CH56_1016 SM01321 CH56_1016 CH56_1017 SM00382 ATPases associated with a variety of cellular activities CH56_1023 SM00382 ATPases associated with a variety of cellular activities CH56_1023 SM01086 C-terminal, D2-small domain, of ClpB protein CH56_1027 SM01321 CH56_1027 CH56_1052 SM01152 CH56_1052 CH56_1054 SM00729 Elongator protein 3, MiaB family, Radical SAM CH56_106 SM01322 CH56_106 CH56_1062 SM00478 endonuclease III CH56_1062 SM00525 CH56_1062 CH56_1068 SM00382 ATPases associated with a variety of cellular activities CH56_1079 SM00382 ATPases associated with a variety of cellular activities CH56_1079 SM01086 C-terminal, D2-small domain, of ClpB protein CH56_1092 SM00421 helix_turn_helix, Lux Regulon CH56_110 SM00977 TilS substrate C-terminal domain CH56_1100 SM01006 Siderophore biosynthesis protein domain CH56_1126 SM00862 Transcriptional regulatory protein, C terminal CH56_113 SM00481 DNA polymerase alpha chain like domain CH56_1140 SM00858 CH56_1140 CH56_1149 SM00382 ATPases associated with a variety of cellular activities CH56_1165 SM01321 CH56_1165 CH56_1189 SM00563 Phosphate acyltransferases CH56_119 SM00935 Outer membrane protein (OmpH-like) CH56_1190 SM00434 DNA Topoisomerase IV CH56_1193 SM00387 Histidine kinase-like ATPases CH56_1193 SM00433 TopoisomeraseII CH56_1199 SM01321 CH56_1199 CH56_121 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. CH56_1210 SM01118 CH56_1210 CH56_1211 SM00287 Bacterial SH3 domain homologues CH56_1212 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CH56_1214 SM00905 Dihydroneopterin aldolase CH56_1215 SM01207 CH56_1215 CH56_1218 SM00400 zinc finger CH56_1218 SM00493 CH56_1218 CH56_1218 SM00766 DNA primase DnaG DnaB-binding CH56_1232 SM00382 ATPases associated with a variety of cellular activities CH56_1242 SM01081 Putative carbohydrate binding domain CH56_1245 SM01321 CH56_1245 CH56_1258 SM01321 CH56_1258 CH56_1259 SM00354 helix_turn _helix lactose operon repressor CH56_1265 SM00052 Putative diguanylate phosphodiesterase CH56_1267 SM00382 ATPases associated with a variety of cellular activities CH56_1270 SM00062 Bacterial periplasmic substrate-binding proteins CH56_1279 SM00859 Semialdehyde dehydrogenase, NAD binding domain CH56_1280 SM01321 CH56_1280 CH56_1282 SM00342 helix_turn_helix, arabinose operon control protein CH56_1287 SM00825 Beta-ketoacyl synthase CH56_1295 SM00463 Small MutS-related domain CH56_1296 SM00855 Phosphoglycerate mutase family CH56_13 SM00900 CH56_13 CH56_131 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CH56_1310 SM00382 ATPases associated with a variety of cellular activities CH56_1328 SM01321 CH56_1328 CH56_1330 SM00116 Domain in cystathionine beta-synthase and other proteins. CH56_1330 SM01240 CH56_1330 CH56_1335 SM00564 beta-propeller repeat CH56_1339 SM00530 Helix-turn-helix XRE-family like proteins CH56_1340 SM00028 Tetratricopeptide repeats CH56_1342 SM00562 CH56_1342 CH56_1343 SM00247 Beta/gamma crystallins CH56_1344 SM00869 Autotransporter beta-domain CH56_1352 SM00271 DnaJ molecular chaperone homology domain CH56_1369 SM00382 ATPases associated with a variety of cellular activities CH56_1382 SM00411 bacterial (prokaryotic) histone like domain CH56_1384 SM01209 CH56_1384 CH56_1384 SM01210 CH56_1384 CH56_1385 SM00798 AICARFT/IMPCHase bienzyme CH56_1385 SM00851 MGS-like domain CH56_139 SM00382 ATPases associated with a variety of cellular activities CH56_1395 SM00382 ATPases associated with a variety of cellular activities CH56_140 SM00382 ATPases associated with a variety of cellular activities CH56_1400 SM00382 ATPases associated with a variety of cellular activities CH56_1416 SM00507 HNH nucleases CH56_1427 SM00487 DEAD-like helicases superfamily CH56_1427 SM00490 helicase superfamily c-terminal domain CH56_1429 SM00357 Cold shock protein domain CH56_1429 SM00382 ATPases associated with a variety of cellular activities CH56_1429 SM00959 Rho termination factor, N-terminal domain CH56_143 SM00062 Bacterial periplasmic substrate-binding proteins CH56_1433 SM00984 UDP binding domain CH56_1449 SM00382 ATPases associated with a variety of cellular activities CH56_1456 SM01219 CH56_1456 CH56_1466 SM01321 CH56_1466 CH56_1471 SM00341 Helicase and RNase D C-terminal CH56_1471 SM00487 DEAD-like helicases superfamily CH56_1471 SM00490 helicase superfamily c-terminal domain CH56_1471 SM00956 CH56_1471 CH56_1493 SM00382 ATPases associated with a variety of cellular activities CH56_1493 SM00962 SRP54-type protein, GTPase domain CH56_1493 SM00963 SRP54-type protein, helical bundle domain CH56_1494 SM00382 ATPases associated with a variety of cellular activities CH56_1497 SM01321 CH56_1497 CH56_1500 SM01403 CH56_1500 CH56_1504 SM01382 CH56_1504 CH56_1504 SM01383 CH56_1504 CH56_1507 SM00322 K homology RNA-binding domain CH56_151 SM00347 helix_turn_helix multiple antibiotic resistance protein CH56_1511 SM01374 CH56_1511 CH56_1512 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. CH56_1525 SM00363 S4 RNA-binding domain CH56_1525 SM01390 CH56_1525 CH56_1526 SM00662 RNA polymerases D CH56_1528 SM00422 helix_turn_helix, mercury resistance CH56_154 SM00967 RNA 2'-O ribose methyltransferase substrate binding CH56_1556 SM00382 ATPases associated with a variety of cellular activities CH56_156 SM01144 CH56_156 CH56_1566 SM00382 ATPases associated with a variety of cellular activities CH56_157 SM00881 CoA binding domain CH56_1574 SM00729 Elongator protein 3, MiaB family, Radical SAM CH56_158 SM00155 Phospholipase D. Active site motifs. CH56_1589 SM01321 CH56_1589 CH56_1595 SM00060 Fibronectin type 3 domain CH56_1596 SM00869 Autotransporter beta-domain CH56_1600 SM01321 CH56_1600 CH56_1608 SM00382 ATPases associated with a variety of cellular activities CH56_1611 SM00967 RNA 2'-O ribose methyltransferase substrate binding CH56_1612 SM00316 Ribosomal protein S1-like RNA-binding domain CH56_1612 SM00357 Cold shock protein domain CH56_1612 SM00955 CH56_1612 CH56_1614 SM00788 Adenylosuccinate synthetase CH56_1616 SM00244 prohibitin homologues CH56_1617 SM00244 prohibitin homologues CH56_1621 SM00853 MutL C terminal dimerisation domain CH56_1621 SM01340 CH56_1621 CH56_1622 SM00257 Lysin motif CH56_1622 SM00646 CH56_1622 CH56_1629 SM00479 CH56_1629 CH56_1639 SM00841 Elongation factor P, C-terminal CH56_1639 SM01185 CH56_1639 CH56_164 SM00382 ATPases associated with a variety of cellular activities CH56_164 SM01086 C-terminal, D2-small domain, of ClpB protein CH56_1643 SM00883 Chaperonin 10 Kd subunit CH56_1649 SM00926 Molybdopterin oxidoreductase Fe4S4 domain CH56_1655 SM01276 CH56_1655 CH56_1659 SM01321 CH56_1659 CH56_166 SM00363 S4 RNA-binding domain CH56_1662 SM00342 helix_turn_helix, arabinose operon control protein CH56_1663 SM00342 helix_turn_helix, arabinose operon control protein CH56_1668 SM01007 Class II Aldolase and Adducin N-terminal domain CH56_1675 SM01005 Alanine racemase, C-terminal domain CH56_1676 SM00382 ATPases associated with a variety of cellular activities CH56_1678 SM00829 Enoylreductase CH56_1679 SM00382 ATPases associated with a variety of cellular activities CH56_1679 SM01086 C-terminal, D2-small domain, of ClpB protein CH56_169 SM01321 CH56_169 CH56_1690 SM00271 DnaJ molecular chaperone homology domain CH56_1694 SM00650 Ribosomal RNA adenine dimethylases CH56_170 SM00830 Chorismate mutase type II CH56_1702 SM00851 MGS-like domain CH56_1702 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain CH56_1703 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain CH56_1705 SM01321 CH56_1705 CH56_171 SM00830 Chorismate mutase type II CH56_1710 SM00904 Riboflavin kinase CH56_1712 SM01321 CH56_1712 CH56_1715 SM00271 DnaJ molecular chaperone homology domain CH56_1720 SM00852 Probable molybdopterin binding domain CH56_1727 SM01321 CH56_1727 CH56_1729 SM00448 cheY-homologous receiver domain CH56_1729 SM00862 Transcriptional regulatory protein, C terminal CH56_173 SM00448 cheY-homologous receiver domain CH56_173 SM00850 LytTr DNA-binding domain CH56_1732 SM00855 Phosphoglycerate mutase family CH56_1733 SM00342 helix_turn_helix, arabinose operon control protein CH56_1733 SM00871 Bacterial transcription activator, effector binding domain CH56_1737 SM00831 Cation transporter/ATPase, N-terminus CH56_1739 SM00267 diguanylate cyclase CH56_174 SM00382 ATPases associated with a variety of cellular activities CH56_1741 SM00382 ATPases associated with a variety of cellular activities CH56_1743 SM00530 Helix-turn-helix XRE-family like proteins CH56_1744 SM00382 ATPases associated with a variety of cellular activities CH56_1749 SM00941 Pyrimidine nucleoside phosphorylase C-terminal domain CH56_1750 SM01133 CH56_1750 CH56_1755 SM00749 bacterial OsmY and nodulation domain CH56_176 SM00876 Biotin and Thiamin Synthesis associated domain CH56_1762 SM00267 diguanylate cyclase CH56_1765 SM01321 CH56_1765 CH56_177 SM01321 CH56_177 CH56_1773 SM00382 ATPases associated with a variety of cellular activities CH56_1777 SM01133 CH56_1777 CH56_1783 SM00342 helix_turn_helix, arabinose operon control protein CH56_1797 SM00382 ATPases associated with a variety of cellular activities CH56_1797 SM00962 SRP54-type protein, GTPase domain CH56_1797 SM00963 SRP54-type protein, helical bundle domain CH56_1800 SM00382 ATPases associated with a variety of cellular activities CH56_1803 SM01091 Transporter associated domain CH56_1813 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain CH56_1818 SM00382 ATPases associated with a variety of cellular activities CH56_1826 SM00861 Transketolase, pyrimidine binding domain CH56_1829 SM00382 ATPases associated with a variety of cellular activities CH56_1838 SM00926 Molybdopterin oxidoreductase Fe4S4 domain CH56_1839 SM01007 Class II Aldolase and Adducin N-terminal domain CH56_184 SM01321 CH56_184 CH56_1840 SM00420 helix_turn_helix, Deoxyribose operon repressor CH56_1840 SM01134 CH56_1840 CH56_1843 SM00382 ATPases associated with a variety of cellular activities CH56_185 SM00825 Beta-ketoacyl synthase CH56_1854 SM01235 CH56_1854 CH56_1855 SM00062 Bacterial periplasmic substrate-binding proteins CH56_1858 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor CH56_1861 SM01120 CH56_1861 CH56_1864 SM00829 Enoylreductase CH56_1866 SM00533 DNA-binding domain of DNA mismatch repair MUTS family CH56_1866 SM00534 ATPase domain of DNA mismatch repair MUTS family CH56_1868 SM00257 Lysin motif CH56_187 SM00822 CH56_187 CH56_188 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. CH56_1891 SM01192 CH56_1891 CH56_1891 SM01193 CH56_1891 CH56_1894 SM00954 Region found in RelA / SpoT proteins CH56_1895 SM00073 Histidine Phosphotransfer domain CH56_1895 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CH56_1895 SM00387 Histidine kinase-like ATPases CH56_1895 SM00388 His Kinase A (phosphoacceptor) domain CH56_1895 SM00448 cheY-homologous receiver domain CH56_1896 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. CH56_1897 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CH56_1906 SM00382 ATPases associated with a variety of cellular activities CH56_1908 SM00487 DEAD-like helicases superfamily CH56_1908 SM00490 helicase superfamily c-terminal domain CH56_1908 SM00847 Helicase associated domain (HA2) Add an annotation CH56_1920 SM00382 ATPases associated with a variety of cellular activities CH56_1921 SM00947 Carbonic anhydrase CH56_1931 SM01321 CH56_1931 CH56_1935 SM00345 helix_turn_helix gluconate operon transcriptional repressor CH56_1935 SM00895 CH56_1935 CH56_1938 SM00644 CH56_1938 CH56_194 SM00363 S4 RNA-binding domain CH56_1943 SM01240 CH56_1943 CH56_1947 SM01321 CH56_1947 CH56_1949 SM00382 ATPases associated with a variety of cellular activities CH56_195 SM00316 Ribosomal protein S1-like RNA-binding domain CH56_1964 SM01217 CH56_1964 CH56_1970 SM00354 helix_turn _helix lactose operon repressor CH56_1972 SM00382 ATPases associated with a variety of cellular activities CH56_1975 SM00869 Autotransporter beta-domain CH56_1983 SM00912 haemagglutination activity domain CH56_1985 SM00327 von Willebrand factor (vWF) type A domain CH56_1987 SM00327 von Willebrand factor (vWF) type A domain CH56_1988 SM00327 von Willebrand factor (vWF) type A domain CH56_1990 SM00220 Serine/Threonine protein kinases, catalytic domain CH56_1995 SM00869 Autotransporter beta-domain CH56_2000 SM01321 CH56_2000 CH56_2002 SM00858 CH56_2002 CH56_2007 SM00345 helix_turn_helix gluconate operon transcriptional repressor CH56_2007 SM00895 CH56_2007 CH56_201 SM00869 Autotransporter beta-domain CH56_2023 SM00749 bacterial OsmY and nodulation domain CH56_2026 SM00073 Histidine Phosphotransfer domain CH56_2026 SM00091 PAS domain CH56_2026 SM00387 Histidine kinase-like ATPases CH56_2026 SM00388 His Kinase A (phosphoacceptor) domain CH56_2026 SM00448 cheY-homologous receiver domain CH56_2027 SM00729 Elongator protein 3, MiaB family, Radical SAM CH56_2037 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. CH56_2038 SM01321 CH56_2038 CH56_2039 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. CH56_2046 SM00382 ATPases associated with a variety of cellular activities CH56_2048 SM00116 Domain in cystathionine beta-synthase and other proteins. CH56_205 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CH56_205 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CH56_205 SM00319 Homologues of the ligand binding domain of Tar CH56_2052 SM00382 ATPases associated with a variety of cellular activities CH56_206 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CH56_206 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CH56_206 SM00319 Homologues of the ligand binding domain of Tar CH56_2062 SM00354 helix_turn _helix lactose operon repressor CH56_2064 SM00642 Alpha-amylase domain CH56_207 SM00138 Methyltransferase, chemotaxis proteins CH56_208 SM00448 cheY-homologous receiver domain CH56_2083 SM00382 ATPases associated with a variety of cellular activities CH56_209 SM00448 cheY-homologous receiver domain CH56_2093 SM00316 Ribosomal protein S1-like RNA-binding domain CH56_2098 SM00052 Putative diguanylate phosphodiesterase CH56_2098 SM00267 diguanylate cyclase CH56_2099 SM00829 Enoylreductase CH56_2104 SM00878 Biotin carboxylase C-terminal domain CH56_211 SM00644 CH56_211 CH56_2112 SM00345 helix_turn_helix gluconate operon transcriptional repressor CH56_2112 SM00895 CH56_2112 CH56_2116 SM00849 Metallo-beta-lactamase superfamily CH56_2118 SM00357 Cold shock protein domain CH56_2119 SM00357 Cold shock protein domain CH56_2120 SM01321 CH56_2120 CH56_2128 SM00382 ATPases associated with a variety of cellular activities CH56_2135 SM00382 ATPases associated with a variety of cellular activities CH56_2136 SM00382 ATPases associated with a variety of cellular activities CH56_2137 SM00382 ATPases associated with a variety of cellular activities CH56_215 SM01005 Alanine racemase, C-terminal domain CH56_2170 SM00422 helix_turn_helix, mercury resistance CH56_2172 SM00244 prohibitin homologues CH56_2174 SM00822 CH56_2174 CH56_2176 SM00382 ATPases associated with a variety of cellular activities CH56_2179 SM01001 AIR carboxylase CH56_2182 SM00840 CH56_2182 CH56_2183 SM01321 CH56_2183 CH56_2193 SM00563 Phosphate acyltransferases CH56_2195 SM00195 Dual specificity phosphatase, catalytic domain CH56_2195 SM00404 Protein tyrosine phosphatase, catalytic domain motif CH56_22 SM00710 Parallel beta-helix repeats CH56_2203 SM01321 CH56_2203 CH56_2204 SM00563 Phosphate acyltransferases CH56_2214 SM00421 helix_turn_helix, Lux Regulon CH56_2214 SM00448 cheY-homologous receiver domain CH56_2215 SM00387 Histidine kinase-like ATPases CH56_2215 SM00388 His Kinase A (phosphoacceptor) domain CH56_2215 SM00448 cheY-homologous receiver domain CH56_2216 SM00434 DNA Topoisomerase IV CH56_2222 SM00852 Probable molybdopterin binding domain CH56_2225 SM01060 CH56_2225 CH56_2226 SM00487 DEAD-like helicases superfamily CH56_2226 SM00488 CH56_2226 CH56_2226 SM00491 CH56_2226 CH56_2234 SM00382 ATPases associated with a variety of cellular activities CH56_2238 SM00450 Rhodanese Homology Domain CH56_2241 SM00382 ATPases associated with a variety of cellular activities CH56_2250 SM00382 ATPases associated with a variety of cellular activities CH56_2253 SM00507 HNH nucleases CH56_2254 SM01118 CH56_2254 CH56_226 SM00382 ATPases associated with a variety of cellular activities CH56_2261 SM01321 CH56_2261 CH56_2266 SM00778 Zinc-binding domain of primase-helicase CH56_2286 SM00861 Transketolase, pyrimidine binding domain CH56_2289 SM00881 CoA binding domain CH56_23 SM00912 haemagglutination activity domain CH56_2308 SM00855 Phosphoglycerate mutase family CH56_2317 SM00382 ATPases associated with a variety of cellular activities CH56_2322 SM00382 ATPases associated with a variety of cellular activities CH56_2327 SM00729 Elongator protein 3, MiaB family, Radical SAM CH56_2327 SM00876 Biotin and Thiamin Synthesis associated domain CH56_2331 SM00382 ATPases associated with a variety of cellular activities CH56_2332 SM00487 DEAD-like helicases superfamily CH56_2332 SM00490 helicase superfamily c-terminal domain CH56_2336 SM00729 Elongator protein 3, MiaB family, Radical SAM CH56_2341 SM01321 CH56_2341 CH56_2343 SM00382 ATPases associated with a variety of cellular activities CH56_235 SM00357 Cold shock protein domain CH56_2353 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CH56_2353 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CH56_2357 SM00530 Helix-turn-helix XRE-family like proteins CH56_2360 SM01007 Class II Aldolase and Adducin N-terminal domain CH56_2361 SM00420 helix_turn_helix, Deoxyribose operon repressor CH56_2361 SM01134 CH56_2361 CH56_239 SM00382 ATPases associated with a variety of cellular activities CH56_2390 SM01321 CH56_2390 CH56_2392 SM00487 DEAD-like helicases superfamily CH56_2392 SM00490 helicase superfamily c-terminal domain CH56_2393 SM00363 S4 RNA-binding domain CH56_2396 SM00382 ATPases associated with a variety of cellular activities CH56_240 SM00382 ATPases associated with a variety of cellular activities CH56_2400 SM00052 Putative diguanylate phosphodiesterase CH56_2403 SM00014 Acid phosphatase homologues CH56_2404 SM00833 Cobalamin synthesis protein cobW C-terminal domain CH56_2406 SM00345 helix_turn_helix gluconate operon transcriptional repressor CH56_2406 SM00895 CH56_2406 CH56_2409 SM00841 Elongation factor P, C-terminal CH56_2409 SM01185 CH56_2409 CH56_2419 SM00382 ATPases associated with a variety of cellular activities CH56_2425 SM00862 Transcriptional regulatory protein, C terminal CH56_2430 SM00518 AP endonuclease family 2 CH56_2437 SM00382 ATPases associated with a variety of cellular activities CH56_2444 SM00382 ATPases associated with a variety of cellular activities CH56_2444 SM00930 CH56_2444 CH56_2446 SM00936 Penicillin-binding protein 5, C-terminal domain CH56_2448 SM01321 CH56_2448 CH56_2449 SM00420 helix_turn_helix, Deoxyribose operon repressor CH56_2449 SM01134 CH56_2449 CH56_245 SM00988 UreE urease accessory protein, N-terminal domain CH56_2450 SM01133 CH56_2450 CH56_2451 SM00014 Acid phosphatase homologues CH56_2458 SM00382 ATPases associated with a variety of cellular activities CH56_2463 SM00062 Bacterial periplasmic substrate-binding proteins CH56_2463 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. CH56_2465 SM00244 prohibitin homologues CH56_2469 SM00382 ATPases associated with a variety of cellular activities CH56_2475 SM00062 Bacterial periplasmic substrate-binding proteins CH56_2475 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. CH56_2476 SM00382 ATPases associated with a variety of cellular activities CH56_2477 SM00830 Chorismate mutase type II CH56_2491 SM00357 Cold shock protein domain CH56_2494 SM00382 ATPases associated with a variety of cellular activities CH56_2494 SM01086 C-terminal, D2-small domain, of ClpB protein CH56_2496 SM00316 Ribosomal protein S1-like RNA-binding domain CH56_2498 SM00382 ATPases associated with a variety of cellular activities CH56_2499 SM00382 ATPases associated with a variety of cellular activities CH56_2500 SM01321 CH56_2500 CH56_2502 SM00344 helix_turn_helix ASNC type CH56_2503 SM00843 CH56_2503 CH56_2506 SM00382 ATPases associated with a variety of cellular activities CH56_2512 SM01321 CH56_2512 CH56_2524 SM01022 CH56_2524 CH56_2526 SM00487 DEAD-like helicases superfamily CH56_2526 SM00490 helicase superfamily c-terminal domain CH56_2532 SM00903 Flavin reductase like domain CH56_2542 SM00347 helix_turn_helix multiple antibiotic resistance protein CH56_2543 SM01091 Transporter associated domain CH56_2551 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) CH56_2551 SM00091 PAS domain CH56_2551 SM00267 diguanylate cyclase CH56_2555 SM00357 Cold shock protein domain CH56_2565 SM00342 helix_turn_helix, arabinose operon control protein CH56_2567 SM00382 ATPases associated with a variety of cellular activities CH56_2568 SM00090 RIO-like kinase CH56_2572 SM00354 helix_turn _helix lactose operon repressor CH56_2581 SM00421 helix_turn_helix, Lux Regulon CH56_2581 SM00448 cheY-homologous receiver domain CH56_259 SM00342 helix_turn_helix, arabinose operon control protein CH56_2591 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain CH56_2597 SM00634 Bacterial Ig-like domain (group 1) CH56_2599 SM00421 helix_turn_helix, Lux Regulon CH56_2601 SM00450 Rhodanese Homology Domain CH56_2604 SM00421 helix_turn_helix, Lux Regulon CH56_2627 SM00354 helix_turn _helix lactose operon repressor CH56_2629 SM00382 ATPases associated with a variety of cellular activities CH56_2639 SM00912 haemagglutination activity domain CH56_2645 SM01329 CH56_2645 CH56_2647 SM00354 helix_turn _helix lactose operon repressor CH56_2649 SM00382 ATPases associated with a variety of cellular activities CH56_2651 SM00829 Enoylreductase CH56_2661 SM00062 Bacterial periplasmic substrate-binding proteins CH56_2661 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. CH56_2663 SM00382 ATPases associated with a variety of cellular activities CH56_2664 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) CH56_2664 SM00091 PAS domain CH56_2664 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CH56_2669 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain CH56_268 SM00448 cheY-homologous receiver domain CH56_268 SM00862 Transcriptional regulatory protein, C terminal CH56_2681 SM00354 helix_turn _helix lactose operon repressor CH56_269 SM00387 Histidine kinase-like ATPases CH56_269 SM00388 His Kinase A (phosphoacceptor) domain CH56_2694 SM00926 Molybdopterin oxidoreductase Fe4S4 domain CH56_2694 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region CH56_2695 SM00928 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region CH56_2702 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CH56_2709 SM01321 CH56_2709 CH56_2711 SM00729 Elongator protein 3, MiaB family, Radical SAM CH56_2714 SM00116 Domain in cystathionine beta-synthase and other proteins. CH56_2714 SM01091 Transporter associated domain CH56_2716 SM00062 Bacterial periplasmic substrate-binding proteins CH56_2718 SM01321 CH56_2718 CH56_2722 SM00382 ATPases associated with a variety of cellular activities CH56_2733 SM00936 Penicillin-binding protein 5, C-terminal domain CH56_2736 SM00729 Elongator protein 3, MiaB family, Radical SAM CH56_2739 SM00357 Cold shock protein domain CH56_2741 SM00421 helix_turn_helix, Lux Regulon CH56_2746 SM00382 ATPases associated with a variety of cellular activities CH56_2753 SM00382 ATPases associated with a variety of cellular activities CH56_2764 SM01359 CH56_2764 CH56_2764 SM01360 CH56_2764 CH56_2773 SM00869 Autotransporter beta-domain CH56_2782 SM01217 CH56_2782 CH56_2789 SM00382 ATPases associated with a variety of cellular activities CH56_279 SM00796 Allophanate hydrolase subunit 1 CH56_2791 SM01004 Delta-aminolevulinic acid dehydratase CH56_2792 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. CH56_2792 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. CH56_280 SM00797 Allophanate hydrolase subunit 2 CH56_2819 SM00382 ATPases associated with a variety of cellular activities CH56_2825 SM01321 CH56_2825 CH56_2829 SM00870 CH56_2829 CH56_2835 SM00316 Ribosomal protein S1-like RNA-binding domain CH56_2836 SM00411 bacterial (prokaryotic) histone like domain CH56_2838 SM00849 Metallo-beta-lactamase superfamily CH56_2839 SM00382 ATPases associated with a variety of cellular activities CH56_2841 SM01150 CH56_2841 CH56_2842 SM00357 Cold shock protein domain CH56_285 SM00986 Uracil DNA glycosylase superfamily CH56_285 SM00987 UreE urease accessory protein, C-terminal domain CH56_2851 SM01321 CH56_2851 CH56_2854 SM00849 Metallo-beta-lactamase superfamily CH56_2856 SM01321 CH56_2856 CH56_2864 SM00981 CH56_2864 CH56_2865 SM00382 ATPases associated with a variety of cellular activities CH56_2869 SM01321 CH56_2869 CH56_2870 SM00634 Bacterial Ig-like domain (group 1) CH56_2873 SM00858 CH56_2873 CH56_2882 SM00047 Lysozyme subfamily 2 CH56_2887 SM00382 ATPases associated with a variety of cellular activities CH56_289 SM00248 ankyrin repeats CH56_2894 SM00478 endonuclease III CH56_2897 SM00342 helix_turn_helix, arabinose operon control protein CH56_29 SM01007 Class II Aldolase and Adducin N-terminal domain CH56_291 SM00487 DEAD-like helicases superfamily CH56_291 SM00490 helicase superfamily c-terminal domain CH56_2910 SM00062 Bacterial periplasmic substrate-binding proteins CH56_2910 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. CH56_2912 SM00382 ATPases associated with a variety of cellular activities CH56_2929 SM00421 helix_turn_helix, Lux Regulon CH56_2929 SM00448 cheY-homologous receiver domain CH56_2930 SM00278 Helix-hairpin-helix DNA-binding motif class 1 CH56_2930 SM00465 GIY-YIG type nucleases (URI domain) CH56_2958 SM00345 helix_turn_helix gluconate operon transcriptional repressor CH56_2958 SM00866 CH56_2958 CH56_2963 SM00382 ATPases associated with a variety of cellular activities CH56_2967 SM00382 ATPases associated with a variety of cellular activities CH56_2979 SM00822 CH56_2979 CH56_2979 SM00823 Phosphopantetheine attachment site CH56_2979 SM00824 Thioesterase CH56_2979 SM00825 Beta-ketoacyl synthase CH56_2979 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. CH56_2980 SM00823 Phosphopantetheine attachment site CH56_2981 SM00342 helix_turn_helix, arabinose operon control protein CH56_2982 SM00382 ATPases associated with a variety of cellular activities CH56_2983 SM00382 ATPases associated with a variety of cellular activities CH56_2993 SM00387 Histidine kinase-like ATPases CH56_2993 SM00388 His Kinase A (phosphoacceptor) domain CH56_2993 SM00448 cheY-homologous receiver domain CH56_2994 SM00062 Bacterial periplasmic substrate-binding proteins CH56_2995 SM00421 helix_turn_helix, Lux Regulon CH56_2995 SM00448 cheY-homologous receiver domain CH56_3 SM00089 Repeats in polycystic kidney disease 1 (PKD1) and other proteins CH56_3009 SM00420 helix_turn_helix, Deoxyribose operon repressor CH56_3009 SM01134 CH56_3009 CH56_301 SM00358 Double-stranded RNA binding motif CH56_301 SM00535 Ribonuclease III family CH56_3016 SM00382 ATPases associated with a variety of cellular activities CH56_3033 SM00382 ATPases associated with a variety of cellular activities CH56_3036 SM00155 Phospholipase D. Active site motifs. CH56_3039 SM00382 ATPases associated with a variety of cellular activities CH56_3040 SM00382 ATPases associated with a variety of cellular activities CH56_3047 SM00528 Domain in histone-like proteins of HNS family CH56_3048 SM01321 CH56_3048 CH56_3053 SM00382 ATPases associated with a variety of cellular activities CH56_3059 SM01040 BRO family, N-terminal domain CH56_306 SM01321 CH56_306 CH56_3082 SM00635 Bacterial Ig-like domain 2 CH56_3087 SM01321 CH56_3087 CH56_3088 SM00422 helix_turn_helix, mercury resistance CH56_3092 SM00890 Domain of unknown function CH56_3105 SM00490 helicase superfamily c-terminal domain CH56_3106 SM00847 Helicase associated domain (HA2) Add an annotation CH56_3108 SM00530 Helix-turn-helix XRE-family like proteins CH56_3109 SM00020 Trypsin-like serine protease CH56_3112 SM00867 YceI-like domain CH56_3115 SM01321 CH56_3115 CH56_312 SM00062 Bacterial periplasmic substrate-binding proteins CH56_3120 SM00014 Acid phosphatase homologues CH56_3122 SM00028 Tetratricopeptide repeats CH56_3124 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family CH56_3127 SM01007 Class II Aldolase and Adducin N-terminal domain CH56_313 SM01211 CH56_313 CH56_3132 SM00357 Cold shock protein domain CH56_3132 SM00955 CH56_3132 CH56_3135 SM00478 endonuclease III CH56_3135 SM00525 CH56_3135 CH56_3137 SM00900 CH56_3137 CH56_3139 SM00342 helix_turn_helix, arabinose operon control protein CH56_3149 SM00382 ATPases associated with a variety of cellular activities CH56_3154 SM00382 ATPases associated with a variety of cellular activities CH56_3156 SM00342 helix_turn_helix, arabinose operon control protein CH56_3165 SM00382 ATPases associated with a variety of cellular activities CH56_317 SM01321 CH56_317 CH56_3172 SM01321 CH56_3172 CH56_3175 SM01321 CH56_3175 CH56_318 SM00387 Histidine kinase-like ATPases CH56_318 SM00388 His Kinase A (phosphoacceptor) domain CH56_3181 SM00098 Alkaline phosphatase homologues CH56_3183 SM00100 Cyclic nucleotide-monophosphate binding domain CH56_3183 SM00419 helix_turn_helix, cAMP Regulatory protein CH56_3187 SM01002 Alanine dehydrogenase/PNT, C-terminal domain CH56_3187 SM01003 Alanine dehydrogenase/PNT, N-terminal domain CH56_3191 SM00448 cheY-homologous receiver domain CH56_3191 SM00862 Transcriptional regulatory protein, C terminal CH56_3192 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CH56_3193 SM00387 Histidine kinase-like ATPases CH56_3195 SM01321 CH56_3195 CH56_3196 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain CH56_3196 SM00437 Bacterial DNA topoisomerase I DNA-binding domain CH56_3196 SM00493 CH56_3196 CH56_320 SM00382 ATPases associated with a variety of cellular activities CH56_320 SM00448 cheY-homologous receiver domain CH56_3200 SM00822 CH56_3200 CH56_3202 SM00363 S4 RNA-binding domain CH56_3204 SM00481 DNA polymerase alpha chain like domain CH56_3211 SM00749 bacterial OsmY and nodulation domain CH56_322 SM00938 Nitrogen regulatory protein P-II CH56_3222 SM00984 UDP binding domain CH56_3223 SM00448 cheY-homologous receiver domain CH56_3224 SM01321 CH56_3224 CH56_3234 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain CH56_3234 SM00437 Bacterial DNA topoisomerase I DNA-binding domain CH56_3234 SM00493 CH56_3234 CH56_3238 SM00870 CH56_3238 CH56_3242 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain CH56_3245 SM00763 PrkA AAA domain CH56_3253 SM00345 helix_turn_helix gluconate operon transcriptional repressor CH56_3265 SM00060 Fibronectin type 3 domain CH56_3271 SM01040 BRO family, N-terminal domain CH56_3275 SM00232 JAB/MPN domain CH56_3277 SM01321 CH56_3277 CH56_3279 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain CH56_3283 SM00382 ATPases associated with a variety of cellular activities CH56_3293 SM00341 Helicase and RNase D C-terminal CH56_3293 SM00474 3'-5' exonuclease CH56_3297 SM00487 DEAD-like helicases superfamily CH56_3297 SM00491 CH56_3297 CH56_3307 SM00257 Lysin motif CH56_3309 SM00382 ATPases associated with a variety of cellular activities CH56_3311 SM00382 ATPases associated with a variety of cellular activities CH56_3312 SM00278 Helix-hairpin-helix DNA-binding motif class 1 CH56_3323 SM00836 DALR anticodon binding domain CH56_3323 SM01016 Arginyl tRNA synthetase N terminal dom CH56_3328 SM00912 haemagglutination activity domain CH56_3337 SM00481 DNA polymerase alpha chain like domain CH56_3350 SM00937 CH56_3350 CH56_3354 SM01400 CH56_3354 CH56_3358 SM01321 CH56_3358 CH56_3361 SM00450 Rhodanese Homology Domain CH56_3368 SM00448 cheY-homologous receiver domain CH56_3368 SM00862 Transcriptional regulatory protein, C terminal CH56_3369 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CH56_3369 SM00387 Histidine kinase-like ATPases CH56_3369 SM00388 His Kinase A (phosphoacceptor) domain CH56_3380 SM00671 Sel1-like repeats. CH56_3382 SM00671 Sel1-like repeats. CH56_3399 SM00345 helix_turn_helix gluconate operon transcriptional repressor CH56_3399 SM00866 CH56_3399 CH56_34 SM00382 ATPases associated with a variety of cellular activities CH56_3411 SM00387 Histidine kinase-like ATPases CH56_3415 SM00382 ATPases associated with a variety of cellular activities CH56_3417 SM00091 PAS domain CH56_3417 SM00382 ATPases associated with a variety of cellular activities CH56_3419 SM00953 CH56_3419 CH56_3426 SM00382 ATPases associated with a variety of cellular activities CH56_3427 SM01321 CH56_3427 CH56_3431 SM00382 ATPases associated with a variety of cellular activities CH56_3432 SM00382 ATPases associated with a variety of cellular activities CH56_3442 SM00363 S4 RNA-binding domain CH56_3447 SM01321 CH56_3447 CH56_3448 SM00347 helix_turn_helix multiple antibiotic resistance protein CH56_345 SM00382 ATPases associated with a variety of cellular activities CH56_3456 SM00479 CH56_3456 CH56_3462 SM00354 helix_turn _helix lactose operon repressor CH56_3473 SM01321 CH56_3473 CH56_3476 SM00382 ATPases associated with a variety of cellular activities CH56_3481 SM00382 ATPases associated with a variety of cellular activities CH56_3487 SM01321 CH56_3487 CH56_3503 SM01321 CH56_3503 CH56_3504 SM00382 ATPases associated with a variety of cellular activities CH56_3508 SM01321 CH56_3508 CH56_3509 SM00411 bacterial (prokaryotic) histone like domain CH56_3510 SM00873 B3/4 domain CH56_3510 SM00874 tRNA synthetase B5 domain CH56_3510 SM00896 Ferredoxin-fold anticodon binding domain CH56_3515 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain CH56_3521 SM00382 ATPases associated with a variety of cellular activities CH56_3535 SM00382 ATPases associated with a variety of cellular activities CH56_3540 SM00644 CH56_3540 CH56_3541 SM00346 helix_turn_helix isocitrate lyase regulation CH56_3550 SM01321 CH56_3550 CH56_3553 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. CH56_3553 SM00245 tail specific protease CH56_3554 SM00945 ProQ/FINO family CH56_3559 SM00972 Spore Coat Protein U domain CH56_3560 SM00972 Spore Coat Protein U domain CH56_3563 SM00972 Spore Coat Protein U domain CH56_3565 SM01022 CH56_3565 CH56_3568 SM00382 ATPases associated with a variety of cellular activities CH56_357 SM00382 ATPases associated with a variety of cellular activities CH56_3572 SM00479 CH56_3572 CH56_3575 SM00849 Metallo-beta-lactamase superfamily CH56_3576 SM00257 Lysin motif CH56_3588 SM00382 ATPases associated with a variety of cellular activities CH56_3588 SM01086 C-terminal, D2-small domain, of ClpB protein CH56_3597 SM00421 helix_turn_helix, Lux Regulon CH56_3601 SM00382 ATPases associated with a variety of cellular activities CH56_3605 SM00926 Molybdopterin oxidoreductase Fe4S4 domain CH56_3634 SM00278 Helix-hairpin-helix DNA-binding motif class 1 CH56_3634 SM00292 breast cancer carboxy-terminal domain CH56_3634 SM00532 Ligase N family CH56_3635 SM00771 ZipA, C-terminal domain (FtsZ-binding) CH56_3642 SM01321 CH56_3642 CH56_3644 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CH56_3644 SM00387 Histidine kinase-like ATPases CH56_3644 SM00388 His Kinase A (phosphoacceptor) domain CH56_3645 SM00448 cheY-homologous receiver domain CH56_3645 SM00862 Transcriptional regulatory protein, C terminal CH56_3647 SM00382 ATPases associated with a variety of cellular activities CH56_3648 SM00450 Rhodanese Homology Domain CH56_3654 SM00327 von Willebrand factor (vWF) type A domain CH56_3656 SM00387 Histidine kinase-like ATPases CH56_3656 SM00388 His Kinase A (phosphoacceptor) domain CH56_3657 SM00448 cheY-homologous receiver domain CH56_3657 SM00862 Transcriptional regulatory protein, C terminal CH56_3660 SM00382 ATPases associated with a variety of cellular activities CH56_3668 SM00364 Leucine-rich repeats, bacterial type CH56_3668 SM00369 Leucine-rich repeats, typical (most populated) subfamily CH56_3670 SM01130 CH56_3670 CH56_3674 SM00869 Autotransporter beta-domain CH56_3680 SM00919 Malic enzyme, NAD binding domain CH56_3680 SM01274 CH56_3680 CH56_3684 SM00926 Molybdopterin oxidoreductase Fe4S4 domain CH56_3687 SM00421 helix_turn_helix, Lux Regulon CH56_3687 SM00448 cheY-homologous receiver domain CH56_3694 SM00382 ATPases associated with a variety of cellular activities CH56_3701 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. CH56_3701 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. CH56_3702 SM00649 Ribosomal protein L11/L12 CH56_3708 SM00663 RNA polymerase I subunit A N-terminus CH56_3709 SM01321 CH56_3709 CH56_371 SM00838 Elongation factor G C-terminus CH56_371 SM00889 Elongation factor G, domain IV CH56_3721 SM00260 Two component signalling adaptor domain CH56_3722 SM00073 Histidine Phosphotransfer domain CH56_3722 SM00260 Two component signalling adaptor domain CH56_3722 SM00387 Histidine kinase-like ATPases CH56_3722 SM01231 CH56_3722 CH56_3727 SM00831 Cation transporter/ATPase, N-terminus CH56_3729 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CH56_3729 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CH56_3729 SM00319 Homologues of the ligand binding domain of Tar CH56_3732 SM00357 Cold shock protein domain CH56_3733 SM01038 Beta galactosidase small chain CH56_3734 SM00829 Enoylreductase CH56_3736 SM00344 helix_turn_helix ASNC type CH56_3743 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) CH56_3743 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CH56_3745 SM00354 helix_turn _helix lactose operon repressor CH56_3746 SM01329 CH56_3746 CH56_3753 SM00448 cheY-homologous receiver domain CH56_3753 SM00862 Transcriptional regulatory protein, C terminal CH56_3754 SM00387 Histidine kinase-like ATPases CH56_3754 SM00388 His Kinase A (phosphoacceptor) domain CH56_3755 SM00558 A domain family that is part of the cupin metalloenzyme superfamily. CH56_3760 SM00382 ATPases associated with a variety of cellular activities CH56_3762 SM00487 DEAD-like helicases superfamily CH56_3762 SM00490 helicase superfamily c-terminal domain CH56_3762 SM00982 CH56_3762 CH56_3762 SM01058 CarD-like/TRCF domain CH56_3774 SM00382 ATPases associated with a variety of cellular activities CH56_3785 SM00382 ATPases associated with a variety of cellular activities CH56_3787 SM00493 CH56_3787 CH56_3788 SM00387 Histidine kinase-like ATPases CH56_38 SM00732 Likely ribonuclease with RNase H fold. CH56_3805 SM00382 ATPases associated with a variety of cellular activities CH56_3808 SM00957 SecA DEAD-like domain CH56_3808 SM00958 SecA preprotein cross-linking domain CH56_3812 SM00864 Tubulin/FtsZ family, GTPase domain CH56_3812 SM00865 Tubulin/FtsZ family, C-terminal domain CH56_3813 SM00842 Cell division protein FtsA CH56_3828 SM00354 helix_turn _helix lactose operon repressor CH56_3829 SM01321 CH56_3829 CH56_3835 SM01321 CH56_3835 CH56_3836 SM00917 LeuA allosteric (dimerisation) domain CH56_3837 SM01329 CH56_3837 CH56_384 SM00382 ATPases associated with a variety of cellular activities CH56_3845 SM00382 ATPases associated with a variety of cellular activities CH56_3847 SM00486 DNA polymerase type-B family CH56_3848 SM00487 DEAD-like helicases superfamily CH56_3848 SM00490 helicase superfamily c-terminal domain CH56_3849 SM01321 CH56_3849 CH56_3863 SM00382 ATPases associated with a variety of cellular activities CH56_3868 SM00825 Beta-ketoacyl synthase CH56_3876 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. CH56_3882 SM00382 ATPases associated with a variety of cellular activities CH56_3882 SM01086 C-terminal, D2-small domain, of ClpB protein CH56_389 SM00382 ATPases associated with a variety of cellular activities CH56_3899 SM00382 ATPases associated with a variety of cellular activities CH56_390 SM00062 Bacterial periplasmic substrate-binding proteins CH56_3902 SM00852 Probable molybdopterin binding domain CH56_3904 SM00382 ATPases associated with a variety of cellular activities CH56_3911 SM00829 Enoylreductase CH56_3918 SM00382 ATPases associated with a variety of cellular activities CH56_3920 SM01321 CH56_3920 CH56_3922 SM00919 Malic enzyme, NAD binding domain CH56_3923 SM01274 CH56_3923 CH56_3931 SM01321 CH56_3931 CH56_3941 SM00938 Nitrogen regulatory protein P-II CH56_3942 SM00382 ATPases associated with a variety of cellular activities CH56_3943 SM00382 ATPases associated with a variety of cellular activities CH56_3944 SM00344 helix_turn_helix ASNC type CH56_3952 SM01321 CH56_3952 CH56_3953 SM00411 bacterial (prokaryotic) histone like domain CH56_3954 SM00382 ATPases associated with a variety of cellular activities CH56_3954 SM00464 Found in ATP-dependent protease La (LON) CH56_3955 SM00382 ATPases associated with a variety of cellular activities CH56_3955 SM00994 ClpX C4-type zinc finger CH56_3955 SM01086 C-terminal, D2-small domain, of ClpB protein CH56_3968 SM01321 CH56_3968 CH56_397 SM00100 Cyclic nucleotide-monophosphate binding domain CH56_397 SM00419 helix_turn_helix, cAMP Regulatory protein CH56_3973 SM00981 CH56_3973 CH56_3976 SM00861 Transketolase, pyrimidine binding domain CH56_3977 SM01321 CH56_3977 CH56_3981 SM00382 ATPases associated with a variety of cellular activities CH56_3982 SM00382 ATPases associated with a variety of cellular activities CH56_3996 SM00046 Diacylglycerol kinase catalytic domain (presumed) CH56_3999 SM00448 cheY-homologous receiver domain CH56_3999 SM00862 Transcriptional regulatory protein, C terminal CH56_4000 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CH56_4000 SM00387 Histidine kinase-like ATPases CH56_4000 SM00388 His Kinase A (phosphoacceptor) domain CH56_4005 SM00382 ATPases associated with a variety of cellular activities CH56_4006 SM00345 helix_turn_helix gluconate operon transcriptional repressor CH56_4012 SM00924 MgtE intracellular N domain CH56_4017 SM00382 ATPases associated with a variety of cellular activities CH56_4026 SM01321 CH56_4026 CH56_4035 SM01130 CH56_4035 CH56_4037 SM01321 CH56_4037 CH56_404 SM00354 helix_turn _helix lactose operon repressor CH56_4049 SM00382 ATPases associated with a variety of cellular activities CH56_4054 SM00382 ATPases associated with a variety of cellular activities CH56_4056 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs CH56_4056 SM00475 5'-3' exonuclease CH56_4060 SM01321 CH56_4060 CH56_4070 SM01321 CH56_4070 CH56_4080 SM01350 CH56_4080 CH56_4089 SM00382 ATPases associated with a variety of cellular activities CH56_4091 SM01006 Siderophore biosynthesis protein domain CH56_4095 SM01091 Transporter associated domain CH56_4101 SM01321 CH56_4101 CH56_4108 SM00851 MGS-like domain CH56_4110 SM00881 CoA binding domain CH56_4111 SM00992 Hemimethylated DNA-binding protein YccV like CH56_4112 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase CH56_4122 SM00382 ATPases associated with a variety of cellular activities CH56_4131 SM00925 MltA specific insert domain CH56_4134 SM00646 CH56_4134 CH56_4147 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. CH56_4149 SM00927 DNA mismatch repair enzyme MutH CH56_4154 SM00563 Phosphate acyltransferases CH56_4157 SM00354 helix_turn _helix lactose operon repressor CH56_4161 SM00849 Metallo-beta-lactamase superfamily CH56_4162 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CH56_4162 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CH56_4162 SM00319 Homologues of the ligand binding domain of Tar CH56_4165 SM00862 Transcriptional regulatory protein, C terminal CH56_4176 SM00382 ATPases associated with a variety of cellular activities CH56_4180 SM00947 Carbonic anhydrase CH56_4183 SM00869 Autotransporter beta-domain CH56_4185 SM00382 ATPases associated with a variety of cellular activities CH56_4187 SM00642 Alpha-amylase domain CH56_4191 SM00091 PAS domain CH56_4191 SM00387 Histidine kinase-like ATPases CH56_4191 SM00388 His Kinase A (phosphoacceptor) domain CH56_4192 SM00448 cheY-homologous receiver domain CH56_4192 SM00862 Transcriptional regulatory protein, C terminal CH56_4204 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase CH56_4211 SM00232 JAB/MPN domain CH56_4219 SM00475 5'-3' exonuclease CH56_4224 SM01321 CH56_4224 CH56_4226 SM00481 DNA polymerase alpha chain like domain CH56_4235 SM00155 Phospholipase D. Active site motifs. CH56_4239 SM00857 Resolvase, N terminal domain CH56_4243 SM00470 ParB-like nuclease domain CH56_4244 SM00382 ATPases associated with a variety of cellular activities CH56_4253 SM00470 ParB-like nuclease domain CH56_4255 SM00382 ATPases associated with a variety of cellular activities CH56_4256 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs CH56_4266 SM00062 Bacterial periplasmic substrate-binding proteins CH56_4275 SM00244 prohibitin homologues CH56_4279 SM01321 CH56_4279 CH56_4288 SM00487 DEAD-like helicases superfamily CH56_4288 SM00490 helicase superfamily c-terminal domain CH56_4289 SM00470 ParB-like nuclease domain CH56_4290 SM00470 ParB-like nuclease domain CH56_4291 SM00382 ATPases associated with a variety of cellular activities CH56_43 SM00731 SprT homologues. CH56_430 SM00363 S4 RNA-binding domain CH56_4300 SM00635 Bacterial Ig-like domain 2 CH56_4306 SM00635 Bacterial Ig-like domain 2 CH56_4307 SM00857 Resolvase, N terminal domain CH56_4326 SM00220 Serine/Threonine protein kinases, catalytic domain CH56_4329 SM00194 Protein tyrosine phosphatase, catalytic domain CH56_4329 SM00404 Protein tyrosine phosphatase, catalytic domain motif CH56_433 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CH56_433 SM00387 Histidine kinase-like ATPases CH56_433 SM00388 His Kinase A (phosphoacceptor) domain CH56_434 SM00448 cheY-homologous receiver domain CH56_434 SM00862 Transcriptional regulatory protein, C terminal CH56_4345 SM00342 helix_turn_helix, arabinose operon control protein CH56_4354 SM00382 ATPases associated with a variety of cellular activities CH56_436 SM00316 Ribosomal protein S1-like RNA-binding domain CH56_436 SM00732 Likely ribonuclease with RNase H fold. CH56_4368 SM00364 Leucine-rich repeats, bacterial type CH56_437 SM00899 CH56_437 CH56_4380 SM00470 ParB-like nuclease domain CH56_4396 SM00530 Helix-turn-helix XRE-family like proteins CH56_4398 SM00382 ATPases associated with a variety of cellular activities CH56_448 SM00421 helix_turn_helix, Lux Regulon CH56_449 SM00450 Rhodanese Homology Domain CH56_451 SM00420 helix_turn_helix, Deoxyribose operon repressor CH56_451 SM01134 CH56_451 CH56_467 SM00926 Molybdopterin oxidoreductase Fe4S4 domain CH56_470 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CH56_470 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CH56_470 SM01358 CH56_470 CH56_488 SM00642 Alpha-amylase domain CH56_49 SM00861 Transketolase, pyrimidine binding domain CH56_50 SM01321 CH56_50 CH56_500 SM00382 ATPases associated with a variety of cellular activities CH56_509 SM01321 CH56_509 CH56_511 SM00487 DEAD-like helicases superfamily CH56_511 SM00490 helicase superfamily c-terminal domain CH56_513 SM00354 helix_turn _helix lactose operon repressor CH56_514 SM01321 CH56_514 CH56_515 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain CH56_527 SM01011 Aminopeptidase P, N-terminal domain CH56_53 SM00354 helix_turn _helix lactose operon repressor CH56_54 SM01321 CH56_54 CH56_542 SM00448 cheY-homologous receiver domain CH56_542 SM00862 Transcriptional regulatory protein, C terminal CH56_543 SM00387 Histidine kinase-like ATPases CH56_543 SM00388 His Kinase A (phosphoacceptor) domain CH56_549 SM00937 CH56_549 CH56_555 SM00530 Helix-turn-helix XRE-family like proteins CH56_557 SM00530 Helix-turn-helix XRE-family like proteins CH56_558 SM00778 Zinc-binding domain of primase-helicase CH56_558 SM00885 D5 N terminal like CH56_57 SM00354 helix_turn _helix lactose operon repressor CH56_578 SM00382 ATPases associated with a variety of cellular activities CH56_579 SM00382 ATPases associated with a variety of cellular activities CH56_586 SM01321 CH56_586 CH56_590 SM00382 ATPases associated with a variety of cellular activities CH56_596 SM00859 Semialdehyde dehydrogenase, NAD binding domain CH56_609 SM00382 ATPases associated with a variety of cellular activities CH56_619 SM00912 haemagglutination activity domain CH56_620 SM01018 B12 binding domain CH56_621 SM00346 helix_turn_helix isocitrate lyase regulation CH56_630 SM00382 ATPases associated with a variety of cellular activities CH56_639 SM00342 helix_turn_helix, arabinose operon control protein CH56_644 SM00387 Histidine kinase-like ATPases CH56_644 SM00388 His Kinase A (phosphoacceptor) domain CH56_644 SM00448 cheY-homologous receiver domain CH56_645 SM00421 helix_turn_helix, Lux Regulon CH56_645 SM00448 cheY-homologous receiver domain CH56_652 SM00382 ATPases associated with a variety of cellular activities CH56_660 SM00116 Domain in cystathionine beta-synthase and other proteins. CH56_660 SM01091 Transporter associated domain CH56_677 SM01321 CH56_677 CH56_679 SM00387 Histidine kinase-like ATPases CH56_680 SM00388 His Kinase A (phosphoacceptor) domain CH56_681 SM00448 cheY-homologous receiver domain CH56_681 SM00862 Transcriptional regulatory protein, C terminal CH56_684 SM01103 CH56_684 CH56_686 SM00382 ATPases associated with a variety of cellular activities CH56_693 SM00316 Ribosomal protein S1-like RNA-binding domain CH56_693 SM00322 K homology RNA-binding domain CH56_697 SM01387 CH56_697 CH56_700 SM00316 Ribosomal protein S1-like RNA-binding domain CH56_700 SM00322 K homology RNA-binding domain CH56_701 SM00028 Tetratricopeptide repeats CH56_702 SM00487 DEAD-like helicases superfamily CH56_702 SM00490 helicase superfamily c-terminal domain CH56_704 SM00530 Helix-turn-helix XRE-family like proteins CH56_720 SM00382 ATPases associated with a variety of cellular activities CH56_723 SM00859 Semialdehyde dehydrogenase, NAD binding domain CH56_724 SM00849 Metallo-beta-lactamase superfamily CH56_725 SM00072 Guanylate kinase homologues. CH56_727 SM00382 ATPases associated with a variety of cellular activities CH56_728 SM00382 ATPases associated with a variety of cellular activities CH56_73 SM00420 helix_turn_helix, Deoxyribose operon repressor CH56_73 SM01134 CH56_73 CH56_733 SM00345 helix_turn_helix gluconate operon transcriptional repressor CH56_733 SM00866 CH56_733 CH56_737 SM00382 ATPases associated with a variety of cellular activities CH56_738 SM00382 ATPases associated with a variety of cellular activities CH56_75 SM01321 CH56_75 CH56_757 SM00382 ATPases associated with a variety of cellular activities CH56_763 SM00382 ATPases associated with a variety of cellular activities CH56_764 SM00382 ATPases associated with a variety of cellular activities CH56_766 SM00052 Putative diguanylate phosphodiesterase CH56_766 SM00267 diguanylate cyclase CH56_775 SM00052 Putative diguanylate phosphodiesterase CH56_779 SM00869 Autotransporter beta-domain CH56_78 SM01323 CH56_78 CH56_790 SM00235 Zinc-dependent metalloprotease CH56_791 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase CH56_795 SM01321 CH56_795 CH56_798 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CH56_798 SM00387 Histidine kinase-like ATPases CH56_798 SM00388 His Kinase A (phosphoacceptor) domain CH56_798 SM00448 cheY-homologous receiver domain CH56_799 SM00382 ATPases associated with a variety of cellular activities CH56_806 SM00448 cheY-homologous receiver domain CH56_806 SM00862 Transcriptional regulatory protein, C terminal CH56_809 SM00354 helix_turn _helix lactose operon repressor CH56_816 SM00859 Semialdehyde dehydrogenase, NAD binding domain CH56_821 SM00257 Lysin motif CH56_821 SM00634 Bacterial Ig-like domain (group 1) CH56_823 SM00642 Alpha-amylase domain CH56_824 SM00642 Alpha-amylase domain CH56_83 SM01321 CH56_83 CH56_832 SM00382 ATPases associated with a variety of cellular activities CH56_834 SM00912 haemagglutination activity domain CH56_838 SM00387 Histidine kinase-like ATPases CH56_839 SM00421 helix_turn_helix, Lux Regulon CH56_839 SM00448 cheY-homologous receiver domain CH56_853 SM00382 ATPases associated with a variety of cellular activities CH56_855 SM00530 Helix-turn-helix XRE-family like proteins CH56_862 SM00342 helix_turn_helix, arabinose operon control protein CH56_864 SM00382 ATPases associated with a variety of cellular activities CH56_88 SM00382 ATPases associated with a variety of cellular activities CH56_881 SM00387 Histidine kinase-like ATPases CH56_881 SM00433 TopoisomeraseII CH56_883 SM00480 DNA polymerase III beta subunit CH56_884 SM00382 ATPases associated with a variety of cellular activities CH56_884 SM00760 Bacterial dnaA protein helix-turn-helix domain CH56_888 SM01234 CH56_888 CH56_898 SM00062 Bacterial periplasmic substrate-binding proteins CH56_901 SM00382 ATPases associated with a variety of cellular activities CH56_908 SM00382 ATPases associated with a variety of cellular activities CH56_917 SM01228 CH56_917 CH56_919 SM00344 helix_turn_helix ASNC type CH56_921 SM00327 von Willebrand factor (vWF) type A domain CH56_922 SM00382 ATPases associated with a variety of cellular activities CH56_928 SM00345 helix_turn_helix gluconate operon transcriptional repressor CH56_928 SM00895 CH56_928 CH56_939 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs CH56_939 SM00474 3'-5' exonuclease CH56_939 SM00475 5'-3' exonuclease CH56_939 SM00482 DNA polymerase A domain CH56_942 SM00729 Elongator protein 3, MiaB family, Radical SAM CH56_943 SM00382 ATPases associated with a variety of cellular activities CH56_943 SM00448 cheY-homologous receiver domain CH56_944 SM00091 PAS domain CH56_944 SM00387 Histidine kinase-like ATPases CH56_944 SM00388 His Kinase A (phosphoacceptor) domain CH56_945 SM01321 CH56_945 CH56_946 SM01230 CH56_946 CH56_951 SM00382 ATPases associated with a variety of cellular activities CH56_956 SM00487 DEAD-like helicases superfamily CH56_956 SM00490 helicase superfamily c-terminal domain CH56_958 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CH56_958 SM00954 Region found in RelA / SpoT proteins CH56_959 SM01409 CH56_959 CH56_960 SM00072 Guanylate kinase homologues. CH56_961 SM00532 Ligase N family CH56_965 SM01321 CH56_965 CH56_973 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain CH56_973 SM01232 CH56_973 CH56_98 SM00382 ATPases associated with a variety of cellular activities CH56_98 SM00930 CH56_98 CH56_981 SM00829 Enoylreductase CH56_986 SM00450 Rhodanese Homology Domain CH56_990 SM00971 Serine acetyltransferase, N-terminal CH56_992 SM00342 helix_turn_helix, arabinose operon control protein CH56_994 SM00382 ATPases associated with a variety of cellular activities CH56_995 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CH56_995 SM00387 Histidine kinase-like ATPases CH56_995 SM00388 His Kinase A (phosphoacceptor) domain CH56_996 SM00448 cheY-homologous receiver domain CH56_996 SM00862 Transcriptional regulatory protein, C terminal