675 PF01168 Alanine racemase, N-terminal domain CH56_1675 PF00842 Alanine racemase, C-terminal domain CH56_1676 PF00772 DnaB-like helicase N terminal domain CH56_1676 PF03796 DnaB-like helicase C terminal domain CH56_1678 PF08240 Alcohol dehydrogenase GroES-like domain CH56_1678 PF00107 Zinc-binding dehydrogenase CH56_1679 PF00004 ATPase family associated with various cellular activities (AAA) CH56_1679 PF07724 AAA domain (Cdc48 subfamily) CH56_1679 PF10431 C-terminal, D2-small domain, of ClpB protein CH56_1679 PF17871 AAA lid domain CH56_168 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein CH56_1680 PF00004 ATPase family associated with various cellular activities (AAA) CH56_1680 PF07724 AAA domain (Cdc48 subfamily) CH56_1680 PF17871 AAA lid domain CH56_1680 PF10431 C-terminal, D2-small domain, of ClpB protein CH56_1689 PF00849 RNA pseudouridylate synthase CH56_1690 PF00226 DnaJ domain CH56_1690 PF05099 Tellurite resistance protein TerB CH56_1691 PF03968 OstA-like protein CH56_1691 PF04453 LPS transport system D CH56_1692 PF09312 SurA N-terminal domain CH56_1692 PF00639 PPIC-type PPIASE domain CH56_1693 PF04166 Pyridoxal phosphate biosynthetic protein PdxA CH56_1694 PF00398 Ribosomal RNA adenine dimethylase CH56_1695 PF04379 ApaG domain CH56_1696 PF00149 Calcineurin-like phosphoesterase CH56_1698 PF00186 Dihydrofolate reductase CH56_1699 PF12821 Threonine/Serine exporter, ThrE CH56_17 PF03734 L,D-transpeptidase catalytic domain CH56_170 PF00800 Prephenate dehydratase CH56_170 PF01817 Chorismate mutase type II CH56_1700 PF06738 Putative threonine/serine exporter CH56_1701 PF01810 LysE type translocator CH56_1702 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain CH56_1702 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain CH56_1702 PF02142 MGS-like domain CH56_1703 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain CH56_1703 PF00117 Glutamine amidotransferase class-I CH56_1704 PF01113 Dihydrodipicolinate reductase, N-terminus CH56_1704 PF05173 Dihydrodipicolinate reductase, C-terminus CH56_1705 PF01797 Transposase IS200 like CH56_1706 PF02401 LytB protein CH56_1707 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CH56_1708 PF01252 Signal peptidase (SPase) II CH56_1709 PF08264 Anticodon-binding domain of tRNA CH56_1709 PF00133 tRNA synthetases class I (I, L, M and V) CH56_1709 PF06827 Zinc finger found in FPG and IleRS CH56_171 PF01817 Chorismate mutase type II CH56_171 PF02153 Prephenate dehydrogenase CH56_1710 PF06574 FAD synthetase CH56_1710 PF01687 Riboflavin kinase CH56_1711 PF01649 Ribosomal protein S20 CH56_1712 PF01797 Transposase IS200 like CH56_1713 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH56_1713 PF03466 LysR substrate binding domain CH56_1714 PF06965 Na+/H+ antiporter 1 CH56_1715 PF00226 DnaJ domain CH56_1715 PF01556 DnaJ C terminal domain CH56_1715 PF00684 DnaJ central domain CH56_1716 PF00012 Hsp70 protein CH56_1717 PF01184 GPR1/FUN34/yaaH family CH56_1719 PF07690 Major Facilitator Superfamily CH56_172 PF00793 DAHP synthetase I family CH56_1720 PF00994 Probable molybdopterin binding domain CH56_1721 PF00923 Transaldolase/Fructose-6-phosphate aldolase CH56_1722 PF03883 Peroxide stress protein YaaA CH56_1724 PF14821 Threonine synthase N terminus CH56_1724 PF00291 Pyridoxal-phosphate dependent enzyme CH56_1725 PF00288 GHMP kinases N terminal domain CH56_1725 PF08544 GHMP kinases C terminal CH56_1726 PF00742 Homoserine dehydrogenase CH56_1726 PF13840 ACT domain CH56_1726 PF01842 ACT domain CH56_1726 PF00696 Amino acid kinase family CH56_1726 PF03447 Homoserine dehydrogenase, NAD binding domain CH56_1729 PF00486 Transcriptional regulatory protein, C terminal CH56_1729 PF00072 Response regulator receiver domain CH56_173 PF00072 Response regulator receiver domain CH56_173 PF04397 LytTr DNA-binding domain CH56_1730 PF05981 CreA protein CH56_1732 PF00300 Histidine phosphatase superfamily (branch 1) CH56_1733 PF12833 Helix-turn-helix domain CH56_1733 PF06445 GyrI-like small molecule binding domain CH56_1734 PF01371 Trp repressor protein CH56_1735 PF01931 Protein of unknown function DUF84 CH56_1736 PF01464 Transglycosylase SLT domain CH56_1736 PF14718 Soluble lytic murein transglycosylase L domain CH56_1737 PF00690 Cation transporter/ATPase, N-terminus CH56_1737 PF00689 Cation transporting ATPase, C-terminus CH56_1739 PF00990 Diguanylate cyclase, GGDEF domain CH56_1739 PF17152 Periplasmic sensor domain CH56_174 PF01695 IstB-like ATP binding protein CH56_1740 PF00691 OmpA family CH56_1741 PF12848 ABC transporter CH56_1741 PF00005 ABC transporter CH56_1743 PF01381 Helix-turn-helix CH56_1743 PF13521 AAA domain CH56_1744 PF18073 Rubredoxin metal binding domain CH56_1745 PF18429 Domain of unknown function (DUF5609) CH56_1746 PF10144 Bacterial virulence factor haemolysin CH56_1747 PF01048 Phosphorylase superfamily CH56_1748 PF01676 Metalloenzyme superfamily CH56_1749 PF02885 Glycosyl transferase family, helical bundle domain CH56_1749 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain CH56_1749 PF00591 Glycosyl transferase family, a/b domain CH56_175 PF00665 Integrase core domain CH56_175 PF02796 Helix-turn-helix domain of resolvase CH56_1750 PF01791 DeoC/LacD family aldolase CH56_1751 PF01773 Na+ dependent nucleoside transporter N-terminus CH56_1751 PF07670 Nucleoside recognition CH56_1751 PF07662 Na+ dependent nucleoside transporter C-terminus CH56_1752 PF01026 TatD related DNase CH56_1753 PF01734 Patatin-like phospholipase CH56_1754 PF07043 Protein of unknown function (DUF1328) CH56_1755 PF04972 BON domain CH56_1756 PF16658 Class II release factor RF3, C-terminal domain CH56_1756 PF00009 Elongation factor Tu GTP binding domain CH56_1756 PF03144 Elongation factor Tu domain 2 CH56_1757 PF00583 Acetyltransferase (GNAT) family CH56_1758 PF03603 DNA polymerase III psi subunit CH56_1759 PF05175 Methyltransferase small domain CH56_1759 PF08468 Methyltransferase small domain N-terminal CH56_176 PF04055 Radical SAM superfamily CH56_176 PF06968 Biotin and Thiamin Synthesis associated domain CH56_1761 PF07256 Protein of unknown function (DUF1435) CH56_1762 PF00990 Diguanylate cyclase, GGDEF domain CH56_1763 PF01095 Pectinesterase CH56_1766 PF00873 AcrB/AcrD/AcrF family CH56_1767 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CH56_177 PF01797 Transposase IS200 like CH56_1770 PF01075 Glycosyltransferase family 9 (heptosyltransferase) CH56_1771 PF02782 FGGY family of carbohydrate kinases, C-terminal domain CH56_1771 PF00370 FGGY family of carbohydrate kinases, N-terminal domain CH56_1772 PF04198 Putative sugar-binding domain CH56_1772 PF00325 Bacterial regulatory proteins, crp family CH56_1773 PF00005 ABC transporter CH56_1774 PF02653 Branched-chain amino acid transport system / permease component CH56_1775 PF02653 Branched-chain amino acid transport system / permease component CH56_1776 PF13407 Periplasmic binding protein domain CH56_1777 PF01791 DeoC/LacD family aldolase CH56_1778 PF03992 Antibiotic biosynthesis monooxygenase CH56_1779 PF10696 Protein of unknown function (DUF2501) CH56_178 PF00367 phosphotransferase system, EIIB CH56_178 PF02378 Phosphotransferase system, EIIC CH56_1780 PF05524 PEP-utilising enzyme, N-terminal CH56_1780 PF00391 PEP-utilising enzyme, mobile domain CH56_1780 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 CH56_1780 PF02896 PEP-utilising enzyme, TIM barrel domain CH56_1780 PF00381 PTS HPr component phosphorylation site CH56_1782 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit CH56_1783 PF12833 Helix-turn-helix domain CH56_1784 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit CH56_1786 PF05987 Bacterial protein of unknown function (DUF898) CH56_179 PF01026 TatD related DNase CH56_1792 PF00872 Transposase, Mutator family CH56_1793 PF01245 Ribosomal protein L19 CH56_1794 PF01746 tRNA (Guanine-1)-methyltransferase CH56_1795 PF01782 RimM N-terminal domain CH56_1795 PF05239 PRC-barrel domain CH56_1796 PF00886 Ribosomal protein S16 CH56_1797 PF00448 SRP54-type protein, GTPase domain CH56_1797 PF02978 Signal peptide binding domain CH56_1797 PF02881 SRP54-type protein, helical bundle domain CH56_1798 PF01578 Cytochrome C assembly protein CH56_1799 PF00571 CBS domain CH56_1799 PF03471 Transporter associated domain CH56_1799 PF01595 Cyclin M transmembrane N-terminal domain CH56_18 PF13580 SIS domain CH56_180 PF09115 DNA polymerase III, delta subunit, C terminal CH56_1800 PF01695 IstB-like ATP binding protein CH56_1801 PF00665 Integrase core domain CH56_1801 PF02796 Helix-turn-helix domain of resolvase CH56_1803 PF03471 Transporter associated domain CH56_1803 PF00571 CBS domain CH56_1803 PF01595 Cyclin M transmembrane N-terminal domain CH56_1804 PF02664 S-Ribosylhomocysteinase (LuxS) CH56_1805 PF04262 Glutamate-cysteine ligase CH56_1806 PF09335 SNARE associated Golgi protein CH56_1807 PF13419 Haloacid dehalogenase-like hydrolase CH56_181 PF02223 Thymidylate kinase CH56_1812 PF02599 Global regulator protein family CH56_1813 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain CH56_1813 PF01411 tRNA synthetases class II (A) CH56_1813 PF02272 DHHA1 domain CH56_1814 PF00872 Transposase, Mutator family CH56_1815 PF02631 RecX family CH56_1816 PF00872 Transposase, Mutator family CH56_1817 PF02631 RecX family CH56_1818 PF00154 recA bacterial DNA recombination protein CH56_1819 PF02464 Competence-damaged protein CH56_182 PF02618 YceG-like family CH56_1820 PF07690 Major Facilitator Superfamily CH56_1823 PF00370 FGGY family of carbohydrate kinases, N-terminal domain CH56_1823 PF02782 FGGY family of carbohydrate kinases, C-terminal domain CH56_1824 PF00665 Integrase core domain CH56_1824 PF13333 Integrase core domain CH56_1824 PF13276 HTH-like domain CH56_1826 PF02780 Transketolase, C-terminal domain CH56_1826 PF02779 Transketolase, pyrimidine binding domain CH56_1827 PF00456 Transketolase, thiamine diphosphate binding domain CH56_1828 PF02653 Branched-chain amino acid transport system / permease component CH56_1829 PF00005 ABC transporter CH56_183 PF01063 Amino-transferase class IV CH56_1832 PF00141 Peroxidase CH56_1833 PF07361 Cytochrome b562 CH56_1834 PF01292 Prokaryotic cytochrome b561 CH56_1835 PF02613 Nitrate reductase delta subunit CH56_1836 PF04976 DMSO reductase anchor subunit (DmsC) CH56_1837 PF12800 4Fe-4S binding domain CH56_1837 PF13247 4Fe-4S dicluster domain CH56_1838 PF01568 Molydopterin dinucleotide binding domain CH56_1838 PF00384 Molybdopterin oxidoreductase CH56_1838 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CH56_1839 PF00596 Class II Aldolase and Adducin N-terminal domain CH56_1840 PF08220 DeoR-like helix-turn-helix domain CH56_1840 PF00455 DeoR C terminal sensor domain CH56_1841 PF08220 DeoR-like helix-turn-helix domain CH56_1841 PF00455 DeoR C terminal sensor domain CH56_1843 PF00005 ABC transporter CH56_1844 PF02653 Branched-chain amino acid transport system / permease component CH56_1845 PF02653 Branched-chain amino acid transport system / permease component CH56_1846 PF01261 Xylose isomerase-like TIM barrel CH56_1847 PF00370 FGGY family of carbohydrate kinases, N-terminal domain CH56_1847 PF02782 FGGY family of carbohydrate kinases, C-terminal domain CH56_1848 PF05683 Fumarase C-terminus CH56_1848 PF05681 Fumarate hydratase (Fumerase) CH56_185 PF02801 Beta-ketoacyl synthase, C-terminal domain CH56_185 PF00109 Beta-ketoacyl synthase, N-terminal domain CH56_1850 PF00557 Metallopeptidase family M24 CH56_1852 PF07715 TonB-dependent Receptor Plug Domain CH56_1852 PF00593 TonB dependent receptor CH56_1854 PF03150 Di-haem cytochrome c peroxidase CH56_1854 PF00034 Cytochrome c CH56_1854 PF14376 Haem-binding domain CH56_1855 PF00497 Bacterial extracellular solute-binding proteins, family 3 CH56_1858 PF01022 Bacterial regulatory protein, arsR family CH56_1859 PF02040 Arsenical pump membrane protein CH56_186 PF00550 Phosphopantetheine attachment site CH56_1860 PF13936 Helix-turn-helix domain CH56_1860 PF04198 Putative sugar-binding domain CH56_1861 PF02734 DAK2 domain CH56_1862 PF02733 Dak1 domain CH56_1864 PF08240 Alcohol dehydrogenase GroES-like domain CH56_1864 PF00107 Zinc-binding dehydrogenase CH56_1865 PF02502 Ribose/Galactose Isomerase CH56_1866 PF05188 MutS domain II CH56_1866 PF05190 MutS family domain IV CH56_1866 PF01624 MutS domain I CH56_1866 PF00488 MutS domain V CH56_1866 PF05192 MutS domain III CH56_1867 PF00140 Sigma-70 factor, region 1.2 CH56_1867 PF04542 Sigma-70 region 2 CH56_1867 PF04539 Sigma-70 region 3 CH56_1867 PF04545 Sigma-70, region 4 CH56_1868 PF01476 LysM domain CH56_1868 PF01551 Peptidase family M23 CH56_1870 PF01975 Survival protein SurE CH56_1871 PF01142 tRNA pseudouridine synthase D (TruD) CH56_1872 PF02542 YgbB family CH56_1873 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase CH56_1874 PF04977 Septum formation initiator CH56_1875 PF12084 Protein of unknown function (DUF3561) CH56_1877 PF00009 Elongation factor Tu GTP binding domain CH56_1878 PF01507 Phosphoadenosine phosphosulfate reductase family CH56_1879 PF14824 Sirohaem biosynthesis protein central CH56_1879 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CH56_1879 PF10414 Sirohaem synthase dimerisation region CH56_188 PF00698 Acyl transferase domain CH56_1883 PF01507 Phosphoadenosine phosphosulfate reductase family CH56_1884 PF01507 Phosphoadenosine phosphosulfate reductase family CH56_1885 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain CH56_1885 PF01077 Nitrite and sulphite reductase 4Fe-4S domain CH56_1886 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain CH56_1886 PF01077 Nitrite and sulphite reductase 4Fe-4S domain CH56_1887 PF00258 Flavodoxin CH56_1887 PF00175 Oxidoreductase NAD-binding domain CH56_1887 PF00667 FAD binding domain CH56_1888 PF01242 6-pyruvoyl tetrahydropterin synthase CH56_1889 PF04055 Radical SAM superfamily CH56_189 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III CH56_189 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal CH56_1890 PF00080 Copper/zinc superoxide dismutase (SODC) CH56_1891 PF03952 Enolase, N-terminal domain CH56_1891 PF00113 Enolase, C-terminal TIM barrel domain CH56_1892 PF06418 CTP synthase N-terminus CH56_1892 PF00117 Glutamine amidotransferase class-I CH56_1893 PF03819 MazG nucleotide pyrophosphohydrolase domain CH56_1894 PF02824 TGS domain CH56_1894 PF04607 Region found in RelA / SpoT proteins CH56_1894 PF13291 ACT domain CH56_1895 PF00672 HAMP domain CH56_1895 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) CH56_1895 PF00072 Response regulator receiver domain CH56_1895 PF01627 Hpt domain CH56_1895 PF00512 His Kinase A (phospho-acceptor) domain CH56_1895 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH56_1896 PF00595 PDZ domain CH56_1897 PF13286 Phosphohydrolase-associated domain CH56_1897 PF01966 HD domain CH56_1898 PF01048 Phosphorylase superfamily CH56_1899 PF01497 Periplasmic binding protein CH56_19 PF09317 Domain of unknown function (DUF1974) CH56_19 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CH56_19 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CH56_190 PF02504 Fatty acid synthesis protein CH56_1900 PF03458 UPF0126 domain CH56_1901 PF01521 Iron-sulphur cluster biosynthesis CH56_1902 PF00654 Voltage gated chloride channel CH56_1903 PF00202 Aminotransferase class-III CH56_1904 PF01032 FecCD transport family CH56_1905 PF01497 Periplasmic binding protein CH56_1906 PF00005 ABC transporter CH56_1907 PF14814 Bifunctional transglycosylase second domain CH56_1907 PF00905 Penicillin binding protein transpeptidase domain CH56_1907 PF00912 Transglycosylase CH56_1907 PF14812 Transmembrane domain of transglycosylase PBP1 at N-terminal CH56_1908 PF00270 DEAD/DEAH box helicase CH56_1908 PF08482 ATP-dependent helicase C-terminal CH56_1908 PF00271 Helicase conserved C-terminal domain CH56_1908 PF04408 Helicase associated domain (HA2) CH56_1909 PF02834 LigT like Phosphoesterase CH56_191 PF01783 Ribosomal L32p protein family CH56_1910 PF17746 SfsA N-terminal OB domain CH56_1910 PF03749 Sugar fermentation stimulation protein RE domain CH56_1911 PF01258 Prokaryotic dksA/traR C4-type zinc finger CH56_1912 PF00749 tRNA synthetases class I (E and Q), catalytic domain CH56_1913 PF12627 Probable RNA and SrmB- binding site of polymerase A CH56_1913 PF12626 Polymerase A arginine-rich C-terminus CH56_1913 PF01743 Poly A polymerase head domain CH56_1914 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) CH56_1915 PF02548 Ketopantoate hydroxymethyltransferase CH56_1916 PF02569 Pantoate-beta-alanine ligase CH56_1917 PF02261 Aspartate decarboxylase CH56_1918 PF01522 Polysaccharide deacetylase CH56_1919 PF01061 ABC-2 type transporter CH56_192 PF02620 Large ribosomal RNA subunit accumulation protein YceD CH56_1920 PF00005 ABC transporter CH56_1921 PF00484 Carbonic anhydrase CH56_1922 PF00156 Phosphoribosyl transferase domain CH56_1924 PF07732 Multicopper oxidase CH56_1924 PF07731 Multicopper oxidase CH56_1924 PF10518 TAT (twin-arginine translocation) pathway signal sequence CH56_1924 PF00394 Multicopper oxidase CH56_1925 PF09691 Type II secretion system pilotin lipoprotein (PulS_OutS) CH56_1926 PF17284 Spermidine synthase tetramerisation domain CH56_1927 PF02675 S-adenosylmethionine decarboxylase CH56_1928 PF00892 EamA-like transporter family CH56_1929 PF06062 Uncharacterised protein family (UPF0231) CH56_193 PF02545 Maf-like protein CH56_1930 PF06434 Aconitate hydratase 2 N-terminus CH56_1930 PF11791 Aconitate B N-terminal domain CH56_1930 PF00330 Aconitase family (aconitate hydratase) CH56_1932 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CH56_1932 PF07992 Pyridine nucleotide-disulphide oxidoreductase CH56_1933 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) CH56_1933 PF00364 Biotin-requiring enzyme CH56_1933 PF02817 e3 binding domain CH56_1934 PF17831 Pyruvate dehydrogenase E1 component middle domain CH56_1934 PF00456 Transketolase, thiamine diphosphate binding domain CH56_1935 PF00392 Bacterial regulatory proteins, gntR family CH56_1935 PF07729 FCD domain CH56_1936 PF00324 Amino acid permease CH56_1937 PF17113 Regulatory signalling modulator protein AmpE CH56_1938 PF01510 N-acetylmuramoyl-L-alanine amidase CH56_1939 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain CH56_1939 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain CH56_194 PF01479 S4 domain CH56_194 PF00849 RNA pseudouridylate synthase CH56_1940 PF07963 Prokaryotic N-terminal methylation motif CH56_1941 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain CH56_1941 PF00437 Type II/IV secretion system protein CH56_1942 PF00482 Type II secretion system (T2SS), protein F CH56_1943 PF00478 IMP dehydrogenase / GMP reductase domain CH56_1944 PF01121 Dephospho-CoA kinase CH56_1945 PF07072 Cell division protein CH56_1946 PF03884 DNA gyrase inhibitor YacG CH56_1948 PF02796 Helix-turn-helix domain of resolvase CH56_1948 PF00665 Integrase core domain CH56_1949 PF01695 IstB-like ATP binding protein CH56_195 PF12111 Polyribonucleotide phosphorylase C terminal CH56_195 PF00575 S1 RNA binding domain CH56_195 PF10150 Ribonuclease E/G family CH56_1953 PF01042 Endoribonuclease L-PSP CH56_196 PF00872 Transposase, Mutator family CH56_1960 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CH56_1960 PF00529 HlyD membrane-fusion protein of T1SS CH56_1962 PF04632 Fusaric acid resistance protein family CH56_1964 PF01915 Glycosyl hydrolase family 3 C-terminal domain CH56_1964 PF00933 Glycosyl hydrolase family 3 N terminal domain CH56_1964 PF14310 Fibronectin type III-like domain CH56_1965 PF01915 Glycosyl hydrolase family 3 C-terminal domain CH56_1965 PF14310 Fibronectin type III-like domain CH56_1965 PF00933 Glycosyl hydrolase family 3 N terminal domain CH56_1967 PF00528 Binding-protein-dependent transport system inner membrane component CH56_1968 PF00528 Binding-protein-dependent transport system inner membrane component CH56_1969 PF13416 Bacterial extracellular solute-binding protein CH56_197 PF07690 Major Facilitator Superfamily CH56_1970 PF00356 Bacterial regulatory proteins, lacI family CH56_1971 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain CH56_1972 PF17912 MalK OB fold domain CH56_1972 PF00005 ABC transporter CH56_1972 PF03459 TOBE domain CH56_1976 PF13018 Extended Signal Peptide of Type V secretion system CH56_1976 PF04829 Pre-toxin domain with VENN motif CH56_1976 PF05860 haemagglutination activity domain CH56_1976 PF13332 Hemagglutinin repeat CH56_1977 PF04829 Pre-toxin domain with VENN motif CH56_1977 PF13018 Extended Signal Peptide of Type V secretion system CH56_1977 PF13332 Hemagglutinin repeat CH56_1977 PF05860 haemagglutination activity domain CH56_1979 PF05860 haemagglutination activity domain CH56_1979 PF04829 Pre-toxin domain with VENN motif CH56_1979 PF13332 Hemagglutinin repeat CH56_1979 PF13018 Extended Signal Peptide of Type V secretion system CH56_198 PF01042 Endoribonuclease L-PSP CH56_1981 PF04829 Pre-toxin domain with VENN motif CH56_1981 PF05860 haemagglutination activity domain CH56_1981 PF13018 Extended Signal Peptide of Type V secretion system CH56_1981 PF13332 Hemagglutinin repeat CH56_1982 PF13018 Extended Signal Peptide of Type V secretion system CH56_1982 PF13332 Hemagglutinin repeat CH56_1982 PF04829 Pre-toxin domain with VENN motif CH56_1982 PF05860 haemagglutination activity domain CH56_1983 PF13332 Hemagglutinin repeat CH56_1983 PF13018 Extended Signal Peptide of Type V secretion system CH56_1983 PF04829 Pre-toxin domain with VENN motif CH56_1983 PF05860 haemagglutination activity domain CH56_1984 PF08479 POTRA domain, ShlB-type CH56_1984 PF17287 POTRA domain CH56_1984 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB CH56_1985 PF00092 von Willebrand factor type A domain CH56_1986 PF02342 TerD domain CH56_1988 PF00092 von Willebrand factor type A domain CH56_1991 PF03729 Short repeat of unknown function (DUF308) CH56_1992 PF07992 Pyridine nucleotide-disulphide oxidoreductase CH56_1992 PF00724 NADH:flavin oxidoreductase / NADH oxidase family CH56_1993 PF05175 Methyltransferase small domain CH56_1995 PF03797 Autotransporter beta-domain CH56_1996 PF01863 Protein of unknown function DUF45 CH56_1997 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CH56_1998 PF00375 Sodium:dicarboxylate symporter family CH56_200 PF08348 YheO-like PAS domain CH56_200 PF13309 HTH domain CH56_2000 PF01797 Transposase IS200 like CH56_2001 PF10688 Bacterial inner membrane protein CH56_2002 PF08666 SAF domain CH56_2002 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus CH56_2003 PF01232 Mannitol dehydrogenase Rossmann domain CH56_2003 PF08125 Mannitol dehydrogenase C-terminal domain CH56_2004 PF01232 Mannitol dehydrogenase Rossmann domain CH56_2004 PF08125 Mannitol dehydrogenase C-terminal domain CH56_2005 PF02614 Glucuronate isomerase CH56_2006 PF07690 Major Facilitator Superfamily CH56_2007 PF00392 Bacterial regulatory proteins, gntR family CH56_2007 PF07729 FCD domain CH56_2009 PF09335 SNARE associated Golgi protein CH56_201 PF12951 Passenger-associated-transport-repeat CH56_2010 PF13721 SecD export protein N-terminal TM region CH56_2012 PF05957 Bacterial protein of unknown function (DUF883) CH56_2013 PF07332 Putative Actinobacterial Holin-X, holin superfamily III CH56_2015 PF07681 DoxX CH56_2016 PF13409 Glutathione S-transferase, N-terminal domain CH56_2017 PF03466 LysR substrate binding domain CH56_2017 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH56_2018 PF17954 Quercetinase C-terminal cupin domain CH56_2018 PF02678 Pirin CH56_2019 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CH56_2020 PF04348 LppC putative lipoprotein CH56_2021 PF02021 Uncharacterised protein family UPF0102 CH56_2022 PF13580 SIS domain CH56_2023 PF04972 BON domain CH56_2024 PF00912 Transglycosylase CH56_2026 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH56_2026 PF00512 His Kinase A (phospho-acceptor) domain CH56_2026 PF18415 Histidine kinase receptor ArcB trans-membrane domain CH56_2026 PF01627 Hpt domain CH56_2026 PF00072 Response regulator receiver domain CH56_2026 PF00989 PAS fold CH56_2027 PF16199 Radical_SAM C-terminal domain CH56_2027 PF04055 Radical SAM superfamily CH56_2028 PF01493 GXGXG motif CH56_2028 PF01645 Conserved region in glutamate synthase CH56_2028 PF04898 Glutamate synthase central domain CH56_2028 PF00310 Glutamine amidotransferases class-II CH56_2029 PF07992 Pyridine nucleotide-disulphide oxidoreductase CH56_2029 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster CH56_2031 PF04386 Stringent starvation protein B CH56_2032 PF02798 Glutathione S-transferase, N-terminal domain CH56_2032 PF00043 Glutathione S-transferase, C-terminal domain CH56_2033 PF00380 Ribosomal protein S9/S16 CH56_2034 PF00572 Ribosomal protein L13 CH56_2035 PF03969 AFG1-like ATPase CH56_2036 PF06295 Protein of unknown function (DUF1043) CH56_2037 PF13180 PDZ domain CH56_2037 PF00595 PDZ domain CH56_2038 PF01797 Transposase IS200 like CH56_2039 PF13180 PDZ domain CH56_2040 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) CH56_2041 PF01722 BolA-like protein CH56_2042 PF13466 STAS domain CH56_2043 PF05494 MlaC protein CH56_2044 PF02470 MlaD protein CH56_2045 PF02405 Permease MlaE CH56_2046 PF00005 ABC transporter CH56_2047 PF01699 Sodium/calcium exchanger protein CH56_2048 PF01380 SIS domain CH56_2048 PF00571 CBS domain CH56_205 PF02203 Tar ligand binding domain homologue CH56_205 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CH56_205 PF00672 HAMP domain CH56_2050 PF06835 Lipopolysaccharide-assembly, LptC-related CH56_2051 PF03968 OstA-like protein CH56_2052 PF00005 ABC transporter CH56_2052 PF12399 Branched-chain amino acid ATP-binding cassette transporter CH56_2053 PF04963 Sigma-54 factor, core binding domain CH56_2053 PF00309 Sigma-54 factor, Activator interacting domain (AID) CH56_2053 PF04552 Sigma-54, DNA binding domain CH56_2054 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein CH56_2055 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 CH56_2056 PF03668 P-loop ATPase protein family CH56_2057 PF00381 PTS HPr component phosphorylation site CH56_2058 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain CH56_2058 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain CH56_2059 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain CH56_2059 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain CH56_206 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CH56_206 PF02203 Tar ligand binding domain homologue CH56_206 PF00672 HAMP domain CH56_2060 PF01042 Endoribonuclease L-PSP CH56_2062 PF00356 Bacterial regulatory proteins, lacI family CH56_2063 PF02378 Phosphotransferase system, EIIC CH56_2063 PF00367 phosphotransferase system, EIIB CH56_2064 PF11941 Domain of unknown function (DUF3459) CH56_2064 PF00128 Alpha amylase, catalytic domain CH56_2065 PF01272 Transcription elongation factor, GreA/GreB, C-term CH56_2065 PF14760 Rnk N-terminus CH56_2066 PF07361 Cytochrome b562 CH56_2068 PF01523 Putative modulator of DNA gyrase CH56_2069 PF04751 Protein of unknown function (DUF615) CH56_207 PF01739 CheR methyltransferase, SAM binding domain CH56_207 PF03705 CheR methyltransferase, all-alpha domain CH56_2070 PF01337 Barstar (barnase inhibitor) CH56_2072 PF00171 Aldehyde dehydrogenase family CH56_2073 PF00171 Aldehyde dehydrogenase family CH56_2074 PF04632 Fusaric acid resistance protein family CH56_2075 PF13533 Biotin-lipoyl like CH56_2076 PF07869 Protein of unknown function (DUF1656) CH56_2077 PF03466 LysR substrate binding domain CH56_2077 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH56_2078 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH56_2078 PF03466 LysR substrate binding domain CH56_208 PF00072 Response regulator receiver domain CH56_208 PF01339 CheB methylesterase CH56_2080 PF18413 Neuraminidase-like domain CH56_2080 PF18276 Tc toxin complex TcA C-terminal TcB-binding domain CH56_2081 PF12256 Insecticide toxin TcdB middle/N-terminal region CH56_2081 PF03534 Salmonella virulence plasmid 65kDa B protein CH56_2081 PF12255 Insecticide toxin TcdB middle/C-terminal region CH56_2082 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain CH56_2082 PF01367 5'-3' exonuclease, C-terminal SAM fold CH56_2083 PF00665 Integrase core domain CH56_2083 PF02796 Helix-turn-helix domain of resolvase CH56_2087 PF18807 Tripartite Tc toxins repeat CH56_2087 PF05785 Rho-activating domain of cytotoxic necrotizing factor CH56_2089 PF14431 YwqJ-like deaminase CH56_2089 PF18807 Tripartite Tc toxins repeat CH56_209 PF00072 Response regulator receiver domain CH56_2090 PF01523 Putative modulator of DNA gyrase CH56_2091 PF00795 Carbon-nitrogen hydrolase CH56_2092 PF13502 AsmA-like C-terminal region CH56_2092 PF13116 Protein of unknown function CH56_2093 PF10150 Ribonuclease E/G family CH56_2093 PF00575 S1 RNA binding domain CH56_2094 PF02545 Maf-like protein CH56_2095 PF04093 rod shape-determining protein MreD CH56_2096 PF04085 rod shape-determining protein MreC CH56_2098 PF00990 Diguanylate cyclase, GGDEF domain CH56_2098 PF00563 EAL domain CH56_2098 PF17157 Gammaproteobacterial periplasmic sensor domain CH56_2099 PF00107 Zinc-binding dehydrogenase CH56_2099 PF08240 Alcohol dehydrogenase GroES-like domain CH56_21 PF18254 HMW1 domain 2 CH56_21 PF18071 HMW1C N-terminal CH56_210 PF04344 Chemotaxis phosphatase, CheZ CH56_2100 PF00174 Oxidoreductase molybdopterin binding domain CH56_2101 PF01794 Ferric reductase like transmembrane component CH56_2102 PF01220 Dehydroquinase class II CH56_2103 PF00364 Biotin-requiring enzyme CH56_2104 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain CH56_2104 PF00289 Biotin carboxylase, N-terminal domain CH56_2104 PF02785 Biotin carboxylase C-terminal domain CH56_2106 PF06196 Protein of unknown function (DUF997) CH56_2107 PF00474 Sodium:solute symporter family CH56_2109 PF01207 Dihydrouridine synthase (Dus) CH56_211 PF01510 N-acetylmuramoyl-L-alanine amidase CH56_2110 PF02954 Bacterial regulatory protein, Fis family CH56_2113 PF07690 Major Facilitator Superfamily CH56_2114 PF02627 Carboxymuconolactone decarboxylase family CH56_2115 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase CH56_2115 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase CH56_2116 PF00753 Metallo-beta-lactamase superfamily CH56_2117 PF05433 Glycine zipper 2TM domain CH56_2118 PF00313 'Cold-shock' DNA-binding domain CH56_2119 PF00313 'Cold-shock' DNA-binding domain CH56_212 PF05662 Coiled stalk of trimeric autotransporter adhesin CH56_212 PF03895 YadA-like membrane anchor domain CH56_212 PF13018 Extended Signal Peptide of Type V secretion system CH56_212 PF05658 Head domain of trimeric autotransporter adhesin CH56_2123 PF02798 Glutathione S-transferase, N-terminal domain CH56_2124 PF00571 CBS domain CH56_2124 PF01380 SIS domain CH56_2125 PF02782 FGGY family of carbohydrate kinases, C-terminal domain CH56_2125 PF00370 FGGY family of carbohydrate kinases, N-terminal domain CH56_2127 PF02653 Branched-chain amino acid transport system / permease component CH56_2128 PF00005 ABC transporter CH56_2130 PF03279 Bacterial lipid A biosynthesis acyltransferase CH56_2132 PF00999 Sodium/hydrogen exchanger family CH56_2133 PF00860 Permease family CH56_2134 PF04221 RelB antitoxin CH56_2135 PF00005 ABC transporter CH56_2136 PF00665 Integrase core domain CH56_2136 PF02796 Helix-turn-helix domain of resolvase CH56_2137 PF07728 AAA domain (dynein-related subfamily) CH56_2137 PF12102 Domain of unknown function (DUF3578) CH56_2139 PF01527 Transposase CH56_2140 PF01555 DNA methylase CH56_2142 PF00872 Transposase, Mutator family CH56_215 PF00842 Alanine racemase, C-terminal domain CH56_215 PF01168 Alanine racemase, N-terminal domain CH56_2151 PF00534 Glycosyl transferases group 1 CH56_2151 PF13439 Glycosyltransferase Family 4 CH56_2152 PF16363 GDP-mannose 4,6 dehydratase CH56_2153 PF16363 GDP-mannose 4,6 dehydratase CH56_2154 PF01370 NAD dependent epimerase/dehydratase family CH56_2155 PF01050 Mannose-6-phosphate isomerase CH56_2155 PF00483 Nucleotidyl transferase CH56_2156 PF00535 Glycosyl transferase family 2 CH56_2157 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II CH56_2157 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain CH56_2157 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I CH56_2157 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III CH56_2158 PF02706 Chain length determinant protein CH56_2159 PF00294 pfkB family carbohydrate kinase CH56_2160 PF00999 Sodium/hydrogen exchanger family CH56_2160 PF02254 TrkA-N domain CH56_2161 PF07690 Major Facilitator Superfamily CH56_2162 PF02872 5'-nucleotidase, C-terminal domain CH56_2162 PF00149 Calcineurin-like phosphoesterase CH56_2163 PF00149 Calcineurin-like phosphoesterase CH56_2163 PF02872 5'-nucleotidase, C-terminal domain CH56_2164 PF00149 Calcineurin-like phosphoesterase CH56_2164 PF02872 5'-nucleotidase, C-terminal domain CH56_2167 PF04073 Aminoacyl-tRNA editing domain CH56_2168 PF01963 TraB family CH56_2169 PF00403 Heavy-metal-associated domain CH56_2170 PF13411 MerR HTH family regulatory protein CH56_2171 PF01957 NfeD-like C-terminal, partner-binding CH56_2172 PF16200 C-terminal region of band_7 CH56_2172 PF01145 SPFH domain / Band 7 family CH56_2173 PF00085 Thioredoxin CH56_2174 PF00106 short chain dehydrogenase CH56_2175 PF13472 GDSL-like Lipase/Acylhydrolase family CH56_2176 PF00005 ABC transporter CH56_2178 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain CH56_2178 PF02222 ATP-grasp domain CH56_2179 PF00731 AIR carboxylase CH56_2180 PF00149 Calcineurin-like phosphoesterase CH56_2181 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD CH56_2182 PF09190 DALR domain CH56_2182 PF01406 tRNA synthetases class I (C) catalytic domain CH56_2185 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain CH56_2185 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain CH56_2191 PF01066 CDP-alcohol phosphatidyltransferase CH56_2193 PF01553 Acyltransferase CH56_2194 PF12147 Putative methyltransferase CH56_2194 PF12146 Serine aminopeptidase, S33 CH56_2195 PF00782 Dual specificity phosphatase, catalytic domain CH56_2198 PF01695 IstB-like ATP binding protein CH56_2199 PF01695 IstB-like ATP binding protein CH56_2200 PF02796 Helix-turn-helix domain of resolvase CH56_2200 PF00665 Integrase core domain CH56_2203 PF01797 Transposase IS200 like CH56_2204 PF01553 Acyltransferase CH56_2205 PF01219 Prokaryotic diacylglycerol kinase CH56_2206 PF01726 LexA DNA binding domain CH56_2206 PF00717 Peptidase S24-like CH56_2207 PF01475 Ferric uptake regulator family CH56_2208 PF01207 Dihydrouridine synthase (Dus) CH56_2209 PF09583 Phage shock protein G (Phageshock_PspG) CH56_221 PF01695 IstB-like ATP binding protein CH56_2210 PF08240 Alcohol dehydrogenase GroES-like domain CH56_2210 PF00107 Zinc-binding dehydrogenase CH56_2211 PF01695 IstB-like ATP binding protein CH56_2212 PF02796 Helix-turn-helix domain of resolvase CH56_2212 PF00665 Integrase core domain CH56_2213 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH56_2213 PF16359 RcsD-ABL domain CH56_2213 PF01627 Hpt domain CH56_2214 PF00072 Response regulator receiver domain CH56_2214 PF00196 Bacterial regulatory proteins, luxR family CH56_2215 PF09456 RcsC Alpha-Beta-Loop (ABL) CH56_2215 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH56_2215 PF00072 Response regulator receiver domain CH56_2215 PF00512 His Kinase A (phospho-acceptor) domain CH56_2216 PF00521 DNA gyrase/topoisomerase IV, subunit A CH56_2216 PF03989 DNA gyrase C-terminal domain, beta-propeller CH56_2218 PF02867 Ribonucleotide reductase, barrel domain CH56_2218 PF03477 ATP cone domain CH56_2218 PF00317 Ribonucleotide reductase, all-alpha domain CH56_2219 PF00268 Ribonucleotide reductase, small chain CH56_222 PF02796 Helix-turn-helix domain of resolvase CH56_222 PF00665 Integrase core domain CH56_2220 PF00111 2Fe-2S iron-sulfur cluster binding domain CH56_2221 PF03974 Ecotin CH56_2222 PF00994 Probable molybdopterin binding domain CH56_2223 PF03222 Tryptophan/tyrosine permease family CH56_2224 PF07437 YfaZ precursor CH56_2225 PF06628 Catalase-related immune-responsive CH56_2225 PF00199 Catalase CH56_2226 PF13307 Helicase C-terminal domain CH56_2226 PF06733 DEAD_2 CH56_2227 PF00267 Gram-negative porin CH56_2228 PF00892 EamA-like transporter family CH56_2230 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain CH56_2230 PF01276 Orn/Lys/Arg decarboxylase, major domain CH56_2230 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain CH56_2231 PF13520 Amino acid permease CH56_2232 PF00528 Binding-protein-dependent transport system inner membrane component CH56_2233 PF00528 Binding-protein-dependent transport system inner membrane component CH56_2234 PF00005 ABC transporter CH56_2235 PF00528 Binding-protein-dependent transport system inner membrane component CH56_2236 PF04069 Substrate binding domain of ABC-type glycine betaine transport system CH56_2237 PF04069 Substrate binding domain of ABC-type glycine betaine transport system CH56_2238 PF00581 Rhodanese-like domain CH56_224 PF04069 Substrate binding domain of ABC-type glycine betaine transport system CH56_2241 PF00005 ABC transporter CH56_2242 PF00005 ABC transporter CH56_2243 PF02653 Branched-chain amino acid transport system / permease component CH56_2244 PF02653 Branched-chain amino acid transport system / permease component CH56_2245 PF02954 Bacterial regulatory protein, Fis family CH56_2245 PF13188 PAS domain CH56_2245 PF00158 Sigma-54 interaction domain CH56_2246 PF07308 Protein of unknown function (DUF1456) CH56_2247 PF00528 Binding-protein-dependent transport system inner membrane component CH56_2248 PF00528 Binding-protein-dependent transport system inner membrane component CH56_225 PF00528 Binding-protein-dependent transport system inner membrane component CH56_2250 PF00005 ABC transporter CH56_2251 PF04226 Transglycosylase associated protein CH56_2253 PF01844 HNH endonuclease CH56_2254 PF01928 CYTH domain CH56_2255 PF09330 D-lactate dehydrogenase, membrane binding CH56_2255 PF01565 FAD binding domain CH56_2256 PF00768 D-alanyl-D-alanine carboxypeptidase CH56_2258 PF01207 Dihydrouridine synthase (Dus) CH56_226 PF00571 CBS domain CH56_226 PF00005 ABC transporter CH56_2262 PF05973 Phage derived protein Gp49-like (DUF891) CH56_227 PF00268 Ribonucleotide reductase, small chain CH56_2272 PF13356 Arm DNA-binding domain CH56_2272 PF00589 Phage integrase family CH56_2274 PF01668 SmpB protein CH56_2275 PF03364 Polyketide cyclase / dehydrase and lipid transport CH56_2276 PF03658 RnfH family Ubiquitin CH56_2277 PF04355 SmpA / OmlA family CH56_2278 PF02463 RecF/RecN/SMC N terminal domain CH56_2279 PF01513 ATP-NAD kinase CH56_228 PF02867 Ribonucleotide reductase, barrel domain CH56_228 PF00317 Ribonucleotide reductase, all-alpha domain CH56_228 PF08343 Ribonucleotide reductase N-terminal CH56_2280 PF01025 GrpE CH56_2281 PF00285 Citrate synthase, C-terminal domain CH56_2282 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit CH56_2283 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit CH56_2284 PF00890 FAD binding domain CH56_2284 PF02910 Fumarate reductase flavoprotein C-term CH56_2285 PF13085 2Fe-2S iron-sulfur cluster binding domain CH56_2286 PF16078 2-oxoglutarate dehydrogenase N-terminus CH56_2286 PF02779 Transketolase, pyrimidine binding domain CH56_2286 PF16870 2-oxoglutarate dehydrogenase C-terminal CH56_2286 PF00676 Dehydrogenase E1 component CH56_2287 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) CH56_2287 PF00364 Biotin-requiring enzyme CH56_2287 PF02817 e3 binding domain CH56_2288 PF08442 ATP-grasp domain CH56_2288 PF00549 CoA-ligase CH56_2289 PF00549 CoA-ligase CH56_2289 PF02629 CoA binding domain CH56_229 PF07972 NrdI Flavodoxin like CH56_2290 PF01654 Cytochrome bd terminal oxidase subunit I CH56_2291 PF02322 Cytochrome bd terminal oxidase subunit II CH56_2292 PF08173 Membrane bound YbgT-like protein CH56_2293 PF09600 Cyd operon protein YbgE (Cyd_oper_YbgE) CH56_2295 PF01618 MotA/TolQ/ExbB proton channel family CH56_2296 PF02472 Biopolymer transport protein ExbD/TolR CH56_2297 PF06519 TolA C-terminal CH56_2297 PF06519 TolA C-terminal CH56_2298 PF07676 WD40-like Beta Propeller Repeat CH56_2298 PF04052 TolB amino-terminal domain CH56_2299 PF00691 OmpA family CH56_23 PF05860 haemagglutination activity domain CH56_2300 PF16331 TolA binding protein trimerisation CH56_2300 PF13174 Tetratricopeptide repeat CH56_2303 PF02445 Quinolinate synthetase A protein CH56_2304 PF04973 Nicotinamide mononucleotide transporter CH56_2305 PF01545 Cation efflux family CH56_2307 PF00793 DAHP synthetase I family CH56_2308 PF00300 Histidine phosphatase superfamily (branch 1) CH56_231 PF06392 Acid shock protein repeat CH56_2310 PF01263 Aldose 1-epimerase CH56_2312 PF08544 GHMP kinases C terminal CH56_2312 PF00288 GHMP kinases N terminal domain CH56_2312 PF10509 Galactokinase galactose-binding signature CH56_2313 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain CH56_2313 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain CH56_2314 PF16363 GDP-mannose 4,6 dehydratase CH56_2317 PF00005 ABC transporter CH56_2318 PF03459 TOBE domain CH56_2318 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH56_2319 PF10766 Multidrug efflux pump-associated protein AcrZ CH56_232 PF09400 Protein of unknown function (DUF2002) CH56_2321 PF00528 Binding-protein-dependent transport system inner membrane component CH56_2322 PF03459 TOBE domain CH56_2322 PF00005 ABC transporter CH56_2324 PF10282 Lactonase, 7-bladed beta-propeller CH56_2325 PF10282 Lactonase, 7-bladed beta-propeller CH56_2326 PF00202 Aminotransferase class-III CH56_2327 PF06968 Biotin and Thiamin Synthesis associated domain CH56_2327 PF04055 Radical SAM superfamily CH56_2328 PF00155 Aminotransferase class I and II CH56_2329 PF08241 Methyltransferase domain CH56_233 PF06711 Protein of unknown function (DUF1198) CH56_2332 PF17757 UvrB interaction domain CH56_2332 PF12344 Ultra-violet resistance protein B CH56_2332 PF00271 Helicase conserved C-terminal domain CH56_2332 PF04851 Type III restriction enzyme, res subunit CH56_2332 PF02151 UvrB/uvrC motif CH56_2333 PF09905 DNA-binding protein VF530 CH56_2334 PF01933 Uncharacterised protein family UPF0052 CH56_2336 PF04055 Radical SAM superfamily CH56_2336 PF06463 Molybdenum Cofactor Synthesis C CH56_2337 PF01967 MoaC family CH56_2338 PF02597 ThiS family CH56_2339 PF02391 MoaE protein CH56_2340 PF01027 Inhibitor of apoptosis-promoting Bax1 CH56_2343 PF02796 Helix-turn-helix domain of resolvase CH56_2343 PF00665 Integrase core domain CH56_2344 PF01627 Hpt domain CH56_2344 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH56_2344 PF16359 RcsD-ABL domain CH56_2345 PF07690 Major Facilitator Superfamily CH56_2347 PF00267 Gram-negative porin CH56_235 PF00313 'Cold-shock' DNA-binding domain CH56_2350 PF00144 Beta-lactamase CH56_2352 PF12706 Beta-lactamase superfamily domain CH56_2353 PF02743 Cache domain CH56_2353 PF00672 HAMP domain CH56_2353 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CH56_2354 PF01278 Omptin family CH56_2356 PF06183 DinI-like family CH56_2357 PF01381 Helix-turn-helix CH56_2357 PF00717 Peptidase S24-like CH56_2358 PF06530 Phage antitermination protein Q CH56_2359 PF07005 Sugar-binding N-terminal domain CH56_2359 PF17042 Nucleotide-binding C-terminal domain CH56_236 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CH56_2360 PF00596 Class II Aldolase and Adducin N-terminal domain CH56_2361 PF08220 DeoR-like helix-turn-helix domain CH56_2361 PF00455 DeoR C terminal sensor domain CH56_2362 PF01261 Xylose isomerase-like TIM barrel CH56_2366 PF04984 Phage tail sheath protein subtilisin-like domain CH56_2366 PF17482 Phage tail sheath C-terminal domain CH56_237 PF00528 Binding-protein-dependent transport system inner membrane component CH56_2374 PF04865 Baseplate J-like protein CH56_2377 PF07484 Phage Tail Collar Domain CH56_2378 PF01418 Helix-turn-helix domain, rpiR family CH56_2378 PF01380 SIS domain CH56_238 PF00528 Binding-protein-dependent transport system inner membrane component CH56_238 PF12911 N-terminal TM domain of oligopeptide transport permease C CH56_2380 PF00232 Glycosyl hydrolase family 1 CH56_2384 PF05638 Type VI secretion system effector, Hcp CH56_2387 PF11893 Domain of unknown function (DUF3413) CH56_2387 PF00884 Sulfatase CH56_2388 PF07208 Protein of unknown function (DUF1414) CH56_2389 PF04245 37-kD nucleoid-associated bacterial protein CH56_239 PF00005 ABC transporter CH56_2391 PF01386 Ribosomal L25p family CH56_2392 PF00271 Helicase conserved C-terminal domain CH56_2392 PF04851 Type III restriction enzyme, res subunit CH56_2393 PF01479 S4 domain CH56_2393 PF00849 RNA pseudouridylate synthase CH56_2394 PF07690 Major Facilitator Superfamily CH56_2395 PF13989 YejG-like protein CH56_2396 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CH56_2396 PF00005 ABC transporter CH56_2397 PF12911 N-terminal TM domain of oligopeptide transport permease C CH56_2397 PF00528 Binding-protein-dependent transport system inner membrane component CH56_2398 PF00528 Binding-protein-dependent transport system inner membrane component CH56_2399 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CH56_24 PF08479 POTRA domain, ShlB-type CH56_24 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB CH56_240 PF00005 ABC transporter CH56_2400 PF12792 CSS motif domain associated with EAL CH56_2400 PF00563 EAL domain CH56_2402 PF00877 NlpC/P60 family CH56_2403 PF01569 PAP2 superfamily CH56_2404 PF02492 CobW/HypB/UreG, nucleotide-binding domain CH56_2404 PF07683 Cobalamin synthesis protein cobW C-terminal domain CH56_2406 PF00392 Bacterial regulatory proteins, gntR family CH56_2406 PF07729 FCD domain CH56_2407 PF01232 Mannitol dehydrogenase Rossmann domain CH56_2407 PF08125 Mannitol dehydrogenase C-terminal domain CH56_2408 PF03786 D-mannonate dehydratase (UxuA) CH56_2409 PF01132 Elongation factor P (EF-P) OB domain CH56_2409 PF08207 Elongation factor P (EF-P) KOW-like domain CH56_2409 PF09285 Elongation factor P, C-terminal CH56_2410 PF03222 Tryptophan/tyrosine permease family CH56_2411 PF03692 Putative zinc- or iron-chelating domain CH56_2413 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CH56_2413 PF01842 ACT domain CH56_2413 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CH56_2415 PF00171 Aldehyde dehydrogenase family CH56_2416 PF00370 FGGY family of carbohydrate kinases, N-terminal domain CH56_2416 PF02782 FGGY family of carbohydrate kinases, C-terminal domain CH56_2417 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) CH56_2419 PF00005 ABC transporter CH56_242 PF00547 Urease, gamma subunit CH56_2420 PF02653 Branched-chain amino acid transport system / permease component CH56_2421 PF00293 NUDIX domain CH56_2422 PF00381 PTS HPr component phosphorylation site CH56_2422 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 CH56_2423 PF00294 pfkB family carbohydrate kinase CH56_2424 PF02378 Phosphotransferase system, EIIC CH56_2424 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit CH56_2425 PF00486 Transcriptional regulatory protein, C terminal CH56_2426 PF17550 Family of unknown function CH56_2428 PF02753 Pili assembly chaperone PapD, C-terminal domain CH56_2428 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain CH56_2429 PF13954 PapC N-terminal domain CH56_2429 PF00577 Outer membrane usher protein CH56_2429 PF13953 PapC C-terminal domain CH56_243 PF00699 Urease beta subunit CH56_2430 PF01261 Xylose isomerase-like TIM barrel CH56_2431 PF03601 Conserved hypothetical protein 698 CH56_2432 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH56_2432 PF03466 LysR substrate binding domain CH56_2434 PF00324 Amino acid permease CH56_2436 PF01032 FecCD transport family CH56_2437 PF00005 ABC transporter CH56_2438 PF07715 TonB-dependent Receptor Plug Domain CH56_2438 PF00593 TonB dependent receptor CH56_2439 PF00043 Glutathione S-transferase, C-terminal domain CH56_2439 PF13417 Glutathione S-transferase, N-terminal domain CH56_244 PF00449 Urease alpha-subunit, N-terminal domain CH56_244 PF01979 Amidohydrolase family CH56_2443 PF03180 NLPA lipoprotein CH56_2444 PF00005 ABC transporter CH56_2444 PF09383 NIL domain CH56_2445 PF00528 Binding-protein-dependent transport system inner membrane component CH56_2446 PF07943 Penicillin-binding protein 5, C-terminal domain CH56_2446 PF00768 D-alanyl-D-alanine carboxypeptidase CH56_2449 PF00455 DeoR C terminal sensor domain CH56_2449 PF08220 DeoR-like helix-turn-helix domain CH56_245 PF05194 UreE urease accessory protein, C-terminal domain CH56_245 PF02814 UreE urease accessory protein, N-terminal domain CH56_2450 PF01791 DeoC/LacD family aldolase CH56_2451 PF01569 PAP2 superfamily CH56_2453 PF06826 Predicted Permease Membrane Region CH56_2453 PF02080 TrkA-C domain CH56_2454 PF00462 Glutaredoxin CH56_2455 PF07214 Protein of unknown function (DUF1418) CH56_2456 PF10722 Putative bacterial sensory transduction regulator CH56_2457 PF13416 Bacterial extracellular solute-binding protein CH56_2458 PF08402 TOBE domain CH56_2458 PF00005 ABC transporter CH56_2459 PF00528 Binding-protein-dependent transport system inner membrane component CH56_246 PF01730 UreF CH56_2460 PF00528 Binding-protein-dependent transport system inner membrane component CH56_2461 PF10767 Protein of unknown function (DUF2593) CH56_2462 PF05958 tRNA (Uracil-5-)-methyltransferase CH56_2463 PF00497 Bacterial extracellular solute-binding proteins, family 3 CH56_2468 PF01032 FecCD transport family CH56_2469 PF00005 ABC transporter CH56_247 PF02492 CobW/HypB/UreG, nucleotide-binding domain CH56_2470 PF03059 Nicotianamine synthase protein CH56_2471 PF10100 Staphylopine dehydrogenase CH56_2472 PF00892 EamA-like transporter family CH56_2473 PF00528 Binding-protein-dependent transport system inner membrane component CH56_2474 PF00528 Binding-protein-dependent transport system inner membrane component CH56_2475 PF00497 Bacterial extracellular solute-binding proteins, family 3 CH56_2476 PF00005 ABC transporter CH56_2477 PF01817 Chorismate mutase type II CH56_2478 PF12883 Protein of unknown function (DUF3828) CH56_2479 PF01370 NAD dependent epimerase/dehydratase family CH56_248 PF01774 UreD urease accessory protein CH56_2480 PF11066 Protein of unknown function (DUF2867) CH56_2480 PF13460 NAD(P)H-binding CH56_2481 PF01212 Beta-eliminating lyase CH56_2482 PF00205 Thiamine pyrophosphate enzyme, central domain CH56_2482 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CH56_2482 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CH56_2483 PF00970 Oxidoreductase FAD-binding domain CH56_2483 PF00111 2Fe-2S iron-sulfur cluster binding domain CH56_2483 PF00175 Oxidoreductase NAD-binding domain CH56_2484 PF03063 Prismane/CO dehydrogenase family CH56_2485 PF03956 Lysine exporter LysO CH56_2486 PF11398 Protein of unknown function (DUF2813) CH56_2487 PF04393 Protein of unknown function (DUF535) CH56_2488 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CH56_2489 PF12704 MacB-like periplasmic core domain CH56_2489 PF00005 ABC transporter CH56_2489 PF02687 FtsX-like permease family CH56_249 PF03253 Urea transporter CH56_2490 PF02687 FtsX-like permease family CH56_2490 PF00005 ABC transporter CH56_2490 PF12704 MacB-like periplasmic core domain CH56_2491 PF00313 'Cold-shock' DNA-binding domain CH56_2492 PF02617 ATP-dependent Clp protease adaptor protein ClpS CH56_2493 PF10431 C-terminal, D2-small domain, of ClpB protein CH56_2493 PF02861 Clp amino terminal domain, pathogenicity island component CH56_2493 PF17871 AAA lid domain CH56_2493 PF07724 AAA domain (Cdc48 subfamily) CH56_2493 PF00004 ATPase family associated with various cellular activities (AAA) CH56_2494 PF02861 Clp amino terminal domain, pathogenicity island component CH56_2494 PF07724 AAA domain (Cdc48 subfamily) CH56_2494 PF10431 C-terminal, D2-small domain, of ClpB protein CH56_2494 PF17871 AAA lid domain CH56_2494 PF00004 ATPase family associated with various cellular activities (AAA) CH56_2496 PF01176 Translation initiation factor 1A / IF-1 CH56_2497 PF03588 Leucyl/phenylalanyl-tRNA protein transferase CH56_2498 PF00005 ABC transporter CH56_2498 PF00664 ABC transporter transmembrane region CH56_2499 PF00005 ABC transporter CH56_2499 PF00664 ABC transporter transmembrane region CH56_25 PF01636 Phosphotransferase enzyme family CH56_250 PF03824 High-affinity nickel-transport protein CH56_2501 PF07992 Pyridine nucleotide-disulphide oxidoreductase CH56_2502 PF01037 Lrp/AsnC ligand binding domain CH56_2503 PF13491 4TM region of DNA translocase FtsK/SpoIIIE CH56_2503 PF17854 FtsK alpha domain CH56_2503 PF09397 Ftsk gamma domain CH56_2503 PF01580 FtsK/SpoIIIE family CH56_2504 PF03548 Outer membrane lipoprotein carrier protein LolA CH56_2506 PF00004 ATPase family associated with various cellular activities (AAA) CH56_2506 PF16193 AAA C-terminal domain CH56_2506 PF12002 MgsA AAA+ ATPase C terminal CH56_2507 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CH56_2507 PF02403 Seryl-tRNA synthetase N-terminal domain CH56_2508 PF07690 Major Facilitator Superfamily CH56_2509 PF07690 Major Facilitator Superfamily CH56_251 PF06411 HdeA/HdeB family CH56_2510 PF04055 Radical SAM superfamily CH56_2513 PF10709 Protein of unknown function (DUF2511) CH56_2515 PF04234 CopC domain CH56_2516 PF00210 Ferritin-like domain CH56_2517 PF06440 DNA polymerase III, theta subunit CH56_2518 PF00561 alpha/beta hydrolase fold CH56_252 PF02254 TrkA-N domain CH56_252 PF07885 Ion channel CH56_2520 PF01695 IstB-like ATP binding protein CH56_2521 PF02796 Helix-turn-helix domain of resolvase CH56_2521 PF00665 Integrase core domain CH56_2522 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain CH56_2522 PF00326 Prolyl oligopeptidase family CH56_2523 PF13995 YebF-like protein CH56_2525 PF07130 YebG protein CH56_2526 PF00271 Helicase conserved C-terminal domain CH56_2526 PF03880 DbpA RNA binding domain CH56_2526 PF00270 DEAD/DEAH box helicase CH56_2527 PF02222 ATP-grasp domain CH56_2528 PF03701 Uncharacterised protein family (UPF0181) CH56_2529 PF00425 chorismate binding enzyme CH56_2529 PF04715 Anthranilate synthase component I, N terminal region CH56_253 PF02537 CrcB-like protein, Camphor Resistance (CrcB) CH56_2530 PF00293 NUDIX domain CH56_2531 PF03313 Serine dehydratase alpha chain CH56_2531 PF03315 Serine dehydratase beta chain CH56_2532 PF01613 Flavin reductase like domain CH56_2533 PF11794 4-hydroxyphenylacetate 3-hydroxylase N terminal CH56_2533 PF03241 4-hydroxyphenylacetate 3-hydroxylase C terminal CH56_2534 PF07690 Major Facilitator Superfamily CH56_2535 PF03328 HpcH/HpaI aldolase/citrate lyase family CH56_2536 PF01557 Fumarylacetoacetate (FAA) hydrolase family CH56_2537 PF02962 5-carboxymethyl-2-hydroxymuconate isomerase CH56_2538 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase CH56_2539 PF00171 Aldehyde dehydrogenase family CH56_254 PF02537 CrcB-like protein, Camphor Resistance (CrcB) CH56_2540 PF01557 Fumarylacetoacetate (FAA) hydrolase family CH56_2541 PF01557 Fumarylacetoacetate (FAA) hydrolase family CH56_2542 PF01047 MarR family CH56_2543 PF03471 Transporter associated domain CH56_2543 PF03741 Integral membrane protein TerC family CH56_2544 PF03610 PTS system fructose IIA component CH56_2544 PF03830 PTS system sorbose subfamily IIB component CH56_2545 PF03609 PTS system sorbose-specific iic component CH56_2546 PF03613 PTS system mannose/fructose/sorbose family IID component CH56_2547 PF03613 PTS system mannose/fructose/sorbose family IID component CH56_2548 PF06173 Protein of unknown function (DUF986) CH56_2549 PF02659 Putative manganese efflux pump CH56_255 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit CH56_2550 PF07715 TonB-dependent Receptor Plug Domain CH56_2550 PF00593 TonB dependent receptor CH56_2551 PF08447 PAS fold CH56_2551 PF08448 PAS fold CH56_2551 PF05231 MASE1 CH56_2551 PF00990 Diguanylate cyclase, GGDEF domain CH56_2551 PF13426 PAS domain CH56_2551 PF00563 EAL domain CH56_2553 PF13847 Methyltransferase domain CH56_2555 PF00313 'Cold-shock' DNA-binding domain CH56_2557 PF07017 Antimicrobial peptide resistance and lipid A acylation protein PagP CH56_2558 PF00324 Amino acid permease CH56_256 PF02378 Phosphotransferase system, EIIC CH56_2561 PF13974 YebO-like protein CH56_2562 PF13996 YobH-like protein CH56_2563 PF10964 Protein of unknown function (DUF2766) CH56_2565 PF12833 Helix-turn-helix domain CH56_2567 PF00005 ABC transporter CH56_2567 PF00664 ABC transporter transmembrane region CH56_257 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit CH56_2570 PF06167 Glucose-regulated metallo-peptidase M90 CH56_2572 PF00356 Bacterial regulatory proteins, lacI family CH56_2572 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family CH56_2573 PF01306 LacY proton/sugar symporter CH56_2574 PF16874 Glycosyl hydrolase family 36 C-terminal domain CH56_2574 PF16875 Glycosyl hydrolase family 36 N-terminal domain CH56_2577 PF17837 4'-phosphopantetheinyl transferase N-terminal domain CH56_2577 PF01648 4'-phosphopantetheinyl transferase superfamily CH56_2578 PF03480 Bacterial extracellular solute-binding protein, family 7 CH56_258 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit CH56_2580 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component CH56_2581 PF00072 Response regulator receiver domain CH56_2581 PF00196 Bacterial regulatory proteins, luxR family CH56_2583 PF09831 Uncharacterized protein conserved in bacteria (DUF2058) CH56_2585 PF01522 Polysaccharide deacetylase CH56_2587 PF01554 MatE CH56_2588 PF00764 Arginosuccinate synthase CH56_2589 PF01070 FMN-dependent dehydrogenase CH56_259 PF07883 Cupin domain CH56_259 PF12833 Helix-turn-helix domain CH56_2591 PF13378 Enolase C-terminal domain-like CH56_2591 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain CH56_2592 PF01557 Fumarylacetoacetate (FAA) hydrolase family CH56_2594 PF04134 Protein of unknown function, DUF393 CH56_2595 PF07690 Major Facilitator Superfamily CH56_2596 PF00872 Transposase, Mutator family CH56_2597 PF02369 Bacterial Ig-like domain (group 1) CH56_2597 PF11924 Inverse autotransporter, beta-domain CH56_2597 PF09134 Invasin, domain 3 CH56_2598 PF01266 FAD dependent oxidoreductase CH56_2599 PF00196 Bacterial regulatory proteins, luxR family CH56_26 PF01008 Initiation factor 2 subunit family CH56_260 PF04794 YdjC-like protein CH56_2600 PF01594 AI-2E family transporter CH56_2604 PF03472 Autoinducer binding domain CH56_2604 PF00196 Bacterial regulatory proteins, luxR family CH56_2605 PF00765 Autoinducer synthase CH56_2606 PF03466 LysR substrate binding domain CH56_2606 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH56_2608 PF00083 Sugar (and other) transporter CH56_2610 PF00248 Aldo/keto reductase family CH56_2611 PF09618 CRISPR-associated protein (Cas_Csy4) CH56_2612 PF09615 CRISPR-associated protein (Cas_Csy3) CH56_2613 PF09614 CRISPR-associated protein (Cas_Csy2) CH56_2614 PF09611 CRISPR-associated protein (Cas_Csy1) CH56_2617 PF01867 CRISPR associated protein Cas1 CH56_2618 PF00924 Mechanosensitive ion channel CH56_2622 PF04041 beta-1,4-mannooligosaccharide phosphorylase CH56_2623 PF00528 Binding-protein-dependent transport system inner membrane component CH56_2624 PF00528 Binding-protein-dependent transport system inner membrane component CH56_2627 PF00356 Bacterial regulatory proteins, lacI family CH56_2628 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I CH56_2628 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II CH56_2628 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III CH56_2628 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain CH56_2629 PF00005 ABC transporter CH56_2629 PF17912 MalK OB fold domain CH56_263 PF17206 SeqA protein N-terminal domain CH56_263 PF03925 SeqA protein C-terminal domain CH56_2631 PF13332 Hemagglutinin repeat CH56_2631 PF05860 haemagglutination activity domain CH56_2631 PF15526 Novel toxin 21 CH56_2631 PF04829 Pre-toxin domain with VENN motif CH56_2631 PF05594 Haemagluttinin repeat CH56_2636 PF05860 haemagglutination activity domain CH56_2636 PF13018 Extended Signal Peptide of Type V secretion system CH56_2636 PF04829 Pre-toxin domain with VENN motif CH56_2636 PF13332 Hemagglutinin repeat CH56_2639 PF13018 Extended Signal Peptide of Type V secretion system CH56_2639 PF13332 Hemagglutinin repeat CH56_2639 PF04829 Pre-toxin domain with VENN motif CH56_2639 PF05860 haemagglutination activity domain CH56_264 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II CH56_264 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III CH56_264 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I CH56_264 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain CH56_2640 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB CH56_2640 PF08479 POTRA domain, ShlB-type CH56_2640 PF17287 POTRA domain CH56_2641 PF17287 POTRA domain CH56_2641 PF08479 POTRA domain, ShlB-type CH56_2641 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB CH56_2642 PF00175 Oxidoreductase NAD-binding domain CH56_2642 PF00970 Oxidoreductase FAD-binding domain CH56_2642 PF00111 2Fe-2S iron-sulfur cluster binding domain CH56_2643 PF00848 Ring hydroxylating alpha subunit (catalytic domain) CH56_2643 PF00355 Rieske [2Fe-2S] domain CH56_2644 PF02028 BCCT, betaine/carnitine/choline family transporter CH56_2645 PF00180 Isocitrate/isopropylmalate dehydrogenase CH56_2646 PF03466 LysR substrate binding domain CH56_2646 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH56_2647 PF00356 Bacterial regulatory proteins, lacI family CH56_2648 PF02653 Branched-chain amino acid transport system / permease component CH56_2649 PF00005 ABC transporter CH56_2650 PF13407 Periplasmic binding protein domain CH56_2651 PF00107 Zinc-binding dehydrogenase CH56_2651 PF08240 Alcohol dehydrogenase GroES-like domain CH56_2655 PF13505 Outer membrane protein beta-barrel domain CH56_2656 PF00892 EamA-like transporter family CH56_2658 PF13649 Methyltransferase domain CH56_2659 PF00210 Ferritin-like domain CH56_2661 PF00497 Bacterial extracellular solute-binding proteins, family 3 CH56_2662 PF00528 Binding-protein-dependent transport system inner membrane component CH56_2663 PF00005 ABC transporter CH56_2664 PF13426 PAS domain CH56_2664 PF08447 PAS fold CH56_2664 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CH56_2665 PF05971 RNA methyltransferase CH56_2666 PF07338 Protein of unknown function (DUF1471) CH56_2667 PF02885 Glycosyl transferase family, helical bundle domain CH56_2668 PF13193 AMP-binding enzyme C-terminal domain CH56_2668 PF00501 AMP-binding enzyme CH56_2669 PF13378 Enolase C-terminal domain-like CH56_2670 PF00378 Enoyl-CoA hydratase/isomerase CH56_2671 PF12697 Alpha/beta hydrolase family CH56_2672 PF16582 Middle domain of thiamine pyrophosphate CH56_2672 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CH56_2672 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CH56_2673 PF00425 chorismate binding enzyme CH56_2675 PF05957 Bacterial protein of unknown function (DUF883) CH56_2677 PF00920 Dehydratase family CH56_2678 PF03928 Haem-degrading CH56_2679 PF07690 Major Facilitator Superfamily CH56_268 PF00072 Response regulator receiver domain CH56_268 PF00486 Transcriptional regulatory protein, C terminal CH56_2680 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CH56_2680 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CH56_2681 PF00356 Bacterial regulatory proteins, lacI family CH56_2683 PF00106 short chain dehydrogenase CH56_2684 PF01202 Shikimate kinase CH56_2685 PF04074 YhcH/YjgK/YiaL CH56_2687 PF00361 Proton-conducting membrane transporter CH56_2688 PF00361 Proton-conducting membrane transporter CH56_2689 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus CH56_2689 PF00361 Proton-conducting membrane transporter CH56_269 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH56_269 PF13492 GAF domain CH56_269 PF00512 His Kinase A (phospho-acceptor) domain CH56_269 PF02702 Osmosensitive K+ channel His kinase sensor domain CH56_269 PF13493 Domain of unknown function (DUF4118) CH56_2690 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L CH56_2691 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 CH56_2692 PF12838 4Fe-4S dicluster domain CH56_2693 PF00146 NADH dehydrogenase CH56_2694 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CH56_2694 PF00384 Molybdopterin oxidoreductase CH56_2694 PF01568 Molydopterin dinucleotide binding domain CH56_2694 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region CH56_2695 PF10531 SLBB domain CH56_2695 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region CH56_2695 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit CH56_2697 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit CH56_2697 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit CH56_2698 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit CH56_2699 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 CH56_27 PF03079 ARD/ARD' family CH56_270 PF02669 K+-transporting ATPase, c chain CH56_2700 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH56_2700 PF03466 LysR substrate binding domain CH56_2701 PF00155 Aminotransferase class I and II CH56_2703 PF03600 Citrate transporter CH56_2703 PF02080 TrkA-C domain CH56_2704 PF13419 Haloacid dehalogenase-like hydrolase CH56_2705 PF03887 YfbU domain CH56_2706 PF04217 Protein of unknown function, DUF412 CH56_2707 PF00871 Acetokinase family CH56_2708 PF07085 DRTGG domain CH56_2708 PF01515 Phosphate acetyl/butaryl transferase CH56_2709 PF01797 Transposase IS200 like CH56_2710 PF01494 FAD binding domain CH56_2711 PF01938 TRAM domain CH56_2711 PF04055 Radical SAM superfamily CH56_2711 PF00919 Uncharacterized protein family UPF0004 CH56_2712 PF02562 PhoH-like protein CH56_2713 PF02130 Uncharacterized protein family UPF0054 CH56_2714 PF00571 CBS domain CH56_2714 PF03471 Transporter associated domain CH56_2715 PF00795 Carbon-nitrogen hydrolase CH56_2716 PF00497 Bacterial extracellular solute-binding proteins, family 3 CH56_2719 PF00528 Binding-protein-dependent transport system inner membrane component CH56_272 PF03814 Potassium-transporting ATPase A subunit CH56_2720 PF00528 Binding-protein-dependent transport system inner membrane component CH56_2721 PF00528 Binding-protein-dependent transport system inner membrane component CH56_2722 PF00005 ABC transporter CH56_2723 PF07295 Zinc-ribbon containing domain CH56_2724 PF08264 Anticodon-binding domain of tRNA CH56_2724 PF13603 Leucyl-tRNA synthetase, Domain 2 CH56_2724 PF00133 tRNA synthetases class I (I, L, M and V) CH56_2725 PF04390 Lipopolysaccharide-assembly CH56_2726 PF06144 DNA polymerase III, delta subunit CH56_2726 PF14840 Processivity clamp loader gamma complex DNA pol III C-term CH56_2727 PF01467 Cytidylyltransferase-like CH56_2729 PF02590 Predicted SPOUT methyltransferase CH56_273 PF10725 Protein of unknown function (DUF2517) CH56_2730 PF03717 Penicillin-binding Protein dimerisation domain CH56_2730 PF00905 Penicillin binding protein transpeptidase domain CH56_2731 PF01098 Cell cycle protein CH56_2732 PF03330 Lytic transglycolase CH56_2732 PF05036 Sporulation related domain CH56_2733 PF00768 D-alanyl-D-alanine carboxypeptidase CH56_2733 PF07943 Penicillin-binding protein 5, C-terminal domain CH56_2734 PF04359 Protein of unknown function (DUF493) CH56_2735 PF03099 Biotin/lipoate A/B protein ligase family CH56_2736 PF04055 Radical SAM superfamily CH56_2736 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family CH56_2737 PF02416 mttA/Hcf106 family CH56_2738 PF02537 CrcB-like protein, Camphor Resistance (CrcB) CH56_2739 PF00313 'Cold-shock' DNA-binding domain CH56_274 PF08349 Protein of unknown function (DUF1722) CH56_2740 PF00313 'Cold-shock' DNA-binding domain CH56_2741 PF00196 Bacterial regulatory proteins, luxR family CH56_2746 PF00005 ABC transporter CH56_2746 PF00664 ABC transporter transmembrane region CH56_2748 PF04962 KduI/IolB family CH56_2749 PF01261 Xylose isomerase-like TIM barrel CH56_275 PF03441 FAD binding domain of DNA photolyase CH56_275 PF00875 DNA photolyase CH56_2750 PF00294 pfkB family carbohydrate kinase CH56_2751 PF02894 Oxidoreductase family, C-terminal alpha/beta domain CH56_2751 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CH56_2752 PF02653 Branched-chain amino acid transport system / permease component CH56_2753 PF00005 ABC transporter CH56_2754 PF13407 Periplasmic binding protein domain CH56_2755 PF02894 Oxidoreductase family, C-terminal alpha/beta domain CH56_2755 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CH56_2756 PF02894 Oxidoreductase family, C-terminal alpha/beta domain CH56_2756 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CH56_2757 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CH56_2757 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CH56_2757 PF00205 Thiamine pyrophosphate enzyme, central domain CH56_2758 PF00171 Aldehyde dehydrogenase family CH56_276 PF02112 cAMP phosphodiesterases class-II CH56_2764 PF01835 MG2 domain CH56_2764 PF11974 Bacterial alpha-2-macroglobulin MG3 domain CH56_2764 PF17962 Bacterial macroglobulin domain 6 CH56_2764 PF07703 Alpha-2-macroglobulin bait region domain CH56_2764 PF00207 Alpha-2-macroglobulin family CH56_2764 PF17972 Bacterial Alpha-2-macroglobulin MG5 domain CH56_2764 PF17973 Bacterial Alpha-2-macroglobulin MG10 domain CH56_2765 PF00905 Penicillin binding protein transpeptidase domain CH56_2765 PF06832 Penicillin-Binding Protein C-terminus Family CH56_2765 PF00912 Transglycosylase CH56_2766 PF13693 Winged helix-turn-helix DNA-binding CH56_277 PF01784 NIF3 (NGG1p interacting factor 3) CH56_2770 PF05638 Type VI secretion system effector, Hcp CH56_2773 PF03797 Autotransporter beta-domain CH56_2773 PF16168 Adhesin of bacterial autotransporter system, probable stalk CH56_2773 PF13018 Extended Signal Peptide of Type V secretion system CH56_2773 PF03212 Pertactin CH56_2775 PF08007 Cupin superfamily protein CH56_2776 PF00872 Transposase, Mutator family CH56_2777 PF00872 Transposase, Mutator family CH56_2782 PF14310 Fibronectin type III-like domain CH56_2782 PF00933 Glycosyl hydrolase family 3 N terminal domain CH56_2782 PF01915 Glycosyl hydrolase family 3 C-terminal domain CH56_2784 PF00248 Aldo/keto reductase family CH56_2785 PF00248 Aldo/keto reductase family CH56_2786 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH56_2786 PF03466 LysR substrate binding domain CH56_2787 PF02796 Helix-turn-helix domain of resolvase CH56_2787 PF00665 Integrase core domain CH56_2789 PF01695 IstB-like ATP binding protein CH56_279 PF02682 Carboxyltransferase domain, subdomain C and D CH56_2790 PF01026 TatD related DNase CH56_2791 PF00490 Delta-aminolevulinic acid dehydratase CH56_2792 PF02357 Transcription termination factor nusG CH56_2793 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase CH56_2794 PF00970 Oxidoreductase FAD-binding domain CH56_2794 PF00175 Oxidoreductase NAD-binding domain CH56_2795 PF00108 Thiolase, N-terminal domain CH56_2795 PF02803 Thiolase, C-terminal domain CH56_2796 PF00378 Enoyl-CoA hydratase/isomerase CH56_2796 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain CH56_2796 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain CH56_2797 PF00557 Metallopeptidase family M24 CH56_2798 PF09186 Domain of unknown function (DUF1949) CH56_2798 PF01205 Uncharacterized protein family UPF0029 CH56_2799 PF02386 Cation transport protein CH56_280 PF02626 Carboxyltransferase domain, subdomain A and B CH56_2800 PF12724 Flavodoxin domain CH56_2806 PF00872 Transposase, Mutator family CH56_2808 PF08274 PhnA Zinc-Ribbon CH56_2808 PF03831 PhnA domain CH56_281 PF03746 LamB/YcsF family CH56_2814 PF04717 Type VI secretion system, phage-baseplate injector CH56_2816 PF00872 Transposase, Mutator family CH56_2819 PF00665 Integrase core domain CH56_2819 PF02796 Helix-turn-helix domain of resolvase CH56_2820 PF00109 Beta-ketoacyl synthase, N-terminal domain CH56_2820 PF02801 Beta-ketoacyl synthase, C-terminal domain CH56_2822 PF07977 FabA-like domain CH56_2823 PF13654 AAA domain CH56_2823 PF05362 Lon protease (S16) C-terminal proteolytic domain CH56_2824 PF06303 MatP N-terminal domain CH56_2824 PF17414 MatP C-terminal ribbon-helix-helix domain CH56_2826 PF02901 Pyruvate formate lyase-like CH56_2826 PF01228 Glycine radical CH56_2827 PF01226 Formate/nitrite transporter CH56_2828 PF18381 YcaO cyclodehydratase C-terminal domain CH56_2828 PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding CH56_2829 PF00710 Asparaginase, N-terminal CH56_2829 PF17763 Glutaminase/Asparaginase C-terminal domain CH56_2830 PF13018 Extended Signal Peptide of Type V secretion system CH56_2830 PF05658 Head domain of trimeric autotransporter adhesin CH56_2830 PF05662 Coiled stalk of trimeric autotransporter adhesin CH56_2830 PF03895 YadA-like membrane anchor domain CH56_2830 PF13018 Extended Signal Peptide of Type V secretion system CH56_2830 PF03895 YadA-like membrane anchor domain CH56_2830 PF05662 Coiled stalk of trimeric autotransporter adhesin CH56_2830 PF05658 Head domain of trimeric autotransporter adhesin CH56_2832 PF00266 Aminotransferase class-V CH56_2833 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) CH56_2834 PF02224 Cytidylate kinase CH56_2835 PF00575 S1 RNA binding domain CH56_2836 PF00216 Bacterial DNA-binding protein CH56_2838 PF03772 Competence protein CH56_2838 PF00753 Metallo-beta-lactamase superfamily CH56_2839 PF00664 ABC transporter transmembrane region CH56_2839 PF00005 ABC transporter CH56_284 PF01470 Pyroglutamyl peptidase CH56_2840 PF02606 Tetraacyldisaccharide-1-P 4'-kinase CH56_2841 PF07063 Domain of unknown function (DUF1338) CH56_2842 PF00313 'Cold-shock' DNA-binding domain CH56_2843 PF03966 Trm112p-like protein CH56_2844 PF02348 Cytidylyltransferase CH56_2845 PF01636 Phosphotransferase enzyme family CH56_2847 PF03882 MukF winged-helix domain CH56_2847 PF17193 MukF C-terminal domain CH56_2847 PF17192 MukF middle domain CH56_2848 PF04288 MukE-like family CH56_2849 PF04310 MukB N-terminal CH56_2849 PF16330 MukB hinge domain CH56_285 PF03167 Uracil DNA glycosylase superfamily CH56_2852 PF03734 L,D-transpeptidase catalytic domain CH56_2852 PF01471 Putative peptidoglycan binding domain CH56_2853 PF05951 Bacterial protein of unknown function (DUF882) CH56_2854 PF00753 Metallo-beta-lactamase superfamily CH56_2855 PF00155 Aminotransferase class I and II CH56_2857 PF00267 Gram-negative porin CH56_2858 PF01336 OB-fold nucleic acid binding domain CH56_2858 PF00152 tRNA synthetases class II (D, K and N) CH56_2859 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain CH56_2859 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family CH56_286 PF01228 Glycine radical CH56_2860 PF01433 Peptidase family M1 domain CH56_2860 PF17432 Domain of unknown function (DUF3458_C) ARM repeats CH56_2860 PF11940 Domain of unknown function (DUF3458) Ig-like fold CH56_2861 PF01180 Dihydroorotate dehydrogenase CH56_2862 PF07126 Cell-division protein ZapC CH56_2863 PF00111 2Fe-2S iron-sulfur cluster binding domain CH56_2863 PF03476 MOSC N-terminal beta barrel domain CH56_2863 PF03473 MOSC domain CH56_2864 PF10672 S-adenosylmethionine-dependent methyltransferase CH56_2864 PF01170 Putative RNA methylase family UPF0020 CH56_2864 PF02926 THUMP domain CH56_2865 PF16326 ABC transporter C-terminal domain CH56_2865 PF00005 ABC transporter CH56_2865 PF12848 ABC transporter CH56_2866 PF04403 Paraquat-inducible protein A CH56_2867 PF02470 MlaD protein CH56_2868 PF03886 ABC-type transport auxiliary lipoprotein component CH56_2869 PF01797 Transposase IS200 like CH56_2870 PF02369 Bacterial Ig-like domain (group 1) CH56_2870 PF11924 Inverse autotransporter, beta-domain CH56_2870 PF07979 Intimin C-type lectin domain CH56_2870 PF09134 Invasin, domain 3 CH56_2871 PF05130 FlgN protein CH56_2872 PF04316 Anti-sigma-28 factor, FlgM CH56_2873 PF13144 Chaperone for flagella basal body P-ring formation CH56_2873 PF17656 FlgA N-terminal domain CH56_2874 PF00460 Flagella basal body rod protein CH56_2875 PF00460 Flagella basal body rod protein CH56_2875 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CH56_2876 PF13860 FlgD Ig-like domain CH56_2876 PF13861 FlgD Tudor-like domain CH56_2876 PF03963 Flagellar hook capping protein - N-terminal region CH56_2877 PF07559 Flagellar basal body protein FlaE CH56_2877 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CH56_2877 PF00460 Flagella basal body rod protein CH56_2878 PF00460 Flagella basal body rod protein CH56_2878 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CH56_2879 PF00460 Flagella basal body rod protein CH56_2879 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CH56_2880 PF02107 Flagellar L-ring protein CH56_2881 PF02119 Flagellar P-ring protein CH56_2882 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase CH56_2882 PF10135 Rod binding protein CH56_2883 PF00460 Flagella basal body rod protein CH56_2883 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CH56_2885 PF00669 Bacterial flagellin N-terminal helical region CH56_2886 PF02050 Flagellar FliJ protein CH56_2887 PF18269 T3SS EscN ATPase C-terminal domain CH56_2887 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CH56_2888 PF02108 Flagellar assembly protein FliH CH56_2889 PF14842 FliG N-terminal domain CH56_2889 PF01706 FliG C-terminal domain CH56_2889 PF14841 FliG middle domain CH56_289 PF12796 Ankyrin repeats (3 copies) CH56_2890 PF01514 Secretory protein of YscJ/FliF family CH56_2890 PF08345 Flagellar M-ring protein C-terminal CH56_2891 PF02049 Flagellar hook-basal body complex protein FliE CH56_2894 PF00730 HhH-GPD superfamily base excision DNA repair protein CH56_2895 PF01966 HD domain CH56_2896 PF00672 HAMP domain CH56_2896 PF00211 Adenylate and Guanylate cyclase catalytic domain CH56_2896 PF02743 Cache domain CH56_2897 PF12833 Helix-turn-helix domain CH56_2898 PF05400 Flagellar protein FliT CH56_2899 PF02561 Flagellar protein FliS CH56_29 PF00596 Class II Aldolase and Adducin N-terminal domain CH56_2900 PF07196 Flagellin hook IN motif CH56_2900 PF07195 Flagellar hook-associated protein 2 C-terminus CH56_2900 PF02465 Flagellar hook-associated protein 2 N-terminus CH56_2901 PF00700 Bacterial flagellin C-terminal helical region CH56_2901 PF08884 Flagellin D3 domain CH56_2901 PF00669 Bacterial flagellin N-terminal helical region CH56_2902 PF01695 IstB-like ATP binding protein CH56_2905 PF02796 Helix-turn-helix domain of resolvase CH56_2905 PF00665 Integrase core domain CH56_2906 PF00669 Bacterial flagellin N-terminal helical region CH56_2906 PF00700 Bacterial flagellin C-terminal helical region CH56_2906 PF08884 Flagellin D3 domain CH56_2907 PF04542 Sigma-70 region 2 CH56_2907 PF04539 Sigma-70 region 3 CH56_2907 PF04545 Sigma-70, region 4 CH56_2908 PF02899 Phage integrase, N-terminal SAM-like domain CH56_2909 PF00291 Pyridoxal-phosphate dependent enzyme CH56_291 PF00271 Helicase conserved C-terminal domain CH56_291 PF00270 DEAD/DEAH box helicase CH56_2915 PF14850 DNA-binding domain of Proline dehydrogenase CH56_2915 PF01619 Proline dehydrogenase CH56_2915 PF00171 Aldehyde dehydrogenase family CH56_2915 PF18327 Proline utilization A proline dehydrogenase N-terminal domain CH56_2917 PF00474 Sodium:solute symporter family CH56_2918 PF03239 Iron permease FTR1 family CH56_2919 PF09375 Imelysin CH56_2919 PF13473 Cupredoxin-like domain CH56_292 PF05175 Methyltransferase small domain CH56_2920 PF04261 Dyp-type peroxidase family CH56_2921 PF03358 NADPH-dependent FMN reductase CH56_2922 PF01344 Kelch motif CH56_2923 PF00324 Amino acid permease CH56_2925 PF13505 Outer membrane protein beta-barrel domain CH56_2927 PF06942 GlpM protein CH56_2928 PF10769 Protein of unknown function (DUF2594) CH56_2929 PF00196 Bacterial regulatory proteins, luxR family CH56_2929 PF00072 Response regulator receiver domain CH56_293 PF02910 Fumarate reductase flavoprotein C-term CH56_293 PF00890 FAD binding domain CH56_2930 PF08459 UvrC Helix-hairpin-helix N-terminal CH56_2930 PF01541 GIY-YIG catalytic domain CH56_2930 PF02151 UvrB/uvrC motif CH56_2931 PF01066 CDP-alcohol phosphatidyltransferase CH56_294 PF04542 Sigma-70 region 2 CH56_294 PF08281 Sigma-70, region 4 CH56_2940 PF05638 Type VI secretion system effector, Hcp CH56_295 PF03873 Anti sigma-E protein RseA, C-terminal domain CH56_295 PF03872 Anti sigma-E protein RseA, N-terminal domain CH56_2952 PF00872 Transposase, Mutator family CH56_2953 PF00872 Transposase, Mutator family CH56_2959 PF02894 Oxidoreductase family, C-terminal alpha/beta domain CH56_2959 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CH56_296 PF17188 MucB/RseB C-terminal domain CH56_296 PF03888 MucB/RseB N-terminal domain CH56_2961 PF00528 Binding-protein-dependent transport system inner membrane component CH56_2962 PF00528 Binding-protein-dependent transport system inner membrane component CH56_2963 PF08402 TOBE domain CH56_2963 PF00005 ABC transporter CH56_2966 PF02796 Helix-turn-helix domain of resolvase CH56_2966 PF00665 Integrase core domain CH56_2967 PF01695 IstB-like ATP binding protein CH56_2975 PF00593 TonB dependent receptor CH56_2975 PF07715 TonB-dependent Receptor Plug Domain CH56_2976 PF13193 AMP-binding enzyme C-terminal domain CH56_2976 PF00501 AMP-binding enzyme CH56_2977 PF00975 Thioesterase domain CH56_2979 PF00109 Beta-ketoacyl synthase, N-terminal domain CH56_2979 PF02801 Beta-ketoacyl synthase, C-terminal domain CH56_2979 PF00550 Phosphopantetheine attachment site CH56_2979 PF00668 Condensation domain CH56_2979 PF00698 Acyl transferase domain CH56_2979 PF16197 Ketoacyl-synthetase C-terminal extension CH56_2980 PF00668 Condensation domain CH56_2980 PF08242 Methyltransferase domain CH56_2980 PF00550 Phosphopantetheine attachment site CH56_2980 PF00501 AMP-binding enzyme CH56_2982 PF08021 Siderophore-interacting FAD-binding domain CH56_2982 PF04954 Siderophore-interacting protein CH56_2982 PF00005 ABC transporter CH56_2982 PF00664 ABC transporter transmembrane region CH56_2983 PF00664 ABC transporter transmembrane region CH56_2983 PF00005 ABC transporter CH56_2984 PF07690 Major Facilitator Superfamily CH56_2985 PF00425 chorismate binding enzyme CH56_2986 PF13356 Arm DNA-binding domain CH56_2986 PF00589 Phage integrase family CH56_2988 PF02753 Pili assembly chaperone PapD, C-terminal domain CH56_2988 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain CH56_299 PF06421 GTP-binding protein LepA C-terminus CH56_299 PF00009 Elongation factor Tu GTP binding domain CH56_299 PF00679 Elongation factor G C-terminus CH56_299 PF03144 Elongation factor Tu domain 2 CH56_2990 PF00577 Outer membrane usher protein CH56_2990 PF13954 PapC N-terminal domain CH56_2990 PF13953 PapC C-terminal domain CH56_2991 PF02753 Pili assembly chaperone PapD, C-terminal domain CH56_2991 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain CH56_2993 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH56_2993 PF00072 Response regulator receiver domain CH56_2993 PF00497 Bacterial extracellular solute-binding proteins, family 3 CH56_2993 PF00989 PAS fold CH56_2993 PF01627 Hpt domain CH56_2993 PF00512 His Kinase A (phospho-acceptor) domain CH56_2994 PF00497 Bacterial extracellular solute-binding proteins, family 3 CH56_2994 PF00072 Response regulator receiver domain CH56_2994 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH56_2994 PF00512 His Kinase A (phospho-acceptor) domain CH56_2995 PF00196 Bacterial regulatory proteins, luxR family CH56_2995 PF00072 Response regulator receiver domain CH56_2997 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain CH56_2997 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain CH56_2998 PF01575 MaoC like domain CH56_2999 PF03328 HpcH/HpaI aldolase/citrate lyase family CH56_30 PF00155 Aminotransferase class I and II CH56_300 PF10502 Signal peptidase, peptidase S26 CH56_3000 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH56_3000 PF03466 LysR substrate binding domain CH56_3004 PF04909 Amidohydrolase CH56_3006 PF02508 Rnf-Nqr subunit, membrane protein CH56_3007 PF00155 Aminotransferase class I and II CH56_3008 PF00324 Amino acid permease CH56_3009 PF00455 DeoR C terminal sensor domain CH56_3009 PF08220 DeoR-like helix-turn-helix domain CH56_301 PF00035 Double-stranded RNA binding motif CH56_301 PF14622 Ribonuclease-III-like CH56_3010 PF04960 Glutaminase CH56_3012 PF03239 Iron permease FTR1 family CH56_3013 PF10634 Fe2+ transport protein CH56_3016 PF02687 FtsX-like permease family CH56_3016 PF12704 MacB-like periplasmic core domain CH56_3016 PF00005 ABC transporter CH56_3017 PF00578 AhpC/TSA family CH56_3019 PF09313 Domain of unknown function (DUF1971) CH56_3019 PF03848 Tellurite resistance protein TehB CH56_302 PF07650 KH domain CH56_302 PF01926 50S ribosome-binding GTPase CH56_3020 PF00557 Metallopeptidase family M24 CH56_3022 PF01522 Polysaccharide deacetylase CH56_3022 PF14883 Hypothetical glycosyl hydrolase family 13 CH56_3023 PF00535 Glycosyl transferase family 2 CH56_3024 PF13994 PgaD-like protein CH56_3026 PF00872 Transposase, Mutator family CH56_3027 PF00872 Transposase, Mutator family CH56_3028 PF03544 Gram-negative bacterial TonB protein C-terminal CH56_3029 PF03795 YCII-related domain CH56_303 PF02565 Recombination protein O C terminal CH56_303 PF11967 Recombination protein O N terminal CH56_3032 PF13505 Outer membrane protein beta-barrel domain CH56_3033 PF01695 IstB-like ATP binding protein CH56_3035 PF00665 Integrase core domain CH56_3035 PF02796 Helix-turn-helix domain of resolvase CH56_3036 PF13396 Phospholipase_D-nuclease N-terminal CH56_3036 PF13091 PLD-like domain CH56_3037 PF04269 Protein of unknown function, DUF440 CH56_3039 PF00005 ABC transporter CH56_3039 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CH56_304 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ CH56_3040 PF00005 ABC transporter CH56_3040 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CH56_3041 PF00528 Binding-protein-dependent transport system inner membrane component CH56_3041 PF12911 N-terminal TM domain of oligopeptide transport permease C CH56_3042 PF00528 Binding-protein-dependent transport system inner membrane component CH56_3043 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CH56_3044 PF01914 MarC family integral membrane protein CH56_3045 PF00171 Aldehyde dehydrogenase family CH56_3045 PF00465 Iron-containing alcohol dehydrogenase CH56_3046 PF00265 Thymidine kinase CH56_3047 PF00816 H-NS histone family CH56_3049 PF00872 Transposase, Mutator family CH56_305 PF01648 4'-phosphopantetheinyl transferase superfamily CH56_3050 PF00872 Transposase, Mutator family CH56_3051 PF02796 Helix-turn-helix domain of resolvase CH56_3051 PF00665 Integrase core domain CH56_3053 PF01695 IstB-like ATP binding protein CH56_3056 PF05772 NinB protein CH56_3058 PF06530 Phage antitermination protein Q CH56_307 PF12838 4Fe-4S dicluster domain CH56_3070 PF00872 Transposase, Mutator family CH56_308 PF01418 Helix-turn-helix domain, rpiR family CH56_308 PF01380 SIS domain CH56_3089 PF13472 GDSL-like Lipase/Acylhydrolase family CH56_3089 PF07859 alpha/beta hydrolase fold CH56_309 PF01380 SIS domain CH56_3091 PF01171 PP-loop family CH56_3092 PF10371 Domain of unknown function CH56_3092 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II CH56_3092 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase CH56_3092 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg CH56_3092 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CH56_3093 PF00893 Small Multidrug Resistance protein CH56_3094 PF02308 MgtC family CH56_3095 PF03891 Domain of unknown function (DUF333) CH56_3096 PF03724 META domain CH56_3097 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CH56_3097 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CH56_3098 PF11739 Dicarboxylate transport CH56_3099 PF13617 YnbE-like lipoprotein CH56_31 PF00795 Carbon-nitrogen hydrolase CH56_3100 PF07027 Protein of unknown function (DUF1318) CH56_3101 PF08125 Mannitol dehydrogenase C-terminal domain CH56_3101 PF01232 Mannitol dehydrogenase Rossmann domain CH56_3102 PF04198 Putative sugar-binding domain CH56_3102 PF00325 Bacterial regulatory proteins, crp family CH56_3103 PF02525 Flavodoxin-like fold CH56_3104 PF11898 Domain of unknown function (DUF3418) CH56_3104 PF00271 Helicase conserved C-terminal domain CH56_3104 PF00270 DEAD/DEAH box helicase CH56_3104 PF04408 Helicase associated domain (HA2) CH56_3104 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold CH56_3105 PF04408 Helicase associated domain (HA2) CH56_3105 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold CH56_3105 PF11898 Domain of unknown function (DUF3418) CH56_3105 PF00271 Helicase conserved C-terminal domain CH56_3105 PF00270 DEAD/DEAH box helicase CH56_3106 PF00271 Helicase conserved C-terminal domain CH56_3106 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold CH56_3106 PF04408 Helicase associated domain (HA2) CH56_3106 PF11898 Domain of unknown function (DUF3418) CH56_3106 PF00270 DEAD/DEAH box helicase CH56_3109 PF00089 Trypsin CH56_311 PF14437 MafB19-like deaminase CH56_3111 PF01292 Prokaryotic cytochrome b561 CH56_3112 PF04264 YceI-like domain CH56_3114 PF18807 Tripartite Tc toxins repeat CH56_3114 PF14431 YwqJ-like deaminase CH56_3116 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH56_3116 PF03466 LysR substrate binding domain CH56_3118 PF00694 Aconitase C-terminal domain CH56_3118 PF00330 Aconitase family (aconitate hydratase) CH56_3119 PF00925 GTP cyclohydrolase II CH56_312 PF01464 Transglycosylase SLT domain CH56_312 PF00497 Bacterial extracellular solute-binding proteins, family 3 CH56_3120 PF01569 PAP2 superfamily CH56_3121 PF06305 Lipopolysaccharide assembly protein A domain CH56_3122 PF18073 Rubredoxin metal binding domain CH56_3124 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family CH56_3125 PF01253 Translation initiation factor SUI1 CH56_3126 PF05433 Glycine zipper 2TM domain CH56_3127 PF00596 Class II Aldolase and Adducin N-terminal domain CH56_3129 PF00923 Transaldolase/Fructose-6-phosphate aldolase CH56_313 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain CH56_313 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal CH56_313 PF02769 AIR synthase related protein, C-terminal domain CH56_3130 PF04328 Selenoprotein, putative CH56_3131 PF13722 5TM C-terminal transporter carbon starvation CstA CH56_3131 PF02554 Carbon starvation protein CstA CH56_3132 PF08206 Ribonuclease B OB domain CH56_3132 PF17876 Cold shock domain CH56_3132 PF00773 RNB domain CH56_3132 PF00575 S1 RNA binding domain CH56_3133 PF07690 Major Facilitator Superfamily CH56_3134 PF01370 NAD dependent epimerase/dehydratase family CH56_3135 PF10576 Iron-sulfur binding domain of endonuclease III CH56_3135 PF00633 Helix-hairpin-helix motif CH56_3135 PF00730 HhH-GPD superfamily base excision DNA repair protein CH56_3136 PF02508 Rnf-Nqr subunit, membrane protein CH56_3137 PF04205 FMN-binding domain CH56_3138 PF03116 NQR2, RnfD, RnfE family CH56_3139 PF12833 Helix-turn-helix domain CH56_3139 PF06445 GyrI-like small molecule binding domain CH56_3141 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit CH56_3141 PF13375 RnfC Barrel sandwich hybrid domain CH56_3141 PF10531 SLBB domain CH56_3141 PF13237 4Fe-4S dicluster domain CH56_3142 PF04060 Putative Fe-S cluster CH56_3143 PF02508 Rnf-Nqr subunit, membrane protein CH56_3144 PF10754 Protein of unknown function (DUF2569) CH56_3145 PF00005 ABC transporter CH56_3145 PF00664 ABC transporter transmembrane region CH56_3145 PF03412 Peptidase C39 family CH56_3146 PF00664 ABC transporter transmembrane region CH56_3146 PF00005 ABC transporter CH56_3147 PF13533 Biotin-lipoyl like CH56_3149 PF00664 ABC transporter transmembrane region CH56_3149 PF00005 ABC transporter CH56_3149 PF03412 Peptidase C39 family CH56_3151 PF02610 L-arabinose isomerase CH56_3151 PF11762 L-arabinose isomerase C-terminal domain CH56_3152 PF02782 FGGY family of carbohydrate kinases, C-terminal domain CH56_3153 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family CH56_3154 PF00005 ABC transporter CH56_3155 PF02653 Branched-chain amino acid transport system / permease component CH56_3156 PF12833 Helix-turn-helix domain CH56_3156 PF02311 AraC-like ligand binding domain CH56_3157 PF02894 Oxidoreductase family, C-terminal alpha/beta domain CH56_3157 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CH56_3158 PF13593 SBF-like CPA transporter family (DUF4137) CH56_3160 PF06097 Bacterial protein of unknown function (DUF945) CH56_3161 PF01238 Phosphomannose isomerase type I CH56_3162 PF00206 Lyase CH56_3162 PF10415 Fumarase C C-terminus CH56_3163 PF05472 DNA replication terminus site-binding protein (Ter protein) CH56_3164 PF00356 Bacterial regulatory proteins, lacI family CH56_3165 PF00005 ABC transporter CH56_3166 PF01048 Phosphorylase superfamily CH56_3166 PF10423 Bacterial AMP nucleoside phosphorylase N-terminus CH56_317 PF01797 Transposase IS200 like CH56_3172 PF01797 Transposase IS200 like CH56_3176 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CH56_3176 PF00205 Thiamine pyrophosphate enzyme, central domain CH56_3176 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CH56_3177 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CH56_3177 PF00205 Thiamine pyrophosphate enzyme, central domain CH56_3177 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CH56_3178 PF01842 ACT domain CH56_3179 PF13419 Haloacid dehalogenase-like hydrolase CH56_318 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH56_318 PF00512 His Kinase A (phospho-acceptor) domain CH56_3181 PF00245 Alkaline phosphatase CH56_3182 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain CH56_3182 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain CH56_3183 PF00027 Cyclic nucleotide-binding domain CH56_3183 PF13545 Crp-like helix-turn-helix domain CH56_3184 PF00582 Universal stress protein family CH56_3185 PF00582 Universal stress protein family CH56_3186 PF02233 NAD(P) transhydrogenase beta subunit CH56_3187 PF01262 Alanine dehydrogenase/PNT, C-terminal domain CH56_3187 PF05222 Alanine dehydrogenase/PNT, N-terminal domain CH56_3187 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch CH56_3188 PF07338 Protein of unknown function (DUF1471) CH56_3189 PF13520 Amino acid permease CH56_319 PF13942 YfhG lipoprotein CH56_3191 PF00072 Response regulator receiver domain CH56_3191 PF00486 Transcriptional regulatory protein, C terminal CH56_3192 PF00672 HAMP domain CH56_3192 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH56_3192 PF00512 His Kinase A (phospho-acceptor) domain CH56_3193 PF00512 His Kinase A (phospho-acceptor) domain CH56_3193 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH56_3193 PF00672 HAMP domain CH56_3194 PF02074 Carboxypeptidase Taq (M32) metallopeptidase CH56_3196 PF01131 DNA topoisomerase CH56_3196 PF01396 Topoisomerase DNA binding C4 zinc finger CH56_3196 PF01751 Toprim domain CH56_3196 PF08272 Topoisomerase I zinc-ribbon-like CH56_3198 PF10692 Protein of unknown function (DUF2498) CH56_3199 PF01343 Peptidase family S49 CH56_3199 PF08496 Peptidase family S49 N-terminal CH56_32 PF01546 Peptidase family M20/M25/M40 CH56_32 PF07687 Peptidase dimerisation domain CH56_320 PF00158 Sigma-54 interaction domain CH56_320 PF00072 Response regulator receiver domain CH56_3200 PF00106 short chain dehydrogenase CH56_3201 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP CH56_3202 PF01479 S4 domain CH56_3202 PF00849 RNA pseudouridylate synthase CH56_3203 PF01300 Telomere recombination CH56_3204 PF02811 PHP domain CH56_3205 PF00425 chorismate binding enzyme CH56_3205 PF04715 Anthranilate synthase component I, N terminal region CH56_3206 PF00117 Glutamine amidotransferase class-I CH56_3207 PF00591 Glycosyl transferase family, a/b domain CH56_3207 PF02885 Glycosyl transferase family, helical bundle domain CH56_3208 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase CH56_3208 PF00218 Indole-3-glycerol phosphate synthase CH56_3209 PF00291 Pyridoxal-phosphate dependent enzyme CH56_321 PF02540 NAD synthase CH56_321 PF00795 Carbon-nitrogen hydrolase CH56_3210 PF00290 Tryptophan synthase alpha chain CH56_3214 PF00291 Pyridoxal-phosphate dependent enzyme CH56_3215 PF03922 OmpW family CH56_3219 PF04279 Intracellular septation protein A CH56_322 PF00543 Nitrogen regulatory protein P-II CH56_3220 PF03061 Thioesterase superfamily CH56_3221 PF00872 Transposase, Mutator family CH56_3222 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain CH56_3222 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain CH56_3222 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain CH56_3223 PF00072 Response regulator receiver domain CH56_3225 PF02810 SEC-C motif CH56_3226 PF00551 Formyl transferase CH56_3226 PF01842 ACT domain CH56_3229 PF00872 Transposase, Mutator family CH56_323 PF14503 YhfZ C-terminal domain CH56_323 PF14502 Helix-turn-helix domain CH56_3230 PF03466 LysR substrate binding domain CH56_3230 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH56_3231 PF03372 Endonuclease/Exonuclease/phosphatase family CH56_3232 PF00293 NUDIX domain CH56_3233 PF07383 Protein of unknown function (DUF1496) CH56_3234 PF01751 Toprim domain CH56_3234 PF01131 DNA topoisomerase CH56_3235 PF00586 AIR synthase related protein, N-terminal domain CH56_3235 PF02769 AIR synthase related protein, C-terminal domain CH56_3236 PF00881 Nitroreductase family CH56_3237 PF01343 Peptidase family S49 CH56_3238 PF00710 Asparaginase, N-terminal CH56_3238 PF17763 Glutaminase/Asparaginase C-terminal domain CH56_3239 PF00857 Isochorismatase family CH56_324 PF01695 IstB-like ATP binding protein CH56_3240 PF07023 Protein of unknown function (DUF1315) CH56_3241 PF01641 SelR domain CH56_3242 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain CH56_3242 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain CH56_3243 PF01263 Aldose 1-epimerase CH56_3244 PF06629 MltA-interacting protein MipA CH56_3245 PF06798 PrkA serine protein kinase C-terminal domain CH56_3245 PF08298 PrkA AAA domain CH56_3246 PF04285 Protein of unknown function (DUF444) CH56_3248 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH56_3248 PF03466 LysR substrate binding domain CH56_3249 PF05726 Pirin C-terminal cupin domain CH56_3249 PF02678 Pirin CH56_3250 PF07690 Major Facilitator Superfamily CH56_3251 PF01266 FAD dependent oxidoreductase CH56_3252 PF04293 SpoVR like protein CH56_3253 PF07840 FadR C-terminal domain CH56_3253 PF00392 Bacterial regulatory proteins, gntR family CH56_3254 PF06450 Bacterial Na+/H+ antiporter B (NhaB) CH56_3255 PF02600 Disulfide bond formation protein DsbB CH56_3258 PF00266 Aminotransferase class-V CH56_326 PF00665 Integrase core domain CH56_326 PF02796 Helix-turn-helix domain of resolvase CH56_3260 PF00872 Transposase, Mutator family CH56_3261 PF00872 Transposase, Mutator family CH56_3262 PF02413 Caudovirales tail fibre assembly protein, lambda gpK CH56_327 PF01026 TatD related DNase CH56_3278 PF08534 Redoxin CH56_3279 PF13378 Enolase C-terminal domain-like CH56_3279 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain CH56_328 PF00902 Sec-independent protein translocase protein (TatC) CH56_3280 PF00246 Zinc carboxypeptidase CH56_3281 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CH56_3282 PF01544 CorA-like Mg2+ transporter protein CH56_3283 PF01695 IstB-like ATP binding protein CH56_3284 PF00665 Integrase core domain CH56_3284 PF02796 Helix-turn-helix domain of resolvase CH56_3285 PF00589 Phage integrase family CH56_3285 PF12167 Arm DNA-binding domain CH56_3286 PF03692 Putative zinc- or iron-chelating domain CH56_3287 PF01557 Fumarylacetoacetate (FAA) hydrolase family CH56_3288 PF13406 Transglycosylase SLT domain CH56_3289 PF05166 YcgL domain CH56_3290 PF03775 Septum formation inhibitor MinC, C-terminal domain CH56_3290 PF05209 Septum formation inhibitor MinC, N-terminal domain CH56_3291 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain CH56_3292 PF03776 Septum formation topological specificity factor MinE CH56_3293 PF00570 HRDC domain CH56_3293 PF01612 3'-5' exonuclease CH56_3294 PF00501 AMP-binding enzyme CH56_3294 PF13193 AMP-binding enzyme C-terminal domain CH56_3295 PF03843 Outer membrane lipoprotein Slp family CH56_3296 PF00814 Glycoprotease family CH56_3297 PF04851 Type III restriction enzyme, res subunit CH56_3297 PF13307 Helicase C-terminal domain CH56_3298 PF01042 Endoribonuclease L-PSP CH56_3299 PF00893 Small Multidrug Resistance protein CH56_33 PF00266 Aminotransferase class-V CH56_330 PF02416 mttA/Hcf106 family CH56_3300 PF00893 Small Multidrug Resistance protein CH56_3301 PF01081 KDPG and KHG aldolase CH56_3303 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain CH56_3303 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain CH56_3304 PF01418 Helix-turn-helix domain, rpiR family CH56_3304 PF01380 SIS domain CH56_3305 PF02887 Pyruvate kinase, alpha/beta domain CH56_3305 PF00224 Pyruvate kinase, barrel domain CH56_3306 PF03279 Bacterial lipid A biosynthesis acyltransferase CH56_3307 PF08525 Opacity-associated protein A N-terminal motif CH56_3307 PF01476 LysM domain CH56_3307 PF01551 Peptidase family M23 CH56_3308 PF01297 Zinc-uptake complex component A periplasmic CH56_3309 PF00005 ABC transporter CH56_331 PF03109 ABC1 family CH56_3310 PF00950 ABC 3 transport family CH56_3311 PF05491 RuvB C-terminal winged helix domain CH56_3311 PF05496 Holliday junction DNA helicase RuvB P-loop domain CH56_3311 PF17864 RuvB AAA lid domain CH56_3312 PF01330 RuvA N terminal domain CH56_3312 PF07499 RuvA, C-terminal domain CH56_3313 PF02075 Crossover junction endodeoxyribonuclease RuvC CH56_3314 PF01709 Transcriptional regulator CH56_3315 PF00293 NUDIX domain CH56_3316 PF02938 GAD domain CH56_3316 PF00152 tRNA synthetases class II (D, K and N) CH56_3316 PF01336 OB-fold nucleic acid binding domain CH56_3317 PF01904 Protein of unknown function DUF72 CH56_3318 PF01124 MAPEG family CH56_3319 PF13649 Methyltransferase domain CH56_332 PF02036 SCP-2 sterol transfer family CH56_3320 PF08003 Protein of unknown function (DUF1698) CH56_3321 PF03932 CutC family CH56_3322 PF06185 YecM protein CH56_3323 PF05746 DALR anticodon binding domain CH56_3323 PF00750 tRNA synthetases class I (R) CH56_3323 PF03485 Arginyl tRNA synthetase N terminal domain CH56_3325 PF00872 Transposase, Mutator family CH56_3326 PF00872 Transposase, Mutator family CH56_3327 PF05860 haemagglutination activity domain CH56_3327 PF13332 Hemagglutinin repeat CH56_3328 PF13332 Hemagglutinin repeat CH56_3328 PF05860 haemagglutination activity domain CH56_3329 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB CH56_3329 PF08479 POTRA domain, ShlB-type CH56_3329 PF17287 POTRA domain CH56_333 PF01209 ubiE/COQ5 methyltransferase family CH56_3330 PF03023 Lipid II flippase MurJ CH56_3331 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CH56_3332 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CH56_3333 PF13302 Acetyltransferase (GNAT) domain CH56_3334 PF07690 Major Facilitator Superfamily CH56_3335 PF07273 Protein of unknown function (DUF1439) CH56_3336 PF02613 Nitrate reductase delta subunit CH56_3337 PF02811 PHP domain CH56_3338 PF08402 TOBE domain CH56_3338 PF00005 ABC transporter CH56_3339 PF00528 Binding-protein-dependent transport system inner membrane component CH56_334 PF02646 RmuC family CH56_3340 PF00528 Binding-protein-dependent transport system inner membrane component CH56_3342 PF03009 Glycerophosphoryl diester phosphodiesterase family CH56_3344 PF01740 STAS domain CH56_3344 PF00916 Sulfate permease family CH56_3346 PF00793 DAHP synthetase I family CH56_3347 PF13369 Transglutaminase-like superfamily CH56_3348 PF04247 Invasion gene expression up-regulator, SirB CH56_3349 PF13847 Methyltransferase domain CH56_3349 PF17827 PrmC N-terminal domain CH56_335 PF09335 SNARE associated Golgi protein CH56_3350 PF03462 PCRF domain CH56_3350 PF00472 RF-1 domain CH56_3351 PF01488 Shikimate / quinate 5-dehydrogenase CH56_3351 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain CH56_3351 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain CH56_3352 PF03550 Outer membrane lipoprotein LolB CH56_3353 PF08544 GHMP kinases C terminal CH56_3353 PF00288 GHMP kinases N terminal domain CH56_3354 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase CH56_3354 PF14572 Phosphoribosyl synthetase-associated domain CH56_3355 PF10762 Protein of unknown function (DUF2583) CH56_3356 PF01195 Peptidyl-tRNA hydrolase CH56_3357 PF06071 Protein of unknown function (DUF933) CH56_3357 PF01926 50S ribosome-binding GTPase CH56_336 PF13722 5TM C-terminal transporter carbon starvation CstA CH56_336 PF02554 Carbon starvation protein CstA CH56_3367 PF02129 X-Pro dipeptidyl-peptidase (S15 family) CH56_3368 PF00486 Transcriptional regulatory protein, C terminal CH56_3368 PF00072 Response regulator receiver domain CH56_3369 PF00512 His Kinase A (phospho-acceptor) domain CH56_3369 PF00672 HAMP domain CH56_3369 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH56_3378 PF08242 Methyltransferase domain CH56_338 PF01048 Phosphorylase superfamily CH56_3383 PF00872 Transposase, Mutator family CH56_339 PF01738 Dienelactone hydrolase family CH56_3393 PF01370 NAD dependent epimerase/dehydratase family CH56_3394 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III CH56_3394 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal CH56_3395 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal CH56_3395 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III CH56_3397 PF05962 HutD CH56_3398 PF01979 Amidohydrolase family CH56_3399 PF00392 Bacterial regulatory proteins, gntR family CH56_3399 PF07702 UTRA domain CH56_34 PF02796 Helix-turn-helix domain of resolvase CH56_34 PF00665 Integrase core domain CH56_340 PF01717 Cobalamin-independent synthase, Catalytic domain CH56_340 PF08267 Cobalamin-independent synthase, N-terminal domain CH56_3400 PF01979 Amidohydrolase family CH56_3402 PF00267 Gram-negative porin CH56_3403 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family CH56_3404 PF04996 Succinylarginine dihydrolase CH56_3405 PF00171 Aldehyde dehydrogenase family CH56_3406 PF04958 Arginine N-succinyltransferase beta subunit CH56_3407 PF00202 Aminotransferase class-III CH56_341 PF00892 EamA-like transporter family CH56_3410 PF00155 Aminotransferase class I and II CH56_3410 PF00392 Bacterial regulatory proteins, gntR family CH56_3411 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term CH56_3411 PF07730 Histidine kinase CH56_3411 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH56_3411 PF00672 HAMP domain CH56_3412 PF01699 Sodium/calcium exchanger protein CH56_3413 PF02562 PhoH-like protein CH56_3414 PF02562 PhoH-like protein CH56_3415 PF01695 IstB-like ATP binding protein CH56_3416 PF00665 Integrase core domain CH56_3416 PF02796 Helix-turn-helix domain of resolvase CH56_3417 PF18024 Helix-turn-helix domain CH56_3417 PF00158 Sigma-54 interaction domain CH56_342 PF03466 LysR substrate binding domain CH56_342 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH56_3420 PF05128 Domain of unknown function (DUF697) CH56_3421 PF04317 YcjX-like family, DUF463 CH56_3423 PF04024 PspC domain CH56_3424 PF06667 Phage shock protein B CH56_3425 PF04012 PspA/IM30 family CH56_3426 PF02954 Bacterial regulatory protein, Fis family CH56_3426 PF00158 Sigma-54 interaction domain CH56_3427 PF01797 Transposase IS200 like CH56_3428 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CH56_3429 PF00528 Binding-protein-dependent transport system inner membrane component CH56_343 PF03547 Membrane transport protein CH56_3430 PF12911 N-terminal TM domain of oligopeptide transport permease C CH56_3430 PF00528 Binding-protein-dependent transport system inner membrane component CH56_3431 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CH56_3431 PF00005 ABC transporter CH56_3432 PF00005 ABC transporter CH56_3435 PF00854 POT family CH56_3436 PF04893 Yip1 domain CH56_3437 PF11656 YjbD family (DUF3811) CH56_3438 PF00872 Transposase, Mutator family CH56_3439 PF00043 Glutathione S-transferase, C-terminal domain CH56_3439 PF02798 Glutathione S-transferase, N-terminal domain CH56_344 PF03009 Glycerophosphoryl diester phosphodiesterase family CH56_3440 PF08543 Phosphomethylpyrimidine kinase CH56_3441 PF08543 Phosphomethylpyrimidine kinase CH56_3442 PF00579 tRNA synthetases class I (W and Y) CH56_3442 PF01479 S4 domain CH56_3443 PF01243 Pyridoxamine 5'-phosphate oxidase CH56_3443 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region CH56_3444 PF09864 Membrane-bound lysozyme-inhibitor of c-type lysozyme CH56_3445 PF03702 Anhydro-N-acetylmuramic acid kinase CH56_3446 PF05433 Glycine zipper 2TM domain CH56_3448 PF01047 MarR family CH56_3449 PF00248 Aldo/keto reductase family CH56_345 PF17912 MalK OB fold domain CH56_345 PF00005 ABC transporter CH56_3450 PF06945 Protein of unknown function (DUF1289) CH56_3451 PF08019 Phosphoethanolamine transferase EptA/EptB CH56_3451 PF00884 Sulfatase CH56_3452 PF16925 Tetracyclin repressor-like, C-terminal domain CH56_3452 PF00440 Bacterial regulatory proteins, tetR family CH56_3453 PF00724 NADH:flavin oxidoreductase / NADH oxidase family CH56_3454 PF14431 YwqJ-like deaminase CH56_3454 PF18807 Tripartite Tc toxins repeat CH56_3455 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CH56_3456 PF00929 Exonuclease CH56_3457 PF00462 Glutaredoxin CH56_3459 PF00877 NlpC/P60 family CH56_346 PF00528 Binding-protein-dependent transport system inner membrane component CH56_3460 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain CH56_3460 PF02777 Iron/manganese superoxide dismutases, C-terminal domain CH56_3462 PF00356 Bacterial regulatory proteins, lacI family CH56_3463 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH56_3463 PF03466 LysR substrate binding domain CH56_3464 PF07690 Major Facilitator Superfamily CH56_3467 PF00677 Lumazine binding domain CH56_3468 PF01554 MatE CH56_347 PF00528 Binding-protein-dependent transport system inner membrane component CH56_3471 PF00224 Pyruvate kinase, barrel domain CH56_3471 PF02887 Pyruvate kinase, alpha/beta domain CH56_3472 PF04728 Lipoprotein leucine-zipper CH56_3474 PF00872 Transposase, Mutator family CH56_3475 PF02796 Helix-turn-helix domain of resolvase CH56_3475 PF00665 Integrase core domain CH56_3476 PF01695 IstB-like ATP binding protein CH56_3477 PF01476 LysM domain CH56_3477 PF17969 L,D-transpeptidase C-terminal domain CH56_3477 PF03734 L,D-transpeptidase catalytic domain CH56_3478 PF02657 Fe-S metabolism associated domain CH56_3479 PF00266 Aminotransferase class-V CH56_348 PF13416 Bacterial extracellular solute-binding protein CH56_3480 PF01458 Uncharacterized protein family (UPF0051) CH56_3481 PF00005 ABC transporter CH56_3482 PF01458 Uncharacterized protein family (UPF0051) CH56_3483 PF01521 Iron-sulphur cluster biosynthesis CH56_3484 PF03061 Thioesterase superfamily CH56_3485 PF13183 4Fe-4S dicluster domain CH56_3485 PF01565 FAD binding domain CH56_3485 PF02913 FAD linked oxidases, C-terminal domain CH56_3486 PF01594 AI-2E family transporter CH56_3488 PF02896 PEP-utilising enzyme, TIM barrel domain CH56_3488 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain CH56_3488 PF00391 PEP-utilising enzyme, mobile domain CH56_3489 PF03618 Kinase/pyrophosphorylase CH56_3490 PF03618 Kinase/pyrophosphorylase CH56_3491 PF00793 DAHP synthetase I family CH56_3492 PF02696 Uncharacterized ACR, YdiU/UPF0061 family CH56_3493 PF02696 Uncharacterized ACR, YdiU/UPF0061 family CH56_3494 PF10437 Bacterial lipoate protein ligase C-terminus CH56_3494 PF03099 Biotin/lipoate A/B protein ligase family CH56_3495 PF00877 NlpC/P60 family CH56_3497 PF00892 EamA-like transporter family CH56_3498 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase CH56_3499 PF01522 Polysaccharide deacetylase CH56_35 PF00437 Type II/IV secretion system protein CH56_3500 PF02911 Formyl transferase, C-terminal domain CH56_3500 PF01370 NAD dependent epimerase/dehydratase family CH56_3500 PF00551 Formyl transferase CH56_3501 PF00535 Glycosyl transferase family 2 CH56_3502 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family CH56_3503 PF01797 Transposase IS200 like CH56_3504 PF00005 ABC transporter CH56_3505 PF00255 Glutathione peroxidase CH56_3506 PF01032 FecCD transport family CH56_3509 PF00216 Bacterial DNA-binding protein CH56_3510 PF03483 B3/4 domain CH56_3510 PF03484 tRNA synthetase B5 domain CH56_3510 PF03147 Ferredoxin-fold anticodon binding domain CH56_3510 PF01588 Putative tRNA binding domain CH56_3510 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain CH56_3511 PF01409 tRNA synthetases class II core domain (F) CH56_3511 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain CH56_3512 PF00453 Ribosomal protein L20 CH56_3513 PF01632 Ribosomal protein L35 CH56_3514 PF05198 Translation initiation factor IF-3, N-terminal domain CH56_3514 PF00707 Translation initiation factor IF-3, C-terminal domain CH56_3515 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CH56_3515 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain CH56_3515 PF03129 Anticodon binding domain CH56_3515 PF02824 TGS domain CH56_3516 PF13619 KTSC domain CH56_3518 PF01914 MarC family integral membrane protein CH56_3519 PF01464 Transglycosylase SLT domain CH56_3520 PF01297 Zinc-uptake complex component A periplasmic CH56_3521 PF00005 ABC transporter CH56_3522 PF00950 ABC 3 transport family CH56_3523 PF00950 ABC 3 transport family CH56_3525 PF14002 YniB-like protein CH56_3526 PF13419 Haloacid dehalogenase-like hydrolase CH56_3527 PF13419 Haloacid dehalogenase-like hydrolase CH56_3528 PF00872 Transposase, Mutator family CH56_3529 PF07883 Cupin domain CH56_3530 PF04962 KduI/IolB family CH56_3532 PF06917 Periplasmic pectate lyase CH56_3533 PF00528 Binding-protein-dependent transport system inner membrane component CH56_3534 PF00528 Binding-protein-dependent transport system inner membrane component CH56_3535 PF00005 ABC transporter CH56_3535 PF03459 TOBE domain CH56_3535 PF17912 MalK OB fold domain CH56_3536 PF01547 Bacterial extracellular solute-binding protein CH56_3537 PF06178 Oligogalacturonate-specific porin protein (KdgM) CH56_3538 PF04307 LexA-binding, inner membrane-associated putative hydrolase CH56_3540 PF01510 N-acetylmuramoyl-L-alanine amidase CH56_3541 PF09339 IclR helix-turn-helix domain CH56_3541 PF01614 Bacterial transcriptional regulator CH56_3542 PF14583 Oligogalacturonate lyase CH56_3543 PF07690 Major Facilitator Superfamily CH56_3544 PF02753 Pili assembly chaperone PapD, C-terminal domain CH56_3544 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain CH56_3547 PF13954 PapC N-terminal domain CH56_3547 PF00577 Outer membrane usher protein CH56_3547 PF13953 PapC C-terminal domain CH56_3548 PF02753 Pili assembly chaperone PapD, C-terminal domain CH56_3548 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain CH56_3549 PF00419 Fimbrial protein CH56_3552 PF01435 Peptidase family M48 CH56_3553 PF03572 Peptidase family S41 CH56_3553 PF11818 C-terminal domain of tail specific protease (DUF3340) CH56_3553 PF00595 PDZ domain CH56_3553 PF17804 Tail specific protease N-terminal domain CH56_3554 PF04352 ProQ/FINO family CH56_3554 PF17516 ProQ C-terminal domain CH56_3555 PF13185 GAF domain CH56_3556 PF04403 Paraquat-inducible protein A CH56_3557 PF02470 MlaD protein CH56_3561 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain CH56_3561 PF02753 Pili assembly chaperone PapD, C-terminal domain CH56_3564 PF07351 Protein of unknown function (DUF1480) CH56_3566 PF00665 Integrase core domain CH56_3566 PF02796 Helix-turn-helix domain of resolvase CH56_3568 PF01695 IstB-like ATP binding protein CH56_357 PF00005 ABC transporter CH56_3570 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin CH56_3572 PF00929 Exonuclease CH56_3573 PF00075 RNase H CH56_3574 PF08241 Methyltransferase domain CH56_3575 PF00753 Metallo-beta-lactamase superfamily CH56_3575 PF16123 Hydroxyacylglutathione hydrolase C-terminus CH56_3576 PF01464 Transglycosylase SLT domain CH56_3576 PF01476 LysM domain CH56_3577 PF03372 Endonuclease/Exonuclease/phosphatase family CH56_3579 PF00248 Aldo/keto reductase family CH56_358 PF00005 ABC transporter CH56_358 PF12399 Branched-chain amino acid ATP-binding cassette transporter CH56_3580 PF00872 Transposase, Mutator family CH56_3581 PF00872 Transposase, Mutator family CH56_3582 PF13953 PapC C-terminal domain CH56_3582 PF00577 Outer membrane usher protein CH56_3582 PF13954 PapC N-terminal domain CH56_3583 PF00872 Transposase, Mutator family CH56_3584 PF00872 Transposase, Mutator family CH56_3585 PF13953 PapC C-terminal domain CH56_3585 PF13954 PapC N-terminal domain CH56_3585 PF00577 Outer membrane usher protein CH56_3586 PF02753 Pili assembly chaperone PapD, C-terminal domain CH56_3586 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain CH56_3587 PF16970 Type-1 fimbrial protein, A CH56_3588 PF17871 AAA lid domain CH56_3588 PF07724 AAA domain (Cdc48 subfamily) CH56_3588 PF10431 C-terminal, D2-small domain, of ClpB protein CH56_3588 PF00004 ATPase family associated with various cellular activities (AAA) CH56_359 PF00005 ABC transporter CH56_359 PF12399 Branched-chain amino acid ATP-binding cassette transporter CH56_3598 PF13406 Transglycosylase SLT domain CH56_36 PF04371 Porphyromonas-type peptidyl-arginine deiminase CH56_360 PF11862 Domain of unknown function (DUF3382) CH56_360 PF02653 Branched-chain amino acid transport system / permease component CH56_3600 PF00528 Binding-protein-dependent transport system inner membrane component CH56_3601 PF00005 ABC transporter CH56_3603 PF05638 Type VI secretion system effector, Hcp CH56_3605 PF01568 Molydopterin dinucleotide binding domain CH56_3605 PF00384 Molybdopterin oxidoreductase CH56_3605 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CH56_3606 PF12800 4Fe-4S binding domain CH56_3606 PF13247 4Fe-4S dicluster domain CH56_3607 PF04976 DMSO reductase anchor subunit (DmsC) CH56_3608 PF02613 Nitrate reductase delta subunit CH56_361 PF11862 Domain of unknown function (DUF3382) CH56_361 PF02653 Branched-chain amino acid transport system / permease component CH56_3610 PF05643 Putative bacterial lipoprotein (DUF799) CH56_3612 PF03783 Curli production assembly/transport component CsgG CH56_3614 PF01292 Prokaryotic cytochrome b561 CH56_3615 PF00155 Aminotransferase class I and II CH56_3616 PF07350 Protein of unknown function (DUF1479) CH56_3617 PF02685 Glucokinase CH56_3619 PF03466 LysR substrate binding domain CH56_3619 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH56_362 PF02653 Branched-chain amino acid transport system / permease component CH56_3620 PF00248 Aldo/keto reductase family CH56_3622 PF01566 Natural resistance-associated macrophage protein CH56_3623 PF01566 Natural resistance-associated macrophage protein CH56_3624 PF07662 Na+ dependent nucleoside transporter C-terminus CH56_3624 PF01773 Na+ dependent nucleoside transporter N-terminus CH56_3624 PF07670 Nucleoside recognition CH56_3625 PF07670 Nucleoside recognition CH56_3625 PF07662 Na+ dependent nucleoside transporter C-terminus CH56_3625 PF01773 Na+ dependent nucleoside transporter N-terminus CH56_3629 PF00749 tRNA synthetases class I (E and Q), catalytic domain CH56_363 PF13458 Periplasmic binding protein CH56_3633 PF12843 Putative quorum-sensing-regulated virulence factor CH56_3634 PF12826 Helix-hairpin-helix motif CH56_3634 PF03119 NAD-dependent DNA ligase C4 zinc finger domain CH56_3634 PF00533 BRCA1 C Terminus (BRCT) domain CH56_3634 PF01653 NAD-dependent DNA ligase adenylation domain CH56_3634 PF03120 NAD-dependent DNA ligase OB-fold domain CH56_3635 PF04354 ZipA, C-terminal FtsZ-binding domain CH56_3637 PF00291 Pyridoxal-phosphate dependent enzyme CH56_3638 PF00291 Pyridoxal-phosphate dependent enzyme CH56_3639 PF00381 PTS HPr component phosphorylation site CH56_364 PF12568 Acetyltransferase (GNAT) domain, PanZ CH56_3640 PF02896 PEP-utilising enzyme, TIM barrel domain CH56_3640 PF00391 PEP-utilising enzyme, mobile domain CH56_3640 PF05524 PEP-utilising enzyme, N-terminal CH56_3641 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 CH56_3642 PF01797 Transposase IS200 like CH56_3644 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH56_3644 PF00512 His Kinase A (phospho-acceptor) domain CH56_3644 PF16527 Two-component sensor protein CpxA, periplasmic domain CH56_3644 PF00672 HAMP domain CH56_3645 PF00072 Response regulator receiver domain CH56_3645 PF00486 Transcriptional regulatory protein, C terminal CH56_3646 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CH56_3647 PF00005 ABC transporter CH56_3647 PF02687 FtsX-like permease family CH56_3647 PF12704 MacB-like periplasmic core domain CH56_3648 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CH56_3648 PF07992 Pyridine nucleotide-disulphide oxidoreductase CH56_3649 PF00474 Sodium:solute symporter family CH56_3651 PF05195 Aminopeptidase P, N-terminal domain CH56_3651 PF00557 Metallopeptidase family M24 CH56_3653 PF00155 Aminotransferase class I and II CH56_3656 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH56_3656 PF00672 HAMP domain CH56_3656 PF00512 His Kinase A (phospho-acceptor) domain CH56_3657 PF00072 Response regulator receiver domain CH56_3657 PF00486 Transcriptional regulatory protein, C terminal CH56_3659 PF00291 Pyridoxal-phosphate dependent enzyme CH56_366 PF01695 IstB-like ATP binding protein CH56_3660 PF00005 ABC transporter CH56_3661 PF00528 Binding-protein-dependent transport system inner membrane component CH56_3662 PF00528 Binding-protein-dependent transport system inner membrane component CH56_3664 PF07690 Major Facilitator Superfamily CH56_3665 PF01418 Helix-turn-helix domain, rpiR family CH56_3665 PF01380 SIS domain CH56_3666 PF04074 YhcH/YjgK/YiaL CH56_3667 PF00480 ROK family CH56_3668 PF12468 Type III secretion system leucine rich repeat protein CH56_3669 PF04131 Putative N-acetylmannosamine-6-phosphate epimerase CH56_367 PF01695 IstB-like ATP binding protein CH56_3670 PF00701 Dihydrodipicolinate synthetase family CH56_3671 PF04261 Dyp-type peroxidase family CH56_3672 PF06572 Protein of unknown function (DUF1131) CH56_3673 PF04076 Bacterial OB fold (BOF) protein CH56_3674 PF03212 Pertactin CH56_3674 PF13018 Extended Signal Peptide of Type V secretion system CH56_3674 PF03797 Autotransporter beta-domain CH56_3674 PF16168 Adhesin of bacterial autotransporter system, probable stalk CH56_3677 PF00583 Acetyltransferase (GNAT) family CH56_3678 PF01218 Coproporphyrinogen III oxidase CH56_3679 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 CH56_3680 PF00390 Malic enzyme, N-terminal domain CH56_3680 PF03949 Malic enzyme, NAD binding domain CH56_3680 PF01515 Phosphate acetyl/butaryl transferase CH56_3681 PF00293 NUDIX domain CH56_3682 PF03264 NapC/NirT cytochrome c family, N-terminal region CH56_3683 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) CH56_3684 PF10518 TAT (twin-arginine translocation) pathway signal sequence CH56_3684 PF01568 Molydopterin dinucleotide binding domain CH56_3684 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CH56_3684 PF00384 Molybdopterin oxidoreductase CH56_3685 PF03927 NapD protein CH56_3686 PF13187 4Fe-4S dicluster domain CH56_3686 PF12800 4Fe-4S binding domain CH56_3686 PF00037 4Fe-4S binding domain CH56_3687 PF00072 Response regulator receiver domain CH56_3687 PF00196 Bacterial regulatory proteins, luxR family CH56_3689 PF00873 AcrB/AcrD/AcrF family CH56_369 PF00665 Integrase core domain CH56_369 PF02796 Helix-turn-helix domain of resolvase CH56_3690 PF02796 Helix-turn-helix domain of resolvase CH56_3690 PF00665 Integrase core domain CH56_3691 PF00665 Integrase core domain CH56_3691 PF02796 Helix-turn-helix domain of resolvase CH56_3694 PF01695 IstB-like ATP binding protein CH56_3699 PF00009 Elongation factor Tu GTP binding domain CH56_3699 PF03144 Elongation factor Tu domain 2 CH56_3699 PF03143 Elongation factor Tu C-terminal domain CH56_37 PF00795 Carbon-nitrogen hydrolase CH56_370 PF03143 Elongation factor Tu C-terminal domain CH56_370 PF00009 Elongation factor Tu GTP binding domain CH56_370 PF03144 Elongation factor Tu domain 2 CH56_3700 PF00584 SecE/Sec61-gamma subunits of protein translocation complex CH56_3701 PF02357 Transcription termination factor nusG CH56_3701 PF00467 KOW motif CH56_3702 PF00298 Ribosomal protein L11, RNA binding domain CH56_3702 PF03946 Ribosomal protein L11, N-terminal domain CH56_3703 PF00687 Ribosomal protein L1p/L10e family CH56_3704 PF00466 Ribosomal protein L10 CH56_3705 PF16320 Ribosomal protein L7/L12 dimerisation domain CH56_3705 PF00542 Ribosomal protein L7/L12 C-terminal domain CH56_3707 PF04563 RNA polymerase beta subunit CH56_3707 PF04560 RNA polymerase Rpb2, domain 7 CH56_3707 PF04561 RNA polymerase Rpb2, domain 2 CH56_3707 PF10385 RNA polymerase beta subunit external 1 domain CH56_3707 PF00562 RNA polymerase Rpb2, domain 6 CH56_3707 PF04565 RNA polymerase Rpb2, domain 3 CH56_3708 PF04997 RNA polymerase Rpb1, domain 1 CH56_3708 PF04998 RNA polymerase Rpb1, domain 5 CH56_3708 PF05000 RNA polymerase Rpb1, domain 4 CH56_3708 PF04983 RNA polymerase Rpb1, domain 3 CH56_3708 PF00623 RNA polymerase Rpb1, domain 2 CH56_3709 PF01797 Transposase IS200 like CH56_371 PF03764 Elongation factor G, domain IV CH56_371 PF14492 Elongation Factor G, domain II CH56_371 PF00009 Elongation factor Tu GTP binding domain CH56_371 PF03144 Elongation factor Tu domain 2 CH56_371 PF00679 Elongation factor G C-terminus CH56_3710 PF08501 Shikimate dehydrogenase substrate binding domain CH56_3711 PF01230 HIT domain CH56_3712 PF07233 Protein of unknown function (DUF1425) CH56_3713 PF13036 Peptidoglycan-synthase activator LpoB CH56_3713 PF08139 Prokaryotic membrane lipoprotein lipid attachment site CH56_3714 PF01636 Phosphotransferase enzyme family CH56_3715 PF00933 Glycosyl hydrolase family 3 N terminal domain CH56_3716 PF05728 Uncharacterised protein family (UPF0227) CH56_3717 PF07992 Pyridine nucleotide-disulphide oxidoreductase CH56_3719 PF00872 Transposase, Mutator family CH56_372 PF00177 Ribosomal protein S7p/S5e CH56_3720 PF07690 Major Facilitator Superfamily CH56_3721 PF01584 CheW-like domain CH56_3722 PF01584 CheW-like domain CH56_3722 PF09078 CheY binding CH56_3722 PF02895 Signal transducing histidine kinase, homodimeric domain CH56_3722 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH56_3722 PF01627 Hpt domain CH56_3723 PF00691 OmpA family CH56_3723 PF13677 Membrane MotB of proton-channel complex MotA/MotB CH56_3724 PF01618 MotA/TolQ/ExbB proton channel family CH56_3725 PF05280 Flagellar transcriptional activator (FlhC) CH56_3726 PF05247 Flagellar transcriptional activator (FlhD) CH56_3727 PF00689 Cation transporting ATPase, C-terminus CH56_3727 PF00690 Cation transporter/ATPase, N-terminus CH56_3728 PF02308 MgtC family CH56_3729 PF00672 HAMP domain CH56_3729 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CH56_3729 PF02203 Tar ligand binding domain homologue CH56_373 PF00164 Ribosomal protein S12/S23 CH56_3730 PF00672 HAMP domain CH56_3730 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CH56_3730 PF02203 Tar ligand binding domain homologue CH56_3731 PF10781 Dextransucrase DSRB CH56_3732 PF00313 'Cold-shock' DNA-binding domain CH56_3733 PF16353 Domain of unknown function(DUF4981) CH56_3733 PF02837 Glycosyl hydrolases family 2, sugar binding domain CH56_3733 PF02836 Glycosyl hydrolases family 2, TIM barrel domain CH56_3733 PF00703 Glycosyl hydrolases family 2 CH56_3733 PF02929 Beta galactosidase small chain CH56_3734 PF00550 Phosphopantetheine attachment site CH56_3734 PF00109 Beta-ketoacyl synthase, N-terminal domain CH56_3734 PF16197 Ketoacyl-synthetase C-terminal extension CH56_3734 PF00107 Zinc-binding dehydrogenase CH56_3734 PF08240 Alcohol dehydrogenase GroES-like domain CH56_3734 PF00698 Acyl transferase domain CH56_3734 PF14765 Polyketide synthase dehydratase CH56_3734 PF02801 Beta-ketoacyl synthase, C-terminal domain CH56_3734 PF08659 KR domain CH56_3735 PF10777 Inner membrane protein YlaC CH56_3736 PF01037 Lrp/AsnC ligand binding domain CH56_3736 PF13404 AsnC-type helix-turn-helix domain CH56_3738 PF14001 YdfZ protein CH56_3739 PF00328 Histidine phosphatase superfamily (branch 2) CH56_374 PF04077 DsrH like protein CH56_3741 PF01638 HxlR-like helix-turn-helix CH56_3742 PF05368 NmrA-like family CH56_3743 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CH56_3743 PF08447 PAS fold CH56_3745 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family CH56_3745 PF00356 Bacterial regulatory proteins, lacI family CH56_3746 PF00180 Isocitrate/isopropylmalate dehydrogenase CH56_3747 PF00849 RNA pseudouridylate synthase CH56_3748 PF00293 NUDIX domain CH56_375 PF02635 DsrE/DsrF-like family CH56_3750 PF04356 Protein of unknown function (DUF489) CH56_3751 PF08328 Adenylosuccinate lyase C-terminal CH56_3751 PF00206 Lyase CH56_3753 PF00072 Response regulator receiver domain CH56_3753 PF00486 Transcriptional regulatory protein, C terminal CH56_3754 PF08918 PhoQ Sensor CH56_3754 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH56_3755 PF08007 Cupin superfamily protein CH56_3756 PF07687 Peptidase dimerisation domain CH56_3756 PF01546 Peptidase family M20/M25/M40 CH56_3757 PF02146 Sir2 family CH56_3758 PF00480 ROK family CH56_3759 PF02687 FtsX-like permease family CH56_3759 PF12704 MacB-like periplasmic core domain CH56_376 PF02635 DsrE/DsrF-like family CH56_3760 PF00005 ABC transporter CH56_3761 PF02687 FtsX-like permease family CH56_3761 PF12704 MacB-like periplasmic core domain CH56_3762 PF00271 Helicase conserved C-terminal domain CH56_3762 PF00270 DEAD/DEAH box helicase CH56_3762 PF02559 CarD-like/TRCF domain CH56_3762 PF03461 TRCF domain CH56_3762 PF17757 UvrB interaction domain CH56_3763 PF05433 Glycine zipper 2TM domain CH56_3764 PF00872 Transposase, Mutator family CH56_3765 PF13953 PapC C-terminal domain CH56_3765 PF00577 Outer membrane usher protein CH56_3765 PF13954 PapC N-terminal domain CH56_377 PF08348 YheO-like PAS domain CH56_377 PF13309 HTH domain CH56_3773 PF00665 Integrase core domain CH56_3773 PF02796 Helix-turn-helix domain of resolvase CH56_3774 PF01695 IstB-like ATP binding protein CH56_3776 PF00873 AcrB/AcrD/AcrF family CH56_3777 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CH56_3777 PF00529 HlyD membrane-fusion protein of T1SS CH56_3778 PF08361 MAATS-type transcriptional repressor, C-terminal region CH56_3778 PF00440 Bacterial regulatory proteins, tetR family CH56_3779 PF02635 DsrE/DsrF-like family CH56_378 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CH56_378 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase CH56_3780 PF12795 Mechanosensitive ion channel porin domain CH56_3780 PF00924 Mechanosensitive ion channel CH56_3780 PF12794 Mechanosensitive ion channel inner membrane domain 1 CH56_3781 PF10689 Protein of unknown function (DUF2496) CH56_3783 PF04304 Protein of unknown function (DUF454) CH56_3784 PF00156 Phosphoribosyl transferase domain CH56_3785 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding CH56_3785 PF12170 DNA polymerase III tau subunit V interacting with alpha CH56_3785 PF12169 DNA polymerase III subunits gamma and tau domain III CH56_3786 PF02575 YbaB/EbfC DNA-binding family CH56_3787 PF02132 RecR protein CH56_3787 PF13662 Toprim domain CH56_3788 PF00183 Hsp90 protein CH56_3788 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH56_3789 PF05191 Adenylate kinase, active site lid CH56_379 PF04102 SlyX CH56_3790 PF00762 Ferrochelatase CH56_3791 PF00970 Oxidoreductase FAD-binding domain CH56_3791 PF00111 2Fe-2S iron-sulfur cluster binding domain CH56_3791 PF00175 Oxidoreductase NAD-binding domain CH56_3792 PF00483 Nucleotidyl transferase CH56_3793 PF16363 GDP-mannose 4,6 dehydratase CH56_3794 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family CH56_3795 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family CH56_3796 PF01370 NAD dependent epimerase/dehydratase family CH56_3798 PF00872 Transposase, Mutator family CH56_3799 PF00872 Transposase, Mutator family CH56_38 PF03652 Holliday junction resolvase CH56_380 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CH56_3800 PF04338 Protein of unknown function, DUF481 CH56_3801 PF03605 Anaerobic c4-dicarboxylate membrane transporter CH56_3802 PF03605 Anaerobic c4-dicarboxylate membrane transporter CH56_3803 PF00665 Integrase core domain CH56_3803 PF02796 Helix-turn-helix domain of resolvase CH56_3805 PF01695 IstB-like ATP binding protein CH56_3807 PF00293 NUDIX domain CH56_3808 PF01043 SecA preprotein cross-linking domain CH56_3808 PF07517 SecA DEAD-like domain CH56_3808 PF07516 SecA Wing and Scaffold domain CH56_3808 PF02810 SEC-C motif CH56_3809 PF06558 Secretion monitor precursor protein (SecM) CH56_381 PF09526 Probable metal-binding protein (DUF2387) CH56_3811 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase CH56_3812 PF00091 Tubulin/FtsZ family, GTPase domain CH56_3812 PF12327 FtsZ family, C-terminal domain CH56_3813 PF02491 SHS2 domain inserted in FTSA CH56_3814 PF08478 POTRA domain, FtsQ-type CH56_3814 PF03799 Cell division protein FtsQ CH56_3815 PF07478 D-ala D-ala ligase C-terminus CH56_3815 PF01820 D-ala D-ala ligase N-terminus CH56_3816 PF02875 Mur ligase family, glutamate ligase domain CH56_3816 PF01225 Mur ligase family, catalytic domain CH56_3816 PF08245 Mur ligase middle domain CH56_3817 PF03033 Glycosyltransferase family 28 N-terminal domain CH56_3817 PF04101 Glycosyltransferase family 28 C-terminal domain CH56_3818 PF01098 Cell cycle protein CH56_3819 PF08245 Mur ligase middle domain CH56_3819 PF02875 Mur ligase family, glutamate ligase domain CH56_382 PF00999 Sodium/hydrogen exchanger family CH56_382 PF02254 TrkA-N domain CH56_3820 PF00953 Glycosyl transferase family 4 CH56_3820 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 CH56_3821 PF01225 Mur ligase family, catalytic domain CH56_3821 PF08245 Mur ligase middle domain CH56_3821 PF02875 Mur ligase family, glutamate ligase domain CH56_3822 PF01225 Mur ligase family, catalytic domain CH56_3822 PF02875 Mur ligase family, glutamate ligase domain CH56_3822 PF08245 Mur ligase middle domain CH56_3823 PF00905 Penicillin binding protein transpeptidase domain CH56_3823 PF03717 Penicillin-binding Protein dimerisation domain CH56_3824 PF04999 Cell division protein FtsL CH56_3825 PF01795 MraW methylase family CH56_3826 PF02381 MraZ protein, putative antitoxin-like CH56_3827 PF06610 L-alanine exporter CH56_3828 PF00356 Bacterial regulatory proteins, lacI family CH56_3828 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family CH56_3829 PF01797 Transposase IS200 like CH56_383 PF02525 Flavodoxin-like fold CH56_3830 PF10369 Small subunit of acetolactate synthase CH56_3831 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CH56_3831 PF00205 Thiamine pyrophosphate enzyme, central domain CH56_3831 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CH56_3832 PF00501 AMP-binding enzyme CH56_3833 PF03466 LysR substrate binding domain CH56_3833 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH56_3835 PF01797 Transposase IS200 like CH56_3836 PF00682 HMGL-like CH56_3836 PF08502 LeuA allosteric (dimerisation) domain CH56_3837 PF00180 Isocitrate/isopropylmalate dehydrogenase CH56_3838 PF00330 Aconitase family (aconitate hydratase) CH56_3839 PF00694 Aconitase C-terminal domain CH56_384 PF00005 ABC transporter CH56_384 PF12848 ABC transporter CH56_3840 PF07690 Major Facilitator Superfamily CH56_3841 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CH56_3841 PF12793 Sugar transport-related sRNA regulator N-term CH56_3844 PF00528 Binding-protein-dependent transport system inner membrane component CH56_3845 PF00005 ABC transporter CH56_3846 PF09335 SNARE associated Golgi protein CH56_3847 PF03104 DNA polymerase family B, exonuclease domain CH56_3847 PF00136 DNA polymerase family B CH56_3848 PF00271 Helicase conserved C-terminal domain CH56_3848 PF12137 RNA polymerase recycling family C-terminal CH56_3848 PF00176 SNF2 family N-terminal domain CH56_3848 PF18339 RapA N-terminal Tudor like domain 1 CH56_3848 PF18337 RapA N-terminal Tudor like domain CH56_385 PF00535 Glycosyl transferase family 2 CH56_3852 PF00691 OmpA family CH56_3852 PF05736 OprF membrane domain CH56_3860 PF04717 Type VI secretion system, phage-baseplate injector CH56_3860 PF16671 Actin cross-linking domain CH56_3861 PF02796 Helix-turn-helix domain of resolvase CH56_3861 PF00665 Integrase core domain CH56_3863 PF01695 IstB-like ATP binding protein CH56_3864 PF01565 FAD binding domain CH56_3864 PF08031 Berberine and berberine like CH56_3867 PF07977 FabA-like domain CH56_3868 PF00109 Beta-ketoacyl synthase, N-terminal domain CH56_3868 PF02801 Beta-ketoacyl synthase, C-terminal domain CH56_387 PF02668 Taurine catabolism dioxygenase TauD, TfdA family CH56_3870 PF01154 Hydroxymethylglutaryl-coenzyme A synthase N terminal CH56_3870 PF08540 Hydroxymethylglutaryl-coenzyme A synthase C terminal CH56_3872 PF00378 Enoyl-CoA hydratase/isomerase CH56_3875 PF00550 Phosphopantetheine attachment site CH56_3876 PF00698 Acyl transferase domain CH56_388 PF00528 Binding-protein-dependent transport system inner membrane component CH56_3880 PF05736 OprF membrane domain CH56_3880 PF00691 OmpA family CH56_3882 PF07724 AAA domain (Cdc48 subfamily) CH56_3882 PF00004 ATPase family associated with various cellular activities (AAA) CH56_3882 PF10431 C-terminal, D2-small domain, of ClpB protein CH56_3882 PF17871 AAA lid domain CH56_389 PF00005 ABC transporter CH56_3899 PF12848 ABC transporter CH56_3899 PF00005 ABC transporter CH56_39 PF02622 Uncharacterized ACR, COG1678 CH56_390 PF04069 Substrate binding domain of ABC-type glycine betaine transport system CH56_3901 PF00899 ThiF family CH56_3902 PF00994 Probable molybdopterin binding domain CH56_3902 PF03453 MoeA N-terminal region (domain I and II) CH56_3902 PF03454 MoeA C-terminal region (domain IV) CH56_3904 PF00005 ABC transporter CH56_3905 PF13533 Biotin-lipoyl like CH56_3908 PF00872 Transposase, Mutator family CH56_391 PF01810 LysE type translocator CH56_3910 PF00756 Putative esterase CH56_3911 PF00107 Zinc-binding dehydrogenase CH56_3911 PF08240 Alcohol dehydrogenase GroES-like domain CH56_3912 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH56_3912 PF03466 LysR substrate binding domain CH56_3913 PF06779 Uncharacterised MFS-type transporter YbfB CH56_3915 PF01227 GTP cyclohydrolase I CH56_3916 PF04235 Protein of unknown function (DUF418) CH56_3917 PF13407 Periplasmic binding protein domain CH56_3918 PF00005 ABC transporter CH56_3919 PF02653 Branched-chain amino acid transport system / permease component CH56_392 PF00561 alpha/beta hydrolase fold CH56_3921 PF02698 DUF218 domain CH56_3922 PF00390 Malic enzyme, N-terminal domain CH56_3922 PF03949 Malic enzyme, NAD binding domain CH56_3923 PF03949 Malic enzyme, NAD binding domain CH56_3923 PF00390 Malic enzyme, N-terminal domain CH56_3924 PF08211 Cytidine and deoxycytidylate deaminase zinc-binding region CH56_3924 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region CH56_3925 PF04172 LrgB-like family CH56_3926 PF03788 LrgA family CH56_3927 PF07690 Major Facilitator Superfamily CH56_393 PF06794 Uncharacterised protein family (UPF0270) CH56_3931 PF01797 Transposase IS200 like CH56_3932 PF01197 Ribosomal protein L31 CH56_3933 PF00444 Ribosomal protein L36 CH56_3935 PF10757 Biofilm formation regulator YbaJ CH56_3936 PF05321 Haemolysin expression modulating protein CH56_3937 PF09619 Type III secretion system lipoprotein chaperone (YscW) CH56_3938 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain CH56_394 PF00485 Phosphoribulokinase / Uridine kinase family CH56_3940 PF00909 Ammonium Transporter Family CH56_3941 PF00543 Nitrogen regulatory protein P-II CH56_3942 PF00005 ABC transporter CH56_3942 PF00664 ABC transporter transmembrane region CH56_3943 PF00005 ABC transporter CH56_3943 PF00664 ABC transporter transmembrane region CH56_3944 PF01037 Lrp/AsnC ligand binding domain CH56_3944 PF13404 AsnC-type helix-turn-helix domain CH56_3945 PF00291 Pyridoxal-phosphate dependent enzyme CH56_3947 PF12793 Sugar transport-related sRNA regulator N-term CH56_3947 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CH56_3948 PF06508 Queuosine biosynthesis protein QueC CH56_3951 PF13145 PPIC-type PPIASE domain CH56_3953 PF00216 Bacterial DNA-binding protein CH56_3954 PF02190 ATP-dependent protease La (LON) substrate-binding domain CH56_3954 PF00004 ATPase family associated with various cellular activities (AAA) CH56_3954 PF05362 Lon protease (S16) C-terminal proteolytic domain CH56_3955 PF06689 ClpX C4-type zinc finger CH56_3955 PF10431 C-terminal, D2-small domain, of ClpB protein CH56_3955 PF07724 AAA domain (Cdc48 subfamily) CH56_3956 PF00574 Clp protease CH56_3957 PF05698 Bacterial trigger factor protein (TF) C-terminus CH56_3957 PF05697 Bacterial trigger factor protein (TF) CH56_3957 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CH56_3959 PF01722 BolA-like protein CH56_396 PF02566 OsmC-like protein CH56_3960 PF03923 Uncharacterized lipoprotein CH56_3960 PF08139 Prokaryotic membrane lipoprotein lipid attachment site CH56_3961 PF07690 Major Facilitator Superfamily CH56_3962 PF03502 Nucleoside-specific channel-forming protein, Tsx CH56_3963 PF06481 COX Aromatic Rich Motif CH56_3963 PF00116 Cytochrome C oxidase subunit II, periplasmic domain CH56_3964 PF00115 Cytochrome C and Quinol oxidase polypeptide I CH56_3965 PF00510 Cytochrome c oxidase subunit III CH56_3966 PF03626 Prokaryotic Cytochrome C oxidase subunit IV CH56_3967 PF01040 UbiA prenyltransferase family CH56_3968 PF01797 Transposase IS200 like CH56_3969 PF07690 Major Facilitator Superfamily CH56_397 PF00027 Cyclic nucleotide-binding domain CH56_397 PF13545 Crp-like helix-turn-helix domain CH56_3970 PF04461 Protein of unknown function (DUF520) CH56_3971 PF08546 Ketopantoate reductase PanE/ApbA C terminal CH56_3971 PF02558 Ketopantoate reductase PanE/ApbA CH56_3972 PF01965 DJ-1/PfpI family CH56_3973 PF02926 THUMP domain CH56_3973 PF02568 Thiamine biosynthesis protein (ThiI) CH56_3974 PF02609 Exonuclease VII small subunit CH56_3975 PF00348 Polyprenyl synthetase CH56_3976 PF02780 Transketolase, C-terminal domain CH56_3976 PF02779 Transketolase, pyrimidine binding domain CH56_3976 PF13292 1-deoxy-D-xylulose-5-phosphate synthase CH56_3978 PF01370 NAD dependent epimerase/dehydratase family CH56_398 PF12805 FUSC-like inner membrane protein yccS CH56_3980 PF02653 Branched-chain amino acid transport system / permease component CH56_3981 PF00005 ABC transporter CH56_3982 PF00005 ABC transporter CH56_3983 PF00465 Iron-containing alcohol dehydrogenase CH56_3985 PF13520 Amino acid permease CH56_3986 PF08411 Exonuclease C-terminal CH56_3986 PF00929 Exonuclease CH56_3988 PF04363 Protein of unknown function (DUF496) CH56_3989 PF00872 Transposase, Mutator family CH56_399 PF00202 Aminotransferase class-III CH56_3992 PF08543 Phosphomethylpyrimidine kinase CH56_3996 PF00781 Diacylglycerol kinase catalytic domain CH56_3998 PF07411 Domain of unknown function (DUF1508) CH56_3999 PF00072 Response regulator receiver domain CH56_3999 PF00486 Transcriptional regulatory protein, C terminal CH56_40 PF02951 Prokaryotic glutathione synthetase, N-terminal domain CH56_40 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain CH56_400 PF00117 Glutamine amidotransferase class-I CH56_4000 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH56_4000 PF00672 HAMP domain CH56_4000 PF00512 His Kinase A (phospho-acceptor) domain CH56_4001 PF07690 Major Facilitator Superfamily CH56_4002 PF00873 AcrB/AcrD/AcrF family CH56_4003 PF00873 AcrB/AcrD/AcrF family CH56_4004 PF13533 Biotin-lipoyl like CH56_4005 PF08402 TOBE domain CH56_4005 PF00005 ABC transporter CH56_4006 PF00392 Bacterial regulatory proteins, gntR family CH56_4006 PF00155 Aminotransferase class I and II CH56_4007 PF00202 Aminotransferase class-III CH56_4009 PF00528 Binding-protein-dependent transport system inner membrane component CH56_401 PF05872 Bacterial protein of unknown function (DUF853) CH56_4010 PF00528 Binding-protein-dependent transport system inner membrane component CH56_4011 PF00012 Hsp70 protein CH56_4012 PF01769 Divalent cation transporter CH56_4012 PF00571 CBS domain CH56_4012 PF03448 MgtE intracellular N domain CH56_4013 PF02541 Ppx/GppA phosphatase family CH56_4014 PF13089 Polyphosphate kinase N-terminal domain CH56_4014 PF13090 Polyphosphate kinase C-terminal domain 2 CH56_4014 PF17941 Polyphosphate kinase C-terminal domain 1 CH56_4014 PF02503 Polyphosphate kinase middle domain CH56_4015 PF00528 Binding-protein-dependent transport system inner membrane component CH56_4016 PF00528 Binding-protein-dependent transport system inner membrane component CH56_4017 PF00005 ABC transporter CH56_402 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD CH56_4020 PF13302 Acetyltransferase (GNAT) domain CH56_4021 PF00551 Formyl transferase CH56_4022 PF02769 AIR synthase related protein, C-terminal domain CH56_4022 PF00586 AIR synthase related protein, N-terminal domain CH56_4024 PF13276 HTH-like domain CH56_4024 PF00665 Integrase core domain CH56_4024 PF13333 Integrase core domain CH56_4026 PF01797 Transposase IS200 like CH56_4027 PF00308 Bacterial dnaA protein CH56_4028 PF03960 ArsC family CH56_4029 PF01435 Peptidase family M48 CH56_4029 PF07720 Tetratricopeptide repeat CH56_403 PF02056 Family 4 glycosyl hydrolase CH56_403 PF11975 Family 4 glycosyl hydrolase C-terminal domain CH56_4030 PF01594 AI-2E family transporter CH56_4033 PF00578 AhpC/TSA family CH56_4034 PF01842 ACT domain CH56_4035 PF00701 Dihydrodipicolinate synthetase family CH56_4036 PF06804 NlpB/DapX lipoprotein CH56_4038 PF01259 SAICAR synthetase CH56_4039 PF04228 Putative neutral zinc metallopeptidase CH56_404 PF00356 Bacterial regulatory proteins, lacI family CH56_4040 PF04284 Protein of unknown function (DUF441) CH56_4041 PF05127 Helicase CH56_4041 PF17176 tRNA-binding domain CH56_4041 PF13718 GNAT acetyltransferase 2 CH56_4041 PF08351 Domain of unknown function (DUF1726) CH56_4042 PF13980 Uncharacterised protein family (UPF0370) CH56_4043 PF02557 D-alanyl-D-alanine carboxypeptidase CH56_4044 PF01546 Peptidase family M20/M25/M40 CH56_4044 PF07687 Peptidase dimerisation domain CH56_4045 PF03960 ArsC family CH56_4048 PF00528 Binding-protein-dependent transport system inner membrane component CH56_4049 PF00005 ABC transporter CH56_4049 PF08402 TOBE domain CH56_4050 PF00884 Sulfatase CH56_4051 PF13186 Iron-sulfur cluster-binding domain CH56_4051 PF04055 Radical SAM superfamily CH56_4052 PF04307 LexA-binding, inner membrane-associated putative hydrolase CH56_4054 PF01695 IstB-like ATP binding protein CH56_4055 PF00665 Integrase core domain CH56_4055 PF02796 Helix-turn-helix domain of resolvase CH56_4056 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain CH56_4056 PF01367 5'-3' exonuclease, C-terminal SAM fold CH56_4057 PF11892 Domain of unknown function (DUF3412) CH56_4057 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases CH56_4057 PF03641 Possible lysine decarboxylase CH56_4058 PF14489 QueF-like protein CH56_4058 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term CH56_4059 PF07348 Syd protein (SUKH-2) CH56_406 PF07690 Major Facilitator Superfamily CH56_4063 PF03477 ATP cone domain CH56_4064 PF01872 RibD C-terminal domain CH56_4064 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region CH56_4065 PF00885 6,7-dimethyl-8-ribityllumazine synthase CH56_4066 PF01029 NusB family CH56_4067 PF00586 AIR synthase related protein, N-terminal domain CH56_4067 PF02769 AIR synthase related protein, C-terminal domain CH56_4068 PF04608 Phosphatidylglycerophosphatase A CH56_407 PF07969 Amidohydrolase family CH56_4071 PF01634 ATP phosphoribosyltransferase CH56_4071 PF08029 HisG, C-terminal domain CH56_4072 PF00815 Histidinol dehydrogenase CH56_4073 PF00155 Aminotransferase class I and II CH56_4074 PF00475 Imidazoleglycerol-phosphate dehydratase CH56_4075 PF00117 Glutamine amidotransferase class-I CH56_4076 PF00977 Histidine biosynthesis protein CH56_4077 PF00977 Histidine biosynthesis protein CH56_4078 PF00977 Histidine biosynthesis protein CH56_4079 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase CH56_4079 PF01502 Phosphoribosyl-AMP cyclohydrolase CH56_408 PF18267 Rubredoxin NAD+ reductase C-terminal domain CH56_408 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain CH56_408 PF07992 Pyridine nucleotide-disulphide oxidoreductase CH56_408 PF01077 Nitrite and sulphite reductase 4Fe-4S domain CH56_408 PF04324 BFD-like [2Fe-2S] binding domain CH56_4080 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain CH56_4080 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase CH56_4081 PF00483 Nucleotidyl transferase CH56_4082 PF00483 Nucleotidyl transferase CH56_4084 PF06276 Ferric iron reductase FhuF-like transporter CH56_4084 PF04183 IucA / IucC family CH56_4085 PF07715 TonB-dependent Receptor Plug Domain CH56_4085 PF00593 TonB dependent receptor CH56_4085 PF07660 Secretin and TonB N terminus short domain CH56_4086 PF01497 Periplasmic binding protein CH56_4087 PF01032 FecCD transport family CH56_4088 PF01032 FecCD transport family CH56_4089 PF00005 ABC transporter CH56_409 PF04324 BFD-like [2Fe-2S] binding domain CH56_409 PF18267 Rubredoxin NAD+ reductase C-terminal domain CH56_409 PF07992 Pyridine nucleotide-disulphide oxidoreductase CH56_409 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain CH56_409 PF01077 Nitrite and sulphite reductase 4Fe-4S domain CH56_4090 PF04183 IucA / IucC family CH56_4090 PF06276 Ferric iron reductase FhuF-like transporter CH56_4092 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) CH56_4093 PF00282 Pyridoxal-dependent decarboxylase conserved domain CH56_4094 PF06276 Ferric iron reductase FhuF-like transporter CH56_4094 PF11575 FhuF 2Fe-2S C-terminal domain CH56_4095 PF00571 CBS domain CH56_4095 PF03471 Transporter associated domain CH56_4095 PF03741 Integral membrane protein TerC family CH56_4096 PF05170 AsmA family CH56_4097 PF00692 dUTPase CH56_4098 PF00485 Phosphoribulokinase / Uridine kinase family CH56_4099 PF10609 NUBPL iron-transfer P-loop NTPase CH56_41 PF04452 RNA methyltransferase CH56_410 PF13806 Rieske-like [2Fe-2S] domain CH56_4100 PF09334 tRNA synthetases class I (M) CH56_4100 PF01588 Putative tRNA binding domain CH56_4102 PF00691 OmpA family CH56_4102 PF01389 OmpA-like transmembrane domain CH56_4103 PF03846 Cell division inhibitor SulA CH56_4104 PF04994 TfoX C-terminal domain CH56_4104 PF04993 TfoX N-terminal domain CH56_4105 PF12805 FUSC-like inner membrane protein yccS CH56_4106 PF03733 Inner membrane component domain CH56_4107 PF13361 UvrD-like helicase C-terminal domain CH56_4107 PF00580 UvrD/REP helicase N-terminal domain CH56_4107 PF12462 DNA helicase IV / RNA helicase N terminal CH56_4108 PF02142 MGS-like domain CH56_4109 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) CH56_411 PF01226 Formate/nitrite transporter CH56_4110 PF13380 CoA binding domain CH56_4111 PF08755 Hemimethylated DNA-binding protein YccV like CH56_4112 PF17785 PUA-like domain CH56_4112 PF10672 S-adenosylmethionine-dependent methyltransferase CH56_4113 PF00708 Acylphosphatase CH56_4114 PF04358 DsrC like protein CH56_4116 PF13610 DDE domain CH56_412 PF14824 Sirohaem biosynthesis protein central CH56_412 PF10414 Sirohaem synthase dimerisation region CH56_412 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CH56_4120 PF02796 Helix-turn-helix domain of resolvase CH56_4120 PF00665 Integrase core domain CH56_4122 PF01695 IstB-like ATP binding protein CH56_4123 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain CH56_4123 PF01367 5'-3' exonuclease, C-terminal SAM fold CH56_4124 PF01728 FtsJ-like methyltransferase CH56_4124 PF18125 RlmM ferredoxin-like domain CH56_4125 PF04241 Protein of unknown function (DUF423) CH56_4126 PF03466 LysR substrate binding domain CH56_4126 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH56_4128 PF00266 Aminotransferase class-V CH56_4129 PF02657 Fe-S metabolism associated domain CH56_413 PF00579 tRNA synthetases class I (W and Y) CH56_4130 PF00899 ThiF family CH56_4131 PF03562 MltA specific insert domain CH56_4131 PF06725 3D domain CH56_4134 PF01520 N-acetylmuramoyl-L-alanine amidase CH56_4134 PF11741 AMIN domain CH56_4135 PF00696 Amino acid kinase family CH56_4135 PF00583 Acetyltransferase (GNAT) family CH56_4136 PF13538 UvrD-like helicase C-terminal domain CH56_4137 PF13361 UvrD-like helicase C-terminal domain CH56_4137 PF12705 PD-(D/E)XK nuclease superfamily CH56_4137 PF00580 UvrD/REP helicase N-terminal domain CH56_4138 PF16187 Middle or third domain of peptidase_M16 CH56_4138 PF05193 Peptidase M16 inactive domain CH56_4138 PF00675 Insulinase (Peptidase family M16) CH56_4139 PF17946 RecC C-terminal domain CH56_414 PF13419 Haloacid dehalogenase-like hydrolase CH56_4145 PF00303 Thymidylate synthase CH56_4146 PF01790 Prolipoprotein diacylglyceryl transferase CH56_4147 PF00391 PEP-utilising enzyme, mobile domain CH56_4147 PF01590 GAF domain CH56_4147 PF02896 PEP-utilising enzyme, TIM barrel domain CH56_4147 PF05524 PEP-utilising enzyme, N-terminal CH56_4148 PF00293 NUDIX domain CH56_4149 PF02976 DNA mismatch repair enzyme MutH CH56_415 PF00834 Ribulose-phosphate 3 epimerase family CH56_4150 PF00248 Aldo/keto reductase family CH56_4153 PF07690 Major Facilitator Superfamily CH56_4154 PF00501 AMP-binding enzyme CH56_4154 PF13193 AMP-binding enzyme C-terminal domain CH56_4154 PF01553 Acyltransferase CH56_4155 PF00384 Molybdopterin oxidoreductase CH56_4155 PF01568 Molydopterin dinucleotide binding domain CH56_4156 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain CH56_4156 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain CH56_4157 PF00356 Bacterial regulatory proteins, lacI family CH56_4158 PF07690 Major Facilitator Superfamily CH56_4159 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH56_4159 PF03466 LysR substrate binding domain CH56_416 PF02086 D12 class N6 adenine-specific DNA methyltransferase CH56_4160 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH56_4160 PF03466 LysR substrate binding domain CH56_4162 PF00672 HAMP domain CH56_4162 PF02203 Tar ligand binding domain homologue CH56_4162 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CH56_4166 PF06750 Bacterial Peptidase A24 N-terminal domain CH56_4166 PF01478 Type IV leader peptidase family CH56_417 PF05036 Sporulation related domain CH56_4174 PF07963 Prokaryotic N-terminal methylation motif CH56_4174 PF08334 Type II secretion system (T2SS), protein G CH56_4175 PF00482 Type II secretion system (T2SS), protein F CH56_4177 PF00263 Bacterial type II and III secretion system protein CH56_4177 PF03958 Bacterial type II/III secretion system short domain CH56_418 PF01761 3-dehydroquinate synthase CH56_4180 PF00484 Carbonic anhydrase CH56_4184 PF09092 Lyase, N terminal CH56_4184 PF09093 Lyase, catalytic CH56_4184 PF02278 Polysaccharide lyase family 8, super-sandwich domain CH56_4184 PF02884 Polysaccharide lyase family 8, C-terminal beta-sandwich domain CH56_4185 PF01695 IstB-like ATP binding protein CH56_4186 PF00665 Integrase core domain CH56_4186 PF02796 Helix-turn-helix domain of resolvase CH56_4187 PF00128 Alpha amylase, catalytic domain CH56_4187 PF02903 Alpha amylase, N-terminal ig-like domain CH56_4188 PF00324 Amino acid permease CH56_4189 PF05525 Branched-chain amino acid transport protein CH56_419 PF01202 Shikimate kinase CH56_4190 PF12849 PBP superfamily domain CH56_4191 PF00512 His Kinase A (phospho-acceptor) domain CH56_4191 PF00989 PAS fold CH56_4191 PF11808 Phosphate regulon sensor protein PhoR CH56_4191 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH56_4192 PF00486 Transcriptional regulatory protein, C terminal CH56_4192 PF00072 Response regulator receiver domain CH56_4193 PF12320 Type 5 capsule protein repressor C-terminal domain CH56_4193 PF00149 Calcineurin-like phosphoesterase CH56_4194 PF13476 AAA domain CH56_4195 PF00480 ROK family CH56_4196 PF04381 Putative exonuclease, RdgC CH56_4197 PF06865 Pyrimidine/purine nucleoside phosphorylase CH56_4198 PF01202 Shikimate kinase CH56_42 PF04231 Endonuclease I CH56_420 PF00263 Bacterial type II and III secretion system protein CH56_420 PF03958 Bacterial type II/III secretion system short domain CH56_4200 PF08241 Methyltransferase domain CH56_4202 PF07238 PilZ domain CH56_4202 PF07317 Flagellar regulator YcgR CH56_4203 PF00171 Aldehyde dehydrogenase family CH56_4204 PF01472 PUA domain CH56_4204 PF00696 Amino acid kinase family CH56_4205 PF07417 Sigma factor-binding transcriptional regulator Crl CH56_4215 PF07484 Phage Tail Collar Domain CH56_4215 PF03335 Phage tail fibre repeat CH56_4215 PF07484 Phage Tail Collar Domain CH56_4215 PF08400 Prophage tail fibre N-terminal CH56_4215 PF08400 Prophage tail fibre N-terminal CH56_4215 PF03335 Phage tail fibre repeat CH56_4216 PF02413 Caudovirales tail fibre assembly protein, lambda gpK CH56_4217 PF01695 IstB-like ATP binding protein CH56_4218 PF00665 Integrase core domain CH56_4218 PF02796 Helix-turn-helix domain of resolvase CH56_4226 PF02811 PHP domain CH56_4226 PF14579 Helix-hairpin-helix motif CH56_4226 PF17657 Bacterial DNA polymerase III alpha subunit finger domain CH56_4226 PF07733 Bacterial DNA polymerase III alpha NTPase domain CH56_4228 PF11775 Cobalamin biosynthesis protein CobT VWA domain CH56_4228 PF06213 Cobalamin biosynthesis protein CobT CH56_4232 PF00872 Transposase, Mutator family CH56_4233 PF01548 Transposase CH56_4233 PF02371 Transposase IS116/IS110/IS902 family CH56_4234 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) CH56_4236 PF13091 PLD-like domain CH56_4238 PF04754 Putative transposase, YhgA-like CH56_4239 PF00239 Resolvase, N terminal domain CH56_4239 PF02796 Helix-turn-helix domain of resolvase CH56_4242 PF13614 AAA domain CH56_4242 PF18607 ParA helix turn helix domain CH56_4243 PF08775 ParB family CH56_4243 PF02195 ParB-like nuclease domain CH56_4246 PF01555 DNA methylase CH56_4248 PF07128 Protein of unknown function (DUF1380) CH56_425 PF17092 Penicillin-binding protein OB-like domain CH56_425 PF00905 Penicillin binding protein transpeptidase domain CH56_425 PF00912 Transglycosylase CH56_4252 PF06006 Bacterial protein of unknown function (DUF905) CH56_4253 PF02195 ParB-like nuclease domain CH56_4254 PF00665 Integrase core domain CH56_4254 PF02796 Helix-turn-helix domain of resolvase CH56_4255 PF01695 IstB-like ATP binding protein CH56_4256 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain CH56_4256 PF01367 5'-3' exonuclease, C-terminal SAM fold CH56_4258 PF00154 recA bacterial DNA recombination protein CH56_4259 PF03477 ATP cone domain CH56_4259 PF02867 Ribonucleotide reductase, barrel domain CH56_4259 PF00317 Ribonucleotide reductase, all-alpha domain CH56_426 PF00293 NUDIX domain CH56_4269 PF01051 Initiator Replication protein CH56_4276 PF00317 Ribonucleotide reductase, all-alpha domain CH56_4276 PF03477 ATP cone domain CH56_4276 PF02867 Ribonucleotide reductase, barrel domain CH56_4277 PF00268 Ribonucleotide reductase, small chain CH56_428 PF07095 Intracellular growth attenuator protein IgaA CH56_4288 PF00270 DEAD/DEAH box helicase CH56_4288 PF00271 Helicase conserved C-terminal domain CH56_4288 PF17191 RecG wedge domain CH56_4289 PF02195 ParB-like nuclease domain CH56_4289 PF17762 HTH domain found in ParB protein CH56_429 PF13419 Haloacid dehalogenase-like hydrolase CH56_4290 PF17762 HTH domain found in ParB protein CH56_4290 PF02195 ParB-like nuclease domain CH56_4291 PF03412 Peptidase C39 family CH56_4291 PF00005 ABC transporter CH56_4291 PF00664 ABC transporter transmembrane region CH56_43 PF10263 SprT-like family CH56_43 PF17283 SprT-like zinc ribbon domain CH56_430 PF01479 S4 domain CH56_4307 PF02796 Helix-turn-helix domain of resolvase CH56_4307 PF00239 Resolvase, N terminal domain CH56_4309 PF01526 Tn3 transposase DDE domain CH56_4309 PF13700 Domain of unknown function (DUF4158) CH56_431 PF01430 Hsp33 protein CH56_4310 PF05658 Head domain of trimeric autotransporter adhesin CH56_4310 PF05662 Coiled stalk of trimeric autotransporter adhesin CH56_4310 PF03895 YadA-like membrane anchor domain CH56_4312 PF05662 Coiled stalk of trimeric autotransporter adhesin CH56_4312 PF05658 Head domain of trimeric autotransporter adhesin CH56_4312 PF03895 YadA-like membrane anchor domain CH56_4318 PF10723 Replication regulatory protein RepB CH56_4319 PF02387 IncFII RepA protein family CH56_432 PF01293 Phosphoenolpyruvate carboxykinase CH56_4326 PF09632 Rac1-binding domain CH56_4326 PF00069 Protein kinase domain CH56_4328 PF13276 HTH-like domain CH56_4328 PF13683 Integrase core domain CH56_4329 PF09013 YopH, N-terminal CH56_4329 PF00102 Protein-tyrosine phosphatase CH56_433 PF00512 His Kinase A (phospho-acceptor) domain CH56_433 PF00672 HAMP domain CH56_433 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH56_4330 PF13276 HTH-like domain CH56_4330 PF13683 Integrase core domain CH56_4332 PF01527 Transposase CH56_4333 PF09013 YopH, N-terminal CH56_4334 PF02108 Flagellar assembly protein FliH CH56_4335 PF06578 YOP proteins translocation protein K (YscK) CH56_4336 PF01514 Secretory protein of YscJ/FliF family CH56_4337 PF17001 Type III secretion basal body protein I, YscI, HrpB, PscI CH56_4338 PF09025 YopR, type III needle-polymerisation regulator CH56_4339 PF09477 Bacterial type II secretion system chaperone protein (type_III_yscG) CH56_434 PF00072 Response regulator receiver domain CH56_434 PF00486 Transcriptional regulatory protein, C terminal CH56_4340 PF09392 Type III secretion needle MxiH, YscF, SsaG, EprI, PscF, EscF CH56_4341 PF08988 Type III secretion system, cytoplasmic E component of needle CH56_4342 PF16693 Inner membrane component of T3SS, periplasmic domain CH56_4342 PF16697 Inner membrane component of T3SS, cytoplasmic domain CH56_4344 PF05932 Tir chaperone protein (CesT) family CH56_4345 PF02311 AraC-like ligand binding domain CH56_4345 PF12833 Helix-turn-helix domain CH56_4347 PF01312 FlhB HrpN YscU SpaS Family CH56_4348 PF01311 Bacterial export proteins, family 1 CH56_4349 PF01313 Bacterial export proteins, family 3 CH56_435 PF01272 Transcription elongation factor, GreA/GreB, C-term CH56_435 PF03449 Transcription elongation factor, N-terminal CH56_4350 PF00813 FliP family CH56_4351 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term CH56_4352 PF02120 Flagellar hook-length control protein FliK CH56_4353 PF07321 Type III secretion protein YscO CH56_4354 PF18269 T3SS EscN ATPase C-terminal domain CH56_4354 PF02874 ATP synthase alpha/beta family, beta-barrel domain CH56_4354 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CH56_4355 PF07201 HrpJ-like domain CH56_4356 PF09059 TyeA CH56_4358 PF09474 Type III secretion system YscX (type_III_YscX) CH56_436 PF17674 HHH domain CH56_436 PF00575 S1 RNA binding domain CH56_436 PF09371 Tex-like protein N-terminal domain CH56_436 PF16921 Tex protein YqgF-like domain CH56_4360 PF00771 FHIPEP family CH56_4361 PF09621 Type III secretion system regulator (LcrR) CH56_4362 PF07216 LcrG protein CH56_4363 PF04792 V antigen (LcrV) protein CH56_4364 PF07720 Tetratricopeptide repeat CH56_4365 PF04888 Secretion system effector C (SseC) like family CH56_4366 PF05844 YopD protein CH56_4368 PF12468 Type III secretion system leucine rich repeat protein CH56_4368 PF12468 Type III secretion system leucine rich repeat protein CH56_437 PF04023 FeoA domain CH56_4372 PF05932 Tir chaperone protein (CesT) family CH56_4373 PF03543 Yersinia/Haemophilus virulence surface antigen CH56_4375 PF05818 Enterobacterial TraT complement resistance protein CH56_4377 PF00665 Integrase core domain CH56_4377 PF13276 HTH-like domain CH56_4377 PF13333 Integrase core domain CH56_4379 PF13614 AAA domain CH56_438 PF07664 Ferrous iron transport protein B C terminus CH56_438 PF17910 FeoB cytosolic helical domain CH56_438 PF02421 Ferrous iron transport protein B CH56_438 PF07670 Nucleoside recognition CH56_4380 PF18090 Centromere-binding protein HTH domain CH56_4380 PF02195 ParB-like nuclease domain CH56_4382 PF03693 Bacterial antitoxin of ParD toxin-antitoxin type II system and RHH CH56_4384 PF09020 YopE, N terminal CH56_4384 PF03545 Yersinia virulence determinant (YopE) CH56_4385 PF05932 Tir chaperone protein (CesT) family CH56_4386 PF13276 HTH-like domain CH56_4386 PF13683 Integrase core domain CH56_4388 PF00665 Integrase core domain CH56_4389 PF01695 IstB-like ATP binding protein CH56_439 PF09012 FeoC like transcriptional regulator CH56_4391 PF13276 HTH-like domain CH56_4391 PF13683 Integrase core domain CH56_4392 PF01527 Transposase CH56_4395 PF01278 Omptin family CH56_4397 PF05973 Phage derived protein Gp49-like (DUF891) CH56_4398 PF02796 Helix-turn-helix domain of resolvase CH56_4398 PF00665 Integrase core domain CH56_4399 PF01815 Rop protein CH56_44 PF00438 S-adenosylmethionine synthetase, N-terminal domain CH56_44 PF02772 S-adenosylmethionine synthetase, central domain CH56_44 PF02773 S-adenosylmethionine synthetase, C-terminal domain CH56_440 PF07338 Protein of unknown function (DUF1471) CH56_441 PF00561 alpha/beta hydrolase fold CH56_442 PF00156 Phosphoribosyl transferase domain CH56_443 PF01106 NifU-like domain CH56_443 PF01521 Iron-sulphur cluster biosynthesis CH56_444 PF02446 4-alpha-glucanotransferase CH56_445 PF00343 Carbohydrate phosphorylase CH56_446 PF00343 Carbohydrate phosphorylase CH56_447 PF17874 MalT-like TPR region CH56_447 PF00196 Bacterial regulatory proteins, luxR family CH56_448 PF00196 Bacterial regulatory proteins, luxR family CH56_448 PF17874 MalT-like TPR region CH56_449 PF00581 Rhodanese-like domain CH56_450 PF01694 Rhomboid family CH56_450 PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease CH56_451 PF08220 DeoR-like helix-turn-helix domain CH56_451 PF00455 DeoR C terminal sensor domain CH56_453 PF13333 Integrase core domain CH56_453 PF00665 Integrase core domain CH56_453 PF13276 HTH-like domain CH56_454 PF07690 Major Facilitator Superfamily CH56_459 PF13700 Domain of unknown function (DUF4158) CH56_459 PF01526 Tn3 transposase DDE domain CH56_46 PF17810 Arginine decarboxylase helical bundle domain CH56_46 PF17944 Arginine decarboxylase C-terminal helical extension CH56_46 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain CH56_460 PF00009 Elongation factor Tu GTP binding domain CH56_460 PF09106 Elongation factor SelB, winged helix CH56_460 PF09107 Elongation factor SelB, winged helix CH56_460 PF03144 Elongation factor Tu domain 2 CH56_461 PF09106 Elongation factor SelB, winged helix CH56_461 PF09107 Elongation factor SelB, winged helix CH56_461 PF03144 Elongation factor Tu domain 2 CH56_461 PF00009 Elongation factor Tu GTP binding domain CH56_462 PF12390 Selenocysteine synthase N terminal CH56_462 PF03841 L-seryl-tRNA selenium transferase CH56_463 PF04216 Protein involved in formate dehydrogenase formation CH56_464 PF01292 Prokaryotic cytochrome b561 CH56_465 PF13247 4Fe-4S dicluster domain CH56_465 PF09163 Formate dehydrogenase N, transmembrane CH56_466 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CH56_466 PF00384 Molybdopterin oxidoreductase CH56_466 PF01568 Molydopterin dinucleotide binding domain CH56_467 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CH56_467 PF00384 Molybdopterin oxidoreductase CH56_467 PF01568 Molydopterin dinucleotide binding domain CH56_468 PF02634 FdhD/NarQ family CH56_469 PF02777 Iron/manganese superoxide dismutases, C-terminal domain CH56_469 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain CH56_47 PF00355 Rieske [2Fe-2S] domain CH56_470 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CH56_470 PF00672 HAMP domain CH56_470 PF02203 Tar ligand binding domain homologue CH56_474 PF10928 Protein of unknown function (DUF2810) CH56_476 PF05068 Mannitol repressor CH56_477 PF08125 Mannitol dehydrogenase C-terminal domain CH56_477 PF01232 Mannitol dehydrogenase Rossmann domain CH56_478 PF02378 Phosphotransferase system, EIIC CH56_478 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit CH56_478 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 CH56_479 PF11254 Protein of unknown function (DUF3053) CH56_48 PF01435 Peptidase family M48 CH56_480 PF05746 DALR anticodon binding domain CH56_480 PF02092 Glycyl-tRNA synthetase beta subunit CH56_481 PF02091 Glycyl-tRNA synthetase alpha subunit CH56_483 PF03352 Methyladenine glycosylase CH56_485 PF13488 Glycine zipper CH56_485 PF00691 OmpA family CH56_487 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CH56_487 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CH56_488 PF00128 Alpha amylase, catalytic domain CH56_49 PF00456 Transketolase, thiamine diphosphate binding domain CH56_49 PF02780 Transketolase, C-terminal domain CH56_49 PF02779 Transketolase, pyrimidine binding domain CH56_490 PF00155 Aminotransferase class I and II CH56_491 PF06826 Predicted Permease Membrane Region CH56_491 PF02080 TrkA-C domain CH56_492 PF00011 Hsp20/alpha crystallin family CH56_493 PF00011 Hsp20/alpha crystallin family CH56_494 PF07119 Protein of unknown function (DUF1375) CH56_495 PF12566 Protein of unknown function (DUF3748) CH56_495 PF07676 WD40-like Beta Propeller Repeat CH56_496 PF07676 WD40-like Beta Propeller Repeat CH56_496 PF12566 Protein of unknown function (DUF3748) CH56_497 PF13291 ACT domain CH56_497 PF00291 Pyridoxal-phosphate dependent enzyme CH56_498 PF02423 Ornithine cyclodeaminase/mu-crystallin family CH56_499 PF00665 Integrase core domain CH56_499 PF02796 Helix-turn-helix domain of resolvase CH56_5 PF01546 Peptidase family M20/M25/M40 CH56_5 PF07687 Peptidase dimerisation domain CH56_50 PF01797 Transposase IS200 like CH56_500 PF01695 IstB-like ATP binding protein CH56_503 PF13276 HTH-like domain CH56_503 PF00665 Integrase core domain CH56_503 PF13333 Integrase core domain CH56_504 PF02219 Methylenetetrahydrofolate reductase CH56_505 PF00742 Homoserine dehydrogenase CH56_505 PF03447 Homoserine dehydrogenase, NAD binding domain CH56_505 PF00696 Amino acid kinase family CH56_506 PF01053 Cys/Met metabolism PLP-dependent enzyme CH56_507 PF01340 Met Apo-repressor, MetJ CH56_508 PF05360 yiaA/B two helix domain CH56_51 PF02378 Phosphotransferase system, EIIC CH56_51 PF00367 phosphotransferase system, EIIB CH56_510 PF01197 Ribosomal protein L31 CH56_511 PF18319 PriA DNA helicase Cys-rich region (CRR) domain CH56_511 PF18074 Primosomal protein N C-terminal domain CH56_511 PF17764 3′ DNA-binding domain (3′BD) CH56_511 PF00270 DEAD/DEAH box helicase CH56_511 PF00271 Helicase conserved C-terminal domain CH56_513 PF00356 Bacterial regulatory proteins, lacI family CH56_515 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain CH56_515 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain CH56_516 PF00162 Phosphoglycerate kinase CH56_517 PF01116 Fructose-bisphosphate aldolase class-II CH56_518 PF00924 Mechanosensitive ion channel CH56_518 PF05552 Conserved TM helix CH56_519 PF01810 LysE type translocator CH56_52 PF02264 LamB porin CH56_520 PF04402 Protein of unknown function (DUF541) CH56_521 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH56_521 PF03466 LysR substrate binding domain CH56_522 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) CH56_523 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CH56_523 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CH56_523 PF01842 ACT domain CH56_524 PF01812 5-formyltetrahydrofolate cyclo-ligase family CH56_525 PF05164 Cell division protein ZapA CH56_526 PF03695 Uncharacterised protein family (UPF0149) CH56_527 PF00557 Metallopeptidase family M24 CH56_527 PF05195 Aminopeptidase P, N-terminal domain CH56_528 PF01494 FAD binding domain CH56_529 PF01494 FAD binding domain CH56_53 PF00356 Bacterial regulatory proteins, lacI family CH56_530 PF08669 Glycine cleavage T-protein C-terminal barrel domain CH56_530 PF01571 Aminomethyltransferase folate-binding domain CH56_531 PF01597 Glycine cleavage H-protein CH56_532 PF02347 Glycine cleavage system P-protein CH56_535 PF05662 Coiled stalk of trimeric autotransporter adhesin CH56_535 PF05658 Head domain of trimeric autotransporter adhesin CH56_535 PF13018 Extended Signal Peptide of Type V secretion system CH56_535 PF03895 YadA-like membrane anchor domain CH56_538 PF03006 Haemolysin-III related CH56_54 PF01797 Transposase IS200 like CH56_540 PF01571 Aminomethyltransferase folate-binding domain CH56_541 PF03937 Flavinator of succinate dehydrogenase CH56_542 PF00486 Transcriptional regulatory protein, C terminal CH56_542 PF00072 Response regulator receiver domain CH56_543 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH56_543 PF00512 His Kinase A (phospho-acceptor) domain CH56_543 PF00672 HAMP domain CH56_544 PF06123 Inner membrane protein CreD CH56_545 PF00258 Flavodoxin CH56_546 PF02899 Phage integrase, N-terminal SAM-like domain CH56_546 PF00589 Phage integrase family CH56_547 PF13098 Thioredoxin-like domain CH56_547 PF10411 Disulfide bond isomerase protein N-terminus CH56_548 PF01368 DHH family CH56_548 PF02272 DHHA1 domain CH56_548 PF17768 RecJ OB domain CH56_549 PF03462 PCRF domain CH56_549 PF00472 RF-1 domain CH56_55 PF13802 Galactose mutarotase-like CH56_55 PF17137 Domain of unknown function (DUF5110) CH56_55 PF16338 Domain of unknown function (DUF4968) CH56_55 PF01055 Glycosyl hydrolases family 31 CH56_550 PF00152 tRNA synthetases class II (D, K and N) CH56_550 PF01336 OB-fold nucleic acid binding domain CH56_552 PF00589 Phage integrase family CH56_552 PF14659 Phage integrase, N-terminal SAM-like domain CH56_552 PF13356 Arm DNA-binding domain CH56_556 PF15723 Motility quorum-sensing regulator, toxin of MqsA CH56_557 PF15731 Antitoxin component of bacterial toxin-antitoxin system, MqsA CH56_56 PF07690 Major Facilitator Superfamily CH56_57 PF00356 Bacterial regulatory proteins, lacI family CH56_574 PF03551 Transcriptional regulator PadR-like family CH56_575 PF05708 Permuted papain-like amidase enzyme, YaeF/YiiX, C92 family CH56_576 PF13407 Periplasmic binding protein domain CH56_577 PF02653 Branched-chain amino acid transport system / permease component CH56_578 PF00005 ABC transporter CH56_579 PF00005 ABC transporter CH56_579 PF17912 MalK OB fold domain CH56_580 PF13416 Bacterial extracellular solute-binding protein CH56_581 PF00528 Binding-protein-dependent transport system inner membrane component CH56_582 PF00528 Binding-protein-dependent transport system inner membrane component CH56_583 PF07745 Glycosyl hydrolase family 53 CH56_584 PF08532 Beta-galactosidase trimerisation domain CH56_584 PF08533 Beta-galactosidase C-terminal domain CH56_584 PF02449 Beta-galactosidase CH56_585 PF02449 Beta-galactosidase CH56_585 PF08532 Beta-galactosidase trimerisation domain CH56_585 PF08533 Beta-galactosidase C-terminal domain CH56_587 PF07992 Pyridine nucleotide-disulphide oxidoreductase CH56_587 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CH56_588 PF03544 Gram-negative bacterial TonB protein C-terminal CH56_589 PF00529 HlyD membrane-fusion protein of T1SS CH56_590 PF00005 ABC transporter CH56_590 PF00664 ABC transporter transmembrane region CH56_592 PF07715 TonB-dependent Receptor Plug Domain CH56_592 PF00593 TonB dependent receptor CH56_594 PF00206 Lyase CH56_594 PF14698 Argininosuccinate lyase C-terminal CH56_595 PF00696 Amino acid kinase family CH56_596 PF01118 Semialdehyde dehydrogenase, NAD binding domain CH56_596 PF02774 Semialdehyde dehydrogenase, dimerisation domain CH56_597 PF07687 Peptidase dimerisation domain CH56_597 PF01546 Peptidase family M20/M25/M40 CH56_598 PF00311 Phosphoenolpyruvate carboxylase CH56_6 PF00817 impB/mucB/samB family CH56_6 PF11799 impB/mucB/samB family C-terminal domain CH56_6 PF11798 IMS family HHH motif CH56_60 PF01116 Fructose-bisphosphate aldolase class-II CH56_601 PF13333 Integrase core domain CH56_601 PF13276 HTH-like domain CH56_601 PF00665 Integrase core domain CH56_605 PF05638 Type VI secretion system effector, Hcp CH56_607 PF07148 Maltose operon periplasmic protein precursor (MalM) CH56_608 PF02264 LamB porin CH56_609 PF17912 MalK OB fold domain CH56_609 PF00005 ABC transporter CH56_611 PF01547 Bacterial extracellular solute-binding protein CH56_612 PF00528 Binding-protein-dependent transport system inner membrane component CH56_612 PF14785 Maltose transport system permease protein MalF P2 domain CH56_613 PF00528 Binding-protein-dependent transport system inner membrane component CH56_614 PF06146 Phosphate-starvation-inducible E CH56_615 PF00342 Phosphoglucose isomerase CH56_616 PF01842 ACT domain CH56_616 PF00696 Amino acid kinase family CH56_617 PF08479 POTRA domain, ShlB-type CH56_617 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB CH56_617 PF17287 POTRA domain CH56_618 PF17287 POTRA domain CH56_618 PF08479 POTRA domain, ShlB-type CH56_618 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB CH56_619 PF13332 Hemagglutinin repeat CH56_619 PF05860 haemagglutination activity domain CH56_62 PF00884 Sulfatase CH56_620 PF02607 B12 binding domain CH56_620 PF00809 Pterin binding enzyme CH56_620 PF02310 B12 binding domain CH56_620 PF02574 Homocysteine S-methyltransferase CH56_620 PF02965 Vitamin B12 dependent methionine synthase, activation domain CH56_621 PF09339 IclR helix-turn-helix domain CH56_621 PF01614 Bacterial transcriptional regulator CH56_622 PF06315 Isocitrate dehydrogenase kinase/phosphatase (AceK) CH56_623 PF01312 FlhB HrpN YscU SpaS Family CH56_624 PF01311 Bacterial export proteins, family 1 CH56_625 PF01313 Bacterial export proteins, family 3 CH56_626 PF00813 FliP family CH56_627 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term CH56_63 PF13186 Iron-sulfur cluster-binding domain CH56_63 PF04055 Radical SAM superfamily CH56_630 PF18269 T3SS EscN ATPase C-terminal domain CH56_630 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CH56_631 PF00771 FHIPEP family CH56_632 PF00771 FHIPEP family CH56_635 PF01514 Secretory protein of YscJ/FliF family CH56_639 PF14525 AraC-binding-like domain CH56_639 PF12833 Helix-turn-helix domain CH56_644 PF01627 Hpt domain CH56_644 PF00072 Response regulator receiver domain CH56_644 PF00672 HAMP domain CH56_644 PF00512 His Kinase A (phospho-acceptor) domain CH56_644 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH56_644 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) CH56_645 PF00072 Response regulator receiver domain CH56_645 PF00196 Bacterial regulatory proteins, luxR family CH56_646 PF00375 Sodium:dicarboxylate symporter family CH56_647 PF13193 AMP-binding enzyme C-terminal domain CH56_647 PF00501 AMP-binding enzyme CH56_647 PF16177 Acetyl-coenzyme A synthetase N-terminus CH56_648 PF04341 Protein of unknown function, DUF485 CH56_649 PF00474 Sodium:solute symporter family CH56_651 PF02796 Helix-turn-helix domain of resolvase CH56_651 PF00665 Integrase core domain CH56_652 PF01695 IstB-like ATP binding protein CH56_653 PF08525 Opacity-associated protein A N-terminal motif CH56_653 PF04225 Opacity-associated protein A LysM-like domain CH56_654 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CH56_654 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase CH56_655 PF01814 Hemerythrin HHE cation binding domain CH56_655 PF04405 Domain of Unknown function (DUF542) CH56_656 PF00149 Calcineurin-like phosphoesterase CH56_656 PF02872 5'-nucleotidase, C-terminal domain CH56_657 PF00459 Inositol monophosphatase family CH56_658 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) CH56_659 PF06526 Protein of unknown function (DUF1107) CH56_66 PF01979 Amidohydrolase family CH56_660 PF00571 CBS domain CH56_660 PF03471 Transporter associated domain CH56_660 PF01595 Cyclin M transmembrane N-terminal domain CH56_661 PF01625 Peptide methionine sulfoxide reductase CH56_662 PF17243 POTRA domain TamA domain 1 CH56_662 PF01103 Surface antigen CH56_662 PF07244 Surface antigen variable number repeat CH56_663 PF04357 TamB, inner membrane protein subunit of TAM complex CH56_664 PF06094 Gamma-glutamyl cyclotransferase, AIG2-like CH56_665 PF00719 Inorganic pyrophosphatase CH56_666 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain CH56_667 PF02875 Mur ligase family, glutamate ligase domain CH56_667 PF01225 Mur ligase family, catalytic domain CH56_667 PF08245 Mur ligase middle domain CH56_669 PF01316 Arginine repressor, DNA binding domain CH56_669 PF02863 Arginine repressor, C-terminal domain CH56_67 PF03610 PTS system fructose IIA component CH56_670 PF00056 lactate/malate dehydrogenase, NAD binding domain CH56_670 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain CH56_671 PF13693 Winged helix-turn-helix DNA-binding CH56_673 PF00348 Polyprenyl synthetase CH56_674 PF00829 Ribosomal prokaryotic L21 protein CH56_675 PF01016 Ribosomal L27 protein CH56_676 PF00892 EamA-like transporter family CH56_678 PF01926 50S ribosome-binding GTPase CH56_678 PF01018 GTP1/OBG CH56_679 PF00512 His Kinase A (phospho-acceptor) domain CH56_679 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH56_68 PF03613 PTS system mannose/fructose/sorbose family IID component CH56_680 PF00512 His Kinase A (phospho-acceptor) domain CH56_680 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH56_680 PF00672 HAMP domain CH56_681 PF00072 Response regulator receiver domain CH56_681 PF00486 Transcriptional regulatory protein, C terminal CH56_682 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family CH56_683 PF01272 Transcription elongation factor, GreA/GreB, C-term CH56_683 PF03449 Transcription elongation factor, N-terminal CH56_684 PF01985 CRS1 / YhbY (CRM) domain CH56_685 PF01728 FtsJ-like methyltransferase CH56_686 PF01434 Peptidase family M41 CH56_686 PF06480 FtsH Extracellular CH56_686 PF17862 AAA+ lid domain CH56_686 PF00004 ATPase family associated with various cellular activities (AAA) CH56_687 PF00809 Pterin binding enzyme CH56_688 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III CH56_688 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II CH56_688 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain CH56_688 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I CH56_689 PF03840 Preprotein translocase SecG subunit CH56_69 PF03609 PTS system sorbose-specific iic component CH56_692 PF17384 RimP C-terminal SH3 domain CH56_692 PF02576 RimP N-terminal domain CH56_693 PF00575 S1 RNA binding domain CH56_693 PF13184 NusA-like KH domain CH56_693 PF08529 NusA N-terminal domain CH56_694 PF04760 Translation initiation factor IF-2, N-terminal region CH56_694 PF08364 Bacterial translation initiation factor IF-2 associated region CH56_694 PF03144 Elongation factor Tu domain 2 CH56_694 PF11987 Translation-initiation factor 2 CH56_694 PF00009 Elongation factor Tu GTP binding domain CH56_695 PF02033 Ribosome-binding factor A CH56_696 PF01509 TruB family pseudouridylate synthase (N terminal domain) CH56_696 PF09157 Pseudouridine synthase II TruB, C-terminal CH56_696 PF16198 tRNA pseudouridylate synthase B C-terminal domain CH56_697 PF00312 Ribosomal protein S15 CH56_699 PF00665 Integrase core domain CH56_699 PF13333 Integrase core domain CH56_699 PF13276 HTH-like domain CH56_7 PF03009 Glycerophosphoryl diester phosphodiesterase family CH56_70 PF03830 PTS system sorbose subfamily IIB component CH56_700 PF00575 S1 RNA binding domain CH56_700 PF03725 3' exoribonuclease family, domain 2 CH56_700 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain CH56_700 PF01138 3' exoribonuclease family, domain 1 CH56_700 PF00013 KH domain CH56_701 PF07719 Tetratricopeptide repeat CH56_701 PF13181 Tetratricopeptide repeat CH56_702 PF00270 DEAD/DEAH box helicase CH56_702 PF03880 DbpA RNA binding domain CH56_702 PF12343 Cold shock protein DEAD box A CH56_702 PF00271 Helicase conserved C-terminal domain CH56_704 PF01381 Helix-turn-helix CH56_705 PF00296 Luciferase-like monooxygenase CH56_707 PF00529 HlyD membrane-fusion protein of T1SS CH56_707 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CH56_708 PF00873 AcrB/AcrD/AcrF family CH56_709 PF02321 Outer membrane efflux protein CH56_709 PF08139 Prokaryotic membrane lipoprotein lipid attachment site CH56_71 PF01380 SIS domain CH56_713 PF13508 Acetyltransferase (GNAT) domain CH56_714 PF01541 GIY-YIG catalytic domain CH56_717 PF13416 Bacterial extracellular solute-binding protein CH56_719 PF00528 Binding-protein-dependent transport system inner membrane component CH56_72 PF08013 Tagatose 6 phosphate kinase CH56_720 PF00005 ABC transporter CH56_720 PF17912 MalK OB fold domain CH56_720 PF03459 TOBE domain CH56_723 PF13460 NAD(P)H-binding CH56_724 PF12706 Beta-lactamase superfamily domain CH56_726 PF07969 Amidohydrolase family CH56_727 PF00005 ABC transporter CH56_728 PF00005 ABC transporter CH56_729 PF06007 Phosphonate metabolism protein PhnJ CH56_73 PF08220 DeoR-like helix-turn-helix domain CH56_73 PF00455 DeoR C terminal sensor domain CH56_730 PF05861 Bacterial phosphonate metabolism protein (PhnI) CH56_731 PF05845 Bacterial phosphonate metabolism protein (PhnH) CH56_732 PF06754 Phosphonate metabolism protein PhnG CH56_733 PF00392 Bacterial regulatory proteins, gntR family CH56_733 PF07702 UTRA domain CH56_736 PF03477 ATP cone domain CH56_736 PF13597 Anaerobic ribonucleoside-triphosphate reductase CH56_737 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CH56_737 PF00005 ABC transporter CH56_738 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CH56_738 PF00005 ABC transporter CH56_739 PF12911 N-terminal TM domain of oligopeptide transport permease C CH56_739 PF00528 Binding-protein-dependent transport system inner membrane component CH56_74 PF00884 Sulfatase CH56_740 PF00528 Binding-protein-dependent transport system inner membrane component CH56_743 PF04074 YhcH/YjgK/YiaL CH56_744 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain CH56_744 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain CH56_745 PF06877 Regulator of ribonuclease activity B CH56_746 PF00583 Acetyltransferase (GNAT) family CH56_747 PF08264 Anticodon-binding domain of tRNA CH56_747 PF10458 Valyl tRNA synthetase tRNA binding arm CH56_747 PF00133 tRNA synthetases class I (I, L, M and V) CH56_748 PF04364 DNA polymerase III chi subunit, HolC CH56_749 PF00883 Cytosol aminopeptidase family, catalytic domain CH56_749 PF02789 Cytosol aminopeptidase family, N-terminal domain CH56_750 PF03739 Lipopolysaccharide export system permease LptF/LptG CH56_751 PF03739 Lipopolysaccharide export system permease LptF/LptG CH56_753 PF13356 Arm DNA-binding domain CH56_753 PF00589 Phage integrase family CH56_756 PF08676 MutL C terminal dimerisation domain CH56_756 PF01119 DNA mismatch repair protein, C-terminal domain CH56_757 PF00665 Integrase core domain CH56_757 PF02796 Helix-turn-helix domain of resolvase CH56_758 PF17287 POTRA domain CH56_758 PF08479 POTRA domain, ShlB-type CH56_758 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB CH56_76 PF07549 SecD/SecF GG Motif CH56_76 PF02355 Protein export membrane protein CH56_760 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CH56_761 PF00528 Binding-protein-dependent transport system inner membrane component CH56_762 PF12911 N-terminal TM domain of oligopeptide transport permease C CH56_762 PF00528 Binding-protein-dependent transport system inner membrane component CH56_763 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CH56_763 PF00005 ABC transporter CH56_764 PF00005 ABC transporter CH56_764 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CH56_765 PF01270 Glycosyl hydrolases family 8 CH56_766 PF00672 HAMP domain CH56_766 PF17154 Gammaproteobacterial periplasmic sensor domain CH56_766 PF00990 Diguanylate cyclase, GGDEF domain CH56_766 PF00563 EAL domain CH56_767 PF06178 Oligogalacturonate-specific porin protein (KdgM) CH56_768 PF06917 Periplasmic pectate lyase CH56_77 PF02355 Protein export membrane protein CH56_77 PF13721 SecD export protein N-terminal TM region CH56_77 PF07549 SecD/SecF GG Motif CH56_770 PF00375 Sodium:dicarboxylate symporter family CH56_772 PF05193 Peptidase M16 inactive domain CH56_772 PF00675 Insulinase (Peptidase family M16) CH56_773 PF00294 pfkB family carbohydrate kinase CH56_774 PF01361 Tautomerase enzyme CH56_775 PF00563 EAL domain CH56_776 PF05170 AsmA family CH56_777 PF02611 CDP-diacylglycerol pyrophosphatase CH56_778 PF03631 Virulence factor BrkB CH56_78 PF02699 Preprotein translocase subunit CH56_783 PF02595 Glycerate kinase family CH56_784 PF02447 GntP family permease CH56_785 PF05651 Putative sugar diacid recognition CH56_785 PF17853 GGDEF-like domain CH56_785 PF13556 PucR C-terminal helix-turn-helix domain CH56_786 PF07992 Pyridine nucleotide-disulphide oxidoreductase CH56_786 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CH56_787 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ CH56_788 PF01432 Peptidase family M3 CH56_789 PF04445 Putative SAM-dependent methyltransferase CH56_79 PF01702 Queuine tRNA-ribosyltransferase CH56_790 PF00413 Matrixin CH56_790 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) CH56_790 PF08548 Peptidase M10 serralysin C terminal CH56_791 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase CH56_791 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain CH56_792 PF00582 Universal stress protein family CH56_793 PF00872 Transposase, Mutator family CH56_794 PF10625 Universal stress protein B (UspB) CH56_796 PF01384 Phosphate transporter family CH56_798 PF00072 Response regulator receiver domain CH56_798 PF08448 PAS fold CH56_798 PF00512 His Kinase A (phospho-acceptor) domain CH56_798 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH56_798 PF13188 PAS domain CH56_799 PF00005 ABC transporter CH56_80 PF02547 Queuosine biosynthesis protein CH56_800 PF02653 Branched-chain amino acid transport system / permease component CH56_801 PF13407 Periplasmic binding protein domain CH56_803 PF01116 Fructose-bisphosphate aldolase class-II CH56_804 PF01116 Fructose-bisphosphate aldolase class-II CH56_806 PF00072 Response regulator receiver domain CH56_806 PF00486 Transcriptional regulatory protein, C terminal CH56_808 PF02678 Pirin CH56_808 PF17954 Quercetinase C-terminal cupin domain CH56_809 PF00356 Bacterial regulatory proteins, lacI family CH56_809 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family CH56_81 PF04336 Acyl carrier protein phosphodiesterase CH56_810 PF02447 GntP family permease CH56_811 PF01202 Shikimate kinase CH56_815 PF01914 MarC family integral membrane protein CH56_816 PF01118 Semialdehyde dehydrogenase, NAD binding domain CH56_816 PF02774 Semialdehyde dehydrogenase, dimerisation domain CH56_82 PF10417 C-terminal domain of 1-Cys peroxiredoxin CH56_82 PF00578 AhpC/TSA family CH56_821 PF02369 Bacterial Ig-like domain (group 1) CH56_821 PF11924 Inverse autotransporter, beta-domain CH56_821 PF07979 Intimin C-type lectin domain CH56_821 PF09134 Invasin, domain 3 CH56_822 PF07694 5TMR of 5TMR-LYT CH56_822 PF06580 Histidine kinase CH56_823 PF00128 Alpha amylase, catalytic domain CH56_823 PF02806 Alpha amylase, C-terminal all-beta domain CH56_823 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) CH56_824 PF00128 Alpha amylase, catalytic domain CH56_824 PF18390 Glycogen debranching enzyme C-terminal domain CH56_824 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) CH56_825 PF00483 Nucleotidyl transferase CH56_826 PF08323 Starch synthase catalytic domain CH56_826 PF00534 Glycosyl transferases group 1 CH56_827 PF00343 Carbohydrate phosphorylase CH56_828 PF16901 C-terminal domain of alpha-glycerophosphate oxidase CH56_828 PF01266 FAD dependent oxidoreductase CH56_829 PF00872 Transposase, Mutator family CH56_83 PF01797 Transposase IS200 like CH56_830 PF00665 Integrase core domain CH56_830 PF02796 Helix-turn-helix domain of resolvase CH56_832 PF01695 IstB-like ATP binding protein CH56_833 PF08479 POTRA domain, ShlB-type CH56_833 PF17287 POTRA domain CH56_833 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB CH56_834 PF05860 haemagglutination activity domain CH56_834 PF13332 Hemagglutinin repeat CH56_834 PF05594 Haemagluttinin repeat CH56_834 PF04829 Pre-toxin domain with VENN motif CH56_837 PF07690 Major Facilitator Superfamily CH56_838 PF05231 MASE1 CH56_838 PF07730 Histidine kinase CH56_838 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH56_839 PF00196 Bacterial regulatory proteins, luxR family CH56_839 PF00072 Response regulator receiver domain CH56_840 PF08019 Phosphoethanolamine transferase EptA/EptB CH56_840 PF00884 Sulfatase CH56_841 PF12146 Serine aminopeptidase, S33 CH56_842 PF00324 Amino acid permease CH56_843 PF00221 Aromatic amino acid lyase CH56_844 PF01175 Urocanase Rossmann-like domain CH56_844 PF17392 Urocanase C-terminal domain CH56_844 PF17391 Urocanase N-terminal domain CH56_845 PF00291 Pyridoxal-phosphate dependent enzyme CH56_846 PF00156 Phosphoribosyl transferase domain CH56_849 PF01497 Periplasmic binding protein CH56_850 PF01032 FecCD transport family CH56_851 PF01032 FecCD transport family CH56_853 PF00005 ABC transporter CH56_856 PF13737 Transposase DDE domain CH56_857 PF13737 Transposase DDE domain CH56_858 PF04606 Ogr/Delta-like zinc finger CH56_860 PF13356 Arm DNA-binding domain CH56_860 PF00589 Phage integrase family CH56_860 PF14659 Phage integrase, N-terminal SAM-like domain CH56_862 PF12833 Helix-turn-helix domain CH56_863 PF02653 Branched-chain amino acid transport system / permease component CH56_864 PF00005 ABC transporter CH56_865 PF00005 ABC transporter CH56_866 PF13407 Periplasmic binding protein domain CH56_867 PF13407 Periplasmic binding protein domain CH56_869 PF02782 FGGY family of carbohydrate kinases, C-terminal domain CH56_869 PF00370 FGGY family of carbohydrate kinases, N-terminal domain CH56_87 PF02903 Alpha amylase, N-terminal ig-like domain CH56_87 PF00128 Alpha amylase, catalytic domain CH56_871 PF02753 Pili assembly chaperone PapD, C-terminal domain CH56_871 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain CH56_872 PF00577 Outer membrane usher protein CH56_872 PF13953 PapC C-terminal domain CH56_872 PF13954 PapC N-terminal domain CH56_873 PF13954 PapC N-terminal domain CH56_873 PF00577 Outer membrane usher protein CH56_873 PF13953 PapC C-terminal domain CH56_874 PF00577 Outer membrane usher protein CH56_874 PF13954 PapC N-terminal domain CH56_874 PF13953 PapC C-terminal domain CH56_875 PF00419 Fimbrial protein CH56_876 PF01757 Acyltransferase family CH56_879 PF13333 Integrase core domain CH56_879 PF00665 Integrase core domain CH56_879 PF13276 HTH-like domain CH56_88 PF00665 Integrase core domain CH56_88 PF02796 Helix-turn-helix domain of resolvase CH56_881 PF00204 DNA gyrase B CH56_881 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH56_881 PF01751 Toprim domain CH56_881 PF00986 DNA gyrase B subunit, carboxyl terminus CH56_881 PF18053 DNA gyrase B subunit insert domain CH56_882 PF02463 RecF/RecN/SMC N terminal domain CH56_883 PF00712 DNA polymerase III beta subunit, N-terminal domain CH56_883 PF02767 DNA polymerase III beta subunit, central domain CH56_883 PF02768 DNA polymerase III beta subunit, C-terminal domain CH56_884 PF08299 Bacterial dnaA protein helix-turn-helix CH56_884 PF11638 DnaA N-terminal domain CH56_884 PF00308 Bacterial dnaA protein CH56_886 PF00468 Ribosomal protein L34 CH56_887 PF00825 Ribonuclease P CH56_888 PF01809 Putative membrane protein insertion efficiency factor CH56_889 PF02096 60Kd inner membrane protein CH56_889 PF14849 YidC periplasmic domain CH56_89 PF13673 Acetyltransferase (GNAT) domain CH56_890 PF10396 GTP-binding protein TrmE N-terminus CH56_890 PF12631 MnmE helical domain CH56_890 PF01926 50S ribosome-binding GTPase CH56_891 PF07055 Enoyl reductase FAD binding domain CH56_891 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase CH56_891 PF12241 Trans-2-enoyl-CoA reductase catalytic region CH56_894 PF00860 Permease family CH56_895 PF13419 Haloacid dehalogenase-like hydrolase CH56_896 PF00528 Binding-protein-dependent transport system inner membrane component CH56_897 PF00528 Binding-protein-dependent transport system inner membrane component CH56_898 PF00497 Bacterial extracellular solute-binding proteins, family 3 CH56_9 PF02424 ApbE family CH56_90 PF00485 Phosphoribulokinase / Uridine kinase family CH56_900 PF01895 PhoU domain CH56_901 PF00005 ABC transporter CH56_902 PF00528 Binding-protein-dependent transport system inner membrane component CH56_903 PF00528 Binding-protein-dependent transport system inner membrane component CH56_904 PF12849 PBP superfamily domain CH56_905 PF01380 SIS domain CH56_906 PF12804 MobA-like NTP transferase domain CH56_906 PF00132 Bacterial transferase hexapeptide (six repeats) CH56_907 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain CH56_907 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain CH56_908 PF02874 ATP synthase alpha/beta family, beta-barrel domain CH56_908 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CH56_909 PF00231 ATP synthase CH56_91 PF08279 HTH domain CH56_91 PF02237 Biotin protein ligase C terminal domain CH56_91 PF03099 Biotin/lipoate A/B protein ligase family CH56_910 PF00306 ATP synthase alpha/beta chain, C terminal domain CH56_910 PF02874 ATP synthase alpha/beta family, beta-barrel domain CH56_910 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CH56_911 PF00213 ATP synthase delta (OSCP) subunit CH56_912 PF00430 ATP synthase B/B' CF(0) CH56_913 PF00137 ATP synthase subunit C CH56_914 PF00119 ATP synthase A chain CH56_915 PF03899 ATP synthase I chain CH56_916 PF02527 rRNA small subunit methyltransferase G CH56_917 PF13932 GidA associated domain CH56_917 PF01134 Glucose inhibited division protein A CH56_918 PF00258 Flavodoxin CH56_919 PF01037 Lrp/AsnC ligand binding domain CH56_92 PF01565 FAD binding domain CH56_92 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain CH56_920 PF03590 Aspartate-ammonia ligase CH56_921 PF05762 VWA domain containing CoxE-like protein CH56_922 PF12592 Protein of unknown function (DUF3763) CH56_922 PF17868 AAA lid domain CH56_922 PF07728 AAA domain (dynein-related subfamily) CH56_923 PF02705 K+ potassium transporter CH56_924 PF05025 RbsD / FucU transport protein family CH56_925 PF00294 pfkB family carbohydrate kinase CH56_926 PF07690 Major Facilitator Superfamily CH56_928 PF07729 FCD domain CH56_928 PF00392 Bacterial regulatory proteins, gntR family CH56_933 PF00872 Transposase, Mutator family CH56_934 PF03205 Molybdopterin guanine dinucleotide synthesis protein B CH56_935 PF12804 MobA-like NTP transferase domain CH56_936 PF06288 Protein of unknown function (DUF1040) CH56_937 PF01636 Phosphotransferase enzyme family CH56_938 PF01323 DSBA-like thioredoxin domain CH56_939 PF01367 5'-3' exonuclease, C-terminal SAM fold CH56_939 PF01612 3'-5' exonuclease CH56_939 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain CH56_939 PF00476 DNA polymerase family A CH56_940 PF01926 50S ribosome-binding GTPase CH56_941 PF04220 Der GTPase activator (YihI) CH56_942 PF06969 HemN C-terminal domain CH56_942 PF04055 Radical SAM superfamily CH56_943 PF02954 Bacterial regulatory protein, Fis family CH56_943 PF00158 Sigma-54 interaction domain CH56_943 PF00072 Response regulator receiver domain CH56_944 PF00512 His Kinase A (phospho-acceptor) domain CH56_944 PF00989 PAS fold CH56_944 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH56_946 PF00120 Glutamine synthetase, catalytic domain CH56_946 PF03951 Glutamine synthetase, beta-Grasp domain CH56_948 PF13419 Haloacid dehalogenase-like hydrolase CH56_949 PF03631 Virulence factor BrkB CH56_950 PF02580 D-Tyr-tRNA(Tyr) deacylase CH56_951 PF00665 Integrase core domain CH56_951 PF02796 Helix-turn-helix domain of resolvase CH56_952 PF09500 Putative thioesterase (yiiD_Cterm) CH56_952 PF00583 Acetyltransferase (GNAT) family CH56_953 PF05170 AsmA family CH56_954 PF00860 Permease family CH56_955 PF03616 Sodium/glutamate symporter CH56_956 PF00271 Helicase conserved C-terminal domain CH56_956 PF17191 RecG wedge domain CH56_956 PF00270 DEAD/DEAH box helicase CH56_957 PF00588 SpoU rRNA Methylase family CH56_957 PF12105 SpoU, rRNA methylase, C-terminal CH56_958 PF04607 Region found in RelA / SpoT proteins CH56_958 PF13291 ACT domain CH56_958 PF02824 TGS domain CH56_959 PF01192 RNA polymerase Rpb6 CH56_960 PF00625 Guanylate kinase CH56_961 PF03120 NAD-dependent DNA ligase OB-fold domain CH56_961 PF01653 NAD-dependent DNA ligase adenylation domain CH56_962 PF03458 UPF0126 domain CH56_963 PF03755 YicC-like family, N-terminal region CH56_963 PF08340 Domain of unknown function (DUF1732) CH56_964 PF03725 3' exoribonuclease family, domain 2 CH56_964 PF01138 3' exoribonuclease family, domain 1 CH56_965 PF01797 Transposase IS200 like CH56_966 PF00156 Phosphoribosyl transferase domain CH56_967 PF00440 Bacterial regulatory proteins, tetR family CH56_968 PF00692 dUTPase CH56_969 PF02441 Flavoprotein CH56_969 PF04127 DNA / pantothenate metabolism flavoprotein CH56_970 PF04002 RadC-like JAB domain CH56_971 PF00830 Ribosomal L28 family CH56_972 PF00471 Ribosomal protein L33 CH56_973 PF06827 Zinc finger found in FPG and IleRS CH56_973 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain CH56_973 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain CH56_974 PF01467 Cytidylyltransferase-like CH56_975 PF00535 Glycosyl transferase family 2 CH56_976 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) CH56_977 PF01075 Glycosyltransferase family 9 (heptosyltransferase) CH56_978 PF01075 Glycosyltransferase family 9 (heptosyltransferase) CH56_979 PF01370 NAD dependent epimerase/dehydratase family CH56_98 PF09383 NIL domain CH56_98 PF00005 ABC transporter CH56_980 PF00155 Aminotransferase class I and II CH56_981 PF00107 Zinc-binding dehydrogenase CH56_981 PF08240 Alcohol dehydrogenase GroES-like domain CH56_982 PF04748 Divergent polysaccharide deacetylase CH56_983 PF04748 Divergent polysaccharide deacetylase CH56_984 PF01551 Peptidase family M23 CH56_985 PF01676 Metalloenzyme superfamily CH56_985 PF06415 BPG-independent PGAM N-terminus (iPGM_N) CH56_986 PF00581 Rhodanese-like domain CH56_987 PF00462 Glutaredoxin CH56_988 PF02556 Preprotein translocase subunit SecB CH56_989 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus CH56_989 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus CH56_99 PF00528 Binding-protein-dependent transport system inner membrane component CH56_990 PF00132 Bacterial transferase hexapeptide (six repeats) CH56_990 PF06426 Serine acetyltransferase, N-terminal CH56_991 PF00588 SpoU rRNA Methylase family CH56_992 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain CH56_992 PF12833 Helix-turn-helix domain CH56_992 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain CH56_992 PF02805 Metal binding domain of Ada CH56_993 PF00665 Integrase core domain CH56_993 PF02796 Helix-turn-helix domain of resolvase CH56_994 PF01695 IstB-like ATP binding protein CH56_995 PF00672 HAMP domain CH56_995 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH56_995 PF00512 His Kinase A (phospho-acceptor) domain CH56_995 PF16527 Two-component sensor protein CpxA, periplasmic domain CH56_996 PF00486 Transcriptional regulatory protein, C terminal CH56_996 PF00072 Response regulator receiver domain CH56_997 PF07813 LTXXQ motif family protein CH56_998 PF04754 Putative transposase, YhgA-like CH56_999 PF16916 Dimerisation domain of Zinc Transporter CH56_999 PF01545 Cation efflux family