YPA_0001 IPR001094 Flavodoxin YPA_0001 IPR008254 Flavodoxin/nitric oxide synthase YPA_0001 IPR029039 Flavoprotein-like YPA_0002 IPR000485 AsnC-type HTH domain YPA_0002 IPR011008 Dimeric alpha-beta barrel YPA_0002 IPR019887 Transcription regulator AsnC-type, C-terminal YPA_0002 IPR019888 Transcription regulator AsnC-type YPA_0002 IPR036388 YPA_0002 YPA_0002 IPR036390 YPA_0002 YPA_0003 IPR004618 Aspartate--ammonia ligase YPA_0004 IPR002035 von Willebrand factor, type A YPA_0004 IPR008912 Uncharacterised protein family CoxE-like YPA_0004 IPR023481 Uncharacterised protein family ViaA YPA_0004 IPR036465 YPA_0004 YPA_0005 IPR003593 AAA+ ATPase domain YPA_0005 IPR011704 ATPase, dynein-related, AAA domain YPA_0005 IPR022547 ATPase, RavA, C-terminal YPA_0005 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPA_0006 IPR001584 Integrase, catalytic core YPA_0006 IPR006120 Resolvase, HTH domain YPA_0006 IPR009057 Homeodomain-like YPA_0006 IPR012337 Ribonuclease H-like domain YPA_0007 IPR001270 ClpA/B family YPA_0007 IPR002611 IstB-like ATP-binding protein YPA_0007 IPR003593 AAA+ ATPase domain YPA_0007 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPA_0007 IPR028350 DNA replication protein DnaC/insertion sequence putative ATP-binding protein YPA_0009 IPR003855 K+ potassium transporter YPA_0009 IPR023051 Potassium uptake protein, low affinity, Kup YPA_0010 IPR007721 D-ribose pyranase RbsD/L-fucose mutarotase FucU YPA_0010 IPR023064 D-ribose pyranase YPA_0010 IPR023750 RbsD-like domain YPA_0011 IPR002139 Ribokinase YPA_0011 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site YPA_0011 IPR011611 Carbohydrate kinase PfkB YPA_0011 IPR011877 Ribokinase, bacterial YPA_0011 IPR029056 Ribokinase-like YPA_0013 IPR004638 Drug resistance transporter EmrB/QacA subfamily YPA_0013 IPR011701 Major facilitator superfamily YPA_0013 IPR036259 YPA_0013 YPA_0014 IPR000524 Transcription regulator HTH, GntR YPA_0014 IPR008920 Transcription regulator FadR/GntR, C-terminal YPA_0014 IPR011711 GntR, C-terminal YPA_0014 IPR036388 YPA_0014 YPA_0014 IPR036390 YPA_0014 YPA_0015 IPR005697 Homoserine O-succinyltransferase YPA_0015 IPR029062 Class I glutamine amidotransferase-like YPA_0015 IPR033752 YPA_0015 YPA_0017 IPR001465 Malate synthase YPA_0017 IPR006252 Malate synthase A YPA_0017 IPR011076 Malate synthase-like YPA_0018 IPR006254 Isocitrate lyase YPA_0018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain YPA_0018 IPR018523 Isocitrate lyase/phosphorylmutase, conserved site YPA_0019 IPR010452 Isocitrate dehydrogenase kinasephosphatase YPA_0020 IPR014757 Transcription regulator IclR, C-terminal YPA_0020 IPR029016 GAF domain-like YPA_0021 IPR000489 Pterin-binding YPA_0021 IPR003726 Homocysteine S-methyltransferase YPA_0021 IPR003759 Cobalamin (vitamin B12)-binding module, cap domain YPA_0021 IPR004223 Vitamin B12-dependent methionine synthase, activation domain YPA_0021 IPR006158 Cobalamin (vitamin B12)-binding domain YPA_0021 IPR011005 Dihydropteroate synthase-like YPA_0021 IPR011822 Cobalamin-dependent methionine synthase YPA_0021 IPR036589 YPA_0021 YPA_0021 IPR036594 YPA_0021 YPA_0021 IPR036724 YPA_0021 YPA_0021 IPR037010 YPA_0021 YPA_0022 IPR008638 Filamentous haemagglutinin, N-terminal YPA_0022 IPR011050 Pectin lyase fold/virulence factor YPA_0022 IPR012334 Pectin lyase fold YPA_0022 IPR025157 Haemagluttinin repeat YPA_0023 IPR005565 Haemolysin activator HlyB YPA_0023 IPR013686 Polypeptide-transport-associated, ShlB-type YPA_0023 IPR027282 Two partner secretion pathway transporter YPA_0023 IPR035251 YPA_0023 YPA_0025 IPR001048 Aspartate/glutamate/uridylate kinase YPA_0025 IPR001341 Aspartate kinase domain YPA_0025 IPR005260 Aspartate kinase, monofunctional class YPA_0025 IPR018042 Aspartate kinase, conserved site YPA_0025 IPR036393 YPA_0025 YPA_0026 IPR001672 Phosphoglucose isomerase (PGI) YPA_0026 IPR018189 Phosphoglucose isomerase, conserved site YPA_0026 IPR023096 Phosphoglucose isomerase, C-terminal YPA_0027 IPR009315 Phosphate-starvation-induced PsiE YPA_0027 IPR020948 Phosphate-starvation-induced PsiE-like YPA_0028 IPR000515 MetI-like domain YPA_0028 IPR035906 YPA_0028 YPA_0029 IPR000515 MetI-like domain YPA_0029 IPR029345 Maltose transport system permease protein MalF, P2 domain YPA_0029 IPR035277 YPA_0029 YPA_0029 IPR035906 YPA_0029 YPA_0030 IPR006059 Bacterial extracellular solute-binding, family 1 YPA_0030 IPR006060 Maltose binding protein YPA_0030 IPR006061 Bacterial extracellular solute-binding family 1, conserved site YPA_0032 IPR003439 ABC transporter-like YPA_0032 IPR003593 AAA+ ATPase domain YPA_0032 IPR008995 Molybdate/tungstate binding, C-terminal YPA_0032 IPR013611 Transport-associated OB, type 2 YPA_0032 IPR017871 ABC transporter, conserved site YPA_0032 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPA_0033 IPR003192 Porin, LamB type YPA_0033 IPR023738 Maltoporin YPA_0033 IPR036998 YPA_0033 YPA_0034 IPR010794 Maltose operon periplasmic YPA_0036 IPR008514 Type VI secretion system effector, Hcp YPA_0036 IPR036624 YPA_0036 YPA_0037 IPR008312 Uncharacterised conserved protein UCP028301 YPA_0038 IPR010269 Protein of unknown function DUF877 YPA_0039 IPR007048 GpW/Gp25/anti-adapter protein IraD YPA_0039 IPR017737 Type VI secretion system, lysozyme-related protein YPA_0040 IPR010272 Type VI secretion system, VCA0110 YPA_0041 IPR001584 Integrase, catalytic core YPA_0041 IPR012337 Ribonuclease H-like domain YPA_0041 IPR025948 HTH-like domain YPA_0041 IPR036397 YPA_0041 YPA_0042 IPR009057 Homeodomain-like YPA_0042 IPR010921 Trp repressor/replication initiator YPA_0043 IPR000589 Ribosomal protein S15 YPA_0043 IPR005290 Ribosomal protein S15, bacterial-type YPA_0043 IPR009068 S15/NS1, RNA-binding YPA_0044 IPR002501 Pseudouridine synthase II YPA_0044 IPR014780 tRNA pseudouridine synthase II, TruB YPA_0044 IPR015240 tRNA pseudouridine synthase II, TruB, subfamily 1, C-terminal YPA_0044 IPR015947 PUA-like domain YPA_0044 IPR020103 Pseudouridine synthase, catalytic domain YPA_0044 IPR032819 YPA_0044 YPA_0044 IPR036974 YPA_0044 YPA_0045 IPR000238 Ribosome-binding factor A YPA_0045 IPR015946 K homology domain-like, alpha/beta YPA_0045 IPR020053 Ribosome-binding factor A, conserved site YPA_0045 IPR023799 Ribosome-binding factor A domain YPA_0046 IPR000178 Translation initiation factor aIF-2, bacterial-like YPA_0046 IPR000795 Elongation factor, GTP-binding domain YPA_0046 IPR004161 Translation elongation factor EFTu/EF1A, domain 2 YPA_0046 IPR005225 Small GTP-binding protein domain YPA_0046 IPR006847 Translation initiation factor IF-2, N-terminal YPA_0046 IPR009000 Translation protein, beta-barrel domain YPA_0046 IPR009061 DNA binding domain, putative YPA_0046 IPR013575 Initiation factor 2 associated domain, bacterial YPA_0046 IPR023115 Translation initiation factor IF- 2, domain 3 YPA_0046 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPA_0046 IPR036925 YPA_0046 YPA_0047 IPR004087 K Homology domain YPA_0047 IPR009019 K homology domain, prokaryotic type YPA_0047 IPR010213 Transcription termination factor NusA YPA_0047 IPR010214 Transcription termination factor NusA, C-terminal duplication YPA_0047 IPR010995 DNA repair Rad51/transcription factor NusA, alpha-helical YPA_0047 IPR012340 Nucleic acid-binding, OB-fold YPA_0047 IPR013735 Transcription factor NusA, N-terminal YPA_0047 IPR015946 K homology domain-like, alpha/beta YPA_0047 IPR022967 RNA-binding domain, S1 YPA_0047 IPR025249 KH domain, NusA-like YPA_0047 IPR030842 YPA_0047 YPA_0047 IPR036555 YPA_0047 YPA_0048 IPR003728 Ribosome maturation factor RimP YPA_0048 IPR028989 Ribosome maturation factor RimP, N-terminal YPA_0048 IPR028998 Ribosome maturation factor RimP, C-terminal YPA_0048 IPR035956 YPA_0048 YPA_0048 IPR036847 YPA_0048 YPA_0049 IPR004692 Preprotein translocase SecG subunit YPA_0050 IPR005841 Alpha-D-phosphohexomutase superfamily YPA_0050 IPR005843 Alpha-D-phosphohexomutase, C-terminal YPA_0050 IPR005844 Alpha-D-phosphohexomutase, alpha/beta/alpha domain I YPA_0050 IPR005845 Alpha-D-phosphohexomutase, alpha/beta/alpha domain II YPA_0050 IPR005846 Alpha-D-phosphohexomutase, alpha/beta/alpha domain III YPA_0050 IPR006352 Phosphoglucosamine mutase YPA_0050 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III YPA_0050 IPR016066 Alpha-D-phosphohexomutase, conserved site YPA_0050 IPR036900 YPA_0050 YPA_0051 IPR000489 Pterin-binding YPA_0051 IPR006390 Dihydropteroate synthase YPA_0051 IPR011005 Dihydropteroate synthase-like YPA_0052 IPR000642 Peptidase M41 YPA_0052 IPR003593 AAA+ ATPase domain YPA_0052 IPR003959 ATPase, AAA-type, core YPA_0052 IPR003960 ATPase, AAA-type, conserved site YPA_0052 IPR005936 Peptidase, FtsH YPA_0052 IPR011546 Peptidase M41, FtsH extracellular YPA_0052 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPA_0052 IPR037219 YPA_0052 YPA_0053 IPR002877 Ribosomal RNA methyltransferase FtsJ domain YPA_0053 IPR004512 Ribosomal RNA methyltransferase E, gammaproteobacteria YPA_0053 IPR015507 Ribosomal RNA large subunit methyltransferase E YPA_0053 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase-like YPA_0054 IPR001890 RNA-binding, CRM domain YPA_0054 IPR017924 RNA-binding protein YhbY YPA_0054 IPR035920 YPA_0054 YPA_0055 IPR001437 Transcription elongation factor, GreA/GreB, C-terminal YPA_0055 IPR006359 Transcription elongation factor GreA YPA_0055 IPR018151 Transcription elongation factor, GreA/GreB, conserved site YPA_0055 IPR022691 Transcription elongation factor, GreA/GreB, N-terminal YPA_0055 IPR023459 Transcription elongation factor GreA/GreB family YPA_0055 IPR028624 Transcription elongation factor GreA/GreB YPA_0055 IPR036805 YPA_0055 YPA_0055 IPR036953 YPA_0055 YPA_0056 IPR000667 Peptidase S13, D-Ala-D-Ala carboxypeptidase C YPA_0056 IPR012338 Beta-lactamase/transpeptidase-like YPA_0057 IPR001789 Signal transduction response regulator, receiver domain YPA_0057 IPR001867 Signal transduction response regulator, C-terminal YPA_0057 IPR011006 CheY-like superfamily YPA_0057 IPR036388 YPA_0057 YPA_0058 IPR003594 Histidine kinase-like ATPase, C-terminal domain YPA_0058 IPR003661 Signal transduction histidine kinase EnvZ-like, dimerisation/phosphoacceptor domain YPA_0058 IPR004358 Signal transduction histidine kinase-related protein, C-terminal YPA_0058 IPR036097 YPA_0058 YPA_0058 IPR036890 YPA_0058 YPA_0059 IPR006073 GTP binding domain YPA_0059 IPR006074 GTP1/OBG, conserved site YPA_0059 IPR006169 GTP1/OBG domain YPA_0059 IPR014100 GTP-binding protein Obg/CgtA YPA_0059 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPA_0059 IPR035101 YPA_0059 YPA_0059 IPR036726 YPA_0059 YPA_0060 IPR000620 Drug/metabolite transporter YPA_0061 IPR001684 Ribosomal protein L27 YPA_0061 IPR018261 Ribosomal protein L27, conserved site YPA_0062 IPR001787 Ribosomal protein L21 YPA_0062 IPR018258 Ribosomal protein L21, conserved site YPA_0062 IPR028909 Ribosomal protein L21-like YPA_0062 IPR036164 YPA_0062 YPA_0063 IPR000092 Polyprenyl synthetase YPA_0063 IPR008949 Terpenoid synthase YPA_0063 IPR033749 YPA_0063 YPA_0064 IPR003314 Transposase MuA/Repressor CI, DNA-binding YPA_0064 IPR009061 DNA binding domain, putative YPA_0064 IPR036388 YPA_0064 YPA_0065 IPR010982 Lambda repressor-like, DNA-binding domain YPA_0065 IPR038722 YPA_0065 YPA_0066 IPR001236 Lactate/malate dehydrogenase, N-terminal YPA_0066 IPR001252 Malate dehydrogenase, active site YPA_0066 IPR001557 L-lactate/malate dehydrogenase YPA_0066 IPR010097 Malate dehydrogenase, type 1 YPA_0066 IPR015955 Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal YPA_0066 IPR022383 Lactate/malate dehydrogenase, C-terminal YPA_0066 IPR023958 Malate dehydrogenase, type 1, bacterial YPA_0066 IPR036291 YPA_0066 YPA_0067 IPR001669 Arginine repressor YPA_0067 IPR020899 Arginine repressor, C-terminal YPA_0067 IPR020900 Arginine repressor, DNA-binding domain YPA_0067 IPR036251 YPA_0067 YPA_0067 IPR036388 YPA_0067 YPA_0067 IPR036390 YPA_0067 YPA_0068 IPR010854 Domain of unknown function DUF1471 YPA_0068 IPR025543 Dodecin-like YPA_0068 IPR036275 YPA_0068 YPA_0069 IPR000713 Mur ligase, N-terminal YPA_0069 IPR004101 Mur ligase, C-terminal YPA_0069 IPR005757 Murein peptide ligase YPA_0069 IPR013221 Mur ligase, central YPA_0069 IPR036565 YPA_0069 YPA_0069 IPR036615 YPA_0069 YPA_0070 IPR000146 Fructose-1,6-bisphosphatase class 1/Sedoheputulose-1,7-bisphosphatase YPA_0070 IPR020548 Fructose-1,6-bisphosphatase, active site YPA_0070 IPR028343 Fructose-1,6-bisphosphatase YPA_0070 IPR033391 YPA_0070 YPA_0071 IPR008162 Inorganic pyrophosphatase YPA_0071 IPR036649 YPA_0071 YPA_0072 IPR009288 AIG2-like YPA_0072 IPR036568 YPA_0072 YPA_0073 IPR007452 Protein of unknown function DUF490 YPA_0074 IPR000184 Bacterial surface antigen (D15) YPA_0074 IPR010827 Surface antigen variable number YPA_0074 IPR035243 YPA_0074 YPA_0075 IPR002569 Peptide methionine sulphoxide reductase MsrA YPA_0075 IPR036509 YPA_0075 YPA_0076 IPR000644 CBS domain YPA_0076 IPR002550 Domain of unknown function DUF21 YPA_0076 IPR005170 Transporter-associated domain YPA_0076 IPR016169 CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2 YPA_0076 IPR036318 YPA_0076 YPA_0077 IPR009491 Protein of unknown function DUF1107 YPA_0078 IPR006513 Conserved hypothetical protein CHP01626, YtfJ YPA_0078 IPR036249 YPA_0078 YPA_0079 IPR000760 Inositol monophosphatase YPA_0079 IPR006240 3(2),5 -bisphosphate nucleotidase, bacterial YPA_0079 IPR020550 Inositol monophosphatase, conserved site YPA_0079 IPR020583 Inositol monophosphatase, metal-binding site YPA_0080 IPR004843 Calcineurin-like phosphoesterase domain, apaH type YPA_0080 IPR006146 5'-Nucleotidase, conserved site YPA_0080 IPR006179 5'-Nucleotidase/apyrase YPA_0080 IPR006294 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase YPA_0080 IPR008334 5'-Nucleotidase, C-terminal YPA_0080 IPR029052 Metallo-dependent phosphatase-like YPA_0080 IPR036907 YPA_0080 YPA_0081 IPR012312 Haemerythrin/HHE cation-binding motif YPA_0081 IPR019903 Repair of iron centres family YPA_0081 IPR023742 Iron-sulfur cluster repair protein YftE YPA_0082 IPR000774 Peptidyl-prolyl cis-trans isomerase, FKBP-type, N-terminal YPA_0082 IPR001179 Peptidyl-prolyl cis-trans isomerase, FKBP-type, domain YPA_0082 IPR036944 YPA_0082 YPA_0083 IPR007340 Opacity-associated protein A YPA_0083 IPR013731 Opacity-associated protein A, N-terminal YPA_0084 IPR022231 Protein of unknown function DUF3757 YPA_0085 IPR002686 Transposase IS200-like YPA_0085 IPR036515 YPA_0085 YPA_0086 IPR009027 Ribosomal protein L9/RNase H1, N-terminal YPA_0086 IPR020069 Ribosomal protein L9, C-terminal YPA_0086 IPR020070 Ribosomal protein L9, N-terminal YPA_0086 IPR020594 Ribosomal protein L9, bacteria/chloroplast YPA_0086 IPR036791 YPA_0086 YPA_0086 IPR036935 YPA_0086 YPA_0087 IPR001648 Ribosomal protein S18 YPA_0087 IPR018275 Ribosomal protein S18, conserved site YPA_0087 IPR036870 YPA_0087 YPA_0088 IPR000424 Primosome PriB/single-strand DNA-binding YPA_0088 IPR012340 Nucleic acid-binding, OB-fold YPA_0088 IPR023646 Primosomal replication protein PriB YPA_0089 IPR000529 Ribosomal protein S6 YPA_0089 IPR014717 Translation elongation factor EF1B/ribosomal protein S6 YPA_0089 IPR020814 Ribosomal protein S6, plastid/chloroplast YPA_0089 IPR020815 Ribosomal protein S6, conserved site YPA_0089 IPR035980 YPA_0089 YPA_0091 IPR001375 Peptidase S9, prolyl oligopeptidase, catalytic domain YPA_0091 IPR029058 Alpha/Beta hydrolase fold YPA_0092 IPR001584 Integrase, catalytic core YPA_0092 IPR006120 Resolvase, HTH domain YPA_0092 IPR009057 Homeodomain-like YPA_0092 IPR012337 Ribonuclease H-like domain YPA_0093 IPR001270 ClpA/B family YPA_0093 IPR002611 IstB-like ATP-binding protein YPA_0093 IPR003593 AAA+ ATPase domain YPA_0093 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPA_0093 IPR028350 DNA replication protein DnaC/insertion sequence putative ATP-binding protein YPA_0095 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain YPA_0095 IPR018129 Phosphoenolpyruvate carboxylase, active site YPA_0095 IPR021135 Phosphoenolpyruvate carboxylase YPA_0095 IPR022805 Phosphoenolpyruvate carboxylase, bacterial/plant-type YPA_0095 IPR033129 YPA_0095 YPA_0096 IPR001261 ArgE/DapE/ACY1/CPG2/YscS, conserved site YPA_0096 IPR002933 Peptidase M20 YPA_0096 IPR010169 Acetylornithine deacetylase (ArgE) YPA_0096 IPR011650 Peptidase M20, dimerisation domain YPA_0096 IPR036264 YPA_0096 YPA_0097 IPR000534 Semialdehyde dehydrogenase, NAD-binding YPA_0097 IPR000706 N-acetyl-gamma-glutamyl-phosphate reductase, type 1 YPA_0097 IPR012280 Semialdehyde dehydrogenase, dimerisation domain YPA_0097 IPR023013 N-acetyl-gamma-glutamyl-phosphate reductase, active site YPA_0097 IPR036291 YPA_0097 YPA_0098 IPR001048 Aspartate/glutamate/uridylate kinase YPA_0098 IPR004662 Acetylglutamate kinase YPA_0098 IPR036393 YPA_0098 YPA_0098 IPR037528 YPA_0098 YPA_0099 IPR000362 Fumarate lyase family YPA_0099 IPR008948 L-Aspartase-like YPA_0099 IPR009049 Argininosuccinate lyase YPA_0099 IPR020557 Fumarate lyase, conserved site YPA_0099 IPR022761 Fumarate lyase, N-terminal YPA_0099 IPR024083 Fumarase/histidase, N-terminal YPA_0099 IPR029419 Argininosuccinate lyase, C-terminal YPA_0100 IPR000531 TonB-dependent receptor, beta-barrel YPA_0100 IPR010949 TonB-dependent haemoglobin/transferrin/lactoferrin receptor YPA_0100 IPR011276 TonB-dependent haem/haemoglobin receptor YPA_0100 IPR012910 TonB-dependent receptor, plug YPA_0100 IPR036942 YPA_0100 YPA_0100 IPR037066 YPA_0100 YPA_0101 IPR010495 Haem-binding HasA YPA_0101 IPR036912 YPA_0101 YPA_0102 IPR003439 ABC transporter-like YPA_0102 IPR003593 AAA+ ATPase domain YPA_0102 IPR010128 ATPase, type I secretion system, PrtD YPA_0102 IPR011527 ABC transporter type 1, transmembrane domain YPA_0102 IPR017871 ABC transporter, conserved site YPA_0102 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPA_0102 IPR036640 YPA_0102 YPA_0103 IPR003997 RTX secretion protein D, Gram-negative bacteria YPA_0103 IPR006144 Secretion protein HlyD, conserved site YPA_0103 IPR010129 Type I secretion membrane fusion protein, HlyD YPA_0103 IPR039562 YPA_0103 YPA_0104 IPR006260 TonB, C-terminal YPA_0104 IPR037682 YPA_0104 YPA_0105 IPR001100 YPA_0105 YPA_0105 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain YPA_0105 IPR016156 FAD/NAD-linked reductase, dimerisation domain YPA_0105 IPR023753 Pyridine nucleotide-disulphide oxidoreductase, FAD/NAD(P)-binding domain YPA_0105 IPR036188 YPA_0105 YPA_0105 IPR036324 YPA_0105 YPA_0106 IPR002109 Glutaredoxin YPA_0106 IPR011767 Glutaredoxin active site YPA_0106 IPR011906 Glutaredoxin domain YPA_0106 IPR013740 Redoxin YPA_0106 IPR014025 Glutaredoxin subgroup YPA_0106 IPR036249 YPA_0106 YPA_0107 IPR000847 Transcription regulator HTH, LysR YPA_0107 IPR005119 LysR, substrate-binding YPA_0107 IPR036388 YPA_0107 YPA_0107 IPR036390 YPA_0107 YPA_0108 IPR001100 YPA_0108 YPA_0108 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain YPA_0108 IPR016156 FAD/NAD-linked reductase, dimerisation domain YPA_0108 IPR022962 Soluble pyridine nucleotide transhydrogenase YPA_0108 IPR023753 Pyridine nucleotide-disulphide oxidoreductase, FAD/NAD(P)-binding domain YPA_0108 IPR036188 YPA_0108 YPA_0109 IPR001647 DNA-binding HTH domain, TetR-type YPA_0109 IPR009057 Homeodomain-like YPA_0109 IPR023764 Transcriptional repressor HTH, FabR YPA_0110 IPR009867 Protein of unknown function DUF1422 YPA_0111 IPR010280 (Uracil-5)-methyltransferase family YPA_0111 IPR011869 tRNA/tmRNA (uracil-C(5))-methyltransferase, TrmA YPA_0111 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase-like YPA_0111 IPR030390 YPA_0111 YPA_0111 IPR030391 YPA_0111 YPA_0112 IPR000531 TonB-dependent receptor, beta-barrel YPA_0112 IPR010101 TonB-dependent vitamin B12 transporter BtuB YPA_0112 IPR010917 TonB-dependent receptor, conserved site YPA_0112 IPR012910 TonB-dependent receptor, plug YPA_0112 IPR036942 YPA_0112 YPA_0112 IPR037066 YPA_0112 YPA_0113 IPR001920 Asp/Glu racemase YPA_0113 IPR004391 Glutamate racemase YPA_0113 IPR015942 Asp/Glu/hydantoin racemase YPA_0113 IPR018187 Asp/Glu racemase, active site YPA_0113 IPR033134 YPA_0113 YPA_0114 IPR025997 Periplasmic binding protein domain YPA_0114 IPR028082 Periplasmic binding protein-like I YPA_0115 IPR003439 ABC transporter-like YPA_0115 IPR003593 AAA+ ATPase domain YPA_0115 IPR017871 ABC transporter, conserved site YPA_0115 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPA_0116 IPR001851 ABC transporter, permease YPA_0117 IPR001851 ABC transporter, permease YPA_0118 IPR000847 Transcription regulator HTH, LysR YPA_0118 IPR005119 LysR, substrate-binding YPA_0118 IPR020890 Transcription regulator HTH, HdfR YPA_0118 IPR036388 YPA_0118 YPA_0118 IPR036390 YPA_0118 YPA_0119 IPR007335 Protein of unknown function DUF413 YPA_0120 IPR000523 Magnesium chelatase, ChlI subunit YPA_0120 IPR001208 Mini-chromosome maintenance, DNA-dependent ATPase YPA_0120 IPR003593 AAA+ ATPase domain YPA_0120 IPR004482 Mg chelatase-related protein YPA_0120 IPR020568 Ribosomal protein S5 domain 2-type fold YPA_0120 IPR025158 Mg chelatase-related protein, C-terminal domain YPA_0120 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPA_0121 IPR000399 TPP-binding enzyme, conserved site YPA_0121 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding YPA_0121 IPR012000 Thiamine pyrophosphate enzyme, central domain YPA_0121 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain YPA_0121 IPR012846 Acetolactate synthase, large subunit, biosynthetic YPA_0121 IPR029035 DHS-like NAD/FAD-binding domain YPA_0121 IPR029061 Thiamin diphosphate-binding fold YPA_0123 IPR001544 Aminotransferase, class IV YPA_0123 IPR005785 Branched-chain amino acid aminotransferase I YPA_0123 IPR018300 Aminotransferase, class IV, conserved site YPA_0123 IPR036038 YPA_0123 YPA_0124 IPR000581 Dihydroxy-acid/6-phosphogluconate dehydratase YPA_0124 IPR004404 Dihydroxy-acid dehydratase YPA_0124 IPR020558 Dihydroxy-acid/6-phosphogluconate dehydratase, conserved site YPA_0124 IPR037237 YPA_0124 YPA_0125 IPR000634 Serine/threonine dehydratase, pyridoxal-phosphate-binding site YPA_0125 IPR001721 ACT-like domain YPA_0125 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme YPA_0125 IPR005787 Threonine dehydratase, biosynthetic YPA_0125 IPR036052 YPA_0125 YPA_0125 IPR038110 YPA_0125 YPA_0126 IPR010351 Protein of unknown function DUF943 YPA_0127 IPR010351 Protein of unknown function DUF943 YPA_0128 IPR017483 Conserved hypothetical protein CHP03034 YPA_0129 IPR017483 Conserved hypothetical protein CHP03034 YPA_0131 IPR000847 Transcription regulator HTH, LysR YPA_0131 IPR005119 LysR, substrate-binding YPA_0131 IPR036388 YPA_0131 YPA_0131 IPR036390 YPA_0131 YPA_0132 IPR000506 Acetohydroxy acid isomeroreductase C-terminal YPA_0132 IPR008927 6-phosphogluconate dehydrogenase, C-terminal-like YPA_0132 IPR013023 Acetohydroxy acid isomeroreductase YPA_0132 IPR013116 Acetohydroxy acid isomeroreductase, catalytic YPA_0132 IPR013328 Dehydrogenase, multihelical YPA_0132 IPR036291 YPA_0132 YPA_0133 IPR016128 Pyosin/cloacin translocation domain YPA_0133 IPR036302 YPA_0133 YPA_0135 IPR003060 Pyocin S killer protein YPA_0135 IPR003615 HNH nuclease YPA_0135 IPR037146 YPA_0135 YPA_0136 IPR000290 Colicin immunity protein/pyocin immunity protein YPA_0136 IPR035900 YPA_0136 YPA_0138 IPR001829 Pili assembly chaperone, bacterial YPA_0138 IPR008962 PapD-like YPA_0138 IPR013783 Immunoglobulin-like fold YPA_0138 IPR016147 PapD, N-terminal, bacterial YPA_0138 IPR016148 Pili assembly chaperone, C-terminal domain YPA_0138 IPR018046 Pili assembly chaperone, conserved site YPA_0138 IPR036316 YPA_0138 YPA_0139 IPR000259 Fimbrial-type adhesion domain YPA_0139 IPR008966 Adhesion domain YPA_0139 IPR011228 Uncharacterised conserved protein UCP029766 YPA_0139 IPR036937 YPA_0139 YPA_0140 IPR000015 Outer membrane usher protein YPA_0140 IPR018030 Fimbrial membrane usher, conserved site YPA_0140 IPR025885 PapC, N-terminal domain YPA_0140 IPR025949 PapC-like, C-terminal domain YPA_0140 IPR037224 YPA_0140 YPA_0141 IPR001829 Pili assembly chaperone, bacterial YPA_0141 IPR008962 PapD-like YPA_0141 IPR013783 Immunoglobulin-like fold YPA_0141 IPR016147 PapD, N-terminal, bacterial YPA_0141 IPR016148 Pili assembly chaperone, C-terminal domain YPA_0141 IPR036316 YPA_0141 YPA_0142 IPR008966 Adhesion domain YPA_0142 IPR036937 YPA_0142 YPA_0142 IPR039458 YPA_0142 YPA_0143 IPR001207 Transposase, mutator type YPA_0144 IPR007788 Glutamine cyclotransferase YPA_0144 IPR011044 Quinoprotein amine dehydrogenase, beta chain-like YPA_0144 IPR015943 WD40/YVTN repeat-like-containing domain YPA_0146 IPR005752 DNA helicase, ATP-dependent, RepA type YPA_0146 IPR013986 DExx box DNA helicase domain YPA_0146 IPR014017 DNA helicase, UvrD-like, C-terminal YPA_0146 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPA_0146 IPR034739 YPA_0146 YPA_0147 IPR003695 Ppx/GppA phosphatase YPA_0148 IPR003695 Ppx/GppA phosphatase YPA_0149 IPR000629 RNA helicase, ATP-dependent, DEAD-box, conserved site YPA_0149 IPR001650 Helicase, C-terminal YPA_0149 IPR011545 DEAD/DEAH box helicase domain YPA_0149 IPR014001 Helicase, superfamily 1/2, ATP-binding domain YPA_0149 IPR023554 RNA helicase, ATP-dependent, RhlB-type YPA_0149 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPA_0150 IPR005746 Thioredoxin YPA_0150 IPR013766 Thioredoxin domain YPA_0150 IPR017937 Thioredoxin, conserved site YPA_0150 IPR036249 YPA_0150 YPA_0151 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain YPA_0151 IPR003593 AAA+ ATPase domain YPA_0151 IPR004665 Transcription termination factor Rho YPA_0151 IPR011112 Rho termination factor, N-terminal YPA_0151 IPR011113 Rho termination factor, RNA-binding YPA_0151 IPR011129 Cold shock protein YPA_0151 IPR012340 Nucleic acid-binding, OB-fold YPA_0151 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPA_0151 IPR036269 YPA_0151 YPA_0152 IPR000715 Glycosyl transferase, family 4 YPA_0152 IPR012750 Undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphatetransferase YPA_0153 IPR003856 Lipopolysaccharide biosynthesis YPA_0153 IPR032895 YPA_0153 YPA_0154 IPR003331 UDP-N-acetylglucosamine 2-epimerase YPA_0154 IPR029767 UDP-N-acetylglucosamine 2-epimerase, WecB-type YPA_0154 IPR032892 YPA_0154 YPA_0155 IPR001732 UDP-glucose/GDP-mannose dehydrogenase, N-terminal YPA_0155 IPR008927 6-phosphogluconate dehydrogenase, C-terminal-like YPA_0155 IPR014026 UDP-glucose/GDP-mannose dehydrogenase, dimerisation YPA_0155 IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal YPA_0155 IPR017476 UDP-glucose/GDP-mannose dehydrogenase YPA_0155 IPR028359 UDP-N-acetyl-D-mannosamine/glucosamine dehydrogenase YPA_0155 IPR032891 YPA_0155 YPA_0155 IPR036220 YPA_0155 YPA_0155 IPR036291 YPA_0155 YPA_0156 IPR005888 dTDP-glucose 4,6-dehydratase YPA_0156 IPR016040 NAD(P)-binding domain YPA_0156 IPR036291 YPA_0156 YPA_0157 IPR005835 Nucleotidyl transferase YPA_0157 IPR005907 Glucose-1-phosphate thymidylyltransferase, short form YPA_0157 IPR029044 Nucleotide-diphospho-sugar transferases YPA_0158 IPR000182 GNAT domain YPA_0158 IPR012752 TDP-D-fucosamine acetyltransferase WecD YPA_0158 IPR016181 Acyl-CoA N-acyltransferase YPA_0159 IPR000653 DegT/DnrJ/EryC1/StrS aminotransferase YPA_0159 IPR012749 TDP-4-keto-6-deoxy-D-glucose transaminase YPA_0159 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 YPA_0159 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 YPA_0159 IPR015424 Pyridoxal phosphate-dependent transferase YPA_0159 IPR032894 YPA_0159 YPA_0160 IPR002797 Polysaccharide biosynthesis protein YPA_0160 IPR032896 YPA_0160 YPA_0161 IPR009993 4-alpha-L-fucosyltransferase YPA_0162 IPR010691 Uncharacterised protein family WzyE YPA_0163 IPR004629 Glycosyl transferase WecB/TagA/CpsF YPA_0163 IPR023085 UDP-N-acetyl-D-mannosaminuronic acid transferase YPA_0164 IPR002293 Amino acid/polyamine transporter I YPA_0164 IPR004840 Amino acid permease, conserved site YPA_0164 IPR004841 Amino acid permease/ SLC12A domain YPA_0165 IPR001584 Integrase, catalytic core YPA_0165 IPR006120 Resolvase, HTH domain YPA_0165 IPR009057 Homeodomain-like YPA_0165 IPR012337 Ribonuclease H-like domain YPA_0166 IPR001270 ClpA/B family YPA_0166 IPR002611 IstB-like ATP-binding protein YPA_0166 IPR003593 AAA+ ATPase domain YPA_0166 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPA_0166 IPR028350 DNA replication protein DnaC/insertion sequence putative ATP-binding protein YPA_0168 IPR002686 Transposase IS200-like YPA_0168 IPR036515 YPA_0168 YPA_0169 IPR005254 Heme biosynthesis-associated TPR protein YPA_0169 IPR010817 HemY, N-terminal YPA_0169 IPR011990 Tetratricopeptide-like helical domain YPA_0170 IPR007470 HemX YPA_0171 IPR003754 Tetrapyrrole biosynthesis, uroporphyrinogen III synthase YPA_0171 IPR036108 YPA_0171 YPA_0172 IPR000860 Tetrapyrrole biosynthesis, hydroxymethylbilane synthase YPA_0172 IPR022417 Porphobilinogen deaminase, N-terminal YPA_0172 IPR022418 Porphobilinogen deaminase, C-terminal YPA_0172 IPR022419 Porphobilinogen deaminase, dipyrromethane cofactor binding site YPA_0172 IPR036803 YPA_0172 YPA_0174 IPR000274 Adenylate cyclase, class-I YPA_0174 IPR024685 Adenylate cyclase class-I, N-terminal domain YPA_0174 IPR024686 Adenylate cyclase class-I, conserved site YPA_0175 IPR002908 Frataxin/CyaY YPA_0175 IPR020895 Frataxin conserved site YPA_0175 IPR036524 YPA_0175 YPA_0176 IPR032831 YPA_0176 YPA_0177 IPR001653 Diaminopimelate epimerase, DapF YPA_0177 IPR018510 Diaminopimelate epimerase, active site YPA_0178 IPR007435 Protein of unknown function DUF484 YPA_0178 IPR029016 GAF domain-like YPA_0179 IPR002104 Integrase, catalytic YPA_0179 IPR004107 Integrase, SAM-like, N-terminal YPA_0179 IPR010998 Integrase, Lambda-type, N-terminal YPA_0179 IPR011010 DNA breaking-rejoining enzyme, catalytic core YPA_0179 IPR011931 Tyrosine recombinase XerC YPA_0179 IPR013762 Integrase-like, catalytic core YPA_0179 IPR023009 Tyrosine recombinase XerC/XerD YPA_0180 IPR006439 HAD hydrolase, subfamily IA YPA_0180 IPR023214 HAD-like domain YPA_0180 IPR036412 YPA_0180 YPA_0181 IPR005753 DNA helicase, ATP-dependent, UvrD type YPA_0181 IPR013986 DExx box DNA helicase domain YPA_0181 IPR014017 DNA helicase, UvrD-like, C-terminal YPA_0181 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPA_0181 IPR034739 YPA_0181 YPA_0182 IPR001647 DNA-binding HTH domain, TetR-type YPA_0182 IPR009057 Homeodomain-like YPA_0183 IPR008322 Uncharacterised protein family UPF0261 YPA_0184 IPR009215 TIM-barrel domain, IGPS-like YPA_0184 IPR013785 Aldolase-type TIM barrel YPA_0184 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain YPA_0185 IPR002523 Mg2+ transporter protein, CorA-like/Zinc transport protein ZntB YPA_0185 IPR004488 Magnesium/cobalt transport protein CorA YPA_0186 IPR000620 Drug/metabolite transporter YPA_0186 IPR004626 RarD protein YPA_0187 IPR003736 Phenylacetic acid degradation-related domain YPA_0187 IPR006683 Thioesterase superfamily YPA_0187 IPR029069 HotDog domain YPA_0188 IPR003187 Phospholipase A1 YPA_0188 IPR036541 YPA_0188 YPA_0189 IPR001650 Helicase, C-terminal YPA_0189 IPR002121 HRDC domain YPA_0189 IPR004589 DNA helicase, ATP-dependent, RecQ type YPA_0189 IPR006293 DNA helicase, ATP-dependent, RecQ type, bacterial YPA_0189 IPR010997 HRDC-like YPA_0189 IPR011545 DEAD/DEAH box helicase domain YPA_0189 IPR014001 Helicase, superfamily 1/2, ATP-binding domain YPA_0189 IPR018982 RQC domain YPA_0189 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPA_0189 IPR032284 YPA_0189 YPA_0189 IPR036388 YPA_0189 YPA_0190 IPR001123 Lysine-type exporter protein (LYSE/YGGA) YPA_0190 IPR004778 Homoserine/Threonine efflux protein YPA_0191 IPR001123 Lysine-type exporter protein (LYSE/YGGA) YPA_0192 IPR022742 Putative lysophospholipase YPA_0192 IPR029058 Alpha/Beta hydrolase fold YPA_0193 IPR000150 Cof protein YPA_0193 IPR006379 HAD-superfamily hydrolase, subfamily IIB YPA_0193 IPR023214 HAD-like domain YPA_0193 IPR036412 YPA_0193 YPA_0194 IPR004954 Peptidase M60, viral enhancin protein YPA_0195 IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain YPA_0195 IPR030395 YPA_0195 YPA_0196 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase YPA_0196 IPR006076 FAD dependent oxidoreductase YPA_0196 IPR007419 BFD-like [2Fe-2S]-binding domain YPA_0196 IPR017752 Glycerol-3-phosphate dehydrogenase, GlpA subunit YPA_0196 IPR036188 YPA_0196 YPA_0197 IPR003953 FAD binding domain YPA_0197 IPR009158 Glycerol-3-phosphate dehydrogenase, GlpB subunit YPA_0197 IPR036188 YPA_0197 YPA_0198 IPR004017 Cysteine-rich domain YPA_0198 IPR009051 Alpha-helical ferredoxin YPA_0198 IPR017753 Glycerol-3-phosphate dehydrogenase, GlpC subunit YPA_0198 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain YPA_0198 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site YPA_0199 IPR014894 Protein DcrB YPA_0199 IPR016123 Mog1/PsbP, alpha/beta/alpha sandwich YPA_0200 IPR003744 Protein of unknown function DUF165 YPA_0201 IPR001455 TusA-like domain YPA_0201 IPR022931 Sulphurtransferase TusA YPA_0201 IPR036868 YPA_0201 YPA_0202 IPR001757 Cation-transporting P-type ATPase YPA_0202 IPR006121 Heavy metal-associated domain, HMA YPA_0202 IPR008250 P-type ATPase, A domain YPA_0202 IPR017969 Heavy-metal-associated, conserved site YPA_0202 IPR018303 P-type ATPase, phosphorylation site YPA_0202 IPR023214 HAD-like domain YPA_0202 IPR023298 P-type ATPase, transmembrane domain YPA_0202 IPR023299 P-type ATPase, cytoplasmic domain N YPA_0202 IPR027256 Cation-transporting P-type ATPase, subfamily IB YPA_0202 IPR036163 YPA_0202 YPA_0202 IPR036412 YPA_0202 YPA_0203 IPR012506 YhhN-like YPA_0204 IPR014949 Protein of unknown function DUF1820 YPA_0205 IPR019635 Protein of unknown function DUF2500 YPA_0206 IPR009525 Protein of unknown function DUF1145 YPA_0207 IPR002052 DNA methylase, N-6 adenine-specific, conserved site YPA_0207 IPR004398 RNA methyltransferase, RsmD YPA_0207 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase-like YPA_0208 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain YPA_0208 IPR003593 AAA+ ATPase domain YPA_0208 IPR004390 Signal-recognition particle receptor FtsY YPA_0208 IPR013822 Signal recognition particle, SRP54 subunit, helical bundle YPA_0208 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPA_0208 IPR036225 YPA_0208 YPA_0209 IPR003439 ABC transporter-like YPA_0209 IPR003593 AAA+ ATPase domain YPA_0209 IPR005286 Cell division protein FtsE, ATP-binding YPA_0209 IPR017871 ABC transporter, conserved site YPA_0209 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPA_0210 IPR003838 Permease FtsX-like YPA_0210 IPR004513 ABC transporter, cell division protein FtsX YPA_0211 IPR000943 RNA polymerase sigma-70 YPA_0211 IPR007627 RNA polymerase sigma-70 region 2 YPA_0211 IPR007630 RNA polymerase sigma-70 region 4 YPA_0211 IPR009042 RNA polymerase sigma-70 region 1.2 YPA_0211 IPR012759 RNA polymerase sigma factor RpoH, proteobacteria YPA_0211 IPR013324 RNA polymerase sigma factor, region 3/4 YPA_0211 IPR013325 RNA polymerase sigma factor, region 2 YPA_0211 IPR014284 RNA polymerase sigma-70 like domain YPA_0211 IPR036388 YPA_0211 YPA_0212 IPR002686 Transposase IS200-like YPA_0212 IPR036515 YPA_0212 YPA_0213 IPR000182 GNAT domain YPA_0213 IPR016181 Acyl-CoA N-acyltransferase YPA_0213 IPR032900 YPA_0213 YPA_0214 IPR000709 Leu/Ile/Val-binding protein YPA_0214 IPR028081 Leucine-binding protein domain YPA_0214 IPR028082 Periplasmic binding protein-like I YPA_0215 IPR001270 ClpA/B family YPA_0215 IPR002611 IstB-like ATP-binding protein YPA_0215 IPR003593 AAA+ ATPase domain YPA_0215 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPA_0215 IPR028350 DNA replication protein DnaC/insertion sequence putative ATP-binding protein YPA_0216 IPR001584 Integrase, catalytic core YPA_0216 IPR006120 Resolvase, HTH domain YPA_0216 IPR009057 Homeodomain-like YPA_0216 IPR012337 Ribonuclease H-like domain YPA_0217 IPR001851 ABC transporter, permease YPA_0218 IPR001851 ABC transporter, permease YPA_0218 IPR021807 High-affinity branched-chain amino acid transport system permease, LivHM, N-terminal YPA_0219 IPR003439 ABC transporter-like YPA_0219 IPR003593 AAA+ ATPase domain YPA_0219 IPR017871 ABC transporter, conserved site YPA_0219 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPA_0219 IPR032823 YPA_0219 YPA_0220 IPR003439 ABC transporter-like YPA_0220 IPR003593 AAA+ ATPase domain YPA_0220 IPR017871 ABC transporter, conserved site YPA_0220 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPA_0220 IPR030660 YPA_0220 YPA_0224 IPR013783 Immunoglobulin-like fold YPA_0225 IPR008962 PapD-like YPA_0225 IPR013783 Immunoglobulin-like fold YPA_0226 IPR032636 YPA_0226 YPA_0227 IPR007540 Fimbrial major subunit, CS1-type YPA_0228 IPR006059 Bacterial extracellular solute-binding, family 1 YPA_0228 IPR006061 Bacterial extracellular solute-binding family 1, conserved site YPA_0229 IPR000515 MetI-like domain YPA_0229 IPR035906 YPA_0229 YPA_0230 IPR000515 MetI-like domain YPA_0230 IPR035906 YPA_0230 YPA_0231 IPR003439 ABC transporter-like YPA_0231 IPR003593 AAA+ ATPase domain YPA_0231 IPR008995 Molybdate/tungstate binding, C-terminal YPA_0231 IPR013611 Transport-associated OB, type 2 YPA_0231 IPR017871 ABC transporter, conserved site YPA_0231 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPA_0232 IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain YPA_0232 IPR030395 YPA_0232 YPA_0233 IPR004776 Auxin efflux carrier YPA_0234 IPR000620 Drug/metabolite transporter YPA_0234 IPR004779 Carboxylate/Amino Acid/Amine Transporter YPA_0235 IPR000847 Transcription regulator HTH, LysR YPA_0235 IPR005119 LysR, substrate-binding YPA_0235 IPR036388 YPA_0235 YPA_0235 IPR036390 YPA_0235 YPA_0236 IPR002629 Cobalamin-independent methionine synthase MetE, C-terminal/archaeal YPA_0236 IPR006276 Cobalamin-independent methionine synthase YPA_0236 IPR013215 Cobalamin-independent methionine synthase MetE, N-terminal YPA_0236 IPR038071 YPA_0236 YPA_0237 IPR002925 Dienelactone hydrolase YPA_0237 IPR029058 Alpha/Beta hydrolase fold YPA_0238 IPR000845 Nucleoside phosphorylase domain YPA_0238 IPR010058 Uridine phosphorylase YPA_0238 IPR018016 Nucleoside phosphorylase, conserved site YPA_0238 IPR035994 YPA_0238 YPA_0239 IPR026893 Tyrosine/serine-protein phosphatase IphP-type YPA_0239 IPR029021 Protein-tyrosine phosphatase-like YPA_0240 IPR003706 Carbon starvation protein CstA YPA_0240 IPR025299 CstA C-terminal domain YPA_0241 IPR032816 YPA_0241 YPA_0242 IPR003798 DNA recombination RmuC YPA_0243 IPR004033 UbiE/COQ5 methyltransferase YPA_0243 IPR023576 UbiE/COQ5 methyltransferase, conserved site YPA_0243 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase-like YPA_0244 IPR003033 SCP2 sterol-binding domain YPA_0244 IPR036527 YPA_0244 YPA_0245 IPR004147 UbiB domain YPA_0245 IPR010232 Probable protein kinase UbiB YPA_0245 IPR011009 Protein kinase-like domain YPA_0246 IPR003369 Sec-independent protein translocase protein TatA/B/E YPA_0246 IPR006312 Sec-independent protein translocase protein TatA/E YPA_0247 IPR018448 Twin-arginine translocation protein TatB YPA_0248 IPR002033 Sec-independent periplasmic protein translocase TatC YPA_0248 IPR019820 Sec-independent periplasmic protein translocase, conserved site YPA_0249 IPR001130 TatD family YPA_0249 IPR018228 Deoxyribonuclease, TatD-related, conserved site YPA_0249 IPR032466 YPA_0249 YPA_0250 IPR001584 Integrase, catalytic core YPA_0250 IPR006120 Resolvase, HTH domain YPA_0250 IPR009057 Homeodomain-like YPA_0250 IPR012337 Ribonuclease H-like domain YPA_0251 IPR001270 ClpA/B family YPA_0251 IPR002611 IstB-like ATP-binding protein YPA_0251 IPR003593 AAA+ ATPase domain YPA_0251 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPA_0251 IPR028350 DNA replication protein DnaC/insertion sequence putative ATP-binding protein YPA_0252 IPR025326 Protein of unknown function DUF4232 YPA_0253 IPR005493 Ribonuclease E inhibitor RraA/Dimethylmenaquinone methyltransferase YPA_0253 IPR010203 Regulator of ribonuclease activity A YPA_0253 IPR014339 Regulator of ribonuclease activity A, gammaproteobacteria YPA_0253 IPR036704 YPA_0253 YPA_0254 IPR000537 UbiA prenyltransferase family YPA_0254 IPR004657 1,4-dihydroxy-2-naphthoate octaprenyltransferase YPA_0254 IPR026046 UbiA prenyltransferase domain containing protein 1 YPA_0255 IPR003593 AAA+ ATPase domain YPA_0255 IPR003959 ATPase, AAA-type, core YPA_0255 IPR004491 Heat shock protein HslU YPA_0255 IPR019489 Clp ATPase, C-terminal YPA_0255 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPA_0256 IPR001353 Proteasome, subunit alpha/beta YPA_0256 IPR022281 ATP-dependent protease, HslV subunit YPA_0256 IPR029055 Nucleophile aminohydrolases, N-terminal YPA_0257 IPR007730 Sporulation-related domain YPA_0257 IPR011930 Cell division protein FtsN YPA_0257 IPR036680 YPA_0257 YPA_0258 IPR000843 Transcription regulator HTH, LacI YPA_0258 IPR010982 Lambda repressor-like, DNA-binding domain YPA_0258 IPR028082 Periplasmic binding protein-like I YPA_0259 IPR001650 Helicase, C-terminal YPA_0259 IPR005259 Primosomal protein n YPA_0259 IPR011545 DEAD/DEAH box helicase domain YPA_0259 IPR014001 Helicase, superfamily 1/2, ATP-binding domain YPA_0259 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPA_0260 IPR002150 Ribosomal protein L31 YPA_0260 IPR027491 Ribosomal protein L31 type A YPA_0260 IPR034704 YPA_0260 YPA_0261 IPR008024 YiaAB two helix YPA_0262 IPR002084 Methionine repressor MetJ YPA_0262 IPR010985 Ribbon-helix-helix YPA_0262 IPR023453 Methionine repressor MetJ domain YPA_0263 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme YPA_0263 IPR011821 O-succinylhomoserine (thiol)-lyase YPA_0263 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 YPA_0263 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 YPA_0263 IPR015424 Pyridoxal phosphate-dependent transferase YPA_0264 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme YPA_0264 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 YPA_0264 IPR015424 Pyridoxal phosphate-dependent transferase YPA_0265 IPR001048 Aspartate/glutamate/uridylate kinase YPA_0265 IPR001341 Aspartate kinase domain YPA_0265 IPR001342 Homoserine dehydrogenase, catalytic YPA_0265 IPR005106 Aspartate/homoserine dehydrogenase, NAD-binding YPA_0265 IPR011147 Bifunctional aspartokinase/homoserine dehydrogenase I YPA_0265 IPR018042 Aspartate kinase, conserved site YPA_0265 IPR019811 Homoserine dehydrogenase, conserved site YPA_0265 IPR036291 YPA_0265 YPA_0265 IPR036393 YPA_0265 YPA_0266 IPR003171 Methylenetetrahydrofolate reductase YPA_0266 IPR004620 5,10-methylenetetrahydrofolate reductase YPA_0266 IPR029041 FAD-linked oxidoreductase-like YPA_0267 IPR001584 Integrase, catalytic core YPA_0267 IPR012337 Ribonuclease H-like domain YPA_0267 IPR025948 HTH-like domain YPA_0267 IPR036397 YPA_0267 YPA_0268 IPR009057 Homeodomain-like YPA_0268 IPR010921 Trp repressor/replication initiator YPA_0269 IPR001927 Sodium:galactoside symporter YPA_0269 IPR036259 YPA_0269 YPA_0270 IPR000531 TonB-dependent receptor, beta-barrel YPA_0270 IPR010105 TonB-dependent siderophore receptor YPA_0270 IPR010917 TonB-dependent receptor, conserved site YPA_0270 IPR012910 TonB-dependent receptor, plug YPA_0270 IPR036942 YPA_0270 YPA_0270 IPR037066 YPA_0270 YPA_0271 IPR025700 L-lysine 6-monooxygenase/L-ornithine 5-monooxygenase YPA_0271 IPR036188 YPA_0271 YPA_0272 IPR007310 Aerobactin siderophore biosynthesis, IucA/IucC, N-terminal YPA_0272 IPR022770 Ferric iron reductase FhuF domain YPA_0273 IPR016181 Acyl-CoA N-acyltransferase YPA_0273 IPR019432 Siderophore biosynthesis protein, conserved domain YPA_0274 IPR007310 Aerobactin siderophore biosynthesis, IucA/IucC, N-terminal YPA_0274 IPR022770 Ferric iron reductase FhuF domain YPA_0275 IPR007310 Aerobactin siderophore biosynthesis, IucA/IucC, N-terminal YPA_0276 IPR011701 Major facilitator superfamily YPA_0276 IPR036259 YPA_0276 YPA_0277 IPR000627 Intradiol ring-cleavage dioxygenase, C-terminal YPA_0277 IPR015889 Intradiol ring-cleavage dioxygenase, core YPA_0278 IPR010126 Esterase, PHB depolymerase YPA_0278 IPR029058 Alpha/Beta hydrolase fold YPA_0279 IPR000792 Transcription regulator LuxR, C-terminal YPA_0279 IPR005143 Transcription factor LuxR-like, autoinducer-binding domain YPA_0279 IPR016032 Signal transduction response regulator, C-terminal effector YPA_0279 IPR036388 YPA_0279 YPA_0279 IPR036693 YPA_0279 YPA_0280 IPR001690 Autoinducer synthesis protein YPA_0280 IPR016181 Acyl-CoA N-acyltransferase YPA_0280 IPR018311 Autoinducer synthesis, conserved site YPA_0281 IPR003675 CAAX amino terminal protease YPA_0283 IPR003220 InsA N-terminal domain YPA_0283 IPR024431 Insertion element IS1 protein InsA, helix-turn-helix domain YPA_0284 IPR008312 Uncharacterised conserved protein UCP028301 YPA_0285 IPR010269 Protein of unknown function DUF877 YPA_0286 IPR010263 Protein of unknown function DUF876 YPA_0287 IPR017732 Type IV / VI secretion system, DotU YPA_0287 IPR038522 YPA_0287 YPA_0288 IPR006665 Outer membrane protein, OmpA/MotB, C-terminal YPA_0288 IPR036737 YPA_0288 YPA_0289 IPR008514 Type VI secretion system effector, Hcp YPA_0289 IPR036624 YPA_0289 YPA_0290 IPR001270 ClpA/B family YPA_0290 IPR003593 AAA+ ATPase domain YPA_0290 IPR003959 ATPase, AAA-type, core YPA_0290 IPR017729 Type VI secretion system, ATPase ClpV1 YPA_0290 IPR018368 ClpA/B, conserved site 1 YPA_0290 IPR019489 Clp ATPase, C-terminal YPA_0290 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPA_0290 IPR036628 YPA_0290 YPA_0291 IPR006533 Type VI secretion system, RhsGE-associated Vgr protein YPA_0291 IPR017847 Type VI secretion system, RhsGE-associated Vgr family subset YPA_0291 IPR018769 Domain of unknown function DUF2345, Vgr C-terminal YPA_0291 IPR028244 Putative type VI secretion system, Rhs element associated Vgr domain YPA_0291 IPR037026 YPA_0291 YPA_0292 IPR011055 Duplicated hybrid motif YPA_0292 IPR023346 Lysozyme-like domain YPA_0293 IPR003220 InsA N-terminal domain YPA_0293 IPR024431 Insertion element IS1 protein InsA, helix-turn-helix domain YPA_0295 IPR005063 Transposase, IS1 YPA_0296 IPR018769 Domain of unknown function DUF2345, Vgr C-terminal YPA_0297 IPR011055 Duplicated hybrid motif YPA_0297 IPR016047 Peptidase M23 YPA_0297 IPR023346 Lysozyme-like domain YPA_0299 IPR003220 InsA N-terminal domain YPA_0299 IPR024431 Insertion element IS1 protein InsA, helix-turn-helix domain YPA_0300 IPR005063 Transposase, IS1 YPA_0301 IPR018769 Domain of unknown function DUF2345, Vgr C-terminal YPA_0302 IPR002104 Integrase, catalytic YPA_0302 IPR011010 DNA breaking-rejoining enzyme, catalytic core YPA_0302 IPR013762 Integrase-like, catalytic core YPA_0304 IPR000310 Orn/Lys/Arg decarboxylase, major domain YPA_0304 IPR005308 Orn/Lys/Arg decarboxylase, N-terminal YPA_0304 IPR008286 Orn/Lys/Arg decarboxylase, C-terminal YPA_0304 IPR011006 CheY-like superfamily YPA_0304 IPR011193 Ornithine/lysine/arginine decarboxylase YPA_0304 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 YPA_0304 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 YPA_0304 IPR015424 Pyridoxal phosphate-dependent transferase YPA_0304 IPR027464 Ornithine decarboxylase, N-terminal domain YPA_0304 IPR027568 Ornithine decarboxylase SpeF YPA_0304 IPR036633 YPA_0304 YPA_0305 IPR025997 Periplasmic binding protein domain YPA_0305 IPR028082 Periplasmic binding protein-like I YPA_0306 IPR003439 ABC transporter-like YPA_0306 IPR003593 AAA+ ATPase domain YPA_0306 IPR017871 ABC transporter, conserved site YPA_0306 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPA_0307 IPR001851 ABC transporter, permease YPA_0308 IPR000531 TonB-dependent receptor, beta-barrel YPA_0308 IPR010105 TonB-dependent siderophore receptor YPA_0308 IPR012910 TonB-dependent receptor, plug YPA_0308 IPR036942 YPA_0308 YPA_0308 IPR037066 YPA_0308 YPA_0309 IPR002491 ABC transporter periplasmic binding domain YPA_0310 IPR000189 Prokaryotic transglycosylase, active site YPA_0310 IPR008258 Lytic transglycosylase-like SLT domain YPA_0310 IPR023346 Lysozyme-like domain YPA_0310 IPR023664 Murein transglycosylase-C YPA_0310 IPR024570 Murein transglycosylase-C, N-terminal YPA_0311 IPR007457 Fe(II) trafficking protein YggX YPA_0311 IPR036766 YPA_0311 YPA_0312 IPR000445 Helix-hairpin-helix motif YPA_0312 IPR003265 HhH-GPD domain YPA_0312 IPR003651 Endonuclease III-like, iron-sulphur cluster loop motif YPA_0312 IPR004035 Endonuclease III, iron-sulphur binding site YPA_0312 IPR004036 Endonuclease III-like, conserved site-2 YPA_0312 IPR005760 A/G-specific adenine glycosylase MutY YPA_0312 IPR011257 DNA glycosylase YPA_0312 IPR015797 NUDIX hydrolase domain-like YPA_0312 IPR023170 Helix-turn-helix, base-excision DNA repair, C-terminal YPA_0312 IPR029119 MutY, C-terminal YPA_0313 IPR003358 tRNA (guanine-N-7) methyltransferase YPA_0313 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase-like YPA_0314 IPR007416 Protein of unknown function DUF469 YPA_0315 IPR012338 Beta-lactamase/transpeptidase-like YPA_0315 IPR015868 Glutaminase YPA_0316 IPR021307 Protein of unknown function DUF2884 YPA_0317 IPR021307 Protein of unknown function DUF2884 YPA_0318 IPR011049 Serralysin-like metalloprotease, C-terminal YPA_0318 IPR020974 Peptidase C80, RTX cysteine protease domain YPA_0318 IPR038383 YPA_0318 YPA_0319 IPR004559 Coproporphyrinogen III oxidase, oxygen-independent related YPA_0319 IPR006638 Elongator protein 3/MiaB/NifB YPA_0319 IPR007197 Radical SAM YPA_0319 IPR010723 HemN, C-terminal domain YPA_0319 IPR023404 Radical SAM, alpha/beta horseshoe YPA_0320 IPR002637 Ham1-like protein YPA_0320 IPR020922 Non-canonical purine NTP pyrophosphatase YPA_0320 IPR029001 Inosine triphosphate pyrophosphatase-like YPA_0321 IPR003746 Protein of unknown function DUF167 YPA_0321 IPR005228 Conserved hypothetical protein CHP00251 YPA_0321 IPR036591 YPA_0321 YPA_0322 IPR003425 Uncharacterised protein family Ycf19 YPA_0323 IPR000304 Pyrroline-5-carboxylate reductase YPA_0323 IPR008927 6-phosphogluconate dehydrogenase, C-terminal-like YPA_0323 IPR028939 Pyrroline-5-carboxylate reductase, catalytic, N-terminal YPA_0323 IPR029036 Pyrroline-5-carboxylate reductase, dimerisation domain YPA_0323 IPR036291 YPA_0323 YPA_0324 IPR001608 Alanine racemase, N-terminal YPA_0324 IPR011078 Uncharacterised protein family UPF0001 YPA_0324 IPR029066 PLP-binding barrel YPA_0325 IPR001482 Type II secretion system protein E YPA_0325 IPR003593 AAA+ ATPase domain YPA_0325 IPR006321 Pilus retraction protein PilT YPA_0325 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPA_0326 IPR007466 Peptidyl-arginine deiminase, Porphyromonas-type YPA_0326 IPR017754 Agmatine deiminase YPA_0327 IPR003010 Carbon-nitrogen hydrolase YPA_0327 IPR017755 N-carbamoylputrescine amidase YPA_0327 IPR036526 YPA_0327 YPA_0328 IPR005227 Resolvase, holliday junction-type, YqgF-like YPA_0328 IPR006641 YqgF/RNase H-like domain YPA_0328 IPR012337 Ribonuclease H-like domain YPA_0328 IPR037027 YPA_0328 YPA_0329 IPR003774 Protein of unknown function UPF0301 YPA_0330 IPR004215 Prokaryotic glutathione synthetase, N-terminal YPA_0330 IPR004218 Prokaryotic glutathione synthetase, ATP-binding YPA_0330 IPR006284 Glutathione synthetase, prokaryotic YPA_0330 IPR013815 ATP-grasp fold, subdomain 1 YPA_0330 IPR016185 Pre-ATP-grasp domain YPA_0331 IPR006700 Ribosomal RNA small subunit methyltransferase E YPA_0331 IPR015947 PUA-like domain YPA_0331 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal YPA_0331 IPR029028 Alpha/beta knot methyltransferases YPA_0333 IPR007346 Endonuclease I YPA_0334 IPR006640 Domain of unknown function SprT-like YPA_0334 IPR023483 Uncharacterised protein family SprT YPA_0334 IPR035240 YPA_0334 YPA_0335 IPR002133 S-adenosylmethionine synthetase YPA_0335 IPR022628 S-adenosylmethionine synthetase, N-terminal YPA_0335 IPR022629 S-adenosylmethionine synthetase, central domain YPA_0335 IPR022630 S-adenosylmethionine synthetase, C-terminal YPA_0335 IPR022631 S-adenosylmethionine synthetase, conserved site YPA_0335 IPR022636 S-adenosylmethionine synthetase superfamily YPA_0336 IPR000183 Ornithine/DAP/Arg decarboxylase YPA_0336 IPR002985 Arginine decarboxylase YPA_0336 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal YPA_0336 IPR022644 Orn/DAP/Arg decarboxylase 2, N-terminal YPA_0336 IPR022653 Orn/DAP/Arg decarboxylase 2, pyridoxal-phosphate binding site YPA_0336 IPR022657 Orn/DAP/Arg decarboxylase 2, conserved site YPA_0336 IPR029066 PLP-binding barrel YPA_0337 IPR002686 Transposase IS200-like YPA_0337 IPR036515 YPA_0337 YPA_0338 IPR017941 Rieske [2Fe-2S] iron-sulphur domain YPA_0338 IPR036922 YPA_0338 YPA_0339 IPR001915 Peptidase M48 YPA_0340 IPR005474 Transketolase, N-terminal YPA_0340 IPR005475 Transketolase-like, pyrimidine-binding domain YPA_0340 IPR005478 Transketolase, bacterial-like YPA_0340 IPR009014 Transketolase, C-terminal/Pyruvate-ferredoxin oxidoreductase, domain II YPA_0340 IPR020826 Transketolase binding site YPA_0340 IPR029061 Thiamin diphosphate-binding fold YPA_0340 IPR033248 YPA_0340 YPA_0341 IPR002686 Transposase IS200-like YPA_0341 IPR036515 YPA_0341 YPA_0342 IPR006422 D-erythrose-4-phosphate dehydrogenase YPA_0342 IPR020828 Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain YPA_0342 IPR020829 Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain YPA_0342 IPR020830 Glyceraldehyde 3-phosphate dehydrogenase, active site YPA_0342 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family YPA_0342 IPR036291 YPA_0342 YPA_0343 IPR001576 Phosphoglycerate kinase YPA_0343 IPR015824 Phosphoglycerate kinase, N-terminal YPA_0343 IPR015911 Phosphoglycerate kinase, conserved site YPA_0343 IPR036043 YPA_0343 YPA_0344 IPR000771 Ketose-bisphosphate aldolase, class-II YPA_0344 IPR006411 Fructose-bisphosphate aldolase, class II, yeast/E. coli subtype YPA_0344 IPR013785 Aldolase-type TIM barrel YPA_0345 IPR006685 Mechanosensitive ion channel MscS YPA_0345 IPR006686 Mechanosensitive ion channel MscS, conserved site YPA_0345 IPR008910 Conserved TM helix YPA_0345 IPR010920 Like-Sm (LSM) domain YPA_0345 IPR011014 Mechanosensitive ion channel MscS, transmembrane-2 YPA_0345 IPR011066 Mechanosensitive ion channel MscS, C-terminal YPA_0345 IPR023408 YPA_0345 YPA_0346 IPR001123 Lysine-type exporter protein (LYSE/YGGA) YPA_0347 IPR001270 ClpA/B family YPA_0347 IPR002611 IstB-like ATP-binding protein YPA_0347 IPR003593 AAA+ ATPase domain YPA_0347 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPA_0347 IPR028350 DNA replication protein DnaC/insertion sequence putative ATP-binding protein YPA_0348 IPR001584 Integrase, catalytic core YPA_0348 IPR006120 Resolvase, HTH domain YPA_0348 IPR009057 Homeodomain-like YPA_0348 IPR012337 Ribonuclease H-like domain YPA_0349 IPR001123 Lysine-type exporter protein (LYSE/YGGA) YPA_0350 IPR007497 Protein of unknown function DUF541 YPA_0351 IPR000847 Transcription regulator HTH, LysR YPA_0351 IPR005119 LysR, substrate-binding YPA_0351 IPR017685 Transcription regulator ArgP YPA_0351 IPR023490 Chromosome initiation inhibitor YPA_0351 IPR036388 YPA_0351 YPA_0351 IPR036390 YPA_0351 YPA_0352 IPR004788 Ribose 5-phosphate isomerase, type A YPA_0352 IPR020672 Ribose-5-phosphate isomerase, type A, subgroup YPA_0352 IPR037171 YPA_0352 YPA_0353 IPR002912 ACT domain YPA_0353 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain YPA_0353 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain YPA_0353 IPR029752 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site 1 YPA_0353 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site YPA_0353 IPR036291 YPA_0353 YPA_0354 IPR002698 5-formyltetrahydrofolate cyclo-ligase YPA_0354 IPR024185 5-formyltetrahydrofolate cyclo-ligase-like domain YPA_0354 IPR037171 YPA_0354 YPA_0355 IPR007838 Cell division protein ZapA-like YPA_0355 IPR023771 Cell division protein ZapA, eubacteria YPA_0355 IPR036192 YPA_0355 YPA_0356 IPR011978 Uncharacterised protein family UPF0149 YPA_0356 IPR036255 YPA_0356 YPA_0357 IPR000994 Peptidase M24, structural domain YPA_0357 IPR001131 Peptidase M24B, X-Pro dipeptidase/aminopeptidase P, conserved site YPA_0357 IPR001714 Peptidase M24, methionine aminopeptidase YPA_0357 IPR007865 Aminopeptidase P, N-terminal YPA_0357 IPR029149 Creatinase/Aminopeptidase P/Spt16, N-terminal YPA_0357 IPR036005 YPA_0357 YPA_0358 IPR002938 Monooxygenase, FAD-binding YPA_0358 IPR010971 Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/UbiI/COQ6 YPA_0358 IPR011295 2-polyprenyl-6-methoxyphenol 4-hydroxylase YPA_0358 IPR018168 Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6, conserved site YPA_0358 IPR036188 YPA_0358 YPA_0359 IPR002938 Monooxygenase, FAD-binding YPA_0359 IPR010971 Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/UbiI/COQ6 YPA_0359 IPR018168 Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6, conserved site YPA_0359 IPR036188 YPA_0359 YPA_0360 IPR006222 Glycine cleavage T-protein, N-terminal YPA_0360 IPR006223 Glycine cleavage system T protein YPA_0360 IPR013977 Glycine cleavage T-protein, C-terminal barrel domain YPA_0360 IPR022903 Glycine cleavage system T protein, bacteria YPA_0360 IPR027266 GTP-binding protein TrmE/Glycine cleavage system T protein, domain 1 YPA_0360 IPR028896 Aminomethyltransferase/Dimethylsulfonioproprionate demethylase DmdA YPA_0360 IPR029043 Glycine cleavage T-protein/YgfZ, C-terminal domain YPA_0361 IPR002930 Glycine cleavage system H-protein YPA_0361 IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site YPA_0361 IPR011053 Single hybrid motif YPA_0361 IPR017453 Glycine cleavage system H-protein, subgroup YPA_0361 IPR033753 YPA_0361 YPA_0362 IPR003437 Glycine cleavage system P protein, homodimeric YPA_0362 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 YPA_0362 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 YPA_0362 IPR015424 Pyridoxal phosphate-dependent transferase YPA_0362 IPR020581 Glycine cleavage system P protein YPA_0363 IPR024311 Lipocalin-like domain YPA_0366 IPR005594 YadA-like, C-terminal YPA_0366 IPR008635 Coiled stalk of trimeric autotransporter adhesin YPA_0366 IPR008640 Head domain of trimeric autotransporter adhesin YPA_0366 IPR011049 Serralysin-like metalloprotease, C-terminal YPA_0368 IPR004254 Hly-III-related YPA_0368 IPR005744 HylII YPA_0369 IPR018681 Protein of unknown function DUF2165, transmembrane YPA_0370 IPR006222 Glycine cleavage T-protein, N-terminal YPA_0370 IPR017703 YgfZ/GcvT conserved site YPA_0370 IPR023758 tRNA-modifying protein YgfZ YPA_0370 IPR028896 Aminomethyltransferase/Dimethylsulfonioproprionate demethylase DmdA YPA_0370 IPR029043 Glycine cleavage T-protein/YgfZ, C-terminal domain YPA_0371 IPR005631 Flavinator of succinate dehydrogenase YPA_0371 IPR036714 YPA_0371 YPA_0372 IPR009883 Protein of unknown function DUF1434 YPA_0373 IPR001789 Signal transduction response regulator, receiver domain YPA_0373 IPR001867 Signal transduction response regulator, C-terminal YPA_0373 IPR011006 CheY-like superfamily YPA_0373 IPR016032 Signal transduction response regulator, C-terminal effector YPA_0373 IPR036388 YPA_0373 YPA_0374 IPR003594 Histidine kinase-like ATPase, C-terminal domain YPA_0374 IPR003661 Signal transduction histidine kinase EnvZ-like, dimerisation/phosphoacceptor domain YPA_0374 IPR004358 Signal transduction histidine kinase-related protein, C-terminal YPA_0374 IPR029150 Sensory domain of two-component sensor kinase YPA_0374 IPR029151 Periplasmic sensor domain-like YPA_0374 IPR036097 YPA_0374 YPA_0374 IPR036890 YPA_0374 YPA_0375 IPR010364 Uncharacterised protein family, inner membrane CreD YPA_0376 IPR001226 Flavodoxin, conserved site YPA_0376 IPR008254 Flavodoxin/nitric oxide synthase YPA_0376 IPR010086 Flavodoxin, long chain YPA_0376 IPR029039 Flavoprotein-like YPA_0377 IPR002104 Integrase, catalytic YPA_0377 IPR004107 Integrase, SAM-like, N-terminal YPA_0377 IPR010998 Integrase, Lambda-type, N-terminal YPA_0377 IPR011010 DNA breaking-rejoining enzyme, catalytic core YPA_0377 IPR011932 Tyrosine recombinase XerD YPA_0377 IPR013762 Integrase-like, catalytic core YPA_0377 IPR023009 Tyrosine recombinase XerC/XerD YPA_0378 IPR009094 Disulphide bond isomerase, DsbC, N-terminal YPA_0378 IPR012336 Thioredoxin-like fold YPA_0378 IPR017937 Thioredoxin, conserved site YPA_0378 IPR018950 Disulphide bond isomerase, DsbC/G, N-terminal YPA_0378 IPR036249 YPA_0378 YPA_0379 IPR001667 DDH domain YPA_0379 IPR003156 DHHA1 domain YPA_0379 IPR004610 Bacterial RecJ exonuclease YPA_0379 IPR038763 YPA_0379 YPA_0380 IPR000352 Peptide chain release factor class I/class II YPA_0380 IPR004374 Peptide chain release factor 2 YPA_0380 IPR005139 Peptide chain release factor YPA_0381 IPR002313 Lysine-tRNA ligase, class II YPA_0381 IPR004364 Aminoacyl-tRNA synthetase, class II (D/K/N) YPA_0381 IPR004365 OB-fold nucleic acid binding domain, AA-tRNA synthetase-type YPA_0381 IPR012340 Nucleic acid-binding, OB-fold YPA_0381 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal YPA_0381 IPR034762 YPA_0381 YPA_0382 IPR025166 Domain of unknown function DUF4102 YPA_0382 IPR038488 YPA_0382 YPA_0383 IPR001270 ClpA/B family YPA_0383 IPR002611 IstB-like ATP-binding protein YPA_0383 IPR003593 AAA+ ATPase domain YPA_0383 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPA_0383 IPR028350 DNA replication protein DnaC/insertion sequence putative ATP-binding protein YPA_0384 IPR001584 Integrase, catalytic core YPA_0384 IPR006120 Resolvase, HTH domain YPA_0384 IPR009057 Homeodomain-like YPA_0384 IPR012337 Ribonuclease H-like domain YPA_0385 IPR002104 Integrase, catalytic YPA_0385 IPR010998 Integrase, Lambda-type, N-terminal YPA_0385 IPR011010 DNA breaking-rejoining enzyme, catalytic core YPA_0385 IPR013762 Integrase-like, catalytic core YPA_0388 IPR007712 Toxin-antitoxin system, RelE/ParE toxin family YPA_0388 IPR035093 YPA_0388 YPA_0389 IPR001387 Cro/C1-type helix-turn-helix domain YPA_0389 IPR010982 Lambda repressor-like, DNA-binding domain YPA_0390 IPR031451 YPA_0390 YPA_0390 IPR038493 YPA_0390 YPA_0391 IPR001387 Cro/C1-type helix-turn-helix domain YPA_0391 IPR010982 Lambda repressor-like, DNA-binding domain YPA_0391 IPR022452 Zinc finger/helix-turn-helix protein, YgiT YPA_0391 IPR022453 Zinc finger, YgiT-type YPA_0391 IPR032758 YPA_0391 YPA_0392 IPR004968 DNA primase/nucleoside triphosphatase, C-terminal YPA_0392 IPR006171 Toprim domain YPA_0392 IPR013237 Bacteriophage T7, Gp4, DNA primase/helicase, N-terminal YPA_0392 IPR014818 Bacteriophage/plasmid primase, P4, C-terminal YPA_0392 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPA_0392 IPR036388 YPA_0392 YPA_0392 IPR036390 YPA_0392 YPA_0394 IPR009241 Addiction module killer protein YPA_0395 IPR009061 DNA binding domain, putative YPA_0395 IPR010260 Bacteriophage P4, Orf88 YPA_0399 IPR003812 Fido domain YPA_0399 IPR036597 YPA_0399 YPA_0400 IPR008727 PAAR motif YPA_0400 IPR016128 Pyosin/cloacin translocation domain YPA_0400 IPR036302 YPA_0400 YPA_0401 IPR025983 Cysteine-rich CPCC domain YPA_0403 IPR021488 Protein of unknown function DUF3142 YPA_0405 IPR008727 PAAR motif YPA_0406 IPR024476 Protein of unknown function DUF3861 YPA_0407 IPR005149 Transcription regulator PadR N-terminal YPA_0407 IPR036388 YPA_0407 YPA_0407 IPR036390 YPA_0407 YPA_0408 IPR024453 YPA_0408 YPA_0408 IPR038765 YPA_0408 YPA_0410 IPR025997 Periplasmic binding protein domain YPA_0410 IPR028082 Periplasmic binding protein-like I YPA_0411 IPR001851 ABC transporter, permease YPA_0412 IPR003439 ABC transporter-like YPA_0412 IPR003593 AAA+ ATPase domain YPA_0412 IPR017871 ABC transporter, conserved site YPA_0412 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPA_0413 IPR003439 ABC transporter-like YPA_0413 IPR003593 AAA+ ATPase domain YPA_0413 IPR008995 Molybdate/tungstate binding, C-terminal YPA_0413 IPR013611 Transport-associated OB, type 2 YPA_0413 IPR017871 ABC transporter, conserved site YPA_0413 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPA_0414 IPR006059 Bacterial extracellular solute-binding, family 1 YPA_0414 IPR006060 Maltose binding protein YPA_0415 IPR000515 MetI-like domain YPA_0415 IPR035906 YPA_0415 YPA_0416 IPR000515 MetI-like domain YPA_0416 IPR035906 YPA_0416 YPA_0417 IPR011683 Glycosyl hydrolase family 53 YPA_0417 IPR017853 Glycoside hydrolase, superfamily YPA_0418 IPR003476 Glycoside hydrolase, family 42 YPA_0418 IPR013529 Glycoside hydrolase, family 42, N-terminal YPA_0418 IPR013738 Beta-galactosidase trimerisation YPA_0418 IPR013739 Beta-galactosidase C-terminal YPA_0418 IPR013780 Glycosyl hydrolase, family 13, all-beta YPA_0418 IPR017853 Glycoside hydrolase, superfamily YPA_0418 IPR029062 Class I glutamine amidotransferase-like YPA_0419 IPR001996 Phosphotransferase system, IIB component, type 1 YPA_0419 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site YPA_0419 IPR036878 YPA_0419 YPA_0420 IPR003192 Porin, LamB type YPA_0420 IPR023738 Maltoporin YPA_0420 IPR036998 YPA_0420 YPA_0421 IPR000843 Transcription regulator HTH, LacI YPA_0421 IPR010982 Lambda repressor-like, DNA-binding domain YPA_0421 IPR028082 Periplasmic binding protein-like I YPA_0422 IPR000322 Glycoside hydrolase, family 31 YPA_0422 IPR011013 Galactose mutarotase-like domain YPA_0422 IPR013780 Glycosyl hydrolase, family 13, all-beta YPA_0422 IPR017853 Glycoside hydrolase, superfamily YPA_0422 IPR025887 Glycoside hydrolase family 31, N-terminal domain YPA_0422 IPR033403 YPA_0422 YPA_0423 IPR011701 Major facilitator superfamily YPA_0423 IPR036259 YPA_0423 YPA_0424 IPR000843 Transcription regulator HTH, LacI YPA_0424 IPR010982 Lambda repressor-like, DNA-binding domain YPA_0424 IPR028082 Periplasmic binding protein-like I YPA_0425 IPR002818 ThiJ/PfpI YPA_0425 IPR029062 Class I glutamine amidotransferase-like YPA_0426 IPR000771 Ketose-bisphosphate aldolase, class-II YPA_0426 IPR011288 D-tagatose-bisphosphate aldolase, class II, subunit KbaY/GatY YPA_0426 IPR013785 Aldolase-type TIM barrel YPA_0427 IPR016624 Uncharacterised conserved protein UCP014753 YPA_0428 IPR000917 Sulfatase YPA_0428 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha YPA_0428 IPR017850 Alkaline-phosphatase-like, core domain YPA_0428 IPR024607 Sulfatase, conserved site YPA_0429 IPR007197 Radical SAM YPA_0429 IPR013785 Aldolase-type TIM barrel YPA_0429 IPR023885 4Fe4S-binding SPASM domain YPA_0430 IPR008928 Six-hairpin glycosidase-like YPA_0430 IPR010905 Glycosyl hydrolase, family 88 YPA_0430 IPR012341 Six-hairpin glycosidase YPA_0431 IPR002347 Glucose/ribitol dehydrogenase YPA_0431 IPR011286 2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase YPA_0431 IPR020904 Short-chain dehydrogenase/reductase, conserved site YPA_0431 IPR036291 YPA_0431 YPA_0432 IPR003764 N-acetylglucosamine-6-phosphate deacetylase YPA_0432 IPR006680 Amidohydrolase 1 YPA_0432 IPR011059 Metal-dependent hydrolase, composite domain YPA_0432 IPR032466 YPA_0432 YPA_0433 IPR004701 Phosphotransferase system, mannose-type IIA component YPA_0433 IPR036662 YPA_0433 YPA_0434 IPR004704 Phosphotransferase system, mannose/fructose/sorbose family IID component YPA_0435 IPR004700 Phosphotransferase system, sorbose-specific IIC subunit YPA_0436 IPR004720 Phosphotransferase system, sorbose subfamily IIB component YPA_0436 IPR018455 Phosphotransferase system, sorbose subfamily IIB component, subgroup YPA_0436 IPR036667 YPA_0436 YPA_0437 IPR001347 Sugar isomerase (SIS) YPA_0437 IPR014180 Sugar isomerase, AgaS YPA_0438 IPR012062 D-tagatose-bisphosphate aldolase, class II, non-catalytic subunit GatZ/KbaZ YPA_0438 IPR013785 Aldolase-type TIM barrel YPA_0439 IPR001034 HTH DeoR N-terminal domain YPA_0439 IPR014036 DeoR C-terminal sensor domain YPA_0439 IPR036388 YPA_0439 YPA_0439 IPR036390 YPA_0439 YPA_0439 IPR037171 YPA_0439 YPA_0440 IPR000917 Sulfatase YPA_0440 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha YPA_0440 IPR017850 Alkaline-phosphatase-like, core domain YPA_0441 IPR002686 Transposase IS200-like YPA_0441 IPR036515 YPA_0441 YPA_0442 IPR001584 Integrase, catalytic core YPA_0442 IPR006120 Resolvase, HTH domain YPA_0442 IPR009057 Homeodomain-like YPA_0442 IPR012337 Ribonuclease H-like domain YPA_0443 IPR001270 ClpA/B family YPA_0443 IPR002611 IstB-like ATP-binding protein YPA_0443 IPR003593 AAA+ ATPase domain YPA_0443 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPA_0443 IPR028350 DNA replication protein DnaC/insertion sequence putative ATP-binding protein YPA_0445 IPR003159 Polysaccharide lyase family 8, central domain YPA_0445 IPR004103 Polysaccharide lyase family 8, C-terminal YPA_0445 IPR008929 Chondroitin AC/alginate lyase YPA_0445 IPR008979 Galactose-binding domain-like YPA_0445 IPR011013 Galactose mutarotase-like domain YPA_0445 IPR011071 Polysaccharide lyase family 8-like, C-terminal YPA_0445 IPR014718 Glycoside hydrolase-type carbohydrate-binding, subgroup YPA_0445 IPR015176 Lyase, N-terminal YPA_0445 IPR015177 Lyase, catalytic YPA_0445 IPR024200 Chondroitin sulfate ABC endolyase YPA_0446 IPR005546 Autotransporter beta-domain YPA_0446 IPR006315 Outer membrane autotransporter barrel YPA_0446 IPR036709 YPA_0446 YPA_0447 IPR031605 YPA_0447 YPA_0450 IPR001765 Carbonic anhydrase YPA_0450 IPR019546 Twin-arginine translocation pathway, signal sequence, bacterial/archaeal YPA_0450 IPR036874 YPA_0450 YPA_0451 IPR016032 Signal transduction response regulator, C-terminal effector YPA_0451 IPR036388 YPA_0451 YPA_0452 IPR024961 YPA_0452 YPA_0453 IPR001775 GspD/PilQ family YPA_0453 IPR004845 Type II secretion system GspD, conserved site YPA_0453 IPR004846 Type II/III secretion system YPA_0453 IPR005644 NolW-like YPA_0453 IPR013356 Type II secretion system GspD YPA_0453 IPR038591 YPA_0453 YPA_0454 IPR001482 Type II secretion system protein E YPA_0454 IPR003593 AAA+ ATPase domain YPA_0454 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPA_0455 IPR001992 Type II secretion system conserved site YPA_0455 IPR003004 GspF/PilC family YPA_0455 IPR018076 Type II secretion system F domain YPA_0456 IPR000983 Bacterial general secretion pathway protein G-type pilin YPA_0456 IPR010054 General secretion pathway protein G YPA_0456 IPR012902 Prokaryotic N-terminal methylation site YPA_0456 IPR013545 Type II secretion system protein G YPA_0457 IPR002416 Type II secretion system protein H YPA_0457 IPR012902 Prokaryotic N-terminal methylation site YPA_0458 IPR003413 Type II secretion system protein I domain YPA_0458 IPR010052 Type II secretion system protein I YPA_0459 IPR010055 Type II secretion system protein J YPA_0459 IPR012902 Prokaryotic N-terminal methylation site YPA_0460 IPR005628 General secretion pathway protein K YPA_0460 IPR038072 YPA_0460 YPA_0461 IPR007812 Type II secretion system protein L YPA_0461 IPR024230 GspL, cytoplasmic actin-ATPase-like domain YPA_0461 IPR025691 GspL periplasmic domain YPA_0463 IPR000045 Prepilin type IV endopeptidase, peptidase domain YPA_0463 IPR010627 Peptidase A24A, N-terminal YPA_0463 IPR014032 Peptidase A24A, prepilin type IV, bacterial YPA_0464 IPR019114 Chaperone lipoprotein, PulS/OutS-like YPA_0464 IPR038432 YPA_0464 YPA_0465 IPR001867 Signal transduction response regulator, C-terminal YPA_0465 IPR016032 Signal transduction response regulator, C-terminal effector YPA_0465 IPR036388 YPA_0465 YPA_0467 IPR003122 Chemotaxis methyl-accepting receptor, ligand-binding YPA_0467 IPR003660 HAMP linker domain YPA_0467 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain YPA_0467 IPR004090 Chemotaxis methyl-accepting receptor YPA_0467 IPR035440 YPA_0467 YPA_0468 IPR001853 DSBA-like thioredoxin domain YPA_0468 IPR036249 YPA_0468 YPA_0469 IPR001279 Beta-lactamase-like YPA_0469 IPR036866 YPA_0469 YPA_0470 IPR000847 Transcription regulator HTH, LysR YPA_0470 IPR005119 LysR, substrate-binding YPA_0470 IPR036388 YPA_0470 YPA_0470 IPR036390 YPA_0470 YPA_0471 IPR011701 Major facilitator superfamily YPA_0471 IPR036259 YPA_0471 YPA_0472 IPR000847 Transcription regulator HTH, LysR YPA_0472 IPR005119 LysR, substrate-binding YPA_0472 IPR036388 YPA_0472 YPA_0472 IPR036390 YPA_0472 YPA_0473 IPR000183 Ornithine/DAP/Arg decarboxylase YPA_0473 IPR002986 Diaminopimelate decarboxylase, LysA YPA_0473 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal YPA_0473 IPR022643 Orn/DAP/Arg decarboxylase 2, C-terminal YPA_0473 IPR022644 Orn/DAP/Arg decarboxylase 2, N-terminal YPA_0473 IPR022653 Orn/DAP/Arg decarboxylase 2, pyridoxal-phosphate binding site YPA_0473 IPR022657 Orn/DAP/Arg decarboxylase 2, conserved site YPA_0473 IPR029066 PLP-binding barrel YPA_0474 IPR000843 Transcription regulator HTH, LacI YPA_0474 IPR010982 Lambda repressor-like, DNA-binding domain YPA_0474 IPR028082 Periplasmic binding protein-like I YPA_0475 IPR006656 Molybdopterin oxidoreductase YPA_0475 IPR006657 Molydopterin dinucleotide-binding domain YPA_0475 IPR009010 Aspartate decarboxylase-like domain YPA_0476 IPR000873 AMP-dependent synthetase/ligase YPA_0476 IPR002123 Phospholipid/glycerol acyltransferase YPA_0476 IPR020845 AMP-binding, conserved site YPA_0476 IPR023775 Bifunctional 2-acylglycerophosphoethanolamine acyltransferase/acyl synthetase Aas YPA_0476 IPR025110 AMP-binding enzyme C-terminal domain YPA_0477 IPR011701 Major facilitator superfamily YPA_0477 IPR023727 Lysophospholipid transporter LplT YPA_0477 IPR036259 YPA_0477 YPA_0479 IPR023210 NADP-dependent oxidoreductase domain YPA_0479 IPR036812 YPA_0479 YPA_0481 IPR004230 DNA mismatch repair protein MutH YPA_0481 IPR011335 Restriction endonuclease type II-like YPA_0481 IPR011337 DNA mismatch repair MutH/Restriction endonuclease, type II YPA_0481 IPR037057 YPA_0481 YPA_0482 IPR000086 NUDIX hydrolase domain YPA_0482 IPR015797 NUDIX hydrolase domain-like YPA_0482 IPR020084 NUDIX hydrolase, conserved site YPA_0482 IPR020476 NUDIX hydrolase YPA_0482 IPR022927 RNA pyrophosphohydrolase RppH YPA_0483 IPR000121 PEP-utilising enzyme, C-terminal YPA_0483 IPR003018 GAF domain YPA_0483 IPR006318 Phosphoenolpyruvate-utilising enzyme YPA_0483 IPR008279 PEP-utilising enzyme, mobile domain YPA_0483 IPR008731 Phosphotransferase system, enzyme I N-terminal YPA_0483 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain YPA_0483 IPR018274 PEP-utilising enzyme, active site YPA_0483 IPR023151 PEP-utilising enzyme, conserved site YPA_0483 IPR029016 GAF domain-like YPA_0483 IPR036618 YPA_0483 YPA_0483 IPR036637 YPA_0483 YPA_0484 IPR001640 Prolipoprotein diacylglyceryl transferase YPA_0485 IPR000398 Thymidylate synthase YPA_0485 IPR020940 Thymidylate synthase, active site YPA_0485 IPR023451 Thymidylate synthase/dCMP hydroxymethylase domain YPA_0485 IPR036926 YPA_0485 YPA_0486 IPR012902 Prokaryotic N-terminal methylation site YPA_0487 IPR012902 Prokaryotic N-terminal methylation site YPA_0487 IPR016419 Prepilin peptidase-dependent protein B, predicted YPA_0488 IPR019652 Protein of unknown function DUF2509 YPA_0489 IPR012902 Prokaryotic N-terminal methylation site YPA_0489 IPR022204 Prepilin peptidase dependent protein C YPA_0490 IPR006697 Exodeoxyribonuclease V, gamma subunit YPA_0490 IPR011335 Restriction endonuclease type II-like YPA_0490 IPR013986 DExx box DNA helicase domain YPA_0490 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPA_0491 IPR001431 Peptidase M16, zinc-binding site YPA_0491 IPR007863 Peptidase M16, C-terminal domain YPA_0491 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like YPA_0491 IPR011765 Peptidase M16, N-terminal YPA_0491 IPR032632 YPA_0491 YPA_0492 IPR004586 Exodeoxyribonuclease V, beta subunit YPA_0492 IPR011335 Restriction endonuclease type II-like YPA_0492 IPR011604 Exonuclease, phage-type/RecB, C-terminal YPA_0492 IPR014017 DNA helicase, UvrD-like, C-terminal YPA_0492 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPA_0492 IPR034739 YPA_0492 YPA_0493 IPR006344 Exodeoxyribonuclease V, alpha subunit YPA_0493 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPA_0493 IPR027785 UvrD-like helicase C-terminal domain YPA_0494 IPR000182 GNAT domain YPA_0494 IPR001048 Aspartate/glutamate/uridylate kinase YPA_0494 IPR010167 Amino-acid N-acetyltransferase (ArgA) YPA_0494 IPR016181 Acyl-CoA N-acyltransferase YPA_0494 IPR036393 YPA_0494 YPA_0495 IPR002508 Cell wall hydrolase/autolysin, catalytic YPA_0495 IPR021731 AMIN domain YPA_0496 IPR005300 Lytic transglycosylase MltA YPA_0496 IPR010611 3D domain YPA_0496 IPR026044 Membrane-bound lytic murein transglycosylase A YPA_0496 IPR036908 YPA_0496 YPA_0497 IPR000594 UBA/THIF-type NAD/FAD binding fold YPA_0497 IPR035985 YPA_0497 YPA_0498 IPR003808 Fe-S metabolism associated domain, SufE-like YPA_0498 IPR017763 Cysteine desulfurase, sulphur acceptor subunit CsdE YPA_0499 IPR000192 Aminotransferase class V domain YPA_0499 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 YPA_0499 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 YPA_0499 IPR015424 Pyridoxal phosphate-dependent transferase YPA_0499 IPR020578 Aminotransferase class-V pyridoxal-phosphate binding site YPA_0499 IPR022471 Cysteine desulphurase, catalytic subunit, CsdA YPA_0500 IPR000847 Transcription regulator HTH, LysR YPA_0500 IPR005119 LysR, substrate-binding YPA_0500 IPR036388 YPA_0500 YPA_0500 IPR036390 YPA_0500 YPA_0501 IPR006696 Protein of unknown function DUF423 YPA_0502 IPR002877 Ribosomal RNA methyltransferase FtsJ domain YPA_0502 IPR011224 Ribosomal RNA large subunit methyltransferase M YPA_0502 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase-like YPA_0504 IPR001584 Integrase, catalytic core YPA_0504 IPR006120 Resolvase, HTH domain YPA_0504 IPR009057 Homeodomain-like YPA_0504 IPR012337 Ribonuclease H-like domain YPA_0505 IPR001270 ClpA/B family YPA_0505 IPR002611 IstB-like ATP-binding protein YPA_0505 IPR003593 AAA+ ATPase domain YPA_0505 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPA_0505 IPR028350 DNA replication protein DnaC/insertion sequence putative ATP-binding protein YPA_0506 IPR002421 5'-3' exonuclease, N-terminal YPA_0506 IPR008918 Helix-hairpin-helix motif, class 2 YPA_0506 IPR020045 5'-3' exonuclease, C-terminal domain YPA_0506 IPR020046 5'-3' exonuclease, alpha-helical arch, N-terminal YPA_0506 IPR029060 PIN domain-like YPA_0506 IPR036279 YPA_0506 YPA_0507 IPR021826 Protein of unknown function DUF3412 YPA_0507 IPR027820 Domain of unknown function DUF4478 YPA_0507 IPR031100 YPA_0507 YPA_0507 IPR037153 YPA_0507 YPA_0508 IPR016428 NADPH-dependent 7-cyano-7-deazaguanine reductase, QueF type 2 YPA_0508 IPR029139 NADPH-dependent 7-cyano-7-deazaguanine reductase, N-terminal YPA_0508 IPR029500 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF YPA_0509 IPR009948 Syd YPA_0509 IPR038228 YPA_0509 YPA_0510 IPR002686 Transposase IS200-like YPA_0510 IPR036515 YPA_0510 YPA_0511 IPR007384 Protein of unknown function UCP006257 YPA_0511 IPR023376 YqcC-like domain YPA_0511 IPR036814 YPA_0511 YPA_0512 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F YPA_0512 IPR006224 Pseudouridine synthase, RluC/RluD, conserved site YPA_0512 IPR020103 Pseudouridine synthase, catalytic domain YPA_0513 IPR001094 Flavodoxin YPA_0513 IPR008254 Flavodoxin/nitric oxide synthase YPA_0513 IPR029039 Flavoprotein-like YPA_0514 IPR020911 Uncharacterised protein family UPF0325 YPA_0515 IPR001451 Bacterial transferase hexapeptide repeat YPA_0515 IPR005664 Tetrahydrodipicolinate N-succinyltransferase, transferase hexapeptide repeat family YPA_0515 IPR011004 Trimeric LpxA-like YPA_0515 IPR018357 Hexapeptide transferase, conserved site YPA_0515 IPR023180 Tetrahydrodipicolinate-N-succinyltransferase, chain A, domain 1 YPA_0515 IPR037133 YPA_0515 YPA_0516 IPR002912 ACT domain YPA_0516 IPR002934 Nucleotidyl transferase domain YPA_0516 IPR003607 HD/PDEase domain YPA_0516 IPR006674 HD domain YPA_0516 IPR010043 Protein-PII uridylyltransferase YPA_0516 IPR013546 PII-uridylyltransferase/Glutamine-synthetase adenylyltransferase YPA_0517 IPR000994 Peptidase M24, structural domain YPA_0517 IPR001714 Peptidase M24, methionine aminopeptidase YPA_0517 IPR002467 Peptidase M24A, methionine aminopeptidase, subfamily 1 YPA_0517 IPR036005 YPA_0517 YPA_0518 IPR001865 Ribosomal protein S2 YPA_0518 IPR005706 Ribosomal protein S2, bacteria/mitochondria/plastid YPA_0518 IPR018130 Ribosomal protein S2, conserved site YPA_0518 IPR023591 Ribosomal protein S2, flavodoxin-like domain YPA_0520 IPR001816 Translation elongation factor EFTs/EF1B YPA_0520 IPR009060 UBA-like YPA_0520 IPR014039 Translation elongation factor EFTs/EF1B, dimerisation YPA_0520 IPR018101 Translation elongation factor Ts, conserved site YPA_0520 IPR036402 YPA_0520 YPA_0521 IPR002686 Transposase IS200-like YPA_0521 IPR036515 YPA_0521 YPA_0522 IPR001048 Aspartate/glutamate/uridylate kinase YPA_0522 IPR011817 Uridylate kinase YPA_0522 IPR015963 Uridylate kinase, bacteria YPA_0522 IPR036393 YPA_0522 YPA_0523 IPR002661 Ribosome recycling factor YPA_0523 IPR023584 Ribosome recycling factor domain YPA_0523 IPR036191 YPA_0523 YPA_0524 IPR003821 1-deoxy-D-xylulose 5-phosphate reductoisomerase YPA_0524 IPR013512 1-deoxy-D-xylulose 5-phosphate reductoisomerase, N-terminal YPA_0524 IPR013644 1-deoxy-D-xylulose 5-phosphate reductoisomerase, C-terminal YPA_0524 IPR026877 DXP reductoisomerase C-terminal domain YPA_0524 IPR036169 YPA_0524 YPA_0524 IPR036291 YPA_0524 YPA_0525 IPR001441 Decaprenyl diphosphate synthase-like YPA_0525 IPR018520 Di-trans-poly-cis-decaprenylcistransferase-like, conserved site YPA_0525 IPR036424 YPA_0525 YPA_0526 IPR000374 Phosphatidate cytidylyltransferase YPA_0527 IPR001478 PDZ domain YPA_0527 IPR004387 Peptidase M50, putative membrane-associated zinc metallopeptidase YPA_0527 IPR008915 Peptidase M50 YPA_0527 IPR036034 YPA_0527 YPA_0528 IPR000184 Bacterial surface antigen (D15) YPA_0528 IPR010827 Surface antigen variable number YPA_0528 IPR023707 Outer membrane protein assembly factor BamA YPA_0529 IPR005632 Chaperone protein Skp YPA_0529 IPR024930 Skp domain YPA_0530 IPR001451 Bacterial transferase hexapeptide repeat YPA_0530 IPR007691 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase YPA_0530 IPR011004 Trimeric LpxA-like YPA_0530 IPR018357 Hexapeptide transferase, conserved site YPA_0530 IPR020573 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, non-repeat region YPA_0531 IPR010084 Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ YPA_0531 IPR013114 Beta-hydroxydecanoyl thiol ester dehydrase, FabA/FabZ YPA_0531 IPR029069 HotDog domain YPA_0532 IPR001451 Bacterial transferase hexapeptide repeat YPA_0532 IPR010137 Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase YPA_0532 IPR011004 Trimeric LpxA-like YPA_0532 IPR018357 Hexapeptide transferase, conserved site YPA_0532 IPR029098 Udp N-acetylglucosamine O-acyltransferase, C-terminal YPA_0532 IPR037157 YPA_0532 YPA_0533 IPR003835 Glycosyl transferase, family 19 YPA_0534 IPR012337 Ribonuclease H-like domain YPA_0534 IPR022898 Ribonuclease HII YPA_0534 IPR024567 Ribonuclease HII/HIII domain YPA_0534 IPR036397 YPA_0534 YPA_0535 IPR003141 Polymerase/histidinol phosphatase, N-terminal YPA_0535 IPR004013 PHP, C-terminal YPA_0535 IPR004365 OB-fold nucleic acid binding domain, AA-tRNA synthetase-type YPA_0535 IPR004805 DNA polymerase III, alpha subunit YPA_0535 IPR011708 Bacterial DNA polymerase III, alpha subunit YPA_0535 IPR016195 Polymerase/histidinol phosphatase-like YPA_0535 IPR029460 DNA polymerase, helix-hairpin-helix motif YPA_0536 IPR001095 Acetyl-CoA carboxylase, alpha subunit YPA_0536 IPR029045 ClpP/crotonase-like domain YPA_0537 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain YPA_0537 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase YPA_0538 IPR011063 tRNA(Ile)-lysidine/2-thiocytidine synthase YPA_0538 IPR012094 Lysidine-tRNA(Ile) synthetase YPA_0538 IPR012795 Lysidine-tRNA(Ile) synthetase, N-terminal YPA_0538 IPR012796 Lysidine-tRNA(Ile) synthetase, C-terminal YPA_0538 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold YPA_0538 IPR015262 Lysidine-tRNA(Ile) synthetase, substrate-binding domain YPA_0539 IPR008168 Cytochrome c, class IC YPA_0539 IPR009056 Cytochrome c-like domain YPA_0539 IPR036909 YPA_0539 YPA_0540 IPR009778 Modulator of Rho-dependent transcription termination YPA_0540 IPR023534 Rof/RNase P-like YPA_0540 IPR038626 YPA_0540 YPA_0541 IPR009624 Uncharacterised protein family UPF0253 YPA_0542 IPR009822 YaeQ YPA_0542 IPR011335 Restriction endonuclease type II-like YPA_0542 IPR038590 YPA_0542 YPA_0543 IPR000352 Peptide chain release factor class I/class II YPA_0544 IPR007298 Copper resistance lipoprotein NlpE YPA_0544 IPR033450 YPA_0544 YPA_0544 IPR038139 YPA_0544 YPA_0545 IPR002314 Aminoacyl-tRNA synthetase, class II (G/ H/ P/ S), conserved domain YPA_0545 IPR002316 Proline-tRNA ligase, class IIa YPA_0545 IPR004154 Anticodon-binding YPA_0545 IPR004500 Prolyl-tRNA synthetase, class IIa, bacterial-type YPA_0545 IPR007214 YbaK/aminoacyl-tRNA synthetase-associated domain YPA_0545 IPR023717 Prolyl-tRNA synthetase, class IIa, type 1 YPA_0545 IPR036621 YPA_0545 YPA_0545 IPR036754 YPA_0545 YPA_0546 IPR023368 Uncharacterised protein family UPF0066, conserved site YPA_0546 IPR023370 TsaA-like domain YPA_0546 IPR036413 YPA_0546 YPA_0546 IPR036414 YPA_0546 YPA_0547 IPR030852 YPA_0547 YPA_0548 IPR004872 Lipoprotein NlpA family YPA_0549 IPR000515 MetI-like domain YPA_0549 IPR035906 YPA_0549 YPA_0550 IPR003439 ABC transporter-like YPA_0550 IPR003593 AAA+ ATPase domain YPA_0550 IPR012692 ABC transporter, methionine import, ATP-binding protein MetN, proteobacteria YPA_0550 IPR017871 ABC transporter, conserved site YPA_0550 IPR018449 NIL domain YPA_0550 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPA_0551 IPR004446 D,D-heptose 1,7-bisphosphate phosphatase YPA_0551 IPR006543 Histidinol-phosphate phosphatase YPA_0551 IPR006549 HAD-superfamily hydrolase,subfamily IIIA YPA_0551 IPR023214 HAD-like domain YPA_0551 IPR036412 YPA_0551 YPA_0553 IPR018170 Aldo/keto reductase, conserved site YPA_0553 IPR020471 Aldo/keto reductase subgroup YPA_0553 IPR023210 NADP-dependent oxidoreductase domain YPA_0553 IPR036812 YPA_0553 YPA_0555 IPR005135 Endonuclease/exonuclease/phosphatase YPA_0555 IPR036691 YPA_0555 YPA_0556 IPR000189 Prokaryotic transglycosylase, active site YPA_0556 IPR008258 Lytic transglycosylase-like SLT domain YPA_0556 IPR018392 LysM domain YPA_0556 IPR023346 Lysozyme-like domain YPA_0556 IPR036779 YPA_0556 YPA_0557 IPR001279 Beta-lactamase-like YPA_0557 IPR017782 Hydroxyacylglutathione hydrolase YPA_0557 IPR032282 YPA_0557 YPA_0557 IPR036866 YPA_0557 YPA_0558 IPR013216 Methyltransferase type 11 YPA_0558 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase-like YPA_0559 IPR002156 Ribonuclease H domain YPA_0559 IPR012337 Ribonuclease H-like domain YPA_0559 IPR022892 Ribonuclease H YPA_0559 IPR036397 YPA_0559 YPA_0560 IPR006054 DNA polymerase III, epsilon subunit YPA_0560 IPR006309 DNA polymerase 3, epsilon subunit YPA_0560 IPR012337 Ribonuclease H-like domain YPA_0560 IPR013520 Exonuclease, RNase T/DNA polymerase III YPA_0560 IPR036397 YPA_0560 YPA_0561 IPR001248 Permease, cytosine/purines, uracil, thiamine, allantoin YPA_0561 IPR038271 YPA_0561 YPA_0562 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel YPA_0563 IPR001270 ClpA/B family YPA_0563 IPR002611 IstB-like ATP-binding protein YPA_0563 IPR003593 AAA+ ATPase domain YPA_0563 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPA_0563 IPR028350 DNA replication protein DnaC/insertion sequence putative ATP-binding protein YPA_0564 IPR001584 Integrase, catalytic core YPA_0564 IPR006120 Resolvase, HTH domain YPA_0564 IPR009057 Homeodomain-like YPA_0564 IPR012337 Ribonuclease H-like domain YPA_0565 IPR038488 YPA_0565 YPA_0566 IPR009241 Addiction module killer protein YPA_0566 IPR014056 Addiction module killer protein, predicted YPA_0567 IPR010982 Lambda repressor-like, DNA-binding domain YPA_0567 IPR014057 Addiction module antidote protein, HI1420 YPA_0568 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPA_0569 IPR006171 Toprim domain YPA_0569 IPR013237 Bacteriophage T7, Gp4, DNA primase/helicase, N-terminal YPA_0570 IPR018880 Bacteriophage P4, Ash protein YPA_0571 IPR010260 Bacteriophage P4, Orf88 YPA_0572 IPR010998 Integrase, Lambda-type, N-terminal YPA_0572 IPR011010 DNA breaking-rejoining enzyme, catalytic core YPA_0572 IPR013762 Integrase-like, catalytic core YPA_0572 IPR024456 Integrase catalytic domain, putative YPA_0572 IPR024457 Putative integrase, N-terminal YPA_0576 IPR025382 Domain of unknown function DUF4297 YPA_0577 IPR002104 Integrase, catalytic YPA_0577 IPR010998 Integrase, Lambda-type, N-terminal YPA_0577 IPR011010 DNA breaking-rejoining enzyme, catalytic core YPA_0577 IPR013762 Integrase-like, catalytic core YPA_0577 IPR025166 Domain of unknown function DUF4102 YPA_0577 IPR038488 YPA_0577 YPA_0578 IPR002686 Transposase IS200-like YPA_0578 IPR036515 YPA_0578 YPA_0579 IPR000037 SsrA-binding protein YPA_0579 IPR020081 SsrA-binding protein, conserved site YPA_0579 IPR023620 Small protein B YPA_0580 IPR005031 Streptomyces cyclase/dehydrase YPA_0580 IPR023393 START-like domain YPA_0581 IPR005346 RnfH protein YPA_0581 IPR016155 Molybdopterin synthase/thiamin biosynthesis sulphur carrier, beta-grasp YPA_0581 IPR037021 YPA_0581 YPA_0582 IPR007450 Lipoprotein SmpA/OmlA YPA_0582 IPR026592 Outer membrane protein assembly factor BamE YPA_0582 IPR037873 YPA_0582 YPA_0583 IPR003395 RecF/RecN/SMC, N-terminal YPA_0583 IPR004604 DNA recombination/repair protein RecN YPA_0583 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPA_0584 IPR002504 Inorganic polyphosphate/ATP-NAD kinase YPA_0584 IPR016064 ATP-NAD kinase-like domain YPA_0584 IPR017437 ATP-NAD kinase, PpnK-type, all-beta YPA_0584 IPR017438 Inorganic polyphosphate/ATP-NAD kinase, domain 1 YPA_0585 IPR000740 GrpE nucleotide exchange factor YPA_0585 IPR009012 GrpE nucleotide exchange factor, head YPA_0585 IPR013805 GrpE nucleotide exchange factor, coiled-coil YPA_0586 IPR002020 Citrate synthase-like YPA_0586 IPR010953 Citrate synthase, type I YPA_0586 IPR016142 Citrate synthase-like, large alpha subdomain YPA_0586 IPR016143 Citrate synthase-like, small alpha subdomain YPA_0586 IPR019810 Citrate synthase active site YPA_0586 IPR024176 Citrate synthase, bacterial-type YPA_0586 IPR036969 YPA_0586 YPA_0587 IPR000701 Succinate dehydrogenase/Fumarate reductase, transmembrane subunit YPA_0587 IPR014314 Succinate dehydrogenase, cytochrome b556 subunit YPA_0587 IPR018495 Succinate dehydrogenase, cytochrome b subunit, conserved site YPA_0587 IPR034804 YPA_0587 YPA_0588 IPR014312 Succinate dehydrogenase, hydrophobic membrane anchor YPA_0588 IPR034804 YPA_0588 YPA_0589 IPR003952 Fumarate reductase/succinate dehydrogenase, FAD-binding site YPA_0589 IPR003953 FAD binding domain YPA_0589 IPR011281 Succinate dehydrogenase, flavoprotein subunit YPA_0589 IPR014006 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit YPA_0589 IPR015939 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal YPA_0589 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain YPA_0589 IPR036188 YPA_0589 YPA_0589 IPR037099 YPA_0589 YPA_0590 IPR004489 Succinate dehydrogenase/fumarate reductase iron-sulphur protein YPA_0590 IPR009051 Alpha-helical ferredoxin YPA_0590 IPR012675 Beta-grasp domain YPA_0590 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site YPA_0590 IPR025192 Succinate dehydogenase/fumarate reductase N-terminal YPA_0590 IPR036010 YPA_0590 YPA_0591 IPR001017 Dehydrogenase, E1 component YPA_0591 IPR005475 Transketolase-like, pyrimidine-binding domain YPA_0591 IPR011603 2-oxoglutarate dehydrogenase E1 component YPA_0591 IPR029061 Thiamin diphosphate-binding fold YPA_0591 IPR031717 YPA_0591 YPA_0591 IPR032106 YPA_0591 YPA_0592 IPR000089 Biotin/lipoyl attachment YPA_0592 IPR001078 2-oxoacid dehydrogenase acyltransferase, catalytic domain YPA_0592 IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site YPA_0592 IPR004167 E3 binding YPA_0592 IPR006255 Dihydrolipoamide succinyltransferase YPA_0592 IPR011053 Single hybrid motif YPA_0592 IPR023213 Chloramphenicol acetyltransferase-like domain YPA_0592 IPR036625 YPA_0592 YPA_0593 IPR005809 Succinyl-CoA synthetase, beta subunit YPA_0593 IPR005811 ATP-citrate lyase/succinyl-CoA ligase YPA_0593 IPR013650 ATP-grasp fold, succinyl-CoA synthetase-type YPA_0593 IPR013815 ATP-grasp fold, subdomain 1 YPA_0593 IPR016102 Succinyl-CoA synthetase-like YPA_0593 IPR017866 Succinyl-CoA synthetase, beta subunit, conserved site YPA_0594 IPR003781 CoA-binding YPA_0594 IPR005810 Succinyl-CoA ligase, alpha subunit YPA_0594 IPR005811 ATP-citrate lyase/succinyl-CoA ligase YPA_0594 IPR016102 Succinyl-CoA synthetase-like YPA_0594 IPR017440 ATP-citrate lyase/succinyl-CoA ligase, active site YPA_0594 IPR033847 YPA_0594 YPA_0594 IPR036291 YPA_0594 YPA_0595 IPR002585 Cytochrome d ubiquinol oxidase, subunit I YPA_0596 IPR003317 Cytochrome d ubiquinol oxidase, subunit II YPA_0597 IPR011846 Cyd operon protein YbgE YPA_0598 IPR006683 Thioesterase superfamily YPA_0598 IPR006684 Acyl-CoA thioester hydrolase YbgC/YbaW family YPA_0598 IPR014166 Tol-Pal system-associated acyl-CoA thioesterase YPA_0598 IPR029069 HotDog domain YPA_0599 IPR002898 MotA/TolQ/ExbB proton channel YPA_0599 IPR014163 Tol-Pal system, TolQ YPA_0600 IPR003400 Biopolymer transport protein ExbD/TolR YPA_0600 IPR014168 Biopolymer transport, TolR YPA_0601 IPR014161 Tol-Pal system, TolA YPA_0602 IPR007195 TolB, N-terminal YPA_0602 IPR011042 Six-bladed beta-propeller, TolB-like YPA_0602 IPR011659 WD40-like Beta Propeller YPA_0602 IPR014167 Tol-Pal system beta propeller repeat-containing protein, TolB YPA_0602 IPR036752 YPA_0602 YPA_0603 IPR006664 Outer membrane protein, bacterial YPA_0603 IPR006665 Outer membrane protein, OmpA/MotB, C-terminal YPA_0603 IPR006690 Outer membrane protein, OmpA-like, conserved site YPA_0603 IPR014169 Peptidoglycan-associated lipoprotein YPA_0603 IPR036737 YPA_0603 YPA_0603 IPR039001 YPA_0603 YPA_0604 IPR011990 Tetratricopeptide-like helical domain YPA_0604 IPR014162 Tol-Pal system, YbgF YPA_0604 IPR019734 Tetratricopeptide repeat YPA_0604 IPR032519 YPA_0604 YPA_0604 IPR034706 YPA_0604 YPA_0605 IPR003473 Quinolinate synthetase A YPA_0605 IPR023513 Quinolinate synthase A, type 1 YPA_0605 IPR036094 YPA_0605 YPA_0606 IPR006419 Nicotinamide mononucleotide transporter PnuC YPA_0607 IPR002524 Cation efflux protein YPA_0607 IPR023500 Zinc transporter ZitB YPA_0607 IPR027469 Cation efflux protein transmembrane domain YPA_0607 IPR036837 YPA_0607 YPA_0608 IPR006218 DAHP synthetase I/KDSA YPA_0608 IPR006219 DHAP synthase, class 1 YPA_0608 IPR013785 Aldolase-type TIM barrel YPA_0609 IPR001270 ClpA/B family YPA_0609 IPR002611 IstB-like ATP-binding protein YPA_0609 IPR003593 AAA+ ATPase domain YPA_0609 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPA_0609 IPR028350 DNA replication protein DnaC/insertion sequence putative ATP-binding protein YPA_0610 IPR001584 Integrase, catalytic core YPA_0610 IPR006120 Resolvase, HTH domain YPA_0610 IPR009057 Homeodomain-like YPA_0610 IPR012337 Ribonuclease H-like domain YPA_0611 IPR001967 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A, N-terminal YPA_0611 IPR012338 Beta-lactamase/transpeptidase-like YPA_0611 IPR012907 Peptidase S11, D-Ala-D-Ala carboxypeptidase A, C-terminal YPA_0611 IPR015956 Penicillin-binding protein-associated YPA_0611 IPR037167 YPA_0611 YPA_0612 IPR004694 Hydroxy amino acid transporter YPA_0612 IPR018227 Tryptophan/tyrosine permease YPA_0613 IPR001034 HTH DeoR N-terminal domain YPA_0613 IPR014036 DeoR C-terminal sensor domain YPA_0613 IPR018356 Transcription regulator, HTH DeoR-type, conserved site YPA_0613 IPR037171 YPA_0613 YPA_0614 IPR002915 DeoC/FbaB/ lacD aldolase YPA_0614 IPR011343 Deoxyribose-phosphate aldolase YPA_0614 IPR013785 Aldolase-type TIM barrel YPA_0614 IPR028581 Deoxyribose-phosphate aldolase type I YPA_0615 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase YPA_0615 IPR036938 YPA_0615 YPA_0616 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase YPA_0616 IPR036938 YPA_0616 YPA_0617 IPR006037 Regulator of K+ conductance, C-terminal YPA_0617 IPR006512 YidE/YbjL duplication YPA_0617 IPR023017 Transport protein YbjL, putative YPA_0617 IPR036721 YPA_0617 YPA_0618 IPR002109 Glutaredoxin YPA_0618 IPR011767 Glutaredoxin active site YPA_0618 IPR011902 Glutaredoxin, GrxA YPA_0618 IPR014025 Glutaredoxin subgroup YPA_0618 IPR036249 YPA_0618 YPA_0619 IPR010815 Protein of unknown function DUF1418 YPA_0620 IPR019660 Putative sensory transduction regulator YbjN YPA_0621 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein YPA_0621 IPR006059 Bacterial extracellular solute-binding, family 1 YPA_0622 IPR003439 ABC transporter-like YPA_0622 IPR003593 AAA+ ATPase domain YPA_0622 IPR005893 Spermidine/putrescine ABC transporter, ATP-binding subunit YPA_0622 IPR008995 Molybdate/tungstate binding, C-terminal YPA_0622 IPR013611 Transport-associated OB, type 2 YPA_0622 IPR017871 ABC transporter, conserved site YPA_0622 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPA_0623 IPR000515 MetI-like domain YPA_0623 IPR035906 YPA_0623 YPA_0624 IPR000515 MetI-like domain YPA_0624 IPR035906 YPA_0624 YPA_0625 IPR019703 Protein of unknown function DUF2593 YPA_0626 IPR010280 (Uracil-5)-methyltransferase family YPA_0626 IPR011825 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC YPA_0626 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase-like YPA_0626 IPR030390 YPA_0626 YPA_0626 IPR030391 YPA_0626 YPA_0627 IPR001320 Ionotropic glutamate receptor YPA_0627 IPR001638 Extracellular solute-binding protein, family 3 YPA_0627 IPR005768 Lysine-arginine-ornithine-binding periplasmic protein YPA_0627 IPR018313 Extracellular solute-binding protein, family 3, conserved site YPA_0628 IPR001107 Band 7 protein YPA_0628 IPR036013 YPA_0628 YPA_0629 IPR002491 ABC transporter periplasmic binding domain YPA_0630 IPR000522 ABC transporter, permease protein YPA_0630 IPR037294 YPA_0630 YPA_0631 IPR003439 ABC transporter-like YPA_0631 IPR003593 AAA+ ATPase domain YPA_0631 IPR017871 ABC transporter, conserved site YPA_0631 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPA_0632 IPR004298 Nicotianamine synthase YPA_0632 IPR036291 YPA_0632 YPA_0633 IPR016935 Protein of unknown function DUF2338 YPA_0633 IPR036291 YPA_0633 YPA_0634 IPR000620 Drug/metabolite transporter YPA_0636 IPR000515 MetI-like domain YPA_0636 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain, His/Glu/Gln/Arg/opine family YPA_0636 IPR035906 YPA_0636 YPA_0637 IPR000515 MetI-like domain YPA_0637 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain, His/Glu/Gln/Arg/opine family YPA_0637 IPR035906 YPA_0637 YPA_0638 IPR001320 Ionotropic glutamate receptor YPA_0638 IPR001638 Extracellular solute-binding protein, family 3 YPA_0638 IPR005768 Lysine-arginine-ornithine-binding periplasmic protein YPA_0638 IPR018313 Extracellular solute-binding protein, family 3, conserved site YPA_0639 IPR003439 ABC transporter-like YPA_0639 IPR003593 AAA+ ATPase domain YPA_0639 IPR017871 ABC transporter, conserved site YPA_0639 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPA_0639 IPR030679 YPA_0639 YPA_0640 IPR002701 Chorismate mutase YPA_0640 IPR008240 Chorismate mutase, periplasmic YPA_0640 IPR036263 YPA_0640 YPA_0642 IPR024289 Domain of unknown function DUF3828 YPA_0643 IPR001509 NAD-dependent epimerase/dehydratase, N-terminal domain YPA_0643 IPR036291 YPA_0643 YPA_0644 IPR016040 NAD(P)-binding domain YPA_0644 IPR021295 Protein of unknown function DUF2867 YPA_0644 IPR036291 YPA_0644 YPA_0645 IPR001597 Aromatic amino acid beta-eliminating lyase/threonine aldolase YPA_0645 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 YPA_0645 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 YPA_0645 IPR015424 Pyridoxal phosphate-dependent transferase YPA_0645 IPR023603 Threonine aldolase YPA_0647 IPR000399 TPP-binding enzyme, conserved site YPA_0647 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding YPA_0647 IPR012000 Thiamine pyrophosphate enzyme, central domain YPA_0647 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain YPA_0647 IPR029035 DHS-like NAD/FAD-binding domain YPA_0647 IPR029061 Thiamin diphosphate-binding fold YPA_0648 IPR001041 2Fe-2S ferredoxin-type domain YPA_0648 IPR001433 Oxidoreductase FAD/NAD(P)-binding YPA_0648 IPR001834 NADH:cytochrome b5 reductase (CBR) YPA_0648 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site YPA_0648 IPR008333 Oxidoreductase, FAD-binding domain YPA_0648 IPR012675 Beta-grasp domain YPA_0648 IPR017938 Riboflavin synthase-like beta-barrel YPA_0648 IPR036010 YPA_0648 YPA_0648 IPR039261 YPA_0648 YPA_0649 IPR004137 Hydroxylamine reductase/Ni-containing CO dehydrogenase YPA_0649 IPR010048 Hydroxylamine reductase YPA_0649 IPR011254 Prismane-like YPA_0649 IPR016099 Prismane-like, alpha/beta-sandwich YPA_0649 IPR016100 Prismane, alpha-bundle YPA_0650 IPR005642 Protein of unknown function DUF340, prokaryotic membrane YPA_0651 IPR022602 Protein of unknown function DUF2813 YPA_0651 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPA_0652 IPR007488 Protein of unknown function DUF535 YPA_0654 IPR006143 RND efflux pump, membrane fusion protein YPA_0654 IPR032317 YPA_0654 YPA_0655 IPR003439 ABC transporter-like YPA_0655 IPR003593 AAA+ ATPase domain YPA_0655 IPR003838 Permease FtsX-like YPA_0655 IPR017871 ABC transporter, conserved site YPA_0655 IPR025857 MacB-like periplasmic core domain YPA_0655 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPA_0656 IPR002059 Cold-shock protein, DNA-binding YPA_0656 IPR011129 Cold shock protein YPA_0656 IPR012156 Cold shock, CspA YPA_0656 IPR012340 Nucleic acid-binding, OB-fold YPA_0656 IPR012751 CspD, cold shock YPA_0656 IPR019844 Cold-shock conserved site YPA_0657 IPR003769 Adaptor protein ClpS, core YPA_0657 IPR014719 Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like YPA_0657 IPR022935 ATP-dependent Clp protease adaptor protein ClpS YPA_0658 IPR001270 ClpA/B family YPA_0658 IPR003593 AAA+ ATPase domain YPA_0658 IPR003959 ATPase, AAA-type, core YPA_0658 IPR004176 Clp, N-terminal YPA_0658 IPR013461 ATP-dependent Clp protease ATP-binding subunit ClpA YPA_0658 IPR018368 ClpA/B, conserved site 1 YPA_0658 IPR019489 Clp ATPase, C-terminal YPA_0658 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPA_0658 IPR028299 ClpA/B, conserved site 2 YPA_0658 IPR036628 YPA_0658 YPA_0659 IPR002686 Transposase IS200-like YPA_0659 IPR036515 YPA_0659 YPA_0660 IPR004368 Translation initiation factor IF-1 YPA_0660 IPR006196 RNA-binding domain, S1, IF1 type YPA_0660 IPR012340 Nucleic acid-binding, OB-fold YPA_0660 IPR022967 RNA-binding domain, S1 YPA_0661 IPR004616 Leucyl/phenylalanyl-tRNA-protein transferase YPA_0661 IPR016181 Acyl-CoA N-acyltransferase YPA_0662 IPR003439 ABC transporter-like YPA_0662 IPR003593 AAA+ ATPase domain YPA_0662 IPR011527 ABC transporter type 1, transmembrane domain YPA_0662 IPR014223 ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease/ATP-binding protein CydC YPA_0662 IPR017871 ABC transporter, conserved site YPA_0662 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPA_0662 IPR036640 YPA_0662 YPA_0663 IPR003439 ABC transporter-like YPA_0663 IPR003593 AAA+ ATPase domain YPA_0663 IPR011527 ABC transporter type 1, transmembrane domain YPA_0663 IPR014216 ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease/ATP-binding protein CydD YPA_0663 IPR017871 ABC transporter, conserved site YPA_0663 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPA_0663 IPR036640 YPA_0663 YPA_0664 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II YPA_0664 IPR005982 Thioredoxin reductase YPA_0664 IPR008255 Pyridine nucleotide-disulphide oxidoreductase, class-II, active site YPA_0664 IPR023753 Pyridine nucleotide-disulphide oxidoreductase, FAD/NAD(P)-binding domain YPA_0664 IPR036188 YPA_0664 YPA_0665 IPR000485 AsnC-type HTH domain YPA_0665 IPR011008 Dimeric alpha-beta barrel YPA_0665 IPR019885 Transcription regulator HTH, AsnC-type, conserved site YPA_0665 IPR019887 Transcription regulator AsnC-type, C-terminal YPA_0665 IPR019888 Transcription regulator AsnC-type YPA_0665 IPR036388 YPA_0665 YPA_0665 IPR036390 YPA_0665 YPA_0666 IPR002543 FtsK domain YPA_0666 IPR018541 FtsK gamma domain YPA_0666 IPR025199 Domain of unknown function DUF4117 YPA_0666 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPA_0666 IPR036388 YPA_0666 YPA_0666 IPR036390 YPA_0666 YPA_0667 IPR004564 Outer membrane lipoprotein carrier protein LolA-like YPA_0667 IPR018323 Outer membrane lipoprotein carrier protein LolA, Proteobacteria YPA_0667 IPR029046 Lipoprotein localisation LolA/LolB/LppX YPA_0668 IPR003593 AAA+ ATPase domain YPA_0668 IPR003959 ATPase, AAA-type, core YPA_0668 IPR008921 DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal YPA_0668 IPR021886 MgsA AAA+ ATPase C-terminal YPA_0668 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPA_0668 IPR032423 YPA_0668 YPA_0669 IPR002314 Aminoacyl-tRNA synthetase, class II (G/ H/ P/ S), conserved domain YPA_0669 IPR002317 Serine-tRNA ligase, type1 YPA_0669 IPR010978 tRNA-binding arm YPA_0669 IPR015866 Serine-tRNA synthetase, type1, N-terminal YPA_0670 IPR011701 Major facilitator superfamily YPA_0670 IPR036259 YPA_0670 YPA_0671 IPR011701 Major facilitator superfamily YPA_0671 IPR036259 YPA_0671 YPA_0672 IPR001989 Radical-activating enzyme, conserved site YPA_0672 IPR007197 Radical SAM YPA_0672 IPR012838 Pyruvate formate-lyase activating enzyme YPA_0672 IPR013785 Aldolase-type TIM barrel YPA_0673 IPR002654 Glycosyl transferase, family 25 YPA_0674 IPR001150 Glycine radical domain YPA_0674 IPR004184 Pyruvate formate lyase domain YPA_0674 IPR005949 Formate acetyltransferase YPA_0674 IPR019777 Formate C-acetyltransferase glycine radical, conserved site YPA_0675 IPR000292 Formate/nitrite transporter YPA_0675 IPR023271 Aquaporin-like YPA_0675 IPR023999 Formate transporter FocA, putative YPA_0675 IPR024002 Formate/nitrite transporter, conserved site YPA_0676 IPR003776 YcaO-like domain YPA_0677 IPR004550 L-asparaginase, type II YPA_0677 IPR006034 Asparaginase/glutaminase YPA_0677 IPR020827 Asparaginase/glutaminase, active site 1 YPA_0677 IPR027473 L-asparaginase, C-terminal domain YPA_0677 IPR027474 L-asparaginase, N-terminal YPA_0677 IPR027475 Asparaginase/glutaminase, active site 2 YPA_0677 IPR036152 YPA_0677 YPA_0677 IPR037152 YPA_0677 YPA_0678 IPR005594 YadA-like, C-terminal YPA_0678 IPR008126 Outer membrane adhesion, Yersinia YPA_0678 IPR011049 Serralysin-like metalloprotease, C-terminal YPA_0679 IPR005594 YadA-like, C-terminal YPA_0679 IPR011049 Serralysin-like metalloprotease, C-terminal YPA_0680 IPR000192 Aminotransferase class V domain YPA_0680 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 YPA_0680 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 YPA_0680 IPR015424 Pyridoxal phosphate-dependent transferase YPA_0680 IPR020578 Aminotransferase class-V pyridoxal-phosphate binding site YPA_0680 IPR022278 Phosphoserine aminotransferase YPA_0681 IPR001986 Enolpyruvate transferase domain YPA_0681 IPR006264 3-phosphoshikimate 1-carboxyvinyltransferase YPA_0681 IPR013792 RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta YPA_0681 IPR023193 3-phosphoshikimate 1-carboxyvinyltransferase, conserved site YPA_0681 IPR036968 YPA_0681 YPA_0682 IPR003136 Cytidylate kinase YPA_0682 IPR011994 Cytidylate kinase domain YPA_0682 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPA_0683 IPR000110 Ribosomal protein S1 YPA_0683 IPR003029 Ribosomal protein S1, RNA-binding domain YPA_0683 IPR012340 Nucleic acid-binding, OB-fold YPA_0683 IPR022967 RNA-binding domain, S1 YPA_0684 IPR000119 Histone-like bacterial DNA-binding protein YPA_0684 IPR005685 Integration host factor, beta subunit YPA_0684 IPR010992 Integration host factor (IHF)-like DNA-binding domain YPA_0684 IPR020816 Histone-like DNA-binding protein, conserved site YPA_0685 IPR001279 Beta-lactamase-like YPA_0685 IPR004477 ComEC/Rec2-related protein YPA_0685 IPR004797 Competence protein ComEC/Rec2 YPA_0685 IPR025405 Domain of unknown function DUF4131 YPA_0685 IPR036866 YPA_0685 YPA_0686 IPR003439 ABC transporter-like YPA_0686 IPR003593 AAA+ ATPase domain YPA_0686 IPR011527 ABC transporter type 1, transmembrane domain YPA_0686 IPR011917 ABC transporter, lipid A export, MsbA YPA_0686 IPR017871 ABC transporter, conserved site YPA_0686 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPA_0686 IPR036640 YPA_0686 YPA_0687 IPR003758 Tetraacyldisaccharide 4'-kinase YPA_0687 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPA_0688 IPR009770 Domain of unknown function DUF1338 YPA_0689 IPR001270 ClpA/B family YPA_0689 IPR002611 IstB-like ATP-binding protein YPA_0689 IPR003593 AAA+ ATPase domain YPA_0689 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPA_0689 IPR028350 DNA replication protein DnaC/insertion sequence putative ATP-binding protein YPA_0690 IPR001584 Integrase, catalytic core YPA_0690 IPR006120 Resolvase, HTH domain YPA_0690 IPR009057 Homeodomain-like YPA_0690 IPR012337 Ribonuclease H-like domain YPA_0691 IPR009770 Domain of unknown function DUF1338 YPA_0692 IPR002059 Cold-shock protein, DNA-binding YPA_0692 IPR011129 Cold shock protein YPA_0692 IPR012156 Cold shock, CspA YPA_0692 IPR012340 Nucleic acid-binding, OB-fold YPA_0693 IPR005651 Uncharacterised protein family UPF0434/Trm112 YPA_0693 IPR038053 YPA_0693 YPA_0694 IPR003329 Acylneuraminate cytidylyltransferase YPA_0694 IPR004528 3-deoxy-D-manno-octulosonate cytidylyltransferase YPA_0694 IPR029044 Nucleotide-diphospho-sugar transferases YPA_0695 IPR011009 Protein kinase-like domain YPA_0695 IPR016477 Fructosamine/Ketosamine-3-kinase YPA_0696 IPR025714 Methyltransferase domain YPA_0696 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase-like YPA_0696 IPR033664 YPA_0696 YPA_0697 IPR005582 Chromosome partition protein MukF YPA_0697 IPR010916 TonB box, conserved site YPA_0697 IPR033439 YPA_0697 YPA_0697 IPR033440 YPA_0697 YPA_0697 IPR033441 YPA_0697 YPA_0697 IPR036141 YPA_0697 YPA_0697 IPR036388 YPA_0697 YPA_0697 IPR036390 YPA_0697 YPA_0697 IPR038198 YPA_0697 YPA_0698 IPR007385 Prokaryotic chromosome segregation/condensation protein MukE YPA_0699 IPR007406 MukB, N-terminal domain YPA_0699 IPR012090 Chromosome partition protein MukB YPA_0699 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPA_0699 IPR032520 YPA_0699 YPA_0700 IPR002686 Transposase IS200-like YPA_0700 IPR036515 YPA_0700 YPA_0701 IPR002477 Peptidoglycan binding-like YPA_0701 IPR005490 L,D-transpeptidase catalytic domain YPA_0701 IPR036365 YPA_0701 YPA_0701 IPR036366 YPA_0701 YPA_0701 IPR038063 YPA_0701 YPA_0702 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain YPA_0702 IPR010275 Protein of unknown function DUF882 YPA_0703 IPR001279 Beta-lactamase-like YPA_0703 IPR036866 YPA_0703 YPA_0704 IPR000796 Aspartate/other aminotransferase YPA_0704 IPR004838 Aminotransferases, class-I, pyridoxal-phosphate-binding site YPA_0704 IPR004839 Aminotransferase, class I/classII YPA_0704 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 YPA_0704 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 YPA_0704 IPR015424 Pyridoxal phosphate-dependent transferase YPA_0705 IPR001702 Porin, Gram-negative type YPA_0705 IPR013793 Porin, Gram-negative type, conserved site YPA_0705 IPR023614 Porin domain YPA_0706 IPR001702 Porin, Gram-negative type YPA_0706 IPR001897 Porin, gammaproteobacterial YPA_0706 IPR023614 Porin domain YPA_0707 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb YPA_0707 IPR004364 Aminoacyl-tRNA synthetase, class II (D/K/N) YPA_0707 IPR004365 OB-fold nucleic acid binding domain, AA-tRNA synthetase-type YPA_0707 IPR004522 Asparagine-tRNA ligase YPA_0707 IPR012340 Nucleic acid-binding, OB-fold YPA_0708 IPR006406 Nicotinate phosphoribosyltransferase YPA_0708 IPR007229 Nicotinate phosphoribosyltransferase family YPA_0708 IPR036068 YPA_0708 YPA_0709 IPR012779 Peptidase M1, alanyl aminopeptidase YPA_0709 IPR014782 Peptidase M1, membrane alanine aminopeptidase, N-terminal YPA_0709 IPR024601 Peptidase M1, alanyl aminopeptidase, C-terminal YPA_0709 IPR027268 YPA_0709 YPA_0709 IPR035414 YPA_0709 YPA_0709 IPR037144 YPA_0709 YPA_0709 IPR038438 YPA_0709 YPA_0710 IPR001295 Dihydroorotate dehydrogenase, conserved site YPA_0710 IPR005719 Dihydroorotate dehydrogenase, class 2 YPA_0710 IPR005720 Dihydroorotate dehydrogenase domain YPA_0710 IPR012135 Dihydroorotate dehydrogenase, class 1/ 2 YPA_0710 IPR013785 Aldolase-type TIM barrel YPA_0711 IPR009809 Cell division protein ZapC YPA_0712 IPR001041 2Fe-2S ferredoxin-type domain YPA_0712 IPR005302 Molybdenum cofactor sulfurase, C-terminal YPA_0712 IPR005303 MOSC, N-terminal beta barrel YPA_0712 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site YPA_0712 IPR011037 Pyruvate kinase-like, insert domain YPA_0712 IPR012675 Beta-grasp domain YPA_0712 IPR036010 YPA_0712 YPA_0713 IPR000241 Putative RNA methylase domain YPA_0713 IPR002052 DNA methylase, N-6 adenine-specific, conserved site YPA_0713 IPR004114 THUMP YPA_0713 IPR017244 Ribosomal RNA large subunit methyltransferase K/L YPA_0713 IPR019614 S-adenosylmethionine-dependent methyltransferase YPA_0713 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase-like YPA_0714 IPR003439 ABC transporter-like YPA_0714 IPR003593 AAA+ ATPase domain YPA_0714 IPR017871 ABC transporter, conserved site YPA_0714 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPA_0714 IPR032524 YPA_0714 YPA_0714 IPR032781 YPA_0714 YPA_0714 IPR037118 YPA_0714 YPA_0715 IPR005219 Conserved hypothetical protein CHP00155 YPA_0715 IPR007498 Paraquat-inducible protein A YPA_0716 IPR003399 Mammalian cell entry-related YPA_0717 IPR005586 Protein of unknown function DUF330 YPA_0718 IPR002686 Transposase IS200-like YPA_0718 IPR036515 YPA_0718 YPA_0719 IPR014030 Beta-ketoacyl synthase, N-terminal YPA_0719 IPR014031 Beta-ketoacyl synthase, C-terminal YPA_0719 IPR016039 Thiolase-like YPA_0719 IPR018201 Beta-ketoacyl synthase, active site YPA_0719 IPR020841 Polyketide synthase, beta-ketoacyl synthase domain YPA_0720 IPR001270 ClpA/B family YPA_0720 IPR002611 IstB-like ATP-binding protein YPA_0720 IPR003593 AAA+ ATPase domain YPA_0720 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPA_0720 IPR028350 DNA replication protein DnaC/insertion sequence putative ATP-binding protein YPA_0721 IPR001584 Integrase, catalytic core YPA_0721 IPR006120 Resolvase, HTH domain YPA_0721 IPR009057 Homeodomain-like YPA_0721 IPR012337 Ribonuclease H-like domain YPA_0722 IPR014030 Beta-ketoacyl synthase, N-terminal YPA_0722 IPR016039 Thiolase-like YPA_0723 IPR010083 Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA YPA_0723 IPR013114 Beta-hydroxydecanoyl thiol ester dehydrase, FabA/FabZ YPA_0723 IPR029069 HotDog domain YPA_0724 IPR008269 Peptidase S16, Lon C-terminal YPA_0724 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup YPA_0724 IPR020568 Ribosomal protein S5 domain 2-type fold YPA_0725 IPR009390 Macrodomain Ter protein, MatP YPA_0725 IPR013321 Arc-type ribbon-helix-helix YPA_0725 IPR035087 YPA_0725 YPA_0725 IPR035375 YPA_0725 YPA_0725 IPR038339 YPA_0725 YPA_0726 IPR002686 Transposase IS200-like YPA_0726 IPR036515 YPA_0726 YPA_0727 IPR000498 Outer membrane protein, OmpA-like, transmembrane domain YPA_0727 IPR002368 Outer membrane protein, OmpA YPA_0727 IPR006664 Outer membrane protein, bacterial YPA_0727 IPR006665 Outer membrane protein, OmpA/MotB, C-terminal YPA_0727 IPR006690 Outer membrane protein, OmpA-like, conserved site YPA_0727 IPR011250 Outer membrane protein/outer membrane enzyme PagP , beta-barrel YPA_0727 IPR036737 YPA_0727 YPA_0728 IPR004596 Cell division suppressor protein, SulA YPA_0728 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPA_0729 IPR007076 TfoX, N-terminal YPA_0729 IPR007077 TfoX, C-terminal YPA_0729 IPR026256 Transcriptional regulator, TfoX/Sxy-type YPA_0730 IPR010019 Integral membrane protein, YccS YPA_0730 IPR010020 Integral membrane protein, YccS/YhfK YPA_0730 IPR032692 YPA_0730 YPA_0731 IPR005185 Protein of unknown function DUF307 YPA_0731 IPR031308 YPA_0731 YPA_0732 IPR014017 DNA helicase, UvrD-like, C-terminal YPA_0732 IPR022161 DNA helicase IV, N-terminal domain YPA_0732 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPA_0732 IPR034739 YPA_0732 YPA_0733 IPR004363 Methylglyoxal synthase YPA_0733 IPR011607 Methylglyoxal synthase-like domain YPA_0733 IPR018148 Methylglyoxal synthase, active site YPA_0733 IPR036914 YPA_0733 YPA_0734 IPR018635 Uncharacterised protein family UPF0319 YPA_0735 IPR003781 CoA-binding YPA_0735 IPR036291 YPA_0735 YPA_0736 IPR011722 Hemimethylated DNA-binding domain YPA_0736 IPR022866 Heat shock protein HspQ YPA_0736 IPR036623 YPA_0736 YPA_0737 IPR002478 PUA domain YPA_0737 IPR015947 PUA-like domain YPA_0737 IPR019614 S-adenosylmethionine-dependent methyltransferase YPA_0737 IPR023542 rRNA large subunit methyltransferase I YPA_0737 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase-like YPA_0737 IPR036974 YPA_0737 YPA_0738 IPR001792 Acylphosphatase-like domain YPA_0738 IPR017968 Acylphosphatase, conserved site YPA_0738 IPR020456 Acylphosphatase YPA_0738 IPR028627 Acylphosphatase, bacteria YPA_0738 IPR036046 YPA_0738 YPA_0739 IPR007453 Sulphur transfer protein DsrC/TusE YPA_0739 IPR025526 DsrC-like domain YPA_0740 IPR012337 Ribonuclease H-like domain YPA_0740 IPR032874 YPA_0740 YPA_0744 IPR006093 Oxygen oxidoreductase covalent FAD-binding site YPA_0744 IPR006094 FAD linked oxidase, N-terminal YPA_0744 IPR016167 FAD-binding, type 2, subdomain 1 YPA_0744 IPR016169 CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2 YPA_0744 IPR016181 Acyl-CoA N-acyltransferase YPA_0744 IPR036318 YPA_0744 YPA_0744 IPR038740 YPA_0744 YPA_0745 IPR002347 Glucose/ribitol dehydrogenase YPA_0745 IPR020904 Short-chain dehydrogenase/reductase, conserved site YPA_0745 IPR036291 YPA_0745 YPA_0747 IPR013114 Beta-hydroxydecanoyl thiol ester dehydrase, FabA/FabZ YPA_0747 IPR029069 HotDog domain YPA_0748 IPR014030 Beta-ketoacyl synthase, N-terminal YPA_0748 IPR014031 Beta-ketoacyl synthase, C-terminal YPA_0748 IPR016039 Thiolase-like YPA_0748 IPR020841 Polyketide synthase, beta-ketoacyl synthase domain YPA_0749 IPR002347 Glucose/ribitol dehydrogenase YPA_0749 IPR020904 Short-chain dehydrogenase/reductase, conserved site YPA_0749 IPR036291 YPA_0749 YPA_0750 IPR013528 Hydroxymethylglutaryl-coenzyme A synthase, N-terminal YPA_0750 IPR013746 Hydroxymethylglutaryl-coenzyme A synthase C-terminal domain YPA_0750 IPR016039 Thiolase-like YPA_0751 IPR001753 Crotonase superfamily YPA_0751 IPR029045 ClpP/crotonase-like domain YPA_0752 IPR001753 Crotonase superfamily YPA_0752 IPR018376 Enoyl-CoA hydratase/isomerase, conserved site YPA_0752 IPR029045 ClpP/crotonase-like domain YPA_0753 IPR002347 Glucose/ribitol dehydrogenase YPA_0753 IPR036291 YPA_0753 YPA_0754 IPR024311 Lipocalin-like domain YPA_0755 IPR009081 Acyl carrier protein-like YPA_0755 IPR036736 YPA_0755 YPA_0756 IPR001227 Acyl transferase domain YPA_0756 IPR014043 Acyl transferase YPA_0756 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase YPA_0756 IPR016036 Malonyl-CoA ACP transacylase, ACP-binding YPA_0756 IPR020801 Polyketide synthase, acyl transferase domain YPA_0756 IPR024925 Malonyl CoA-acyl carrier protein transacylase YPA_0757 IPR001584 Integrase, catalytic core YPA_0757 IPR006120 Resolvase, HTH domain YPA_0757 IPR009057 Homeodomain-like YPA_0757 IPR012337 Ribonuclease H-like domain YPA_0758 IPR001270 ClpA/B family YPA_0758 IPR002611 IstB-like ATP-binding protein YPA_0758 IPR003593 AAA+ ATPase domain YPA_0758 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPA_0758 IPR028350 DNA replication protein DnaC/insertion sequence putative ATP-binding protein YPA_0759 IPR008312 Uncharacterised conserved protein UCP028301 YPA_0760 IPR010269 Protein of unknown function DUF877 YPA_0761 IPR010263 Protein of unknown function DUF876 YPA_0762 IPR017732 Type IV / VI secretion system, DotU YPA_0762 IPR038522 YPA_0762 YPA_0763 IPR006665 Outer membrane protein, OmpA/MotB, C-terminal YPA_0763 IPR036737 YPA_0763 YPA_0764 IPR008514 Type VI secretion system effector, Hcp YPA_0764 IPR036624 YPA_0764 YPA_0765 IPR001270 ClpA/B family YPA_0765 IPR003593 AAA+ ATPase domain YPA_0765 IPR003959 ATPase, AAA-type, core YPA_0765 IPR017729 Type VI secretion system, ATPase ClpV1 YPA_0765 IPR018368 ClpA/B, conserved site 1 YPA_0765 IPR019489 Clp ATPase, C-terminal YPA_0765 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPA_0765 IPR036628 YPA_0765 YPA_0766 IPR006533 Type VI secretion system, RhsGE-associated Vgr protein YPA_0766 IPR017847 Type VI secretion system, RhsGE-associated Vgr family subset YPA_0766 IPR018769 Domain of unknown function DUF2345, Vgr C-terminal YPA_0766 IPR028244 Putative type VI secretion system, Rhs element associated Vgr domain YPA_0766 IPR037026 YPA_0766 YPA_0767 IPR011055 Duplicated hybrid motif YPA_0767 IPR016047 Peptidase M23 YPA_0767 IPR023346 Lysozyme-like domain YPA_0769 IPR018769 Domain of unknown function DUF2345, Vgr C-terminal YPA_0770 IPR011055 Duplicated hybrid motif YPA_0770 IPR016047 Peptidase M23 YPA_0770 IPR023346 Lysozyme-like domain YPA_0776 IPR009612 ImcF-related YPA_0776 IPR010623 Domain of unknown function DUF1215 YPA_0777 IPR010657 ImpA, N-terminal YPA_0777 IPR017739 Type VI secretion system-associated, VCA0119 YPA_0778 IPR017739 Type VI secretion system-associated, VCA0119 YPA_0779 IPR008727 PAAR motif YPA_0779 IPR028946 Putative toxin 60 YPA_0781 IPR010272 Type VI secretion system, VCA0110 YPA_0782 IPR010732 Protein of unknown function DUF1305 YPA_0783 IPR017734 Type VI secretion system, lipoprotein SciN YPA_0783 IPR038706 YPA_0783 YPA_0784 IPR007048 GpW/Gp25/anti-adapter protein IraD YPA_0784 IPR017737 Type VI secretion system, lysozyme-related protein YPA_0785 IPR010657 ImpA, N-terminal YPA_0785 IPR021069 ImpA, C-terminal YPA_0786 IPR031829 YPA_0786 YPA_0786 IPR038334 YPA_0786 YPA_0787 IPR003439 ABC transporter-like YPA_0787 IPR003593 AAA+ ATPase domain YPA_0787 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPA_0787 IPR032781 YPA_0787 YPA_0788 IPR031829 YPA_0788 YPA_0789 IPR001207 Transposase, mutator type YPA_0790 IPR000594 UBA/THIF-type NAD/FAD binding fold YPA_0790 IPR012730 Molybdopterin synthase sulfurylase MoeB YPA_0790 IPR035985 YPA_0790 YPA_0791 IPR001453 Molybdopterin binding domain YPA_0791 IPR005110 MoeA, N-terminal and linker domain YPA_0791 IPR005111 MoeA, C-terminal, domain IV YPA_0791 IPR008284 Molybdenum cofactor biosynthesis, conserved site YPA_0791 IPR036135 YPA_0791 YPA_0791 IPR036425 YPA_0791 YPA_0791 IPR036688 YPA_0791 YPA_0792 IPR007197 Radical SAM YPA_0792 IPR013785 Aldolase-type TIM barrel YPA_0792 IPR023885 4Fe4S-binding SPASM domain YPA_0793 IPR003439 ABC transporter-like YPA_0793 IPR003593 AAA+ ATPase domain YPA_0793 IPR017871 ABC transporter, conserved site YPA_0793 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPA_0796 IPR000801 Putative esterase YPA_0796 IPR014186 S-formylglutathione hydrolase YPA_0796 IPR029058 Alpha/Beta hydrolase fold YPA_0797 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site YPA_0797 IPR011032 GroES (chaperonin 10)-like YPA_0797 IPR013149 Alcohol dehydrogenase, C-terminal YPA_0797 IPR013154 Alcohol dehydrogenase GroES-like YPA_0797 IPR014183 Alcohol dehydrogenase class III/S-(hydroxymethyl)glutathione dehydrogenase YPA_0797 IPR020843 Polyketide synthase, enoylreductase YPA_0797 IPR036291 YPA_0797 YPA_0798 IPR000847 Transcription regulator HTH, LysR YPA_0798 IPR005119 LysR, substrate-binding YPA_0798 IPR036388 YPA_0798 YPA_0798 IPR036390 YPA_0798 YPA_0799 IPR010645 Domain of unknown function DUF1228 YPA_0799 IPR036259 YPA_0799 YPA_0800 IPR001474 GTP cyclohydrolase I YPA_0800 IPR018234 GTP cyclohydrolase I, conserved site YPA_0800 IPR020602 GTP cyclohydrolase I domain YPA_0801 IPR007349 Domain of unknown function DUF418 YPA_0802 IPR025997 Periplasmic binding protein domain YPA_0802 IPR028082 Periplasmic binding protein-like I YPA_0803 IPR003439 ABC transporter-like YPA_0803 IPR003593 AAA+ ATPase domain YPA_0803 IPR017871 ABC transporter, conserved site YPA_0803 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPA_0804 IPR001851 ABC transporter, permease YPA_0805 IPR003848 Domain of unknown function DUF218 YPA_0805 IPR023604 Uncharacterised protein family SanA YPA_0806 IPR001891 Malic oxidoreductase YPA_0806 IPR012301 Malic enzyme, N-terminal domain YPA_0806 IPR012302 Malic enzyme, NAD-binding YPA_0806 IPR015884 Malic enzyme, conserved site YPA_0806 IPR023667 NAD-dependent malic enzyme, proteobacteria YPA_0806 IPR036291 YPA_0806 YPA_0806 IPR037062 YPA_0806 YPA_0807 IPR002125 CMP/dCMP deaminase, zinc-binding YPA_0807 IPR006263 Cytidine deaminase, homodimeric YPA_0807 IPR013171 Cytidine/deoxycytidylate deaminase, zinc-binding domain YPA_0807 IPR016192 APOBEC/CMP deaminase, zinc-binding YPA_0807 IPR016193 Cytidine deaminase-like YPA_0807 IPR020797 Cytidine deaminase, bacteria YPA_0808 IPR005261 Conserved hypothetical protein CHP00659 YPA_0808 IPR007300 CidB/LrgB family YPA_0809 IPR005538 LrgA/CidA family YPA_0809 IPR022957 Uncharacterised protein family UPF0299 YPA_0810 IPR011701 Major facilitator superfamily YPA_0810 IPR036259 YPA_0810 YPA_0811 IPR011048 Cytochrome cd1-nitrite reductase-like, haem d1 domain YPA_0811 IPR013211 LVIVD YPA_0812 IPR025997 Periplasmic binding protein domain YPA_0812 IPR028082 Periplasmic binding protein-like I YPA_0815 IPR002686 Transposase IS200-like YPA_0815 IPR036515 YPA_0815 YPA_0816 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site YPA_0816 IPR002547 tRNA-binding domain YPA_0816 IPR004495 Methionyl-tRNA synthetase, class Ia, beta subunit, C-terminal YPA_0816 IPR009080 Aminoacyl-tRNA synthetase, class 1a, anticodon-binding YPA_0816 IPR012340 Nucleic acid-binding, OB-fold YPA_0816 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold YPA_0816 IPR014758 Methionyl-tRNA synthetase YPA_0816 IPR015413 Methionyl/Leucyl tRNA synthetase YPA_0816 IPR023458 Methionine-tRNA ligase, type 1 YPA_0816 IPR029038 Methionyl-tRNA synthetase, Zn-domain YPA_0816 IPR033911 YPA_0816 YPA_0817 IPR000808 Mrp, conserved site YPA_0817 IPR019591 Mrp/NBP35 ATP-binding protein YPA_0817 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPA_0817 IPR033756 YPA_0817 YPA_0817 IPR034904 YPA_0817 YPA_0818 IPR000764 Uridine kinase like YPA_0818 IPR006083 Phosphoribulokinase/uridine kinase YPA_0818 IPR026008 Uridine kinase YPA_0818 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPA_0819 IPR011962 Deoxycytidine triphosphate deaminase YPA_0819 IPR029054 dUTPase-like YPA_0819 IPR036157 YPA_0819 YPA_0820 IPR007844 AsmA YPA_0820 IPR032712 YPA_0820 YPA_0821 IPR000644 CBS domain YPA_0821 IPR005170 Transporter-associated domain YPA_0821 IPR005496 Integral membrane protein TerC YPA_0821 IPR016169 CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2 YPA_0821 IPR036318 YPA_0821 YPA_0822 IPR008090 Ferric iron reductase YPA_0822 IPR022770 Ferric iron reductase FhuF domain YPA_0822 IPR024726 Ferric iron reductase, C-terminal YPA_0823 IPR002129 Pyridoxal phosphate-dependent decarboxylase YPA_0823 IPR010977 Aromatic-L-amino-acid decarboxylase YPA_0823 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 YPA_0823 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 YPA_0823 IPR015424 Pyridoxal phosphate-dependent transferase YPA_0824 IPR025700 L-lysine 6-monooxygenase/L-ornithine 5-monooxygenase YPA_0824 IPR036188 YPA_0824 YPA_0825 IPR016181 Acyl-CoA N-acyltransferase YPA_0825 IPR019432 Siderophore biosynthesis protein, conserved domain YPA_0826 IPR007310 Aerobactin siderophore biosynthesis, IucA/IucC, N-terminal YPA_0826 IPR022770 Ferric iron reductase FhuF domain YPA_0827 IPR003439 ABC transporter-like YPA_0827 IPR003593 AAA+ ATPase domain YPA_0827 IPR017871 ABC transporter, conserved site YPA_0827 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPA_0828 IPR000522 ABC transporter, permease protein YPA_0828 IPR037294 YPA_0828 YPA_0829 IPR000522 ABC transporter, permease protein YPA_0829 IPR037294 YPA_0829 YPA_0830 IPR002491 ABC transporter periplasmic binding domain YPA_0831 IPR000531 TonB-dependent receptor, beta-barrel YPA_0831 IPR010105 TonB-dependent siderophore receptor YPA_0831 IPR010917 TonB-dependent receptor, conserved site YPA_0831 IPR012910 TonB-dependent receptor, plug YPA_0831 IPR036942 YPA_0831 YPA_0831 IPR037066 YPA_0831 YPA_0832 IPR007310 Aerobactin siderophore biosynthesis, IucA/IucC, N-terminal YPA_0832 IPR022770 Ferric iron reductase FhuF domain YPA_0833 IPR007310 Aerobactin siderophore biosynthesis, IucA/IucC, N-terminal YPA_0834 IPR005771 UTP--glucose-1-phosphate uridylyltransferase, bacterial/archaeal-type YPA_0834 IPR005835 Nucleotidyl transferase YPA_0834 IPR029044 Nucleotide-diphospho-sugar transferases YPA_0835 IPR005771 UTP--glucose-1-phosphate uridylyltransferase, bacterial/archaeal-type YPA_0835 IPR005835 Nucleotidyl transferase YPA_0835 IPR029044 Nucleotide-diphospho-sugar transferases YPA_0836 IPR006113 6-phosphogluconate dehydrogenase, decarboxylating YPA_0836 IPR006114 6-phosphogluconate dehydrogenase, C-terminal YPA_0836 IPR006115 6-phosphogluconate dehydrogenase, NADP-binding YPA_0836 IPR006183 YPA_0836 YPA_0836 IPR006184 6-phosphogluconate-binding site YPA_0836 IPR008927 6-phosphogluconate dehydrogenase, C-terminal-like YPA_0836 IPR013328 Dehydrogenase, multihelical YPA_0836 IPR036291 YPA_0836 YPA_0837 IPR002496 Phosphoribosyl-AMP cyclohydrolase domain YPA_0837 IPR008179 Phosphoribosyl-ATP pyrophosphohydrolase YPA_0837 IPR021130 Phosphoribosyl-ATP pyrophosphohydrolase-like YPA_0837 IPR023019 Histidine biosynthesis bifunctional protein HisIE YPA_0837 IPR038019 YPA_0837 YPA_0838 IPR004651 Histidine biosynthesis, HisF YPA_0838 IPR006062 Histidine biosynthesis YPA_0838 IPR011060 Ribulose-phosphate binding barrel YPA_0838 IPR013785 Aldolase-type TIM barrel YPA_0839 IPR006062 Histidine biosynthesis YPA_0839 IPR006063 Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase HisA YPA_0839 IPR011060 Ribulose-phosphate binding barrel YPA_0839 IPR013785 Aldolase-type TIM barrel YPA_0839 IPR023016 Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase YPA_0840 IPR010139 Imidazole glycerol phosphate synthase, subunit H YPA_0840 IPR017926 Glutamine amidotransferase YPA_0840 IPR029062 Class I glutamine amidotransferase-like YPA_0842 IPR000807 Imidazoleglycerol-phosphate dehydratase YPA_0842 IPR005954 Histidinol-phosphatase YPA_0842 IPR006543 Histidinol-phosphate phosphatase YPA_0842 IPR006549 HAD-superfamily hydrolase,subfamily IIIA YPA_0842 IPR020565 Imidazoleglycerol-phosphate dehydratase, conserved site YPA_0842 IPR020566 Histidine biosynthesis bifunctional protein HisB YPA_0842 IPR020568 Ribosomal protein S5 domain 2-type fold YPA_0842 IPR023214 HAD-like domain YPA_0842 IPR036412 YPA_0842 YPA_0842 IPR038494 YPA_0842 YPA_0843 IPR001917 Aminotransferase, class-II, pyridoxal-phosphate binding site YPA_0843 IPR004839 Aminotransferase, class I/classII YPA_0843 IPR005861 Histidinol-phosphate aminotransferase family YPA_0843 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 YPA_0843 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 YPA_0843 IPR015424 Pyridoxal phosphate-dependent transferase YPA_0844 IPR001692 Histidinol dehydrogenase, conserved site YPA_0844 IPR012131 Histidinol dehydrogenase YPA_0844 IPR016161 Aldehyde/histidinol dehydrogenase YPA_0844 IPR022695 Histidinol dehydrogenase, monofunctional YPA_0845 IPR011322 Nitrogen regulatory PII-like, alpha/beta YPA_0845 IPR013115 Histidine biosynthesis HisG, C-terminal YPA_0845 IPR013820 ATP phosphoribosyltransferase, catalytic domain YPA_0845 IPR015867 Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal YPA_0845 IPR018198 ATP phosphoribosyltransferase, conserved site YPA_0845 IPR020621 ATP phosphoribosyltransferase HisG, long form YPA_0846 IPR001509 NAD-dependent epimerase/dehydratase, N-terminal domain YPA_0846 IPR036291 YPA_0846 YPA_0847 IPR032032 YPA_0847 YPA_0847 IPR038314 YPA_0847 YPA_0848 IPR001851 ABC transporter, permease YPA_0849 IPR003439 ABC transporter-like YPA_0849 IPR003593 AAA+ ATPase domain YPA_0849 IPR017871 ABC transporter, conserved site YPA_0849 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPA_0850 IPR003439 ABC transporter-like YPA_0850 IPR003593 AAA+ ATPase domain YPA_0850 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPA_0851 IPR001670 Alcohol dehydrogenase, iron-type YPA_0851 IPR016205 Glycerol dehydrogenase YPA_0851 IPR018211 Alcohol dehydrogenase, iron-type, conserved site YPA_0852 IPR002293 Amino acid/polyamine transporter I YPA_0853 IPR012337 Ribonuclease H-like domain YPA_0853 IPR013520 Exonuclease, RNase T/DNA polymerase III YPA_0853 IPR013620 Exonuclease C-terminal YPA_0853 IPR023607 Exodeoxyribonuclease I YPA_0853 IPR036397 YPA_0853 YPA_0853 IPR038649 YPA_0853 YPA_0854 IPR013120 Male sterility, NAD-binding YPA_0854 IPR036291 YPA_0854 YPA_0855 IPR007458 Protein of unknown function DUF496 YPA_0856 IPR001207 Transposase, mutator type YPA_0857 IPR003344 Bacterial Ig-like, group 1 YPA_0857 IPR003535 Intimin/invasin bacterial adhesion mediator protein YPA_0857 IPR008964 Invasin/intimin cell-adhesion YPA_0857 IPR013783 Immunoglobulin-like fold YPA_0857 IPR015217 Invasin, domain 3 YPA_0857 IPR024519 Domain of unknown function DUF3442, intimin/invasin YPA_0857 IPR038177 YPA_0857 YPA_0859 IPR011701 Major facilitator superfamily YPA_0859 IPR036259 YPA_0859 YPA_0860 IPR007263 Protein of unknown function DUF393 YPA_0861 IPR002347 Glucose/ribitol dehydrogenase YPA_0861 IPR020904 Short-chain dehydrogenase/reductase, conserved site YPA_0861 IPR036291 YPA_0861 YPA_0862 IPR011234 Fumarylacetoacetase, C-terminal-related YPA_0862 IPR036663 YPA_0862 YPA_0863 IPR013341 Mandelate racemase/muconate lactonizing enzyme, N-terminal domain YPA_0863 IPR013342 Mandelate racemase/muconate lactonizing enzyme, C-terminal YPA_0863 IPR018110 Mandelate racemase/muconate lactonizing enzyme, conserved site YPA_0863 IPR029017 Enolase N-terminal domain-like YPA_0863 IPR029065 Enolase C-terminal domain-like YPA_0863 IPR036849 YPA_0863 YPA_0864 IPR000262 FMN-dependent dehydrogenase YPA_0864 IPR008259 FMN-dependent alpha-hydroxy acid dehydrogenase, active site YPA_0864 IPR012133 Alpha-hydroxy acid dehydrogenase, FMN-dependent YPA_0864 IPR013785 Aldolase-type TIM barrel YPA_0864 IPR020920 L-lactate dehydrogenase, bacterial YPA_0865 IPR001518 Argininosuccinate synthase YPA_0865 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold YPA_0865 IPR018223 Argininosuccinate synthase, conserved site YPA_0865 IPR024073 Argininosuccinate synthetase mutimerisation domain, C-terminal tail YPA_0865 IPR024074 Argininosuccinate synthetase, catalytic/multimerisation domain body YPA_0866 IPR001518 Argininosuccinate synthase YPA_0866 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold YPA_0866 IPR018223 Argininosuccinate synthase, conserved site YPA_0866 IPR024074 Argininosuccinate synthetase, catalytic/multimerisation domain body YPA_0867 IPR002528 Multi antimicrobial extrusion protein YPA_0868 IPR005829 Sugar transporter, conserved site YPA_0868 IPR011701 Major facilitator superfamily YPA_0868 IPR036259 YPA_0868 YPA_0869 IPR002509 Polysaccharide deacetylase YPA_0869 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel YPA_0871 IPR018636 Protein of unknown function DUF2058 YPA_0872 IPR000792 Transcription regulator LuxR, C-terminal YPA_0872 IPR001789 Signal transduction response regulator, receiver domain YPA_0872 IPR011006 CheY-like superfamily YPA_0872 IPR016032 Signal transduction response regulator, C-terminal effector YPA_0873 IPR004681 TRAP transporter permease protein YPA_0873 IPR010656 TRAP C4-dicarboxylate transport system permease DctM subunit YPA_0874 IPR007387 Tripartite ATP-independent periplasmic transporter, DctQ component YPA_0875 IPR004682 TRAP dicarboxylate transporter YPA_0875 IPR018389 Bacterial extracellular solute-binding protein, family 7 YPA_0875 IPR038404 YPA_0875 YPA_0876 IPR003542 Enterobactin synthetase-like, component D YPA_0876 IPR008278 4'-phosphopantetheinyl transferase superfamily YPA_0876 IPR037143 YPA_0876 YPA_0878 IPR000111 Glycoside hydrolase, clan GH-D YPA_0878 IPR002252 Glycoside hydrolase, family 36 YPA_0878 IPR013785 Aldolase-type TIM barrel YPA_0878 IPR017853 Glycoside hydrolase, superfamily YPA_0878 IPR031704 YPA_0878 YPA_0878 IPR038417 YPA_0878 YPA_0879 IPR000576 LacY/RafB permease family YPA_0879 IPR036259 YPA_0879 YPA_0880 IPR001207 Transposase, mutator type YPA_0881 IPR002525 Transposase, IS111A/IS1328/IS1533, N-terminal YPA_0882 IPR000629 RNA helicase, ATP-dependent, DEAD-box, conserved site YPA_0882 IPR001650 Helicase, C-terminal YPA_0882 IPR011545 DEAD/DEAH box helicase domain YPA_0882 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPA_0883 IPR002686 Transposase IS200-like YPA_0883 IPR036515 YPA_0883 YPA_0885 IPR001269 tRNA-dihydrouridine synthase YPA_0885 IPR013785 Aldolase-type TIM barrel YPA_0885 IPR018517 tRNA-dihydrouridine synthase, conserved site YPA_0885 IPR032886 YPA_0885 YPA_0887 IPR001967 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A, N-terminal YPA_0887 IPR012338 Beta-lactamase/transpeptidase-like YPA_0887 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A YPA_0888 IPR006094 FAD linked oxidase, N-terminal YPA_0888 IPR012256 D-lactate dehydrogenase YPA_0888 IPR015409 D-lactate dehydrogenase, membrane binding, C-terminal YPA_0888 IPR016164 FAD-linked oxidase-like, C-terminal YPA_0888 IPR016167 FAD-binding, type 2, subdomain 1 YPA_0888 IPR016169 CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2 YPA_0888 IPR016172 D-lactate dehydrogenase, C-terminal subdomain 1 YPA_0888 IPR016173 D-lactate dehydrogenase, C-terminal subdomain 2 YPA_0888 IPR036318 YPA_0888 YPA_0889 IPR008173 Adenylyl cyclase CyaB YPA_0889 IPR023577 CYTH-like domain YPA_0889 IPR033469 YPA_0889 YPA_0890 IPR002711 HNH endonuclease YPA_0890 IPR003615 HNH nuclease YPA_0892 IPR020941 Suppressor of fused-like domain YPA_0893 IPR007341 Transglycosylase-associated protein YPA_0894 IPR003439 ABC transporter-like YPA_0894 IPR003593 AAA+ ATPase domain YPA_0894 IPR012693 ABC transporter, phosphonate import, PhnC YPA_0894 IPR017871 ABC transporter, conserved site YPA_0894 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPA_0895 IPR005770 Phosphate/phosphite/phosphonate ABC transporter, periplasmic protein YPA_0895 IPR017797 Phosphonate ABC transporter, periplasmic substrate-binding protein YPA_0896 IPR000515 MetI-like domain YPA_0896 IPR005769 ABC transporter, permease PhnE/PtxC YPA_0896 IPR035906 YPA_0896 YPA_0897 IPR000515 MetI-like domain YPA_0897 IPR005769 ABC transporter, permease PhnE/PtxC YPA_0897 IPR035906 YPA_0897 YPA_0898 IPR009921 Domain of unknown function DUF1456 YPA_0899 IPR000709 Leu/Ile/Val-binding protein YPA_0899 IPR017777 ABC transporter, urea, substrate-binding, UrtA YPA_0899 IPR028082 Periplasmic binding protein-like I YPA_0900 IPR001851 ABC transporter, permease YPA_0900 IPR011989 Armadillo-like helical YPA_0900 IPR016024 Armadillo-type fold YPA_0900 IPR017779 ABC transporter, urea, permease protein, UrtB YPA_0901 IPR001851 ABC transporter, permease YPA_0901 IPR017778 ABC transporter, urea, permease protein, UrtC YPA_0902 IPR003439 ABC transporter-like YPA_0902 IPR017781 ABC transporter, urea, ATP-binding protein, UrtD YPA_0902 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPA_0902 IPR032823 YPA_0902 YPA_0903 IPR003439 ABC transporter-like YPA_0903 IPR003593 AAA+ ATPase domain YPA_0903 IPR017780 ABC transporter, urea, ATP-binding protein, UrtE YPA_0903 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPA_0904 IPR005123 Oxoglutarate/iron-dependent dioxygenase YPA_0904 IPR016946 Uncharacterised conserved protein UCP030125 YPA_0905 IPR002129 Pyridoxal phosphate-dependent decarboxylase YPA_0905 IPR010977 Aromatic-L-amino-acid decarboxylase YPA_0905 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 YPA_0905 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 YPA_0905 IPR015424 Pyridoxal phosphate-dependent transferase YPA_0906 IPR001307 Thiosulphate sulfurtransferase, conserved site YPA_0906 IPR001763 Rhodanese-like domain YPA_0906 IPR036873 YPA_0906 YPA_0907 IPR007210 ABC-type glycine betaine transport system, substrate-binding domain YPA_0908 IPR007210 ABC-type glycine betaine transport system, substrate-binding domain YPA_0909 IPR000515 MetI-like domain YPA_0909 IPR035906 YPA_0909 YPA_0910 IPR003439 ABC transporter-like YPA_0910 IPR003593 AAA+ ATPase domain YPA_0910 IPR017871 ABC transporter, conserved site YPA_0910 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPA_0911 IPR000515 MetI-like domain YPA_0911 IPR035906 YPA_0911 YPA_0912 IPR002293 Amino acid/polyamine transporter I YPA_0913 IPR000310 Orn/Lys/Arg decarboxylase, major domain YPA_0913 IPR005308 Orn/Lys/Arg decarboxylase, N-terminal YPA_0913 IPR008286 Orn/Lys/Arg decarboxylase, C-terminal YPA_0913 IPR011193 Ornithine/lysine/arginine decarboxylase YPA_0913 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 YPA_0913 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 YPA_0913 IPR015424 Pyridoxal phosphate-dependent transferase YPA_0913 IPR036633 YPA_0913 YPA_0915 IPR000620 Drug/metabolite transporter YPA_0917 IPR001584 Integrase, catalytic core YPA_0917 IPR006120 Resolvase, HTH domain YPA_0917 IPR009057 Homeodomain-like YPA_0917 IPR012337 Ribonuclease H-like domain YPA_0918 IPR001270 ClpA/B family YPA_0918 IPR002611 IstB-like ATP-binding protein YPA_0918 IPR003593 AAA+ ATPase domain YPA_0918 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPA_0918 IPR028350 DNA replication protein DnaC/insertion sequence putative ATP-binding protein YPA_0919 IPR001702 Porin, Gram-negative type YPA_0919 IPR001897 Porin, gammaproteobacterial YPA_0919 IPR013793 Porin, Gram-negative type, conserved site YPA_0919 IPR023614 Porin domain YPA_0920 IPR006554 Helicase-like, DEXD box c2 type YPA_0920 IPR006555 ATP-dependent helicase, C-terminal YPA_0920 IPR010614 DEAD2 YPA_0920 IPR014001 Helicase, superfamily 1/2, ATP-binding domain YPA_0920 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPA_0920 IPR039000 YPA_0920 YPA_0921 IPR010582 Catalase immune-responsive domain YPA_0921 IPR011614 Catalase core domain YPA_0921 IPR018028 Catalase, mono-functional, haem-containing YPA_0921 IPR020835 Catalase-like domain YPA_0921 IPR024708 Catalase active site YPA_0921 IPR024711 Catalase, mono-functional, haem-containing, clades 1 and 3 YPA_0921 IPR037060 YPA_0921 YPA_0922 IPR009998 YfaZ YPA_0922 IPR011250 Outer membrane protein/outer membrane enzyme PagP , beta-barrel YPA_0923 IPR013059 Tryptophan/tyrosine transporter YPA_0923 IPR013061 Tryptophan/tryrosine permease, conserved site YPA_0923 IPR018227 Tryptophan/tyrosine permease YPA_0924 IPR001453 Molybdopterin binding domain YPA_0924 IPR008135 Competence-induced protein CinA YPA_0924 IPR036425 YPA_0924 YPA_0925 IPR005658 Proteinase inhibitor I11, ecotin YPA_0925 IPR023084 Proteinase inhibitor I11, ecotin, gammaproteobacteria YPA_0925 IPR036198 YPA_0925 YPA_0926 IPR001041 2Fe-2S ferredoxin-type domain YPA_0926 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site YPA_0926 IPR012675 Beta-grasp domain YPA_0926 IPR036010 YPA_0926 YPA_0927 IPR000358 Ribonucleotide reductase small subunit YPA_0927 IPR009078 Ferritin-like superfamily YPA_0927 IPR012348 Ribonucleotide reductase-related YPA_0927 IPR030475 YPA_0927 YPA_0928 IPR000788 Ribonucleotide reductase large subunit, C-terminal YPA_0928 IPR005144 ATP-cone YPA_0928 IPR008926 Ribonucleotide reductase R1 subunit, N-terminal YPA_0928 IPR013346 Ribonucleotide reductase, class I , alpha subunit YPA_0928 IPR013509 Ribonucleotide reductase large subunit, N-terminal YPA_0929 IPR010233 Ubiquinone biosynthesis O-methyltransferase YPA_0929 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase-like YPA_0930 IPR002205 DNA topoisomerase, type IIA, subunit A/C-terminal YPA_0930 IPR005743 DNA gyrase, subunit A YPA_0930 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal beta-pinwheel YPA_0930 IPR013757 Type IIA DNA topoisomerase subunit A, alpha-helical domain YPA_0930 IPR013758 DNA topoisomerase, type IIA, subunit A/ C-terminal, alpha-beta YPA_0930 IPR013760 DNA topoisomerase, type IIA-like domain YPA_0930 IPR035516 YPA_0930 YPA_0931 IPR001789 Signal transduction response regulator, receiver domain YPA_0931 IPR003594 Histidine kinase-like ATPase, C-terminal domain YPA_0931 IPR003661 Signal transduction histidine kinase EnvZ-like, dimerisation/phosphoacceptor domain YPA_0931 IPR004358 Signal transduction histidine kinase-related protein, C-terminal YPA_0931 IPR011006 CheY-like superfamily YPA_0931 IPR019017 Signal transduction histidine kinase RcsC, alpha-beta loop, C-terminal YPA_0931 IPR030856 YPA_0931 YPA_0931 IPR036097 YPA_0931 YPA_0931 IPR036890 YPA_0931 YPA_0931 IPR038388 YPA_0931 YPA_0932 IPR000792 Transcription regulator LuxR, C-terminal YPA_0932 IPR001789 Signal transduction response regulator, receiver domain YPA_0932 IPR011006 CheY-like superfamily YPA_0932 IPR016032 Signal transduction response regulator, C-terminal effector YPA_0932 IPR030864 YPA_0932 YPA_0932 IPR036388 YPA_0932 YPA_0933 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain YPA_0933 IPR032306 YPA_0933 YPA_0933 IPR036641 YPA_0933 YPA_0933 IPR038616 YPA_0933 YPA_0934 IPR003594 Histidine kinase-like ATPase, C-terminal domain YPA_0934 IPR036890 YPA_0934 YPA_0935 IPR011701 Major facilitator superfamily YPA_0935 IPR036259 YPA_0935 YPA_0936 IPR001702 Porin, Gram-negative type YPA_0936 IPR001897 Porin, gammaproteobacterial YPA_0936 IPR013793 Porin, Gram-negative type, conserved site YPA_0936 IPR023614 Porin domain YPA_0937 IPR002686 Transposase IS200-like YPA_0937 IPR036515 YPA_0937 YPA_0938 IPR002686 Transposase IS200-like YPA_0938 IPR036515 YPA_0938 YPA_0939 IPR001466 Beta-lactamase-related YPA_0939 IPR012338 Beta-lactamase/transpeptidase-like YPA_0941 IPR036259 YPA_0941 YPA_0942 IPR001279 Beta-lactamase-like YPA_0942 IPR024884 N-acyl-phosphatidylethanolamine-hydrolysing phospholipase D YPA_0942 IPR036866 YPA_0942 YPA_0943 IPR003660 HAMP linker domain YPA_0943 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain YPA_0943 IPR029151 Periplasmic sensor domain-like YPA_0943 IPR033479 YPA_0943 YPA_0944 IPR000036 Peptidase A26, omptin YPA_0944 IPR020080 Outer membrane adhesin/peptidase omptin YPA_0945 IPR010391 DNA damage-inducible protein DinI-like YPA_0945 IPR036687 YPA_0945 YPA_0947 IPR001387 Cro/C1-type helix-turn-helix domain YPA_0947 IPR010982 Lambda repressor-like, DNA-binding domain YPA_0947 IPR015927 Peptidase S24/S26A/S26B/S26C YPA_0947 IPR036286 YPA_0947 YPA_0948 IPR010534 Bacteriophage 933W, GpQ YPA_0949 IPR010737 Protein of unknown function, DUF1537 YPA_0949 IPR031475 YPA_0949 YPA_0949 IPR037051 YPA_0949 YPA_0950 IPR001303 Class II aldolase/adducin N-terminal YPA_0950 IPR036409 YPA_0950 YPA_0951 IPR001034 HTH DeoR N-terminal domain YPA_0951 IPR014036 DeoR C-terminal sensor domain YPA_0951 IPR018356 Transcription regulator, HTH DeoR-type, conserved site YPA_0951 IPR036388 YPA_0951 YPA_0951 IPR036390 YPA_0951 YPA_0951 IPR037171 YPA_0951 YPA_0952 IPR013022 Xylose isomerase-like, TIM barrel domain YPA_0952 IPR026040 Hydroxypyruvate isomerase-like YPA_0952 IPR036237 YPA_0952 YPA_0955 IPR024400 Protein of unknown function DUF2635 YPA_0956 IPR007067 Tail sheath protein YPA_0956 IPR020287 Tail sheath protein, C-terminal domain YPA_0956 IPR035089 YPA_0956 YPA_0957 IPR019596 Bacteriophage Mu, GpM, tail tube YPA_0958 IPR019289 Bacteriophage tail protein Gp41, putative YPA_0960 IPR009826 DNA circulation, N-terminal YPA_0961 IPR023399 Baseplate-like protein, two-layer sandwich domain YPA_0961 IPR026276 Baseplate protein GpP YPA_0962 IPR014462 Bacteriophage Mu, Gp45 YPA_0963 IPR010877 Bacteriophage Mu, Gp46 YPA_0964 IPR006949 Baseplate assembly protein J-like, predicted YPA_0965 IPR018755 Bacteriophage Mu, Gp48 YPA_0966 IPR018755 Bacteriophage Mu, Gp48 YPA_0967 IPR011083 Phage tail collar domain YPA_0967 IPR037053 YPA_0967 YPA_0968 IPR000281 Helix-turn-helix protein RpiR YPA_0968 IPR001347 Sugar isomerase (SIS) YPA_0968 IPR009057 Homeodomain-like YPA_0968 IPR036388 YPA_0968 YPA_0969 IPR001360 Glycoside hydrolase, family 1 YPA_0969 IPR017853 Glycoside hydrolase, superfamily YPA_0969 IPR018120 Glycoside hydrolase, family 1, active site YPA_0969 IPR033132 YPA_0969 YPA_0974 IPR001584 Integrase, catalytic core YPA_0974 IPR006120 Resolvase, HTH domain YPA_0974 IPR009057 Homeodomain-like YPA_0974 IPR012337 Ribonuclease H-like domain YPA_0975 IPR001270 ClpA/B family YPA_0975 IPR002611 IstB-like ATP-binding protein YPA_0975 IPR003593 AAA+ ATPase domain YPA_0975 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPA_0975 IPR028350 DNA replication protein DnaC/insertion sequence putative ATP-binding protein YPA_0978 IPR000917 Sulfatase YPA_0978 IPR012159 Membrane sulfatase, HI0842-related YPA_0978 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha YPA_0978 IPR017850 Alkaline-phosphatase-like, core domain YPA_0978 IPR024588 Membrane sulfatase, HI0842-related, N-terminal domain YPA_0979 IPR009857 Uncharacterised protein family UPF0352 YPA_0979 IPR023202 YejL-like domain YPA_0980 IPR007358 Nucleoid-associated protein NdpA YPA_0981 IPR002686 Transposase IS200-like YPA_0981 IPR036515 YPA_0981 YPA_0982 IPR011035 Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain YPA_0982 IPR020055 Ribosomal protein L25, short-form YPA_0982 IPR020056 Ribosomal protein L25/Gln-tRNA synthetase, beta-barrel domain YPA_0982 IPR029751 Ribosomal protein L25 YPA_0983 IPR001650 Helicase, C-terminal YPA_0983 IPR006935 Helicase/UvrB domain YPA_0983 IPR011332 Zinc-binding ribosomal protein YPA_0983 IPR014001 Helicase, superfamily 1/2, ATP-binding domain YPA_0983 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPA_0984 IPR000748 Pseudouridine synthase, RsuA/RluB/E/F YPA_0984 IPR002942 RNA-binding S4 domain YPA_0984 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F YPA_0984 IPR018496 Pseudouridine synthase, RsuA/RluB/E/F, conserved site YPA_0984 IPR020103 Pseudouridine synthase, catalytic domain YPA_0984 IPR036986 YPA_0984 YPA_0985 IPR004812 Drug resistance transporter Bcr/CmlA subfamily YPA_0985 IPR011701 Major facilitator superfamily YPA_0985 IPR036259 YPA_0985 YPA_0987 IPR020489 Uncharacterised protein family YejG YPA_0988 IPR003439 ABC transporter-like YPA_0988 IPR003593 AAA+ ATPase domain YPA_0988 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal YPA_0988 IPR017871 ABC transporter, conserved site YPA_0988 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPA_0989 IPR000515 MetI-like domain YPA_0989 IPR025966 Oligopeptide transport permease C-like, N-terminal domain YPA_0989 IPR035906 YPA_0989 YPA_0990 IPR000515 MetI-like domain YPA_0990 IPR035906 YPA_0990 YPA_0991 IPR000914 Bacterial extracellular solute-binding protein, family 5 YPA_0991 IPR030678 YPA_0991 YPA_0992 IPR001633 EAL domain YPA_0992 IPR024744 Putative cyclic diguanylate phosphodiesterase, CSS motif-containing domain YPA_0992 IPR035919 YPA_0992 YPA_0993 IPR000064 Endopeptidase, NLPC/P60 domain YPA_0993 IPR038765 YPA_0993 YPA_0994 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase YPA_0994 IPR032908 YPA_0994 YPA_0994 IPR036938 YPA_0994 YPA_0995 IPR003495 CobW/HypB/UreG domain YPA_0995 IPR011629 Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal YPA_0995 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPA_0997 IPR000524 Transcription regulator HTH, GntR YPA_0997 IPR008920 Transcription regulator FadR/GntR, C-terminal YPA_0997 IPR011711 GntR, C-terminal YPA_0997 IPR036388 YPA_0997 YPA_0997 IPR036390 YPA_0997 YPA_0998 IPR000669 Mannitol dehydrogenase YPA_0998 IPR008927 6-phosphogluconate dehydrogenase, C-terminal-like YPA_0998 IPR013118 Mannitol dehydrogenase, C-terminal YPA_0998 IPR013131 Mannitol dehydrogenase, N-terminal YPA_0998 IPR013328 Dehydrogenase, multihelical YPA_0998 IPR023027 Mannitol dehydrogenase, conserved site YPA_0998 IPR036291 YPA_0998 YPA_0999 IPR004628 Mannonate dehydratase YPA_0999 IPR036237 YPA_0999 YPA_1000 IPR001059 Translation elongation factor P/YeiP, central YPA_1000 IPR008991 Translation protein SH3-like domain YPA_1000 IPR011897 Translation elongation factor P-like, YeiP YPA_1000 IPR012340 Nucleic acid-binding, OB-fold YPA_1000 IPR013185 Translation elongation factor, KOW-like YPA_1000 IPR013852 Translation elongation factor P/YeiP, conserved site YPA_1000 IPR014722 Ribosomal protein L2 domain 2 YPA_1000 IPR015365 Elongation factor P, C-terminal YPA_1000 IPR020599 Translation elongation factor P/YeiP YPA_1001 IPR002293 Amino acid/polyamine transporter I YPA_1001 IPR013059 Tryptophan/tyrosine transporter YPA_1001 IPR018227 Tryptophan/tyrosine permease YPA_1002 IPR005358 Putative zinc- or iron-chelating domain containing protein YPA_1003 IPR002347 Glucose/ribitol dehydrogenase YPA_1003 IPR020904 Short-chain dehydrogenase/reductase, conserved site YPA_1003 IPR036291 YPA_1003 YPA_1004 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain YPA_1004 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain YPA_1004 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site YPA_1004 IPR036291 YPA_1004 YPA_1005 IPR011234 Fumarylacetoacetase, C-terminal-related YPA_1005 IPR036663 YPA_1005 YPA_1006 IPR001584 Integrase, catalytic core YPA_1006 IPR012337 Ribonuclease H-like domain YPA_1006 IPR025948 HTH-like domain YPA_1006 IPR036397 YPA_1006 YPA_1007 IPR009057 Homeodomain-like YPA_1007 IPR010921 Trp repressor/replication initiator YPA_1008 IPR015590 Aldehyde dehydrogenase domain YPA_1008 IPR016160 Aldehyde dehydrogenase, cysteine active site YPA_1008 IPR016161 Aldehyde/histidinol dehydrogenase YPA_1008 IPR016162 Aldehyde dehydrogenase, N-terminal YPA_1008 IPR016163 Aldehyde dehydrogenase, C-terminal YPA_1009 IPR000577 YPA_1009 YPA_1009 IPR006000 Xylulokinase YPA_1009 IPR018483 Carbohydrate kinase, FGGY, conserved site YPA_1009 IPR018484 Carbohydrate kinase, FGGY, N-terminal YPA_1009 IPR018485 Carbohydrate kinase, FGGY, C-terminal YPA_1010 IPR004788 Ribose 5-phosphate isomerase, type A YPA_1010 IPR020672 Ribose-5-phosphate isomerase, type A, subgroup YPA_1010 IPR037171 YPA_1010 YPA_1011 IPR025997 Periplasmic binding protein domain YPA_1011 IPR028082 Periplasmic binding protein-like I YPA_1012 IPR003439 ABC transporter-like YPA_1012 IPR003593 AAA+ ATPase domain YPA_1012 IPR017871 ABC transporter, conserved site YPA_1012 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPA_1013 IPR001851 ABC transporter, permease YPA_1014 IPR000086 NUDIX hydrolase domain YPA_1014 IPR015797 NUDIX hydrolase domain-like YPA_1014 IPR020084 NUDIX hydrolase, conserved site YPA_1014 IPR020476 NUDIX hydrolase YPA_1015 IPR000032 Phosphocarrier HPr protein-like YPA_1015 IPR001020 Phosphotransferase system, HPr histidine phosphorylation site YPA_1015 IPR002114 Phosphotransferase system, HPr serine phosphorylation site YPA_1015 IPR002178 PTS EIIA type-2 domain YPA_1015 IPR016152 Phosphotransferase/anion transporter YPA_1015 IPR035895 YPA_1015 YPA_1016 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site YPA_1016 IPR011611 Carbohydrate kinase PfkB YPA_1016 IPR017583 Tagatose/fructose phosphokinase YPA_1016 IPR022463 Fructose 1-phosphate kinase YPA_1016 IPR029056 Ribokinase-like YPA_1017 IPR003352 Phosphotransferase system, EIIC YPA_1017 IPR003353 Phosphotransferase system, fructose-specific IIB subunit YPA_1017 IPR003501 Phosphotransferase system, EIIB component, type 2/3 YPA_1017 IPR006327 Phosphotransferase system, fructose IIC component YPA_1017 IPR036095 YPA_1017 YPA_1018 IPR001867 Signal transduction response regulator, C-terminal YPA_1018 IPR016032 Signal transduction response regulator, C-terminal effector YPA_1018 IPR036388 YPA_1018 YPA_1019 IPR035182 YPA_1019 YPA_1021 IPR001829 Pili assembly chaperone, bacterial YPA_1021 IPR008962 PapD-like YPA_1021 IPR013783 Immunoglobulin-like fold YPA_1021 IPR016147 PapD, N-terminal, bacterial YPA_1021 IPR016148 Pili assembly chaperone, C-terminal domain YPA_1021 IPR018046 Pili assembly chaperone, conserved site YPA_1021 IPR036316 YPA_1021 YPA_1022 IPR000015 Outer membrane usher protein YPA_1022 IPR018030 Fimbrial membrane usher, conserved site YPA_1022 IPR025885 PapC, N-terminal domain YPA_1022 IPR025949 PapC-like, C-terminal domain YPA_1022 IPR037224 YPA_1022 YPA_1023 IPR001719 AP endonuclease 2 YPA_1023 IPR013022 Xylose isomerase-like, TIM barrel domain YPA_1023 IPR018246 AP endonuclease 2, zinc binding site YPA_1023 IPR036237 YPA_1023 YPA_1024 IPR004630 Uncharacterised protein family UPF0324, bacteria YPA_1024 IPR018383 Uncharacterised protein family UPF0324, prokaryote YPA_1025 IPR000847 Transcription regulator HTH, LysR YPA_1025 IPR005119 LysR, substrate-binding YPA_1025 IPR036388 YPA_1025 YPA_1025 IPR036390 YPA_1025 YPA_1026 IPR002293 Amino acid/polyamine transporter I YPA_1026 IPR004840 Amino acid permease, conserved site YPA_1026 IPR004841 Amino acid permease/ SLC12A domain YPA_1027 IPR002491 ABC transporter periplasmic binding domain YPA_1028 IPR000522 ABC transporter, permease protein YPA_1028 IPR037294 YPA_1028 YPA_1029 IPR003439 ABC transporter-like YPA_1029 IPR003593 AAA+ ATPase domain YPA_1029 IPR017871 ABC transporter, conserved site YPA_1029 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPA_1030 IPR000531 TonB-dependent receptor, beta-barrel YPA_1030 IPR010916 TonB box, conserved site YPA_1030 IPR012910 TonB-dependent receptor, plug YPA_1030 IPR036942 YPA_1030 YPA_1030 IPR037066 YPA_1030 YPA_1031 IPR004045 Glutathione S-transferase, N-terminal YPA_1031 IPR004046 Glutathione S-transferase, C-terminal YPA_1031 IPR036249 YPA_1031 YPA_1031 IPR036282 YPA_1031 YPA_1032 IPR006385 HAD-superfamily hydrolase, subfamily IB, PSPase-like, bacterial YPA_1032 IPR023214 HAD-like domain YPA_1032 IPR036412 YPA_1032 YPA_1033 IPR005123 Oxoglutarate/iron-dependent dioxygenase YPA_1033 IPR026992 Non-haem dioxygenase N-terminal domain YPA_1033 IPR027443 Isopenicillin N synthase-like YPA_1034 IPR004872 Lipoprotein NlpA family YPA_1035 IPR003439 ABC transporter-like YPA_1035 IPR003593 AAA+ ATPase domain YPA_1035 IPR017871 ABC transporter, conserved site YPA_1035 IPR018449 NIL domain YPA_1035 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPA_1036 IPR000515 MetI-like domain YPA_1036 IPR035906 YPA_1036 YPA_1037 IPR001967 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A, N-terminal YPA_1037 IPR012338 Beta-lactamase/transpeptidase-like YPA_1037 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A YPA_1038 IPR001270 ClpA/B family YPA_1038 IPR002611 IstB-like ATP-binding protein YPA_1038 IPR003593 AAA+ ATPase domain YPA_1038 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPA_1038 IPR028350 DNA replication protein DnaC/insertion sequence putative ATP-binding protein YPA_1039 IPR001584 Integrase, catalytic core YPA_1039 IPR006120 Resolvase, HTH domain YPA_1039 IPR009057 Homeodomain-like YPA_1039 IPR012337 Ribonuclease H-like domain YPA_1040 IPR013785 Aldolase-type TIM barrel YPA_1041 IPR001345 Phosphoglycerate/bisphosphoglycerate mutase, active site YPA_1041 IPR005952 Phosphoglycerate mutase 1 YPA_1041 IPR013078 Histidine phosphatase superfamily, clade-1 YPA_1041 IPR029033 Histidine phosphatase superfamily YPA_1042 IPR011690 Phosphate-starvation-induced PsiF repeat YPA_1043 IPR008183 Aldose 1-/Glucose-6-phosphate 1-epimerase YPA_1043 IPR011013 Galactose mutarotase-like domain YPA_1043 IPR013458 Aldose 1-epimerase, bacterial YPA_1043 IPR014718 Glycoside hydrolase-type carbohydrate-binding, subgroup YPA_1043 IPR015443 Aldose 1-epimerase YPA_1043 IPR018052 Aldose 1-epimerase, conserved site YPA_1045 IPR000705 Galactokinase YPA_1045 IPR006203 GHMP kinase, ATP-binding, conserved site YPA_1045 IPR006204 GHMP kinase N-terminal domain YPA_1045 IPR006206 Mevalonate/galactokinase YPA_1045 IPR013750 GHMP kinase, C-terminal domain YPA_1045 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup YPA_1045 IPR019539 Galactokinase galactose-binding domain YPA_1045 IPR019741 Galactokinase, conserved site YPA_1045 IPR020568 Ribosomal protein S5 domain 2-type fold YPA_1045 IPR022963 Galactokinase, bacterial YPA_1045 IPR036554 YPA_1045 YPA_1046 IPR001937 Galactose-1-phosphate uridyl transferase, class I YPA_1046 IPR005849 Galactose-1-phosphate uridyl transferase, N-terminal YPA_1046 IPR005850 Galactose-1-phosphate uridyl transferase, C-terminal YPA_1046 IPR019779 Galactose-1-phosphate uridyl transferase, class I His-active site YPA_1046 IPR036265 YPA_1046 YPA_1047 IPR005886 UDP-glucose 4-epimerase GalE YPA_1047 IPR016040 NAD(P)-binding domain YPA_1047 IPR036291 YPA_1047 YPA_1048 IPR003675 CAAX amino terminal protease YPA_1049 IPR003439 ABC transporter-like YPA_1049 IPR003593 AAA+ ATPase domain YPA_1049 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPA_1050 IPR000847 Transcription regulator HTH, LysR YPA_1050 IPR003725 Molybdenum-binding protein, N-terminal YPA_1050 IPR004606 Molybdenum-pterin binding YPA_1050 IPR005116 Transport-associated OB, type 1 YPA_1050 IPR008995 Molybdate/tungstate binding, C-terminal YPA_1050 IPR016462 Molybdate-dependent transcriptional regulator, ModE YPA_1050 IPR036388 YPA_1050 YPA_1050 IPR036390 YPA_1050 YPA_1051 IPR019702 Protein of unknown function DUF2592 YPA_1052 IPR005950 Molybdenum ABC transporter, periplasmic binding protein YPA_1053 IPR000515 MetI-like domain YPA_1053 IPR011867 Molybdate ABC transporter, permease protein YPA_1053 IPR035906 YPA_1053 YPA_1054 IPR003439 ABC transporter-like YPA_1054 IPR003593 AAA+ ATPase domain YPA_1054 IPR004606 Molybdenum-pterin binding YPA_1054 IPR005116 Transport-associated OB, type 1 YPA_1054 IPR008995 Molybdate/tungstate binding, C-terminal YPA_1054 IPR011868 Molybdate ABC transporter, ATP-binding protein YPA_1054 IPR017871 ABC transporter, conserved site YPA_1054 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPA_1055 IPR000150 Cof protein YPA_1055 IPR006379 HAD-superfamily hydrolase, subfamily IIB YPA_1055 IPR023214 HAD-like domain YPA_1055 IPR036412 YPA_1055 YPA_1056 IPR011045 Nitrous oxide reductase, N-terminal YPA_1056 IPR015943 WD40/YVTN repeat-like-containing domain YPA_1056 IPR019405 Lactonase, 7-bladed beta propeller YPA_1056 IPR022528 6-phosphogluconolactonase, YbhE-type YPA_1057 IPR005814 Aminotransferase class-III YPA_1057 IPR005815 Adenosylmethionine--8-amino-7-oxononanoate aminotransferase BioA YPA_1057 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 YPA_1057 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 YPA_1057 IPR015424 Pyridoxal phosphate-dependent transferase YPA_1058 IPR002684 Biotin synthase/Biotin biosynthesis bifunctional protein BioAB YPA_1058 IPR006638 Elongator protein 3/MiaB/NifB YPA_1058 IPR007197 Radical SAM YPA_1058 IPR010722 Biotin and thiamin synthesis-associated domain YPA_1058 IPR013785 Aldolase-type TIM barrel YPA_1058 IPR024177 Biotin synthase YPA_1059 IPR001917 Aminotransferase, class-II, pyridoxal-phosphate binding site YPA_1059 IPR004723 8-amino-7-oxononanoate synthase, Archaea/Proteobacteria type YPA_1059 IPR004839 Aminotransferase, class I/classII YPA_1059 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 YPA_1059 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 YPA_1059 IPR015424 Pyridoxal phosphate-dependent transferase YPA_1059 IPR022834 8-amino-7-oxononanoate synthase, Proteobacteria YPA_1060 IPR011814 Malonyl-[acyl-carrier protein] O-methyltransferase BioC YPA_1060 IPR013216 Methyltransferase type 11 YPA_1060 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase-like YPA_1061 IPR004472 Dethiobiotin synthase BioD YPA_1061 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPA_1062 IPR003439 ABC transporter-like YPA_1062 IPR003593 AAA+ ATPase domain YPA_1062 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPA_1063 IPR001650 Helicase, C-terminal YPA_1063 IPR001943 UVR domain YPA_1063 IPR004807 UvrABC system, subunit B YPA_1063 IPR006935 Helicase/UvrB domain YPA_1063 IPR014001 Helicase, superfamily 1/2, ATP-binding domain YPA_1063 IPR024759 UvrB, YAD/RRR-motif-containing domain YPA_1063 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPA_1063 IPR036876 YPA_1063 YPA_1064 IPR018668 Protein of unknown function DUF2132 YPA_1064 IPR036361 YPA_1064 YPA_1065 IPR002882 LPPG:FO 2-phospho-L-lactate transferase CofD/UPF0052 YPA_1065 IPR010119 Gluconeogenesis factor YPA_1065 IPR038136 YPA_1065 YPA_1066 IPR000385 MoaA/nifB/pqqE, iron-sulphur binding, conserved site YPA_1066 IPR006638 Elongator protein 3/MiaB/NifB YPA_1066 IPR007197 Radical SAM YPA_1066 IPR010505 Molybdenum cofactor synthesis C-terminal YPA_1066 IPR013483 Molybdenum cofactor biosynthesis protein A YPA_1066 IPR013785 Aldolase-type TIM barrel YPA_1067 IPR002820 Molybdopterin cofactor biosynthesis C (MoaC) domain YPA_1067 IPR023045 Molybdenum cofactor biosynthesis C YPA_1067 IPR036522 YPA_1067 YPA_1068 IPR003749 ThiamineS/Molybdopterin converting factor subunit 1 YPA_1068 IPR012675 Beta-grasp domain YPA_1068 IPR016155 Molybdopterin synthase/thiamin biosynthesis sulphur carrier, beta-grasp YPA_1069 IPR003448 Molybdopterin biosynthesis MoaE YPA_1069 IPR036563 YPA_1069 YPA_1070 IPR006214 Bax inhibitor 1-related YPA_1071 IPR006214 Bax inhibitor 1-related YPA_1072 IPR002686 Transposase IS200-like YPA_1072 IPR036515 YPA_1072 YPA_1073 IPR000172 Glucose-methanol-choline oxidoreductase, N-terminal YPA_1073 IPR007867 Glucose-methanol-choline oxidoreductase, C-terminal YPA_1073 IPR011533 Oxygen-dependent choline dehydrogenase YPA_1073 IPR012132 Glucose-methanol-choline oxidoreductase YPA_1073 IPR027424 Glucose Oxidase, domain 2 YPA_1073 IPR036188 YPA_1073 YPA_1074 IPR011264 NAD/NADP-dependent betaine aldehyde dehydrogenase YPA_1074 IPR015590 Aldehyde dehydrogenase domain YPA_1074 IPR016160 Aldehyde dehydrogenase, cysteine active site YPA_1074 IPR016161 Aldehyde/histidinol dehydrogenase YPA_1074 IPR016162 Aldehyde dehydrogenase, N-terminal YPA_1074 IPR016163 Aldehyde dehydrogenase, C-terminal YPA_1074 IPR029510 Aldehyde dehydrogenase, glutamic acid active site YPA_1075 IPR001647 DNA-binding HTH domain, TetR-type YPA_1075 IPR009057 Homeodomain-like YPA_1075 IPR017757 Transcriptional repressor BetI YPA_1075 IPR023772 DNA-binding HTH domain, TetR-type, conserved site YPA_1075 IPR036271 YPA_1075 YPA_1075 IPR039538 YPA_1075 YPA_1076 IPR000060 BCCT transporter family YPA_1076 IPR018093 BCCT transporter, conserved site YPA_1077 IPR000847 Transcription regulator HTH, LysR YPA_1077 IPR005119 LysR, substrate-binding YPA_1077 IPR036388 YPA_1077 YPA_1077 IPR036390 YPA_1077 YPA_1078 IPR000620 Drug/metabolite transporter YPA_1079 IPR000845 Nucleoside phosphorylase domain YPA_1079 IPR010943 Xanthosine phosphorylase YPA_1079 IPR011268 Purine nucleoside phosphorylase YPA_1079 IPR011270 Purine nucleoside phosphorylase I, inosine/guanosine-specific YPA_1079 IPR035994 YPA_1079 YPA_1080 IPR004740 Nucleoside:H+ symporter YPA_1080 IPR036259 YPA_1080 YPA_1081 IPR002686 Transposase IS200-like YPA_1081 IPR036515 YPA_1081 YPA_1082 IPR004740 Nucleoside:H+ symporter YPA_1082 IPR036259 YPA_1082 YPA_1083 IPR020365 Zinc resistance-associated protein, ZraP YPA_1083 IPR025961 Heavy-metal resistance protein YPA_1084 IPR000014 PAS domain YPA_1084 IPR003594 Histidine kinase-like ATPase, C-terminal domain YPA_1084 IPR003661 Signal transduction histidine kinase EnvZ-like, dimerisation/phosphoacceptor domain YPA_1084 IPR004358 Signal transduction histidine kinase-related protein, C-terminal YPA_1084 IPR013767 PAS fold YPA_1084 IPR029151 Periplasmic sensor domain-like YPA_1084 IPR033463 YPA_1084 YPA_1084 IPR035965 YPA_1084 YPA_1084 IPR036097 YPA_1084 YPA_1084 IPR036890 YPA_1084 YPA_1085 IPR001789 Signal transduction response regulator, receiver domain YPA_1085 IPR002078 RNA polymerase sigma factor 54 interaction domain YPA_1085 IPR002197 DNA binding HTH domain, Fis-type YPA_1085 IPR003593 AAA+ ATPase domain YPA_1085 IPR009057 Homeodomain-like YPA_1085 IPR011006 CheY-like superfamily YPA_1085 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 YPA_1085 IPR025944 Sigma-54 interaction domain, conserved site YPA_1085 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPA_1086 IPR001155 NADH:flavin oxidoreductase/NADH oxidase, N-terminal YPA_1086 IPR013785 Aldolase-type TIM barrel YPA_1087 IPR000847 Transcription regulator HTH, LysR YPA_1087 IPR005119 LysR, substrate-binding YPA_1087 IPR036388 YPA_1087 YPA_1087 IPR036390 YPA_1087 YPA_1089 IPR009799 EthD domain YPA_1089 IPR011008 Dimeric alpha-beta barrel YPA_1090 IPR000412 ABC-2 transporter YPA_1092 IPR003439 ABC transporter-like YPA_1092 IPR003593 AAA+ ATPase domain YPA_1092 IPR017871 ABC transporter, conserved site YPA_1092 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPA_1093 IPR022936 Uncharacterised protein family UPF0194, membrane protein YbhG YPA_1093 IPR032317 YPA_1093 YPA_1094 IPR001647 DNA-binding HTH domain, TetR-type YPA_1094 IPR009057 Homeodomain-like YPA_1094 IPR015292 Transcription regulator YbiH, C-terminal YPA_1094 IPR023772 DNA-binding HTH domain, TetR-type, conserved site YPA_1094 IPR036271 YPA_1094 YPA_1095 IPR000629 RNA helicase, ATP-dependent, DEAD-box, conserved site YPA_1095 IPR001650 Helicase, C-terminal YPA_1095 IPR011545 DEAD/DEAH box helicase domain YPA_1095 IPR014001 Helicase, superfamily 1/2, ATP-binding domain YPA_1095 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPA_1095 IPR028622 ATP-dependent RNA helicase RhlE YPA_1097 IPR038717 YPA_1097 YPA_1101 IPR001207 Transposase, mutator type YPA_1102 IPR000843 Transcription regulator HTH, LacI YPA_1102 IPR001761 Periplasmic binding protein/LacI sugar binding domain YPA_1102 IPR010982 Lambda repressor-like, DNA-binding domain YPA_1102 IPR028082 Periplasmic binding protein-like I YPA_1103 IPR001584 Integrase, catalytic core YPA_1103 IPR006120 Resolvase, HTH domain YPA_1103 IPR009057 Homeodomain-like YPA_1103 IPR012337 Ribonuclease H-like domain YPA_1104 IPR001270 ClpA/B family YPA_1104 IPR002611 IstB-like ATP-binding protein YPA_1104 IPR003593 AAA+ ATPase domain YPA_1104 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPA_1104 IPR028350 DNA replication protein DnaC/insertion sequence putative ATP-binding protein YPA_1106 IPR010384 MtfA family YPA_1106 IPR024079 Metallopeptidase, catalytic domain YPA_1107 IPR005545 YCII-related YPA_1107 IPR011008 Dimeric alpha-beta barrel YPA_1108 IPR000687 RIO kinase YPA_1108 IPR011009 Protein kinase-like domain YPA_1108 IPR018935 RIO kinase, conserved site YPA_1109 IPR003439 ABC transporter-like YPA_1109 IPR003593 AAA+ ATPase domain YPA_1109 IPR011527 ABC transporter type 1, transmembrane domain YPA_1109 IPR017871 ABC transporter, conserved site YPA_1109 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPA_1109 IPR036640 YPA_1109 YPA_1111 IPR009057 Homeodomain-like YPA_1111 IPR018060 DNA binding HTH domain, AraC-type YPA_1111 IPR020449 Transcription regulator HTH, AraC- type YPA_1112 IPR020262 Uncharacterised protein family YecJ YPA_1113 IPR025611 YobH-like protein YPA_1114 IPR025594 YebO-like protein YPA_1115 IPR019701 Bacteriophage P22, NinX YPA_1116 IPR025135 Protein of unknown function DUF4060 YPA_1117 IPR002293 Amino acid/polyamine transporter I YPA_1117 IPR004840 Amino acid permease, conserved site YPA_1117 IPR004841 Amino acid permease/ SLC12A domain YPA_1118 IPR009746 Antimicrobial peptide resistance/lipid A acylation PagP YPA_1118 IPR011250 Outer membrane protein/outer membrane enzyme PagP , beta-barrel YPA_1119 IPR019672 Protein of unknown function DUF2627 YPA_1120 IPR002059 Cold-shock protein, DNA-binding YPA_1120 IPR011129 Cold shock protein YPA_1120 IPR012156 Cold shock, CspA YPA_1120 IPR012340 Nucleic acid-binding, OB-fold YPA_1120 IPR019844 Cold-shock conserved site YPA_1121 IPR003730 Multi-copper polyphenol oxidoreductase, laccase YPA_1121 IPR011324 Cytotoxic necrotizing factor-like, catalytic YPA_1121 IPR038371 YPA_1121 YPA_1122 IPR016718 rRNA (guanine-N1-)-methyltransferase A, predicted YPA_1122 IPR025714 Methyltransferase domain YPA_1122 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase-like YPA_1124 IPR000014 PAS domain YPA_1124 IPR000160 GGDEF domain YPA_1124 IPR001610 PAC motif YPA_1124 IPR013767 PAS fold YPA_1124 IPR029787 Nucleotide cyclase YPA_1124 IPR035965 YPA_1124 YPA_1125 IPR000531 TonB-dependent receptor, beta-barrel YPA_1125 IPR010105 TonB-dependent siderophore receptor YPA_1125 IPR010917 TonB-dependent receptor, conserved site YPA_1125 IPR012910 TonB-dependent receptor, plug YPA_1125 IPR036942 YPA_1125 YPA_1125 IPR037066 YPA_1125 YPA_1126 IPR003810 Domain of unknown function DUF204 YPA_1126 IPR022929 Putative manganese efflux pump MntP YPA_1127 IPR009328 Protein of unknown function DUF986 YPA_1128 IPR004704 Phosphotransferase system, mannose/fructose/sorbose family IID component YPA_1129 IPR004700 Phosphotransferase system, sorbose-specific IIC subunit YPA_1130 IPR004701 Phosphotransferase system, mannose-type IIA component YPA_1130 IPR004720 Phosphotransferase system, sorbose subfamily IIB component YPA_1130 IPR013789 Phosphotransferase system, mannose family IIA component YPA_1130 IPR018455 Phosphotransferase system, sorbose subfamily IIB component, subgroup YPA_1130 IPR036662 YPA_1130 YPA_1130 IPR036667 YPA_1130 YPA_1131 IPR000644 CBS domain YPA_1131 IPR005170 Transporter-associated domain YPA_1131 IPR005496 Integral membrane protein TerC YPA_1131 IPR016169 CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2 YPA_1131 IPR036318 YPA_1131 YPA_1132 IPR000835 MarR-type HTH domain YPA_1132 IPR012712 Homoprotocatechuate degradation transcriptional regulator HpaR YPA_1132 IPR036388 YPA_1132 YPA_1132 IPR036390 YPA_1132 YPA_1133 IPR011234 Fumarylacetoacetase, C-terminal-related YPA_1133 IPR012686 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase, N-terminal subunit YPA_1133 IPR036663 YPA_1133 YPA_1134 IPR011234 Fumarylacetoacetase, C-terminal-related YPA_1134 IPR012684 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase, C-terminal subunit YPA_1134 IPR036663 YPA_1134 YPA_1135 IPR015590 Aldehyde dehydrogenase domain YPA_1135 IPR016160 Aldehyde dehydrogenase, cysteine active site YPA_1135 IPR016161 Aldehyde/histidinol dehydrogenase YPA_1135 IPR016162 Aldehyde dehydrogenase, N-terminal YPA_1135 IPR016163 Aldehyde dehydrogenase, C-terminal YPA_1135 IPR029510 Aldehyde dehydrogenase, glutamic acid active site YPA_1136 IPR004183 Extradiol ring-cleavage dioxygenase, class III enzyme, subunit B YPA_1136 IPR011984 3,4-dihydroxyphenylacetate 2,3-dioxygenase HpaD-Fe YPA_1137 IPR004220 5-carboxymethyl-2-hydroxymuconate isomerase YPA_1137 IPR014347 Tautomerase/MIF superfamily YPA_1138 IPR012690 2-oxo-hepta-3-ene-1,7-dioic acid hydratase YPA_1138 IPR036663 YPA_1138 YPA_1139 IPR005000 HpcH/HpaI aldolase/citrate lyase domain YPA_1139 IPR012689 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase YPA_1139 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain YPA_1140 IPR011701 Major facilitator superfamily YPA_1140 IPR012707 4-hydroxyphenylacetate permease YPA_1140 IPR024671 Autophagy-related protein 22-like YPA_1140 IPR036259 YPA_1140 YPA_1141 IPR004925 HpaB/PvcC/4-BUDH YPA_1141 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain YPA_1141 IPR012688 4-HPA 3-monooxygenase large component, gammaproteobacteria YPA_1141 IPR024674 HpaB/PvcC/4-BUDH N-terminal YPA_1141 IPR024677 4-HPA 3-monooxygenase large component/Pyoverdin chromophore biosynthetic protein YPA_1141 IPR024719 HpaB/PvcC/4-BUDH C-terminal YPA_1141 IPR036250 YPA_1141 YPA_1142 IPR002563 Flavin reductase-like, FMN-binding YPA_1142 IPR011982 4-hydroxyphenylacetate 3-monooxygenase, reductase component YPA_1142 IPR012349 FMN-binding split barrel YPA_1143 IPR004644 Iron-sulphur-dependent L-serine dehydratase single chain form YPA_1143 IPR005130 Serine dehydratase-like, alpha subunit YPA_1143 IPR005131 Serine dehydratase beta chain YPA_1143 IPR029009 Allosteric substrate binding domain YPA_1144 IPR000059 NUDIX hydrolase, NudL, conserved site YPA_1144 IPR000086 NUDIX hydrolase domain YPA_1144 IPR015797 NUDIX hydrolase domain-like YPA_1144 IPR023735 Uncharacterised nudix hydrolase NudL YPA_1145 IPR005801 ADC synthase YPA_1145 IPR005802 Para-aminobenzoate synthase, component I YPA_1145 IPR006805 Anthranilate synthase component I, N-terminal YPA_1145 IPR015890 Chorismate binding, C-terminal YPA_1145 IPR019999 Anthranilate synthase component I - like YPA_1146 IPR005371 Uncharacterised protein family UPF0181 YPA_1147 IPR003135 ATP-grasp fold, ATP-dependent carboxylate-amine ligase-type YPA_1147 IPR005862 Phosphoribosylglycinamide formyltransferase 2 YPA_1147 IPR011054 Rudiment single hybrid motif YPA_1147 IPR013815 ATP-grasp fold, subdomain 1 YPA_1147 IPR016185 Pre-ATP-grasp domain YPA_1148 IPR000629 RNA helicase, ATP-dependent, DEAD-box, conserved site YPA_1148 IPR001650 Helicase, C-terminal YPA_1148 IPR005580 DbpA, RNA-binding YPA_1148 IPR011545 DEAD/DEAH box helicase domain YPA_1148 IPR012677 Nucleotide-binding, alpha-beta plait YPA_1148 IPR014001 Helicase, superfamily 1/2, ATP-binding domain YPA_1148 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPA_1148 IPR028619 ATP-dependent RNA helicase DbpA YPA_1149 IPR009813 Uncharacterised protein family YebG YPA_1149 IPR038627 YPA_1149 YPA_1150 IPR007374 ASCH domain YPA_1150 IPR008314 Uncharacterised conserved protein UCP029143 YPA_1150 IPR015947 PUA-like domain YPA_1151 IPR020236 Uncharacterised protein family YebF YPA_1151 IPR025603 YebF/Colicin-M immunity protein YPA_1151 IPR038703 YPA_1151 YPA_1152 IPR001375 Peptidase S9, prolyl oligopeptidase, catalytic domain YPA_1152 IPR002470 Peptidase S9A, prolyl oligopeptidase YPA_1152 IPR023302 Peptidase S9A, N-terminal domain YPA_1152 IPR029058 Alpha/Beta hydrolase fold YPA_1154 IPR001584 Integrase, catalytic core YPA_1154 IPR006120 Resolvase, HTH domain YPA_1154 IPR009057 Homeodomain-like YPA_1154 IPR012337 Ribonuclease H-like domain YPA_1155 IPR001270 ClpA/B family YPA_1155 IPR002611 IstB-like ATP-binding protein YPA_1155 IPR003593 AAA+ ATPase domain YPA_1155 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPA_1155 IPR028350 DNA replication protein DnaC/insertion sequence putative ATP-binding protein YPA_1156 IPR000073 Alpha/beta hydrolase fold-1 YPA_1156 IPR002410 Peptidase S33 YPA_1156 IPR005944 Proline iminopeptidase YPA_1156 IPR029058 Alpha/Beta hydrolase fold YPA_1157 IPR009052 DNA polymerase III-theta, bacterial YPA_1157 IPR036745 YPA_1157 YPA_1158 IPR008331 Ferritin/DPS protein domain YPA_1158 IPR009078 Ferritin-like superfamily YPA_1158 IPR012347 Ferritin-related YPA_1159 IPR007348 CopC domain YPA_1159 IPR014756 Immunoglobulin E-set YPA_1160 IPR008457 Copper resistance D YPA_1161 IPR019648 Protein of unknown function DUF2511 YPA_1162 IPR010862 Protein of unknown function DUF1493 YPA_1164 IPR006135 Type III secretion system substrate exporter YPA_1164 IPR006136 Type III exporter system, flagellar biosynthetic protein FlhB YPA_1164 IPR029025 Type III secretion system substrate exporter, C-terminal YPA_1165 IPR001712 Type III secretion system FHIPEP YPA_1165 IPR025505 FHIPEP conserved site YPA_1166 IPR001712 Type III secretion system FHIPEP YPA_1167 IPR009420 Flagellar FlhE YPA_1168 IPR003535 Intimin/invasin bacterial adhesion mediator protein YPA_1168 IPR024519 Domain of unknown function DUF3442, intimin/invasin YPA_1168 IPR038177 YPA_1168 YPA_1169 IPR002686 Transposase IS200-like YPA_1169 IPR036515 YPA_1169 YPA_1170 IPR003344 Bacterial Ig-like, group 1 YPA_1170 IPR008964 Invasin/intimin cell-adhesion YPA_1170 IPR013117 Intimin, C-terminal YPA_1170 IPR013783 Immunoglobulin-like fold YPA_1170 IPR015217 Invasin, domain 3 YPA_1170 IPR016186 C-type lectin-like YPA_1170 IPR016187 C-type lectin fold YPA_1170 IPR024519 Domain of unknown function DUF3442, intimin/invasin YPA_1170 IPR038177 YPA_1170 YPA_1171 IPR007809 FlgN-like domain YPA_1171 IPR036679 YPA_1171 YPA_1172 IPR007412 Anti-sigma-28 factor, FlgM YPA_1172 IPR031316 YPA_1172 YPA_1172 IPR035890 YPA_1172 YPA_1173 IPR013974 SAF domain YPA_1173 IPR017585 Flagella basal body P-ring formation protein FlgA, C-terminal YPA_1174 IPR001444 Flagellar basal body rod protein, N-terminal YPA_1174 IPR006300 Flagellar basal-body rod protein FlgB YPA_1174 IPR019776 Flagellar basal body rod protein, conserved site YPA_1175 IPR001444 Flagellar basal body rod protein, N-terminal YPA_1175 IPR006299 Flagellar basal-body rod protein FlgC YPA_1175 IPR010930 Flagellar basal-body/hook protein, C-terminal domain YPA_1175 IPR019776 Flagellar basal body rod protein, conserved site YPA_1176 IPR005648 Flagellar hook capping protein YPA_1176 IPR025963 FlgD Tudor-like domain YPA_1176 IPR025965 FlgD Ig-like domain YPA_1177 IPR001444 Flagellar basal body rod protein, N-terminal YPA_1177 IPR010930 Flagellar basal-body/hook protein, C-terminal domain YPA_1177 IPR011491 Flagellar basal body FlaE YPA_1177 IPR019776 Flagellar basal body rod protein, conserved site YPA_1177 IPR020013 Fagellar hook-basal body protein, FlgE/F/G YPA_1177 IPR037058 YPA_1177 YPA_1177 IPR037925 YPA_1177 YPA_1178 IPR001444 Flagellar basal body rod protein, N-terminal YPA_1178 IPR020013 Fagellar hook-basal body protein, FlgE/F/G YPA_1178 IPR037925 YPA_1178 YPA_1179 IPR010930 Flagellar basal-body/hook protein, C-terminal domain YPA_1179 IPR012834 Flagellar basal-body rod FlgG YPA_1179 IPR020013 Fagellar hook-basal body protein, FlgE/F/G YPA_1179 IPR037925 YPA_1179 YPA_1180 IPR000527 Flagellar L-ring protein YPA_1181 IPR001782 Flagellar P-ring protein YPA_1182 IPR002901 Mannosyl-glycoprotein endo-beta-N-acetylglucosamidase-like domain YPA_1182 IPR013377 Flagellar rod assembly protein/muramidase FlgJ YPA_1182 IPR019301 Flagellar protein FlgJ, N-terminal YPA_1183 IPR001444 Flagellar basal body rod protein, N-terminal YPA_1183 IPR002371 Flagellar hook-associated protein, FlgK YPA_1183 IPR010930 Flagellar basal-body/hook protein, C-terminal domain YPA_1184 IPR001029 Flagellin, D0/D1 domain YPA_1184 IPR013384 Flagellar hook-associated protein 3 YPA_1185 IPR007324 Sugar-binding domain, putative YPA_1185 IPR013324 RNA polymerase sigma factor, region 3/4 YPA_1185 IPR037171 YPA_1185 YPA_1186 IPR001303 Class II aldolase/adducin N-terminal YPA_1186 IPR002347 Glucose/ribitol dehydrogenase YPA_1186 IPR020904 Short-chain dehydrogenase/reductase, conserved site YPA_1186 IPR036291 YPA_1186 YPA_1186 IPR036409 YPA_1186 YPA_1187 IPR001851 ABC transporter, permease YPA_1188 IPR025997 Periplasmic binding protein domain YPA_1188 IPR028082 Periplasmic binding protein-like I YPA_1189 IPR003439 ABC transporter-like YPA_1189 IPR003593 AAA+ ATPase domain YPA_1189 IPR017871 ABC transporter, conserved site YPA_1189 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPA_1190 IPR001851 ABC transporter, permease YPA_1191 IPR011611 Carbohydrate kinase PfkB YPA_1191 IPR029056 Ribokinase-like YPA_1192 IPR031807 YPA_1192 YPA_1192 IPR035069 YPA_1192 YPA_1193 IPR012933 HicA mRNA interferase family YPA_1193 IPR038570 YPA_1193 YPA_1194 IPR002010 Type III secretion system inner membrane R protein YPA_1194 IPR006303 Flagellar biosynthesis protein FliR YPA_1195 IPR002191 Bacterial export protein family 3 YPA_1195 IPR006305 Flagellar biosynthesis protein FliQ YPA_1196 IPR005837 Flagellar transport protein FliP YPA_1196 IPR005838 Type III secretion system inner membrane P protein YPA_1197 IPR022781 Flagellar biosynthesis protein, FliO YPA_1198 IPR001172 Flagellar motor switch FliN/Type III secretion HrcQb YPA_1198 IPR001543 Surface presentation of antigen (SpoA) YPA_1198 IPR012826 Flagellar motor switch FliN YPA_1198 IPR031576 YPA_1198 YPA_1198 IPR036429 YPA_1198 YPA_1199 IPR001543 Surface presentation of antigen (SpoA) YPA_1199 IPR001689 Flagellar motor switch protein FliM YPA_1199 IPR028976 CheC-like domain YPA_1199 IPR036429 YPA_1199 YPA_1200 IPR005503 Flagellar basal body-associated protein FliL YPA_1201 IPR001635 Flagellar hook-length control protein FliK YPA_1201 IPR021136 Flagellar hook-length control protein-like, C-terminal YPA_1201 IPR038610 YPA_1201 YPA_1202 IPR012823 Flagellar export FliJ YPA_1202 IPR018006 Flagellar FliJ, proteobacteria YPA_1203 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain YPA_1203 IPR003593 AAA+ ATPase domain YPA_1203 IPR005714 ATPase, type III secretion system, FliI/YscN YPA_1203 IPR020003 ATPase, alpha/beta subunit, nucleotide-binding domain, active site YPA_1203 IPR020005 Flagellar export ATPase FliI, clade 1 YPA_1203 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPA_1204 IPR000563 Flagellar assembly protein FliH YPA_1204 IPR018035 Flagellar assembly protein FliH/Type III secretion system HrpE YPA_1205 IPR000090 Flagellar motor switch protein FliG YPA_1205 IPR011002 Flagellar motor switch protein FliG, alpha-helical YPA_1205 IPR023087 YPA_1205 YPA_1205 IPR028263 Flagellar motor switch protein FliG, N-terminal domain YPA_1205 IPR032779 YPA_1205 YPA_1206 IPR000067 Flagellar M-ring protein FliF YPA_1206 IPR006182 Secretory protein YscJ/FliF YPA_1206 IPR013556 Flagellar M-ring C-terminal YPA_1207 IPR001624 Flagellar hook-basal body complex protein FliE YPA_1209 IPR003812 Fido domain YPA_1209 IPR006440 Death on curing protein YPA_1210 IPR003265 HhH-GPD domain YPA_1210 IPR011257 DNA glycosylase YPA_1212 IPR029016 GAF domain-like YPA_1214 IPR009057 Homeodomain-like YPA_1214 IPR018060 DNA binding HTH domain, AraC-type YPA_1214 IPR020449 Transcription regulator HTH, AraC- type YPA_1214 IPR037923 YPA_1214 YPA_1215 IPR008622 Flagellar protein FliT YPA_1216 IPR003713 Flagellar protein FliS YPA_1216 IPR036584 YPA_1216 YPA_1217 IPR003481 Flagellar hook-associated protein 2, N-terminal YPA_1217 IPR010809 Flagellar hook-associated 2, C-terminal YPA_1217 IPR010810 Flagellin hook, IN motif YPA_1218 IPR001029 Flagellin, D0/D1 domain YPA_1218 IPR001492 Flagellin YPA_1219 IPR000943 RNA polymerase sigma-70 YPA_1219 IPR007624 RNA polymerase sigma-70 region 3 YPA_1219 IPR007627 RNA polymerase sigma-70 region 2 YPA_1219 IPR007630 RNA polymerase sigma-70 region 4 YPA_1219 IPR012845 RNA polymerase sigma factor, FliA/WhiG YPA_1219 IPR013324 RNA polymerase sigma factor, region 3/4 YPA_1219 IPR013325 RNA polymerase sigma factor, region 2 YPA_1219 IPR014284 RNA polymerase sigma-70 like domain YPA_1219 IPR028617 RNA polymerase sigma factor FliA YPA_1220 IPR004107 Integrase, SAM-like, N-terminal YPA_1220 IPR022523 Flagellar regulator, FliZ YPA_1221 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme YPA_1221 IPR005966 D-cysteine desulfhydrase YPA_1221 IPR023702 D-cysteine desulphhydrase, bacterial YPA_1221 IPR027278 1-aminocyclopropane-1-carboxylate deaminase/D-cysteine desulfhydrase YPA_1221 IPR036052 YPA_1221 YPA_1222 IPR001320 Ionotropic glutamate receptor YPA_1222 IPR001638 Extracellular solute-binding protein, family 3 YPA_1222 IPR018313 Extracellular solute-binding protein, family 3, conserved site YPA_1223 IPR000515 MetI-like domain YPA_1223 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain, His/Glu/Gln/Arg/opine family YPA_1223 IPR035906 YPA_1223 YPA_1224 IPR003439 ABC transporter-like YPA_1224 IPR003593 AAA+ ATPase domain YPA_1224 IPR017871 ABC transporter, conserved site YPA_1224 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPA_1224 IPR030679 YPA_1224 YPA_1225 IPR036388 YPA_1225 YPA_1225 IPR036390 YPA_1225 YPA_1227 IPR001270 ClpA/B family YPA_1227 IPR002611 IstB-like ATP-binding protein YPA_1227 IPR003593 AAA+ ATPase domain YPA_1227 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPA_1227 IPR028350 DNA replication protein DnaC/insertion sequence putative ATP-binding protein YPA_1228 IPR001584 Integrase, catalytic core YPA_1228 IPR006120 Resolvase, HTH domain YPA_1228 IPR009057 Homeodomain-like YPA_1228 IPR012337 Ribonuclease H-like domain YPA_1229 IPR002872 Proline dehydrogenase domain YPA_1229 IPR005933 Delta-1-pyrroline-5-carboxylate dehydrogenase 3 YPA_1229 IPR010985 Ribbon-helix-helix YPA_1229 IPR013321 Arc-type ribbon-helix-helix YPA_1229 IPR015590 Aldehyde dehydrogenase domain YPA_1229 IPR016160 Aldehyde dehydrogenase, cysteine active site YPA_1229 IPR016161 Aldehyde/histidinol dehydrogenase YPA_1229 IPR016162 Aldehyde dehydrogenase, N-terminal YPA_1229 IPR016163 Aldehyde dehydrogenase, C-terminal YPA_1229 IPR024082 Proline dehydrogenase PutA, domain II YPA_1229 IPR024089 Proline dehydrogenase PutA, domain I/II YPA_1229 IPR024090 Proline dehydrogenase PutA, domain I YPA_1229 IPR025703 Bifunctional protein PutA YPA_1229 IPR029041 FAD-linked oxidoreductase-like YPA_1229 IPR029510 Aldehyde dehydrogenase, glutamic acid active site YPA_1231 IPR001734 Sodium/solute symporter YPA_1231 IPR011851 Sodium/proline symporter YPA_1231 IPR018212 Sodium/solute symporter, conserved site YPA_1231 IPR038377 YPA_1231 YPA_1232 IPR004923 Iron permease FTR1/Fip1/EfeU YPA_1233 IPR008972 Cupredoxin YPA_1233 IPR018976 YPA_1233 YPA_1233 IPR028096 EfeO-type cupredoxin-like domain YPA_1233 IPR038352 YPA_1233 YPA_1234 IPR006314 Dyp-type peroxidase YPA_1234 IPR011008 Dimeric alpha-beta barrel YPA_1235 IPR006314 Dyp-type peroxidase YPA_1235 IPR011008 Dimeric alpha-beta barrel YPA_1236 IPR005025 NADPH-dependent FMN reductase-like YPA_1236 IPR010089 Flavoprotein WrbA YPA_1236 IPR029039 Flavoprotein-like YPA_1236 IPR037513 YPA_1236 YPA_1237 IPR006652 Kelch repeat type 1 YPA_1237 IPR015915 Kelch-type beta propeller YPA_1237 IPR019936 Mutatrotase, YjhT-like YPA_1238 IPR002293 Amino acid/polyamine transporter I YPA_1238 IPR004840 Amino acid permease, conserved site YPA_1238 IPR004841 Amino acid permease/ SLC12A domain YPA_1239 IPR000758 Virulence-related outer membrane protein YPA_1239 IPR011250 Outer membrane protein/outer membrane enzyme PagP , beta-barrel YPA_1239 IPR027385 Outer membrane protein beta-barrel YPA_1241 IPR009707 GlpM YPA_1243 IPR000792 Transcription regulator LuxR, C-terminal YPA_1243 IPR001789 Signal transduction response regulator, receiver domain YPA_1243 IPR011006 CheY-like superfamily YPA_1243 IPR016032 Signal transduction response regulator, C-terminal effector YPA_1244 IPR000305 GIY-YIG nuclease superfamily YPA_1244 IPR001162 UvrC family homology region YPA_1244 IPR001943 UVR domain YPA_1244 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 YPA_1244 IPR004791 UvrABC system, subunit C YPA_1244 IPR010994 RuvA domain 2-like YPA_1244 IPR035901 YPA_1244 YPA_1244 IPR036876 YPA_1244 YPA_1244 IPR038476 YPA_1244 YPA_1245 IPR000462 CDP-alcohol phosphatidyltransferase YPA_1245 IPR004570 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase YPA_1245 IPR023762 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase, bacterial YPA_1246 IPR010998 Integrase, Lambda-type, N-terminal YPA_1246 IPR011010 DNA breaking-rejoining enzyme, catalytic core YPA_1246 IPR013762 Integrase-like, catalytic core YPA_1247 IPR007694 DNA helicase, DnaB-like, C-terminal YPA_1249 IPR008514 Type VI secretion system effector, Hcp YPA_1249 IPR036624 YPA_1249 YPA_1250 IPR001584 Integrase, catalytic core YPA_1250 IPR012337 Ribonuclease H-like domain YPA_1250 IPR036397 YPA_1250 YPA_1251 IPR002514 Transposase IS3/IS911family YPA_1253 IPR021225 Protein of unknown function DUF2778 YPA_1255 IPR007048 GpW/Gp25/anti-adapter protein IraD YPA_1256 IPR006531 Gp5 N-terminal YPA_1256 IPR013046 Bacteriophage Mu/P2, baseplate assembly YPA_1256 IPR037026 YPA_1256 YPA_1257 IPR007460 Burkholderia phage Bups phi1, Orf7.3 YPA_1257 IPR038573 YPA_1257 YPA_1258 IPR025528 Protein of unknown function DUF4415 YPA_1259 IPR000157 Toll/interleukin-1 receptor homology (TIR) domain YPA_1259 IPR035897 YPA_1259 YPA_1260 IPR001207 Transposase, mutator type YPA_1261 IPR001207 Transposase, mutator type YPA_1264 IPR001584 Integrase, catalytic core YPA_1266 IPR000524 Transcription regulator HTH, GntR YPA_1266 IPR011663 UbiC transcription regulator-associated YPA_1266 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain YPA_1266 IPR036388 YPA_1266 YPA_1266 IPR036390 YPA_1266 YPA_1268 IPR000683 Oxidoreductase, N-terminal YPA_1268 IPR036291 YPA_1268 YPA_1269 IPR006059 Bacterial extracellular solute-binding, family 1 YPA_1270 IPR000515 MetI-like domain YPA_1270 IPR035906 YPA_1270 YPA_1271 IPR000515 MetI-like domain YPA_1271 IPR035906 YPA_1271 YPA_1272 IPR003439 ABC transporter-like YPA_1272 IPR003593 AAA+ ATPase domain YPA_1272 IPR017871 ABC transporter, conserved site YPA_1272 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPA_1273 IPR008995 Molybdate/tungstate binding, C-terminal YPA_1273 IPR013611 Transport-associated OB, type 2 YPA_1275 IPR001584 Integrase, catalytic core YPA_1275 IPR006120 Resolvase, HTH domain YPA_1275 IPR009057 Homeodomain-like YPA_1275 IPR012337 Ribonuclease H-like domain YPA_1276 IPR001270 ClpA/B family YPA_1276 IPR002611 IstB-like ATP-binding protein YPA_1276 IPR003593 AAA+ ATPase domain YPA_1276 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPA_1276 IPR028350 DNA replication protein DnaC/insertion sequence putative ATP-binding protein YPA_1277 IPR007985 Haemolysin expression modulating, HHA YPA_1277 IPR036666 YPA_1277 YPA_1278 IPR000962 Zinc finger, DksA/TraR C4-type YPA_1278 IPR012783 Zinc finger, C4 DksA/TraR-type YPA_1279 IPR021364 Protein of unknown function DUF2857 YPA_1281 IPR010260 Bacteriophage P4, Orf88 YPA_1284 IPR000531 TonB-dependent receptor, beta-barrel YPA_1284 IPR010105 TonB-dependent siderophore receptor YPA_1284 IPR012910 TonB-dependent receptor, plug YPA_1284 IPR036942 YPA_1284 YPA_1285 IPR000873 AMP-dependent synthetase/ligase YPA_1285 IPR020845 AMP-binding, conserved site YPA_1285 IPR025110 AMP-binding enzyme C-terminal domain YPA_1286 IPR001031 Thioesterase YPA_1286 IPR029058 Alpha/Beta hydrolase fold YPA_1287 IPR000683 Oxidoreductase, N-terminal YPA_1287 IPR010091 Thiazolinyl imide reductase YPA_1287 IPR036291 YPA_1287 YPA_1288 IPR001031 Thioesterase YPA_1288 IPR001227 Acyl transferase domain YPA_1288 IPR001242 Condensation domain YPA_1288 IPR006162 Phosphopantetheine attachment site YPA_1288 IPR009081 Acyl carrier protein-like YPA_1288 IPR013217 Methyltransferase type 12 YPA_1288 IPR013968 Polyketide synthase, KR YPA_1288 IPR014030 Beta-ketoacyl synthase, N-terminal YPA_1288 IPR014031 Beta-ketoacyl synthase, C-terminal YPA_1288 IPR014043 Acyl transferase YPA_1288 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase YPA_1288 IPR016036 Malonyl-CoA ACP transacylase, ACP-binding YPA_1288 IPR016039 Thiolase-like YPA_1288 IPR018201 Beta-ketoacyl synthase, active site YPA_1288 IPR020801 Polyketide synthase, acyl transferase domain YPA_1288 IPR020802 Polyketide synthase, thioesterase domain YPA_1288 IPR020806 Polyketide synthase, phosphopantetheine-binding domain YPA_1288 IPR020841 Polyketide synthase, beta-ketoacyl synthase domain YPA_1288 IPR023213 Chloramphenicol acetyltransferase-like domain YPA_1288 IPR029058 Alpha/Beta hydrolase fold YPA_1288 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase-like YPA_1288 IPR032821 YPA_1288 YPA_1288 IPR036291 YPA_1288 YPA_1288 IPR036736 YPA_1288 YPA_1289 IPR000873 AMP-dependent synthetase/ligase YPA_1289 IPR001242 Condensation domain YPA_1289 IPR006162 Phosphopantetheine attachment site YPA_1289 IPR009081 Acyl carrier protein-like YPA_1289 IPR010071 Amino acid adenylation domain YPA_1289 IPR013217 Methyltransferase type 12 YPA_1289 IPR020806 Polyketide synthase, phosphopantetheine-binding domain YPA_1289 IPR020845 AMP-binding, conserved site YPA_1289 IPR023213 Chloramphenicol acetyltransferase-like domain YPA_1289 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase-like YPA_1289 IPR036736 YPA_1289 YPA_1290 IPR009057 Homeodomain-like YPA_1290 IPR018060 DNA binding HTH domain, AraC-type YPA_1290 IPR018062 HTH domain AraC-type, conserved site YPA_1290 IPR020449 Transcription regulator HTH, AraC- type YPA_1291 IPR003439 ABC transporter-like YPA_1291 IPR003593 AAA+ ATPase domain YPA_1291 IPR011527 ABC transporter type 1, transmembrane domain YPA_1291 IPR017871 ABC transporter, conserved site YPA_1291 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPA_1291 IPR036640 YPA_1291 YPA_1292 IPR003439 ABC transporter-like YPA_1292 IPR003593 AAA+ ATPase domain YPA_1292 IPR011527 ABC transporter type 1, transmembrane domain YPA_1292 IPR017871 ABC transporter, conserved site YPA_1292 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPA_1292 IPR036640 YPA_1292 YPA_1293 IPR011701 Major facilitator superfamily YPA_1293 IPR036259 YPA_1293 YPA_1294 IPR005801 ADC synthase YPA_1294 IPR015890 Chorismate binding, C-terminal YPA_1294 IPR019996 Salicylate synthase YPA_1295 IPR002104 Integrase, catalytic YPA_1295 IPR010998 Integrase, Lambda-type, N-terminal YPA_1295 IPR011010 DNA breaking-rejoining enzyme, catalytic core YPA_1295 IPR013762 Integrase-like, catalytic core YPA_1295 IPR025166 Domain of unknown function DUF4102 YPA_1295 IPR038488 YPA_1295 YPA_1296 IPR001829 Pili assembly chaperone, bacterial YPA_1296 IPR008962 PapD-like YPA_1296 IPR013783 Immunoglobulin-like fold YPA_1296 IPR016147 PapD, N-terminal, bacterial YPA_1296 IPR016148 Pili assembly chaperone, C-terminal domain YPA_1296 IPR018046 Pili assembly chaperone, conserved site YPA_1296 IPR036316 YPA_1296 YPA_1297 IPR000259 Fimbrial-type adhesion domain YPA_1297 IPR008966 Adhesion domain YPA_1297 IPR011228 Uncharacterised conserved protein UCP029766 YPA_1298 IPR000015 Outer membrane usher protein YPA_1298 IPR025885 PapC, N-terminal domain YPA_1298 IPR025949 PapC-like, C-terminal domain YPA_1298 IPR037224 YPA_1298 YPA_1299 IPR001829 Pili assembly chaperone, bacterial YPA_1299 IPR008962 PapD-like YPA_1299 IPR013783 Immunoglobulin-like fold YPA_1299 IPR016147 PapD, N-terminal, bacterial YPA_1299 IPR016148 Pili assembly chaperone, C-terminal domain YPA_1299 IPR036316 YPA_1299 YPA_1300 IPR000259 Fimbrial-type adhesion domain YPA_1300 IPR008966 Adhesion domain YPA_1300 IPR036937 YPA_1300 YPA_1302 IPR001638 Extracellular solute-binding protein, family 3 YPA_1302 IPR001789 Signal transduction response regulator, receiver domain YPA_1302 IPR003594 Histidine kinase-like ATPase, C-terminal domain YPA_1302 IPR003661 Signal transduction histidine kinase EnvZ-like, dimerisation/phosphoacceptor domain YPA_1302 IPR004358 Signal transduction histidine kinase-related protein, C-terminal YPA_1302 IPR011006 CheY-like superfamily YPA_1302 IPR036097 YPA_1302 YPA_1302 IPR036890 YPA_1302 YPA_1303 IPR000792 Transcription regulator LuxR, C-terminal YPA_1303 IPR001789 Signal transduction response regulator, receiver domain YPA_1303 IPR011006 CheY-like superfamily YPA_1303 IPR016032 Signal transduction response regulator, C-terminal effector YPA_1304 IPR003702 Acetyl-CoA hydrolase/transferase YPA_1304 IPR026888 Acetyl-CoA hydrolase/transferase C-terminal domain YPA_1304 IPR037171 YPA_1304 YPA_1304 IPR038460 YPA_1304 YPA_1305 IPR002539 MaoC-like domain YPA_1305 IPR029069 HotDog domain YPA_1306 IPR005000 HpcH/HpaI aldolase/citrate lyase domain YPA_1306 IPR011206 Citrate lyase beta subunit-like YPA_1306 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain YPA_1307 IPR000847 Transcription regulator HTH, LysR YPA_1307 IPR005119 LysR, substrate-binding YPA_1307 IPR036388 YPA_1307 YPA_1307 IPR036390 YPA_1307 YPA_1308 IPR013783 Immunoglobulin-like fold YPA_1310 IPR011701 Major facilitator superfamily YPA_1310 IPR036259 YPA_1310 YPA_1311 IPR002611 IstB-like ATP-binding protein YPA_1311 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPA_1313 IPR001584 Integrase, catalytic core YPA_1313 IPR006120 Resolvase, HTH domain YPA_1313 IPR009057 Homeodomain-like YPA_1313 IPR012337 Ribonuclease H-like domain YPA_1314 IPR005829 Sugar transporter, conserved site YPA_1314 IPR011701 Major facilitator superfamily YPA_1314 IPR036259 YPA_1314 YPA_1315 IPR006680 Amidohydrolase 1 YPA_1315 IPR032466 YPA_1315 YPA_1316 IPR000847 Transcription regulator HTH, LysR YPA_1316 IPR005119 LysR, substrate-binding YPA_1316 IPR036388 YPA_1316 YPA_1316 IPR036390 YPA_1316 YPA_1317 IPR003667 Electron transport complex, Rnf/Nqr YPA_1317 IPR010967 NADH:ubiquinone oxidoreductase, Na(+)-translocating, E subunit YPA_1318 IPR004839 Aminotransferase, class I/classII YPA_1318 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 YPA_1318 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 YPA_1318 IPR015424 Pyridoxal phosphate-dependent transferase YPA_1319 IPR002293 Amino acid/polyamine transporter I YPA_1319 IPR004840 Amino acid permease, conserved site YPA_1319 IPR004841 Amino acid permease/ SLC12A domain YPA_1320 IPR001034 HTH DeoR N-terminal domain YPA_1320 IPR014036 DeoR C-terminal sensor domain YPA_1320 IPR018356 Transcription regulator, HTH DeoR-type, conserved site YPA_1320 IPR036388 YPA_1320 YPA_1320 IPR036390 YPA_1320 YPA_1320 IPR037171 YPA_1320 YPA_1322 IPR012338 Beta-lactamase/transpeptidase-like YPA_1322 IPR015868 Glutaminase YPA_1323 IPR011701 Major facilitator superfamily YPA_1323 IPR036259 YPA_1323 YPA_1324 IPR004923 Iron permease FTR1/Fip1/EfeU YPA_1325 IPR018470 Periplasmic metal-binding protein Tp34-type YPA_1325 IPR038482 YPA_1325 YPA_1326 IPR007029 YHS domain YPA_1326 IPR018758 Domain of unknown function DUF2318, membrane YPA_1327 IPR003838 Permease FtsX-like YPA_1328 IPR003838 Permease FtsX-like YPA_1328 IPR025857 MacB-like periplasmic core domain YPA_1329 IPR003439 ABC transporter-like YPA_1329 IPR003593 AAA+ ATPase domain YPA_1329 IPR017871 ABC transporter, conserved site YPA_1329 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPA_1330 IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant YPA_1330 IPR036249 YPA_1330 YPA_1331 IPR009056 Cytochrome c-like domain YPA_1331 IPR036909 YPA_1331 YPA_1332 IPR004537 Tellurite resistance methyltransferase, TehB YPA_1332 IPR014431 Tellurite resistance methyltransferase, TehB type-2 YPA_1332 IPR014710 RmlC-like jelly roll fold YPA_1332 IPR015392 Domain of unknown function DUF1971 YPA_1332 IPR015985 Tellurite resistance methyltransferase TehB-like domain YPA_1332 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase-like YPA_1333 IPR000587 Creatinase, N-terminal YPA_1333 IPR000994 Peptidase M24, structural domain YPA_1333 IPR029149 Creatinase/Aminopeptidase P/Spt16, N-terminal YPA_1333 IPR036005 YPA_1333 YPA_1334 IPR011990 Tetratricopeptide-like helical domain YPA_1334 IPR023870 Poly-beta-1,6 N-acetyl-D-glucosamine export porin PgaA YPA_1335 IPR002509 Polysaccharide deacetylase YPA_1335 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel YPA_1335 IPR023854 Poly-beta-1,6-N-acetyl-D-glucosamine N-deacetylase PgaB YPA_1335 IPR032772 YPA_1335 YPA_1336 IPR001173 Glycosyltransferase 2-like YPA_1336 IPR023853 Poly-beta-1,6 N-acetyl-D-glucosamine synthase PgaC/IcaA YPA_1336 IPR029044 Nucleotide-diphospho-sugar transferases YPA_1337 IPR023829 Poly-beta-1,6-N-acetyl-D-glucosamine biosynthesis protein PgaD YPA_1338 IPR000182 GNAT domain YPA_1338 IPR016181 Acyl-CoA N-acyltransferase YPA_1340 IPR003714 PhoH-like protein YPA_1340 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPA_1341 IPR004713 Calcium/proton exchanger YPA_1341 IPR004837 Sodium/calcium exchanger membrane region YPA_1342 IPR003594 Histidine kinase-like ATPase, C-terminal domain YPA_1342 IPR003660 HAMP linker domain YPA_1342 IPR011712 Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain YPA_1342 IPR016380 Signal transduction histidine kinase, nitrate/nitrite-sensing YPA_1342 IPR029095 NarX-like, N-terminal YPA_1342 IPR036890 YPA_1342 YPA_1343 IPR000524 Transcription regulator HTH, GntR YPA_1343 IPR004839 Aminotransferase, class I/classII YPA_1343 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 YPA_1343 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 YPA_1343 IPR015424 Pyridoxal phosphate-dependent transferase YPA_1343 IPR036388 YPA_1343 YPA_1343 IPR036390 YPA_1343 YPA_1344 IPR004636 Acetylornithine/Succinylornithine transaminase family YPA_1344 IPR005814 Aminotransferase class-III YPA_1344 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 YPA_1344 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 YPA_1344 IPR015424 Pyridoxal phosphate-dependent transferase YPA_1344 IPR017652 Acetyl/Succinylornithine transaminase family, bacteria YPA_1344 IPR026330 Succinylornithine transaminase YPA_1345 IPR007041 Arginine N-succinyltransferase Ast/AOST YPA_1345 IPR016181 Acyl-CoA N-acyltransferase YPA_1345 IPR017650 Arginine N-succinyltransferase AstA YPA_1346 IPR015590 Aldehyde dehydrogenase domain YPA_1346 IPR016160 Aldehyde dehydrogenase, cysteine active site YPA_1346 IPR016161 Aldehyde/histidinol dehydrogenase YPA_1346 IPR016162 Aldehyde dehydrogenase, N-terminal YPA_1346 IPR016163 Aldehyde dehydrogenase, C-terminal YPA_1346 IPR017649 Succinylglutamic semialdehyde dehydrogenase YPA_1346 IPR029510 Aldehyde dehydrogenase, glutamic acid active site YPA_1347 IPR007079 Succinylarginine dihydrolase YPA_1347 IPR037031 YPA_1347 YPA_1348 IPR007036 Succinylglutamate desuccinylase/aspartoacylase YPA_1348 IPR016681 Succinylglutamate desuccinylase YPA_1349 IPR001702 Porin, Gram-negative type YPA_1349 IPR001897 Porin, gammaproteobacterial YPA_1349 IPR023614 Porin domain YPA_1350 IPR001584 Integrase, catalytic core YPA_1350 IPR006120 Resolvase, HTH domain YPA_1350 IPR009057 Homeodomain-like YPA_1350 IPR012337 Ribonuclease H-like domain YPA_1351 IPR001270 ClpA/B family YPA_1351 IPR002611 IstB-like ATP-binding protein YPA_1351 IPR003593 AAA+ ATPase domain YPA_1351 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPA_1351 IPR028350 DNA replication protein DnaC/insertion sequence putative ATP-binding protein YPA_1352 IPR001702 Porin, Gram-negative type YPA_1352 IPR023614 Porin domain YPA_1353 IPR007709 N-formylglutamate amidohydrolase YPA_1353 IPR010247 N-formylglutamate deformylase YPA_1354 IPR005920 Imidazolonepropionase YPA_1354 IPR006680 Amidohydrolase 1 YPA_1354 IPR011059 Metal-dependent hydrolase, composite domain YPA_1354 IPR032466 YPA_1354 YPA_1355 IPR000524 Transcription regulator HTH, GntR YPA_1355 IPR010248 Histidine utilization repressor YPA_1355 IPR011663 UbiC transcription regulator-associated YPA_1355 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain YPA_1355 IPR036388 YPA_1355 YPA_1355 IPR036390 YPA_1355 YPA_1356 IPR006680 Amidohydrolase 1 YPA_1356 IPR010252 Formiminoglutamate deiminase YPA_1356 IPR011059 Metal-dependent hydrolase, composite domain YPA_1356 IPR032466 YPA_1356 YPA_1357 IPR010282 Uncharacterised protein family HutD/Ves YPA_1357 IPR011051 RmlC-like cupin domain YPA_1357 IPR014710 RmlC-like jelly roll fold YPA_1358 IPR005801 ADC synthase YPA_1358 IPR015890 Chorismate binding, C-terminal YPA_1359 IPR013751 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III YPA_1359 IPR016039 Thiolase-like YPA_1360 IPR013747 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C-terminal YPA_1360 IPR016039 Thiolase-like YPA_1361 IPR001509 NAD-dependent epimerase/dehydratase, N-terminal domain YPA_1361 IPR036291 YPA_1361 YPA_1362 IPR001279 Beta-lactamase-like YPA_1362 IPR036866 YPA_1362 YPA_1363 IPR012685 Conserved hypothetical protein CHP02304, F390 synthetase-related YPA_1364 IPR001509 NAD-dependent epimerase/dehydratase, N-terminal domain YPA_1364 IPR036291 YPA_1364 YPA_1365 IPR025993 Ceramide glucosyltransferase YPA_1365 IPR029044 Nucleotide-diphospho-sugar transferases YPA_1367 IPR007235 Glycosyl transferase, family 28, C-terminal YPA_1370 IPR001207 Transposase, mutator type YPA_1371 IPR006597 Sel1-like YPA_1371 IPR011652 MORN variant YPA_1371 IPR011990 Tetratricopeptide-like helical domain YPA_1372 IPR006597 Sel1-like YPA_1372 IPR025115 Domain of unknown function DUF4034 YPA_1373 IPR003500 Sugar-phosphate isomerase, RpiB/LacA/LacB family YPA_1373 IPR022133 Ribose-5-phosphate isomerase, C-terminal YPA_1373 IPR036569 YPA_1373 YPA_1374 IPR013217 Methyltransferase type 12 YPA_1374 IPR016584 S-adenosyl-L-methionine dependent methyltransferase, YbcY, predicted YPA_1374 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase-like YPA_1375 IPR002347 Glucose/ribitol dehydrogenase YPA_1375 IPR020904 Short-chain dehydrogenase/reductase, conserved site YPA_1375 IPR036291 YPA_1375 YPA_1376 IPR011051 RmlC-like cupin domain YPA_1377 IPR011051 RmlC-like cupin domain YPA_1378 IPR011989 Armadillo-like helical YPA_1378 IPR016024 Armadillo-type fold YPA_1379 IPR000073 Alpha/beta hydrolase fold-1 YPA_1379 IPR029058 Alpha/Beta hydrolase fold YPA_1380 IPR011051 RmlC-like cupin domain YPA_1380 IPR013096 Cupin 2, conserved barrel YPA_1380 IPR014710 RmlC-like jelly roll fold YPA_1381 IPR003779 Carboxymuconolactone decarboxylase-like YPA_1381 IPR029032 AhpD-like YPA_1382 IPR003594 Histidine kinase-like ATPase, C-terminal domain YPA_1382 IPR003660 HAMP linker domain YPA_1382 IPR003661 Signal transduction histidine kinase EnvZ-like, dimerisation/phosphoacceptor domain YPA_1382 IPR006290 Heavy metal sensor kinase YPA_1382 IPR036097 YPA_1382 YPA_1382 IPR036890 YPA_1382 YPA_1383 IPR001789 Signal transduction response regulator, receiver domain YPA_1383 IPR001867 Signal transduction response regulator, C-terminal YPA_1383 IPR006291 Transcriptional regulatory protein PcoR, heavy metal response YPA_1383 IPR011006 CheY-like superfamily YPA_1383 IPR016032 Signal transduction response regulator, C-terminal effector YPA_1383 IPR036388 YPA_1383 YPA_1384 IPR002925 Dienelactone hydrolase YPA_1384 IPR029058 Alpha/Beta hydrolase fold YPA_1385 IPR008254 Flavodoxin/nitric oxide synthase YPA_1385 IPR029039 Flavoprotein-like YPA_1386 IPR016174 Di-haem cytochrome, transmembrane YPA_1386 IPR025517 Domain of unknown function DUF4405 YPA_1387 IPR025145 Protein of unknown function DUF4087 YPA_1388 IPR028082 Periplasmic binding protein-like I YPA_1389 IPR013094 Alpha/beta hydrolase fold-3 YPA_1389 IPR029058 Alpha/Beta hydrolase fold YPA_1390 IPR001763 Rhodanese-like domain YPA_1390 IPR036873 YPA_1390 YPA_1391 IPR001584 Integrase, catalytic core YPA_1391 IPR012337 Ribonuclease H-like domain YPA_1391 IPR036397 YPA_1391 YPA_1392 IPR009057 Homeodomain-like YPA_1393 IPR004396 Ribosome-binding ATPase YchF/Obg-like ATPase 1 YPA_1393 IPR006073 GTP binding domain YPA_1393 IPR012675 Beta-grasp domain YPA_1393 IPR012676 TGS-like YPA_1393 IPR013029 Domain of unknown function DUF933 YPA_1393 IPR023192 TGS-like domain YPA_1393 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPA_1394 IPR001328 Peptidyl-tRNA hydrolase YPA_1394 IPR018171 Peptidyl-tRNA hydrolase, conserved site YPA_1394 IPR036416 YPA_1394 YPA_1395 IPR019698 Protein of unknown function DUF2583 YPA_1396 IPR000842 Phosphoribosyl pyrophosphate synthetase, conserved site YPA_1396 IPR005946 Ribose-phosphate diphosphokinase YPA_1396 IPR029057 Phosphoribosyltransferase-like YPA_1396 IPR029099 Ribose-phosphate pyrophosphokinase, N-terminal domain YPA_1396 IPR037515 YPA_1396 YPA_1398 IPR004424 4-diphosphocytidyl-2C-methyl-D-erythritol kinase YPA_1398 IPR006204 GHMP kinase N-terminal domain YPA_1398 IPR013750 GHMP kinase, C-terminal domain YPA_1398 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup YPA_1398 IPR020568 Ribosomal protein S5 domain 2-type fold YPA_1398 IPR036554 YPA_1398 YPA_1399 IPR004565 Outer membrane lipoprotein LolB YPA_1399 IPR029046 Lipoprotein localisation LolA/LolB/LppX YPA_1400 IPR000343 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase YPA_1400 IPR006151 Quinate/shikimate 5-dehydrogenase/glutamyl-tRNA reductase YPA_1400 IPR015895 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase, N-terminal YPA_1400 IPR015896 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase, dimerisation domain YPA_1400 IPR018214 Glutamyl-tRNA reductase, conserved site YPA_1400 IPR036291 YPA_1400 YPA_1400 IPR036343 YPA_1400 YPA_1400 IPR036453 YPA_1400 YPA_1401 IPR000352 Peptide chain release factor class I/class II YPA_1401 IPR004373 Peptide chain release factor 1 YPA_1401 IPR005139 Peptide chain release factor YPA_1402 IPR002052 DNA methylase, N-6 adenine-specific, conserved site YPA_1402 IPR004556 Modification methylase HemK YPA_1402 IPR019874 Protein-(glutamine-N5) methyltransferase, release factor-specific YPA_1402 IPR025714 Methyltransferase domain YPA_1402 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase-like YPA_1403 IPR007360 Invasion gene expression up-regulator, SirB YPA_1404 IPR011990 Tetratricopeptide-like helical domain YPA_1404 IPR032698 YPA_1404 YPA_1405 IPR006218 DAHP synthetase I/KDSA YPA_1405 IPR006269 3-deoxy-8-phosphooctulonate synthase YPA_1405 IPR013785 Aldolase-type TIM barrel YPA_1406 IPR036513 YPA_1406 YPA_1407 IPR001270 ClpA/B family YPA_1407 IPR002611 IstB-like ATP-binding protein YPA_1407 IPR003593 AAA+ ATPase domain YPA_1407 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPA_1407 IPR028350 DNA replication protein DnaC/insertion sequence putative ATP-binding protein YPA_1408 IPR001584 Integrase, catalytic core YPA_1408 IPR006120 Resolvase, HTH domain YPA_1408 IPR009057 Homeodomain-like YPA_1408 IPR012337 Ribonuclease H-like domain YPA_1409 IPR001902 Sulphate anion transporter YPA_1409 IPR011547 Sulphate transporter YPA_1409 IPR018045 Sulphate anion transporter, conserved site YPA_1410 IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain YPA_1410 IPR030395 YPA_1410 YPA_1411 IPR006059 Bacterial extracellular solute-binding, family 1 YPA_1412 IPR000515 MetI-like domain YPA_1412 IPR035906 YPA_1412 YPA_1413 IPR000515 MetI-like domain YPA_1413 IPR035906 YPA_1413 YPA_1414 IPR003439 ABC transporter-like YPA_1414 IPR017871 ABC transporter, conserved site YPA_1414 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPA_1415 IPR002686 Transposase IS200-like YPA_1415 IPR036515 YPA_1415 YPA_1416 IPR003439 ABC transporter-like YPA_1416 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPA_1417 IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain YPA_1417 IPR030395 YPA_1417 YPA_1418 IPR000600 ROK YPA_1418 IPR036388 YPA_1418 YPA_1418 IPR036390 YPA_1418 YPA_1419 IPR003141 Polymerase/histidinol phosphatase, N-terminal YPA_1419 IPR004013 PHP, C-terminal YPA_1419 IPR016195 Polymerase/histidinol phosphatase-like YPA_1419 IPR023710 Probable phosphatase YcdX YPA_1420 IPR020945 DMSO/Nitrate reductase chaperone YPA_1420 IPR026269 Tat proofreading chaperone DmsD-type YPA_1420 IPR036411 YPA_1420 YPA_1421 IPR010835 Protein of unknown function DUF1439 YPA_1422 IPR011701 Major facilitator superfamily YPA_1422 IPR022855 Multidrug resistance protein MdtH YPA_1422 IPR036259 YPA_1422 YPA_1423 IPR000182 GNAT domain YPA_1423 IPR016181 Acyl-CoA N-acyltransferase YPA_1424 IPR000683 Oxidoreductase, N-terminal YPA_1424 IPR007432 Protein of unknown function DUF480 YPA_1424 IPR036291 YPA_1424 YPA_1424 IPR036388 YPA_1424 YPA_1424 IPR036390 YPA_1424 YPA_1425 IPR004268 Flagellin assembly, membrane protein MviN YPA_1426 IPR005565 Haemolysin activator HlyB YPA_1426 IPR013686 Polypeptide-transport-associated, ShlB-type YPA_1426 IPR027282 Two partner secretion pathway transporter YPA_1426 IPR035251 YPA_1426 YPA_1427 IPR008638 Filamentous haemagglutinin, N-terminal YPA_1427 IPR011050 Pectin lyase fold/virulence factor YPA_1427 IPR012334 Pectin lyase fold YPA_1427 IPR025157 Haemagluttinin repeat YPA_1428 IPR001278 Arginine-tRNA ligase YPA_1428 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site YPA_1428 IPR005148 Arginyl tRNA synthetase N-terminal domain YPA_1428 IPR008909 DALR anticodon binding YPA_1428 IPR009080 Aminoacyl-tRNA synthetase, class 1a, anticodon-binding YPA_1428 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold YPA_1428 IPR035684 YPA_1428 YPA_1428 IPR036695 YPA_1428 YPA_1429 IPR010393 Protein of unknown function DUF991 YPA_1429 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase YPA_1430 IPR005627 Copper homeostasis protein CutC YPA_1430 IPR023648 Copper homeostasis CutC domain YPA_1430 IPR036822 YPA_1430 YPA_1431 IPR010017 tRNA (mo5U34)-methyltransferase YPA_1431 IPR027555 tRNA (mo5U34)-methyltransferase-like YPA_1431 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase-like YPA_1432 IPR005271 tRNA (cmo5U34)-methyltransferase YPA_1432 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase-like YPA_1433 IPR001129 Membrane-associated, eicosanoid/glutathione metabolism (MAPEG) protein YPA_1433 IPR023352 Membrane associated eicosanoid/glutathione metabolism-like domain YPA_1434 IPR002763 Protein of unknown function DUF72 YPA_1434 IPR036520 YPA_1434 YPA_1435 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb YPA_1435 IPR004115 GAD-like domain YPA_1435 IPR004364 Aminoacyl-tRNA synthetase, class II (D/K/N) YPA_1435 IPR004365 OB-fold nucleic acid binding domain, AA-tRNA synthetase-type YPA_1435 IPR004524 Aspartate-tRNA ligase, class IIb, bacterial/mitochondrial-type YPA_1435 IPR012340 Nucleic acid-binding, OB-fold YPA_1435 IPR029351 GAD domain YPA_1436 IPR000086 NUDIX hydrolase domain YPA_1436 IPR003564 dATP pyrophosphohydrolase YPA_1436 IPR015797 NUDIX hydrolase domain-like YPA_1436 IPR020084 NUDIX hydrolase, conserved site YPA_1437 IPR002876 Transcriptional regulator TACO1-like YPA_1437 IPR017856 Integrase, N-terminal zinc-binding domain-like YPA_1437 IPR026564 Transcriptional regulator TACO1-like, domain 3 YPA_1437 IPR029072 YebC-like YPA_1438 IPR002176 Crossover junction endodeoxyribonuclease RuvC YPA_1438 IPR012337 Ribonuclease H-like domain YPA_1438 IPR020563 Crossover junction endodeoxyribonuclease RuvC, magnesium-binding site YPA_1438 IPR036397 YPA_1438 YPA_1439 IPR002686 Transposase IS200-like YPA_1439 IPR036515 YPA_1439 YPA_1440 IPR000085 Bacterial DNA recombination protein RuvA YPA_1440 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 YPA_1440 IPR010994 RuvA domain 2-like YPA_1440 IPR011114 DNA helicase, Holliday junction RuvA type, domain III, C-terminal YPA_1440 IPR012340 Nucleic acid-binding, OB-fold YPA_1440 IPR013849 DNA helicase, Holliday junction RuvA type, domain I, bacterial YPA_1440 IPR036267 YPA_1440 YPA_1441 IPR003593 AAA+ ATPase domain YPA_1441 IPR004605 DNA helicase, Holliday junction RuvB type YPA_1441 IPR008823 DNA helicase, Holliday junction RuvB type, C-terminal YPA_1441 IPR008824 DNA helicase, Holliday junction RuvB type, N-terminal YPA_1441 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPA_1441 IPR036388 YPA_1441 YPA_1441 IPR036390 YPA_1441 YPA_1442 IPR001626 ABC-3 YPA_1442 IPR037294 YPA_1442 YPA_1443 IPR003439 ABC transporter-like YPA_1443 IPR003593 AAA+ ATPase domain YPA_1443 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPA_1444 IPR006127 Periplasmic solute binding protein family YPA_1445 IPR007340 Opacity-associated protein A YPA_1445 IPR011055 Duplicated hybrid motif YPA_1445 IPR013731 Opacity-associated protein A, N-terminal YPA_1445 IPR016047 Peptidase M23 YPA_1445 IPR018392 LysM domain YPA_1446 IPR004960 Bacterial lipid A biosynthesis acyltransferase YPA_1446 IPR011921 Lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase YPA_1447 IPR001697 Pyruvate kinase YPA_1447 IPR011037 Pyruvate kinase-like, insert domain YPA_1447 IPR015793 Pyruvate kinase, barrel YPA_1447 IPR015795 Pyruvate kinase, C-terminal YPA_1447 IPR015806 Pyruvate kinase, beta-barrel insert domain YPA_1447 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain YPA_1447 IPR018209 Pyruvate kinase, active site YPA_1447 IPR036918 YPA_1447 YPA_1448 IPR000281 Helix-turn-helix protein RpiR YPA_1448 IPR001347 Sugar isomerase (SIS) YPA_1448 IPR009057 Homeodomain-like YPA_1448 IPR036388 YPA_1448 YPA_1449 IPR001282 Glucose-6-phosphate dehydrogenase YPA_1449 IPR019796 Glucose-6-phosphate dehydrogenase, active site YPA_1449 IPR022674 Glucose-6-phosphate dehydrogenase, NAD-binding YPA_1449 IPR022675 Glucose-6-phosphate dehydrogenase, C-terminal YPA_1449 IPR036291 YPA_1449 YPA_1450 IPR000887 KDPG/KHG aldolase YPA_1450 IPR013785 Aldolase-type TIM barrel YPA_1450 IPR031337 YPA_1450 YPA_1450 IPR031338 YPA_1450 YPA_1451 IPR000390 Small multidrug resistance protein family YPA_1451 IPR023740 Spermidine export protein MdtJ YPA_1452 IPR000390 Small multidrug resistance protein family YPA_1452 IPR023737 Spermidine export protein MdtI YPA_1453 IPR006175 YjgF/Yer057p/UK114 family YPA_1453 IPR019897 YjgF-like protein, conserved site YPA_1453 IPR035959 YPA_1453 YPA_1454 IPR006555 ATP-dependent helicase, C-terminal YPA_1454 IPR010614 DEAD2 YPA_1454 IPR014001 Helicase, superfamily 1/2, ATP-binding domain YPA_1454 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPA_1455 IPR000905 Gcp-like domain YPA_1455 IPR022496 tRNA threonylcarbamoyl adenosine modification protein YeaZ YPA_1456 IPR004658 Outer membrane lipoprotein Slp YPA_1457 IPR000873 AMP-dependent synthetase/ligase YPA_1457 IPR020845 AMP-binding, conserved site YPA_1457 IPR025110 AMP-binding enzyme C-terminal domain YPA_1458 IPR002121 HRDC domain YPA_1458 IPR002562 3'-5' exonuclease domain YPA_1458 IPR006292 Ribonuclease D YPA_1458 IPR010997 HRDC-like YPA_1458 IPR012337 Ribonuclease H-like domain YPA_1458 IPR036397 YPA_1458 YPA_1459 IPR005527 Septum formation topological specificity factor MinE YPA_1459 IPR036707 YPA_1459 YPA_1460 IPR002586 CobQ/CobB/MinD/ParA nucleotide binding domain YPA_1460 IPR010223 ATP binding protein MinD, bacterial-type YPA_1460 IPR025501 ATP binding protein MinD YPA_1460 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPA_1461 IPR005526 Septum formation inhibitor MinC, C-terminal YPA_1461 IPR007874 Septum formation inhibitor MinC, N-terminal YPA_1461 IPR013033 Septum formation inhibitor MinC YPA_1461 IPR016098 Cyclase-associated protein CAP/septum formation inhibitor MinC, C-terminal YPA_1461 IPR036145 YPA_1461 YPA_1461 IPR038061 YPA_1461 YPA_1462 IPR027354 YcgL domain YPA_1462 IPR038068 YPA_1462 YPA_1463 IPR011970 Lytic murein transglycosylase YPA_1463 IPR023346 Lysozyme-like domain YPA_1463 IPR031304 YPA_1463 YPA_1464 IPR011234 Fumarylacetoacetase, C-terminal-related YPA_1464 IPR036663 YPA_1464 YPA_1465 IPR005358 Putative zinc- or iron-chelating domain containing protein YPA_1465 IPR008228 Uncharacterised conserved protein UCP006173 YPA_1466 IPR002104 Integrase, catalytic YPA_1466 IPR010998 Integrase, Lambda-type, N-terminal YPA_1466 IPR011010 DNA breaking-rejoining enzyme, catalytic core YPA_1466 IPR013762 Integrase-like, catalytic core YPA_1466 IPR022000 Domain of unknown function (DUF3596) YPA_1467 IPR001584 Integrase, catalytic core YPA_1467 IPR006120 Resolvase, HTH domain YPA_1467 IPR009057 Homeodomain-like YPA_1467 IPR012337 Ribonuclease H-like domain YPA_1468 IPR001270 ClpA/B family YPA_1468 IPR002611 IstB-like ATP-binding protein YPA_1468 IPR003593 AAA+ ATPase domain YPA_1468 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPA_1468 IPR028350 DNA replication protein DnaC/insertion sequence putative ATP-binding protein YPA_1470 IPR017029 Putative phage head morphogenesis protein YPA_1472 IPR003343 Bacterial Ig-like, group 2 YPA_1472 IPR008964 Invasin/intimin cell-adhesion YPA_1477 IPR025395 Protein of unknown function DUF4128 YPA_1478 IPR003343 Bacterial Ig-like, group 2 YPA_1478 IPR008964 Invasin/intimin cell-adhesion YPA_1478 IPR014918 Bacteriophage T1, Orf41 YPA_1479 IPR014859 Protein of unknown function DUF1789 YPA_1480 IPR006431 Bacteriophage lambda, GpH, tail tape measure, C-terminal YPA_1480 IPR009628 Bacteriophage lambda, GpH, tail tape measure, N-terminal YPA_1481 IPR010265 Bacteriophage lambda, GpM, minor tail YPA_1482 IPR002686 Transposase IS200-like YPA_1482 IPR036515 YPA_1482 YPA_1483 IPR006487 Bacteriophage lambda, GpL, minor tail YPA_1484 IPR000064 Endopeptidase, NLPC/P60 domain YPA_1484 IPR000555 JAB1/MPN/MOV34 metalloenzyme domain YPA_1484 IPR028090 JAB domain, prokaryotic YPA_1484 IPR038765 YPA_1484 YPA_1486 IPR005569 Arc-like DNA binding YPA_1486 IPR010985 Ribbon-helix-helix YPA_1486 IPR013321 Arc-type ribbon-helix-helix YPA_1487 IPR003497 BRO N-terminal domain YPA_1489 IPR010654 Bacteriophage lambda tail assembly I YPA_1490 IPR003961 Fibronectin, type III YPA_1490 IPR013783 Immunoglobulin-like fold YPA_1490 IPR015406 Domain of unknown function DUF1983 YPA_1490 IPR032876 YPA_1490 YPA_1490 IPR036116 YPA_1490 YPA_1493 IPR003458 Bacteriophage T4, Gp38, tail fibre assembly YPA_1495 IPR001207 Transposase, mutator type YPA_1496 IPR036259 YPA_1496 YPA_1497 IPR036259 YPA_1497 YPA_1498 IPR000192 Aminotransferase class V domain YPA_1498 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 YPA_1498 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 YPA_1498 IPR015424 Pyridoxal phosphate-dependent transferase YPA_1498 IPR016454 Cysteine desulfurase, NifS YPA_1501 IPR003752 Disulphide bond formation protein DsbB/BdbC YPA_1501 IPR022920 Disulphide bond formation protein DsbB YPA_1501 IPR023380 Disulphide bond formation protein DsbB-like domain YPA_1502 IPR004671 Na+/H+ antiporter NhaB YPA_1503 IPR000524 Transcription regulator HTH, GntR YPA_1503 IPR008920 Transcription regulator FadR/GntR, C-terminal YPA_1503 IPR014178 Fatty acid response transcription factor FadR YPA_1503 IPR028374 FadR, C-terminal domain YPA_1503 IPR036388 YPA_1503 YPA_1503 IPR036390 YPA_1503 YPA_1504 IPR007390 Sporulation stage V, protein R YPA_1505 IPR006076 FAD dependent oxidoreductase YPA_1505 IPR023080 D-amino acid dehydrogenase small subunit, DadA YPA_1505 IPR036188 YPA_1505 YPA_1506 IPR001958 Tetracycline resistance protein, TetA/multidrug resistance protein MdtG YPA_1506 IPR004812 Drug resistance transporter Bcr/CmlA subfamily YPA_1506 IPR005829 Sugar transporter, conserved site YPA_1506 IPR011701 Major facilitator superfamily YPA_1506 IPR036259 YPA_1506 YPA_1507 IPR003829 Pirin, N-terminal domain YPA_1507 IPR008778 Pirin, C-terminal domain YPA_1507 IPR011051 RmlC-like cupin domain YPA_1507 IPR012093 Pirin YPA_1507 IPR014710 RmlC-like jelly roll fold YPA_1508 IPR000847 Transcription regulator HTH, LysR YPA_1508 IPR005119 LysR, substrate-binding YPA_1508 IPR036388 YPA_1508 YPA_1508 IPR036390 YPA_1508 YPA_1509 IPR000620 Drug/metabolite transporter YPA_1510 IPR006698 Thermus phage phiYS40, Orf56 YPA_1511 IPR010650 PrkA C-terminal domain YPA_1511 IPR013153 PrkA AAA domain YPA_1511 IPR016230 Serine-protein kinase, PrkA YPA_1511 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPA_1512 IPR010583 MltA-interacting MipA YPA_1513 IPR008183 Aldose 1-/Glucose-6-phosphate 1-epimerase YPA_1513 IPR011013 Galactose mutarotase-like domain YPA_1513 IPR014718 Glycoside hydrolase-type carbohydrate-binding, subgroup YPA_1513 IPR025532 Glucose-6-phosphate 1-epimerase YPA_1514 IPR006424 Glyceraldehyde-3-phosphate dehydrogenase, type I YPA_1514 IPR020828 Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain YPA_1514 IPR020829 Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain YPA_1514 IPR020830 Glyceraldehyde 3-phosphate dehydrogenase, active site YPA_1514 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family YPA_1514 IPR036291 YPA_1514 YPA_1515 IPR002579 Peptide methionine sulphoxide reductase MrsB YPA_1515 IPR011057 Mss4-like YPA_1516 IPR009749 Protein of unknown function DUF1315 YPA_1517 IPR000868 Isochorismatase-like YPA_1517 IPR036380 YPA_1517 YPA_1518 IPR006033 L-asparaginase, type I YPA_1518 IPR006034 Asparaginase/glutaminase YPA_1518 IPR020827 Asparaginase/glutaminase, active site 1 YPA_1518 IPR027473 L-asparaginase, C-terminal domain YPA_1518 IPR027474 L-asparaginase, N-terminal YPA_1518 IPR027475 Asparaginase/glutaminase, active site 2 YPA_1518 IPR036152 YPA_1518 YPA_1518 IPR037152 YPA_1518 YPA_1519 IPR002142 Peptidase S49 YPA_1519 IPR004634 Peptidase S49, protease IV YPA_1519 IPR004635 Peptidase S49, SppA YPA_1519 IPR029045 ClpP/crotonase-like domain YPA_1520 IPR000415 Nitroreductase-like YPA_1520 IPR026021 Putative NAD(P)H nitroreductase YdjA-like YPA_1520 IPR029479 Nitroreductase YPA_1521 IPR004536 Selenide water dikinase YPA_1521 IPR010918 AIR synthase-related protein, C-terminal domain YPA_1521 IPR016188 PurM, N-terminal-like YPA_1521 IPR023061 Selenide, water dikinase, class I YPA_1521 IPR036676 YPA_1521 YPA_1521 IPR036921 YPA_1521 YPA_1522 IPR003601 DNA topoisomerase, type IA, domain 2 YPA_1522 IPR003602 DNA topoisomerase, type IA, DNA-binding domain YPA_1522 IPR005738 DNA topoisomerase III YPA_1522 IPR006171 Toprim domain YPA_1522 IPR013497 DNA topoisomerase, type IA, central YPA_1522 IPR013824 DNA topoisomerase, type IA, central region, subdomain 1 YPA_1522 IPR013825 DNA topoisomerase, type IA, central region, subdomain 2 YPA_1522 IPR013826 DNA topoisomerase, type IA, central region, subdomain 3 YPA_1522 IPR023405 DNA topoisomerase, type IA, core domain YPA_1522 IPR023406 DNA topoisomerase, type IA, active site YPA_1523 IPR009971 Protein of unknown function DUF1496 YPA_1524 IPR000086 NUDIX hydrolase domain YPA_1524 IPR015797 NUDIX hydrolase domain-like YPA_1524 IPR020084 NUDIX hydrolase, conserved site YPA_1524 IPR020476 NUDIX hydrolase YPA_1525 IPR004808 AP endonuclease 1 YPA_1525 IPR005135 Endonuclease/exonuclease/phosphatase YPA_1525 IPR020847 AP endonuclease 1, binding site YPA_1525 IPR020848 AP endonuclease 1, conserved site YPA_1525 IPR036691 YPA_1525 YPA_1526 IPR000847 Transcription regulator HTH, LysR YPA_1526 IPR036388 YPA_1526 YPA_1526 IPR036390 YPA_1526 YPA_1528 IPR001207 Transposase, mutator type YPA_1529 IPR002376 Formyl transferase, N-terminal YPA_1529 IPR002912 ACT domain YPA_1529 IPR004810 Formyltetrahydrofolate deformylase YPA_1529 IPR036477 YPA_1529 YPA_1530 IPR004027 SEC-C motif YPA_1530 IPR023006 Uncharacterised protein family UPF0225 YPA_1530 IPR032710 YPA_1530 YPA_1531 IPR001789 Signal transduction response regulator, receiver domain YPA_1531 IPR011006 CheY-like superfamily YPA_1531 IPR028616 Regulator of RpoS YPA_1531 IPR036457 YPA_1531 YPA_1532 IPR001732 UDP-glucose/GDP-mannose dehydrogenase, N-terminal YPA_1532 IPR008927 6-phosphogluconate dehydrogenase, C-terminal-like YPA_1532 IPR014026 UDP-glucose/GDP-mannose dehydrogenase, dimerisation YPA_1532 IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal YPA_1532 IPR017476 UDP-glucose/GDP-mannose dehydrogenase YPA_1532 IPR028357 UDP-glucose 6-dehydrogenase, bacterial type YPA_1532 IPR036220 YPA_1532 YPA_1532 IPR036291 YPA_1532 YPA_1533 IPR001801 Histone-like protein H-NS YPA_1533 IPR027444 Histone-like protein H-NS, C-terminal domain YPA_1533 IPR027454 Histone-like protein H-NS family, oligomerisation domain YPA_1533 IPR037150 YPA_1533 YPA_1534 IPR001267 Thymidine kinase YPA_1534 IPR020633 Thymidine kinase, conserved site YPA_1534 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPA_1535 IPR001270 ClpA/B family YPA_1535 IPR002611 IstB-like ATP-binding protein YPA_1535 IPR003593 AAA+ ATPase domain YPA_1535 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPA_1535 IPR028350 DNA replication protein DnaC/insertion sequence putative ATP-binding protein YPA_1536 IPR001584 Integrase, catalytic core YPA_1536 IPR006120 Resolvase, HTH domain YPA_1536 IPR009057 Homeodomain-like YPA_1536 IPR012337 Ribonuclease H-like domain YPA_1537 IPR001670 Alcohol dehydrogenase, iron-type YPA_1537 IPR012079 Bifunctional aldehyde-alcohol dehydrogenase YPA_1537 IPR015590 Aldehyde dehydrogenase domain YPA_1537 IPR016161 Aldehyde/histidinol dehydrogenase YPA_1537 IPR016162 Aldehyde dehydrogenase, N-terminal YPA_1537 IPR016163 Aldehyde dehydrogenase, C-terminal YPA_1537 IPR018211 Alcohol dehydrogenase, iron-type, conserved site YPA_1538 IPR002771 Multiple antibiotic resistance (MarC)-related YPA_1539 IPR000914 Bacterial extracellular solute-binding protein, family 5 YPA_1539 IPR023765 Bacterial extracellular solute-binding protein, family 5, conserved site YPA_1539 IPR030678 YPA_1539 YPA_1540 IPR000515 MetI-like domain YPA_1540 IPR035906 YPA_1540 YPA_1541 IPR000515 MetI-like domain YPA_1541 IPR025966 Oligopeptide transport permease C-like, N-terminal domain YPA_1541 IPR035906 YPA_1541 YPA_1542 IPR003439 ABC transporter-like YPA_1542 IPR003593 AAA+ ATPase domain YPA_1542 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal YPA_1542 IPR017871 ABC transporter, conserved site YPA_1542 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPA_1543 IPR003439 ABC transporter-like YPA_1543 IPR003593 AAA+ ATPase domain YPA_1543 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal YPA_1543 IPR017871 ABC transporter, conserved site YPA_1543 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPA_1545 IPR007376 dsDNA mimic, putative YPA_1545 IPR036763 YPA_1545 YPA_1546 IPR001736 Phospholipase D/Transphosphatidylase YPA_1546 IPR022924 Cardiolipin synthase YPA_1546 IPR025202 Phospholipase D-like domain YPA_1546 IPR027379 Cardiolipin synthase N-terminal YPA_1546 IPR030840 YPA_1546 YPA_1547 IPR000758 Virulence-related outer membrane protein YPA_1547 IPR011250 Outer membrane protein/outer membrane enzyme PagP , beta-barrel YPA_1547 IPR027385 Outer membrane protein beta-barrel YPA_1550 IPR027392 Transcription factor zinc-finger YPA_1551 IPR005545 YCII-related YPA_1551 IPR011008 Dimeric alpha-beta barrel YPA_1552 IPR003538 Gram-negative bacterial TonB protein YPA_1552 IPR006260 TonB, C-terminal YPA_1552 IPR037682 YPA_1552 YPA_1553 IPR001207 Transposase, mutator type YPA_1554 IPR006683 Thioesterase superfamily YPA_1554 IPR029069 HotDog domain YPA_1555 IPR006008 Intracellular septation protein A YPA_1556 IPR011547 Sulphate transporter YPA_1557 IPR002645 STAS domain YPA_1557 IPR036513 YPA_1557 YPA_1558 IPR009627 Uncharacterised protein family UPF0259 YPA_1560 IPR000758 Virulence-related outer membrane protein YPA_1560 IPR005618 Outer membrane protein, OmpW YPA_1560 IPR011250 Outer membrane protein/outer membrane enzyme PagP , beta-barrel YPA_1561 IPR007055 BON domain YPA_1561 IPR014004 Transport-associated and nodulation domain, bacteria YPA_1563 IPR002028 Tryptophan synthase, alpha chain YPA_1563 IPR011060 Ribulose-phosphate binding barrel YPA_1563 IPR013785 Aldolase-type TIM barrel YPA_1563 IPR018204 Tryptophan synthase, alpha chain, active site YPA_1564 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme YPA_1564 IPR006653 Tryptophan synthase, beta chain, conserved site YPA_1564 IPR006654 Tryptophan synthase, beta chain YPA_1564 IPR023026 Tryptophan synthase beta chain/beta chain-like YPA_1564 IPR036052 YPA_1564 YPA_1565 IPR001240 N-(5'phosphoribosyl) anthranilate isomerase (PRAI) like domain YPA_1565 IPR001468 Indole-3-glycerol phosphate synthase, conserved site YPA_1565 IPR011060 Ribulose-phosphate binding barrel YPA_1565 IPR013785 Aldolase-type TIM barrel YPA_1565 IPR013798 Indole-3-glycerol phosphate synthase YPA_1566 IPR000312 Glycosyl transferase, family 3 YPA_1566 IPR005940 Anthranilate phosphoribosyl transferase YPA_1566 IPR017459 Glycosyl transferase family 3, N-terminal domain YPA_1566 IPR035902 YPA_1566 YPA_1566 IPR036320 YPA_1566 YPA_1567 IPR006221 Anthranilate synthase/para-aminobenzoate synthase like domain YPA_1567 IPR017926 Glutamine amidotransferase YPA_1567 IPR029062 Class I glutamine amidotransferase-like YPA_1568 IPR005257 Anthranilate synthase component I, TrpE-like, bacterial YPA_1568 IPR005801 ADC synthase YPA_1568 IPR006805 Anthranilate synthase component I, N-terminal YPA_1568 IPR015890 Chorismate binding, C-terminal YPA_1568 IPR019999 Anthranilate synthase component I - like YPA_1569 IPR003141 Polymerase/histidinol phosphatase, N-terminal YPA_1569 IPR004013 PHP, C-terminal YPA_1569 IPR016195 Polymerase/histidinol phosphatase-like YPA_1570 IPR006070 YrdC-like domain YPA_1570 IPR017945 DHBP synthase RibB-like alpha/beta domain YPA_1571 IPR000748 Pseudouridine synthase, RsuA/RluB/E/F YPA_1571 IPR002942 RNA-binding S4 domain YPA_1571 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F YPA_1571 IPR018496 Pseudouridine synthase, RsuA/RluB/E/F, conserved site YPA_1571 IPR020103 Pseudouridine synthase, catalytic domain YPA_1571 IPR036986 YPA_1571 YPA_1572 IPR003724 Adenosylcobalamin biosynthesis, ATP:cob(I)alamin adenosyltransferase CobA/CobO/ButR YPA_1572 IPR025826 Cob(I)alamin adenosyltransferase N-terminal domain YPA_1572 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPA_1573 IPR002347 Glucose/ribitol dehydrogenase YPA_1573 IPR020904 Short-chain dehydrogenase/reductase, conserved site YPA_1573 IPR036291 YPA_1573 YPA_1574 IPR002142 Peptidase S49 YPA_1574 IPR013703 Peptidase S49, N-terminal proteobacteria YPA_1574 IPR029045 ClpP/crotonase-like domain YPA_1575 IPR019633 Protein of unknown function DUF2498 YPA_1575 IPR038191 YPA_1575 YPA_1577 IPR003601 DNA topoisomerase, type IA, domain 2 YPA_1577 IPR003602 DNA topoisomerase, type IA, DNA-binding domain YPA_1577 IPR005733 DNA topoisomerase I, bacterial-type YPA_1577 IPR006171 Toprim domain YPA_1577 IPR013263 DNA topoisomerase I, zinc ribbon-like, bacterial-type YPA_1577 IPR013497 DNA topoisomerase, type IA, central YPA_1577 IPR013498 DNA topoisomerase, type IA, zn finger YPA_1577 IPR013824 DNA topoisomerase, type IA, central region, subdomain 1 YPA_1577 IPR013825 DNA topoisomerase, type IA, central region, subdomain 2 YPA_1577 IPR013826 DNA topoisomerase, type IA, central region, subdomain 3 YPA_1577 IPR023405 DNA topoisomerase, type IA, core domain YPA_1577 IPR023406 DNA topoisomerase, type IA, active site YPA_1577 IPR028612 DNA topoisomerase I, type IA YPA_1578 IPR000847 Transcription regulator HTH, LysR YPA_1578 IPR005119 LysR, substrate-binding YPA_1578 IPR036388 YPA_1578 YPA_1578 IPR036390 YPA_1578 YPA_1580 IPR000573 Aconitase A/isopropylmalate dehydratase small subunit, swivel YPA_1580 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha YPA_1580 IPR006249 Aconitate/iron regulatory protein 2 YPA_1580 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel YPA_1580 IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 YPA_1580 IPR018136 Aconitase family, 4Fe-4S cluster binding site YPA_1580 IPR036008 YPA_1580 YPA_1581 IPR000926 GTP cyclohydrolase II, RibA YPA_1581 IPR032677 YPA_1581 YPA_1581 IPR036144 YPA_1581 YPA_1583 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase YPA_1583 IPR036938 YPA_1583 YPA_1584 IPR010445 Protein of unknown function DUF1049 YPA_1584 IPR032906 YPA_1584 YPA_1585 IPR011990 Tetratricopeptide-like helical domain YPA_1585 IPR019734 Tetratricopeptide repeat YPA_1585 IPR030865 YPA_1585 YPA_1586 IPR010985 Ribbon-helix-helix YPA_1586 IPR013321 Arc-type ribbon-helix-helix YPA_1587 IPR001754 Orotidine 5'-phosphate decarboxylase domain YPA_1587 IPR011060 Ribulose-phosphate binding barrel YPA_1587 IPR013785 Aldolase-type TIM barrel YPA_1587 IPR014732 Orotidine 5'-phosphate decarboxylase YPA_1587 IPR018089 Orotidine 5'-phosphate decarboxylase, active site YPA_1588 IPR001950 Translation initiation factor SUI1 YPA_1588 IPR005872 Archaeal/bacterial translation initiation factor SUI1 YPA_1588 IPR036877 YPA_1588 YPA_1589 IPR008816 Glycine zipper 2TM domain YPA_1590 IPR001303 Class II aldolase/adducin N-terminal YPA_1590 IPR004661 L-ribulose-5-phosphate 4-epimerase YPA_1590 IPR036409 YPA_1590 YPA_1591 IPR018680 Protein of unknown function DUF2164 YPA_1592 IPR001585 Transaldolase YPA_1592 IPR004731 Transaldolase 3A/3B YPA_1592 IPR013785 Aldolase-type TIM barrel YPA_1592 IPR018225 Transaldolase, active site YPA_1593 IPR007423 Protein of unknown function DUF466 YPA_1594 IPR003706 Carbon starvation protein CstA YPA_1594 IPR025299 CstA C-terminal domain YPA_1595 IPR001900 YPA_1595 YPA_1595 IPR003029 Ribosomal protein S1, RNA-binding domain YPA_1595 IPR004476 Ribonuclease II/ribonuclease R YPA_1595 IPR011129 Cold shock protein YPA_1595 IPR011804 Ribonuclease II YPA_1595 IPR012340 Nucleic acid-binding, OB-fold YPA_1595 IPR013223 Ribonuclease B, N-terminal OB domain YPA_1595 IPR022966 Ribonuclease II/R, conserved site YPA_1596 IPR011701 Major facilitator superfamily YPA_1596 IPR036259 YPA_1596 YPA_1597 IPR001509 NAD-dependent epimerase/dehydratase, N-terminal domain YPA_1597 IPR036291 YPA_1597 YPA_1598 IPR000445 Helix-hairpin-helix motif YPA_1598 IPR003265 HhH-GPD domain YPA_1598 IPR003651 Endonuclease III-like, iron-sulphur cluster loop motif YPA_1598 IPR004035 Endonuclease III, iron-sulphur binding site YPA_1598 IPR004036 Endonuclease III-like, conserved site-2 YPA_1598 IPR005759 Endonuclease III YPA_1598 IPR011257 DNA glycosylase YPA_1598 IPR023170 Helix-turn-helix, base-excision DNA repair, C-terminal YPA_1599 IPR003667 Electron transport complex, Rnf/Nqr YPA_1599 IPR010968 Electron transport complex, RnfE YPA_1600 IPR007329 FMN-binding YPA_1600 IPR010209 Electron transport complex, RnfG YPA_1601 IPR004338 NADH-quinone reductase NQR2/RnfD YPA_1601 IPR011303 Electron transport complex, RnfD YPA_1602 IPR009057 Homeodomain-like YPA_1602 IPR011256 Regulatory factor, effector binding domain YPA_1602 IPR018060 DNA binding HTH domain, AraC-type YPA_1602 IPR020449 Transcription regulator HTH, AraC- type YPA_1602 IPR029442 GyrI-like small molecule binding domain YPA_1603 IPR009051 Alpha-helical ferredoxin YPA_1603 IPR010208 Electron transport complex protein RnfC YPA_1603 IPR011538 NADH:ubiquinone oxidoreductase, 51kDa subunit YPA_1603 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain YPA_1603 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site YPA_1603 IPR019554 Soluble ligand binding domain YPA_1603 IPR026902 RnfC Barrel sandwich hybrid domain YPA_1603 IPR037225 YPA_1603 YPA_1604 IPR007202 4Fe-4S domain YPA_1604 IPR010207 Electron transport complex, RnfB YPA_1604 IPR011005 Dihydropteroate synthase-like YPA_1604 IPR016463 Electron transport complex, RnfB, Proteobacteria YPA_1604 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site YPA_1605 IPR003667 Electron transport complex, Rnf/Nqr YPA_1605 IPR011293 Electron transport complex, RnfA YPA_1606 IPR019690 Protein of unknown function DUF2569 YPA_1608 IPR003439 ABC transporter-like YPA_1608 IPR011527 ABC transporter type 1, transmembrane domain YPA_1608 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPA_1608 IPR036640 YPA_1608 YPA_1609 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPA_1610 IPR003997 RTX secretion protein D, Gram-negative bacteria YPA_1610 IPR039562 YPA_1610 YPA_1611 IPR003997 RTX secretion protein D, Gram-negative bacteria YPA_1611 IPR006143 RND efflux pump, membrane fusion protein YPA_1611 IPR006144 Secretion protein HlyD, conserved site YPA_1612 IPR003439 ABC transporter-like YPA_1612 IPR003593 AAA+ ATPase domain YPA_1612 IPR005074 Peptidase C39, bacteriocin processing YPA_1612 IPR010132 ATPase, type I secretion system, HlyB YPA_1612 IPR011527 ABC transporter type 1, transmembrane domain YPA_1612 IPR017871 ABC transporter, conserved site YPA_1612 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPA_1612 IPR036640 YPA_1612 YPA_1613 IPR003762 L-arabinose isomerase YPA_1613 IPR004216 L-fucose/L-arabinose isomerase, C-terminal YPA_1613 IPR009015 L-fucose isomerase, N-terminal/central domain YPA_1613 IPR024664 L-arabinose isomerase, C-terminal YPA_1613 IPR038583 YPA_1613 YPA_1614 IPR005929 L-ribulokinase YPA_1614 IPR018484 Carbohydrate kinase, FGGY, N-terminal YPA_1614 IPR018485 Carbohydrate kinase, FGGY, C-terminal YPA_1615 IPR001761 Periplasmic binding protein/LacI sugar binding domain YPA_1615 IPR026266 L-arabinose-binding periplasmic protein YPA_1615 IPR028082 Periplasmic binding protein-like I YPA_1616 IPR003439 ABC transporter-like YPA_1616 IPR003593 AAA+ ATPase domain YPA_1616 IPR017871 ABC transporter, conserved site YPA_1616 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPA_1617 IPR001851 ABC transporter, permease YPA_1618 IPR003313 AraC-type arabinose-binding/dimerisation domain YPA_1618 IPR009057 Homeodomain-like YPA_1618 IPR018060 DNA binding HTH domain, AraC-type YPA_1618 IPR018062 HTH domain AraC-type, conserved site YPA_1618 IPR020449 Transcription regulator HTH, AraC- type YPA_1618 IPR037923 YPA_1618 YPA_1619 IPR000683 Oxidoreductase, N-terminal YPA_1619 IPR004104 Oxidoreductase, C-terminal YPA_1619 IPR036291 YPA_1619 YPA_1620 IPR016833 Putative sodium bile acid cotransporter YPA_1620 IPR038770 YPA_1620 YPA_1622 IPR010352 Protein of unknown function DUF945 YPA_1623 IPR001250 Mannose-6-phosphate isomerase, type I YPA_1623 IPR011051 RmlC-like cupin domain YPA_1623 IPR014710 RmlC-like jelly roll fold YPA_1623 IPR016305 Mannose-6-phosphate isomerase YPA_1623 IPR018050 Phosphomannose isomerase, type I, conserved site YPA_1624 IPR000362 Fumarate lyase family YPA_1624 IPR005677 Fumarate hydratase, class II YPA_1624 IPR008948 L-Aspartase-like YPA_1624 IPR018951 Fumarase C, C-terminal YPA_1624 IPR020557 Fumarate lyase, conserved site YPA_1624 IPR022761 Fumarate lyase, N-terminal YPA_1624 IPR024083 Fumarase/histidase, N-terminal YPA_1625 IPR008865 DNA replication terminus site-binding protein YPA_1625 IPR036381 YPA_1625 YPA_1625 IPR036384 YPA_1625 YPA_1626 IPR005829 Sugar transporter, conserved site YPA_1626 IPR011701 Major facilitator superfamily YPA_1626 IPR036259 YPA_1626 YPA_1627 IPR000847 Transcription regulator HTH, LysR YPA_1627 IPR005119 LysR, substrate-binding YPA_1627 IPR036388 YPA_1627 YPA_1627 IPR036390 YPA_1627 YPA_1628 IPR000600 ROK YPA_1628 IPR036388 YPA_1628 YPA_1628 IPR036390 YPA_1628 YPA_1629 IPR004472 Dethiobiotin synthase BioD YPA_1629 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPA_1630 IPR028082 Periplasmic binding protein-like I YPA_1632 IPR001270 ClpA/B family YPA_1632 IPR002611 IstB-like ATP-binding protein YPA_1632 IPR003593 AAA+ ATPase domain YPA_1632 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPA_1632 IPR028350 DNA replication protein DnaC/insertion sequence putative ATP-binding protein YPA_1633 IPR001584 Integrase, catalytic core YPA_1633 IPR006120 Resolvase, HTH domain YPA_1633 IPR009057 Homeodomain-like YPA_1633 IPR012337 Ribonuclease H-like domain YPA_1635 IPR000515 MetI-like domain YPA_1635 IPR035906 YPA_1635 YPA_1636 IPR003439 ABC transporter-like YPA_1636 IPR017871 ABC transporter, conserved site YPA_1636 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPA_1637 IPR000845 Nucleoside phosphorylase domain YPA_1637 IPR011271 AMP nucleosidase YPA_1637 IPR018953 AMP nucleoside phosphorylase, N-terminal YPA_1637 IPR035994 YPA_1637 YPA_1637 IPR037109 YPA_1637 YPA_1639 IPR009216 Virulence factor SrfB YPA_1640 IPR017030 Virulence effector, SrfC YPA_1641 IPR010846 Protein of unknown function DUF1460 YPA_1641 IPR038765 YPA_1641 YPA_1642 IPR000399 TPP-binding enzyme, conserved site YPA_1642 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding YPA_1642 IPR012000 Thiamine pyrophosphate enzyme, central domain YPA_1642 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain YPA_1642 IPR012846 Acetolactate synthase, large subunit, biosynthetic YPA_1642 IPR029035 DHS-like NAD/FAD-binding domain YPA_1642 IPR029061 Thiamin diphosphate-binding fold YPA_1644 IPR006439 HAD hydrolase, subfamily IA YPA_1644 IPR011951 HAD-superfamily hydrolase, subfamily IA, YjjG/YfnB YPA_1644 IPR023198 Phosphoglycolate phosphatase, domain 2 YPA_1644 IPR023214 HAD-like domain YPA_1644 IPR036412 YPA_1644 YPA_1645 IPR028932 TerB-C domain YPA_1645 IPR029024 TerB-like YPA_1646 IPR025266 TerB, N-terminal YPA_1647 IPR001952 Alkaline phosphatase YPA_1647 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha YPA_1647 IPR017850 Alkaline-phosphatase-like, core domain YPA_1647 IPR018299 Alkaline phosphatase, active site YPA_1648 IPR001497 Methylated-DNA-[protein]-cysteine S-methyltransferase, active site YPA_1648 IPR008332 Methylguanine DNA methyltransferase, ribonuclease-like domain YPA_1648 IPR014048 Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding YPA_1648 IPR023546 Methylated-DNA--protein-cysteine methyltransferase YPA_1648 IPR036217 YPA_1648 YPA_1648 IPR036388 YPA_1648 YPA_1648 IPR036631 YPA_1648 YPA_1649 IPR000595 Cyclic nucleotide-binding domain YPA_1649 IPR012318 Helix-turn-helix motif, Crp-type YPA_1649 IPR014710 RmlC-like jelly roll fold YPA_1649 IPR018335 Transcription regulator HTH, Crp-type, conserved site YPA_1649 IPR018490 Cyclic nucleotide-binding-like YPA_1649 IPR036388 YPA_1649 YPA_1649 IPR036390 YPA_1649 YPA_1650 IPR006016 UspA YPA_1651 IPR012136 NADP transhydrogenase, beta subunit YPA_1651 IPR029035 DHS-like NAD/FAD-binding domain YPA_1651 IPR034300 YPA_1651 YPA_1652 IPR007698 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, NAD(H)-binding domain YPA_1652 IPR007886 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, N-terminal YPA_1652 IPR008142 Alanine dehydrogenase/NAD(P) transhydrogenase, conserved site-1 YPA_1652 IPR008143 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, conserved site-2 YPA_1652 IPR024605 NAD(P) transhydrogenase, alpha subunit, C-terminal YPA_1652 IPR026255 NAD(P) transhydrogenase, alpha subunit YPA_1652 IPR036291 YPA_1652 YPA_1653 IPR010854 Domain of unknown function DUF1471 YPA_1653 IPR025539 YdgH protein YPA_1653 IPR025543 Dodecin-like YPA_1653 IPR036275 YPA_1653 YPA_1654 IPR002293 Amino acid/polyamine transporter I YPA_1654 IPR004754 Amino acid antiporter YPA_1656 IPR001789 Signal transduction response regulator, receiver domain YPA_1656 IPR001867 Signal transduction response regulator, C-terminal YPA_1656 IPR011006 CheY-like superfamily YPA_1656 IPR016032 Signal transduction response regulator, C-terminal effector YPA_1656 IPR036388 YPA_1656 YPA_1657 IPR003594 Histidine kinase-like ATPase, C-terminal domain YPA_1657 IPR003660 HAMP linker domain YPA_1657 IPR003661 Signal transduction histidine kinase EnvZ-like, dimerisation/phosphoacceptor domain YPA_1657 IPR004358 Signal transduction histidine kinase-related protein, C-terminal YPA_1657 IPR036097 YPA_1657 YPA_1657 IPR036890 YPA_1657 YPA_1658 IPR001333 Peptidase M32, carboxypeptidase Taq metallopeptidase YPA_1659 IPR002686 Transposase IS200-like YPA_1659 IPR036515 YPA_1659 YPA_1660 IPR005165 Anthrax toxin, edema factor, central YPA_1660 IPR022385 Rhs repeat-associated core YPA_1660 IPR035099 YPA_1660 YPA_1660 IPR037017 YPA_1660 YPA_1661 IPR035099 YPA_1661 YPA_1663 IPR007372 Lipid/polyisoprenoid-binding, YceI-like YPA_1663 IPR036761 YPA_1663 YPA_1664 IPR011577 Cytochrome b561, bacterial/Ni-hydrogenase YPA_1664 IPR016174 Di-haem cytochrome, transmembrane YPA_1666 IPR001254 Peptidase S1 YPA_1666 IPR001314 Peptidase S1A, chymotrypsin-type YPA_1666 IPR009003 Trypsin-like cysteine/serine peptidase domain YPA_1666 IPR018114 Peptidase S1, trypsin family, active site YPA_1666 IPR033116 YPA_1666 YPA_1667 IPR001387 Cro/C1-type helix-turn-helix domain YPA_1667 IPR010982 Lambda repressor-like, DNA-binding domain YPA_1668 IPR010222 RNA helicase, ATP-dependent DEAH box, HrpA-type YPA_1668 IPR011709 Domain of unknown function DUF1605 YPA_1668 IPR024590 RNA helicase, ATP-dependent DEAH box, HrpA, C-terminal YPA_1669 IPR001584 Integrase, catalytic core YPA_1669 IPR006120 Resolvase, HTH domain YPA_1669 IPR009057 Homeodomain-like YPA_1669 IPR012337 Ribonuclease H-like domain YPA_1670 IPR001270 ClpA/B family YPA_1670 IPR002611 IstB-like ATP-binding protein YPA_1670 IPR003593 AAA+ ATPase domain YPA_1670 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPA_1670 IPR028350 DNA replication protein DnaC/insertion sequence putative ATP-binding protein YPA_1671 IPR001650 Helicase, C-terminal YPA_1671 IPR003593 AAA+ ATPase domain YPA_1671 IPR007502 Helicase-associated domain YPA_1671 IPR010222 RNA helicase, ATP-dependent DEAH box, HrpA-type YPA_1671 IPR011545 DEAD/DEAH box helicase domain YPA_1671 IPR014001 Helicase, superfamily 1/2, ATP-binding domain YPA_1671 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPA_1672 IPR003680 Flavodoxin-like fold YPA_1672 IPR023048 NADH-azoreductase, FMN-dependent YPA_1672 IPR029039 Flavoprotein-like YPA_1673 IPR007324 Sugar-binding domain, putative YPA_1673 IPR036388 YPA_1673 YPA_1673 IPR037171 YPA_1673 YPA_1674 IPR000669 Mannitol dehydrogenase YPA_1674 IPR008927 6-phosphogluconate dehydrogenase, C-terminal-like YPA_1674 IPR013118 Mannitol dehydrogenase, C-terminal YPA_1674 IPR013131 Mannitol dehydrogenase, N-terminal YPA_1674 IPR013328 Dehydrogenase, multihelical YPA_1674 IPR036291 YPA_1674 YPA_1675 IPR008309 Uncharacterised conserved protein UCP025560 YPA_1676 IPR025985 YnbE-like lipoprotein YPA_1677 IPR021730 Dicarboxylate transport YPA_1678 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain YPA_1678 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain YPA_1678 IPR029752 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site 1 YPA_1678 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site YPA_1678 IPR036291 YPA_1678 YPA_1679 IPR005184 Domain of unknown function DUF306, Meta/HslJ YPA_1679 IPR038670 YPA_1679 YPA_1680 IPR005590 Protein of unknown function DUF333 YPA_1681 IPR003416 MgtC/SapB/SrpB transporter YPA_1682 IPR000390 Small multidrug resistance protein family YPA_1683 IPR002869 Pyruvate-flavodoxin oxidoreductase, central domain YPA_1683 IPR002880 Pyruvate flavodoxin/ferredoxin oxidoreductase, N-terminal YPA_1683 IPR009014 Transketolase, C-terminal/Pyruvate-ferredoxin oxidoreductase, domain II YPA_1683 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding YPA_1683 IPR011895 Pyruvate-flavodoxin oxidoreductase YPA_1683 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain YPA_1683 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site YPA_1683 IPR019456 Pyruvate-flavodoxin oxidoreductase, EKR domain YPA_1683 IPR019752 Pyruvate/ketoisovalerate oxidoreductase, catalytic domain YPA_1683 IPR029061 Thiamin diphosphate-binding fold YPA_1683 IPR033412 YPA_1683 YPA_1683 IPR037112 YPA_1683 YPA_1684 IPR011063 tRNA(Ile)-lysidine/2-thiocytidine synthase YPA_1684 IPR012089 2-thiocytidine tRNA biosynthesis protein, TtcA YPA_1684 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold YPA_1684 IPR035107 YPA_1684 YPA_1685 IPR013094 Alpha/beta hydrolase fold-3 YPA_1685 IPR029058 Alpha/Beta hydrolase fold YPA_1686 IPR000551 MerR-type HTH domain YPA_1686 IPR009061 DNA binding domain, putative YPA_1687 IPR002523 Mg2+ transporter protein, CorA-like/Zinc transport protein ZntB YPA_1688 IPR000914 Bacterial extracellular solute-binding protein, family 5 YPA_1688 IPR023765 Bacterial extracellular solute-binding protein, family 5, conserved site YPA_1688 IPR030678 YPA_1688 YPA_1689 IPR000834 Peptidase M14, carboxypeptidase A YPA_1690 IPR013341 Mandelate racemase/muconate lactonizing enzyme, N-terminal domain YPA_1690 IPR013342 Mandelate racemase/muconate lactonizing enzyme, C-terminal YPA_1690 IPR018110 Mandelate racemase/muconate lactonizing enzyme, conserved site YPA_1690 IPR029017 Enolase N-terminal domain-like YPA_1690 IPR029065 Enolase C-terminal domain-like YPA_1690 IPR036849 YPA_1690 YPA_1691 IPR002065 Putative thiol peroxidase Tpx YPA_1691 IPR013740 Redoxin YPA_1691 IPR018219 Thiol peroxidase conserved site YPA_1691 IPR036249 YPA_1691 YPA_1692 IPR002686 Transposase IS200-like YPA_1692 IPR036515 YPA_1692 YPA_1693 IPR000014 PAS domain YPA_1693 IPR002078 RNA polymerase sigma factor 54 interaction domain YPA_1693 IPR003593 AAA+ ATPase domain YPA_1693 IPR009057 Homeodomain-like YPA_1693 IPR013767 PAS fold YPA_1693 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 YPA_1693 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 YPA_1693 IPR025944 Sigma-54 interaction domain, conserved site YPA_1693 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPA_1693 IPR030828 YPA_1693 YPA_1693 IPR035965 YPA_1693 YPA_1694 IPR011979 Conserved hypothetical protein CHP02293 YPA_1694 IPR024467 Domain of unknown function DUF2384 YPA_1695 IPR014914 RES YPA_1696 IPR006507 Uncharacterised protein family UPF0283 YPA_1696 IPR021147 Protein of unknown function DUF697 YPA_1697 IPR007413 Protein of unknown function DUF463, YcjX-like protein YPA_1698 IPR014321 Phage shock protein, PspD YPA_1699 IPR007168 Phage shock protein, PspC, N-terminal YPA_1699 IPR014320 Phage shock protein, PspC YPA_1700 IPR009554 Phage shock protein, PspB YPA_1701 IPR007157 PspA/IM30 YPA_1701 IPR014319 Phage shock protein, PspA YPA_1702 IPR002078 RNA polymerase sigma factor 54 interaction domain YPA_1702 IPR002197 DNA binding HTH domain, Fis-type YPA_1702 IPR003593 AAA+ ATPase domain YPA_1702 IPR009057 Homeodomain-like YPA_1702 IPR014317 Transcription activator PspF YPA_1702 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 YPA_1702 IPR025944 Sigma-54 interaction domain, conserved site YPA_1702 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPA_1703 IPR002686 Transposase IS200-like YPA_1703 IPR036515 YPA_1703 YPA_1704 IPR000914 Bacterial extracellular solute-binding protein, family 5 YPA_1704 IPR023765 Bacterial extracellular solute-binding protein, family 5, conserved site YPA_1704 IPR030678 YPA_1704 YPA_1705 IPR000515 MetI-like domain YPA_1705 IPR035906 YPA_1705 YPA_1706 IPR000515 MetI-like domain YPA_1706 IPR025966 Oligopeptide transport permease C-like, N-terminal domain YPA_1706 IPR035906 YPA_1706 YPA_1707 IPR003439 ABC transporter-like YPA_1707 IPR003593 AAA+ ATPase domain YPA_1707 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal YPA_1707 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPA_1708 IPR003439 ABC transporter-like YPA_1708 IPR003593 AAA+ ATPase domain YPA_1708 IPR017871 ABC transporter, conserved site YPA_1708 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPA_1709 IPR029032 AhpD-like YPA_1710 IPR000109 Proton-dependent oligopeptide transporter family YPA_1710 IPR005279 Amino acid/peptide transporter family YPA_1710 IPR018456 PTR2 family proton/oligopeptide symporter, conserved site YPA_1710 IPR023517 Amino acid/peptide transporter family, dipeptide and tripeptide permease A YPA_1710 IPR036259 YPA_1710 YPA_1711 IPR009698 Protein of unknown function DUF1282 YPA_1712 IPR020317 Uncharacterised protein family YjbD YPA_1713 IPR036282 YPA_1713 YPA_1714 IPR004625 Pyridoxal phosphate (active vitamin B6) biosynthesis, pyridoxal kinase YPA_1714 IPR013749 Pyridoxamine kinase/Phosphomethylpyrimidine kinase YPA_1714 IPR023685 Pyridoxal kinase PdxY YPA_1714 IPR029056 Ribokinase-like YPA_1715 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site YPA_1715 IPR002305 Aminoacyl-tRNA synthetase, class Ic YPA_1715 IPR002307 Tyrosine-tRNA ligase YPA_1715 IPR002942 RNA-binding S4 domain YPA_1715 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold YPA_1715 IPR024107 Tyrosine-tRNA ligase, bacterial-type, type 1 YPA_1715 IPR036986 YPA_1715 YPA_1716 IPR000659 Pyridoxamine 5'-phosphate oxidase YPA_1716 IPR011576 Pyridoxamine 5'-phosphate oxidase-like, FMN-binding domain YPA_1716 IPR012349 FMN-binding split barrel YPA_1716 IPR019576 Pyridoxine 5'-phosphate oxidase, dimerisation, C-terminal YPA_1716 IPR019740 Pyridoxamine 5'-phosphate oxidase, conserved site YPA_1717 IPR018660 C-type lysozyme, inhibitor YPA_1717 IPR036328 YPA_1717 YPA_1718 IPR005338 Anhydro-N-acetylmuramic acid kinase YPA_1719 IPR008816 Glycine zipper 2TM domain YPA_1720 IPR000835 MarR-type HTH domain YPA_1720 IPR023071 Transcriptional regulator, SlyA YPA_1720 IPR023187 Transcriptional regulator MarR-type, conserved site YPA_1720 IPR036388 YPA_1720 YPA_1720 IPR036390 YPA_1720 YPA_1721 IPR020471 Aldo/keto reductase subgroup YPA_1721 IPR023210 NADP-dependent oxidoreductase domain YPA_1721 IPR036812 YPA_1721 YPA_1722 IPR010710 Protein of unknown function DUF1289 YPA_1723 IPR000917 Sulfatase YPA_1723 IPR012549 Domain of unknown function DUF1705 YPA_1723 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha YPA_1723 IPR017850 Alkaline-phosphatase-like, core domain YPA_1724 IPR001647 DNA-binding HTH domain, TetR-type YPA_1724 IPR009057 Homeodomain-like YPA_1724 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal YPA_1724 IPR036271 YPA_1724 YPA_1725 IPR001155 NADH:flavin oxidoreductase/NADH oxidase, N-terminal YPA_1725 IPR013785 Aldolase-type TIM barrel YPA_1726 IPR022385 Rhs repeat-associated core YPA_1727 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain YPA_1727 IPR004361 Glyoxalase I YPA_1727 IPR018146 Glyoxalase I, conserved site YPA_1727 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase YPA_1728 IPR005987 Ribonuclease T YPA_1728 IPR012337 Ribonuclease H-like domain YPA_1728 IPR013520 Exonuclease, RNase T/DNA polymerase III YPA_1728 IPR036397 YPA_1728 YPA_1729 IPR002109 Glutaredoxin YPA_1729 IPR004480 Monothiol glutaredoxin-related YPA_1729 IPR014434 Monothiol glutaredoxin YPA_1729 IPR036249 YPA_1729 YPA_1730 IPR000064 Endopeptidase, NLPC/P60 domain YPA_1730 IPR038765 YPA_1730 YPA_1731 IPR001189 Manganese/iron superoxide dismutase YPA_1731 IPR019831 Manganese/iron superoxide dismutase, N-terminal YPA_1731 IPR019832 Manganese/iron superoxide dismutase, C-terminal YPA_1731 IPR019833 Manganese/iron superoxide dismutase, binding site YPA_1731 IPR036314 YPA_1731 YPA_1731 IPR036324 YPA_1731 YPA_1732 IPR000843 Transcription regulator HTH, LacI YPA_1732 IPR010982 Lambda repressor-like, DNA-binding domain YPA_1732 IPR023588 Transcription regulator HTH, PurR YPA_1732 IPR028082 Periplasmic binding protein-like I YPA_1733 IPR000847 Transcription regulator HTH, LysR YPA_1733 IPR005119 LysR, substrate-binding YPA_1733 IPR036388 YPA_1733 YPA_1733 IPR036390 YPA_1733 YPA_1734 IPR004812 Drug resistance transporter Bcr/CmlA subfamily YPA_1734 IPR011701 Major facilitator superfamily YPA_1734 IPR036259 YPA_1734 YPA_1735 IPR003333 Mycolic acid cyclopropane synthase YPA_1735 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase-like YPA_1736 IPR001783 Lumazine-binding protein YPA_1736 IPR017938 Riboflavin synthase-like beta-barrel YPA_1736 IPR023366 ATP synthase subunit alpha-like domain YPA_1736 IPR026017 Lumazine-binding domain YPA_1737 IPR002528 Multi antimicrobial extrusion protein YPA_1737 IPR022913 Multidrug resistance protein MdtK YPA_1738 IPR001697 Pyruvate kinase YPA_1738 IPR011037 Pyruvate kinase-like, insert domain YPA_1738 IPR015793 Pyruvate kinase, barrel YPA_1738 IPR015795 Pyruvate kinase, C-terminal YPA_1738 IPR015806 Pyruvate kinase, beta-barrel insert domain YPA_1738 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain YPA_1738 IPR018209 Pyruvate kinase, active site YPA_1738 IPR036918 YPA_1738 YPA_1739 IPR006817 Lipoprotein leucine-zipper YPA_1739 IPR016367 Murein-lipoprotein YPA_1740 IPR002686 Transposase IS200-like YPA_1740 IPR036515 YPA_1740 YPA_1741 IPR001584 Integrase, catalytic core YPA_1741 IPR006120 Resolvase, HTH domain YPA_1741 IPR009057 Homeodomain-like YPA_1741 IPR012337 Ribonuclease H-like domain YPA_1742 IPR001270 ClpA/B family YPA_1742 IPR002611 IstB-like ATP-binding protein YPA_1742 IPR003593 AAA+ ATPase domain YPA_1742 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPA_1742 IPR028350 DNA replication protein DnaC/insertion sequence putative ATP-binding protein YPA_1743 IPR005490 L,D-transpeptidase catalytic domain YPA_1743 IPR038063 YPA_1743 YPA_1744 IPR003808 Fe-S metabolism associated domain, SufE-like YPA_1744 IPR023939 Cysteine desulfuration protein SufE YPA_1745 IPR000192 Aminotransferase class V domain YPA_1745 IPR010970 Cysteine desulfurase, SufS YPA_1745 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 YPA_1745 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 YPA_1745 IPR015424 Pyridoxal phosphate-dependent transferase YPA_1745 IPR020578 Aminotransferase class-V pyridoxal-phosphate binding site YPA_1746 IPR000825 SUF system FeS cluster assembly, SufBD YPA_1746 IPR011542 SUF system FeS cluster assembly, SufD YPA_1746 IPR037284 YPA_1746 YPA_1747 IPR003439 ABC transporter-like YPA_1747 IPR003593 AAA+ ATPase domain YPA_1747 IPR010230 FeS cluster assembly SUF system, ATPase SufC YPA_1747 IPR017871 ABC transporter, conserved site YPA_1747 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPA_1748 IPR000825 SUF system FeS cluster assembly, SufBD YPA_1748 IPR010231 SUF system FeS cluster assembly, SufB YPA_1748 IPR037284 YPA_1748 YPA_1749 IPR000361 FeS cluster biogenesis YPA_1749 IPR016092 FeS cluster insertion protein YPA_1749 IPR017870 FeS cluster insertion, C-terminal, conserved site YPA_1749 IPR035903 YPA_1749 YPA_1750 IPR003736 Phenylacetic acid degradation-related domain YPA_1750 IPR006683 Thioesterase superfamily YPA_1750 IPR029069 HotDog domain YPA_1750 IPR030863 YPA_1750 YPA_1751 IPR004113 FAD-linked oxidase, C-terminal YPA_1751 IPR006094 FAD linked oxidase, N-terminal YPA_1751 IPR009051 Alpha-helical ferredoxin YPA_1751 IPR016164 FAD-linked oxidase-like, C-terminal YPA_1751 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain YPA_1751 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site YPA_1751 IPR036318 YPA_1751 YPA_1752 IPR002549 Uncharacterised protein family UPF0118 YPA_1753 IPR000121 PEP-utilising enzyme, C-terminal YPA_1753 IPR002192 Pyruvate phosphate dikinase, PEP/pyruvate-binding YPA_1753 IPR006319 Phosphoenolpyruvate synthase YPA_1753 IPR008279 PEP-utilising enzyme, mobile domain YPA_1753 IPR013815 ATP-grasp fold, subdomain 1 YPA_1753 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain YPA_1753 IPR018274 PEP-utilising enzyme, active site YPA_1753 IPR023151 PEP-utilising enzyme, conserved site YPA_1753 IPR036637 YPA_1753 YPA_1754 IPR005177 Bifunctional kinase-pyrophosphorylase YPA_1754 IPR008917 Transcription factor, Skn-1-like, DNA-binding domain YPA_1754 IPR026530 Phosphoenolpyruvate synthase regulatory protein YPA_1755 IPR006218 DAHP synthetase I/KDSA YPA_1755 IPR006219 DHAP synthase, class 1 YPA_1755 IPR013785 Aldolase-type TIM barrel YPA_1756 IPR003846 Uncharacterised protein family UPF0061 YPA_1757 IPR003846 Uncharacterised protein family UPF0061 YPA_1758 IPR004143 Biotin/lipoate A/B protein ligase YPA_1758 IPR004562 Lipoyltransferase/lipoate-protein ligase YPA_1758 IPR019491 Lipoate protein ligase, C-terminal YPA_1758 IPR023741 Lipoate-protein ligase A YPA_1759 IPR000064 Endopeptidase, NLPC/P60 domain YPA_1759 IPR038765 YPA_1759 YPA_1760 IPR022832 Probable 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF YPA_1761 IPR000620 Drug/metabolite transporter YPA_1761 IPR022883 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase, subunit ArnE YPA_1762 IPR003342 Glycosyl transferase, family 39 YPA_1762 IPR022839 Undecaprenyl phosphate-alpha-4-amino-4-deoxy-L-arabinose arabinosyl transferase YPA_1763 IPR002509 Polysaccharide deacetylase YPA_1763 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel YPA_1763 IPR023557 4-deoxy-4-formamido-L-arabinose-phosphoundecaprenol deformylase ArnD, probable YPA_1764 IPR001509 NAD-dependent epimerase/dehydratase, N-terminal domain YPA_1764 IPR002376 Formyl transferase, N-terminal YPA_1764 IPR005793 Formyl transferase, C-terminal YPA_1764 IPR011034 Formyl transferase, C-terminal-like YPA_1764 IPR021168 Bifunctional polymyxin resistance protein, ArnA YPA_1764 IPR036291 YPA_1764 YPA_1764 IPR036477 YPA_1764 YPA_1765 IPR001173 Glycosyltransferase 2-like YPA_1765 IPR022857 Undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase YPA_1765 IPR029044 Nucleotide-diphospho-sugar transferases YPA_1766 IPR000653 DegT/DnrJ/EryC1/StrS aminotransferase YPA_1766 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 YPA_1766 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 YPA_1766 IPR015424 Pyridoxal phosphate-dependent transferase YPA_1766 IPR022850 UDP-4-amino-4-deoxy-L-arabinose-oxoglutarate aminotransferase, ArnB YPA_1767 IPR003439 ABC transporter-like YPA_1767 IPR003593 AAA+ ATPase domain YPA_1767 IPR017871 ABC transporter, conserved site YPA_1767 IPR023693 ABC transporter, vitamin B12, BtuD YPA_1767 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPA_1768 IPR000889 Glutathione peroxidase YPA_1768 IPR029759 Glutathione peroxidase active site YPA_1768 IPR033674 YPA_1768 YPA_1768 IPR036249 YPA_1768 YPA_1769 IPR000522 ABC transporter, permease protein YPA_1769 IPR023691 ABC transporter, vitamin B12 import, permease protein BtuC YPA_1769 IPR037294 YPA_1769 YPA_1770 IPR019638 Protein of unknown function DUF2502 YPA_1771 IPR000119 Histone-like bacterial DNA-binding protein YPA_1771 IPR005684 Integration host factor, alpha subunit YPA_1771 IPR010992 Integration host factor (IHF)-like DNA-binding domain YPA_1771 IPR020816 Histone-like DNA-binding protein, conserved site YPA_1772 IPR002547 tRNA-binding domain YPA_1772 IPR004532 Phenylalanine-tRNA ligase, class IIc, beta subunit YPA_1772 IPR005121 Phenylalanine-tRNA ligase, beta subunit, ferrodoxin-fold anticodon-binding YPA_1772 IPR005146 B3/B4 tRNA-binding domain YPA_1772 IPR005147 tRNA synthetase, B5-domain YPA_1772 IPR009061 DNA binding domain, putative YPA_1772 IPR012340 Nucleic acid-binding, OB-fold YPA_1772 IPR020825 Phenylalanyl-tRNA synthetase, B3/B4 YPA_1772 IPR036690 YPA_1772 YPA_1773 IPR002319 Phenylalanyl-tRNA synthetase YPA_1773 IPR004188 Phenylalanine-tRNA ligase, class II, N-terminal YPA_1773 IPR004529 Phenylalanyl-tRNA synthetase, class IIc, alpha subunit YPA_1773 IPR010978 tRNA-binding arm YPA_1773 IPR022911 Phenylalanine-tRNA ligase alpha chain 1, bacterial YPA_1775 IPR005813 Ribosomal protein L20 YPA_1775 IPR035566 YPA_1775 YPA_1776 IPR001706 Ribosomal protein L35, non-mitochondrial YPA_1776 IPR018265 Ribosomal protein L35, conserved site YPA_1776 IPR021137 Ribosomal protein L35 YPA_1776 IPR037229 YPA_1776 YPA_1777 IPR001288 Translation initiation factor 3 YPA_1777 IPR019815 Translation initiation factor 3, C-terminal YPA_1777 IPR036788 YPA_1777 YPA_1778 IPR002314 Aminoacyl-tRNA synthetase, class II (G/ H/ P/ S), conserved domain YPA_1778 IPR002320 Threonine-tRNA ligase, class IIa YPA_1778 IPR004095 TGS YPA_1778 IPR004154 Anticodon-binding YPA_1778 IPR012675 Beta-grasp domain YPA_1778 IPR012676 TGS-like YPA_1778 IPR012947 Threonyl/alanyl tRNA synthetase, SAD YPA_1778 IPR018163 Threonyl/alanyl tRNA synthetase, class II-like, putative editing domain YPA_1778 IPR036621 YPA_1778 YPA_1779 IPR025309 KTSC domain YPA_1781 IPR002771 Multiple antibiotic resistance (MarC)-related YPA_1782 IPR000189 Prokaryotic transglycosylase, active site YPA_1782 IPR008258 Lytic transglycosylase-like SLT domain YPA_1782 IPR023346 Lysozyme-like domain YPA_1783 IPR006127 Periplasmic solute binding protein family YPA_1783 IPR006128 Adhesion lipoprotein YPA_1783 IPR006129 Adhesin B YPA_1784 IPR003439 ABC transporter-like YPA_1784 IPR003593 AAA+ ATPase domain YPA_1784 IPR017871 ABC transporter, conserved site YPA_1784 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPA_1785 IPR001626 ABC-3 YPA_1785 IPR037294 YPA_1785 YPA_1786 IPR001626 ABC-3 YPA_1786 IPR037294 YPA_1786 YPA_1788 IPR011009 Protein kinase-like domain YPA_1788 IPR016477 Fructosamine/Ketosamine-3-kinase YPA_1789 IPR025229 YniB-like protein YPA_1790 IPR006439 HAD hydrolase, subfamily IA YPA_1790 IPR023198 Phosphoglycolate phosphatase, domain 2 YPA_1790 IPR023214 HAD-like domain YPA_1790 IPR036412 YPA_1790 YPA_1791 IPR001207 Transposase, mutator type YPA_1792 IPR011051 RmlC-like cupin domain YPA_1792 IPR013096 Cupin 2, conserved barrel YPA_1792 IPR014710 RmlC-like jelly roll fold YPA_1792 IPR025499 Pectin degradation protein KdgF YPA_1793 IPR007045 5-keto 4-deoxyuronate isomerase YPA_1793 IPR011051 RmlC-like cupin domain YPA_1793 IPR014710 RmlC-like jelly roll fold YPA_1793 IPR021120 KduI/IolB isomerase YPA_1793 IPR027449 5-keto-4-deoxyuronate isomerase, N-terminal domain YPA_1794 IPR002347 Glucose/ribitol dehydrogenase YPA_1794 IPR011286 2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase YPA_1794 IPR020904 Short-chain dehydrogenase/reductase, conserved site YPA_1794 IPR036291 YPA_1794 YPA_1795 IPR010702 Periplasmic pectate lyase YPA_1796 IPR001270 ClpA/B family YPA_1796 IPR002611 IstB-like ATP-binding protein YPA_1796 IPR003593 AAA+ ATPase domain YPA_1796 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPA_1796 IPR028350 DNA replication protein DnaC/insertion sequence putative ATP-binding protein YPA_1797 IPR001584 Integrase, catalytic core YPA_1797 IPR006120 Resolvase, HTH domain YPA_1797 IPR009057 Homeodomain-like YPA_1797 IPR012337 Ribonuclease H-like domain YPA_1798 IPR010702 Periplasmic pectate lyase YPA_1799 IPR000515 MetI-like domain YPA_1799 IPR035906 YPA_1799 YPA_1800 IPR000515 MetI-like domain YPA_1800 IPR035906 YPA_1800 YPA_1801 IPR003439 ABC transporter-like YPA_1801 IPR003593 AAA+ ATPase domain YPA_1801 IPR008995 Molybdate/tungstate binding, C-terminal YPA_1801 IPR017871 ABC transporter, conserved site YPA_1801 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPA_1802 IPR006059 Bacterial extracellular solute-binding, family 1 YPA_1803 IPR009331 Oligogalacturonate-specific porin YPA_1804 IPR007404 Protein of unknown function DUF457 YPA_1804 IPR016956 LexA regulated metal-dependent membrane hydrolase, predicted YPA_1805 IPR001991 Sodium:dicarboxylate symporter YPA_1805 IPR036458 YPA_1805 YPA_1806 IPR002477 Peptidoglycan binding-like YPA_1806 IPR002502 N-acetylmuramoyl-L-alanine amidase domain YPA_1806 IPR036365 YPA_1806 YPA_1806 IPR036366 YPA_1806 YPA_1806 IPR036505 YPA_1806 YPA_1807 IPR005471 Transcription regulator IclR, N-terminal YPA_1807 IPR014757 Transcription regulator IclR, C-terminal YPA_1807 IPR029016 GAF domain-like YPA_1807 IPR036388 YPA_1807 YPA_1807 IPR036390 YPA_1807 YPA_1808 IPR015943 WD40/YVTN repeat-like-containing domain YPA_1808 IPR027946 Oligogalacturonate lyase domain YPA_1809 IPR011701 Major facilitator superfamily YPA_1809 IPR036259 YPA_1809 YPA_1810 IPR001829 Pili assembly chaperone, bacterial YPA_1810 IPR008962 PapD-like YPA_1810 IPR013783 Immunoglobulin-like fold YPA_1810 IPR016147 PapD, N-terminal, bacterial YPA_1810 IPR016148 Pili assembly chaperone, C-terminal domain YPA_1810 IPR018046 Pili assembly chaperone, conserved site YPA_1810 IPR036316 YPA_1810 YPA_1811 IPR008966 Adhesion domain YPA_1811 IPR036937 YPA_1811 YPA_1812 IPR000015 Outer membrane usher protein YPA_1812 IPR018030 Fimbrial membrane usher, conserved site YPA_1812 IPR025885 PapC, N-terminal domain YPA_1812 IPR025949 PapC-like, C-terminal domain YPA_1812 IPR037224 YPA_1812 YPA_1813 IPR001829 Pili assembly chaperone, bacterial YPA_1813 IPR008962 PapD-like YPA_1813 IPR013783 Immunoglobulin-like fold YPA_1813 IPR016147 PapD, N-terminal, bacterial YPA_1813 IPR016148 Pili assembly chaperone, C-terminal domain YPA_1813 IPR018046 Pili assembly chaperone, conserved site YPA_1813 IPR036316 YPA_1813 YPA_1814 IPR008966 Adhesion domain YPA_1814 IPR036937 YPA_1814 YPA_1814 IPR039458 YPA_1814 YPA_1815 IPR001915 Peptidase M48 YPA_1815 IPR022919 Peptidase M48, protease HtpX, putative YPA_1816 IPR001478 PDZ domain YPA_1816 IPR004447 C-terminal-processing peptidase S41A YPA_1816 IPR005151 Tail specific protease YPA_1816 IPR020992 Tail specific protease, C-terminal YPA_1816 IPR029045 ClpP/crotonase-like domain YPA_1816 IPR036034 YPA_1816 YPA_1817 IPR016103 ProQ/FinO domain YPA_1817 IPR023529 Transporter ProP effector, ProQ YPA_1817 IPR035236 YPA_1817 YPA_1817 IPR036442 YPA_1817 YPA_1818 IPR003018 GAF domain YPA_1818 IPR029016 GAF domain-like YPA_1819 IPR005219 Conserved hypothetical protein CHP00155 YPA_1819 IPR007498 Paraquat-inducible protein A YPA_1820 IPR003399 Mammalian cell entry-related YPA_1821 IPR007893 Spore coat protein U YPA_1822 IPR007893 Spore coat protein U YPA_1823 IPR007893 Spore coat protein U YPA_1824 IPR008962 PapD-like YPA_1824 IPR013783 Immunoglobulin-like fold YPA_1824 IPR016147 PapD, N-terminal, bacterial YPA_1825 IPR000015 Outer membrane usher protein YPA_1825 IPR025949 PapC-like, C-terminal domain YPA_1826 IPR007893 Spore coat protein U YPA_1827 IPR009950 Protein of unknown function DUF1480 YPA_1828 IPR007374 ASCH domain YPA_1828 IPR009326 Protein of unknown function DUF984 YPA_1828 IPR015947 PUA-like domain YPA_1830 IPR001584 Integrase, catalytic core YPA_1830 IPR006120 Resolvase, HTH domain YPA_1830 IPR009057 Homeodomain-like YPA_1830 IPR012337 Ribonuclease H-like domain YPA_1831 IPR001270 ClpA/B family YPA_1831 IPR002611 IstB-like ATP-binding protein YPA_1831 IPR003593 AAA+ ATPase domain YPA_1831 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPA_1831 IPR028350 DNA replication protein DnaC/insertion sequence putative ATP-binding protein YPA_1833 IPR002641 Patatin/Phospholipase A2-related YPA_1833 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase YPA_1835 IPR000821 Alanine racemase YPA_1835 IPR001608 Alanine racemase, N-terminal YPA_1835 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal YPA_1835 IPR011079 Alanine racemase, C-terminal YPA_1835 IPR020622 Alanine racemase, pyridoxal-phosphate attachment site YPA_1835 IPR029066 PLP-binding barrel YPA_1837 IPR005594 YadA-like, C-terminal YPA_1837 IPR008635 Coiled stalk of trimeric autotransporter adhesin YPA_1837 IPR008640 Head domain of trimeric autotransporter adhesin YPA_1837 IPR011049 Serralysin-like metalloprotease, C-terminal YPA_1838 IPR008635 Coiled stalk of trimeric autotransporter adhesin YPA_1838 IPR008640 Head domain of trimeric autotransporter adhesin YPA_1838 IPR011049 Serralysin-like metalloprotease, C-terminal YPA_1839 IPR002502 N-acetylmuramoyl-L-alanine amidase domain YPA_1839 IPR036365 YPA_1839 YPA_1839 IPR036366 YPA_1839 YPA_1839 IPR036505 YPA_1839 YPA_1841 IPR007439 Chemotaxis phosphatase, CheZ YPA_1842 IPR001789 Signal transduction response regulator, receiver domain YPA_1842 IPR011006 CheY-like superfamily YPA_1843 IPR000673 Signal transduction response regulator, chemotaxis, protein-glutamate methylesterase YPA_1843 IPR001789 Signal transduction response regulator, receiver domain YPA_1843 IPR008248 Signal transduction response regulator, chemotaxis, CheB YPA_1843 IPR011006 CheY-like superfamily YPA_1843 IPR035909 YPA_1843 YPA_1844 IPR000780 MCP methyltransferase, CheR-type YPA_1844 IPR022641 MCP methyltransferase, CheR-type, all-alpha domain, N-terminal YPA_1844 IPR022642 MCP methyltransferase, CheR-type, SAM-binding domain, C-terminal YPA_1844 IPR026024 Chemotaxis protein methyltransferase CheR YPA_1844 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase-like YPA_1844 IPR036804 YPA_1844 YPA_1845 IPR003122 Chemotaxis methyl-accepting receptor, ligand-binding YPA_1845 IPR003660 HAMP linker domain YPA_1845 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain YPA_1845 IPR004090 Chemotaxis methyl-accepting receptor YPA_1845 IPR004091 Chemotaxis methyl-accepting receptor, methyl-accepting site YPA_1845 IPR035440 YPA_1845 YPA_1846 IPR003122 Chemotaxis methyl-accepting receptor, ligand-binding YPA_1846 IPR003660 HAMP linker domain YPA_1846 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain YPA_1846 IPR004090 Chemotaxis methyl-accepting receptor YPA_1846 IPR004091 Chemotaxis methyl-accepting receptor, methyl-accepting site YPA_1846 IPR035440 YPA_1846 YPA_1848 IPR014600 Uncharacterised conserved protein UCP035905, membrane protein YPA_1848 IPR019286 Protein of unknown function DUF2339, transmembrane YPA_1849 IPR005546 Autotransporter beta-domain YPA_1849 IPR006315 Outer membrane autotransporter barrel YPA_1849 IPR011050 Pectin lyase fold/virulence factor YPA_1849 IPR012332 P22 tailspike C-terminal domain-like YPA_1849 IPR036709 YPA_1849 YPA_1850 IPR013559 YheO-like YPA_1850 IPR039445 YPA_1850 YPA_1851 IPR013022 Xylose isomerase-like, TIM barrel domain YPA_1851 IPR036237 YPA_1851 YPA_1852 IPR006056 Enamine/imine deaminase YjgF-like YPA_1852 IPR006175 YjgF/Yer057p/UK114 family YPA_1852 IPR035959 YPA_1852 YPA_1853 IPR011701 Major facilitator superfamily YPA_1853 IPR036259 YPA_1853 YPA_1854 IPR002545 CheW-like protein YPA_1854 IPR036061 YPA_1854 YPA_1855 IPR002545 CheW-like protein YPA_1855 IPR003594 Histidine kinase-like ATPase, C-terminal domain YPA_1855 IPR004105 Histidine kinase CheA-like, homodimeric domain YPA_1855 IPR004358 Signal transduction histidine kinase-related protein, C-terminal YPA_1855 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain YPA_1855 IPR015162 CheY binding YPA_1855 IPR035891 YPA_1855 YPA_1855 IPR036061 YPA_1855 YPA_1855 IPR036097 YPA_1855 YPA_1855 IPR036641 YPA_1855 YPA_1855 IPR036890 YPA_1855 YPA_1855 IPR037006 YPA_1855 YPA_1856 IPR006665 Outer membrane protein, OmpA/MotB, C-terminal YPA_1856 IPR025713 Motility protein B, N-terminal domain YPA_1856 IPR036737 YPA_1856 YPA_1857 IPR000540 Flagellar motor protein MotA, conserved site YPA_1857 IPR002898 MotA/TolQ/ExbB proton channel YPA_1857 IPR022522 Flagellar motor stator, MotA YPA_1858 IPR007944 Flagellar transcriptional activator FlhC YPA_1859 IPR023559 Flagellar transcriptional activator FlhD YPA_1859 IPR036194 YPA_1859 YPA_1860 IPR001757 Cation-transporting P-type ATPase YPA_1860 IPR004014 Cation-transporting P-type ATPase, N-terminal YPA_1860 IPR006068 Cation-transporting P-type ATPase, C-terminal YPA_1860 IPR006415 Magnesium-transporting P-type ATPase, subfamily IIIB YPA_1860 IPR008250 P-type ATPase, A domain YPA_1860 IPR018303 P-type ATPase, phosphorylation site YPA_1860 IPR023214 HAD-like domain YPA_1860 IPR023298 P-type ATPase, transmembrane domain YPA_1860 IPR023299 P-type ATPase, cytoplasmic domain N YPA_1860 IPR036412 YPA_1860 YPA_1861 IPR003416 MgtC/SapB/SrpB transporter YPA_1862 IPR003122 Chemotaxis methyl-accepting receptor, ligand-binding YPA_1862 IPR003660 HAMP linker domain YPA_1862 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain YPA_1862 IPR004090 Chemotaxis methyl-accepting receptor YPA_1862 IPR004091 Chemotaxis methyl-accepting receptor, methyl-accepting site YPA_1862 IPR035440 YPA_1862 YPA_1863 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain YPA_1864 IPR019717 Dextransucrase DSRB YPA_1865 IPR002059 Cold-shock protein, DNA-binding YPA_1865 IPR011129 Cold shock protein YPA_1865 IPR012156 Cold shock, CspA YPA_1865 IPR012340 Nucleic acid-binding, OB-fold YPA_1865 IPR019844 Cold-shock conserved site YPA_1866 IPR001270 ClpA/B family YPA_1866 IPR002611 IstB-like ATP-binding protein YPA_1866 IPR003593 AAA+ ATPase domain YPA_1866 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPA_1866 IPR028350 DNA replication protein DnaC/insertion sequence putative ATP-binding protein YPA_1867 IPR001584 Integrase, catalytic core YPA_1867 IPR006120 Resolvase, HTH domain YPA_1867 IPR009057 Homeodomain-like YPA_1867 IPR012337 Ribonuclease H-like domain YPA_1868 IPR004199 Beta galactosidase small chain/ domain 5 YPA_1868 IPR006101 Glycoside hydrolase, family 2 YPA_1868 IPR006102 Glycoside hydrolase, family 2, immunoglobulin-like beta-sandwich YPA_1868 IPR006103 Glycoside hydrolase, family 2, TIM barrel YPA_1868 IPR006104 Glycosyl hydrolases family 2, sugar binding domain YPA_1868 IPR008979 Galactose-binding domain-like YPA_1868 IPR011013 Galactose mutarotase-like domain YPA_1868 IPR013783 Immunoglobulin-like fold YPA_1868 IPR014718 Glycoside hydrolase-type carbohydrate-binding, subgroup YPA_1868 IPR017853 Glycoside hydrolase, superfamily YPA_1868 IPR023230 Glycoside hydrolase, family 2, conserved site YPA_1868 IPR023232 Glycoside hydrolase, family 2, active site YPA_1868 IPR023933 Glycoside hydrolase, family 2, beta-galactosidase YPA_1868 IPR032312 YPA_1868 YPA_1868 IPR036156 YPA_1868 YPA_1869 IPR011032 GroES (chaperonin 10)-like YPA_1869 IPR013149 Alcohol dehydrogenase, C-terminal YPA_1869 IPR013154 Alcohol dehydrogenase GroES-like YPA_1869 IPR014189 Quinone oxidoreductase PIG3 YPA_1869 IPR020843 Polyketide synthase, enoylreductase YPA_1869 IPR036291 YPA_1869 YPA_1870 IPR019713 Inner membrane protein YlaC YPA_1872 IPR000485 AsnC-type HTH domain YPA_1872 IPR011008 Dimeric alpha-beta barrel YPA_1872 IPR019887 Transcription regulator AsnC-type, C-terminal YPA_1872 IPR019888 Transcription regulator AsnC-type YPA_1872 IPR036388 YPA_1872 YPA_1872 IPR036390 YPA_1872 YPA_1873 IPR021266 Kdo hydroxylase YPA_1874 IPR017704 Putative selenium-binding protein YdfZ YPA_1875 IPR000560 Histidine phosphatase superfamily, clade-2 YPA_1875 IPR029033 Histidine phosphatase superfamily YPA_1875 IPR033379 YPA_1875 YPA_1878 IPR002577 Helix-turn-helix, HxlR type YPA_1878 IPR036388 YPA_1878 YPA_1878 IPR036390 YPA_1878 YPA_1879 IPR008030 NmrA-like domain YPA_1879 IPR036291 YPA_1879 YPA_1880 IPR000014 PAS domain YPA_1880 IPR001610 PAC motif YPA_1880 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain YPA_1880 IPR004090 Chemotaxis methyl-accepting receptor YPA_1880 IPR013655 PAS fold-3 YPA_1880 IPR035965 YPA_1880 YPA_1882 IPR000843 Transcription regulator HTH, LacI YPA_1882 IPR001761 Periplasmic binding protein/LacI sugar binding domain YPA_1882 IPR010982 Lambda repressor-like, DNA-binding domain YPA_1882 IPR028082 Periplasmic binding protein-like I YPA_1883 IPR004439 Isocitrate dehydrogenase NADP-dependent, dimeric, prokaryotic YPA_1883 IPR019818 Isocitrate/isopropylmalate dehydrogenase, conserved site YPA_1883 IPR024084 Isopropylmalate dehydrogenase-like domain YPA_1884 IPR000748 Pseudouridine synthase, RsuA/RluB/E/F YPA_1884 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F YPA_1884 IPR018496 Pseudouridine synthase, RsuA/RluB/E/F, conserved site YPA_1884 IPR020103 Pseudouridine synthase, catalytic domain YPA_1885 IPR000086 NUDIX hydrolase domain YPA_1885 IPR015797 NUDIX hydrolase domain-like YPA_1885 IPR020084 NUDIX hydrolase, conserved site YPA_1885 IPR020476 NUDIX hydrolase YPA_1886 IPR004506 tRNA-specific 2-thiouridylase YPA_1886 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold YPA_1886 IPR023382 Adenine nucleotide alpha hydrolase-like domains YPA_1887 IPR007451 Uncharacterised protein family UPF0274 YPA_1887 IPR035932 YPA_1887 YPA_1888 IPR000362 Fumarate lyase family YPA_1888 IPR004769 Adenylosuccinate lyase YPA_1888 IPR008948 L-Aspartase-like YPA_1888 IPR013539 Adenylosuccinate lyase PurB, C-terminal YPA_1888 IPR020557 Fumarate lyase, conserved site YPA_1888 IPR022761 Fumarate lyase, N-terminal YPA_1888 IPR024083 Fumarase/histidase, N-terminal YPA_1889 IPR011250 Outer membrane protein/outer membrane enzyme PagP , beta-barrel YPA_1889 IPR027385 Outer membrane protein beta-barrel YPA_1890 IPR001789 Signal transduction response regulator, receiver domain YPA_1890 IPR001867 Signal transduction response regulator, C-terminal YPA_1890 IPR011006 CheY-like superfamily YPA_1890 IPR036388 YPA_1890 YPA_1891 IPR003594 Histidine kinase-like ATPase, C-terminal domain YPA_1891 IPR003661 Signal transduction histidine kinase EnvZ-like, dimerisation/phosphoacceptor domain YPA_1891 IPR004358 Signal transduction histidine kinase-related protein, C-terminal YPA_1891 IPR015014 PhoQ Sensor YPA_1891 IPR036097 YPA_1891 YPA_1891 IPR036890 YPA_1891 YPA_1891 IPR038429 YPA_1891 YPA_1892 IPR003347 JmjC domain YPA_1893 IPR001261 ArgE/DapE/ACY1/CPG2/YscS, conserved site YPA_1893 IPR002933 Peptidase M20 YPA_1893 IPR010161 Peptidase M20B, tripeptide aminopeptidase YPA_1893 IPR011650 Peptidase M20, dimerisation domain YPA_1893 IPR036264 YPA_1893 YPA_1894 IPR003000 Sirtuin family YPA_1894 IPR026591 Sirtuin family, catalytic core small domain YPA_1894 IPR027546 Sirtuin, class III YPA_1894 IPR029035 DHS-like NAD/FAD-binding domain YPA_1895 IPR000600 ROK YPA_1896 IPR000600 ROK YPA_1897 IPR003838 Permease FtsX-like YPA_1897 IPR011925 Lipoprotein releasing system, transmembrane protein, LolC/E family YPA_1897 IPR011926 Lipoprotein releasing system, transmembrane protein LolE YPA_1897 IPR025857 MacB-like periplasmic core domain YPA_1898 IPR003439 ABC transporter-like YPA_1898 IPR003593 AAA+ ATPase domain YPA_1898 IPR011924 Lipoprotein releasing system, ATP-binding protein YPA_1898 IPR017871 ABC transporter, conserved site YPA_1898 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPA_1899 IPR003838 Permease FtsX-like YPA_1899 IPR011925 Lipoprotein releasing system, transmembrane protein, LolC/E family YPA_1899 IPR025857 MacB-like periplasmic core domain YPA_1900 IPR001650 Helicase, C-terminal YPA_1900 IPR003711 CarD-like/TRCF domain YPA_1900 IPR004576 Transcription-repair coupling factor YPA_1900 IPR005118 Transcription-repair-coupling factor, C-terminal domain YPA_1900 IPR011545 DEAD/DEAH box helicase domain YPA_1900 IPR014001 Helicase, superfamily 1/2, ATP-binding domain YPA_1900 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPA_1900 IPR036101 YPA_1900 YPA_1900 IPR037235 YPA_1900 YPA_1901 IPR008816 Glycine zipper 2TM domain YPA_1902 IPR001207 Transposase, mutator type YPA_1905 IPR023753 Pyridine nucleotide-disulphide oxidoreductase, FAD/NAD(P)-binding domain YPA_1905 IPR036188 YPA_1905 YPA_1906 IPR008886 Uncharacterised protein family UPF0227/Esterase YqiA YPA_1906 IPR022987 Uncharacterised protein family UPF0227 YPA_1906 IPR029058 Alpha/Beta hydrolase fold YPA_1907 IPR001764 Glycoside hydrolase, family 3, N-terminal YPA_1907 IPR017853 Glycoside hydrolase, superfamily YPA_1907 IPR019800 Glycoside hydrolase, family 3, active site YPA_1907 IPR022956 Beta-hexosaminidase, bacterial YPA_1907 IPR036962 YPA_1907 YPA_1908 IPR002575 Aminoglycoside phosphotransferase YPA_1908 IPR011009 Protein kinase-like domain YPA_1908 IPR014093 Thiamine kinase YPA_1909 IPR014094 Penicillin-binding protein activator LpoB YPA_1910 IPR010824 Protein of unknown function DUF1425 YPA_1910 IPR038483 YPA_1910 YPA_1911 IPR001310 Histidine triad (HIT) protein YPA_1911 IPR019808 Histidine triad, conserved site YPA_1911 IPR036265 YPA_1911 YPA_1912 IPR013708 Shikimate dehydrogenase substrate binding, N-terminal YPA_1912 IPR036291 YPA_1912 YPA_1914 IPR001270 ClpA/B family YPA_1914 IPR002611 IstB-like ATP-binding protein YPA_1914 IPR003593 AAA+ ATPase domain YPA_1914 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPA_1914 IPR028350 DNA replication protein DnaC/insertion sequence putative ATP-binding protein YPA_1915 IPR001584 Integrase, catalytic core YPA_1915 IPR006120 Resolvase, HTH domain YPA_1915 IPR009057 Homeodomain-like YPA_1915 IPR012337 Ribonuclease H-like domain YPA_1916 IPR002686 Transposase IS200-like YPA_1916 IPR036515 YPA_1916 YPA_1917 IPR001996 Phosphotransferase system, IIB component, type 1 YPA_1917 IPR003352 Phosphotransferase system, EIIC YPA_1917 IPR011299 PTS system glucose-specific IIBC component YPA_1917 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site YPA_1917 IPR036878 YPA_1917 YPA_1918 IPR001130 TatD family YPA_1918 IPR015991 Uncharacterised deoxyribonuclease TatD-type YPA_1918 IPR018228 Deoxyribonuclease, TatD-related, conserved site YPA_1918 IPR032466 YPA_1918 YPA_1919 IPR004622 DNA polymerase III, delta prime subunit YPA_1919 IPR008921 DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal YPA_1919 IPR015199 DNA polymerase III, delta subunit, C-terminal YPA_1919 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPA_1920 IPR018094 Thymidylate kinase YPA_1920 IPR018095 Thymidylate kinase, conserved site YPA_1920 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPA_1920 IPR039430 YPA_1920 YPA_1921 IPR003770 Uncharacterised protein family UPF0755, YceG-like YPA_1922 IPR001544 Aminotransferase, class IV YPA_1922 IPR017824 Aminodeoxychorismate lyase, class IV YPA_1922 IPR018300 Aminotransferase, class IV, conserved site YPA_1922 IPR036038 YPA_1922 YPA_1923 IPR002686 Transposase IS200-like YPA_1923 IPR036515 YPA_1923 YPA_1924 IPR014030 Beta-ketoacyl synthase, N-terminal YPA_1924 IPR014031 Beta-ketoacyl synthase, C-terminal YPA_1924 IPR016039 Thiolase-like YPA_1924 IPR017568 3-oxoacyl-[acyl-carrier-protein] synthase 2 YPA_1924 IPR018201 Beta-ketoacyl synthase, active site YPA_1924 IPR020841 Polyketide synthase, beta-ketoacyl synthase domain YPA_1925 IPR003231 Acyl carrier protein (ACP) YPA_1925 IPR006162 Phosphopantetheine attachment site YPA_1925 IPR009081 Acyl carrier protein-like YPA_1925 IPR036736 YPA_1925 YPA_1926 IPR002347 Glucose/ribitol dehydrogenase YPA_1926 IPR011284 3-oxoacyl-(acyl-carrier-protein) reductase YPA_1926 IPR020904 Short-chain dehydrogenase/reductase, conserved site YPA_1926 IPR036291 YPA_1926 YPA_1927 IPR001227 Acyl transferase domain YPA_1927 IPR004410 Malonyl CoA-acyl carrier protein transacylase, FabD-type YPA_1927 IPR014043 Acyl transferase YPA_1927 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase YPA_1927 IPR016036 Malonyl-CoA ACP transacylase, ACP-binding YPA_1927 IPR020801 Polyketide synthase, acyl transferase domain YPA_1927 IPR024925 Malonyl CoA-acyl carrier protein transacylase YPA_1928 IPR004655 3-oxoacyl-[acyl-carrier-protein] synthase 3 YPA_1928 IPR013747 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C-terminal YPA_1928 IPR013751 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III YPA_1928 IPR016039 Thiolase-like YPA_1929 IPR003664 Fatty acid synthesis PlsX protein YPA_1929 IPR012281 Phospholipid biosynthesis protein, PlsX-like YPA_1930 IPR002677 Ribosomal protein L32p YPA_1930 IPR011332 Zinc-binding ribosomal protein YPA_1931 IPR003772 Protein of unknown function DUF177 YPA_1932 IPR003697 Maf-like protein YPA_1932 IPR029001 Inosine triphosphate pyrophosphatase-like YPA_1933 IPR002686 Transposase IS200-like YPA_1933 IPR036515 YPA_1933 YPA_1934 IPR002942 RNA-binding S4 domain YPA_1934 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F YPA_1934 IPR006224 Pseudouridine synthase, RluC/RluD, conserved site YPA_1934 IPR006225 Pseudouridine synthase, RluC/RluD YPA_1934 IPR020103 Pseudouridine synthase, catalytic domain YPA_1934 IPR036986 YPA_1934 YPA_1935 IPR003029 Ribosomal protein S1, RNA-binding domain YPA_1935 IPR004659 Ribonuclease E/G YPA_1935 IPR012340 Nucleic acid-binding, OB-fold YPA_1935 IPR019307 RNA-binding protein AU-1/Ribonuclease E/G YPA_1935 IPR021968 Polyribonucleotide phosphorylase C-terminal YPA_1935 IPR022967 RNA-binding domain, S1 YPA_1935 IPR028878 Ribonuclease E YPA_1937 IPR001207 Transposase, mutator type YPA_1938 IPR001584 Integrase, catalytic core YPA_1939 IPR007138 Antibiotic biosynthesis monooxygenase-like domain YPA_1939 IPR011008 Dimeric alpha-beta barrel YPA_1940 IPR002195 Dihydroorotase, conserved site YPA_1940 IPR004721 Dihydroorotase homodimeric type YPA_1940 IPR006680 Amidohydrolase 1 YPA_1940 IPR032466 YPA_1940 YPA_1941 IPR010391 DNA damage-inducible protein DinI-like YPA_1941 IPR036687 YPA_1941 YPA_1942 IPR025730 Biofilm regulator BssS YPA_1943 IPR001207 Transposase, mutator type YPA_1944 IPR001207 Transposase, mutator type YPA_1945 IPR006076 FAD dependent oxidoreductase YPA_1945 IPR023493 N-methyl-L-tryptophan oxidase MTOX YPA_1945 IPR036188 YPA_1945 YPA_1946 IPR001207 Transposase, mutator type YPA_1947 IPR000792 Transcription regulator LuxR, C-terminal YPA_1947 IPR016032 Signal transduction response regulator, C-terminal effector YPA_1947 IPR036388 YPA_1947 YPA_1948 IPR002549 Uncharacterised protein family UPF0118 YPA_1949 IPR001763 Rhodanese-like domain YPA_1949 IPR022111 Protein of unknown function DUF3650 YPA_1949 IPR036873 YPA_1949 YPA_1953 IPR000620 Drug/metabolite transporter YPA_1954 IPR001690 Autoinducer synthesis protein YPA_1954 IPR016181 Acyl-CoA N-acyltransferase YPA_1954 IPR018311 Autoinducer synthesis, conserved site YPA_1955 IPR000792 Transcription regulator LuxR, C-terminal YPA_1955 IPR005143 Transcription factor LuxR-like, autoinducer-binding domain YPA_1955 IPR016032 Signal transduction response regulator, C-terminal effector YPA_1955 IPR036388 YPA_1955 YPA_1955 IPR036693 YPA_1955 YPA_1956 IPR000847 Transcription regulator HTH, LysR YPA_1956 IPR005119 LysR, substrate-binding YPA_1956 IPR036388 YPA_1956 YPA_1956 IPR036390 YPA_1956 YPA_1957 IPR005828 General substrate transporter YPA_1957 IPR005829 Sugar transporter, conserved site YPA_1957 IPR036259 YPA_1957 YPA_1958 IPR014826 Formaldehyde-activating enzyme YPA_1958 IPR020568 Ribosomal protein S5 domain 2-type fold YPA_1958 IPR037075 YPA_1958 YPA_1959 IPR023210 NADP-dependent oxidoreductase domain YPA_1959 IPR036812 YPA_1959 YPA_1960 IPR013396 CRISPR-associated protein Csy4 YPA_1961 IPR013399 CRISPR-associated protein Csy3 YPA_1962 IPR013398 CRISPR-associated protein Csy2 YPA_1963 IPR013397 CRISPR-associated protein Csy1 YPA_1964 IPR013395 Helicase Cas3, CRISPR-associated, Yersinia-type YPA_1964 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPA_1964 IPR038257 YPA_1964 YPA_1965 IPR002729 CRISPR-associated protein Cas1 YPA_1965 IPR019857 CRISPR-associated protein Cas1, YPEST subtype YPA_1966 IPR006685 Mechanosensitive ion channel MscS YPA_1966 IPR010920 Like-Sm (LSM) domain YPA_1966 IPR023408 YPA_1966 YPA_1968 IPR011250 Outer membrane protein/outer membrane enzyme PagP , beta-barrel YPA_1969 IPR015045 Protein of unknown function DUF1861 YPA_1969 IPR023296 Glycosyl hydrolase, five-bladed beta-propellor domain YPA_1970 IPR007184 Mannoside phosphorylase YPA_1970 IPR023296 Glycosyl hydrolase, five-bladed beta-propellor domain YPA_1971 IPR000515 MetI-like domain YPA_1971 IPR035906 YPA_1971 YPA_1972 IPR000515 MetI-like domain YPA_1972 IPR035906 YPA_1972 YPA_1973 IPR006059 Bacterial extracellular solute-binding, family 1 YPA_1974 IPR000843 Transcription regulator HTH, LacI YPA_1974 IPR010982 Lambda repressor-like, DNA-binding domain YPA_1974 IPR028082 Periplasmic binding protein-like I YPA_1975 IPR005841 Alpha-D-phosphohexomutase superfamily YPA_1975 IPR005843 Alpha-D-phosphohexomutase, C-terminal YPA_1975 IPR005844 Alpha-D-phosphohexomutase, alpha/beta/alpha domain I YPA_1975 IPR005845 Alpha-D-phosphohexomutase, alpha/beta/alpha domain II YPA_1975 IPR005846 Alpha-D-phosphohexomutase, alpha/beta/alpha domain III YPA_1975 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III YPA_1975 IPR016066 Alpha-D-phosphohexomutase, conserved site YPA_1975 IPR036900 YPA_1975 YPA_1976 IPR003439 ABC transporter-like YPA_1976 IPR003593 AAA+ ATPase domain YPA_1976 IPR008995 Molybdate/tungstate binding, C-terminal YPA_1976 IPR013611 Transport-associated OB, type 2 YPA_1976 IPR017871 ABC transporter, conserved site YPA_1976 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPA_1980 IPR025459 Protein of unknown function DUF4279 YPA_1983 IPR006914 VENN motif-containing domain YPA_1985 IPR016630 Uncharacterised conserved protein UCP015278 YPA_1986 IPR006914 VENN motif-containing domain YPA_1986 IPR008619 Filamentous haemagglutinin repeat YPA_1986 IPR008638 Filamentous haemagglutinin, N-terminal YPA_1986 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat YPA_1986 IPR011050 Pectin lyase fold/virulence factor YPA_1986 IPR012334 Pectin lyase fold YPA_1986 IPR025157 Haemagluttinin repeat YPA_1987 IPR005565 Haemolysin activator HlyB YPA_1987 IPR013686 Polypeptide-transport-associated, ShlB-type YPA_1987 IPR027282 Two partner secretion pathway transporter YPA_1987 IPR035251 YPA_1987 YPA_1988 IPR000951 Phthalate dioxygenase reductase YPA_1988 IPR001041 2Fe-2S ferredoxin-type domain YPA_1988 IPR001433 Oxidoreductase FAD/NAD(P)-binding YPA_1988 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site YPA_1988 IPR008333 Oxidoreductase, FAD-binding domain YPA_1988 IPR012675 Beta-grasp domain YPA_1988 IPR017938 Riboflavin synthase-like beta-barrel YPA_1988 IPR036010 YPA_1988 YPA_1988 IPR039003 YPA_1988 YPA_1988 IPR039261 YPA_1988 YPA_1989 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit YPA_1989 IPR015879 Aromatic-ring-hydroxylating dioxygenase, alpha subunit, C-terminal domain YPA_1989 IPR015881 Aromatic-ring-hydroxylating dioxygenase, 2Fe-2S-binding site YPA_1989 IPR017941 Rieske [2Fe-2S] iron-sulphur domain YPA_1989 IPR036922 YPA_1989 YPA_1989 IPR039004 YPA_1989 YPA_1990 IPR000060 BCCT transporter family YPA_1990 IPR018093 BCCT transporter, conserved site YPA_1991 IPR011829 Tartrate dehydrogenase YPA_1991 IPR019818 Isocitrate/isopropylmalate dehydrogenase, conserved site YPA_1991 IPR024084 Isopropylmalate dehydrogenase-like domain YPA_1992 IPR000847 Transcription regulator HTH, LysR YPA_1992 IPR005119 LysR, substrate-binding YPA_1992 IPR036388 YPA_1992 YPA_1992 IPR036390 YPA_1992 YPA_1993 IPR000843 Transcription regulator HTH, LacI YPA_1993 IPR010982 Lambda repressor-like, DNA-binding domain YPA_1993 IPR025997 Periplasmic binding protein domain YPA_1993 IPR028082 Periplasmic binding protein-like I YPA_1994 IPR001851 ABC transporter, permease YPA_1995 IPR003439 ABC transporter-like YPA_1995 IPR003593 AAA+ ATPase domain YPA_1995 IPR017871 ABC transporter, conserved site YPA_1995 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPA_1996 IPR025997 Periplasmic binding protein domain YPA_1996 IPR028082 Periplasmic binding protein-like I YPA_1997 IPR011032 GroES (chaperonin 10)-like YPA_1997 IPR013149 Alcohol dehydrogenase, C-terminal YPA_1997 IPR036291 YPA_1997 YPA_1999 IPR000620 Drug/metabolite transporter YPA_2000 IPR000182 GNAT domain YPA_2000 IPR016181 Acyl-CoA N-acyltransferase YPA_2001 IPR023149 Trans-aconitate 2-methyltransferase, C-terminal YPA_2001 IPR023506 Trans-aconitate 2-methyltransferase YPA_2001 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase-like YPA_2002 IPR002177 DNA-binding protein Dps YPA_2002 IPR008331 Ferritin/DPS protein domain YPA_2002 IPR009078 Ferritin-like superfamily YPA_2002 IPR012347 Ferritin-related YPA_2002 IPR023067 DNA protection during starvation protein, gammaproteobacteria YPA_2002 IPR023188 DNA-binding protein Dps, conserved site YPA_2003 IPR003848 Domain of unknown function DUF218 YPA_2003 IPR011990 Tetratricopeptide-like helical domain YPA_2004 IPR001320 Ionotropic glutamate receptor YPA_2004 IPR001638 Extracellular solute-binding protein, family 3 YPA_2004 IPR018313 Extracellular solute-binding protein, family 3, conserved site YPA_2005 IPR000515 MetI-like domain YPA_2005 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain, His/Glu/Gln/Arg/opine family YPA_2005 IPR035906 YPA_2005 YPA_2006 IPR003439 ABC transporter-like YPA_2006 IPR003593 AAA+ ATPase domain YPA_2006 IPR017871 ABC transporter, conserved site YPA_2006 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPA_2006 IPR030679 YPA_2006 YPA_2007 IPR000014 PAS domain YPA_2007 IPR001610 PAC motif YPA_2007 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain YPA_2007 IPR004090 Chemotaxis methyl-accepting receptor YPA_2007 IPR013656 PAS fold-4 YPA_2007 IPR035965 YPA_2007 YPA_2008 IPR001584 Integrase, catalytic core YPA_2008 IPR006120 Resolvase, HTH domain YPA_2008 IPR009057 Homeodomain-like YPA_2008 IPR012337 Ribonuclease H-like domain YPA_2009 IPR001270 ClpA/B family YPA_2009 IPR002611 IstB-like ATP-binding protein YPA_2009 IPR003593 AAA+ ATPase domain YPA_2009 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPA_2009 IPR028350 DNA replication protein DnaC/insertion sequence putative ATP-binding protein YPA_2011 IPR010286 Ribosomal RNA large subunit methyltransferase F-like YPA_2011 IPR016909 Ribosomal RNA large subunit methyltransferase F YPA_2011 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase-like YPA_2012 IPR010854 Domain of unknown function DUF1471 YPA_2012 IPR025543 Dodecin-like YPA_2012 IPR036275 YPA_2012 YPA_2014 IPR000312 Glycosyl transferase, family 3 YPA_2014 IPR017459 Glycosyl transferase family 3, N-terminal domain YPA_2014 IPR035902 YPA_2014 YPA_2014 IPR036320 YPA_2014 YPA_2015 IPR000873 AMP-dependent synthetase/ligase YPA_2015 IPR010192 2-succinylbenzoate--CoA ligase YPA_2015 IPR020845 AMP-binding, conserved site YPA_2016 IPR010196 O-succinylbenzoic acid (OSB) synthetase YPA_2016 IPR013342 Mandelate racemase/muconate lactonizing enzyme, C-terminal YPA_2016 IPR029017 Enolase N-terminal domain-like YPA_2016 IPR029065 Enolase C-terminal domain-like YPA_2016 IPR036849 YPA_2016 YPA_2017 IPR001753 Crotonase superfamily YPA_2017 IPR010198 1,4-Dihydroxy-2-naphthoyl-CoA synthase YPA_2017 IPR014748 Crontonase, C-terminal YPA_2017 IPR018376 Enoyl-CoA hydratase/isomerase, conserved site YPA_2017 IPR029045 ClpP/crotonase-like domain YPA_2018 IPR000073 Alpha/beta hydrolase fold-1 YPA_2018 IPR022485 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase YPA_2018 IPR029058 Alpha/Beta hydrolase fold YPA_2019 IPR004433 Menaquinone biosynthesis protein MenD YPA_2019 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding YPA_2019 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain YPA_2019 IPR029061 Thiamin diphosphate-binding fold YPA_2019 IPR032264 YPA_2019 YPA_2020 IPR004561 Isochorismate synthase YPA_2020 IPR005801 ADC synthase YPA_2020 IPR015890 Chorismate binding, C-terminal YPA_2020 IPR034681 YPA_2020 YPA_2022 IPR010279 Protein of unknown function DUF883, ElaB YPA_2025 IPR000581 Dihydroxy-acid/6-phosphogluconate dehydratase YPA_2025 IPR004786 6-phosphogluconate dehydratase YPA_2025 IPR020558 Dihydroxy-acid/6-phosphogluconate dehydratase, conserved site YPA_2025 IPR037237 YPA_2025 YPA_2026 IPR005624 Domain of unknown function DUF336 YPA_2026 IPR010371 Uncharacterised protein family UPF0303 YPA_2026 IPR038084 YPA_2026 YPA_2027 IPR011701 Major facilitator superfamily YPA_2027 IPR036259 YPA_2027 YPA_2028 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain YPA_2028 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain YPA_2028 IPR036291 YPA_2028 YPA_2029 IPR000843 Transcription regulator HTH, LacI YPA_2029 IPR001761 Periplasmic binding protein/LacI sugar binding domain YPA_2029 IPR010982 Lambda repressor-like, DNA-binding domain YPA_2029 IPR028082 Periplasmic binding protein-like I YPA_2030 IPR003790 Protein of unknown function DUF187 YPA_2030 IPR013785 Aldolase-type TIM barrel YPA_2030 IPR017853 Glycoside hydrolase, superfamily YPA_2031 IPR002347 Glucose/ribitol dehydrogenase YPA_2031 IPR020904 Short-chain dehydrogenase/reductase, conserved site YPA_2031 IPR036291 YPA_2031 YPA_2032 IPR006001 Carbohydrate kinase, thermoresistant glucokinase YPA_2032 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPA_2032 IPR031322 YPA_2032 YPA_2033 IPR004375 Conserved hypothetical protein CHP00022 YPA_2033 IPR037012 YPA_2033 YPA_2035 IPR001750 NADH:ubiquinone/plastoquinone oxidoreductase YPA_2035 IPR010096 NAD(P)H-quinone oxidoreductase, subunit N/subunit 2 YPA_2036 IPR001750 NADH:ubiquinone/plastoquinone oxidoreductase YPA_2036 IPR003918 NADH:ubiquinone oxidoreductase YPA_2036 IPR010227 NADH-quinone oxidoreductase, chain M/4 YPA_2037 IPR001516 NADH:ubiquinone oxidoreductase, chain 5/L, N-terminal YPA_2037 IPR001750 NADH:ubiquinone/plastoquinone oxidoreductase YPA_2037 IPR003945 NADH-plastoquinone oxidoreductase, chain 5 YPA_2037 IPR018393 NADH-plastoquinone oxidoreductase, chain 5 subgroup YPA_2038 IPR001133 NADH-ubiquinone oxidoreductase chain 4L/K YPA_2038 IPR039428 YPA_2038 YPA_2039 IPR001457 NADH:ubiquinone/plastoquinone oxidoreductase, chain 6 YPA_2040 IPR010226 NADH-quinone oxidoreductase, chain I YPA_2040 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain YPA_2040 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site YPA_2041 IPR001694 NADH:ubiquinone oxidoreductase, subunit 1/F420H2 oxidoreductase subunit H YPA_2041 IPR018086 NADH:ubiquinone oxidoreductase, subunit 1, conserved site YPA_2042 IPR000283 NADH:ubiquinone oxidoreductase, 75kDa subunit, conserved site YPA_2042 IPR006656 Molybdopterin oxidoreductase YPA_2042 IPR006657 Molydopterin dinucleotide-binding domain YPA_2042 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain YPA_2042 IPR009010 Aspartate decarboxylase-like domain YPA_2042 IPR010228 NADH:ubiquinone oxidoreductase, subunit G YPA_2042 IPR019574 NADH:ubiquinone oxidoreductase, subunit G, iron-sulphur binding YPA_2042 IPR036010 YPA_2042 YPA_2043 IPR001949 NADH:ubiquinone oxidoreductase, 51kDa subunit, conserved site YPA_2043 IPR011537 NADH ubiquinone oxidoreductase, F subunit YPA_2043 IPR011538 NADH:ubiquinone oxidoreductase, 51kDa subunit YPA_2043 IPR019575 NADH ubiquinone oxidoreductase, F subunit, iron sulphur binding YPA_2043 IPR037207 YPA_2043 YPA_2043 IPR037225 YPA_2043 YPA_2044 IPR002023 NADH-quinone oxidoreductase subunit E-like YPA_2044 IPR036249 YPA_2044 YPA_2045 IPR001135 NADH-quinone oxidoreductase, subunit D YPA_2045 IPR001268 NADH:ubiquinone oxidoreductase, 30kDa subunit YPA_2045 IPR010218 NADH dehydrogenase, subunit C YPA_2045 IPR014029 NADH:ubiquinone oxidoreductase, 49kDa subunit, conserved site YPA_2045 IPR022885 NAD(P)H-quinone oxidoreductase subunit D/H YPA_2045 IPR023062 NADH dehydrogenase, subunit CD YPA_2045 IPR029014 NiFe hydrogenase-like YPA_2045 IPR037232 YPA_2045 YPA_2045 IPR038290 YPA_2045 YPA_2046 IPR006137 NADH:ubiquinone oxidoreductase-like, 20kDa subunit YPA_2046 IPR006138 NADH-ubiquinone oxidoreductase, 20 Kd subunit YPA_2047 IPR000440 NADH:ubiquinone/plastoquinone oxidoreductase, chain 3 YPA_2047 IPR023043 NAD(P)H-quinone oxidoreductase subunit 3, bacterial/plastid YPA_2047 IPR038430 YPA_2047 YPA_2048 IPR000847 Transcription regulator HTH, LysR YPA_2048 IPR005119 LysR, substrate-binding YPA_2048 IPR036388 YPA_2048 YPA_2048 IPR036390 YPA_2048 YPA_2049 IPR004839 Aminotransferase, class I/classII YPA_2049 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 YPA_2049 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 YPA_2049 IPR015424 Pyridoxal phosphate-dependent transferase YPA_2050 IPR003607 HD/PDEase domain YPA_2050 IPR006674 HD domain YPA_2050 IPR022971 5'-deoxynucleotidase YfbR YPA_2051 IPR004680 Citrate transporter-like domain YPA_2051 IPR006037 Regulator of K+ conductance, C-terminal YPA_2051 IPR031312 YPA_2051 YPA_2051 IPR036721 YPA_2051 YPA_2052 IPR006439 HAD hydrolase, subfamily IA YPA_2052 IPR023198 Phosphoglycolate phosphatase, domain 2 YPA_2052 IPR023214 HAD-like domain YPA_2052 IPR036412 YPA_2052 YPA_2053 IPR005587 Uncharacterised protein family UPF0304, YfbU YPA_2053 IPR023145 YfbU, helix-hairpin domain YPA_2053 IPR023146 YfbU, alpha-helical bundle domain YPA_2054 IPR007334 Uncharacterised protein family UPF0208 YPA_2055 IPR000890 Aliphatic acid kinase, short-chain YPA_2055 IPR004372 Acetate/Proprionate kinase YPA_2055 IPR023865 Aliphatic acid kinase, short-chain, conserved site YPA_2056 IPR002505 Phosphate acetyl/butaryl transferase YPA_2056 IPR004614 Phosphate acetyltransferase YPA_2056 IPR010766 DRTGG YPA_2056 IPR016475 Phosphate acetyltransferase, bacteria YPA_2056 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPA_2056 IPR028979 HPr(Ser) kinase/phosphorylase, N-terminal domain like YPA_2057 IPR000843 Transcription regulator HTH, LacI YPA_2057 IPR010982 Lambda repressor-like, DNA-binding domain YPA_2057 IPR028082 Periplasmic binding protein-like I YPA_2058 IPR002178 PTS EIIA type-2 domain YPA_2058 IPR016152 Phosphotransferase/anion transporter YPA_2059 IPR003501 Phosphotransferase system, EIIB component, type 2/3 YPA_2059 IPR036095 YPA_2059 YPA_2060 IPR004703 Phosphotransferase system, sugar-specific permease component YPA_2061 IPR000086 NUDIX hydrolase domain YPA_2061 IPR015797 NUDIX hydrolase domain-like YPA_2061 IPR024195 NUDIX hydrolase, YfcD, predicted YPA_2062 IPR000979 Phosphodiesterase MJ0936/Vps29 YPA_2062 IPR020935 Phosphodiesterase YfcE, conserved site YPA_2062 IPR024654 Calcineurin-like phosphoesterase domain, lpxH type YPA_2062 IPR029052 Metallo-dependent phosphatase-like YPA_2063 IPR001633 EAL domain YPA_2063 IPR035919 YPA_2063 YPA_2064 IPR001509 NAD-dependent epimerase/dehydratase, N-terminal domain YPA_2064 IPR010099 Sugar nucleotide epimerase YfcH,-like putative YPA_2064 IPR013549 Domain of unknown function DUF1731 YPA_2064 IPR036291 YPA_2064 YPA_2065 IPR003439 ABC transporter-like YPA_2065 IPR003593 AAA+ ATPase domain YPA_2065 IPR017871 ABC transporter, conserved site YPA_2065 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPA_2065 IPR030679 YPA_2065 YPA_2066 IPR000515 MetI-like domain YPA_2066 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain, His/Glu/Gln/Arg/opine family YPA_2066 IPR035906 YPA_2066 YPA_2067 IPR000515 MetI-like domain YPA_2067 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain, His/Glu/Gln/Arg/opine family YPA_2067 IPR035906 YPA_2067 YPA_2068 IPR001638 Extracellular solute-binding protein, family 3 YPA_2068 IPR005768 Lysine-arginine-ornithine-binding periplasmic protein YPA_2068 IPR018313 Extracellular solute-binding protein, family 3, conserved site YPA_2069 IPR001584 Integrase, catalytic core YPA_2069 IPR006120 Resolvase, HTH domain YPA_2069 IPR009057 Homeodomain-like YPA_2069 IPR012337 Ribonuclease H-like domain YPA_2070 IPR001270 ClpA/B family YPA_2070 IPR002611 IstB-like ATP-binding protein YPA_2070 IPR003593 AAA+ ATPase domain YPA_2070 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPA_2070 IPR028350 DNA replication protein DnaC/insertion sequence putative ATP-binding protein YPA_2071 IPR003382 Flavoprotein YPA_2071 IPR004507 Decarboxylase UbiX/Pad1 YPA_2071 IPR036551 YPA_2071 YPA_2072 IPR000836 Phosphoribosyltransferase domain YPA_2072 IPR005854 Amidophosphoribosyl transferase YPA_2072 IPR029055 Nucleophile aminohydrolases, N-terminal YPA_2072 IPR029057 Phosphoribosyltransferase-like YPA_2073 IPR003825 Colicin V production, CvpA YPA_2074 IPR007730 Sporulation-related domain YPA_2074 IPR032898 YPA_2074 YPA_2074 IPR036680 YPA_2074 YPA_2075 IPR001645 Folylpolyglutamate synthetase YPA_2075 IPR004101 Mur ligase, C-terminal YPA_2075 IPR013221 Mur ligase, central YPA_2075 IPR018109 Folylpolyglutamate synthetase, conserved site YPA_2075 IPR036565 YPA_2075 YPA_2075 IPR036615 YPA_2075 YPA_2076 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit YPA_2076 IPR029045 ClpP/crotonase-like domain YPA_2076 IPR034733 YPA_2076 YPA_2077 IPR032816 YPA_2077 YPA_2078 IPR001406 Pseudouridine synthase I, TruA YPA_2078 IPR020095 Pseudouridine synthase I, TruA, C-terminal YPA_2078 IPR020097 Pseudouridine synthase I, TruA, alpha/beta domain YPA_2078 IPR020103 Pseudouridine synthase, catalytic domain YPA_2079 IPR000534 Semialdehyde dehydrogenase, NAD-binding YPA_2079 IPR012280 Semialdehyde dehydrogenase, dimerisation domain YPA_2079 IPR036291 YPA_2079 YPA_2080 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain YPA_2080 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain YPA_2080 IPR020921 Erythronate-4-phosphate dehydrogenase YPA_2080 IPR024531 Erythronate-4-phosphate dehydrogenase, dimerisation domain YPA_2080 IPR029752 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site 1 YPA_2080 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site YPA_2080 IPR036291 YPA_2080 YPA_2080 IPR038251 YPA_2080 YPA_2081 IPR003313 AraC-type arabinose-binding/dimerisation domain YPA_2081 IPR009057 Homeodomain-like YPA_2081 IPR011051 RmlC-like cupin domain YPA_2081 IPR014710 RmlC-like jelly roll fold YPA_2081 IPR018060 DNA binding HTH domain, AraC-type YPA_2081 IPR018062 HTH domain AraC-type, conserved site YPA_2081 IPR020449 Transcription regulator HTH, AraC- type YPA_2082 IPR000620 Drug/metabolite transporter YPA_2083 IPR023597 Flagellar regulator Flk YPA_2084 IPR000259 Fimbrial-type adhesion domain YPA_2084 IPR008966 Adhesion domain YPA_2084 IPR036937 YPA_2084 YPA_2085 IPR001920 Asp/Glu racemase YPA_2085 IPR004380 Aspartate racemase YPA_2085 IPR015942 Asp/Glu/hydantoin racemase YPA_2085 IPR018187 Asp/Glu racemase, active site YPA_2086 IPR014030 Beta-ketoacyl synthase, N-terminal YPA_2086 IPR014031 Beta-ketoacyl synthase, C-terminal YPA_2086 IPR016039 Thiolase-like YPA_2086 IPR018201 Beta-ketoacyl synthase, active site YPA_2086 IPR020841 Polyketide synthase, beta-ketoacyl synthase domain YPA_2087 IPR006076 FAD dependent oxidoreductase YPA_2087 IPR008471 MnmC-like methyltransferase YPA_2087 IPR017610 tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal YPA_2087 IPR023032 tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein MnmC YPA_2087 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase-like YPA_2087 IPR036188 YPA_2087 YPA_2088 IPR014987 Uncharacterised protein family YfcL YPA_2089 IPR007411 Protein of unknown function DUF462 YPA_2090 IPR002781 Transmembrane protein TauE like YPA_2091 IPR005073 Peptidase M74, penicillin-insensitive murein endopeptidase YPA_2091 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain YPA_2092 IPR000453 Chorismate synthase YPA_2092 IPR020541 Chorismate synthase, conserved site YPA_2092 IPR035904 YPA_2092 YPA_2093 IPR002052 DNA methylase, N-6 adenine-specific, conserved site YPA_2093 IPR004556 Modification methylase HemK YPA_2093 IPR007848 Methyltransferase small domain YPA_2093 IPR017127 Ribosomal protein L3-specific, glutamine-N5-methyltransferase YPA_2093 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase-like YPA_2094 IPR002625 Smr protein/MutS2 C-terminal YPA_2094 IPR022990 Uncharacterised protein family UPF0115 YPA_2094 IPR036063 YPA_2094 YPA_2096 IPR004449 Phosphohistidine phosphatase SixA, subgroup YPA_2096 IPR013078 Histidine phosphatase superfamily, clade-1 YPA_2096 IPR029033 Histidine phosphatase superfamily YPA_2097 IPR001753 Crotonase superfamily YPA_2097 IPR006108 3-hydroxyacyl-CoA dehydrogenase, C-terminal YPA_2097 IPR006176 3-hydroxyacyl-CoA dehydrogenase, NAD binding YPA_2097 IPR006180 3-hydroxyacyl-CoA dehydrogenase, conserved site YPA_2097 IPR008927 6-phosphogluconate dehydrogenase, C-terminal-like YPA_2097 IPR012802 Fatty oxidation complex, alpha subunit FadJ YPA_2097 IPR029045 ClpP/crotonase-like domain YPA_2097 IPR036291 YPA_2097 YPA_2098 IPR002155 Thiolase YPA_2098 IPR012806 Acetyl-CoA C-acyltransferase FadI YPA_2098 IPR016039 Thiolase-like YPA_2098 IPR020610 Thiolase, active site YPA_2098 IPR020613 Thiolase, conserved site YPA_2098 IPR020615 Thiolase, acyl-enzyme intermediate active site YPA_2098 IPR020616 Thiolase, N-terminal YPA_2098 IPR020617 Thiolase, C-terminal YPA_2099 IPR005272 Conserved hypothetical protein CHP00743 YPA_2099 IPR035571 YPA_2099 YPA_2100 IPR005017 Membrane protein, aromatic hydrocarbon degradation YPA_2101 IPR007428 VacJ-like lipoprotein YPA_2102 IPR011990 Tetratricopeptide-like helical domain YPA_2102 IPR017560 Cytochrome c-type biogenesis protein CcmI YPA_2103 IPR005616 Cytochrome C biogenesis protein CcmH YPA_2103 IPR038297 YPA_2103 YPA_2104 IPR004799 Periplasmic protein thiol:disulphide oxidoreductase DsbE YPA_2104 IPR013740 Redoxin YPA_2104 IPR017937 Thioredoxin, conserved site YPA_2104 IPR036249 YPA_2104 YPA_2105 IPR002541 Cytochrome c assembly protein YPA_2105 IPR003567 Cytochrome c-type biogenesis protein YPA_2105 IPR003568 Cytochrome c-type biogenesis protein CcmF YPA_2105 IPR032523 YPA_2105 YPA_2106 IPR004329 CcmE/CycJ protein YPA_2106 IPR036127 YPA_2106 YPA_2107 IPR007078 Haem exporter protein D (CcmD) YPA_2108 IPR002541 Cytochrome c assembly protein YPA_2108 IPR003557 Cytochrome c-type biogenesis protein CcmC YPA_2109 IPR003544 Cytochrome c-type biogenesis protein CcmB YPA_2109 IPR026031 Cytochrome c-type biogenesis protein CcmB, bacteria YPA_2110 IPR003439 ABC transporter-like YPA_2110 IPR003593 AAA+ ATPase domain YPA_2110 IPR005895 ABC transporter, haem export, CcmA YPA_2110 IPR017871 ABC transporter, conserved site YPA_2110 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPA_2112 IPR007156 LemA YPA_2112 IPR023353 LemA-like domain YPA_2113 IPR018702 Protein of unknown function DUF2207, membrane YPA_2114 IPR004624 PhnA protein YPA_2114 IPR013987 PhnA protein, N-terminal YPA_2114 IPR013988 PhnA protein, C-terminal YPA_2116 IPR007048 GpW/Gp25/anti-adapter protein IraD YPA_2117 IPR009211 Predicted virulence protein, SciE type YPA_2117 IPR011990 Tetratricopeptide-like helical domain YPA_2119 IPR008727 PAAR motif YPA_2120 IPR006533 Type VI secretion system, RhsGE-associated Vgr protein YPA_2120 IPR017847 Type VI secretion system, RhsGE-associated Vgr family subset YPA_2120 IPR037026 YPA_2120 YPA_2121 IPR009612 ImcF-related YPA_2121 IPR010623 Domain of unknown function DUF1215 YPA_2121 IPR017731 Type VI secretion system, IcmF YPA_2121 IPR025743 ImcF-related, N-terminal domain YPA_2121 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPA_2122 IPR006665 Outer membrane protein, OmpA/MotB, C-terminal YPA_2122 IPR017732 Type IV / VI secretion system, DotU YPA_2122 IPR017733 Type VI secretion system, OmpA/MotB domain YPA_2122 IPR036737 YPA_2122 YPA_2122 IPR038522 YPA_2122 YPA_2123 IPR001270 ClpA/B family YPA_2123 IPR002611 IstB-like ATP-binding protein YPA_2123 IPR003593 AAA+ ATPase domain YPA_2123 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPA_2123 IPR028350 DNA replication protein DnaC/insertion sequence putative ATP-binding protein YPA_2124 IPR001584 Integrase, catalytic core YPA_2124 IPR006120 Resolvase, HTH domain YPA_2124 IPR009057 Homeodomain-like YPA_2124 IPR012337 Ribonuclease H-like domain YPA_2125 IPR017732 Type IV / VI secretion system, DotU YPA_2125 IPR038522 YPA_2125 YPA_2126 IPR010263 Protein of unknown function DUF876 YPA_2127 IPR017734 Type VI secretion system, lipoprotein SciN YPA_2127 IPR038706 YPA_2127 YPA_2128 IPR008514 Type VI secretion system effector, Hcp YPA_2128 IPR036624 YPA_2128 YPA_2129 IPR010269 Protein of unknown function DUF877 YPA_2130 IPR008312 Uncharacterised conserved protein UCP028301 YPA_2131 IPR000259 Fimbrial-type adhesion domain YPA_2131 IPR008966 Adhesion domain YPA_2131 IPR036937 YPA_2131 YPA_2132 IPR000015 Outer membrane usher protein YPA_2132 IPR025949 PapC-like, C-terminal domain YPA_2133 IPR001207 Transposase, mutator type YPA_2134 IPR000015 Outer membrane usher protein YPA_2134 IPR025885 PapC, N-terminal domain YPA_2134 IPR037224 YPA_2134 YPA_2135 IPR001829 Pili assembly chaperone, bacterial YPA_2135 IPR008962 PapD-like YPA_2135 IPR013783 Immunoglobulin-like fold YPA_2135 IPR016147 PapD, N-terminal, bacterial YPA_2135 IPR016148 Pili assembly chaperone, C-terminal domain YPA_2135 IPR018046 Pili assembly chaperone, conserved site YPA_2135 IPR036316 YPA_2135 YPA_2136 IPR008966 Adhesion domain YPA_2136 IPR036937 YPA_2136 YPA_2136 IPR039458 YPA_2136 YPA_2137 IPR001270 ClpA/B family YPA_2137 IPR003593 AAA+ ATPase domain YPA_2137 IPR003959 ATPase, AAA-type, core YPA_2137 IPR004176 Clp, N-terminal YPA_2137 IPR017729 Type VI secretion system, ATPase ClpV1 YPA_2137 IPR018368 ClpA/B, conserved site 1 YPA_2137 IPR019489 Clp ATPase, C-terminal YPA_2137 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPA_2137 IPR028299 ClpA/B, conserved site 2 YPA_2137 IPR036628 YPA_2137 YPA_2138 IPR010272 Type VI secretion system, VCA0110 YPA_2139 IPR010732 Protein of unknown function DUF1305 YPA_2140 IPR010657 ImpA, N-terminal YPA_2141 IPR000259 Fimbrial-type adhesion domain YPA_2141 IPR008966 Adhesion domain YPA_2141 IPR036937 YPA_2141 YPA_2142 IPR021067 Glycosyltransferase, GlcNAc YPA_2142 IPR029044 Nucleotide-diphospho-sugar transferases YPA_2144 IPR006664 Outer membrane protein, bacterial YPA_2144 IPR006665 Outer membrane protein, OmpA/MotB, C-terminal YPA_2144 IPR036737 YPA_2144 YPA_2145 IPR014894 Protein DcrB YPA_2145 IPR016123 Mog1/PsbP, alpha/beta/alpha sandwich YPA_2146 IPR000792 Transcription regulator LuxR, C-terminal YPA_2146 IPR016032 Signal transduction response regulator, C-terminal effector YPA_2146 IPR036388 YPA_2146 YPA_2147 IPR011757 Lytic transglycosylase MltB YPA_2147 IPR023346 Lysozyme-like domain YPA_2147 IPR031304 YPA_2147 YPA_2148 IPR006061 Bacterial extracellular solute-binding family 1, conserved site YPA_2148 IPR026045 Ferric binding protein YPA_2149 IPR000515 MetI-like domain YPA_2149 IPR035906 YPA_2149 YPA_2150 IPR003439 ABC transporter-like YPA_2150 IPR003593 AAA+ ATPase domain YPA_2150 IPR008995 Molybdate/tungstate binding, C-terminal YPA_2150 IPR017871 ABC transporter, conserved site YPA_2150 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPA_2151 IPR014591 Uncharacterised conserved protein UCP034455 YPA_2151 IPR021125 Protein of unknown function DUF2127 YPA_2152 IPR008514 Type VI secretion system effector, Hcp YPA_2152 IPR036624 YPA_2152 YPA_2153 IPR025320 Protein of unknown function DUF4225 YPA_2154 IPR006655 Molybdopterin oxidoreductase, prokaryotic, conserved site YPA_2154 IPR006656 Molybdopterin oxidoreductase YPA_2154 IPR006657 Molydopterin dinucleotide-binding domain YPA_2154 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain YPA_2154 IPR009010 Aspartate decarboxylase-like domain YPA_2154 IPR011888 Anaerobic dimethyl sulphoxide reductase, subunit A, DmsA/YnfE YPA_2154 IPR019546 Twin-arginine translocation pathway, signal sequence, bacterial/archaeal YPA_2154 IPR027467 Molybdopterin oxidoreductase, molybdopterin cofactor binding site YPA_2155 IPR014297 Dimethylsulphoxide reductase, chain B YPA_2155 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain YPA_2155 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site YPA_2156 IPR007059 DMSO reductase anchor subunit (DmsC) YPA_2157 IPR020945 DMSO/Nitrate reductase chaperone YPA_2157 IPR026269 Tat proofreading chaperone DmsD-type YPA_2157 IPR036411 YPA_2157 YPA_2158 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain YPA_2158 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site YPA_2159 IPR008517 Protein of unknown function DUF799 YPA_2160 IPR014508 Uncharacterised conserved protein, TPR-like repeat YPA_2161 IPR005534 Curli production assembly/transport component CsgG YPA_2162 IPR031807 YPA_2162 YPA_2163 IPR011577 Cytochrome b561, bacterial/Ni-hydrogenase YPA_2163 IPR016174 Di-haem cytochrome, transmembrane YPA_2164 IPR004839 Aminotransferase, class I/classII YPA_2164 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 YPA_2164 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 YPA_2164 IPR015424 Pyridoxal phosphate-dependent transferase YPA_2165 IPR010856 Protein of unknown function DUF1479 YPA_2165 IPR027443 Isopenicillin N synthase-like YPA_2166 IPR003836 Glucokinase YPA_2167 IPR007896 Transmembrane pair, bacterial YPA_2168 IPR000847 Transcription regulator HTH, LysR YPA_2168 IPR005119 LysR, substrate-binding YPA_2168 IPR036388 YPA_2168 YPA_2168 IPR036390 YPA_2168 YPA_2169 IPR023210 NADP-dependent oxidoreductase domain YPA_2169 IPR036812 YPA_2169 YPA_2170 IPR019638 Protein of unknown function DUF2502 YPA_2171 IPR001046 NRAMP family YPA_2172 IPR002668 Concentrative nucleoside transporter N-terminal domain YPA_2172 IPR011642 Nucleoside recognition Gate YPA_2172 IPR011657 Concentrative nucleoside transporter C-terminal domain YPA_2173 IPR000924 Glutamyl/glutaminyl-tRNA synthetase YPA_2173 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site YPA_2173 IPR004527 Glutamate-tRNA ligase, bacterial/mitochondrial YPA_2173 IPR008925 Aminoacyl-tRNA synthetase, class I, anticodon-binding YPA_2173 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold YPA_2173 IPR020058 Glutamyl/glutaminyl-tRNA synthetase, class Ib, catalytic domain YPA_2173 IPR020751 Aminoacyl-tRNA synthetase, class I, anticodon-binding domain, subdomain 2 YPA_2174 IPR002686 Transposase IS200-like YPA_2174 IPR036515 YPA_2174 YPA_2175 IPR009267 Protein of unknown function DUF925 YPA_2176 IPR025577 FlxA-like protein YPA_2177 IPR024530 Protein of unknown function DUF3820 YPA_2178 IPR001357 BRCT domain YPA_2178 IPR001679 NAD-dependent DNA ligase YPA_2178 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 YPA_2178 IPR004149 Zinc-finger, NAD-dependent DNA ligase C4-type YPA_2178 IPR004150 NAD-dependent DNA ligase, OB-fold YPA_2178 IPR010994 RuvA domain 2-like YPA_2178 IPR012340 Nucleic acid-binding, OB-fold YPA_2178 IPR013839 NAD-dependent DNA ligase, adenylation YPA_2178 IPR013840 NAD-dependent DNA ligase, N-terminal YPA_2178 IPR018239 NAD-dependent DNA ligase, active site YPA_2178 IPR033136 YPA_2178 YPA_2178 IPR036420 YPA_2178 YPA_2179 IPR007449 ZipA, C-terminal FtsZ-binding domain YPA_2179 IPR011919 Cell division protein ZipA YPA_2179 IPR036765 YPA_2179 YPA_2182 IPR001216 Cysteine synthase/cystathionine beta-synthase, pyridoxal-phosphate attachment site YPA_2182 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme YPA_2182 IPR005856 Cysteine synthase K/M YPA_2182 IPR005859 Cysteine synthase A YPA_2182 IPR036052 YPA_2182 YPA_2183 IPR000032 Phosphocarrier HPr protein-like YPA_2183 IPR001020 Phosphotransferase system, HPr histidine phosphorylation site YPA_2183 IPR002114 Phosphotransferase system, HPr serine phosphorylation site YPA_2183 IPR035895 YPA_2183 YPA_2184 IPR000121 PEP-utilising enzyme, C-terminal YPA_2184 IPR006318 Phosphoenolpyruvate-utilising enzyme YPA_2184 IPR008279 PEP-utilising enzyme, mobile domain YPA_2184 IPR008731 Phosphotransferase system, enzyme I N-terminal YPA_2184 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain YPA_2184 IPR018274 PEP-utilising enzyme, active site YPA_2184 IPR023151 PEP-utilising enzyme, conserved site YPA_2184 IPR024692 Phosphotransferase system, enzyme I YPA_2184 IPR036618 YPA_2184 YPA_2184 IPR036637 YPA_2184 YPA_2185 IPR001127 Phosphotransferase system, sugar-specific permease EIIA type 1 YPA_2185 IPR011055 Duplicated hybrid motif YPA_2186 IPR002686 Transposase IS200-like YPA_2186 IPR036515 YPA_2186 YPA_2187 IPR003594 Histidine kinase-like ATPase, C-terminal domain YPA_2187 IPR003660 HAMP linker domain YPA_2187 IPR003661 Signal transduction histidine kinase EnvZ-like, dimerisation/phosphoacceptor domain YPA_2187 IPR004358 Signal transduction histidine kinase-related protein, C-terminal YPA_2187 IPR036097 YPA_2187 YPA_2187 IPR036890 YPA_2187 YPA_2188 IPR001789 Signal transduction response regulator, receiver domain YPA_2188 IPR001867 Signal transduction response regulator, C-terminal YPA_2188 IPR011006 CheY-like superfamily YPA_2188 IPR016032 Signal transduction response regulator, C-terminal effector YPA_2188 IPR036388 YPA_2188 YPA_2189 IPR006143 RND efflux pump, membrane fusion protein YPA_2189 IPR032317 YPA_2189 YPA_2190 IPR003439 ABC transporter-like YPA_2190 IPR003593 AAA+ ATPase domain YPA_2190 IPR003838 Permease FtsX-like YPA_2190 IPR017871 ABC transporter, conserved site YPA_2190 IPR025857 MacB-like periplasmic core domain YPA_2190 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPA_2191 IPR001763 Rhodanese-like domain YPA_2191 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain YPA_2191 IPR016156 FAD/NAD-linked reductase, dimerisation domain YPA_2191 IPR023753 Pyridine nucleotide-disulphide oxidoreductase, FAD/NAD(P)-binding domain YPA_2191 IPR036188 YPA_2191 YPA_2191 IPR036873 YPA_2191 YPA_2192 IPR038377 YPA_2192 YPA_2193 IPR000587 Creatinase, N-terminal YPA_2193 IPR000994 Peptidase M24, structural domain YPA_2193 IPR029149 Creatinase/Aminopeptidase P/Spt16, N-terminal YPA_2193 IPR036005 YPA_2193 YPA_2194 IPR000587 Creatinase, N-terminal YPA_2194 IPR029149 Creatinase/Aminopeptidase P/Spt16, N-terminal YPA_2195 IPR004839 Aminotransferase, class I/classII YPA_2195 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 YPA_2195 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 YPA_2195 IPR015424 Pyridoxal phosphate-dependent transferase YPA_2195 IPR027619 Putative C-S lyase YPA_2196 IPR002035 von Willebrand factor, type A YPA_2196 IPR036465 YPA_2196 YPA_2197 IPR003594 Histidine kinase-like ATPase, C-terminal domain YPA_2197 IPR003661 Signal transduction histidine kinase EnvZ-like, dimerisation/phosphoacceptor domain YPA_2197 IPR004358 Signal transduction histidine kinase-related protein, C-terminal YPA_2197 IPR036097 YPA_2197 YPA_2197 IPR036890 YPA_2197 YPA_2198 IPR001789 Signal transduction response regulator, receiver domain YPA_2198 IPR001867 Signal transduction response regulator, C-terminal YPA_2198 IPR011006 CheY-like superfamily YPA_2198 IPR016032 Signal transduction response regulator, C-terminal effector YPA_2198 IPR036388 YPA_2198 YPA_2199 IPR032675 YPA_2199 YPA_2200 IPR001216 Cysteine synthase/cystathionine beta-synthase, pyridoxal-phosphate attachment site YPA_2200 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme YPA_2200 IPR005856 Cysteine synthase K/M YPA_2200 IPR005858 Cysteine synthase B YPA_2200 IPR036052 YPA_2200 YPA_2201 IPR003439 ABC transporter-like YPA_2201 IPR003593 AAA+ ATPase domain YPA_2201 IPR005666 Sulphate transport system permease protein 1 YPA_2201 IPR008995 Molybdate/tungstate binding, C-terminal YPA_2201 IPR017871 ABC transporter, conserved site YPA_2201 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPA_2202 IPR000515 MetI-like domain YPA_2202 IPR005667 Sulphate ABC transporter permease protein 2 YPA_2202 IPR011866 Sulphate ABC transporter, permease protein CysW YPA_2202 IPR035906 YPA_2202 YPA_2203 IPR000515 MetI-like domain YPA_2203 IPR005667 Sulphate ABC transporter permease protein 2 YPA_2203 IPR011865 Sulphate ABC transporter, permease protein CysT YPA_2203 IPR035906 YPA_2203 YPA_2204 IPR005669 Thiosulphate/Sulfate-binding protein YPA_2205 IPR004742 Sialic acid transporter YPA_2205 IPR011701 Major facilitator superfamily YPA_2205 IPR036259 YPA_2205 YPA_2206 IPR000281 Helix-turn-helix protein RpiR YPA_2206 IPR001347 Sugar isomerase (SIS) YPA_2206 IPR009057 Homeodomain-like YPA_2206 IPR036388 YPA_2206 YPA_2207 IPR004375 Conserved hypothetical protein CHP00022 YPA_2207 IPR037012 YPA_2207 YPA_2208 IPR000600 ROK YPA_2208 IPR023945 N-acetylmannosamine kinase, bacterial YPA_2209 IPR001611 Leucine-rich repeat YPA_2209 IPR032674 YPA_2209 YPA_2209 IPR032675 YPA_2209 YPA_2210 IPR032675 YPA_2210 YPA_2211 IPR007260 Putative N-acetylmannosamine-6-phosphate epimerase YPA_2211 IPR011060 Ribulose-phosphate binding barrel YPA_2211 IPR013785 Aldolase-type TIM barrel YPA_2212 IPR002220 DapA-like YPA_2212 IPR013785 Aldolase-type TIM barrel YPA_2212 IPR020624 Dihydrodipicolinate synthetase, conserved site YPA_2213 IPR006314 Dyp-type peroxidase YPA_2213 IPR011008 Dimeric alpha-beta barrel YPA_2214 IPR010938 Protein of unknown function DUF1131 YPA_2214 IPR038714 YPA_2214 YPA_2215 IPR005220 Viral OB-fold, YgiW YPA_2215 IPR016052 Bacteriophage 933W, L0136 YPA_2215 IPR036700 YPA_2215 YPA_2216 IPR003991 Pertactin virulence factor family YPA_2216 IPR004899 Pertactin, central region YPA_2216 IPR005546 Autotransporter beta-domain YPA_2216 IPR006315 Outer membrane autotransporter barrel YPA_2216 IPR011050 Pectin lyase fold/virulence factor YPA_2216 IPR012332 P22 tailspike C-terminal domain-like YPA_2216 IPR036709 YPA_2216 YPA_2219 IPR000182 GNAT domain YPA_2219 IPR016181 Acyl-CoA N-acyltransferase YPA_2219 IPR023072 Acetyltransferase, YpeA YPA_2220 IPR001260 Coproporphyrinogen III oxidase, aerobic YPA_2220 IPR018375 Coproporphyrinogen III oxidase, conserved site YPA_2220 IPR036406 YPA_2220 YPA_2221 IPR003791 Protein of unknown function UPF0178 YPA_2222 IPR002505 Phosphate acetyl/butaryl transferase YPA_2222 IPR012188 Malic enzyme, phosphate acetyl/butaryl transferase YPA_2222 IPR012301 Malic enzyme, N-terminal domain YPA_2222 IPR012302 Malic enzyme, NAD-binding YPA_2222 IPR015884 Malic enzyme, conserved site YPA_2222 IPR036291 YPA_2222 YPA_2222 IPR037062 YPA_2222 YPA_2223 IPR000086 NUDIX hydrolase domain YPA_2223 IPR004385 Nucleoside diphosphate pyrophosphatase YPA_2223 IPR015797 NUDIX hydrolase domain-like YPA_2224 IPR001270 ClpA/B family YPA_2224 IPR002611 IstB-like ATP-binding protein YPA_2224 IPR003593 AAA+ ATPase domain YPA_2224 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPA_2224 IPR028350 DNA replication protein DnaC/insertion sequence putative ATP-binding protein YPA_2225 IPR001584 Integrase, catalytic core YPA_2225 IPR006120 Resolvase, HTH domain YPA_2225 IPR009057 Homeodomain-like YPA_2225 IPR012337 Ribonuclease H-like domain YPA_2226 IPR015797 NUDIX hydrolase domain-like YPA_2227 IPR005126 NapC/NirT cytochrome c, N-terminal YPA_2227 IPR011885 Periplasmic nitrate reductase c-type cytochrome, NapC/NirT YPA_2227 IPR024717 Denitrification system component NapC/NirT/NrfH YPA_2227 IPR036280 YPA_2227 YPA_2227 IPR038266 YPA_2227 YPA_2228 IPR005591 Nitrate reductase cytochrome c-type subunit NapB YPA_2228 IPR036280 YPA_2228 YPA_2229 IPR006656 Molybdopterin oxidoreductase YPA_2229 IPR006657 Molydopterin dinucleotide-binding domain YPA_2229 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain YPA_2229 IPR009010 Aspartate decarboxylase-like domain YPA_2229 IPR010051 Periplasmic nitrate reductase, large subunit YPA_2229 IPR019546 Twin-arginine translocation pathway, signal sequence, bacterial/archaeal YPA_2229 IPR027467 Molybdopterin oxidoreductase, molybdopterin cofactor binding site YPA_2230 IPR005623 Chaperone NapD, nitrate reductase assembly YPA_2231 IPR004496 Ferredoxin-type protein NapF YPA_2231 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain YPA_2231 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site YPA_2232 IPR000792 Transcription regulator LuxR, C-terminal YPA_2232 IPR001789 Signal transduction response regulator, receiver domain YPA_2232 IPR011006 CheY-like superfamily YPA_2232 IPR016032 Signal transduction response regulator, C-terminal effector YPA_2233 IPR017162 Uncharacterised conserved protein UCP037266 YPA_2233 IPR036388 YPA_2233 YPA_2234 IPR001036 Acriflavin resistance protein YPA_2234 IPR004764 Hydrophobe/amphiphile efflux-1 HAE1 YPA_2234 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains YPA_2236 IPR007404 Protein of unknown function DUF457 YPA_2237 IPR007197 Radical SAM YPA_2237 IPR013785 Aldolase-type TIM barrel YPA_2237 IPR023885 4Fe4S-binding SPASM domain YPA_2238 IPR000917 Sulfatase YPA_2238 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha YPA_2238 IPR017850 Alkaline-phosphatase-like, core domain YPA_2238 IPR024607 Sulfatase, conserved site YPA_2239 IPR003439 ABC transporter-like YPA_2239 IPR003593 AAA+ ATPase domain YPA_2239 IPR008995 Molybdate/tungstate binding, C-terminal YPA_2239 IPR017871 ABC transporter, conserved site YPA_2239 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPA_2240 IPR000515 MetI-like domain YPA_2240 IPR035906 YPA_2240 YPA_2241 IPR006059 Bacterial extracellular solute-binding, family 1 YPA_2242 IPR011990 Tetratricopeptide-like helical domain YPA_2243 IPR006504 Transcriptional regulator Spx/MgsR YPA_2243 IPR006660 Arsenate reductase-like YPA_2243 IPR036249 YPA_2243 YPA_2244 IPR001261 ArgE/DapE/ACY1/CPG2/YscS, conserved site YPA_2244 IPR002933 Peptidase M20 YPA_2244 IPR005941 Succinyl-diaminopimelate desuccinylase, proteobacteria YPA_2244 IPR011650 Peptidase M20, dimerisation domain YPA_2244 IPR036264 YPA_2244 YPA_2245 IPR003709 Peptidase M15B/M15C YPA_2245 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain YPA_2246 IPR020910 Uncharacterised protein family UPF0370 YPA_2247 IPR000182 GNAT domain YPA_2247 IPR007807 Helicase domain YPA_2247 IPR013562 Domain of unknown function DUF1726 YPA_2247 IPR016181 Acyl-CoA N-acyltransferase YPA_2247 IPR024914 tRNA(Met) cytidine acetyltransferase TmcA YPA_2247 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPA_2247 IPR033442 YPA_2247 YPA_2247 IPR038321 YPA_2247 YPA_2248 IPR007382 Uncharacterised protein family UPF0756, transmembrame YPA_2249 IPR007343 Uncharacterised protein family, zinc metallopeptidase putative YPA_2250 IPR001636 Phosphoribosylaminoimidazole-succinocarboxamide synthase YPA_2250 IPR018236 SAICAR synthetase, conserved site YPA_2250 IPR028923 SAICAR synthetase/ADE2, N-terminal YPA_2251 IPR002686 Transposase IS200-like YPA_2251 IPR036515 YPA_2251 YPA_2252 IPR010653 Lipoprotein, NlpB YPA_2252 IPR014524 Outer membrane protein assembly factor BamC YPA_2253 IPR002220 DapA-like YPA_2253 IPR005263 4-hydroxy-tetrahydrodipicolinate synthase, DapA YPA_2253 IPR013785 Aldolase-type TIM barrel YPA_2253 IPR020624 Dihydrodipicolinate synthetase, conserved site YPA_2253 IPR020625 Dihydrodipicolinate synthetase, active site YPA_2254 IPR016867 Glycine cleavage repressor GcvR YPA_2255 IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant YPA_2255 IPR024706 Peroxiredoxin, AhpC-type YPA_2255 IPR036249 YPA_2255 YPA_2259 IPR002549 Uncharacterised protein family UPF0118 YPA_2260 IPR001915 Peptidase M48 YPA_2260 IPR011716 Tetratricopeptide TPR-3 YPA_2260 IPR011990 Tetratricopeptide-like helical domain YPA_2260 IPR030873 YPA_2260 YPA_2261 IPR006659 Arsenate reductase YPA_2261 IPR006660 Arsenate reductase-like YPA_2261 IPR036249 YPA_2261 YPA_2262 IPR013317 Chromosomal replication control, initiator (DnaA)/regulator (Hda) YPA_2262 IPR017788 DnaA regulatory inactivator Hda YPA_2262 IPR020591 Chromosomal replication control, initiator DnaA-like YPA_2262 IPR022864 DnaA regulatory inactivator Hda, Enterobacteriaceae YPA_2262 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPA_2263 IPR002686 Transposase IS200-like YPA_2263 IPR036515 YPA_2263 YPA_2264 IPR005765 Uracil phosphoribosyl transferase YPA_2264 IPR029057 Phosphoribosyltransferase-like YPA_2264 IPR034332 YPA_2264 YPA_2265 IPR004733 Phosphoribosylformylglycinamidine cyclo-ligase YPA_2265 IPR010918 AIR synthase-related protein, C-terminal domain YPA_2265 IPR016188 PurM, N-terminal-like YPA_2265 IPR036676 YPA_2265 YPA_2265 IPR036921 YPA_2265 YPA_2266 IPR001555 Phosphoribosylglycinamide formyltransferase, active site YPA_2266 IPR002376 Formyl transferase, N-terminal YPA_2266 IPR004607 Phosphoribosylglycinamide formyltransferase YPA_2266 IPR036477 YPA_2266 YPA_2267 IPR000182 GNAT domain YPA_2267 IPR016181 Acyl-CoA N-acyltransferase YPA_2268 IPR020193 Flagellin lysine-N-methylase, C-terminal YPA_2269 IPR005358 Putative zinc- or iron-chelating domain containing protein YPA_2270 IPR003439 ABC transporter-like YPA_2270 IPR003593 AAA+ ATPase domain YPA_2270 IPR005670 Phosphate transport system permease protein 1 YPA_2270 IPR017871 ABC transporter, conserved site YPA_2270 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPA_2271 IPR000515 MetI-like domain YPA_2271 IPR005672 Phosphate transport system permease protein PstA YPA_2271 IPR035906 YPA_2271 YPA_2272 IPR000515 MetI-like domain YPA_2272 IPR035906 YPA_2272 YPA_2273 IPR003414 Polyphosphate kinase YPA_2273 IPR024953 Polyphosphate kinase middle domain YPA_2273 IPR025198 Polyphosphate kinase N-terminal domain YPA_2273 IPR025200 Polyphosphate kinase C-terminal domain YPA_2273 IPR036830 YPA_2273 YPA_2273 IPR036832 YPA_2273 YPA_2274 IPR003695 Ppx/GppA phosphatase YPA_2274 IPR022371 Exopolyphosphatase YPA_2274 IPR030673 YPA_2274 YPA_2275 IPR000644 CBS domain YPA_2275 IPR006667 SLC41 divalent cation transporters, integral membrane domain YPA_2275 IPR006668 Magnesium transporter, MgtE intracellular domain YPA_2275 IPR006669 Magnesium transporter MgtE YPA_2275 IPR036739 YPA_2275 YPA_2275 IPR038048 YPA_2275 YPA_2275 IPR038076 YPA_2275 YPA_2276 IPR013126 Heat shock protein 70 family YPA_2276 IPR018181 Heat shock protein 70, conserved site YPA_2278 IPR001584 Integrase, catalytic core YPA_2278 IPR006120 Resolvase, HTH domain YPA_2278 IPR009057 Homeodomain-like YPA_2278 IPR012337 Ribonuclease H-like domain YPA_2279 IPR001270 ClpA/B family YPA_2279 IPR002611 IstB-like ATP-binding protein YPA_2279 IPR003593 AAA+ ATPase domain YPA_2279 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPA_2279 IPR028350 DNA replication protein DnaC/insertion sequence putative ATP-binding protein YPA_2280 IPR000515 MetI-like domain YPA_2280 IPR035906 YPA_2280 YPA_2281 IPR000515 MetI-like domain YPA_2281 IPR035906 YPA_2281 YPA_2282 IPR006059 Bacterial extracellular solute-binding, family 1 YPA_2283 IPR004632 4-aminobutyrate aminotransferase, bacterial YPA_2283 IPR005814 Aminotransferase class-III YPA_2283 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 YPA_2283 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 YPA_2283 IPR015424 Pyridoxal phosphate-dependent transferase YPA_2284 IPR000524 Transcription regulator HTH, GntR YPA_2284 IPR004839 Aminotransferase, class I/classII YPA_2284 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 YPA_2284 IPR015424 Pyridoxal phosphate-dependent transferase YPA_2284 IPR036388 YPA_2284 YPA_2284 IPR036390 YPA_2284 YPA_2285 IPR003439 ABC transporter-like YPA_2285 IPR003593 AAA+ ATPase domain YPA_2285 IPR005893 Spermidine/putrescine ABC transporter, ATP-binding subunit YPA_2285 IPR008995 Molybdate/tungstate binding, C-terminal YPA_2285 IPR013611 Transport-associated OB, type 2 YPA_2285 IPR017871 ABC transporter, conserved site YPA_2285 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPA_2286 IPR006143 RND efflux pump, membrane fusion protein YPA_2286 IPR022824 Multidrug resistance protein MdtA YPA_2286 IPR039562 YPA_2286 YPA_2287 IPR001036 Acriflavin resistance protein YPA_2287 IPR022831 Multidrug resistance protein MdtB YPA_2287 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains YPA_2288 IPR001036 Acriflavin resistance protein YPA_2288 IPR023931 Multidrug resistance protein MdtC YPA_2288 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains YPA_2289 IPR004638 Drug resistance transporter EmrB/QacA subfamily YPA_2289 IPR011701 Major facilitator superfamily YPA_2289 IPR023721 Multidrug resistance protein MdtD, putative YPA_2289 IPR036259 YPA_2289 YPA_2290 IPR003660 HAMP linker domain YPA_2290 IPR003661 Signal transduction histidine kinase EnvZ-like, dimerisation/phosphoacceptor domain YPA_2290 IPR036097 YPA_2290 YPA_2290 IPR036890 YPA_2290 YPA_2291 IPR003594 Histidine kinase-like ATPase, C-terminal domain YPA_2291 IPR004358 Signal transduction histidine kinase-related protein, C-terminal YPA_2291 IPR036890 YPA_2291 YPA_2292 IPR001789 Signal transduction response regulator, receiver domain YPA_2292 IPR001867 Signal transduction response regulator, C-terminal YPA_2292 IPR011006 CheY-like superfamily YPA_2292 IPR036388 YPA_2292 YPA_2293 IPR010879 Domain of unknown function DUF1508 YPA_2293 IPR036913 YPA_2293 YPA_2294 IPR001539 Peptidase U32 YPA_2294 IPR032525 YPA_2294 YPA_2295 IPR001206 Diacylglycerol kinase, catalytic domain YPA_2295 IPR005218 Diacylglycerol/lipid kinase YPA_2295 IPR016064 ATP-NAD kinase-like domain YPA_2295 IPR017438 Inorganic polyphosphate/ATP-NAD kinase, domain 1 YPA_2295 IPR022433 Lipid kinase YegS YPA_2296 IPR014453 Inhibitor of vertebrate lysozyme YPA_2296 IPR036501 YPA_2296 YPA_2299 IPR004399 Hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase YPA_2299 IPR013749 Pyridoxamine kinase/Phosphomethylpyrimidine kinase YPA_2299 IPR029056 Ribokinase-like YPA_2300 IPR010351 Protein of unknown function DUF943 YPA_2302 IPR001207 Transposase, mutator type YPA_2304 IPR010665 Protein of unknown function DUF1240 YPA_2305 IPR010665 Protein of unknown function DUF1240 YPA_2306 IPR010665 Protein of unknown function DUF1240 YPA_2307 IPR010665 Protein of unknown function DUF1240 YPA_2308 IPR008514 Type VI secretion system effector, Hcp YPA_2308 IPR036624 YPA_2308 YPA_2309 IPR002686 Transposase IS200-like YPA_2309 IPR036515 YPA_2309 YPA_2310 IPR002686 Transposase IS200-like YPA_2310 IPR036515 YPA_2310 YPA_2311 IPR001674 GMP synthase, C-terminal YPA_2311 IPR004739 GMP synthase, N-terminal YPA_2311 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold YPA_2311 IPR017926 Glutamine amidotransferase YPA_2311 IPR022310 NAD/GMP synthase YPA_2311 IPR022955 GMP synthase YPA_2311 IPR029062 Class I glutamine amidotransferase-like YPA_2312 IPR000644 CBS domain YPA_2312 IPR001093 IMP dehydrogenase/GMP reductase YPA_2312 IPR005990 Inosine-5'-monophosphate dehydrogenase YPA_2312 IPR013785 Aldolase-type TIM barrel YPA_2312 IPR015875 IMP dehydrogenase / GMP reductase, conserved site YPA_2313 IPR003753 Exonuclease VII, large subunit YPA_2313 IPR020579 Exonuclease VII, large subunit, C-terminal YPA_2313 IPR025824 OB-fold nucleic acid binding domain YPA_2314 IPR004776 Auxin efflux carrier YPA_2314 IPR038770 YPA_2314 YPA_2315 IPR005225 Small GTP-binding protein domain YPA_2315 IPR006073 GTP binding domain YPA_2315 IPR015946 K homology domain-like, alpha/beta YPA_2315 IPR016484 GTP-binding protein EngA YPA_2315 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPA_2315 IPR032859 YPA_2315 YPA_2316 IPR002372 Pyrrolo-quinoline quinone repeat YPA_2316 IPR011047 Quinonprotein alcohol dehydrogenase-like superfamily YPA_2316 IPR015943 WD40/YVTN repeat-like-containing domain YPA_2316 IPR017687 Outer membrane protein assembly factor BamB YPA_2316 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat YPA_2317 IPR011990 Tetratricopeptide-like helical domain YPA_2317 IPR018704 Domain of unknown function DUF09976 YPA_2317 IPR026039 Uncharacterised protein family UPF0070 YPA_2318 IPR004154 Anticodon-binding YPA_2318 IPR004516 Histidine-tRNA ligase/ATP phosphoribosyltransferase regulatory subunit YPA_2318 IPR015807 Histidine-tRNA ligase YPA_2318 IPR036621 YPA_2318 YPA_2319 IPR004588 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type YPA_2319 IPR011005 Dihydropteroate synthase-like YPA_2319 IPR016425 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial YPA_2319 IPR036849 YPA_2319 YPA_2320 IPR001387 Cro/C1-type helix-turn-helix domain YPA_2320 IPR010982 Lambda repressor-like, DNA-binding domain YPA_2320 IPR023690 Cytoskeleton protein RodZ YPA_2320 IPR025194 Domain of unknown function DUF4115 YPA_2321 IPR011990 Tetratricopeptide-like helical domain YPA_2321 IPR013360 Pilus biogenesis/stability type IV, PilW YPA_2321 IPR019734 Tetratricopeptide repeat YPA_2322 IPR004383 Ribosomal RNA large subunit methyltransferase RlmN/Cfr YPA_2322 IPR007197 Radical SAM YPA_2322 IPR013785 Aldolase-type TIM barrel YPA_2322 IPR027492 Dual-specificity RNA methyltransferase RlmN YPA_2323 IPR001564 Nucleoside diphosphate kinase YPA_2323 IPR023005 Nucleoside diphosphate kinase, active site YPA_2323 IPR034907 YPA_2323 YPA_2323 IPR036850 YPA_2323 YPA_2324 IPR001064 Beta/gamma crystallin YPA_2324 IPR011024 Gamma-crystallin-related YPA_2324 IPR015059 Calcium-dependent cell adhesion molecule, N-terminal YPA_2324 IPR015185 Exotoxin A, binding YPA_2326 IPR004899 Pertactin, central region YPA_2326 IPR005546 Autotransporter beta-domain YPA_2326 IPR006315 Outer membrane autotransporter barrel YPA_2326 IPR011050 Pectin lyase fold/virulence factor YPA_2326 IPR012332 P22 tailspike C-terminal domain-like YPA_2326 IPR030930 YPA_2326 YPA_2326 IPR036709 YPA_2326 YPA_2327 IPR004899 Pertactin, central region YPA_2327 IPR005546 Autotransporter beta-domain YPA_2327 IPR006315 Outer membrane autotransporter barrel YPA_2327 IPR011050 Pectin lyase fold/virulence factor YPA_2327 IPR012332 P22 tailspike C-terminal domain-like YPA_2327 IPR036709 YPA_2327 YPA_2328 IPR003991 Pertactin virulence factor family YPA_2328 IPR005546 Autotransporter beta-domain YPA_2328 IPR006315 Outer membrane autotransporter barrel YPA_2328 IPR036709 YPA_2328 YPA_2329 IPR009839 SseB protein N-terminal domain YPA_2329 IPR027945 SseB protein, C-terminal YPA_2330 IPR000819 Peptidase M17, leucyl aminopeptidase, C-terminal YPA_2330 IPR008330 Peptidase M17, peptidase B YPA_2330 IPR011356 Leucine aminopeptidase/peptidase B YPA_2331 IPR007479 ISC system FeS cluster assembly, IscX YPA_2331 IPR036762 YPA_2331 YPA_2332 IPR001041 2Fe-2S ferredoxin-type domain YPA_2332 IPR001055 Adrenodoxin YPA_2332 IPR011536 Ferredoxin, 2Fe-2S type YPA_2332 IPR012675 Beta-grasp domain YPA_2332 IPR018298 Adrenodoxin, iron-sulphur binding site YPA_2332 IPR036010 YPA_2332 YPA_2333 IPR010236 ISC system FeS cluster assembly, HscA chaperone YPA_2333 IPR013126 Heat shock protein 70 family YPA_2333 IPR018181 Heat shock protein 70, conserved site YPA_2333 IPR029047 Heat shock protein 70kD, peptide-binding domain YPA_2333 IPR029048 Heat shock protein 70kD, C-terminal domain YPA_2334 IPR001623 DnaJ domain YPA_2334 IPR004640 Co-chaperone Hsc20 YPA_2334 IPR009073 Co-chaperone HscB, C-terminal oligomerisation domain YPA_2334 IPR036386 YPA_2334 YPA_2334 IPR036869 YPA_2334 YPA_2335 IPR000361 FeS cluster biogenesis YPA_2335 IPR011302 ISC system FeS cluster assembly, IscA scaffold YPA_2335 IPR016092 FeS cluster insertion protein YPA_2335 IPR017870 FeS cluster insertion, C-terminal, conserved site YPA_2335 IPR035903 YPA_2335 YPA_2336 IPR002871 NIF system FeS cluster assembly, NifU, N-terminal YPA_2336 IPR011339 ISC system FeS cluster assembly, IscU scaffold YPA_2337 IPR000192 Aminotransferase class V domain YPA_2337 IPR010240 Cysteine desulfurase YPA_2337 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 YPA_2337 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 YPA_2337 IPR015424 Pyridoxal phosphate-dependent transferase YPA_2337 IPR016454 Cysteine desulfurase, NifS YPA_2337 IPR020578 Aminotransferase class-V pyridoxal-phosphate binding site YPA_2338 IPR000944 Transcription regulator Rrf2-like YPA_2338 IPR010242 Transcription factor HTH, IscR YPA_2338 IPR030489 YPA_2338 YPA_2338 IPR036388 YPA_2338 YPA_2338 IPR036390 YPA_2338 YPA_2339 IPR001537 tRNA/rRNA methyltransferase, SpoU type YPA_2339 IPR004384 RNA methyltransferase TrmH, group 1 YPA_2339 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal YPA_2339 IPR029028 Alpha/beta knot methyltransferases YPA_2340 IPR000760 Inositol monophosphatase YPA_2340 IPR020550 Inositol monophosphatase, conserved site YPA_2340 IPR020583 Inositol monophosphatase, metal-binding site YPA_2340 IPR022337 Inositol monophosphatase, SuhB YPA_2341 IPR011541 Nickel/cobalt transporter, high-affinity YPA_2342 IPR010412 Protein of unknown function DUF1007 YPA_2342 IPR016537 Uncharacterised conserved protein UCP008159, YPA_2343 IPR011608 PRD domain YPA_2343 IPR036634 YPA_2343 YPA_2344 IPR024989 Major facilitator superfamily associated domain YPA_2344 IPR026032 Phenylproprionate/maltose permease YPA_2344 IPR036259 YPA_2344 YPA_2345 IPR000758 Virulence-related outer membrane protein YPA_2345 IPR011250 Outer membrane protein/outer membrane enzyme PagP , beta-barrel YPA_2345 IPR027385 Outer membrane protein beta-barrel YPA_2347 IPR001085 Serine hydroxymethyltransferase YPA_2347 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 YPA_2347 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 YPA_2347 IPR015424 Pyridoxal phosphate-dependent transferase YPA_2347 IPR019798 Serine hydroxymethyltransferase, pyridoxal phosphate binding site YPA_2347 IPR039429 YPA_2347 YPA_2348 IPR000971 Globin YPA_2348 IPR001221 Phenol hydroxylase reductase YPA_2348 IPR001433 Oxidoreductase FAD/NAD(P)-binding YPA_2348 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase YPA_2348 IPR008333 Oxidoreductase, FAD-binding domain YPA_2348 IPR009050 Globin-like YPA_2348 IPR012292 Globin, structural domain YPA_2348 IPR017938 Riboflavin synthase-like beta-barrel YPA_2348 IPR023950 Flavohemoprotein YPA_2348 IPR039261 YPA_2348 YPA_2349 IPR032791 YPA_2349 YPA_2349 IPR036388 YPA_2349 YPA_2349 IPR036390 YPA_2349 YPA_2350 IPR032791 YPA_2350 YPA_2351 IPR002187 Nitrogen regulatory protein PII YPA_2351 IPR002332 Nitrogen regulatory protein P-II, urydylation site YPA_2351 IPR011322 Nitrogen regulatory PII-like, alpha/beta YPA_2351 IPR015867 Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal YPA_2351 IPR017918 Nitrogen regulatory protein PII, conserved site YPA_2352 IPR000132 Nitrilase/cyanide hydratase, conserved site YPA_2352 IPR003010 Carbon-nitrogen hydrolase YPA_2352 IPR003694 NAD(+) synthetase YPA_2352 IPR014445 Glutamine-dependent NAD(+) synthetase YPA_2352 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold YPA_2352 IPR022310 NAD/GMP synthase YPA_2352 IPR036526 YPA_2352 YPA_2353 IPR001789 Signal transduction response regulator, receiver domain YPA_2353 IPR002078 RNA polymerase sigma factor 54 interaction domain YPA_2353 IPR003593 AAA+ ATPase domain YPA_2353 IPR009057 Homeodomain-like YPA_2353 IPR011006 CheY-like superfamily YPA_2353 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 YPA_2353 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 YPA_2353 IPR025944 Sigma-54 interaction domain, conserved site YPA_2353 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPA_2354 IPR025262 Quorum-sensing regulator protein G YPA_2355 IPR003594 Histidine kinase-like ATPase, C-terminal domain YPA_2355 IPR003661 Signal transduction histidine kinase EnvZ-like, dimerisation/phosphoacceptor domain YPA_2355 IPR004358 Signal transduction histidine kinase-related protein, C-terminal YPA_2355 IPR036097 YPA_2355 YPA_2355 IPR036890 YPA_2355 YPA_2356 IPR002686 Transposase IS200-like YPA_2356 IPR036515 YPA_2356 YPA_2360 IPR010073 Phosphoribosylformylglycinamidine synthase YPA_2360 IPR010918 AIR synthase-related protein, C-terminal domain YPA_2360 IPR029062 Class I glutamine amidotransferase-like YPA_2360 IPR036604 YPA_2360 YPA_2360 IPR036676 YPA_2360 YPA_2360 IPR036921 YPA_2360 YPA_2361 IPR000189 Prokaryotic transglycosylase, active site YPA_2361 IPR001638 Extracellular solute-binding protein, family 3 YPA_2361 IPR008258 Lytic transglycosylase-like SLT domain YPA_2361 IPR023346 Lysozyme-like domain YPA_2361 IPR023703 Membrane-bound lytic murein transglycosylase F YPA_2362 IPR016192 APOBEC/CMP deaminase, zinc-binding YPA_2362 IPR016193 Cytidine deaminase-like YPA_2362 IPR028883 tRNA-specific adenosine deaminase YPA_2363 IPR006435 HAD-superfamily hydrolase, subfamily IF, YfhB YPA_2363 IPR023214 HAD-like domain YPA_2363 IPR036412 YPA_2363 YPA_2364 IPR001347 Sugar isomerase (SIS) YPA_2364 IPR005486 Glucokinase regulatory protein, conserved site YPA_2364 IPR005488 N-acetylmuramic acid 6-phosphate etherase MurQ YPA_2364 IPR009060 UBA-like YPA_2365 IPR000281 Helix-turn-helix protein RpiR YPA_2365 IPR001347 Sugar isomerase (SIS) YPA_2365 IPR009057 Homeodomain-like YPA_2365 IPR036388 YPA_2365 YPA_2366 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain YPA_2366 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site YPA_2367 IPR002686 Transposase IS200-like YPA_2367 IPR036515 YPA_2367 YPA_2368 IPR002582 Holo-[acyl carrier protein] synthase YPA_2368 IPR004568 Phosphopantethiene-protein transferase domain YPA_2368 IPR008278 4'-phosphopantetheinyl transferase superfamily YPA_2368 IPR037143 YPA_2368 YPA_2369 IPR004569 Pyridoxal phosphate (active vitamin B6) biosynthesis PdxJ YPA_2369 IPR013785 Aldolase-type TIM barrel YPA_2369 IPR036130 YPA_2369 YPA_2370 IPR001270 ClpA/B family YPA_2370 IPR002611 IstB-like ATP-binding protein YPA_2370 IPR003593 AAA+ ATPase domain YPA_2370 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPA_2370 IPR028350 DNA replication protein DnaC/insertion sequence putative ATP-binding protein YPA_2371 IPR001584 Integrase, catalytic core YPA_2371 IPR006120 Resolvase, HTH domain YPA_2371 IPR009057 Homeodomain-like YPA_2371 IPR012337 Ribonuclease H-like domain YPA_2372 IPR002509 Polysaccharide deacetylase YPA_2372 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel YPA_2373 IPR007210 ABC-type glycine betaine transport system, substrate-binding domain YPA_2374 IPR000515 MetI-like domain YPA_2374 IPR035906 YPA_2374 YPA_2375 IPR000644 CBS domain YPA_2375 IPR003439 ABC transporter-like YPA_2375 IPR003593 AAA+ ATPase domain YPA_2375 IPR005892 Glycine betaine transport ATP-binding subunit YPA_2375 IPR017871 ABC transporter, conserved site YPA_2375 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPA_2376 IPR000358 Ribonucleotide reductase small subunit YPA_2376 IPR009078 Ferritin-like superfamily YPA_2376 IPR012348 Ribonucleotide reductase-related YPA_2376 IPR026494 Ribonucleoside reductase subunit beta, NrdF YPA_2376 IPR030475 YPA_2376 YPA_2377 IPR000788 Ribonucleotide reductase large subunit, C-terminal YPA_2377 IPR008926 Ribonucleotide reductase R1 subunit, N-terminal YPA_2377 IPR013346 Ribonucleotide reductase, class I , alpha subunit YPA_2377 IPR013509 Ribonucleotide reductase large subunit, N-terminal YPA_2377 IPR013554 Ribonucleotide reductase N-terminal YPA_2377 IPR026459 Ribonucleotide reductase, class 1b, subunit NrdE YPA_2378 IPR004465 Ribonucleotide reductase Class Ib, NrdI YPA_2378 IPR020852 Ribonucleotide reductase, class Ib, NrdI, bacterial YPA_2378 IPR029039 Flavoprotein-like YPA_2379 IPR002109 Glutaredoxin YPA_2379 IPR011909 Glutaredoxin-like protein NrdH YPA_2379 IPR036249 YPA_2379 YPA_2380 IPR009435 Acid shock YPA_2380 IPR023497 Acid shock protein YPA_2381 IPR018994 Protein of unknown function DUF2002 YPA_2382 IPR001207 Transposase, mutator type YPA_2383 IPR018994 Protein of unknown function DUF2002 YPA_2384 IPR009587 Protein of unknown function DUF1198 YPA_2385 IPR006983 MbeD/MobD-like YPA_2386 IPR002059 Cold-shock protein, DNA-binding YPA_2386 IPR011129 Cold shock protein YPA_2386 IPR012156 Cold shock, CspA YPA_2386 IPR012340 Nucleic acid-binding, OB-fold YPA_2386 IPR019844 Cold-shock conserved site YPA_2387 IPR000914 Bacterial extracellular solute-binding protein, family 5 YPA_2387 IPR030678 YPA_2387 YPA_2388 IPR000515 MetI-like domain YPA_2388 IPR035906 YPA_2388 YPA_2389 IPR000515 MetI-like domain YPA_2389 IPR035906 YPA_2389 YPA_2390 IPR003439 ABC transporter-like YPA_2390 IPR003593 AAA+ ATPase domain YPA_2390 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPA_2391 IPR003439 ABC transporter-like YPA_2391 IPR003593 AAA+ ATPase domain YPA_2391 IPR017871 ABC transporter, conserved site YPA_2391 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPA_2392 IPR002026 Urease, gamma/gamma-beta subunit YPA_2392 IPR012010 Urease, gamma subunit YPA_2392 IPR036463 YPA_2392 YPA_2393 IPR002019 Urease, beta subunit YPA_2393 IPR036461 YPA_2393 YPA_2394 IPR005848 Urease, alpha subunit YPA_2394 IPR006680 Amidohydrolase 1 YPA_2394 IPR011059 Metal-dependent hydrolase, composite domain YPA_2394 IPR011612 Urease alpha-subunit, N-terminal domain YPA_2394 IPR017950 Urease active site YPA_2394 IPR029754 Urease nickel binding site YPA_2394 IPR032466 YPA_2394 YPA_2395 IPR004029 UreE urease accessory, N-terminal YPA_2395 IPR007864 Urease accessory protein UreE, C-terminal domain YPA_2395 IPR012406 Urease accessory protein UreE YPA_2395 IPR036118 YPA_2395 YPA_2396 IPR002639 Urease accessory protein UreF YPA_2396 IPR038277 YPA_2396 YPA_2397 IPR003495 CobW/HypB/UreG domain YPA_2397 IPR004400 Urease accessory protein UreG YPA_2397 IPR012202 [NiFe]-hydrogenase/urease maturation factor, Ni2-binding GTPase YPA_2397 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPA_2398 IPR002669 Urease accessory protein UreD YPA_2400 IPR004937 Urea transporter YPA_2400 IPR017807 Urea transporter, bacteria YPA_2400 IPR029020 Ammonium/urea transporter YPA_2401 IPR004688 Nickel/cobalt transporter, high-affinity, bacteria YPA_2401 IPR011541 Nickel/cobalt transporter, high-affinity YPA_2402 IPR010486 HNS-dependent expression A/B YPA_2402 IPR028623 HNS-dependent expression B YPA_2402 IPR036831 YPA_2402 YPA_2402 IPR038303 YPA_2402 YPA_2403 IPR003148 Regulator of K+ conductance, N-terminal YPA_2403 IPR013099 Two pore domain potassium channel domain YPA_2403 IPR036291 YPA_2403 YPA_2404 IPR003691 Putative fluoride ion transporter CrcB YPA_2405 IPR003691 Putative fluoride ion transporter CrcB YPA_2407 IPR003501 Phosphotransferase system, EIIB component, type 2/3 YPA_2407 IPR036095 YPA_2407 YPA_2408 IPR003352 Phosphotransferase system, EIIC YPA_2408 IPR004501 Phosphotransferase system, EIIC component, type 3 YPA_2408 IPR004796 Phosphotransferase system, cellobiose-type IIC component YPA_2409 IPR003188 Phosphotransferase system, lactose/cellobiose-specific IIA subunit YPA_2409 IPR036542 YPA_2409 YPA_2410 IPR009057 Homeodomain-like YPA_2410 IPR011051 RmlC-like cupin domain YPA_2410 IPR013096 Cupin 2, conserved barrel YPA_2410 IPR014710 RmlC-like jelly roll fold YPA_2410 IPR018060 DNA binding HTH domain, AraC-type YPA_2410 IPR018062 HTH domain AraC-type, conserved site YPA_2410 IPR020449 Transcription regulator HTH, AraC- type YPA_2411 IPR006879 Uncharacterised protein family UPF0249/HpnK YPA_2411 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel YPA_2411 IPR022948 Uncharacterised protein family UPF0249 YPA_2413 IPR005621 Regulation modulator SeqA YPA_2413 IPR010985 Ribbon-helix-helix YPA_2413 IPR013321 Arc-type ribbon-helix-helix YPA_2413 IPR026577 Replication modulator SeqA, C-terminal DNA-binding domain YPA_2413 IPR033761 YPA_2413 YPA_2413 IPR036835 YPA_2413 YPA_2414 IPR005843 Alpha-D-phosphohexomutase, C-terminal YPA_2414 IPR005844 Alpha-D-phosphohexomutase, alpha/beta/alpha domain I YPA_2414 IPR005845 Alpha-D-phosphohexomutase, alpha/beta/alpha domain II YPA_2414 IPR005846 Alpha-D-phosphohexomutase, alpha/beta/alpha domain III YPA_2414 IPR005852 Phosphoglucomutase, alpha-D-glucose specific YPA_2414 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III YPA_2414 IPR016066 Alpha-D-phosphohexomutase, conserved site YPA_2414 IPR036900 YPA_2414 YPA_2417 IPR000620 Drug/metabolite transporter YPA_2418 IPR001789 Signal transduction response regulator, receiver domain YPA_2418 IPR001867 Signal transduction response regulator, C-terminal YPA_2418 IPR011006 CheY-like superfamily YPA_2418 IPR036388 YPA_2418 YPA_2419 IPR003018 GAF domain YPA_2419 IPR003594 Histidine kinase-like ATPase, C-terminal domain YPA_2419 IPR003661 Signal transduction histidine kinase EnvZ-like, dimerisation/phosphoacceptor domain YPA_2419 IPR003852 Signal transduction histidine kinase, osmosensitive K+ channel sensor, N-terminal YPA_2419 IPR004358 Signal transduction histidine kinase-related protein, C-terminal YPA_2419 IPR025201 Sensor protein KdpD, transmembrane domain YPA_2419 IPR029016 GAF domain-like YPA_2419 IPR036097 YPA_2419 YPA_2419 IPR036890 YPA_2419 YPA_2419 IPR038318 YPA_2419 YPA_2420 IPR003820 Potassium-transporting ATPase C chain YPA_2421 IPR001757 Cation-transporting P-type ATPase YPA_2421 IPR006391 Potassium-transporting P-type ATPase, B chain, subfamily IA YPA_2421 IPR008250 P-type ATPase, A domain YPA_2421 IPR018303 P-type ATPase, phosphorylation site YPA_2421 IPR023298 P-type ATPase, transmembrane domain YPA_2421 IPR023299 P-type ATPase, cytoplasmic domain N YPA_2421 IPR036412 YPA_2421 YPA_2422 IPR004623 Potassium-transporting ATPase A chain YPA_2423 IPR011726 K+ transporting P-type ATPase, F subunit YPA_2424 IPR019663 Uncharacterised protein YbfA YPA_2425 IPR013560 Domain of unknown function DUF1722 YPA_2426 IPR002081 Cryptochrome/DNA photolyase, class 1 YPA_2426 IPR005101 DNA photolyase, FAD-binding/Cryptochrome, C-terminal YPA_2426 IPR006050 DNA photolyase, N-terminal YPA_2426 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold YPA_2426 IPR018394 Cryptochrome/DNA photolyase, class 1 conserved site, C-terminal YPA_2426 IPR036134 YPA_2426 YPA_2426 IPR036155 YPA_2426 YPA_2427 IPR000396 Cyclic-AMP phosphodiesterase, class-II YPA_2427 IPR024225 Cyclic-AMP phosphodiesterase class-II, conserved site YPA_2427 IPR036866 YPA_2427 YPA_2428 IPR002678 GTP cyclohydrolase 1 type 2/Nif3 YPA_2428 IPR036069 YPA_2428 YPA_2429 IPR003833 Allophanate hydrolase subunit 1 YPA_2429 IPR010016 Sensor histidine kinase inhibitor, KipI family YPA_2429 IPR029000 Cyclophilin-like domain YPA_2431 IPR003778 Allophanate hydrolase subunit 2 YPA_2431 IPR029000 Cyclophilin-like domain YPA_2432 IPR005501 Uncharacterised protein family UPF0271, LamB/YcsF YPA_2432 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel YPA_2433 IPR010374 Protein of unknown function DUF969 YPA_2434 IPR009323 Protein of unknown function DUF979 YPA_2435 IPR009323 Protein of unknown function DUF979 YPA_2436 IPR000816 Peptidase C15, pyroglutamyl peptidase I YPA_2436 IPR016125 Peptidase C15, pyroglutamyl peptidase I-like YPA_2436 IPR029762 Pyroglutamyl peptidase I, bacterial-type YPA_2436 IPR033693 YPA_2436 YPA_2436 IPR033694 YPA_2436 YPA_2436 IPR036440 YPA_2436 YPA_2437 IPR002043 Uracil-DNA glycosylase YPA_2437 IPR005122 Uracil-DNA glycosylase-like YPA_2437 IPR018085 Uracil-DNA glycosylase, active site YPA_2437 IPR036895 YPA_2437 YPA_2438 IPR001150 Glycine radical domain YPA_2438 IPR011140 Autonomous glycyl radical cofactor GrcA YPA_2438 IPR019777 Formate C-acetyltransferase glycine radical, conserved site YPA_2439 IPR024499 Protein of unknown function DUF2974 YPA_2439 IPR029058 Alpha/Beta hydrolase fold YPA_2440 IPR002110 Ankyrin repeat YPA_2440 IPR036770 YPA_2440 YPA_2442 IPR000629 RNA helicase, ATP-dependent, DEAD-box, conserved site YPA_2442 IPR001650 Helicase, C-terminal YPA_2442 IPR011545 DEAD/DEAH box helicase domain YPA_2442 IPR014001 Helicase, superfamily 1/2, ATP-binding domain YPA_2442 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPA_2442 IPR028621 ATP-dependent RNA helicase SrmB YPA_2443 IPR002052 DNA methylase, N-6 adenine-specific, conserved site YPA_2443 IPR007848 Methyltransferase small domain YPA_2443 IPR022882 tRNA1(Val) (adenine(37)-N6)-methyltransferase YPA_2443 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase-like YPA_2444 IPR003953 FAD binding domain YPA_2444 IPR005288 L-aspartate oxidase YPA_2444 IPR015939 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal YPA_2444 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain YPA_2444 IPR036188 YPA_2444 YPA_2444 IPR037099 YPA_2444 YPA_2445 IPR000838 RNA polymerase sigma factor 70, ECF, conserved site YPA_2445 IPR007627 RNA polymerase sigma-70 region 2 YPA_2445 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 YPA_2445 IPR013324 RNA polymerase sigma factor, region 3/4 YPA_2445 IPR013325 RNA polymerase sigma factor, region 2 YPA_2445 IPR014284 RNA polymerase sigma-70 like domain YPA_2445 IPR014286 RNA polymerase sigma-70 RpoE type YPA_2445 IPR036388 YPA_2445 YPA_2446 IPR005572 Anti sigma-E protein RseA, N-terminal YPA_2446 IPR005573 Anti sigma-E protein RseA, C-terminal YPA_2446 IPR026279 Sigma-E factor negative regulatory protein RseA YPA_2446 IPR036147 YPA_2446 YPA_2447 IPR005588 MucB/RseB YPA_2447 IPR033434 YPA_2447 YPA_2447 IPR033436 YPA_2447 YPA_2447 IPR038484 YPA_2447 YPA_2448 IPR026268 Protein RseC YPA_2450 IPR000640 Translation elongation factor EFG, V domain YPA_2450 IPR000795 Elongation factor, GTP-binding domain YPA_2450 IPR004161 Translation elongation factor EFTu/EF1A, domain 2 YPA_2450 IPR005225 Small GTP-binding protein domain YPA_2450 IPR006297 Elongation factor 4 YPA_2450 IPR013842 GTP-binding protein LepA, C-terminal YPA_2450 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPA_2450 IPR031157 YPA_2450 YPA_2450 IPR035647 YPA_2450 YPA_2450 IPR038363 YPA_2450 YPA_2451 IPR000223 Peptidase S26A, signal peptidase I YPA_2451 IPR015927 Peptidase S24/S26A/S26B/S26C YPA_2451 IPR019533 Peptidase S26 YPA_2451 IPR019756 Peptidase S26A, signal peptidase I, serine active site YPA_2451 IPR019757 Peptidase S26A, signal peptidase I, lysine active site YPA_2451 IPR019758 Peptidase S26A, signal peptidase I, conserved site YPA_2451 IPR036286 YPA_2451 YPA_2452 IPR000999 Ribonuclease III domain YPA_2452 IPR011907 Ribonuclease III YPA_2452 IPR014720 Double-stranded RNA-binding domain YPA_2452 IPR036389 YPA_2452 YPA_2453 IPR004044 K Homology domain, type 2 YPA_2453 IPR005225 Small GTP-binding protein domain YPA_2453 IPR005662 GTP-binding protein Era YPA_2453 IPR006073 GTP binding domain YPA_2453 IPR009019 K homology domain, prokaryotic type YPA_2453 IPR015946 K homology domain-like, alpha/beta YPA_2453 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPA_2454 IPR003717 Recombination protein O, RecO YPA_2454 IPR012340 Nucleic acid-binding, OB-fold YPA_2454 IPR022572 DNA replication/recombination mediator RecO, N-terminal YPA_2454 IPR037278 YPA_2454 YPA_2455 IPR001584 Integrase, catalytic core YPA_2455 IPR006120 Resolvase, HTH domain YPA_2455 IPR009057 Homeodomain-like YPA_2455 IPR012337 Ribonuclease H-like domain YPA_2456 IPR001270 ClpA/B family YPA_2456 IPR002611 IstB-like ATP-binding protein YPA_2456 IPR003593 AAA+ ATPase domain YPA_2456 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPA_2456 IPR028350 DNA replication protein DnaC/insertion sequence putative ATP-binding protein YPA_2457 IPR010998 Integrase, Lambda-type, N-terminal YPA_2457 IPR025166 Domain of unknown function DUF4102 YPA_2457 IPR038488 YPA_2457 YPA_2458 IPR002514 Transposase IS3/IS911family YPA_2458 IPR009057 Homeodomain-like YPA_2460 IPR000073 Alpha/beta hydrolase fold-1 YPA_2460 IPR029058 Alpha/Beta hydrolase fold YPA_2461 IPR002145 Ribbon-helix-helix protein, copG YPA_2462 IPR001226 Flavodoxin, conserved site YPA_2462 IPR008254 Flavodoxin/nitric oxide synthase YPA_2462 IPR010086 Flavodoxin, long chain YPA_2462 IPR029039 Flavoprotein-like YPA_2463 IPR002481 Ferric-uptake regulator YPA_2463 IPR036388 YPA_2463 YPA_2463 IPR036390 YPA_2463 YPA_2464 IPR004867 Chitobiase/beta-hexosaminidase C-terminal domain YPA_2464 IPR013783 Immunoglobulin-like fold YPA_2464 IPR014756 Immunoglobulin E-set YPA_2464 IPR015882 Beta-hexosaminidase, bacteial type, N-terminal YPA_2464 IPR015883 Glycoside hydrolase family 20, catalytic core YPA_2464 IPR017853 Glycoside hydrolase, superfamily YPA_2464 IPR025705 Beta-hexosaminidase YPA_2464 IPR029018 Chitobiase/beta-hexosaminidase domain 2-like YPA_2465 IPR004866 Chitobiase/beta-hexosaminidases, N-terminal domain YPA_2465 IPR008965 Carbohydrate-binding domain YPA_2465 IPR012291 Cellulose-binding family II/chitobiase, carbohydrate-binding domain YPA_2466 IPR005318 Outer membrane porin, bacterial YPA_2466 IPR023614 Porin domain YPA_2467 IPR000924 Glutamyl/glutaminyl-tRNA synthetase YPA_2467 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site YPA_2467 IPR004514 Glutamine-tRNA synthetase YPA_2467 IPR011035 Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain YPA_2467 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold YPA_2467 IPR020056 Ribosomal protein L25/Gln-tRNA synthetase, beta-barrel domain YPA_2467 IPR020058 Glutamyl/glutaminyl-tRNA synthetase, class Ib, catalytic domain YPA_2467 IPR020059 Glutamyl/glutaminyl-tRNA synthetase, class Ib, anti-codon binding domain YPA_2467 IPR020061 Glutamyl/glutaminyl-tRNA synthetase, class Ib, alpha-bundle domain YPA_2467 IPR022861 Glutamine-tRNA ligase, bacterial YPA_2468 IPR002686 Transposase IS200-like YPA_2468 IPR036515 YPA_2468 YPA_2469 IPR001127 Phosphotransferase system, sugar-specific permease EIIA type 1 YPA_2469 IPR001996 Phosphotransferase system, IIB component, type 1 YPA_2469 IPR003352 Phosphotransferase system, EIIC YPA_2469 IPR010974 Phosphotransferase system, N-acetylglucosamine-specific IIBC component YPA_2469 IPR011055 Duplicated hybrid motif YPA_2469 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site YPA_2469 IPR036878 YPA_2469 YPA_2470 IPR004547 Glucosamine-6-phosphate isomerase YPA_2470 IPR006148 Glucosamine/galactosamine-6-phosphate isomerase YPA_2470 IPR018321 Glucosamine-6-phosphate isomerase, conserved site YPA_2470 IPR037171 YPA_2470 YPA_2471 IPR003764 N-acetylglucosamine-6-phosphate deacetylase YPA_2471 IPR006680 Amidohydrolase 1 YPA_2471 IPR011059 Metal-dependent hydrolase, composite domain YPA_2471 IPR032466 YPA_2471 YPA_2472 IPR000600 ROK YPA_2472 IPR000835 MarR-type HTH domain YPA_2472 IPR036388 YPA_2472 YPA_2472 IPR036390 YPA_2472 YPA_2473 IPR006357 HAD-superfamily hydrolase, subfamily IIA YPA_2473 IPR023214 HAD-like domain YPA_2473 IPR036412 YPA_2473 YPA_2474 IPR001962 Asparagine synthase YPA_2474 IPR006426 Asparagine synthase, glutamine-hydrolyzing YPA_2474 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold YPA_2474 IPR017932 Glutamine amidotransferase type 2 domain YPA_2474 IPR029055 Nucleophile aminohydrolases, N-terminal YPA_2476 IPR002938 Monooxygenase, FAD-binding YPA_2476 IPR010971 Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/UbiI/COQ6 YPA_2476 IPR036188 YPA_2476 YPA_2477 IPR002792 TRAM domain YPA_2477 IPR005839 Methylthiotransferase YPA_2477 IPR006463 tRNA-i(6)A37 modification enzyme MiaB YPA_2477 IPR006638 Elongator protein 3/MiaB/NifB YPA_2477 IPR007197 Radical SAM YPA_2477 IPR013848 Methylthiotransferase, N-terminal YPA_2477 IPR020612 Methylthiotransferase, conserved site YPA_2477 IPR023404 Radical SAM, alpha/beta horseshoe YPA_2477 IPR038135 YPA_2477 YPA_2478 IPR003714 PhoH-like protein YPA_2478 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPA_2479 IPR002036 Endoribonuclease YbeY YPA_2479 IPR020549 Endoribonuclease YbeY, conserved site YPA_2479 IPR023091 Metalloprotease catalytic domain, predicted YPA_2480 IPR000644 CBS domain YPA_2480 IPR005170 Transporter-associated domain YPA_2480 IPR016169 CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2 YPA_2480 IPR036318 YPA_2480 YPA_2481 IPR003010 Carbon-nitrogen hydrolase YPA_2481 IPR004563 Apolipoprotein N-acyltransferase YPA_2481 IPR036526 YPA_2481 YPA_2482 IPR001638 Extracellular solute-binding protein, family 3 YPA_2483 IPR000515 MetI-like domain YPA_2483 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain, His/Glu/Gln/Arg/opine family YPA_2483 IPR035906 YPA_2483 YPA_2484 IPR000515 MetI-like domain YPA_2484 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain, His/Glu/Gln/Arg/opine family YPA_2484 IPR035906 YPA_2484 YPA_2485 IPR003439 ABC transporter-like YPA_2485 IPR003593 AAA+ ATPase domain YPA_2485 IPR017871 ABC transporter, conserved site YPA_2485 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPA_2485 IPR030679 YPA_2485 YPA_2486 IPR009912 Protein of unknown function DUF1451 YPA_2487 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site YPA_2487 IPR002300 Aminoacyl-tRNA synthetase, class Ia YPA_2487 IPR002302 Leucine-tRNA ligase YPA_2487 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain YPA_2487 IPR009080 Aminoacyl-tRNA synthetase, class 1a, anticodon-binding YPA_2487 IPR013155 Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding YPA_2487 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold YPA_2487 IPR025709 Leucyl-tRNA synthetase, editing domain YPA_2488 IPR007485 Lipopolysaccharide assembly, LptE YPA_2489 IPR005790 DNA polymerase III, delta subunit YPA_2489 IPR008921 DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal YPA_2489 IPR010372 DNA polymerase III, delta YPA_2489 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPA_2489 IPR032780 YPA_2489 YPA_2490 IPR004821 Cytidyltransferase-like domain YPA_2490 IPR005248 Probable nicotinate-nucleotide adenylyltransferase YPA_2490 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold YPA_2491 IPR004394 Protein Iojap/ribosomal silencing factor RsfS YPA_2492 IPR003742 SPOUT methyltransferase, predicted YPA_2492 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal YPA_2492 IPR029028 Alpha/beta knot methyltransferases YPA_2493 IPR001460 Penicillin-binding protein, transpeptidase YPA_2493 IPR005311 Penicillin-binding protein, dimerisation domain YPA_2493 IPR012338 Beta-lactamase/transpeptidase-like YPA_2493 IPR017790 Penicillin-binding protein 2 YPA_2493 IPR036138 YPA_2493 YPA_2494 IPR001182 Cell cycle protein FtsW/RodA YPA_2494 IPR011923 Rod shape-determining protein RodA YPA_2494 IPR018365 Cell cycle, FtsW / RodA / SpoVE, conserved site YPA_2495 IPR007730 Sporulation-related domain YPA_2495 IPR009009 RlpA-like double-psi beta-barrel domain YPA_2495 IPR012997 Rare lipoprotein A, bacterial YPA_2495 IPR034718 YPA_2495 YPA_2495 IPR036680 YPA_2495 YPA_2495 IPR036908 YPA_2495 YPA_2496 IPR001584 Integrase, catalytic core YPA_2496 IPR006120 Resolvase, HTH domain YPA_2496 IPR009057 Homeodomain-like YPA_2496 IPR012337 Ribonuclease H-like domain YPA_2497 IPR001270 ClpA/B family YPA_2497 IPR002611 IstB-like ATP-binding protein YPA_2497 IPR003593 AAA+ ATPase domain YPA_2497 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPA_2497 IPR028350 DNA replication protein DnaC/insertion sequence putative ATP-binding protein YPA_2498 IPR001967 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A, N-terminal YPA_2498 IPR012338 Beta-lactamase/transpeptidase-like YPA_2498 IPR012907 Peptidase S11, D-Ala-D-Ala carboxypeptidase A, C-terminal YPA_2498 IPR015956 Penicillin-binding protein-associated YPA_2498 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A YPA_2498 IPR037167 YPA_2498 YPA_2499 IPR007454 Uncharacterised protein family UPF0250 YPA_2499 IPR027471 YbeD-like domain YPA_2500 IPR000544 Octanoyltransferase YPA_2500 IPR004143 Biotin/lipoate A/B protein ligase YPA_2500 IPR020605 Octanoyltransferase, conserved site YPA_2501 IPR003698 Lipoyl synthase YPA_2501 IPR006638 Elongator protein 3/MiaB/NifB YPA_2501 IPR007197 Radical SAM YPA_2501 IPR013785 Aldolase-type TIM barrel YPA_2501 IPR031691 YPA_2501 YPA_2502 IPR003369 Sec-independent protein translocase protein TatA/B/E YPA_2502 IPR006312 Sec-independent protein translocase protein TatA/E YPA_2502 IPR024905 Sec-independent protein translocase protein TatE YPA_2503 IPR003691 Putative fluoride ion transporter CrcB YPA_2504 IPR002059 Cold-shock protein, DNA-binding YPA_2504 IPR011129 Cold shock protein YPA_2504 IPR012156 Cold shock, CspA YPA_2504 IPR012340 Nucleic acid-binding, OB-fold YPA_2504 IPR019844 Cold-shock conserved site YPA_2505 IPR002059 Cold-shock protein, DNA-binding YPA_2505 IPR012340 Nucleic acid-binding, OB-fold YPA_2506 IPR000792 Transcription regulator LuxR, C-terminal YPA_2506 IPR016032 Signal transduction response regulator, C-terminal effector YPA_2506 IPR036388 YPA_2506 YPA_2509 IPR015065 Glycogen synthesis protein YPA_2509 IPR036745 YPA_2509 YPA_2510 IPR007138 Antibiotic biosynthesis monooxygenase-like domain YPA_2510 IPR011008 Dimeric alpha-beta barrel YPA_2511 IPR003439 ABC transporter-like YPA_2511 IPR003593 AAA+ ATPase domain YPA_2511 IPR011527 ABC transporter type 1, transmembrane domain YPA_2511 IPR017871 ABC transporter, conserved site YPA_2511 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPA_2511 IPR036640 YPA_2511 YPA_2513 IPR011051 RmlC-like cupin domain YPA_2513 IPR014710 RmlC-like jelly roll fold YPA_2513 IPR021120 KduI/IolB isomerase YPA_2513 IPR024203 5-deoxy-glucuronate isomerase, IolB YPA_2514 IPR013022 Xylose isomerase-like, TIM barrel domain YPA_2514 IPR030823 YPA_2514 YPA_2514 IPR036237 YPA_2514 YPA_2515 IPR013785 Aldolase-type TIM barrel YPA_2515 IPR018659 Protein of unknown function DUF2090 YPA_2516 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site YPA_2516 IPR011611 Carbohydrate kinase PfkB YPA_2516 IPR023314 Tagatose-6-phosphate kinase/1-phosphofructokinase N-terminal domain YPA_2516 IPR029056 Ribokinase-like YPA_2516 IPR030830 YPA_2516 YPA_2517 IPR000683 Oxidoreductase, N-terminal YPA_2517 IPR004104 Oxidoreductase, C-terminal YPA_2517 IPR036291 YPA_2517 YPA_2518 IPR001851 ABC transporter, permease YPA_2519 IPR003439 ABC transporter-like YPA_2519 IPR003593 AAA+ ATPase domain YPA_2519 IPR017871 ABC transporter, conserved site YPA_2519 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPA_2520 IPR025997 Periplasmic binding protein domain YPA_2520 IPR028082 Periplasmic binding protein-like I YPA_2521 IPR004104 Oxidoreductase, C-terminal YPA_2522 IPR000683 Oxidoreductase, N-terminal YPA_2522 IPR036291 YPA_2522 YPA_2523 IPR000399 TPP-binding enzyme, conserved site YPA_2523 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding YPA_2523 IPR012000 Thiamine pyrophosphate enzyme, central domain YPA_2523 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain YPA_2523 IPR029035 DHS-like NAD/FAD-binding domain YPA_2523 IPR029061 Thiamin diphosphate-binding fold YPA_2523 IPR030817 YPA_2523 YPA_2524 IPR010061 Methylmalonate-semialdehyde dehydrogenase YPA_2524 IPR015590 Aldehyde dehydrogenase domain YPA_2524 IPR016160 Aldehyde dehydrogenase, cysteine active site YPA_2524 IPR016161 Aldehyde/histidinol dehydrogenase YPA_2524 IPR016162 Aldehyde dehydrogenase, N-terminal YPA_2524 IPR016163 Aldehyde dehydrogenase, C-terminal YPA_2525 IPR000281 Helix-turn-helix protein RpiR YPA_2525 IPR001347 Sugar isomerase (SIS) YPA_2525 IPR009057 Homeodomain-like YPA_2525 IPR036388 YPA_2525 YPA_2527 IPR009898 Protein of unknown function DUF1440 YPA_2528 IPR001599 Alpha-2-macroglobulin YPA_2528 IPR002890 Alpha-2-macroglobulin, N-terminal YPA_2528 IPR008930 Terpenoid cyclases/protein prenyltransferase alpha-alpha toroid YPA_2528 IPR011625 Alpha-2-macroglobulin, N-terminal 2 YPA_2529 IPR001264 Glycosyl transferase, family 51 YPA_2529 IPR023346 Lysozyme-like domain YPA_2529 IPR036950 YPA_2529 YPA_2530 IPR001207 Transposase, mutator type YPA_2531 IPR001460 Penicillin-binding protein, transpeptidase YPA_2531 IPR009647 Penicillin-binding, C-terminal YPA_2531 IPR011815 Penicillin-binding protein 1C YPA_2531 IPR012338 Beta-lactamase/transpeptidase-like YPA_2532 IPR010982 Lambda repressor-like, DNA-binding domain YPA_2532 IPR038722 YPA_2532 YPA_2535 IPR010665 Protein of unknown function DUF1240 YPA_2537 IPR010665 Protein of unknown function DUF1240 YPA_2538 IPR008514 Type VI secretion system effector, Hcp YPA_2538 IPR036624 YPA_2538 YPA_2541 IPR003991 Pertactin virulence factor family YPA_2541 IPR004899 Pertactin, central region YPA_2541 IPR005546 Autotransporter beta-domain YPA_2541 IPR006315 Outer membrane autotransporter barrel YPA_2541 IPR011050 Pectin lyase fold/virulence factor YPA_2541 IPR036709 YPA_2541 YPA_2542 IPR021561 Protein of unknown function DUF2893 YPA_2542 IPR033455 YPA_2542 YPA_2544 IPR001207 Transposase, mutator type YPA_2546 IPR018677 Protein of unknown function DUF2157, membrane YPA_2546 IPR025513 Domain of unknown function DUF4401 YPA_2547 IPR025833 GDYXXLXY protein YPA_2548 IPR001764 Glycoside hydrolase, family 3, N-terminal YPA_2548 IPR002772 Glycoside hydrolase family 3 C-terminal domain YPA_2548 IPR013783 Immunoglobulin-like fold YPA_2548 IPR017853 Glycoside hydrolase, superfamily YPA_2548 IPR019800 Glycoside hydrolase, family 3, active site YPA_2548 IPR026891 Fibronectin type III-like domain YPA_2548 IPR036881 YPA_2548 YPA_2548 IPR036962 YPA_2548 YPA_2551 IPR018170 Aldo/keto reductase, conserved site YPA_2551 IPR020471 Aldo/keto reductase subgroup YPA_2551 IPR023210 NADP-dependent oxidoreductase domain YPA_2551 IPR036812 YPA_2551 YPA_2552 IPR023210 NADP-dependent oxidoreductase domain YPA_2552 IPR036812 YPA_2552 YPA_2553 IPR000847 Transcription regulator HTH, LysR YPA_2553 IPR005119 LysR, substrate-binding YPA_2553 IPR036388 YPA_2553 YPA_2553 IPR036390 YPA_2553 YPA_2554 IPR001584 Integrase, catalytic core YPA_2554 IPR006120 Resolvase, HTH domain YPA_2554 IPR009057 Homeodomain-like YPA_2554 IPR012337 Ribonuclease H-like domain YPA_2555 IPR001270 ClpA/B family YPA_2555 IPR002611 IstB-like ATP-binding protein YPA_2555 IPR003593 AAA+ ATPase domain YPA_2555 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPA_2555 IPR028350 DNA replication protein DnaC/insertion sequence putative ATP-binding protein YPA_2558 IPR000340 Dual specificity phosphatase, catalytic domain YPA_2558 IPR003595 Protein-tyrosine phosphatase, catalytic YPA_2558 IPR020422 Dual specificity phosphatase, subgroup, catalytic domain YPA_2558 IPR026841 YPA_2558 YPA_2558 IPR029021 Protein-tyrosine phosphatase-like YPA_2559 IPR022742 Putative lysophospholipase YPA_2559 IPR022744 Methyltransferase domain, putative YPA_2559 IPR029058 Alpha/Beta hydrolase fold YPA_2559 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase-like YPA_2560 IPR002123 Phospholipid/glycerol acyltransferase YPA_2561 IPR000374 Phosphatidate cytidylyltransferase YPA_2562 IPR000462 CDP-alcohol phosphatidyltransferase YPA_2565 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase YPA_2565 IPR020630 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain YPA_2565 IPR020631 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain YPA_2565 IPR020867 Tetrahydrofolate dehydrogenase/cyclohydrolase, conserved site YPA_2565 IPR036291 YPA_2565 YPA_2566 IPR036986 YPA_2566 YPA_2567 IPR002686 Transposase IS200-like YPA_2567 IPR036515 YPA_2567 YPA_2568 IPR009080 Aminoacyl-tRNA synthetase, class 1a, anticodon-binding YPA_2568 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold YPA_2568 IPR015273 Cysteinyl-tRNA synthetase, class Ia, DALR YPA_2568 IPR015803 Cysteine-tRNA ligase YPA_2568 IPR024909 Cysteinyl-tRNA synthetase/mycothiol ligase YPA_2568 IPR032678 YPA_2568 YPA_2569 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain YPA_2569 IPR020892 Cyclophilin-type peptidyl-prolyl cis-trans isomerase, conserved site YPA_2569 IPR024936 Cyclophilin-type peptidyl-prolyl cis-trans isomerase YPA_2569 IPR029000 Cyclophilin-like domain YPA_2570 IPR004843 Calcineurin-like phosphoesterase domain, apaH type YPA_2570 IPR010138 UDP-2,3-diacylglucosamine hydrolase YPA_2570 IPR029052 Metallo-dependent phosphatase-like YPA_2571 IPR000031 Phosphoribosylaminoimidazole carboxylase PurE domain YPA_2571 IPR024694 N5-carboxyaminoimidazole ribonucleotide mutase PurE YPA_2571 IPR033747 YPA_2571 YPA_2571 IPR035893 YPA_2571 YPA_2572 IPR003135 ATP-grasp fold, ATP-dependent carboxylate-amine ligase-type YPA_2572 IPR005875 Phosphoribosylaminoimidazole carboxylase, ATPase subunit YPA_2572 IPR011054 Rudiment single hybrid motif YPA_2572 IPR013815 ATP-grasp fold, subdomain 1 YPA_2572 IPR016185 Pre-ATP-grasp domain YPA_2573 IPR003838 Permease FtsX-like YPA_2574 IPR003439 ABC transporter-like YPA_2574 IPR003593 AAA+ ATPase domain YPA_2574 IPR017871 ABC transporter, conserved site YPA_2574 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPA_2575 IPR008265 Lipase, GDSL, active site YPA_2575 IPR013830 YPA_2575 YPA_2575 IPR036514 YPA_2575 YPA_2576 IPR002347 Glucose/ribitol dehydrogenase YPA_2576 IPR020904 Short-chain dehydrogenase/reductase, conserved site YPA_2576 IPR036291 YPA_2576 YPA_2577 IPR011990 Tetratricopeptide-like helical domain YPA_2577 IPR013766 Thioredoxin domain YPA_2577 IPR036249 YPA_2577 YPA_2578 IPR001107 Band 7 protein YPA_2578 IPR001972 Stomatin family YPA_2578 IPR018080 Band 7/stomatin-like, conserved site YPA_2578 IPR036013 YPA_2578 YPA_2579 IPR002810 NfeD-like, C-terminal domain YPA_2580 IPR000551 MerR-type HTH domain YPA_2580 IPR009061 DNA binding domain, putative YPA_2580 IPR011789 Cu(I)-responsive transcriptional regulator YPA_2581 IPR001757 Cation-transporting P-type ATPase YPA_2581 IPR006121 Heavy metal-associated domain, HMA YPA_2581 IPR008250 P-type ATPase, A domain YPA_2581 IPR017969 Heavy-metal-associated, conserved site YPA_2581 IPR018303 P-type ATPase, phosphorylation site YPA_2581 IPR023214 HAD-like domain YPA_2581 IPR023298 P-type ATPase, transmembrane domain YPA_2581 IPR023299 P-type ATPase, cytoplasmic domain N YPA_2581 IPR027256 Cation-transporting P-type ATPase, subfamily IB YPA_2581 IPR036163 YPA_2581 YPA_2581 IPR036412 YPA_2581 YPA_2582 IPR002816 Pheromone shutdown, TraB YPA_2583 IPR004369 Prolyl-tRNA editing protein, YbaK/EbsC YPA_2583 IPR007214 YbaK/aminoacyl-tRNA synthetase-associated domain YPA_2583 IPR036754 YPA_2583 YPA_2585 IPR006179 5'-Nucleotidase/apyrase YPA_2585 IPR008334 5'-Nucleotidase, C-terminal YPA_2585 IPR036907 YPA_2585 YPA_2586 IPR004843 Calcineurin-like phosphoesterase domain, apaH type YPA_2586 IPR006146 5'-Nucleotidase, conserved site YPA_2586 IPR006179 5'-Nucleotidase/apyrase YPA_2586 IPR029052 Metallo-dependent phosphatase-like YPA_2587 IPR006146 5'-Nucleotidase, conserved site YPA_2587 IPR029052 Metallo-dependent phosphatase-like YPA_2588 IPR011701 Major facilitator superfamily YPA_2588 IPR036259 YPA_2588 YPA_2589 IPR003148 Regulator of K+ conductance, N-terminal YPA_2589 IPR004771 K+/H+ exchanger YPA_2589 IPR006153 Cation/H+ exchanger YPA_2589 IPR036291 YPA_2589 YPA_2589 IPR038770 YPA_2589 YPA_2590 IPR011611 Carbohydrate kinase PfkB YPA_2590 IPR029056 Ribokinase-like YPA_2591 IPR003856 Lipopolysaccharide biosynthesis YPA_2592 IPR005841 Alpha-D-phosphohexomutase superfamily YPA_2592 IPR005843 Alpha-D-phosphohexomutase, C-terminal YPA_2592 IPR005844 Alpha-D-phosphohexomutase, alpha/beta/alpha domain I YPA_2592 IPR005845 Alpha-D-phosphohexomutase, alpha/beta/alpha domain II YPA_2592 IPR005846 Alpha-D-phosphohexomutase, alpha/beta/alpha domain III YPA_2592 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III YPA_2592 IPR016066 Alpha-D-phosphohexomutase, conserved site YPA_2592 IPR036900 YPA_2592 YPA_2593 IPR001173 Glycosyltransferase 2-like YPA_2593 IPR029044 Nucleotide-diphospho-sugar transferases YPA_2594 IPR001538 Mannose-6-phosphate isomerase, type II, C-terminal YPA_2594 IPR005835 Nucleotidyl transferase YPA_2594 IPR006375 Mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase YPA_2594 IPR011051 RmlC-like cupin domain YPA_2594 IPR014710 RmlC-like jelly roll fold YPA_2594 IPR029044 Nucleotide-diphospho-sugar transferases YPA_2595 IPR001509 NAD-dependent epimerase/dehydratase, N-terminal domain YPA_2595 IPR028614 GDP-L-fucose synthase YPA_2595 IPR036291 YPA_2595 YPA_2596 IPR016040 NAD(P)-binding domain YPA_2596 IPR036291 YPA_2596 YPA_2597 IPR016040 NAD(P)-binding domain YPA_2597 IPR036291 YPA_2597 YPA_2598 IPR001296 Glycosyl transferase, family 1 YPA_2598 IPR028098 Glycosyltransferase subfamily 4, N-terminal domain YPA_2603 IPR036188 YPA_2603 YPA_2604 IPR001509 NAD-dependent epimerase/dehydratase, N-terminal domain YPA_2604 IPR036291 YPA_2604 YPA_2605 IPR000653 DegT/DnrJ/EryC1/StrS aminotransferase YPA_2605 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 YPA_2605 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 YPA_2605 IPR015424 Pyridoxal phosphate-dependent transferase YPA_2606 IPR013445 CDP-glucose 4,6-dehydratase YPA_2606 IPR016040 NAD(P)-binding domain YPA_2606 IPR036291 YPA_2606 YPA_2607 IPR036291 YPA_2607 YPA_2608 IPR005835 Nucleotidyl transferase YPA_2608 IPR013446 Glucose-1-phosphate cytidylyltransferase YPA_2608 IPR029044 Nucleotide-diphospho-sugar transferases YPA_2609 IPR001041 2Fe-2S ferredoxin-type domain YPA_2609 IPR001221 Phenol hydroxylase reductase YPA_2609 IPR001433 Oxidoreductase FAD/NAD(P)-binding YPA_2609 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site YPA_2609 IPR008333 Oxidoreductase, FAD-binding domain YPA_2609 IPR012675 Beta-grasp domain YPA_2609 IPR017938 Riboflavin synthase-like beta-barrel YPA_2609 IPR036010 YPA_2609 YPA_2609 IPR039261 YPA_2609 YPA_2610 IPR001015 Ferrochelatase YPA_2610 IPR019772 Ferrochelatase, active site YPA_2611 IPR000850 Adenylate kinase/UMP-CMP kinase YPA_2611 IPR006259 Adenylate kinase subfamily YPA_2611 IPR007862 Adenylate kinase, active site lid domain YPA_2611 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPA_2611 IPR033690 YPA_2611 YPA_2612 IPR001404 Heat shock protein Hsp90 family YPA_2612 IPR003594 Histidine kinase-like ATPase, C-terminal domain YPA_2612 IPR019805 Heat shock protein Hsp90, conserved site YPA_2612 IPR020568 Ribosomal protein S5 domain 2-type fold YPA_2612 IPR020575 Heat shock protein Hsp90, N-terminal YPA_2612 IPR036890 YPA_2612 YPA_2612 IPR037196 YPA_2612 YPA_2614 IPR000093 DNA recombination protein RecR YPA_2614 IPR006171 Toprim domain YPA_2614 IPR015967 Recombination protein RecR, conserved site YPA_2614 IPR023627 Recombination protein RecR YPA_2614 IPR023628 Recombination protein RecR, C4-type zinc finger YPA_2615 IPR004401 Nucleoid-associated protein YbaB YPA_2615 IPR036894 YPA_2615 YPA_2616 IPR001270 ClpA/B family YPA_2616 IPR003593 AAA+ ATPase domain YPA_2616 IPR008921 DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal YPA_2616 IPR012763 DNA polymerase III, subunit gamma/ tau YPA_2616 IPR021029 DNA polymerase III, tau subunit, domain V YPA_2616 IPR022001 DNA polymerase III subunit tau, DnaB-binding domain IV YPA_2616 IPR022754 DNA polymerase III, gamma subunit, domain III YPA_2616 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPA_2616 IPR038249 YPA_2616 YPA_2617 IPR000836 Phosphoribosyltransferase domain YPA_2617 IPR005764 Adenine phosphoribosyl transferase YPA_2617 IPR029057 Phosphoribosyltransferase-like YPA_2618 IPR007401 Protein of unknown function DUF454 YPA_2619 IPR010890 Primosomal replication PriB/PriC YPA_2619 IPR038338 YPA_2619 YPA_2620 IPR019630 Protein of unknown function DUF2496, YbaM-related YPA_2621 IPR006685 Mechanosensitive ion channel MscS YPA_2621 IPR006686 Mechanosensitive ion channel MscS, conserved site YPA_2621 IPR010920 Like-Sm (LSM) domain YPA_2621 IPR011014 Mechanosensitive ion channel MscS, transmembrane-2 YPA_2621 IPR011066 Mechanosensitive ion channel MscS, C-terminal YPA_2621 IPR023408 YPA_2621 YPA_2621 IPR025692 Mechanosensitive ion channel inner membrane domain 1 YPA_2622 IPR001584 Integrase, catalytic core YPA_2622 IPR006120 Resolvase, HTH domain YPA_2622 IPR009057 Homeodomain-like YPA_2622 IPR012337 Ribonuclease H-like domain YPA_2623 IPR001270 ClpA/B family YPA_2623 IPR002611 IstB-like ATP-binding protein YPA_2623 IPR003593 AAA+ ATPase domain YPA_2623 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPA_2623 IPR028350 DNA replication protein DnaC/insertion sequence putative ATP-binding protein YPA_2624 IPR024393 Mechanosensitive ion channel MscS, porin domain YPA_2624 IPR025692 Mechanosensitive ion channel inner membrane domain 1 YPA_2625 IPR003787 Sulphur relay, DsrE/F-like protein YPA_2625 IPR027396 DsrEFH-like YPA_2626 IPR001647 DNA-binding HTH domain, TetR-type YPA_2626 IPR009057 Homeodomain-like YPA_2626 IPR013572 Transcription regulator MAATS, C-terminal YPA_2626 IPR023772 DNA-binding HTH domain, TetR-type, conserved site YPA_2626 IPR036271 YPA_2626 YPA_2627 IPR006143 RND efflux pump, membrane fusion protein YPA_2627 IPR032317 YPA_2627 YPA_2628 IPR001036 Acriflavin resistance protein YPA_2628 IPR004764 Hydrophobe/amphiphile efflux-1 HAE1 YPA_2628 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains YPA_2629 IPR002150 Ribosomal protein L31 YPA_2629 IPR027493 Ribosomal protein L31 type B YPA_2629 IPR034704 YPA_2629 YPA_2630 IPR000473 Ribosomal protein L36 YPA_2630 IPR035977 YPA_2630 YPA_2632 IPR019693 Biofilm formation regulator YbaJ YPA_2633 IPR007985 Haemolysin expression modulating, HHA YPA_2633 IPR036666 YPA_2633 YPA_2634 IPR014048 Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding YPA_2634 IPR036217 YPA_2634 YPA_2634 IPR036388 YPA_2634 YPA_2635 IPR039366 YPA_2635 YPA_2636 IPR003703 Acyl-CoA thioesterase YPA_2636 IPR029069 HotDog domain YPA_2637 IPR001905 Ammonium transporter YPA_2637 IPR018047 Ammonium transporter, conserved site YPA_2637 IPR024041 Ammonium transporter AmtB-like domain YPA_2637 IPR029020 Ammonium/urea transporter YPA_2638 IPR002187 Nitrogen regulatory protein PII YPA_2638 IPR002332 Nitrogen regulatory protein P-II, urydylation site YPA_2638 IPR011322 Nitrogen regulatory PII-like, alpha/beta YPA_2638 IPR015867 Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal YPA_2638 IPR017918 Nitrogen regulatory protein PII, conserved site YPA_2639 IPR003439 ABC transporter-like YPA_2639 IPR003593 AAA+ ATPase domain YPA_2639 IPR011527 ABC transporter type 1, transmembrane domain YPA_2639 IPR017871 ABC transporter, conserved site YPA_2639 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPA_2639 IPR036640 YPA_2639 YPA_2640 IPR003439 ABC transporter-like YPA_2640 IPR003593 AAA+ ATPase domain YPA_2640 IPR011527 ABC transporter type 1, transmembrane domain YPA_2640 IPR017871 ABC transporter, conserved site YPA_2640 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPA_2640 IPR036640 YPA_2640 YPA_2641 IPR000485 AsnC-type HTH domain YPA_2641 IPR011008 Dimeric alpha-beta barrel YPA_2641 IPR019887 Transcription regulator AsnC-type, C-terminal YPA_2641 IPR019888 Transcription regulator AsnC-type YPA_2641 IPR036388 YPA_2641 YPA_2641 IPR036390 YPA_2641 YPA_2642 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme YPA_2642 IPR036052 YPA_2642 YPA_2643 IPR000150 Cof protein YPA_2643 IPR006379 HAD-superfamily hydrolase, subfamily IIB YPA_2643 IPR023214 HAD-like domain YPA_2643 IPR023938 HMP-PP phosphatase YPA_2643 IPR036412 YPA_2643 YPA_2644 IPR000914 Bacterial extracellular solute-binding protein, family 5 YPA_2644 IPR025370 Transcriptional regulator SgrR, N-terminal HTH domain YPA_2645 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold YPA_2645 IPR018317 Queuosine biosynthesis protein QueC YPA_2646 IPR006684 Acyl-CoA thioester hydrolase YbgC/YbaW family YPA_2646 IPR029069 HotDog domain YPA_2647 IPR004509 Competence protein ComEA, helix-hairpin-helix domain YPA_2647 IPR010994 RuvA domain 2-like YPA_2648 IPR000297 Peptidyl-prolyl cis-trans isomerase, PpiC-type YPA_2648 IPR027304 Trigger factor/SurA domain YPA_2649 IPR000119 Histone-like bacterial DNA-binding protein YPA_2649 IPR010992 Integration host factor (IHF)-like DNA-binding domain YPA_2649 IPR020816 Histone-like DNA-binding protein, conserved site YPA_2650 IPR003111 Peptidase S16, lon N-terminal YPA_2650 IPR003593 AAA+ ATPase domain YPA_2650 IPR003959 ATPase, AAA-type, core YPA_2650 IPR004815 Lon protease, bacterial/eukaryotic-type YPA_2650 IPR008268 Peptidase S16, active site YPA_2650 IPR008269 Peptidase S16, Lon C-terminal YPA_2650 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup YPA_2650 IPR015947 PUA-like domain YPA_2650 IPR020568 Ribosomal protein S5 domain 2-type fold YPA_2650 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPA_2650 IPR027543 Lon protease, bacterial YPA_2651 IPR003593 AAA+ ATPase domain YPA_2651 IPR003959 ATPase, AAA-type, core YPA_2651 IPR004487 Clp protease, ATP-binding subunit ClpX YPA_2651 IPR010603 Zinc finger, ClpX C4-type YPA_2651 IPR019489 Clp ATPase, C-terminal YPA_2651 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPA_2651 IPR038366 YPA_2651 YPA_2652 IPR001907 ATP-dependent Clp protease proteolytic subunit YPA_2652 IPR018215 ClpP, active site YPA_2652 IPR023562 Clp protease proteolytic subunit /Translocation-enhancing protein TepA YPA_2652 IPR029045 ClpP/crotonase-like domain YPA_2652 IPR033135 YPA_2652 YPA_2653 IPR001179 Peptidyl-prolyl cis-trans isomerase, FKBP-type, domain YPA_2653 IPR005215 Trigger factor YPA_2653 IPR008880 Trigger factor, C-terminal domain YPA_2653 IPR008881 Trigger factor, ribosome-binding, bacterial YPA_2653 IPR027304 Trigger factor/SurA domain YPA_2653 IPR036611 YPA_2653 YPA_2653 IPR037041 YPA_2653 YPA_2654 IPR002634 BolA protein YPA_2654 IPR036065 YPA_2654 YPA_2655 IPR005619 Uncharacterised protein family, YajG YPA_2655 IPR012640 Membrane lipoprotein, lipid attachment site YPA_2656 IPR011701 Major facilitator superfamily YPA_2656 IPR036259 YPA_2656 YPA_2657 IPR018013 Nucleoside-specific channel-forming protein, Tsx-like YPA_2657 IPR036777 YPA_2657 YPA_2658 IPR002429 Cytochrome c oxidase subunit II C-terminal YPA_2658 IPR006333 Cytochrome o ubiquinol oxidase subunit II YPA_2658 IPR008972 Cupredoxin YPA_2658 IPR010514 COX aromatic rich motif YPA_2658 IPR036257 YPA_2658 YPA_2659 IPR000883 Cytochrome c oxidase subunit I YPA_2659 IPR014207 Cytochrome o ubiquinol oxidase, subunit I YPA_2659 IPR023615 Cytochrome c oxidase, subunit I, copper-binding site YPA_2659 IPR036927 YPA_2659 YPA_2660 IPR000298 Cytochrome c oxidase subunit III domain YPA_2660 IPR013833 Cytochrome c oxidase, subunit III, 4-helical bundle YPA_2660 IPR014206 Cytochrome o ubiquinol oxidase, subunit III YPA_2660 IPR035973 YPA_2660 YPA_2661 IPR005171 Cytochrome C oxidase subunit IV, prokaryotes YPA_2661 IPR014210 Cytochrome o ubiquinol oxidase subunit IV YPA_2662 IPR000537 UbiA prenyltransferase family YPA_2662 IPR006369 Protohaem IX farnesyltransferase YPA_2662 IPR030470 YPA_2662 YPA_2663 IPR011701 Major facilitator superfamily YPA_2663 IPR036259 YPA_2663 YPA_2664 IPR007551 Protein of unknown function DUF520 YPA_2664 IPR035570 YPA_2664 YPA_2664 IPR035571 YPA_2664 YPA_2664 IPR036183 YPA_2664 YPA_2665 IPR003710 Ketopantoate reductase ApbA/PanE YPA_2665 IPR008927 6-phosphogluconate dehydrogenase, C-terminal-like YPA_2665 IPR013328 Dehydrogenase, multihelical YPA_2665 IPR013332 Ketopantoate reductase, N-terminal domain YPA_2665 IPR013752 Ketopantoate reductase, C-terminal domain YPA_2665 IPR036291 YPA_2665 YPA_2666 IPR002818 ThiJ/PfpI YPA_2666 IPR006287 DJ-1 YPA_2666 IPR029062 Class I glutamine amidotransferase-like YPA_2667 IPR003720 tRNA sulfurtransferase ThiI YPA_2667 IPR004114 THUMP YPA_2667 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold YPA_2667 IPR020536 Thil, AANH domain YPA_2667 IPR026340 Thiazole biosynthesis domain YPA_2667 IPR036873 YPA_2667 YPA_2669 IPR003761 Exonuclease VII, small subunit YPA_2669 IPR037004 YPA_2669 YPA_2670 IPR000092 Polyprenyl synthetase YPA_2670 IPR008949 Terpenoid synthase YPA_2670 IPR033749 YPA_2670 YPA_2671 IPR005474 Transketolase, N-terminal YPA_2671 IPR005475 Transketolase-like, pyrimidine-binding domain YPA_2671 IPR005477 Deoxyxylulose-5-phosphate synthase YPA_2671 IPR009014 Transketolase, C-terminal/Pyruvate-ferredoxin oxidoreductase, domain II YPA_2671 IPR020826 Transketolase binding site YPA_2671 IPR029061 Thiamin diphosphate-binding fold YPA_2671 IPR033248 YPA_2671 YPA_2672 IPR002686 Transposase IS200-like YPA_2672 IPR036515 YPA_2672 YPA_2673 IPR007686 YutG/PgpA domain YPA_2673 IPR026037 Phosphatidylglycerophosphatase A YPA_2673 IPR036681 YPA_2673 YPA_2674 IPR006283 Thiamine-monophosphate kinase YPA_2674 IPR010918 AIR synthase-related protein, C-terminal domain YPA_2674 IPR016188 PurM, N-terminal-like YPA_2674 IPR036676 YPA_2674 YPA_2674 IPR036921 YPA_2674 YPA_2675 IPR006027 NusB/RsmB/TIM44 YPA_2675 IPR011605 NusB antitermination factor YPA_2675 IPR035926 YPA_2675 YPA_2676 IPR002180 6,7-dimethyl-8-ribityllumazine synthase YPA_2676 IPR034964 YPA_2676 YPA_2676 IPR036467 YPA_2676 YPA_2677 IPR002125 CMP/dCMP deaminase, zinc-binding YPA_2677 IPR002734 Bacterial bifunctional deaminase-reductase, C-terminal YPA_2677 IPR004794 Riboflavin biosynthesis protein RibD YPA_2677 IPR011549 Riboflavin-specific deaminase, C-terminal YPA_2677 IPR016192 APOBEC/CMP deaminase, zinc-binding YPA_2677 IPR016193 Cytidine deaminase-like YPA_2677 IPR024072 Dihydrofolate reductase-like domain YPA_2678 IPR003796 Ribonucleotide reductase regulator NrdR-like YPA_2678 IPR005144 ATP-cone YPA_2681 IPR002686 Transposase IS200-like YPA_2681 IPR036515 YPA_2681 YPA_2682 IPR002686 Transposase IS200-like YPA_2682 IPR036515 YPA_2682 YPA_2683 IPR005665 Protein-export membrane protein SecF, bacterial YPA_2683 IPR022645 Protein-export membrane protein SecD/SecF, bacterial YPA_2683 IPR022646 Protein-export membrane protein SecD/SecF/SecDF, conserved site YPA_2683 IPR022813 Protein-export membrane protein SecD/SecF, archaeal and bacterial YPA_2684 IPR005791 Protein translocase subunit SecD YPA_2684 IPR022645 Protein-export membrane protein SecD/SecF, bacterial YPA_2684 IPR022646 Protein-export membrane protein SecD/SecF/SecDF, conserved site YPA_2684 IPR022813 Protein-export membrane protein SecD/SecF, archaeal and bacterial YPA_2684 IPR027398 SecD export protein N-terminal TM domain YPA_2685 IPR003849 Preprotein translocase YajC YPA_2686 IPR002616 tRNA-guanine(15) transglycosylase-like YPA_2686 IPR004803 Queuine tRNA-ribosyltransferase YPA_2686 IPR036511 YPA_2686 YPA_2687 IPR003699 S-adenosylmethionine:tRNA ribosyltransferase-isomerase, QueA YPA_2687 IPR036100 YPA_2687 YPA_2688 IPR007431 Acyl carrier protein phosphodiesterase YPA_2688 IPR023491 Acyl carrier protein phosphodiesterase, gammaproteobacteria YPA_2689 IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant YPA_2689 IPR019479 Peroxiredoxin, C-terminal YPA_2689 IPR024706 Peroxiredoxin, AhpC-type YPA_2689 IPR036249 YPA_2689 YPA_2690 IPR029055 Nucleophile aminohydrolases, N-terminal YPA_2691 IPR000101 Gamma-glutamyltranspeptidase YPA_2691 IPR029055 Nucleophile aminohydrolases, N-terminal YPA_2692 IPR002347 Glucose/ribitol dehydrogenase YPA_2692 IPR036291 YPA_2692 YPA_2693 IPR004185 Glycoside hydrolase, family 13, N-terminal Ig-like domain YPA_2693 IPR006047 Glycosyl hydrolase, family 13, catalytic domain YPA_2693 IPR013780 Glycosyl hydrolase, family 13, all-beta YPA_2693 IPR014756 Immunoglobulin E-set YPA_2693 IPR017069 Maltodextrin glucosidase YPA_2693 IPR017853 Glycoside hydrolase, superfamily YPA_2694 IPR002293 Amino acid/polyamine transporter I YPA_2694 IPR004840 Amino acid permease, conserved site YPA_2694 IPR004841 Amino acid permease/ SLC12A domain YPA_2695 IPR004685 Branched-chain amino acid transport system II carrier protein YPA_2696 IPR011862 Phosphate binding protein YPA_2696 IPR024370 PBP domain YPA_2697 IPR000014 PAS domain YPA_2697 IPR003594 Histidine kinase-like ATPase, C-terminal domain YPA_2697 IPR003661 Signal transduction histidine kinase EnvZ-like, dimerisation/phosphoacceptor domain YPA_2697 IPR004358 Signal transduction histidine kinase-related protein, C-terminal YPA_2697 IPR013767 PAS fold YPA_2697 IPR014310 Signal transduction histidine kinase, phosphate regulon sensor PhoR YPA_2697 IPR021766 Protein of unknown function DUF3329 YPA_2697 IPR035965 YPA_2697 YPA_2697 IPR036097 YPA_2697 YPA_2697 IPR036890 YPA_2697 YPA_2698 IPR001789 Signal transduction response regulator, receiver domain YPA_2698 IPR001867 Signal transduction response regulator, C-terminal YPA_2698 IPR011006 CheY-like superfamily YPA_2698 IPR011879 Signal transduction response regulator, phosphate regulon transcriptional regulatory protein PhoB YPA_2698 IPR016032 Signal transduction response regulator, C-terminal effector YPA_2698 IPR036388 YPA_2698 YPA_2699 IPR004593 Nuclease SbcCD subunit D YPA_2699 IPR004843 Calcineurin-like phosphoesterase domain, apaH type YPA_2699 IPR026843 Nuclease SbcCD subunit D, C-terminal domain YPA_2699 IPR029052 Metallo-dependent phosphatase-like YPA_2700 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPA_2700 IPR038729 YPA_2700 YPA_2701 IPR001584 Integrase, catalytic core YPA_2701 IPR006120 Resolvase, HTH domain YPA_2701 IPR009057 Homeodomain-like YPA_2701 IPR012337 Ribonuclease H-like domain YPA_2702 IPR001270 ClpA/B family YPA_2702 IPR002611 IstB-like ATP-binding protein YPA_2702 IPR003593 AAA+ ATPase domain YPA_2702 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPA_2702 IPR028350 DNA replication protein DnaC/insertion sequence putative ATP-binding protein YPA_2703 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPA_2704 IPR000600 ROK YPA_2705 IPR007476 Putative exonuclease, RdgC YPA_2706 IPR009664 Protein of unknown function DUF1255 YPA_2706 IPR011051 RmlC-like cupin domain YPA_2706 IPR014710 RmlC-like jelly roll fold YPA_2707 IPR000623 Shikimate kinase/Threonine synthase-like 1 YPA_2707 IPR023000 Shikimate kinase, conserved site YPA_2707 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPA_2707 IPR027544 Shikimate kinase 2 YPA_2707 IPR031322 YPA_2707 YPA_2708 IPR001737 Ribosomal RNA adenine methylase transferase YPA_2708 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase-like YPA_2709 IPR013216 Methyltransferase type 11 YPA_2709 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase-like YPA_2712 IPR009875 PilZ domain YPA_2712 IPR009926 Type III secretion system flagellar brake protein YcgR, N-terminal YPA_2712 IPR012349 FMN-binding split barrel YPA_2712 IPR023787 Type III secretion system flagellar brake protein YcgR YPA_2713 IPR000965 Gamma-glutamyl phosphate reductase GPR YPA_2713 IPR012134 Glutamate-5-semialdehyde dehydrogenase YPA_2713 IPR015590 Aldehyde dehydrogenase domain YPA_2713 IPR016161 Aldehyde/histidinol dehydrogenase YPA_2713 IPR016162 Aldehyde dehydrogenase, N-terminal YPA_2713 IPR016163 Aldehyde dehydrogenase, C-terminal YPA_2713 IPR020593 Gamma-glutamyl phosphate reductase GPR, conserved site YPA_2714 IPR001048 Aspartate/glutamate/uridylate kinase YPA_2714 IPR001057 Glutamate/acetylglutamate kinase YPA_2714 IPR002478 PUA domain YPA_2714 IPR005715 Glutamate 5-kinase/delta-1-pyrroline-5-carboxylate synthase YPA_2714 IPR011529 Glutamate 5-kinase YPA_2714 IPR015947 PUA-like domain YPA_2714 IPR019797 Glutamate 5-kinase, conserved site YPA_2714 IPR036393 YPA_2714 YPA_2714 IPR036974 YPA_2714 YPA_2715 IPR009986 Sigma factor-binding protein Crl YPA_2715 IPR038208 YPA_2715 YPA_2716 IPR010520 Protein of unknown function DUF1100, hydrolase-like YPA_2716 IPR029058 Alpha/Beta hydrolase fold YPA_2717 IPR000836 Phosphoribosyltransferase domain YPA_2717 IPR023747 Xanthine-guanine phosphoribosyltransferase YPA_2717 IPR029057 Phosphoribosyltransferase-like YPA_2718 IPR004302 Chitin-binding, domain 3 YPA_2718 IPR013783 Immunoglobulin-like fold YPA_2718 IPR014756 Immunoglobulin E-set YPA_2718 IPR022409 PKD/Chitinase domain YPA_2718 IPR035986 YPA_2718 YPA_2719 IPR000847 Transcription regulator HTH, LysR YPA_2719 IPR036388 YPA_2719 YPA_2719 IPR036390 YPA_2719 YPA_2720 IPR001160 Peptidase M20C, Xaa-His dipeptidase YPA_2720 IPR002933 Peptidase M20 YPA_2720 IPR011650 Peptidase M20, dimerisation domain YPA_2721 IPR001126 DNA-repair protein, UmuC-like YPA_2721 IPR017961 DNA polymerase, Y-family, little finger domain YPA_2721 IPR022880 DNA polymerase IV YPA_2721 IPR024728 DNA polymerase type-Y, HhH motif YPA_2721 IPR036775 YPA_2721 YPA_2722 IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain YPA_2722 IPR030395 YPA_2722 YPA_2723 IPR007495 Protein of unknown function DUF539 YPA_2724 IPR003374 ApbE-like domain YPA_2724 IPR024932 Flavin transferase ApbE YPA_2725 IPR001041 2Fe-2S ferredoxin-type domain YPA_2725 IPR001433 Oxidoreductase FAD/NAD(P)-binding YPA_2725 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase YPA_2725 IPR008333 Oxidoreductase, FAD-binding domain YPA_2725 IPR010205 NADH-quinone reductase, Na(+)-translocating, F subunit YPA_2725 IPR012675 Beta-grasp domain YPA_2725 IPR017938 Riboflavin synthase-like beta-barrel YPA_2725 IPR036010 YPA_2725 YPA_2725 IPR039261 YPA_2725 YPA_2726 IPR003667 Electron transport complex, Rnf/Nqr YPA_2726 IPR010967 NADH:ubiquinone oxidoreductase, Na(+)-translocating, E subunit YPA_2727 IPR003667 Electron transport complex, Rnf/Nqr YPA_2727 IPR011292 NADH:ubiquinone oxidoreductase, Na(+)-translocating, D subunit YPA_2728 IPR007329 FMN-binding YPA_2728 IPR010204 NADH:ubiquinone oxidoreductase, Na(+)-translocating, C subunit YPA_2729 IPR004338 NADH-quinone reductase NQR2/RnfD YPA_2729 IPR010966 NADH:ubiquinone oxidoreductase, Na(+)-translocating, B subunit YPA_2730 IPR008703 NADH-quinone reductase, Na(+)-translocating, subunit A YPA_2730 IPR022615 NADH-quinone reductase, Na(+)-translocating, subunit A, C-terminal YPA_2732 IPR005490 L,D-transpeptidase catalytic domain YPA_2732 IPR038063 YPA_2732 YPA_2733 IPR026869 Putative glutamine amidotransferase type 2 YPA_2733 IPR029055 Nucleophile aminohydrolases, N-terminal YPA_2734 IPR001347 Sugar isomerase (SIS) YPA_2734 IPR004515 Phosphoheptose isomerase YPA_2735 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal YPA_2735 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain YPA_2735 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal YPA_2735 IPR015396 Acyl-CoA dehydrogenase, C-termina, bacterial type YPA_2735 IPR036250 YPA_2735 YPA_2735 IPR037069 YPA_2735 YPA_2736 IPR004356 Adhesin operon regulatory protein YPA_2738 IPR006626 Parallel beta-helix repeat YPA_2738 IPR008638 Filamentous haemagglutinin, N-terminal YPA_2738 IPR011050 Pectin lyase fold/virulence factor YPA_2738 IPR012334 Pectin lyase fold YPA_2738 IPR024973 ESPR domain YPA_2739 IPR005565 Haemolysin activator HlyB YPA_2739 IPR013686 Polypeptide-transport-associated, ShlB-type YPA_2740 IPR001261 ArgE/DapE/ACY1/CPG2/YscS, conserved site YPA_2740 IPR002933 Peptidase M20 YPA_2740 IPR010158 Amidase, hydantoinase/carbamoylase YPA_2740 IPR036264 YPA_2740 YPA_2741 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 YPA_2741 IPR015424 Pyridoxal phosphate-dependent transferase YPA_2742 IPR001584 Integrase, catalytic core YPA_2742 IPR006120 Resolvase, HTH domain YPA_2742 IPR009057 Homeodomain-like YPA_2742 IPR012337 Ribonuclease H-like domain YPA_2743 IPR001270 ClpA/B family YPA_2743 IPR002611 IstB-like ATP-binding protein YPA_2743 IPR003593 AAA+ ATPase domain YPA_2743 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPA_2743 IPR028350 DNA replication protein DnaC/insertion sequence putative ATP-binding protein YPA_2744 IPR000192 Aminotransferase class V domain YPA_2744 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 YPA_2744 IPR015424 Pyridoxal phosphate-dependent transferase YPA_2745 IPR003439 ABC transporter-like YPA_2745 IPR003593 AAA+ ATPase domain YPA_2745 IPR017871 ABC transporter, conserved site YPA_2745 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPA_2745 IPR030679 YPA_2745 YPA_2746 IPR000515 MetI-like domain YPA_2746 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain, His/Glu/Gln/Arg/opine family YPA_2746 IPR035906 YPA_2746 YPA_2747 IPR000515 MetI-like domain YPA_2747 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain, His/Glu/Gln/Arg/opine family YPA_2747 IPR035906 YPA_2747 YPA_2748 IPR001638 Extracellular solute-binding protein, family 3 YPA_2748 IPR018313 Extracellular solute-binding protein, family 3, conserved site YPA_2749 IPR000281 Helix-turn-helix protein RpiR YPA_2749 IPR001347 Sugar isomerase (SIS) YPA_2749 IPR009057 Homeodomain-like YPA_2749 IPR036388 YPA_2749 YPA_2751 IPR025148 Protein of unknown function DUF4089 YPA_2752 IPR014087 Amidohydrolase, AtzE type YPA_2752 IPR023631 Amidase signature domain YPA_2752 IPR036928 YPA_2752 YPA_2753 IPR024507 Protein of unknown function DUF3225 YPA_2753 IPR032710 YPA_2753 YPA_2754 IPR011701 Major facilitator superfamily YPA_2754 IPR036259 YPA_2754 YPA_2755 IPR011606 Branched-chain amino acid transport, permease YPA_2756 IPR008407 Branched-chain amino acid transport, AzlD YPA_2757 IPR000835 MarR-type HTH domain YPA_2757 IPR023187 Transcriptional regulator MarR-type, conserved site YPA_2757 IPR036388 YPA_2757 YPA_2757 IPR036390 YPA_2757 YPA_2758 IPR005694 Efflux pump membrane protein Emr YPA_2758 IPR006143 RND efflux pump, membrane fusion protein YPA_2758 IPR032317 YPA_2758 YPA_2759 IPR004638 Drug resistance transporter EmrB/QacA subfamily YPA_2759 IPR011701 Major facilitator superfamily YPA_2759 IPR036259 YPA_2759 YPA_2760 IPR001537 tRNA/rRNA methyltransferase, SpoU type YPA_2760 IPR013123 RNA 2-O ribose methyltransferase, substrate binding YPA_2760 IPR016479 tRNA/rRNA methyltransferase, YfiF, predicted YPA_2760 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal YPA_2760 IPR029028 Alpha/beta knot methyltransferases YPA_2760 IPR029064 50S ribosomal protein L30e-like YPA_2761 IPR005746 Thioredoxin YPA_2761 IPR013766 Thioredoxin domain YPA_2761 IPR017937 Thioredoxin, conserved site YPA_2761 IPR036249 YPA_2761 YPA_2762 IPR005636 DTW YPA_2763 IPR000182 GNAT domain YPA_2763 IPR003781 CoA-binding YPA_2763 IPR013815 ATP-grasp fold, subdomain 1 YPA_2763 IPR016102 Succinyl-CoA synthetase-like YPA_2763 IPR016181 Acyl-CoA N-acyltransferase YPA_2763 IPR032875 YPA_2763 YPA_2763 IPR036291 YPA_2763 YPA_2764 IPR001736 Phospholipase D/Transphosphatidylase YPA_2764 IPR025202 Phospholipase D-like domain YPA_2765 IPR017028 Uncharacterised conserved protein UCP034456 YPA_2765 IPR018736 Protein of unknown function DUF2279, periplasmic lipoprotein YPA_2766 IPR001270 ClpA/B family YPA_2766 IPR003593 AAA+ ATPase domain YPA_2766 IPR003959 ATPase, AAA-type, core YPA_2766 IPR004176 Clp, N-terminal YPA_2766 IPR017730 Chaperonin ClpB YPA_2766 IPR018368 ClpA/B, conserved site 1 YPA_2766 IPR019489 Clp ATPase, C-terminal YPA_2766 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPA_2766 IPR028299 ClpA/B, conserved site 2 YPA_2766 IPR036628 YPA_2766 YPA_2767 IPR003730 Multi-copper polyphenol oxidoreductase, laccase YPA_2767 IPR011324 Cytotoxic necrotizing factor-like, catalytic YPA_2767 IPR038371 YPA_2767 YPA_2768 IPR002942 RNA-binding S4 domain YPA_2768 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F YPA_2768 IPR006224 Pseudouridine synthase, RluC/RluD, conserved site YPA_2768 IPR006225 Pseudouridine synthase, RluC/RluD YPA_2768 IPR020103 Pseudouridine synthase, catalytic domain YPA_2768 IPR036986 YPA_2768 YPA_2769 IPR011990 Tetratricopeptide-like helical domain YPA_2769 IPR017689 Outer membrane protein assembly factor BamD YPA_2769 IPR039565 YPA_2769 YPA_2770 IPR003489 Ribosomal protein S30Ae/sigma 54 modulation protein YPA_2770 IPR036567 YPA_2770 YPA_2771 IPR002686 Transposase IS200-like YPA_2771 IPR036515 YPA_2771 YPA_2772 IPR002686 Transposase IS200-like YPA_2772 IPR036515 YPA_2772 YPA_2773 IPR001086 Prephenate dehydratase YPA_2773 IPR002701 Chorismate mutase YPA_2773 IPR010952 Chorismate mutase, gammaproteobacteria YPA_2773 IPR036263 YPA_2773 YPA_2773 IPR036979 YPA_2773 YPA_2774 IPR001584 Integrase, catalytic core YPA_2774 IPR006120 Resolvase, HTH domain YPA_2774 IPR009057 Homeodomain-like YPA_2774 IPR012337 Ribonuclease H-like domain YPA_2775 IPR001270 ClpA/B family YPA_2775 IPR002611 IstB-like ATP-binding protein YPA_2775 IPR003593 AAA+ ATPase domain YPA_2775 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPA_2775 IPR028350 DNA replication protein DnaC/insertion sequence putative ATP-binding protein YPA_2776 IPR000878 Tetrapyrrole methylase YPA_2776 IPR003043 Uroporphiryn-III C-methyltransferase, conserved site YPA_2776 IPR006366 Uroporphyrin-III C-methyltransferase YPA_2776 IPR014776 Tetrapyrrole methylase, subdomain 2 YPA_2776 IPR014777 Tetrapyrrole methylase, subdomain 1 YPA_2776 IPR035996 YPA_2776 YPA_2777 IPR002500 Phosphoadenosine phosphosulphate reductase YPA_2777 IPR011784 Sulphate adenylyltransferase, small subunit YPA_2777 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold YPA_2778 IPR000795 Elongation factor, GTP-binding domain YPA_2778 IPR005225 Small GTP-binding protein domain YPA_2778 IPR009000 Translation protein, beta-barrel domain YPA_2778 IPR009001 Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal YPA_2778 IPR011779 Sulphate adenylyltransferase, large subunit YPA_2778 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPA_2778 IPR031157 YPA_2778 YPA_2779 IPR002891 Adenylylsulphate kinase YPA_2779 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPA_2780 IPR022721 Protein of unknown function DUF3561 YPA_2781 IPR007060 Septum formation initiator FtsL/DivIC YPA_2781 IPR023081 Cell division protein FtsB YPA_2782 IPR001228 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase YPA_2782 IPR018294 4-diphosphocytidyl-2C-methyl-D-erythritol synthase, conserved site YPA_2782 IPR029044 Nucleotide-diphospho-sugar transferases YPA_2782 IPR034683 YPA_2782 YPA_2783 IPR003526 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase YPA_2783 IPR020555 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, conserved site YPA_2783 IPR036571 YPA_2783 YPA_2784 IPR001656 Pseudouridine synthase, TruD YPA_2784 IPR020103 Pseudouridine synthase, catalytic domain YPA_2784 IPR020119 Pseudouridine synthase TruD, conserved site YPA_2785 IPR002828 Survival protein SurE-like phosphatase/nucleotidase YPA_2785 IPR030048 YPA_2785 YPA_2785 IPR036523 YPA_2785 YPA_2786 IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase YPA_2786 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase-like YPA_2787 IPR011055 Duplicated hybrid motif YPA_2787 IPR016047 Peptidase M23 YPA_2787 IPR018392 LysM domain YPA_2787 IPR036779 YPA_2787 YPA_2788 IPR000943 RNA polymerase sigma-70 YPA_2788 IPR007624 RNA polymerase sigma-70 region 3 YPA_2788 IPR007627 RNA polymerase sigma-70 region 2 YPA_2788 IPR007630 RNA polymerase sigma-70 region 4 YPA_2788 IPR009042 RNA polymerase sigma-70 region 1.2 YPA_2788 IPR012761 RNA polymerase sigma factor RpoS YPA_2788 IPR013324 RNA polymerase sigma factor, region 3/4 YPA_2788 IPR013325 RNA polymerase sigma factor, region 2 YPA_2788 IPR014284 RNA polymerase sigma-70 like domain YPA_2788 IPR036388 YPA_2788 YPA_2789 IPR000432 DNA mismatch repair protein MutS, C-terminal YPA_2789 IPR005748 DNA mismatch repair protein MutS, type 1 YPA_2789 IPR007695 DNA mismatch repair protein MutS-like, N-terminal YPA_2789 IPR007696 DNA mismatch repair protein MutS, core YPA_2789 IPR007860 DNA mismatch repair protein MutS, connector domain YPA_2789 IPR007861 DNA mismatch repair protein MutS, clamp YPA_2789 IPR016151 DNA mismatch repair protein MutS, N-terminal YPA_2789 IPR017261 DNA mismatch repair protein Msh6 YPA_2789 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPA_2789 IPR036187 YPA_2789 YPA_2789 IPR036678 YPA_2789 YPA_2791 IPR003500 Sugar-phosphate isomerase, RpiB/LacA/LacB family YPA_2791 IPR004785 Ribose 5-phosphate isomerase B YPA_2791 IPR036569 YPA_2791 YPA_2792 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site YPA_2792 IPR011032 GroES (chaperonin 10)-like YPA_2792 IPR013149 Alcohol dehydrogenase, C-terminal YPA_2792 IPR013154 Alcohol dehydrogenase GroES-like YPA_2792 IPR020843 Polyketide synthase, enoylreductase YPA_2792 IPR036291 YPA_2792 YPA_2793 IPR002347 Glucose/ribitol dehydrogenase YPA_2793 IPR020904 Short-chain dehydrogenase/reductase, conserved site YPA_2793 IPR036291 YPA_2793 YPA_2794 IPR004006 Dak kinase YPA_2795 IPR004007 DhaL domain YPA_2795 IPR012737 Dihydroxyacetone kinase, subunit L YPA_2795 IPR036117 YPA_2795 YPA_2796 IPR007324 Sugar-binding domain, putative YPA_2796 IPR037171 YPA_2796 YPA_2797 IPR000802 Arsenical pump membrane protein, ArsB YPA_2798 IPR001845 HTH ArsR-type DNA-binding domain YPA_2798 IPR036388 YPA_2798 YPA_2798 IPR036390 YPA_2798 YPA_2800 IPR001638 Extracellular solute-binding protein, family 3 YPA_2801 IPR004852 Di-haem cytochrome c peroxidase YPA_2801 IPR009056 Cytochrome c-like domain YPA_2801 IPR025992 Haem-binding domain YPA_2801 IPR036909 YPA_2801 YPA_2803 IPR000531 TonB-dependent receptor, beta-barrel YPA_2803 IPR012910 TonB-dependent receptor, plug YPA_2803 IPR036942 YPA_2803 YPA_2803 IPR037066 YPA_2803 YPA_2804 IPR000531 TonB-dependent receptor, beta-barrel YPA_2804 IPR036942 YPA_2804 YPA_2805 IPR012927 ShET2 enterotoxin, N-terminal YPA_2807 IPR000994 Peptidase M24, structural domain YPA_2807 IPR001714 Peptidase M24, methionine aminopeptidase YPA_2807 IPR002467 Peptidase M24A, methionine aminopeptidase, subfamily 1 YPA_2807 IPR036005 YPA_2807 YPA_2808 IPR021831 Protein of unknown function DUF3423 YPA_2809 IPR004646 Fe-S hydro-lyase, tartrate dehydratase alpha-type, catalytic domain YPA_2809 IPR004647 Fe-S hydro-lyase, tartrate dehydratase beta-type, catalytic domain YPA_2809 IPR011167 Iron-dependent fumarate hydratase YPA_2809 IPR020557 Fumarate lyase, conserved site YPA_2809 IPR036660 YPA_2809 YPA_2810 IPR000577 YPA_2810 YPA_2810 IPR018484 Carbohydrate kinase, FGGY, N-terminal YPA_2810 IPR018485 Carbohydrate kinase, FGGY, C-terminal YPA_2811 IPR004560 L-ribulose-5-phosphate 3-epimerase YPA_2811 IPR013022 Xylose isomerase-like, TIM barrel domain YPA_2811 IPR036237 YPA_2811 YPA_2812 IPR001851 ABC transporter, permease YPA_2813 IPR001851 ABC transporter, permease YPA_2814 IPR003439 ABC transporter-like YPA_2814 IPR003593 AAA+ ATPase domain YPA_2814 IPR017871 ABC transporter, conserved site YPA_2814 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPA_2815 IPR002686 Transposase IS200-like YPA_2815 IPR036515 YPA_2815 YPA_2816 IPR025997 Periplasmic binding protein domain YPA_2816 IPR028082 Periplasmic binding protein-like I YPA_2817 IPR001034 HTH DeoR N-terminal domain YPA_2817 IPR014036 DeoR C-terminal sensor domain YPA_2817 IPR018356 Transcription regulator, HTH DeoR-type, conserved site YPA_2817 IPR036390 YPA_2817 YPA_2817 IPR037171 YPA_2817 YPA_2818 IPR001303 Class II aldolase/adducin N-terminal YPA_2818 IPR004661 L-ribulose-5-phosphate 4-epimerase YPA_2818 IPR036409 YPA_2818 YPA_2819 IPR006655 Molybdopterin oxidoreductase, prokaryotic, conserved site YPA_2819 IPR006656 Molybdopterin oxidoreductase YPA_2819 IPR006657 Molydopterin dinucleotide-binding domain YPA_2819 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain YPA_2819 IPR009010 Aspartate decarboxylase-like domain YPA_2819 IPR011888 Anaerobic dimethyl sulphoxide reductase, subunit A, DmsA/YnfE YPA_2819 IPR027467 Molybdopterin oxidoreductase, molybdopterin cofactor binding site YPA_2820 IPR014297 Dimethylsulphoxide reductase, chain B YPA_2820 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain YPA_2820 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site YPA_2821 IPR007059 DMSO reductase anchor subunit (DmsC) YPA_2822 IPR020945 DMSO/Nitrate reductase chaperone YPA_2822 IPR026269 Tat proofreading chaperone DmsD-type YPA_2822 IPR028611 Tat proofreading chaperone DmsD YPA_2822 IPR036411 YPA_2822 YPA_2823 IPR011577 Cytochrome b561, bacterial/Ni-hydrogenase YPA_2823 IPR016174 Di-haem cytochrome, transmembrane YPA_2824 IPR009155 Cytochrome b562 YPA_2824 IPR010980 Cytochrome c/b562 YPA_2825 IPR000763 Catalase-peroxidase haem YPA_2825 IPR002016 Haem peroxidase, plant/fungal/bacterial YPA_2825 IPR010255 Haem peroxidase YPA_2825 IPR019793 Peroxidases heam-ligand binding site YPA_2825 IPR019794 Peroxidase, active site YPA_2826 IPR025997 Periplasmic binding protein domain YPA_2826 IPR028082 Periplasmic binding protein-like I YPA_2827 IPR014582 Uncharacterised conserved protein UCP033535, periplasmic lipoprotein YPA_2827 IPR036215 YPA_2827 YPA_2828 IPR003439 ABC transporter-like YPA_2828 IPR003593 AAA+ ATPase domain YPA_2828 IPR017871 ABC transporter, conserved site YPA_2828 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPA_2829 IPR001851 ABC transporter, permease YPA_2830 IPR005474 Transketolase, N-terminal YPA_2830 IPR029061 Thiamin diphosphate-binding fold YPA_2831 IPR005475 Transketolase-like, pyrimidine-binding domain YPA_2831 IPR009014 Transketolase, C-terminal/Pyruvate-ferredoxin oxidoreductase, domain II YPA_2831 IPR029061 Thiamin diphosphate-binding fold YPA_2831 IPR033248 YPA_2831 YPA_2832 IPR000577 YPA_2832 YPA_2832 IPR018484 Carbohydrate kinase, FGGY, N-terminal YPA_2832 IPR018485 Carbohydrate kinase, FGGY, C-terminal YPA_2833 IPR009015 L-fucose isomerase, N-terminal/central domain YPA_2833 IPR015888 L-fucose isomerase, C-terminal YPA_2835 IPR000835 MarR-type HTH domain YPA_2835 IPR007324 Sugar-binding domain, putative YPA_2835 IPR036390 YPA_2835 YPA_2835 IPR037171 YPA_2835 YPA_2836 IPR011701 Major facilitator superfamily YPA_2836 IPR036259 YPA_2836 YPA_2837 IPR008136 CinA, C-terminal YPA_2837 IPR036653 YPA_2837 YPA_2838 IPR003593 AAA+ ATPase domain YPA_2838 IPR013765 DNA recombination and repair protein RecA YPA_2838 IPR020584 DNA recombination/repair protein RecA, conserved site YPA_2838 IPR023400 DNA recombination and repair protein RecA, C-terminal YPA_2838 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPA_2839 IPR003783 Regulatory protein RecX YPA_2839 IPR036388 YPA_2839 YPA_2840 IPR002318 Alanine-tRNA ligase, class IIc YPA_2840 IPR009000 Translation protein, beta-barrel domain YPA_2840 IPR012947 Threonyl/alanyl tRNA synthetase, SAD YPA_2840 IPR018162 Alanine-tRNA ligase, class IIc, anti-codon-binding domain YPA_2840 IPR018163 Threonyl/alanyl tRNA synthetase, class II-like, putative editing domain YPA_2840 IPR018164 Alanyl-tRNA synthetase, class IIc, N-terminal YPA_2840 IPR023033 Alanine-tRNA ligase, eukaryota/bacteria YPA_2841 IPR006439 HAD hydrolase, subfamily IA YPA_2841 IPR010976 Beta-phosphoglucomutase hydrolase YPA_2841 IPR023198 Phosphoglycolate phosphatase, domain 2 YPA_2841 IPR023214 HAD-like domain YPA_2841 IPR036412 YPA_2841 YPA_2842 IPR020143 Uncharacterised protein family, RP436 YPA_2843 IPR006334 Glutamate--cysteine ligase, monofunctional YPA_2843 IPR007370 Glutamate--cysteine ligase YPA_2843 IPR014746 Glutamine synthetase/guanido kinase, catalytic domain YPA_2844 IPR003815 S-ribosylhomocysteinase (LuxS) YPA_2844 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like YPA_2844 IPR037005 YPA_2844 YPA_2845 IPR002686 Transposase IS200-like YPA_2845 IPR036515 YPA_2845 YPA_2846 IPR000644 CBS domain YPA_2846 IPR002550 Domain of unknown function DUF21 YPA_2846 IPR005170 Transporter-associated domain YPA_2846 IPR016169 CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2 YPA_2846 IPR036318 YPA_2846 YPA_2847 IPR002541 Cytochrome c assembly protein YPA_2848 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain YPA_2848 IPR003593 AAA+ ATPase domain YPA_2848 IPR004125 Signal recognition particle, SRP54 subunit, M-domain YPA_2848 IPR004780 Signal recognition particle protein Ffh YPA_2848 IPR013822 Signal recognition particle, SRP54 subunit, helical bundle YPA_2848 IPR022941 Signal recognition particle, SRP54 subunit YPA_2848 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPA_2848 IPR036891 YPA_2848 YPA_2849 IPR000307 Ribosomal protein S16 YPA_2849 IPR020592 Ribosomal protein S16, conserved site YPA_2849 IPR023803 Ribosomal protein S16 domain YPA_2850 IPR002676 RimM protein YPA_2850 IPR009000 Translation protein, beta-barrel domain YPA_2850 IPR011033 PRC-barrel-like YPA_2850 IPR011961 16S rRNA processing protein RimM YPA_2850 IPR027275 PRC-barrel domain YPA_2850 IPR036976 YPA_2850 YPA_2851 IPR002649 tRNA (guanine-N1-)-methyltransferase, bacteria YPA_2851 IPR016009 tRNA methyltransferase TRMD/TRM10-type domain YPA_2851 IPR023148 tRNA (guanine-N1-)-methyltransferase, C-terminal YPA_2851 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal YPA_2851 IPR029028 Alpha/beta knot methyltransferases YPA_2852 IPR001857 Ribosomal protein L19 YPA_2852 IPR008991 Translation protein SH3-like domain YPA_2852 IPR018257 Ribosomal protein L19, conserved site YPA_2852 IPR038657 YPA_2852 YPA_2853 IPR002686 Transposase IS200-like YPA_2853 IPR036515 YPA_2853 YPA_2854 IPR007433 Protein of unknown function DUF481 YPA_2855 IPR004668 Anaerobic c4-dicarboxylate membrane transporter YPA_2856 IPR004668 Anaerobic c4-dicarboxylate membrane transporter YPA_2857 IPR004668 Anaerobic c4-dicarboxylate membrane transporter YPA_2858 IPR001789 Signal transduction response regulator, receiver domain YPA_2858 IPR007492 LytTR DNA-binding domain YPA_2858 IPR011006 CheY-like superfamily YPA_2859 IPR006218 DAHP synthetase I/KDSA YPA_2859 IPR006219 DHAP synthase, class 1 YPA_2859 IPR013785 Aldolase-type TIM barrel YPA_2860 IPR002701 Chorismate mutase YPA_2860 IPR003099 Prephenate dehydrogenase YPA_2860 IPR008244 Bifunctional chorismate mutase/prephenate dehydrogenase T-protein YPA_2860 IPR008927 6-phosphogluconate dehydrogenase, C-terminal-like YPA_2860 IPR011277 Chorismate mutase, T-protein YPA_2860 IPR036263 YPA_2860 YPA_2860 IPR036291 YPA_2860 YPA_2860 IPR036979 YPA_2860 YPA_2861 IPR001086 Prephenate dehydratase YPA_2861 IPR018528 Prephenate dehydratase, conserved site YPA_2862 IPR001270 ClpA/B family YPA_2862 IPR002611 IstB-like ATP-binding protein YPA_2862 IPR003593 AAA+ ATPase domain YPA_2862 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPA_2862 IPR028350 DNA replication protein DnaC/insertion sequence putative ATP-binding protein YPA_2863 IPR001584 Integrase, catalytic core YPA_2863 IPR006120 Resolvase, HTH domain YPA_2863 IPR009057 Homeodomain-like YPA_2863 IPR012337 Ribonuclease H-like domain YPA_2864 IPR006367 Sirohaem synthase, N-terminal YPA_2864 IPR019478 Sirohaem synthase, dimerisation domain YPA_2864 IPR028281 Siroheme synthase, central domain YPA_2864 IPR036291 YPA_2864 YPA_2864 IPR037115 YPA_2864 YPA_2865 IPR012933 HicA mRNA interferase family YPA_2865 IPR038570 YPA_2865 YPA_2866 IPR013321 Arc-type ribbon-helix-helix YPA_2866 IPR031807 YPA_2866 YPA_2866 IPR035069 YPA_2866 YPA_2867 IPR002500 Phosphoadenosine phosphosulphate reductase YPA_2867 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold YPA_2868 IPR002500 Phosphoadenosine phosphosulphate reductase YPA_2868 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold YPA_2869 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain YPA_2869 IPR006066 Nitrite/sulphite reductase iron-sulphur/siroheam-binding site YPA_2869 IPR006067 Nitrite/sulphite reductase 4Fe-4S domain YPA_2869 IPR011786 Sulphite reductase (NADPH) hemoprotein, beta subunit YPA_2869 IPR036136 YPA_2869 YPA_2870 IPR001094 Flavodoxin YPA_2870 IPR001433 Oxidoreductase FAD/NAD(P)-binding YPA_2870 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase YPA_2870 IPR003097 FAD-binding, type 1 YPA_2870 IPR008254 Flavodoxin/nitric oxide synthase YPA_2870 IPR010199 Sulphite reductase [NADPH] flavoprotein, alpha chain YPA_2870 IPR017938 Riboflavin synthase-like beta-barrel YPA_2870 IPR023173 NADPH-cytochrome p450 reductase, FAD-binding, alpha-helical domain-3 YPA_2870 IPR029039 Flavoprotein-like YPA_2870 IPR029758 Sulphite reductase [NADPH] flavoprotein, alpha chain, Proteobacteria YPA_2870 IPR039261 YPA_2870 YPA_2871 IPR007115 6-pyruvoyl tetrahydropterin synthase/QueD family protein YPA_2871 IPR038418 YPA_2871 YPA_2872 IPR007197 Radical SAM YPA_2872 IPR013785 Aldolase-type TIM barrel YPA_2872 IPR024924 7-carboxy-7-deazaguanine synthase-like YPA_2872 IPR027609 Putative 7-carboxy-7-deazaguanine synthase QueE, Proteobacteria YPA_2873 IPR001424 Superoxide dismutase, copper/zinc binding domain YPA_2873 IPR018152 Superoxide dismutase, copper/zinc, binding site YPA_2873 IPR036423 YPA_2873 YPA_2874 IPR000941 Enolase YPA_2874 IPR020809 Enolase, conserved site YPA_2874 IPR020810 Enolase, C-terminal YPA_2874 IPR020811 Enolase, N-terminal YPA_2874 IPR029017 Enolase N-terminal domain-like YPA_2874 IPR036849 YPA_2874 YPA_2875 IPR004468 CTP synthase YPA_2875 IPR017456 CTP synthase, N-terminal YPA_2875 IPR017926 Glutamine amidotransferase YPA_2875 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPA_2875 IPR029062 Class I glutamine amidotransferase-like YPA_2876 IPR004518 NTP pyrophosphohydrolase MazG, putative catalytic core YPA_2876 IPR011551 NTP pyrophosphohydrolase MazG, bacterial YPA_2877 IPR002912 ACT domain YPA_2877 IPR003607 HD/PDEase domain YPA_2877 IPR004095 TGS YPA_2877 IPR004811 RelA/SpoT family YPA_2877 IPR007685 RelA/SpoT YPA_2877 IPR012675 Beta-grasp domain YPA_2877 IPR012676 TGS-like YPA_2878 IPR030391 YPA_2878 YPA_2880 IPR001789 Signal transduction response regulator, receiver domain YPA_2880 IPR003594 Histidine kinase-like ATPase, C-terminal domain YPA_2880 IPR003660 HAMP linker domain YPA_2880 IPR003661 Signal transduction histidine kinase EnvZ-like, dimerisation/phosphoacceptor domain YPA_2880 IPR004358 Signal transduction histidine kinase-related protein, C-terminal YPA_2880 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain YPA_2880 IPR011006 CheY-like superfamily YPA_2880 IPR019247 Histidine kinase BarA, N-terminal YPA_2880 IPR036097 YPA_2880 YPA_2880 IPR036641 YPA_2880 YPA_2880 IPR036890 YPA_2880 YPA_2881 IPR001478 PDZ domain YPA_2881 IPR001940 Peptidase S1C YPA_2881 IPR009003 Trypsin-like cysteine/serine peptidase domain YPA_2881 IPR011782 Peptidase S1C, Do YPA_2881 IPR036034 YPA_2881 YPA_2882 IPR003607 HD/PDEase domain YPA_2882 IPR006261 Deoxyguanosinetriphosphate triphosphohydrolase YPA_2882 IPR006674 HD domain YPA_2882 IPR020779 Deoxyguanosinetriphosphate triphosphohydrolase, proteobacteria YPA_2882 IPR023293 Deoxyguanosinetriphosphate triphosphohydrolase, central domain YPA_2882 IPR026875 Phosphohydrolase-associated domain YPA_2883 IPR000845 Nucleoside phosphorylase domain YPA_2883 IPR010049 MTA/SAH nucleosidase YPA_2883 IPR035994 YPA_2883 YPA_2884 IPR002491 ABC transporter periplasmic binding domain YPA_2884 IPR023544 ABC transporter, vitamin B12-binding protein YPA_2885 IPR005115 Uncharacterised domain UPF0126 YPA_2887 IPR000361 FeS cluster biogenesis YPA_2887 IPR016092 FeS cluster insertion protein YPA_2887 IPR017870 FeS cluster insertion, C-terminal, conserved site YPA_2887 IPR023063 Iron-sulfur cluster insertion protein ErpA YPA_2887 IPR035903 YPA_2887 YPA_2888 IPR001807 Chloride channel, voltage gated YPA_2888 IPR014743 Chloride channel, core YPA_2888 IPR023861 Chloride channel, ClcA YPA_2889 IPR004639 Tetrapyrrole biosynthesis, glutamate-1-semialdehyde aminotransferase YPA_2889 IPR005814 Aminotransferase class-III YPA_2889 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 YPA_2889 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 YPA_2889 IPR015424 Pyridoxal phosphate-dependent transferase YPA_2890 IPR000522 ABC transporter, permease protein YPA_2890 IPR037294 YPA_2890 YPA_2891 IPR002491 ABC transporter periplasmic binding domain YPA_2892 IPR003439 ABC transporter-like YPA_2892 IPR003593 AAA+ ATPase domain YPA_2892 IPR017871 ABC transporter, conserved site YPA_2892 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPA_2893 IPR001264 Glycosyl transferase, family 51 YPA_2893 IPR001460 Penicillin-binding protein, transpeptidase YPA_2893 IPR011813 Penicillin-binding protein 1B YPA_2893 IPR012338 Beta-lactamase/transpeptidase-like YPA_2893 IPR023346 Lysozyme-like domain YPA_2893 IPR028166 Bifunctional transglycosylase second domain YPA_2893 IPR032730 YPA_2893 YPA_2893 IPR036950 YPA_2893 YPA_2894 IPR001650 Helicase, C-terminal YPA_2894 IPR007502 Helicase-associated domain YPA_2894 IPR010225 RNA helicase, ATP-dependent DEAH box, HrpB-type YPA_2894 IPR011545 DEAD/DEAH box helicase domain YPA_2894 IPR013689 RNA helicase, ATP-dependent, HrpB type, C-terminal YPA_2894 IPR014001 Helicase, superfamily 1/2, ATP-binding domain YPA_2894 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPA_2895 IPR004175 2',5' RNA ligase YPA_2895 IPR009097 RNA ligase/cyclic nucleotide phosphodiesterase YPA_2895 IPR014051 Phosphoesterase, HXTX YPA_2896 IPR005224 Sugar fermentation stimulation protein YPA_2898 IPR000962 Zinc finger, DksA/TraR C4-type YPA_2898 IPR012784 RNA polymerase-binding transcription factor DksA YPA_2898 IPR020458 Zinc finger, DksA/TraR C4-type conserved site YPA_2898 IPR020460 Zinc finger, DksA/TraR C4-type, bacteria YPA_2898 IPR037187 YPA_2898 YPA_2899 IPR000924 Glutamyl/glutaminyl-tRNA synthetase YPA_2899 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold YPA_2899 IPR020058 Glutamyl/glutaminyl-tRNA synthetase, class Ib, catalytic domain YPA_2899 IPR022380 Glutamyl-Q tRNA(Asp) synthetase YPA_2900 IPR002646 Poly A polymerase, head domain YPA_2900 IPR010206 Poly(A) polymerase I YPA_2900 IPR025866 Polymerase A arginine-rich C-terminal domain YPA_2900 IPR032828 YPA_2900 YPA_2901 IPR000550 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK YPA_2901 IPR035907 YPA_2901 YPA_2902 IPR003700 Ketopantoate hydroxymethyltransferase YPA_2902 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain YPA_2903 IPR003721 Pantoate-beta-alanine ligase YPA_2903 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold YPA_2904 IPR003190 Aspartate decarboxylase YPA_2904 IPR009010 Aspartate decarboxylase-like domain YPA_2905 IPR002509 Polysaccharide deacetylase YPA_2905 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel YPA_2907 IPR000412 ABC-2 transporter YPA_2907 IPR013525 ABC-2 type transporter YPA_2908 IPR003439 ABC transporter-like YPA_2908 IPR003593 AAA+ ATPase domain YPA_2908 IPR017871 ABC transporter, conserved site YPA_2908 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPA_2909 IPR001765 Carbonic anhydrase YPA_2909 IPR015892 Carbonic anhydrase, prokaryotic-like, conserved site YPA_2909 IPR036874 YPA_2909 YPA_2910 IPR000836 Phosphoribosyltransferase domain YPA_2910 IPR005904 Hypoxanthine phosphoribosyl transferase YPA_2910 IPR029057 Phosphoribosyltransferase-like YPA_2911 IPR001117 Multicopper oxidase, type 1 YPA_2911 IPR002355 Multicopper oxidase, copper-binding site YPA_2911 IPR008972 Cupredoxin YPA_2911 IPR011706 Multicopper oxidase, type 2 YPA_2911 IPR011707 Multicopper oxidase, type 3 YPA_2911 IPR019546 Twin-arginine translocation pathway, signal sequence, bacterial/archaeal YPA_2912 IPR019114 Chaperone lipoprotein, PulS/OutS-like YPA_2912 IPR038432 YPA_2912 YPA_2913 IPR001045 Spermidine/spermine synthases family YPA_2913 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase-like YPA_2913 IPR030373 YPA_2913 YPA_2913 IPR035246 YPA_2913 YPA_2913 IPR037163 YPA_2913 YPA_2914 IPR003826 S-adenosylmethionine decarboxylase family, prokaryotic YPA_2914 IPR009165 S-adenosylmethionine decarboxylase, bacterial YPA_2914 IPR016067 S-adenosylmethionine decarboxylase, core YPA_2915 IPR000620 Drug/metabolite transporter YPA_2916 IPR008249 Uncharacterised protein family UPF0231 YPA_2917 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha YPA_2917 IPR004406 Aconitase B, bacterial YPA_2917 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel YPA_2917 IPR015929 Aconitase B, N-terminal, bacterial YPA_2917 IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 YPA_2917 IPR015932 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 2 YPA_2917 IPR015933 Aconitase B, HEAT-like, bacterial YPA_2917 IPR018136 Aconitase family, 4Fe-4S cluster binding site YPA_2917 IPR036008 YPA_2917 YPA_2917 IPR036288 YPA_2917 YPA_2918 IPR002686 Transposase IS200-like YPA_2918 IPR036515 YPA_2918 YPA_2919 IPR001100 YPA_2919 YPA_2919 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain YPA_2919 IPR006258 Dihydrolipoamide dehydrogenase YPA_2919 IPR012999 Pyridine nucleotide-disulphide oxidoreductase, class I, active site YPA_2919 IPR016156 FAD/NAD-linked reductase, dimerisation domain YPA_2919 IPR023753 Pyridine nucleotide-disulphide oxidoreductase, FAD/NAD(P)-binding domain YPA_2919 IPR036188 YPA_2919 YPA_2920 IPR000089 Biotin/lipoyl attachment YPA_2920 IPR001078 2-oxoacid dehydrogenase acyltransferase, catalytic domain YPA_2920 IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site YPA_2920 IPR004167 E3 binding YPA_2920 IPR006256 Dihydrolipoamide acetyltransferase pyruvate dehydrogenase complex YPA_2920 IPR011053 Single hybrid motif YPA_2920 IPR023213 Chloramphenicol acetyltransferase-like domain YPA_2920 IPR036625 YPA_2920 YPA_2921 IPR004660 2-oxo-acid dehydrogenase E1 component homodimeric type YPA_2921 IPR005474 Transketolase, N-terminal YPA_2921 IPR009014 Transketolase, C-terminal/Pyruvate-ferredoxin oxidoreductase, domain II YPA_2921 IPR029061 Thiamin diphosphate-binding fold YPA_2922 IPR000524 Transcription regulator HTH, GntR YPA_2922 IPR008920 Transcription regulator FadR/GntR, C-terminal YPA_2922 IPR011711 GntR, C-terminal YPA_2922 IPR036388 YPA_2922 YPA_2922 IPR036390 YPA_2922 YPA_2923 IPR002293 Amino acid/polyamine transporter I YPA_2923 IPR004840 Amino acid permease, conserved site YPA_2923 IPR004841 Amino acid permease/ SLC12A domain YPA_2924 IPR031347 YPA_2924 YPA_2925 IPR002502 N-acetylmuramoyl-L-alanine amidase domain YPA_2925 IPR036505 YPA_2925 YPA_2926 IPR002638 Quinolinate phosphoribosyl transferase, C-terminal YPA_2926 IPR004393 Nicotinate-nucleotide pyrophosphorylase YPA_2926 IPR013785 Aldolase-type TIM barrel YPA_2926 IPR022412 Quinolinate phosphoribosyl transferase, N-terminal YPA_2926 IPR027277 Nicotinate-nucleotide pyrophosphorylase/Putative pyrophosphorylase ModD YPA_2926 IPR036068 YPA_2926 YPA_2926 IPR037128 YPA_2926 YPA_2927 IPR012902 Prokaryotic N-terminal methylation site YPA_2928 IPR001482 Type II secretion system protein E YPA_2928 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPA_2929 IPR001992 Type II secretion system conserved site YPA_2929 IPR003004 GspF/PilC family YPA_2929 IPR018076 Type II secretion system F domain YPA_2930 IPR001093 IMP dehydrogenase/GMP reductase YPA_2930 IPR005993 Guanosine monophosphate reductase 1 YPA_2930 IPR013785 Aldolase-type TIM barrel YPA_2930 IPR015875 IMP dehydrogenase / GMP reductase, conserved site YPA_2931 IPR001977 Dephospho-CoA kinase YPA_2931 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPA_2932 IPR009777 Cell division protein ZapD YPA_2932 IPR027462 Z ring-associated protein D, C-terminal domain YPA_2932 IPR036268 YPA_2932 YPA_2933 IPR005584 DNA gyrase inhibitor YacG YPA_2933 IPR013088 Zinc finger, NHR/GATA-type YPA_2934 IPR002686 Transposase IS200-like YPA_2934 IPR036515 YPA_2934 YPA_2935 IPR001584 Integrase, catalytic core YPA_2935 IPR006120 Resolvase, HTH domain YPA_2935 IPR009057 Homeodomain-like YPA_2935 IPR012337 Ribonuclease H-like domain YPA_2936 IPR001270 ClpA/B family YPA_2936 IPR002611 IstB-like ATP-binding protein YPA_2936 IPR003593 AAA+ ATPase domain YPA_2936 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPA_2936 IPR028350 DNA replication protein DnaC/insertion sequence putative ATP-binding protein YPA_2937 IPR036890 YPA_2937 YPA_2938 IPR004919 Domain of unknown function DUF262 YPA_2938 IPR011089 Domain of unknown function DUF1524 YPA_2939 IPR002104 Integrase, catalytic YPA_2939 IPR010998 Integrase, Lambda-type, N-terminal YPA_2939 IPR011010 DNA breaking-rejoining enzyme, catalytic core YPA_2939 IPR013762 Integrase-like, catalytic core YPA_2939 IPR025166 Domain of unknown function DUF4102 YPA_2939 IPR038488 YPA_2939 YPA_2940 IPR005495 Permease YjgP/YjgQ, predicted YPA_2940 IPR030923 YPA_2940 YPA_2941 IPR005495 Permease YjgP/YjgQ, predicted YPA_2941 IPR030922 YPA_2941 YPA_2942 IPR000819 Peptidase M17, leucyl aminopeptidase, C-terminal YPA_2942 IPR008283 Peptidase M17, leucyl aminopeptidase, N-terminal YPA_2942 IPR011356 Leucine aminopeptidase/peptidase B YPA_2942 IPR023042 Peptidase M17, leucine aminopeptidase YPA_2943 IPR007459 DNA polymerase III chi subunit, HolC YPA_2943 IPR036768 YPA_2943 YPA_2944 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site YPA_2944 IPR002300 Aminoacyl-tRNA synthetase, class Ia YPA_2944 IPR002303 Valine-tRNA ligase YPA_2944 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain YPA_2944 IPR009080 Aminoacyl-tRNA synthetase, class 1a, anticodon-binding YPA_2944 IPR010978 tRNA-binding arm YPA_2944 IPR013155 Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding YPA_2944 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold YPA_2944 IPR019499 Valyl-tRNA synthetase, tRNA-binding arm YPA_2944 IPR037118 YPA_2944 YPA_2945 IPR000182 GNAT domain YPA_2945 IPR016181 Acyl-CoA N-acyltransferase YPA_2946 IPR009671 Regulator of ribonuclease activity B domain YPA_2946 IPR016716 Regulator of ribonuclease activity B YPA_2946 IPR036701 YPA_2946 YPA_2947 IPR006130 Aspartate/ornithine carbamoyltransferase YPA_2947 IPR006132 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding YPA_2947 IPR036901 YPA_2947 YPA_2948 IPR002292 Ornithine/putrescine carbamoyltransferase YPA_2948 IPR006130 Aspartate/ornithine carbamoyltransferase YPA_2948 IPR006131 Aspartate/ornithine carbamoyltransferase, Asp/Orn-binding domain YPA_2948 IPR006132 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding YPA_2948 IPR036901 YPA_2948 YPA_2949 IPR004375 Conserved hypothetical protein CHP00022 YPA_2949 IPR037012 YPA_2949 YPA_2950 IPR000914 Bacterial extracellular solute-binding protein, family 5 YPA_2952 IPR000515 MetI-like domain YPA_2952 IPR035906 YPA_2952 YPA_2953 IPR000515 MetI-like domain YPA_2953 IPR025966 Oligopeptide transport permease C-like, N-terminal domain YPA_2953 IPR035906 YPA_2953 YPA_2954 IPR003439 ABC transporter-like YPA_2954 IPR003593 AAA+ ATPase domain YPA_2954 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPA_2955 IPR003439 ABC transporter-like YPA_2955 IPR003593 AAA+ ATPase domain YPA_2955 IPR017871 ABC transporter, conserved site YPA_2955 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPA_2956 IPR005144 ATP-cone YPA_2956 IPR012833 Ribonucleoside-triphosphate reductase, anaerobic YPA_2956 IPR019777 Formate C-acetyltransferase glycine radical, conserved site YPA_2957 IPR001989 Radical-activating enzyme, conserved site YPA_2957 IPR012837 Ribonucleoside-triphosphate reductase activating, anaerobic YPA_2957 IPR013785 Aldolase-type TIM barrel YPA_2958 IPR000524 Transcription regulator HTH, GntR YPA_2958 IPR011663 UbiC transcription regulator-associated YPA_2958 IPR012702 Phosphonate C-P lyase system, transcriptional regulator PhnF YPA_2958 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain YPA_2958 IPR036388 YPA_2958 YPA_2958 IPR036390 YPA_2958 YPA_2959 IPR009609 Phosphonate metabolism PhnG YPA_2960 IPR008772 Bacterial phosphonate metabolism, PhnH YPA_2960 IPR038058 YPA_2960 YPA_2961 IPR008773 Phosphonate metabolism protein PhnI YPA_2962 IPR010306 Phosphonate metabolism PhnJ YPA_2963 IPR003439 ABC transporter-like YPA_2963 IPR003593 AAA+ ATPase domain YPA_2963 IPR012700 Phosphonate C-P lyase system, PhnK YPA_2963 IPR017871 ABC transporter, conserved site YPA_2963 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPA_2964 IPR003439 ABC transporter-like YPA_2964 IPR003593 AAA+ ATPase domain YPA_2964 IPR012701 Phosphonate C-P lyase system, PhnL YPA_2964 IPR017871 ABC transporter, conserved site YPA_2964 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPA_2965 IPR011059 Metal-dependent hydrolase, composite domain YPA_2965 IPR012696 Phosphonate metabolism PhnM YPA_2965 IPR013108 Amidohydrolase 3 YPA_2965 IPR032466 YPA_2965 YPA_2966 IPR008145 Guanylate kinase/L-type calcium channel beta subunit YPA_2966 IPR012699 Ribose 1,5-bisphosphate phosphokinase PhnN YPA_2966 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPA_2967 IPR001279 Beta-lactamase-like YPA_2967 IPR017693 Phosphonate metabolism protein PhnP YPA_2967 IPR036866 YPA_2967 YPA_2968 IPR000534 Semialdehyde dehydrogenase, NAD-binding YPA_2968 IPR036291 YPA_2968 YPA_2969 IPR011194 Uncharacterised protein family UPF0306 YPA_2969 IPR012349 FMN-binding split barrel YPA_2970 IPR008397 Alginate lyase domain YPA_2970 IPR008929 Chondroitin AC/alginate lyase YPA_2971 IPR003439 ABC transporter-like YPA_2971 IPR003593 AAA+ ATPase domain YPA_2971 IPR008995 Molybdate/tungstate binding, C-terminal YPA_2971 IPR013611 Transport-associated OB, type 2 YPA_2971 IPR017871 ABC transporter, conserved site YPA_2971 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPA_2972 IPR000515 MetI-like domain YPA_2972 IPR035906 YPA_2972 YPA_2973 IPR000515 MetI-like domain YPA_2973 IPR035906 YPA_2973 YPA_2974 IPR006059 Bacterial extracellular solute-binding, family 1 YPA_2975 IPR008397 Alginate lyase domain YPA_2975 IPR008929 Chondroitin AC/alginate lyase YPA_2976 IPR008397 Alginate lyase domain YPA_2976 IPR008929 Chondroitin AC/alginate lyase YPA_2976 IPR012480 Heparinase II/III-like YPA_2977 IPR000305 GIY-YIG nuclease superfamily YPA_2977 IPR022992 Uncharacterised protein family UPF0213, GIY-YIG endonuclease YPA_2977 IPR035901 YPA_2977 YPA_2978 IPR000182 GNAT domain YPA_2978 IPR016181 Acyl-CoA N-acyltransferase YPA_2979 IPR003033 SCP2 sterol-binding domain YPA_2979 IPR016830 Uncharacterised conserved protein UCP025550, lipid carrier protein, YhbT YPA_2979 IPR036527 YPA_2979 YPA_2981 IPR001539 Peptidase U32 YPA_2981 IPR036206 YPA_2981 YPA_2982 IPR001539 Peptidase U32 YPA_2983 IPR003423 Outer membrane efflux protein YPA_2983 IPR010131 RND efflux system, outer membrane lipoprotein, NodT YPA_2984 IPR001036 Acriflavin resistance protein YPA_2984 IPR004764 Hydrophobe/amphiphile efflux-1 HAE1 YPA_2984 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains YPA_2985 IPR006143 RND efflux pump, membrane fusion protein YPA_2985 IPR032317 YPA_2985 YPA_2986 IPR011251 Luciferase-like domain YPA_2986 IPR019949 Luciferase family oxidoreductase, group 1 YPA_2986 IPR036661 YPA_2986 YPA_2987 IPR001387 Cro/C1-type helix-turn-helix domain YPA_2987 IPR010982 Lambda repressor-like, DNA-binding domain YPA_2988 IPR009241 Addiction module killer protein YPA_2990 IPR000629 RNA helicase, ATP-dependent, DEAD-box, conserved site YPA_2990 IPR001650 Helicase, C-terminal YPA_2990 IPR005580 DbpA, RNA-binding YPA_2990 IPR011545 DEAD/DEAH box helicase domain YPA_2990 IPR012677 Nucleotide-binding, alpha-beta plait YPA_2990 IPR014001 Helicase, superfamily 1/2, ATP-binding domain YPA_2990 IPR021046 Cold-shock protein, DEAD box A, C-terminal YPA_2990 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPA_2990 IPR028618 ATP-dependent RNA helicase DeaD YPA_2991 IPR011990 Tetratricopeptide-like helical domain YPA_2991 IPR013105 Tetratricopeptide TPR2 YPA_2991 IPR019734 Tetratricopeptide repeat YPA_2991 IPR023605 Lipoprotein NlpI YPA_2992 IPR001247 Exoribonuclease, phosphorolytic domain 1 YPA_2992 IPR003029 Ribosomal protein S1, RNA-binding domain YPA_2992 IPR004087 K Homology domain YPA_2992 IPR004088 K Homology domain, type 1 YPA_2992 IPR012162 Polyribonucleotide nucleotidyltransferase YPA_2992 IPR012340 Nucleic acid-binding, OB-fold YPA_2992 IPR015847 Exoribonuclease, phosphorolytic domain 2 YPA_2992 IPR015848 Polyribonucleotide nucleotidyltransferase, RNA-binding domain YPA_2992 IPR020568 Ribosomal protein S5 domain 2-type fold YPA_2992 IPR022967 RNA-binding domain, S1 YPA_2992 IPR027408 PNPase/RNase PH domain YPA_2992 IPR036345 YPA_2992 YPA_2992 IPR036456 YPA_2992 YPA_2992 IPR036612 YPA_2992 YPA_2993 IPR001584 Integrase, catalytic core YPA_2993 IPR012337 Ribonuclease H-like domain YPA_2993 IPR025948 HTH-like domain YPA_2993 IPR036397 YPA_2993 YPA_2994 IPR009057 Homeodomain-like YPA_2994 IPR010921 Trp repressor/replication initiator YPA_2995 IPR003462 Ornithine cyclodeaminase/mu-crystallin YPA_2995 IPR023401 Ornithine cyclodeaminase, N-terminal YPA_2995 IPR036291 YPA_2995 YPA_2996 IPR000634 Serine/threonine dehydratase, pyridoxal-phosphate-binding site YPA_2996 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme YPA_2996 IPR036052 YPA_2996 YPA_2998 IPR011042 Six-bladed beta-propeller, TolB-like YPA_2998 IPR011659 WD40-like Beta Propeller YPA_2999 IPR010780 Protein of unknown function DUF1375 YPA_3000 IPR002068 Alpha crystallin/Hsp20 domain YPA_3000 IPR008978 HSP20-like chaperone YPA_3000 IPR023728 Small heat shock protein IbpA YPA_3001 IPR002068 Alpha crystallin/Hsp20 domain YPA_3001 IPR008978 HSP20-like chaperone YPA_3001 IPR022848 Small heat shock protein IbpB YPA_3002 IPR006037 Regulator of K+ conductance, C-terminal YPA_3002 IPR006512 YidE/YbjL duplication YPA_3002 IPR023018 Transport protein YidE, putative YPA_3002 IPR036721 YPA_3002 YPA_3003 IPR004839 Aminotransferase, class I/classII YPA_3003 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 YPA_3003 IPR015424 Pyridoxal phosphate-dependent transferase YPA_3005 IPR006047 Glycosyl hydrolase, family 13, catalytic domain YPA_3005 IPR014635 Alpha-amylase, MalS type YPA_3005 IPR017853 Glycoside hydrolase, superfamily YPA_3006 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain YPA_3006 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain YPA_3006 IPR023756 Glyoxylate/hydroxypyruvate reductase B YPA_3006 IPR029752 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site 1 YPA_3006 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site YPA_3006 IPR036291 YPA_3006 YPA_3007 IPR036388 YPA_3007 YPA_3007 IPR036390 YPA_3007 YPA_3008 IPR006664 Outer membrane protein, bacterial YPA_3008 IPR006665 Outer membrane protein, OmpA/MotB, C-terminal YPA_3008 IPR036737 YPA_3008 YPA_3008 IPR039567 YPA_3008 YPA_3009 IPR000182 GNAT domain YPA_3009 IPR016181 Acyl-CoA N-acyltransferase YPA_3010 IPR004597 DNA-3-methyladenine glycosylase I YPA_3010 IPR005019 Methyladenine glycosylase YPA_3010 IPR011257 DNA glycosylase YPA_3011 IPR002310 Glycine-tRNA ligase, alpha subunit YPA_3012 IPR008909 DALR anticodon binding YPA_3012 IPR015944 Glycine-tRNA ligase, beta subunit YPA_3013 IPR021413 Protein of unknown function DUF3053 YPA_3014 IPR002178 PTS EIIA type-2 domain YPA_3014 IPR003352 Phosphotransferase system, EIIC YPA_3014 IPR003501 Phosphotransferase system, EIIB component, type 2/3 YPA_3014 IPR004718 Phosphotransferase system, mannitol-specific enzyme IIC YPA_3014 IPR016152 Phosphotransferase/anion transporter YPA_3014 IPR036095 YPA_3014 YPA_3015 IPR000669 Mannitol dehydrogenase YPA_3015 IPR008927 6-phosphogluconate dehydrogenase, C-terminal-like YPA_3015 IPR013118 Mannitol dehydrogenase, C-terminal YPA_3015 IPR013131 Mannitol dehydrogenase, N-terminal YPA_3015 IPR013328 Dehydrogenase, multihelical YPA_3015 IPR023027 Mannitol dehydrogenase, conserved site YPA_3015 IPR023028 Mannitol-1-phosphate 5-dehydrogenase YPA_3015 IPR036291 YPA_3015 YPA_3016 IPR007761 Mannitol repressor YPA_3016 IPR038026 YPA_3016 YPA_3017 IPR021230 Protein of unknown function DUF2810 YPA_3018 IPR019545 DM13 domain YPA_3020 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain YPA_3020 IPR004090 Chemotaxis methyl-accepting receptor YPA_3021 IPR001270 ClpA/B family YPA_3021 IPR002611 IstB-like ATP-binding protein YPA_3021 IPR003593 AAA+ ATPase domain YPA_3021 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPA_3021 IPR028350 DNA replication protein DnaC/insertion sequence putative ATP-binding protein YPA_3022 IPR001584 Integrase, catalytic core YPA_3022 IPR006120 Resolvase, HTH domain YPA_3022 IPR009057 Homeodomain-like YPA_3022 IPR012337 Ribonuclease H-like domain YPA_3023 IPR003660 HAMP linker domain YPA_3023 IPR032255 YPA_3023 YPA_3024 IPR001189 Manganese/iron superoxide dismutase YPA_3024 IPR019831 Manganese/iron superoxide dismutase, N-terminal YPA_3024 IPR019832 Manganese/iron superoxide dismutase, C-terminal YPA_3024 IPR019833 Manganese/iron superoxide dismutase, binding site YPA_3024 IPR036314 YPA_3024 YPA_3024 IPR036324 YPA_3024 YPA_3025 IPR003786 Protein FdhD YPA_3025 IPR016193 Cytidine deaminase-like YPA_3026 IPR006656 Molybdopterin oxidoreductase YPA_3026 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain YPA_3026 IPR027467 Molybdopterin oxidoreductase, molybdopterin cofactor binding site YPA_3027 IPR006443 Formate dehydrogenase, alpha subunit, anaerobic YPA_3027 IPR006655 Molybdopterin oxidoreductase, prokaryotic, conserved site YPA_3027 IPR006656 Molybdopterin oxidoreductase YPA_3027 IPR006657 Molydopterin dinucleotide-binding domain YPA_3027 IPR009010 Aspartate decarboxylase-like domain YPA_3028 IPR006470 Formate dehydrogenase, beta subunit YPA_3028 IPR014603 Formate dehydrogenase, iron-sulphur subunit YPA_3028 IPR015246 Formate dehydrogenase, transmembrane YPA_3028 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain YPA_3028 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site YPA_3028 IPR038384 YPA_3028 YPA_3029 IPR006471 Formate dehydrogenase, gamma subunit YPA_3029 IPR011577 Cytochrome b561, bacterial/Ni-hydrogenase YPA_3029 IPR016174 Di-haem cytochrome, transmembrane YPA_3030 IPR006452 Formate dehydrogenase accessory protein YPA_3030 IPR024064 FdhE-like YPA_3031 IPR004534 L-seryl-tRNA selenium transferase YPA_3031 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 YPA_3031 IPR015424 Pyridoxal phosphate-dependent transferase YPA_3031 IPR018319 L-seryl-tRNA selenium transferase-like YPA_3031 IPR025862 L-seryl-tRNA selenium transferase N-terminal domain YPA_3032 IPR000795 Elongation factor, GTP-binding domain YPA_3032 IPR004535 Translation elongation factor, selenocysteine-specific YPA_3032 IPR009000 Translation protein, beta-barrel domain YPA_3032 IPR009001 Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal YPA_3032 IPR015190 Translation elongation factor SelB, winged helix, type 2 YPA_3032 IPR015191 Translation elongation factor SelB, winged helix, type 3 YPA_3032 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPA_3032 IPR031157 YPA_3032 YPA_3032 IPR036388 YPA_3032 YPA_3032 IPR036390 YPA_3032 YPA_3033 IPR002513 Tn3 transposase DDE domain YPA_3035 IPR025320 Protein of unknown function DUF4225 YPA_3037 IPR011701 Major facilitator superfamily YPA_3037 IPR036259 YPA_3037 YPA_3038 IPR001584 Integrase, catalytic core YPA_3038 IPR012337 Ribonuclease H-like domain YPA_3038 IPR025948 HTH-like domain YPA_3038 IPR036397 YPA_3038 YPA_3039 IPR009057 Homeodomain-like YPA_3039 IPR010921 Trp repressor/replication initiator YPA_3043 IPR006665 Outer membrane protein, OmpA/MotB, C-terminal YPA_3043 IPR025713 Motility protein B, N-terminal domain YPA_3043 IPR036737 YPA_3043 YPA_3044 IPR000540 Flagellar motor protein MotA, conserved site YPA_3044 IPR002898 MotA/TolQ/ExbB proton channel YPA_3044 IPR022522 Flagellar motor stator, MotA YPA_3045 IPR000943 RNA polymerase sigma-70 YPA_3045 IPR007624 RNA polymerase sigma-70 region 3 YPA_3045 IPR007627 RNA polymerase sigma-70 region 2 YPA_3045 IPR007630 RNA polymerase sigma-70 region 4 YPA_3045 IPR012845 RNA polymerase sigma factor, FliA/WhiG YPA_3045 IPR013324 RNA polymerase sigma factor, region 3/4 YPA_3045 IPR013325 RNA polymerase sigma factor, region 2 YPA_3045 IPR014284 RNA polymerase sigma-70 like domain YPA_3046 IPR005503 Flagellar basal body-associated protein FliL YPA_3047 IPR011004 Trimeric LpxA-like YPA_3047 IPR018357 Hexapeptide transferase, conserved site YPA_3047 IPR021136 Flagellar hook-length control protein-like, C-terminal YPA_3047 IPR038610 YPA_3047 YPA_3049 IPR003713 Flagellar protein FliS YPA_3049 IPR036584 YPA_3049 YPA_3050 IPR003481 Flagellar hook-associated protein 2, N-terminal YPA_3050 IPR010809 Flagellar hook-associated 2, C-terminal YPA_3050 IPR010810 Flagellin hook, IN motif YPA_3051 IPR001029 Flagellin, D0/D1 domain YPA_3051 IPR001492 Flagellin YPA_3052 IPR001029 Flagellin, D0/D1 domain YPA_3052 IPR001492 Flagellin YPA_3053 IPR001029 Flagellin, D0/D1 domain YPA_3053 IPR001492 Flagellin YPA_3054 IPR001867 Signal transduction response regulator, C-terminal YPA_3054 IPR016032 Signal transduction response regulator, C-terminal effector YPA_3054 IPR036388 YPA_3054 YPA_3057 IPR001029 Flagellin, D0/D1 domain YPA_3057 IPR013384 Flagellar hook-associated protein 3 YPA_3058 IPR001444 Flagellar basal body rod protein, N-terminal YPA_3058 IPR002371 Flagellar hook-associated protein, FlgK YPA_3058 IPR010930 Flagellar basal-body/hook protein, C-terminal domain YPA_3059 IPR019301 Flagellar protein FlgJ, N-terminal YPA_3060 IPR001782 Flagellar P-ring protein YPA_3061 IPR000527 Flagellar L-ring protein YPA_3062 IPR001444 Flagellar basal body rod protein, N-terminal YPA_3062 IPR010930 Flagellar basal-body/hook protein, C-terminal domain YPA_3062 IPR012834 Flagellar basal-body rod FlgG YPA_3062 IPR019776 Flagellar basal body rod protein, conserved site YPA_3062 IPR020013 Fagellar hook-basal body protein, FlgE/F/G YPA_3062 IPR037925 YPA_3062 YPA_3063 IPR001444 Flagellar basal body rod protein, N-terminal YPA_3063 IPR010930 Flagellar basal-body/hook protein, C-terminal domain YPA_3063 IPR012836 Flagellar basal-body rod FlgF YPA_3063 IPR020013 Fagellar hook-basal body protein, FlgE/F/G YPA_3063 IPR037925 YPA_3063 YPA_3064 IPR001444 Flagellar basal body rod protein, N-terminal YPA_3064 IPR010930 Flagellar basal-body/hook protein, C-terminal domain YPA_3064 IPR011491 Flagellar basal body FlaE YPA_3064 IPR019776 Flagellar basal body rod protein, conserved site YPA_3064 IPR020013 Fagellar hook-basal body protein, FlgE/F/G YPA_3064 IPR037058 YPA_3064 YPA_3064 IPR037925 YPA_3064 YPA_3065 IPR005648 Flagellar hook capping protein YPA_3065 IPR025963 FlgD Tudor-like domain YPA_3065 IPR025965 FlgD Ig-like domain YPA_3066 IPR001444 Flagellar basal body rod protein, N-terminal YPA_3066 IPR006299 Flagellar basal-body rod protein FlgC YPA_3066 IPR010930 Flagellar basal-body/hook protein, C-terminal domain YPA_3066 IPR019776 Flagellar basal body rod protein, conserved site YPA_3067 IPR001444 Flagellar basal body rod protein, N-terminal YPA_3067 IPR006300 Flagellar basal-body rod protein FlgB YPA_3067 IPR019776 Flagellar basal body rod protein, conserved site YPA_3068 IPR013974 SAF domain YPA_3068 IPR017585 Flagella basal body P-ring formation protein FlgA, C-terminal YPA_3069 IPR007412 Anti-sigma-28 factor, FlgM YPA_3069 IPR031316 YPA_3069 YPA_3069 IPR035890 YPA_3069 YPA_3070 IPR007809 FlgN-like domain YPA_3070 IPR036679 YPA_3070 YPA_3071 IPR012823 Flagellar export FliJ YPA_3072 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain YPA_3072 IPR003593 AAA+ ATPase domain YPA_3072 IPR005714 ATPase, type III secretion system, FliI/YscN YPA_3072 IPR020003 ATPase, alpha/beta subunit, nucleotide-binding domain, active site YPA_3072 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPA_3073 IPR018035 Flagellar assembly protein FliH/Type III secretion system HrpE YPA_3073 IPR019191 Essential protein Yae1, N-terminal YPA_3074 IPR011002 Flagellar motor switch protein FliG, alpha-helical YPA_3074 IPR023087 YPA_3074 YPA_3074 IPR032779 YPA_3074 YPA_3075 IPR001584 Integrase, catalytic core YPA_3075 IPR006120 Resolvase, HTH domain YPA_3075 IPR009057 Homeodomain-like YPA_3075 IPR012337 Ribonuclease H-like domain YPA_3076 IPR001270 ClpA/B family YPA_3076 IPR002611 IstB-like ATP-binding protein YPA_3076 IPR003593 AAA+ ATPase domain YPA_3076 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPA_3076 IPR028350 DNA replication protein DnaC/insertion sequence putative ATP-binding protein YPA_3077 IPR000090 Flagellar motor switch protein FliG YPA_3077 IPR011002 Flagellar motor switch protein FliG, alpha-helical YPA_3077 IPR028263 Flagellar motor switch protein FliG, N-terminal domain YPA_3078 IPR000067 Flagellar M-ring protein FliF YPA_3078 IPR006182 Secretory protein YscJ/FliF YPA_3078 IPR013556 Flagellar M-ring C-terminal YPA_3079 IPR001624 Flagellar hook-basal body complex protein FliE YPA_3080 IPR002078 RNA polymerase sigma factor 54 interaction domain YPA_3080 IPR002197 DNA binding HTH domain, Fis-type YPA_3080 IPR003593 AAA+ ATPase domain YPA_3080 IPR009057 Homeodomain-like YPA_3080 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 YPA_3080 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 YPA_3080 IPR025944 Sigma-54 interaction domain, conserved site YPA_3080 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPA_3082 IPR001543 Surface presentation of antigen (SpoA) YPA_3082 IPR036429 YPA_3082 YPA_3083 IPR001172 Flagellar motor switch FliN/Type III secretion HrcQb YPA_3083 IPR001543 Surface presentation of antigen (SpoA) YPA_3083 IPR012826 Flagellar motor switch FliN YPA_3083 IPR036429 YPA_3083 YPA_3084 IPR005837 Flagellar transport protein FliP YPA_3084 IPR005838 Type III secretion system inner membrane P protein YPA_3085 IPR002191 Bacterial export protein family 3 YPA_3085 IPR006305 Flagellar biosynthesis protein FliQ YPA_3086 IPR002010 Type III secretion system inner membrane R protein YPA_3087 IPR006135 Type III secretion system substrate exporter YPA_3087 IPR006136 Type III exporter system, flagellar biosynthetic protein FlhB YPA_3087 IPR029025 Type III secretion system substrate exporter, C-terminal YPA_3088 IPR001712 Type III secretion system FHIPEP YPA_3088 IPR025505 FHIPEP conserved site YPA_3090 IPR021326 Protein of unknown function DUF2931 YPA_3092 IPR002491 ABC transporter periplasmic binding domain YPA_3093 IPR000259 Fimbrial-type adhesion domain YPA_3093 IPR008966 Adhesion domain YPA_3093 IPR036937 YPA_3093 YPA_3094 IPR001829 Pili assembly chaperone, bacterial YPA_3094 IPR008962 PapD-like YPA_3094 IPR013783 Immunoglobulin-like fold YPA_3094 IPR016147 PapD, N-terminal, bacterial YPA_3094 IPR016148 Pili assembly chaperone, C-terminal domain YPA_3094 IPR018046 Pili assembly chaperone, conserved site YPA_3094 IPR036316 YPA_3094 YPA_3095 IPR000015 Outer membrane usher protein YPA_3095 IPR025885 PapC, N-terminal domain YPA_3095 IPR025949 PapC-like, C-terminal domain YPA_3095 IPR037224 YPA_3095 YPA_3096 IPR002686 Transposase IS200-like YPA_3096 IPR036515 YPA_3096 YPA_3097 IPR000045 Prepilin type IV endopeptidase, peptidase domain YPA_3099 IPR032789 YPA_3099 YPA_3100 IPR004846 Type II/III secretion system YPA_3101 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPA_3102 IPR001482 Type II secretion system protein E YPA_3102 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPA_3103 IPR018076 Type II secretion system F domain YPA_3104 IPR018076 Type II secretion system F domain YPA_3105 IPR011990 Tetratricopeptide-like helical domain YPA_3106 IPR012495 TadE-like YPA_3107 IPR031582 YPA_3107 YPA_3108 IPR036465 YPA_3108 YPA_3109 IPR003400 Biopolymer transport protein ExbD/TolR YPA_3109 IPR014170 TonB system transport protein ExbD type-1 YPA_3110 IPR002898 MotA/TolQ/ExbB proton channel YPA_3110 IPR014164 TonB-system energizer ExbB type-1 YPA_3111 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme YPA_3111 IPR006233 Cystathionine beta-lyase, bacterial YPA_3111 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 YPA_3111 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 YPA_3111 IPR015424 Pyridoxal phosphate-dependent transferase YPA_3112 IPR032816 YPA_3112 YPA_3113 IPR009057 Homeodomain-like YPA_3113 IPR009594 Transcription regulator HTH, AraC, N-terminal YPA_3113 IPR018060 DNA binding HTH domain, AraC-type YPA_3114 IPR001670 Alcohol dehydrogenase, iron-type YPA_3114 IPR018211 Alcohol dehydrogenase, iron-type, conserved site YPA_3115 IPR018170 Aldo/keto reductase, conserved site YPA_3115 IPR020471 Aldo/keto reductase subgroup YPA_3115 IPR023210 NADP-dependent oxidoreductase domain YPA_3115 IPR036812 YPA_3115 YPA_3116 IPR024560 Uncharacterised protein family UPF0313, C-terminal YPA_3117 IPR007197 Radical SAM YPA_3117 IPR013704 Uncharacterised protein family UPF0313, N-terminal YPA_3117 IPR020612 Methylthiotransferase, conserved site YPA_3117 IPR022946 Uncharacterised protein family UPF0313 YPA_3117 IPR023404 Radical SAM, alpha/beta horseshoe YPA_3118 IPR008972 Cupredoxin YPA_3118 IPR011706 Multicopper oxidase, type 2 YPA_3118 IPR011707 Multicopper oxidase, type 3 YPA_3118 IPR026589 Cell division protein FtsP YPA_3119 IPR002123 Phospholipid/glycerol acyltransferase YPA_3119 IPR004552 1-acyl-sn-glycerol-3-phosphate acyltransferase YPA_3120 IPR002205 DNA topoisomerase, type IIA, subunit A/C-terminal YPA_3120 IPR005742 DNA topoisomerase IV, subunit A, Gram-negative YPA_3120 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal beta-pinwheel YPA_3120 IPR013757 Type IIA DNA topoisomerase subunit A, alpha-helical domain YPA_3120 IPR013758 DNA topoisomerase, type IIA, subunit A/ C-terminal, alpha-beta YPA_3120 IPR013760 DNA topoisomerase, type IIA-like domain YPA_3120 IPR035516 YPA_3120 YPA_3121 IPR003680 Flavodoxin-like fold YPA_3121 IPR029039 Flavoprotein-like YPA_3122 IPR000847 Transcription regulator HTH, LysR YPA_3122 IPR005119 LysR, substrate-binding YPA_3122 IPR036388 YPA_3122 YPA_3122 IPR036390 YPA_3122 YPA_3123 IPR001241 DNA topoisomerase, type IIA YPA_3123 IPR002288 DNA gyrase B subunit, C-terminal YPA_3123 IPR003594 Histidine kinase-like ATPase, C-terminal domain YPA_3123 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative YPA_3123 IPR006171 Toprim domain YPA_3123 IPR013506 DNA topoisomerase, type IIA, subunit B, domain 2 YPA_3123 IPR013759 DNA topoisomerase, type IIA, central domain YPA_3123 IPR013760 DNA topoisomerase, type IIA-like domain YPA_3123 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup YPA_3123 IPR018522 DNA topoisomerase, type IIA, conserved site YPA_3123 IPR020568 Ribosomal protein S5 domain 2-type fold YPA_3123 IPR036890 YPA_3123 YPA_3124 IPR008886 Uncharacterised protein family UPF0227/Esterase YqiA YPA_3124 IPR029058 Alpha/Beta hydrolase fold YPA_3125 IPR004843 Calcineurin-like phosphoesterase domain, apaH type YPA_3125 IPR013622 Calcineurin-like phosphoesterase C-terminal YPA_3125 IPR029052 Metallo-dependent phosphatase-like YPA_3126 IPR004843 Calcineurin-like phosphoesterase domain, apaH type YPA_3126 IPR029052 Metallo-dependent phosphatase-like YPA_3127 IPR009659 Protein of unknown function DUF1249 YPA_3128 IPR000086 NUDIX hydrolase domain YPA_3128 IPR004385 Nucleoside diphosphate pyrophosphatase YPA_3128 IPR015797 NUDIX hydrolase domain-like YPA_3128 IPR020084 NUDIX hydrolase, conserved site YPA_3129 IPR003423 Outer membrane efflux protein YPA_3129 IPR010130 Type I secretion outer membrane protein, TolC YPA_3130 IPR009576 Biofilm formation YgiB YPA_3131 IPR005494 Glutathionylspermidine synthase, pre-ATP-grasp-like domain YPA_3131 IPR016185 Pre-ATP-grasp domain YPA_3132 IPR004183 Extradiol ring-cleavage dioxygenase, class III enzyme, subunit B YPA_3132 IPR014436 Extradiol aromatic ring-opening dioxygenase, DODA type YPA_3133 IPR000422 3,4-dihydroxy-2-butanone 4-phosphate synthase, RibB YPA_3133 IPR017945 DHBP synthase RibB-like alpha/beta domain YPA_3134 IPR007475 Membrane fusogenic activity YPA_3135 IPR002293 Amino acid/polyamine transporter I YPA_3136 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site YPA_3136 IPR004821 Cytidyltransferase-like domain YPA_3136 IPR011611 Carbohydrate kinase PfkB YPA_3136 IPR011913 RfaE bifunctional protein, domain I YPA_3136 IPR011914 RfaE bifunctional protein, domain II YPA_3136 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold YPA_3136 IPR023030 Bifunctional protein HldE YPA_3136 IPR029056 Ribokinase-like YPA_3137 IPR005190 Glutamate-ammonia ligase adenylyltransferase, repeated domain YPA_3137 IPR013546 PII-uridylyltransferase/Glutamine-synthetase adenylyltransferase YPA_3137 IPR023057 Glutamate-ammonia-ligase adenylyltransferase YPA_3138 IPR023577 CYTH-like domain YPA_3138 IPR033469 YPA_3138 YPA_3139 IPR003646 SH3-like domain, bacterial-type YPA_3139 IPR016476 SH3 domain protein YPA_3140 IPR002646 Poly A polymerase, head domain YPA_3140 IPR003607 HD/PDEase domain YPA_3140 IPR006674 HD domain YPA_3140 IPR012006 tRNA nucleotidyltransferase, proteobacteria YPA_3140 IPR032828 YPA_3140 YPA_3141 IPR003824 Undecaprenyl-diphosphatase UppP YPA_3142 IPR006156 Dihydroneopterin aldolase YPA_3142 IPR006157 Dihydroneopterin aldolase/epimerase domain YPA_3143 IPR003811 Glycerol-3-phosphate acyltransferase, PlsY YPA_3144 IPR000905 Gcp-like domain YPA_3144 IPR017860 Peptidase M22, conserved site YPA_3144 IPR017861 Kae1/YgjD family YPA_3144 IPR022450 tRNA N6-adenosine threonylcarbamoyltransferase, TsaD YPA_3145 IPR001911 Ribosomal protein S21 YPA_3145 IPR018278 Ribosomal protein S21, conserved site YPA_3145 IPR038380 YPA_3145 YPA_3146 IPR002694 Zinc finger, CHC2-type YPA_3146 IPR006171 Toprim domain YPA_3146 IPR006295 DNA primase, DnaG YPA_3146 IPR013173 DNA primase DnaG, DnaB-binding domain YPA_3146 IPR013264 DNA primase, catalytic core, N-terminal YPA_3146 IPR016136 DNA helicase DnaB, N-terminal/DNA primase DnaG, C-terminal YPA_3146 IPR019475 DNA primase, DnaB-helicase binding domain YPA_3146 IPR030846 YPA_3146 YPA_3146 IPR036977 YPA_3146 YPA_3146 IPR037068 YPA_3146 YPA_3147 IPR000943 RNA polymerase sigma-70 YPA_3147 IPR007127 RNA polymerase sigma factor 70, region 1.1 YPA_3147 IPR007624 RNA polymerase sigma-70 region 3 YPA_3147 IPR007627 RNA polymerase sigma-70 region 2 YPA_3147 IPR007630 RNA polymerase sigma-70 region 4 YPA_3147 IPR007631 RNA polymerase sigma factor 70, non-essential domain YPA_3147 IPR009042 RNA polymerase sigma-70 region 1.2 YPA_3147 IPR012760 RNA polymerase sigma factor RpoD, C-terminal YPA_3147 IPR013324 RNA polymerase sigma factor, region 3/4 YPA_3147 IPR013325 RNA polymerase sigma factor, region 2 YPA_3147 IPR014284 RNA polymerase sigma-70 like domain YPA_3147 IPR028630 RNA polymerase sigma factor RpoD YPA_3147 IPR036388 YPA_3147 YPA_3150 IPR005335 Terminase small subunit YPA_3150 IPR038713 YPA_3150 YPA_3153 IPR016583 Uncharacterised conserved protein UCP011452, HNH endonuclease domain-type YPA_3154 IPR001270 ClpA/B family YPA_3154 IPR002611 IstB-like ATP-binding protein YPA_3154 IPR003593 AAA+ ATPase domain YPA_3154 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPA_3154 IPR028350 DNA replication protein DnaC/insertion sequence putative ATP-binding protein YPA_3155 IPR001584 Integrase, catalytic core YPA_3155 IPR006120 Resolvase, HTH domain YPA_3155 IPR009057 Homeodomain-like YPA_3155 IPR012337 Ribonuclease H-like domain YPA_3157 IPR003812 Fido domain YPA_3157 IPR036597 YPA_3157 YPA_3158 IPR036597 YPA_3158 YPA_3159 IPR000847 Transcription regulator HTH, LysR YPA_3159 IPR005119 LysR, substrate-binding YPA_3159 IPR036388 YPA_3159 YPA_3159 IPR036390 YPA_3159 YPA_3160 IPR036249 YPA_3160 YPA_3161 IPR011008 Dimeric alpha-beta barrel YPA_3161 IPR014910 Mono-oxygenase, YdhR YPA_3162 IPR006175 YjgF/Yer057p/UK114 family YPA_3162 IPR035959 YPA_3162 YPA_3163 IPR006056 Enamine/imine deaminase YjgF-like YPA_3163 IPR006175 YjgF/Yer057p/UK114 family YPA_3163 IPR019897 YjgF-like protein, conserved site YPA_3163 IPR035959 YPA_3163 YPA_3164 IPR013559 YheO-like YPA_3166 IPR019587 Polyketide cyclase/dehydrase YPA_3166 IPR023393 START-like domain YPA_3167 IPR018461 Na+/H+ antiporter, NhaC-like YPA_3168 IPR004838 Aminotransferases, class-I, pyridoxal-phosphate-binding site YPA_3168 IPR004839 Aminotransferase, class I/classII YPA_3168 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 YPA_3168 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 YPA_3168 IPR015424 Pyridoxal phosphate-dependent transferase YPA_3170 IPR031381 YPA_3170 YPA_3171 IPR039562 YPA_3171 YPA_3172 IPR006726 Para-hydroxybenzoic acid efflux pump subunit AaeB/fusaric acid resistance protein YPA_3173 IPR003423 Outer membrane efflux protein YPA_3173 IPR028351 Cyclolysin transport protein CyaE YPA_3174 IPR001764 Glycoside hydrolase, family 3, N-terminal YPA_3174 IPR002772 Glycoside hydrolase family 3 C-terminal domain YPA_3174 IPR013783 Immunoglobulin-like fold YPA_3174 IPR017853 Glycoside hydrolase, superfamily YPA_3174 IPR026891 Fibronectin type III-like domain YPA_3174 IPR036881 YPA_3174 YPA_3174 IPR036962 YPA_3174 YPA_3176 IPR000515 MetI-like domain YPA_3176 IPR035906 YPA_3176 YPA_3177 IPR000515 MetI-like domain YPA_3177 IPR035906 YPA_3177 YPA_3178 IPR006059 Bacterial extracellular solute-binding, family 1 YPA_3179 IPR000843 Transcription regulator HTH, LacI YPA_3179 IPR010982 Lambda repressor-like, DNA-binding domain YPA_3179 IPR028082 Periplasmic binding protein-like I YPA_3180 IPR008928 Six-hairpin glycosidase-like YPA_3180 IPR012341 Six-hairpin glycosidase YPA_3181 IPR003439 ABC transporter-like YPA_3181 IPR003593 AAA+ ATPase domain YPA_3181 IPR008995 Molybdate/tungstate binding, C-terminal YPA_3181 IPR013611 Transport-associated OB, type 2 YPA_3181 IPR017871 ABC transporter, conserved site YPA_3181 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPA_3182 IPR019282 Domain of unknown function DUF2329 YPA_3183 IPR025737 MetA-pathway of phenol degradation, putative YPA_3184 IPR005546 Autotransporter beta-domain YPA_3184 IPR036709 YPA_3184 YPA_3187 IPR028952 Immunity protein 38 YPA_3189 IPR025157 Haemagluttinin repeat YPA_3190 IPR006914 VENN motif-containing domain YPA_3190 IPR008638 Filamentous haemagglutinin, N-terminal YPA_3190 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat YPA_3190 IPR011050 Pectin lyase fold/virulence factor YPA_3190 IPR012334 Pectin lyase fold YPA_3190 IPR024973 ESPR domain YPA_3190 IPR025157 Haemagluttinin repeat YPA_3191 IPR005565 Haemolysin activator HlyB YPA_3191 IPR013686 Polypeptide-transport-associated, ShlB-type YPA_3191 IPR027282 Two partner secretion pathway transporter YPA_3191 IPR035251 YPA_3191 YPA_3192 IPR002035 von Willebrand factor, type A YPA_3192 IPR011392 Tellurite resistance, TerY YPA_3192 IPR036465 YPA_3192 YPA_3193 IPR003325 TerD domain YPA_3194 IPR002035 von Willebrand factor, type A YPA_3194 IPR011392 Tellurite resistance, TerY YPA_3194 IPR036465 YPA_3194 YPA_3195 IPR002035 von Willebrand factor, type A YPA_3195 IPR028274 TerY-C metal binding domain YPA_3195 IPR036465 YPA_3195 YPA_3196 IPR036457 YPA_3196 YPA_3197 IPR000719 Protein kinase domain YPA_3197 IPR008266 Tyrosine-protein kinase, active site YPA_3197 IPR011009 Protein kinase-like domain YPA_3198 IPR005325 Protein of unknown function DUF308, membrane YPA_3199 IPR001155 NADH:flavin oxidoreductase/NADH oxidase, N-terminal YPA_3199 IPR013785 Aldolase-type TIM barrel YPA_3199 IPR023753 Pyridine nucleotide-disulphide oxidoreductase, FAD/NAD(P)-binding domain YPA_3199 IPR036188 YPA_3199 YPA_3200 IPR002052 DNA methylase, N-6 adenine-specific, conserved site YPA_3200 IPR007848 Methyltransferase small domain YPA_3200 IPR017237 rRNA (guanine-N2-)-methyltransferase, RsmD YPA_3200 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase-like YPA_3201 IPR004899 Pertactin, central region YPA_3201 IPR005546 Autotransporter beta-domain YPA_3201 IPR006315 Outer membrane autotransporter barrel YPA_3201 IPR011050 Pectin lyase fold/virulence factor YPA_3201 IPR012332 P22 tailspike C-terminal domain-like YPA_3201 IPR036709 YPA_3201 YPA_3202 IPR002725 Protein of unknown function DUF45 YPA_3203 IPR000683 Oxidoreductase, N-terminal YPA_3203 IPR036291 YPA_3203 YPA_3204 IPR001991 Sodium:dicarboxylate symporter YPA_3204 IPR023025 Serine/threonine transporter SstT YPA_3204 IPR036458 YPA_3204 YPA_3205 IPR002686 Transposase IS200-like YPA_3205 IPR036515 YPA_3205 YPA_3206 IPR019629 Uncharacterised protein family HI1736/YgjV YPA_3206 IPR026267 Inner membrane protein YgjV YPA_3207 IPR007392 D-galactarate dehydratase/Altronate hydrolase, C-terminal YPA_3207 IPR013974 SAF domain YPA_3208 IPR008927 6-phosphogluconate dehydrogenase, C-terminal-like YPA_3208 IPR013118 Mannitol dehydrogenase, C-terminal YPA_3208 IPR013328 Dehydrogenase, multihelical YPA_3208 IPR036291 YPA_3208 YPA_3209 IPR013131 Mannitol dehydrogenase, N-terminal YPA_3209 IPR036291 YPA_3209 YPA_3210 IPR003766 Uronate isomerase YPA_3210 IPR032466 YPA_3210 YPA_3211 IPR000849 Sugar phosphate transporter YPA_3211 IPR011701 Major facilitator superfamily YPA_3211 IPR036259 YPA_3211 YPA_3212 IPR000524 Transcription regulator HTH, GntR YPA_3212 IPR008920 Transcription regulator FadR/GntR, C-terminal YPA_3212 IPR011711 GntR, C-terminal YPA_3212 IPR036388 YPA_3212 YPA_3212 IPR036390 YPA_3212 YPA_3214 IPR032816 YPA_3214 YPA_3215 IPR026574 Modulator protein MzrA YPA_3215 IPR027398 SecD export protein N-terminal TM domain YPA_3216 IPR009468 Protein of unknown function DUF1090 YPA_3218 IPR010279 Protein of unknown function DUF883, ElaB YPA_3219 IPR009937 Protein of unknown function DUF1469 YPA_3220 IPR025612 YqjK-like protein YPA_3221 IPR032808 YPA_3221 YPA_3223 IPR001584 Integrase, catalytic core YPA_3223 IPR006120 Resolvase, HTH domain YPA_3223 IPR009057 Homeodomain-like YPA_3223 IPR012337 Ribonuclease H-like domain YPA_3224 IPR001270 ClpA/B family YPA_3224 IPR002611 IstB-like ATP-binding protein YPA_3224 IPR003593 AAA+ ATPase domain YPA_3224 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPA_3224 IPR028350 DNA replication protein DnaC/insertion sequence putative ATP-binding protein YPA_3225 IPR001451 Bacterial transferase hexapeptide repeat YPA_3225 IPR011004 Trimeric LpxA-like YPA_3226 IPR006151 Quinate/shikimate 5-dehydrogenase/glutamyl-tRNA reductase YPA_3226 IPR011342 Shikimate dehydrogenase YPA_3226 IPR013708 Shikimate dehydrogenase substrate binding, N-terminal YPA_3226 IPR022893 Shikimate, quinate/shikimate dehydrogenase YPA_3226 IPR036291 YPA_3226 YPA_3227 IPR006070 YrdC-like domain YPA_3227 IPR017945 DHBP synthase RibB-like alpha/beta domain YPA_3227 IPR023535 Threonylcarbamoyl-AMP synthase YPA_3228 IPR013498 DNA topoisomerase, type IA, zn finger YPA_3229 IPR007456 Protein of unknown function DUF494 YPA_3230 IPR003488 DNA recombination-mediator protein A YPA_3231 IPR023635 Peptide deformylase YPA_3231 IPR036821 YPA_3231 YPA_3232 IPR001555 Phosphoribosylglycinamide formyltransferase, active site YPA_3232 IPR002376 Formyl transferase, N-terminal YPA_3232 IPR005793 Formyl transferase, C-terminal YPA_3232 IPR005794 Methionyl-tRNA formyltransferase YPA_3232 IPR011034 Formyl transferase, C-terminal-like YPA_3232 IPR036477 YPA_3232 YPA_3232 IPR037022 YPA_3232 YPA_3233 IPR001678 Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p YPA_3233 IPR004573 rRNA small subunit methyltransferase B YPA_3233 IPR006027 NusB/RsmB/TIM44 YPA_3233 IPR018314 Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p, conserved site YPA_3233 IPR023267 RNA (C5-cytosine) methyltransferase YPA_3233 IPR023541 rRNA small subunit methyltransferase B, enterobacteriaceae YPA_3233 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase-like YPA_3233 IPR035926 YPA_3233 YPA_3234 IPR003148 Regulator of K+ conductance, N-terminal YPA_3234 IPR006036 Potassium uptake protein TrkA YPA_3234 IPR006037 Regulator of K+ conductance, C-terminal YPA_3234 IPR036291 YPA_3234 YPA_3234 IPR036721 YPA_3234 YPA_3235 IPR001185 Large-conductance mechanosensitive channel YPA_3235 IPR019823 Large-conductance mechanosensitive channel, conserved site YPA_3235 IPR036019 YPA_3235 YPA_3235 IPR037673 YPA_3235 YPA_3236 IPR005589 Protein of unknown function DUF331 YPA_3237 IPR000551 MerR-type HTH domain YPA_3237 IPR009061 DNA binding domain, putative YPA_3237 IPR011788 Zn(II)-responsive transcriptional regulator YPA_3238 IPR000456 Ribosomal protein L17 YPA_3238 IPR036373 YPA_3238 YPA_3239 IPR011260 RNA polymerase, alpha subunit, C-terminal YPA_3239 IPR011262 DNA-directed RNA polymerase, insert domain YPA_3239 IPR011263 DNA-directed RNA polymerase, RpoA/D/Rpb3-type YPA_3239 IPR011773 DNA-directed RNA polymerase, alpha subunit YPA_3239 IPR036603 YPA_3239 YPA_3239 IPR036643 YPA_3239 YPA_3240 IPR001912 Ribosomal protein S4/S9, N-terminal YPA_3240 IPR002942 RNA-binding S4 domain YPA_3240 IPR005709 Ribosomal protein S4, bacterial-type YPA_3240 IPR018079 Ribosomal protein S4, conserved site YPA_3240 IPR036986 YPA_3240 YPA_3241 IPR001971 Ribosomal protein S11 YPA_3241 IPR018102 Ribosomal S11, conserved site YPA_3241 IPR019981 Ribosomal protein S11, bacterial-type YPA_3241 IPR036967 YPA_3241 YPA_3242 IPR001892 Ribosomal protein S13 YPA_3242 IPR010979 Ribosomal protein S13-like, H2TH YPA_3242 IPR018269 Ribosomal protein S13, conserved site YPA_3242 IPR019980 Ribosomal protein S13, bacterial-type YPA_3242 IPR027437 30s ribosomal protein S13, C-terminal YPA_3243 IPR002208 SecY/SEC61-alpha family YPA_3243 IPR023201 SecY subunit domain YPA_3243 IPR026593 Protein translocase subunit SecY YPA_3243 IPR030659 YPA_3243 YPA_3244 IPR001196 Ribosomal protein L15, conserved site YPA_3244 IPR005749 Ribosomal protein L15, bacterial-type YPA_3244 IPR021131 Ribosomal protein L18e/L15P YPA_3244 IPR030878 YPA_3244 YPA_3244 IPR036227 YPA_3244 YPA_3245 IPR005996 Ribosomal protein L30, bacterial-type YPA_3245 IPR016082 Ribosomal protein L30, ferredoxin-like fold domain YPA_3245 IPR018038 Ribosomal protein L30, conserved site YPA_3245 IPR036919 YPA_3245 YPA_3246 IPR005324 Ribosomal protein S5, C-terminal YPA_3246 IPR005712 Ribosomal protein S5, bacterial-type YPA_3246 IPR013810 Ribosomal protein S5, N-terminal YPA_3246 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup YPA_3246 IPR018192 Ribosomal protein S5, N-terminal, conserved site YPA_3246 IPR020568 Ribosomal protein S5 domain 2-type fold YPA_3247 IPR004389 Ribosomal protein L18, bacterial-type YPA_3247 IPR005484 Ribosomal protein L18/L5 YPA_3248 IPR000702 Ribosomal protein L6 YPA_3248 IPR002358 Ribosomal protein L6, conserved site YPA_3248 IPR019906 Ribosomal protein L6, bacterial-type YPA_3248 IPR020040 Ribosomal protein L6, alpha-beta domain YPA_3248 IPR036789 YPA_3248 YPA_3249 IPR000630 Ribosomal protein S8 YPA_3249 IPR035987 YPA_3249 YPA_3250 IPR001209 Ribosomal protein S14 YPA_3250 IPR018271 Ribosomal protein S14, conserved site YPA_3250 IPR023036 Ribosomal protein S14, bacterial/plastid YPA_3251 IPR002132 Ribosomal protein L5 YPA_3251 IPR020930 Ribosomal protein L5, bacterial-type YPA_3251 IPR022803 Ribosomal protein L5 domain YPA_3251 IPR031309 YPA_3251 YPA_3251 IPR031310 YPA_3251 YPA_3252 IPR003256 Ribosomal protein L24 YPA_3252 IPR005824 KOW YPA_3252 IPR005825 Ribosomal protein L24/L26, conserved site YPA_3252 IPR008991 Translation protein SH3-like domain YPA_3252 IPR014722 Ribosomal protein L2 domain 2 YPA_3253 IPR000218 Ribosomal protein L14b/L23e YPA_3253 IPR005745 Ribosomal protein L14, bacterial-type YPA_3253 IPR019972 Ribosomal protein L14 conserved site YPA_3253 IPR036853 YPA_3253 YPA_3254 IPR000266 Ribosomal protein S17 YPA_3254 IPR012340 Nucleic acid-binding, OB-fold YPA_3254 IPR019979 Ribosomal protein S17, conserved site YPA_3254 IPR019984 Ribosomal protein S17, bacterial-type YPA_3255 IPR001854 Ribosomal protein L29 YPA_3255 IPR018254 Ribosomal protein L29, conserved site YPA_3255 IPR036049 YPA_3255 YPA_3256 IPR000114 Ribosomal protein L16 YPA_3256 IPR016180 Ribosomal protein L10e/L16 YPA_3256 IPR020798 Ribosomal protein L16, conserved site YPA_3256 IPR036920 YPA_3256 YPA_3257 IPR001351 Ribosomal protein S3, C-terminal YPA_3257 IPR004044 K Homology domain, type 2 YPA_3257 IPR004087 K Homology domain YPA_3257 IPR005704 Ribosomal protein S3, bacterial YPA_3257 IPR009019 K homology domain, prokaryotic type YPA_3257 IPR015946 K homology domain-like, alpha/beta YPA_3257 IPR018280 Ribosomal protein S3, conserved site YPA_3257 IPR036419 YPA_3257 YPA_3258 IPR001063 Ribosomal protein L22/L17 YPA_3258 IPR005727 Ribosomal protein L22, bacterial/chloroplast-type YPA_3258 IPR018260 Ribosomal protein L22/L17, conserved site YPA_3258 IPR036394 YPA_3258 YPA_3259 IPR002222 Ribosomal protein S19/S15 YPA_3259 IPR005732 Ribosomal protein S19, bacterial-type YPA_3259 IPR020934 Ribosomal protein S19 conserved site YPA_3259 IPR023575 Ribosomal protein S19, superfamily YPA_3260 IPR002171 Ribosomal protein L2 YPA_3260 IPR005880 Ribosomal protein L2, bacterial/organellar-type YPA_3260 IPR008991 Translation protein SH3-like domain YPA_3260 IPR012340 Nucleic acid-binding, OB-fold YPA_3260 IPR014722 Ribosomal protein L2 domain 2 YPA_3260 IPR014726 Ribosomal protein L2, domain 3 YPA_3260 IPR022666 Ribosomal Proteins L2, RNA binding domain YPA_3260 IPR022669 Ribosomal protein L2, C-terminal YPA_3260 IPR022671 Ribosomal protein L2, conserved site YPA_3261 IPR001014 Ribosomal protein L23/L25, conserved site YPA_3261 IPR012677 Nucleotide-binding, alpha-beta plait YPA_3261 IPR012678 Ribosomal protein L23/L15e core domain YPA_3261 IPR013025 Ribosomal protein L25/L23 YPA_3262 IPR002136 Ribosomal protein L4/L1e YPA_3262 IPR013005 Ribosomal protein L4/L1e, bacterial-type YPA_3262 IPR023574 Ribosomal protein L4 domain YPA_3263 IPR000597 Ribosomal protein L3 YPA_3263 IPR009000 Translation protein, beta-barrel domain YPA_3263 IPR019926 Ribosomal protein L3, conserved site YPA_3263 IPR019927 Ribosomal protein L3, bacterial/organelle-type YPA_3264 IPR001848 Ribosomal protein S10 YPA_3264 IPR018268 Ribosomal protein S10, conserved site YPA_3264 IPR027486 Ribosomal protein S10 domain YPA_3264 IPR036838 YPA_3264 YPA_3265 IPR002024 Bacterioferritin YPA_3265 IPR008331 Ferritin/DPS protein domain YPA_3265 IPR009078 Ferritin-like superfamily YPA_3265 IPR012347 Ferritin-related YPA_3266 IPR001584 Integrase, catalytic core YPA_3266 IPR006120 Resolvase, HTH domain YPA_3266 IPR009057 Homeodomain-like YPA_3266 IPR012337 Ribonuclease H-like domain YPA_3267 IPR001270 ClpA/B family YPA_3267 IPR002611 IstB-like ATP-binding protein YPA_3267 IPR003593 AAA+ ATPase domain YPA_3267 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPA_3267 IPR028350 DNA replication protein DnaC/insertion sequence putative ATP-binding protein YPA_3268 IPR002686 Transposase IS200-like YPA_3268 IPR036515 YPA_3268 YPA_3269 IPR000795 Elongation factor, GTP-binding domain YPA_3269 IPR004160 Translation elongation factor EFTu/EF1A, C-terminal YPA_3269 IPR004161 Translation elongation factor EFTu/EF1A, domain 2 YPA_3269 IPR004541 Translation elongation factor EFTu/EF1A, bacterial/organelle YPA_3269 IPR005225 Small GTP-binding protein domain YPA_3269 IPR009000 Translation protein, beta-barrel domain YPA_3269 IPR009001 Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal YPA_3269 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPA_3269 IPR031157 YPA_3269 YPA_3270 IPR000640 Translation elongation factor EFG, V domain YPA_3270 IPR000795 Elongation factor, GTP-binding domain YPA_3270 IPR004161 Translation elongation factor EFTu/EF1A, domain 2 YPA_3270 IPR004540 Translation elongation factor EFG/EF2 YPA_3270 IPR005225 Small GTP-binding protein domain YPA_3270 IPR005517 Translation elongation factor EFG/EF2, domain IV YPA_3270 IPR009000 Translation protein, beta-barrel domain YPA_3270 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup YPA_3270 IPR020568 Ribosomal protein S5 domain 2-type fold YPA_3270 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPA_3270 IPR031157 YPA_3270 YPA_3270 IPR035647 YPA_3270 YPA_3271 IPR000235 Ribosomal protein S5/S7 YPA_3271 IPR005717 Ribosomal protein S7, bacterial/organellar-type YPA_3271 IPR020606 Ribosomal protein S7, conserved site YPA_3271 IPR023798 Ribosomal protein S7 domain YPA_3271 IPR036823 YPA_3271 YPA_3272 IPR005679 Ribosomal protein S12, bacteria YPA_3272 IPR006032 Ribosomal protein S12/S23 YPA_3272 IPR012340 Nucleic acid-binding, OB-fold YPA_3273 IPR007215 Sulphur relay, TusB/DsrH YPA_3273 IPR023526 Sulphur relay, TusB YPA_3273 IPR027396 DsrEFH-like YPA_3274 IPR003787 Sulphur relay, DsrE/F-like protein YPA_3274 IPR017462 Sulphur relay, TusC/DsrF YPA_3274 IPR027396 DsrEFH-like YPA_3274 IPR037450 YPA_3274 YPA_3275 IPR003787 Sulphur relay, DsrE/F-like protein YPA_3275 IPR017463 Sulphur relay, TusD/DsrE YPA_3275 IPR027396 DsrEFH-like YPA_3276 IPR013559 YheO-like YPA_3276 IPR039445 YPA_3276 YPA_3277 IPR000774 Peptidyl-prolyl cis-trans isomerase, FKBP-type, N-terminal YPA_3277 IPR001179 Peptidyl-prolyl cis-trans isomerase, FKBP-type, domain YPA_3277 IPR036944 YPA_3277 YPA_3278 IPR007236 SlyX YPA_3279 IPR001179 Peptidyl-prolyl cis-trans isomerase, FKBP-type, domain YPA_3280 IPR012658 Conserved hypothetical protein CHP02443 YPA_3281 IPR003148 Regulator of K+ conductance, N-terminal YPA_3281 IPR004771 K+/H+ exchanger YPA_3281 IPR006153 Cation/H+ exchanger YPA_3281 IPR020884 Glutathione-regulated potassium-efflux system protein KefB YPA_3281 IPR036291 YPA_3281 YPA_3281 IPR038770 YPA_3281 YPA_3282 IPR003680 Flavodoxin-like fold YPA_3282 IPR023947 Glutathione-regulated potassium-efflux system ancillary protein KefG YPA_3282 IPR029039 Flavoprotein-like YPA_3283 IPR003439 ABC transporter-like YPA_3283 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPA_3284 IPR003439 ABC transporter-like YPA_3284 IPR003593 AAA+ ATPase domain YPA_3284 IPR017871 ABC transporter, conserved site YPA_3284 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPA_3284 IPR032781 YPA_3284 YPA_3285 IPR001173 Glycosyltransferase 2-like YPA_3285 IPR029044 Nucleotide-diphospho-sugar transferases YPA_3286 IPR002201 Glycosyl transferase, family 9 YPA_3287 IPR003819 Taurine catabolism dioxygenase TauD/TfdA YPA_3288 IPR000515 MetI-like domain YPA_3288 IPR035906 YPA_3288 YPA_3289 IPR003439 ABC transporter-like YPA_3289 IPR003593 AAA+ ATPase domain YPA_3289 IPR017871 ABC transporter, conserved site YPA_3289 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPA_3290 IPR001638 Extracellular solute-binding protein, family 3 YPA_3290 IPR007210 ABC-type glycine betaine transport system, substrate-binding domain YPA_3290 IPR010068 Taurine ABC transporter, periplasmic binding protein TauA YPA_3291 IPR001123 Lysine-type exporter protein (LYSE/YGGA) YPA_3292 IPR000073 Alpha/beta hydrolase fold-1 YPA_3292 IPR000952 Uncharacterised protein family UPF0017, hydrolase-like, conserved site YPA_3292 IPR012020 AB-hydrolase YheT, putative YPA_3292 IPR029058 Alpha/Beta hydrolase fold YPA_3293 IPR010648 Uncharacterised protein family UPF0270 YPA_3293 IPR036685 YPA_3293 YPA_3294 IPR006082 Phosphoribulokinase YPA_3294 IPR006083 Phosphoribulokinase/uridine kinase YPA_3294 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPA_3295 IPR010665 Protein of unknown function DUF1240 YPA_3296 IPR003718 OsmC/Ohr family YPA_3296 IPR015946 K homology domain-like, alpha/beta YPA_3296 IPR036102 YPA_3296 YPA_3297 IPR000595 Cyclic nucleotide-binding domain YPA_3297 IPR012318 Helix-turn-helix motif, Crp-type YPA_3297 IPR014710 RmlC-like jelly roll fold YPA_3297 IPR018335 Transcription regulator HTH, Crp-type, conserved site YPA_3297 IPR018488 Cyclic nucleotide-binding, conserved site YPA_3297 IPR018490 Cyclic nucleotide-binding-like YPA_3297 IPR036388 YPA_3297 YPA_3297 IPR036390 YPA_3297 YPA_3298 IPR010020 Integral membrane protein, YccS/YhfK YPA_3298 IPR032692 YPA_3298 YPA_3299 IPR004636 Acetylornithine/Succinylornithine transaminase family YPA_3299 IPR005814 Aminotransferase class-III YPA_3299 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 YPA_3299 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 YPA_3299 IPR015424 Pyridoxal phosphate-dependent transferase YPA_3299 IPR017652 Acetyl/Succinylornithine transaminase family, bacteria YPA_3300 IPR006221 Anthranilate synthase/para-aminobenzoate synthase like domain YPA_3300 IPR017926 Glutamine amidotransferase YPA_3300 IPR029062 Class I glutamine amidotransferase-like YPA_3301 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPA_3301 IPR033186 YPA_3301 YPA_3302 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain YPA_3302 IPR020892 Cyclophilin-type peptidyl-prolyl cis-trans isomerase, conserved site YPA_3302 IPR024936 Cyclophilin-type peptidyl-prolyl cis-trans isomerase YPA_3302 IPR029000 Cyclophilin-like domain YPA_3303 IPR001088 Glycoside hydrolase, family 4 YPA_3303 IPR015955 Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal YPA_3303 IPR019802 Glycoside hydrolase, family 4, conserved site YPA_3303 IPR022616 Glycosyl hydrolase, family 4, C-terminal YPA_3303 IPR036291 YPA_3303 YPA_3304 IPR000843 Transcription regulator HTH, LacI YPA_3304 IPR010982 Lambda repressor-like, DNA-binding domain YPA_3304 IPR028082 Periplasmic binding protein-like I YPA_3305 IPR000531 TonB-dependent receptor, beta-barrel YPA_3305 IPR010100 TonB-dependent copper receptor YPA_3305 IPR012910 TonB-dependent receptor, plug YPA_3305 IPR036942 YPA_3305 YPA_3305 IPR037066 YPA_3305 YPA_3306 IPR011701 Major facilitator superfamily YPA_3306 IPR023528 Major facilitator superfamily transporter, TsgA YPA_3306 IPR036259 YPA_3306 YPA_3307 IPR011059 Metal-dependent hydrolase, composite domain YPA_3307 IPR013108 Amidohydrolase 3 YPA_3307 IPR032466 YPA_3307 YPA_3308 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain YPA_3308 IPR006066 Nitrite/sulphite reductase iron-sulphur/siroheam-binding site YPA_3308 IPR006067 Nitrite/sulphite reductase 4Fe-4S domain YPA_3308 IPR007419 BFD-like [2Fe-2S]-binding domain YPA_3308 IPR012744 Nitrite reductase [NAD(P)H] large subunit, NirB YPA_3308 IPR017121 Nitrite reductase [NAD(P)H], large subunit YPA_3308 IPR023753 Pyridine nucleotide-disulphide oxidoreductase, FAD/NAD(P)-binding domain YPA_3308 IPR036136 YPA_3308 YPA_3308 IPR036188 YPA_3308 YPA_3309 IPR012748 Nitrite reductase [NAD(P)H] small subunit, NirD YPA_3309 IPR036922 YPA_3309 YPA_3310 IPR000292 Formate/nitrite transporter YPA_3310 IPR023271 Aquaporin-like YPA_3310 IPR024002 Formate/nitrite transporter, conserved site YPA_3311 IPR000878 Tetrapyrrole methylase YPA_3311 IPR003043 Uroporphiryn-III C-methyltransferase, conserved site YPA_3311 IPR006366 Uroporphyrin-III C-methyltransferase YPA_3311 IPR006367 Sirohaem synthase, N-terminal YPA_3311 IPR012409 Sirohaem synthase YPA_3311 IPR014776 Tetrapyrrole methylase, subdomain 2 YPA_3311 IPR014777 Tetrapyrrole methylase, subdomain 1 YPA_3311 IPR019478 Sirohaem synthase, dimerisation domain YPA_3311 IPR028281 Siroheme synthase, central domain YPA_3311 IPR035996 YPA_3311 YPA_3311 IPR036291 YPA_3311 YPA_3311 IPR037115 YPA_3311 YPA_3312 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site YPA_3312 IPR002305 Aminoacyl-tRNA synthetase, class Ic YPA_3312 IPR002306 Tryptophan-tRNA ligase YPA_3312 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold YPA_3312 IPR024109 Tryptophan-tRNA ligase, bacterial-type YPA_3313 IPR006346 2-phosphoglycolate phosphatase, prokaryotic YPA_3313 IPR006439 HAD hydrolase, subfamily IA YPA_3313 IPR023198 Phosphoglycolate phosphatase, domain 2 YPA_3313 IPR023214 HAD-like domain YPA_3313 IPR036412 YPA_3313 YPA_3313 IPR037512 YPA_3313 YPA_3314 IPR000056 Ribulose-phosphate 3-epimerase-like YPA_3314 IPR011060 Ribulose-phosphate binding barrel YPA_3314 IPR013785 Aldolase-type TIM barrel YPA_3314 IPR026019 Ribulose-phosphate 3-epimerase YPA_3315 IPR002052 DNA methylase, N-6 adenine-specific, conserved site YPA_3315 IPR012263 Adenine modification methylase, M.EcoRV-type YPA_3315 IPR012327 D12 class N6 adenine-specific DNA methyltransferase YPA_3315 IPR023095 Adenine-specific methyltransferase, domain 2 YPA_3315 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase-like YPA_3316 IPR007730 Sporulation-related domain YPA_3316 IPR032899 YPA_3316 YPA_3316 IPR036680 YPA_3316 YPA_3317 IPR016037 3-dehydroquinate synthase AroB YPA_3317 IPR030960 YPA_3317 YPA_3317 IPR030963 YPA_3317 YPA_3318 IPR000623 Shikimate kinase/Threonine synthase-like 1 YPA_3318 IPR023000 Shikimate kinase, conserved site YPA_3318 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPA_3318 IPR031322 YPA_3318 YPA_3319 IPR001775 GspD/PilQ family YPA_3319 IPR004846 Type II/III secretion system YPA_3319 IPR005644 NolW-like YPA_3319 IPR013355 Type IV pilus secretin PilQ YPA_3319 IPR038591 YPA_3319 YPA_3321 IPR019684 Protein of unknown function DUF2531 YPA_3323 IPR007813 Fimbrial assembly PilN YPA_3324 IPR005883 Type IV pilus assembly protein PilM YPA_3325 IPR001264 Glycosyl transferase, family 51 YPA_3325 IPR001460 Penicillin-binding protein, transpeptidase YPA_3325 IPR012338 Beta-lactamase/transpeptidase-like YPA_3325 IPR023346 Lysozyme-like domain YPA_3325 IPR031376 YPA_3325 YPA_3325 IPR036950 YPA_3325 YPA_3326 IPR000086 NUDIX hydrolase domain YPA_3326 IPR015797 NUDIX hydrolase domain-like YPA_3326 IPR020084 NUDIX hydrolase, conserved site YPA_3327 IPR010771 Intracellular growth attenuator IgaA YPA_3328 IPR006439 HAD hydrolase, subfamily IA YPA_3328 IPR023214 HAD-like domain YPA_3328 IPR036412 YPA_3328 YPA_3329 IPR002942 RNA-binding S4 domain YPA_3329 IPR025708 Heat shock protein 15 YPA_3329 IPR036986 YPA_3329 YPA_3330 IPR000397 Heat shock protein Hsp33 YPA_3330 IPR016153 Heat shock protein Hsp33, N-terminal YPA_3330 IPR016154 Heat shock protein Hsp33, C-terminal YPA_3330 IPR023212 Heat shock protein Hsp33, helix hairpin bin domain YPA_3331 IPR001272 Phosphoenolpyruvate carboxykinase, ATP-utilising YPA_3331 IPR008210 Phosphoenolpyruvate carboxykinase, N-terminal YPA_3331 IPR013035 Phosphoenolpyruvate carboxykinase, C-terminal YPA_3331 IPR015994 Phosphoenolpyruvate carboxykinase (ATP), conserved site YPA_3332 IPR003594 Histidine kinase-like ATPase, C-terminal domain YPA_3332 IPR003660 HAMP linker domain YPA_3332 IPR003661 Signal transduction histidine kinase EnvZ-like, dimerisation/phosphoacceptor domain YPA_3332 IPR004358 Signal transduction histidine kinase-related protein, C-terminal YPA_3332 IPR036097 YPA_3332 YPA_3332 IPR036890 YPA_3332 YPA_3333 IPR001789 Signal transduction response regulator, receiver domain YPA_3333 IPR001867 Signal transduction response regulator, C-terminal YPA_3333 IPR011006 CheY-like superfamily YPA_3333 IPR016032 Signal transduction response regulator, C-terminal effector YPA_3333 IPR036388 YPA_3333 YPA_3334 IPR001437 Transcription elongation factor, GreA/GreB, C-terminal YPA_3334 IPR006358 Transcription elongation factor GreB YPA_3334 IPR018151 Transcription elongation factor, GreA/GreB, conserved site YPA_3334 IPR022691 Transcription elongation factor, GreA/GreB, N-terminal YPA_3334 IPR023459 Transcription elongation factor GreA/GreB family YPA_3334 IPR028624 Transcription elongation factor GreA/GreB YPA_3334 IPR036805 YPA_3334 YPA_3334 IPR036953 YPA_3334 YPA_3335 IPR003029 Ribosomal protein S1, RNA-binding domain YPA_3335 IPR006641 YqgF/RNase H-like domain YPA_3335 IPR010994 RuvA domain 2-like YPA_3335 IPR012337 Ribonuclease H-like domain YPA_3335 IPR012340 Nucleic acid-binding, OB-fold YPA_3335 IPR018974 Tex-like protein, N-terminal YPA_3335 IPR022967 RNA-binding domain, S1 YPA_3335 IPR023319 Tex-like protein, HTH domain YPA_3335 IPR023323 Tex-like domain YPA_3335 IPR032639 YPA_3335 YPA_3335 IPR037027 YPA_3335 YPA_3336 IPR007167 Ferrous iron transporter FeoA domain YPA_3336 IPR008988 Transcriptional repressor, C-terminal YPA_3336 IPR038157 YPA_3336 YPA_3337 IPR003373 Ferrous iron transport protein B YPA_3337 IPR005225 Small GTP-binding protein domain YPA_3337 IPR011640 Ferrous iron transport protein B, C-terminal YPA_3337 IPR011642 Nucleoside recognition Gate YPA_3337 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPA_3337 IPR030389 YPA_3337 YPA_3338 IPR015102 Transcriptional regulator HTH-type, FeoC YPA_3338 IPR023732 Ferrous iron transport protein C YPA_3338 IPR036388 YPA_3338 YPA_3338 IPR036390 YPA_3338 YPA_3339 IPR010854 Domain of unknown function DUF1471 YPA_3339 IPR025543 Dodecin-like YPA_3339 IPR036275 YPA_3339 YPA_3340 IPR000073 Alpha/beta hydrolase fold-1 YPA_3340 IPR010076 Pimelyl-[acyl-carrier protein] methyl ester esterase YPA_3340 IPR029058 Alpha/Beta hydrolase fold YPA_3341 IPR000836 Phosphoribosyltransferase domain YPA_3341 IPR029057 Phosphoribosyltransferase-like YPA_3342 IPR000361 FeS cluster biogenesis YPA_3342 IPR001075 NIF system FeS cluster assembly, NifU, C-terminal YPA_3342 IPR017726 Fe/S biogenesis protein NfuA YPA_3342 IPR034904 YPA_3342 YPA_3342 IPR035903 YPA_3342 YPA_3343 IPR003385 Glycoside hydrolase, family 77 YPA_3343 IPR017853 Glycoside hydrolase, superfamily YPA_3344 IPR000811 Glycosyl transferase, family 35 YPA_3344 IPR011833 Glycogen/starch/alpha-glucan phosphorylase YPA_3344 IPR035090 YPA_3344 YPA_3346 IPR000792 Transcription regulator LuxR, C-terminal YPA_3346 IPR011990 Tetratricopeptide-like helical domain YPA_3346 IPR016032 Signal transduction response regulator, C-terminal effector YPA_3346 IPR023768 Transcriptional regulator HTH-type, MalT YPA_3346 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPA_3346 IPR036388 YPA_3346 YPA_3347 IPR001763 Rhodanese-like domain YPA_3347 IPR023695 Thiosulfate sulfurtransferase, bacterial YPA_3347 IPR036873 YPA_3347 YPA_3348 IPR022732 Peptidase S54, GlpG peptidase, N-terminal YPA_3348 IPR022764 Peptidase S54, rhomboid domain YPA_3348 IPR023662 Rhomboid protease GlpG YPA_3348 IPR035952 YPA_3348 YPA_3348 IPR038236 YPA_3348 YPA_3349 IPR001034 HTH DeoR N-terminal domain YPA_3349 IPR014036 DeoR C-terminal sensor domain YPA_3349 IPR018356 Transcription regulator, HTH DeoR-type, conserved site YPA_3349 IPR036388 YPA_3349 YPA_3349 IPR036390 YPA_3349 YPA_3349 IPR037171 YPA_3349 YPA_3350 IPR009057 Homeodomain-like YPA_3350 IPR010921 Trp repressor/replication initiator YPA_3351 IPR001270 ClpA/B family YPA_3351 IPR002611 IstB-like ATP-binding protein YPA_3351 IPR003593 AAA+ ATPase domain YPA_3351 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPA_3351 IPR028350 DNA replication protein DnaC/insertion sequence putative ATP-binding protein YPA_3352 IPR001584 Integrase, catalytic core YPA_3352 IPR006120 Resolvase, HTH domain YPA_3352 IPR009057 Homeodomain-like YPA_3352 IPR012337 Ribonuclease H-like domain YPA_3353 IPR001584 Integrase, catalytic core YPA_3353 IPR012337 Ribonuclease H-like domain YPA_3353 IPR025948 HTH-like domain YPA_3353 IPR036397 YPA_3353 YPA_3354 IPR000014 PAS domain YPA_3354 IPR000160 GGDEF domain YPA_3354 IPR001633 EAL domain YPA_3354 IPR007892 CHASE4 YPA_3354 IPR013767 PAS fold YPA_3354 IPR029787 Nucleotide cyclase YPA_3354 IPR035919 YPA_3354 YPA_3354 IPR035965 YPA_3354 YPA_3356 IPR006143 RND efflux pump, membrane fusion protein YPA_3356 IPR032317 YPA_3356 YPA_3357 IPR001036 Acriflavin resistance protein YPA_3357 IPR004764 Hydrophobe/amphiphile efflux-1 HAE1 YPA_3357 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains YPA_3358 IPR012927 ShET2 enterotoxin, N-terminal YPA_3360 IPR005546 Autotransporter beta-domain YPA_3360 IPR006315 Outer membrane autotransporter barrel YPA_3360 IPR011050 Pectin lyase fold/virulence factor YPA_3360 IPR012332 P22 tailspike C-terminal domain-like YPA_3360 IPR024973 ESPR domain YPA_3360 IPR036709 YPA_3360 YPA_3361 IPR029487 Novel E3 ligase domain YPA_3361 IPR032674 YPA_3361 YPA_3361 IPR032675 YPA_3361 YPA_3362 IPR032674 YPA_3362 YPA_3362 IPR032675 YPA_3362 YPA_3363 IPR002686 Transposase IS200-like YPA_3363 IPR036515 YPA_3363 YPA_3364 IPR003591 Leucine-rich repeat, typical subtype YPA_3364 IPR029487 Novel E3 ligase domain YPA_3364 IPR032674 YPA_3364 YPA_3364 IPR032675 YPA_3364 YPA_3366 IPR004697 AbgT YPA_3367 IPR001261 ArgE/DapE/ACY1/CPG2/YscS, conserved site YPA_3367 IPR002933 Peptidase M20 YPA_3367 IPR010161 Peptidase M20B, tripeptide aminopeptidase YPA_3367 IPR011650 Peptidase M20, dimerisation domain YPA_3367 IPR036264 YPA_3367 YPA_3368 IPR000531 TonB-dependent receptor, beta-barrel YPA_3368 IPR012910 TonB-dependent receptor, plug YPA_3368 IPR036942 YPA_3368 YPA_3369 IPR000873 AMP-dependent synthetase/ligase YPA_3369 IPR009081 Acyl carrier protein-like YPA_3369 IPR014030 Beta-ketoacyl synthase, N-terminal YPA_3369 IPR014031 Beta-ketoacyl synthase, C-terminal YPA_3369 IPR016039 Thiolase-like YPA_3369 IPR018201 Beta-ketoacyl synthase, active site YPA_3369 IPR020806 Polyketide synthase, phosphopantetheine-binding domain YPA_3369 IPR020841 Polyketide synthase, beta-ketoacyl synthase domain YPA_3369 IPR036736 YPA_3369 YPA_3370 IPR001584 Integrase, catalytic core YPA_3370 IPR006120 Resolvase, HTH domain YPA_3370 IPR009057 Homeodomain-like YPA_3370 IPR012337 Ribonuclease H-like domain YPA_3371 IPR001270 ClpA/B family YPA_3371 IPR002611 IstB-like ATP-binding protein YPA_3371 IPR003593 AAA+ ATPase domain YPA_3371 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPA_3371 IPR028350 DNA replication protein DnaC/insertion sequence putative ATP-binding protein YPA_3372 IPR000873 AMP-dependent synthetase/ligase YPA_3372 IPR001242 Condensation domain YPA_3372 IPR006162 Phosphopantetheine attachment site YPA_3372 IPR009081 Acyl carrier protein-like YPA_3372 IPR010071 Amino acid adenylation domain YPA_3372 IPR020845 AMP-binding, conserved site YPA_3372 IPR023213 Chloramphenicol acetyltransferase-like domain YPA_3372 IPR036736 YPA_3372 YPA_3373 IPR000873 AMP-dependent synthetase/ligase YPA_3373 IPR009081 Acyl carrier protein-like YPA_3373 IPR010071 Amino acid adenylation domain YPA_3373 IPR020845 AMP-binding, conserved site YPA_3373 IPR029058 Alpha/Beta hydrolase fold YPA_3373 IPR036736 YPA_3373 YPA_3374 IPR000873 AMP-dependent synthetase/ligase YPA_3374 IPR001031 Thioesterase YPA_3374 IPR001242 Condensation domain YPA_3374 IPR006162 Phosphopantetheine attachment site YPA_3374 IPR009081 Acyl carrier protein-like YPA_3374 IPR010071 Amino acid adenylation domain YPA_3374 IPR013217 Methyltransferase type 12 YPA_3374 IPR020845 AMP-binding, conserved site YPA_3374 IPR023213 Chloramphenicol acetyltransferase-like domain YPA_3374 IPR029058 Alpha/Beta hydrolase fold YPA_3374 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase-like YPA_3374 IPR036736 YPA_3374 YPA_3375 IPR001509 NAD-dependent epimerase/dehydratase, N-terminal domain YPA_3375 IPR036291 YPA_3375 YPA_3376 IPR000683 Oxidoreductase, N-terminal YPA_3376 IPR010091 Thiazolinyl imide reductase YPA_3376 IPR036291 YPA_3376 YPA_3377 IPR001031 Thioesterase YPA_3377 IPR029058 Alpha/Beta hydrolase fold YPA_3378 IPR011701 Major facilitator superfamily YPA_3378 IPR036259 YPA_3378 YPA_3379 IPR003439 ABC transporter-like YPA_3379 IPR003593 AAA+ ATPase domain YPA_3379 IPR011527 ABC transporter type 1, transmembrane domain YPA_3379 IPR017871 ABC transporter, conserved site YPA_3379 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPA_3379 IPR036640 YPA_3379 YPA_3380 IPR003439 ABC transporter-like YPA_3380 IPR003593 AAA+ ATPase domain YPA_3380 IPR011527 ABC transporter type 1, transmembrane domain YPA_3380 IPR017871 ABC transporter, conserved site YPA_3380 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPA_3380 IPR036640 YPA_3380 YPA_3383 IPR003474 Gluconate transporter YPA_3385 IPR005546 Autotransporter beta-domain YPA_3385 IPR006315 Outer membrane autotransporter barrel YPA_3385 IPR011050 Pectin lyase fold/virulence factor YPA_3385 IPR012332 P22 tailspike C-terminal domain-like YPA_3385 IPR036709 YPA_3385 YPA_3386 IPR006533 Type VI secretion system, RhsGE-associated Vgr protein YPA_3386 IPR010609 Gp5, C-terminal YPA_3386 IPR017847 Type VI secretion system, RhsGE-associated Vgr family subset YPA_3386 IPR037026 YPA_3386 YPA_3387 IPR011990 Tetratricopeptide-like helical domain YPA_3388 IPR001826 RHS protein YPA_3388 IPR006530 YD repeat YPA_3388 IPR022385 Rhs repeat-associated core YPA_3388 IPR031325 YPA_3388 YPA_3391 IPR001898 Sodium/sulphate symporter YPA_3391 IPR031312 YPA_3391 YPA_3392 IPR000843 Transcription regulator HTH, LacI YPA_3392 IPR010982 Lambda repressor-like, DNA-binding domain YPA_3392 IPR028082 Periplasmic binding protein-like I YPA_3393 IPR001547 Glycoside hydrolase, family 5 YPA_3393 IPR017853 Glycoside hydrolase, superfamily YPA_3394 IPR001584 Integrase, catalytic core YPA_3394 IPR012337 Ribonuclease H-like domain YPA_3394 IPR025948 HTH-like domain YPA_3394 IPR036397 YPA_3394 YPA_3395 IPR009057 Homeodomain-like YPA_3395 IPR010921 Trp repressor/replication initiator YPA_3396 IPR010272 Type VI secretion system, VCA0110 YPA_3397 IPR010732 Protein of unknown function DUF1305 YPA_3398 IPR008984 SMAD/FHA domain YPA_3398 IPR017735 Type VI secretion system, FHA domain-containing protein YPA_3399 IPR017734 Type VI secretion system, lipoprotein SciN YPA_3399 IPR038706 YPA_3399 YPA_3400 IPR010263 Protein of unknown function DUF876 YPA_3401 IPR017732 Type IV / VI secretion system, DotU YPA_3401 IPR038522 YPA_3401 YPA_3402 IPR001270 ClpA/B family YPA_3402 IPR003593 AAA+ ATPase domain YPA_3402 IPR003959 ATPase, AAA-type, core YPA_3402 IPR017729 Type VI secretion system, ATPase ClpV1 YPA_3402 IPR018368 ClpA/B, conserved site 1 YPA_3402 IPR019489 Clp ATPase, C-terminal YPA_3402 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPA_3402 IPR028299 ClpA/B, conserved site 2 YPA_3402 IPR036628 YPA_3402 YPA_3403 IPR002197 DNA binding HTH domain, Fis-type YPA_3403 IPR009057 Homeodomain-like YPA_3404 IPR017738 Type VI secretion system-associated, VCA0118 YPA_3405 IPR010657 ImpA, N-terminal YPA_3405 IPR017739 Type VI secretion system-associated, VCA0119 YPA_3406 IPR009612 ImcF-related YPA_3406 IPR010623 Domain of unknown function DUF1215 YPA_3406 IPR017731 Type VI secretion system, IcmF YPA_3406 IPR025743 ImcF-related, N-terminal domain YPA_3406 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPA_3407 IPR010657 ImpA, N-terminal YPA_3408 IPR021069 ImpA, C-terminal YPA_3409 IPR006533 Type VI secretion system, RhsGE-associated Vgr protein YPA_3409 IPR017847 Type VI secretion system, RhsGE-associated Vgr family subset YPA_3409 IPR037026 YPA_3409 YPA_3410 IPR014894 Protein DcrB YPA_3410 IPR016123 Mog1/PsbP, alpha/beta/alpha sandwich YPA_3411 IPR006530 YD repeat YPA_3411 IPR008727 PAAR motif YPA_3411 IPR031325 YPA_3411 YPA_3412 IPR001826 RHS protein YPA_3412 IPR022385 Rhs repeat-associated core YPA_3412 IPR032869 YPA_3412 YPA_3413 IPR018958 SMI1/KNR4 like domain YPA_3413 IPR037883 YPA_3413 YPA_3414 IPR014944 Toxin SymE-like YPA_3415 IPR014944 Toxin SymE-like YPA_3416 IPR001387 Cro/C1-type helix-turn-helix domain YPA_3416 IPR010982 Lambda repressor-like, DNA-binding domain YPA_3417 IPR021069 ImpA, C-terminal YPA_3418 IPR006533 Type VI secretion system, RhsGE-associated Vgr protein YPA_3418 IPR017847 Type VI secretion system, RhsGE-associated Vgr family subset YPA_3418 IPR037026 YPA_3418 YPA_3419 IPR014894 Protein DcrB YPA_3419 IPR016123 Mog1/PsbP, alpha/beta/alpha sandwich YPA_3420 IPR001826 RHS protein YPA_3420 IPR006530 YD repeat YPA_3420 IPR008727 PAAR motif YPA_3420 IPR022385 Rhs repeat-associated core YPA_3420 IPR031325 YPA_3420 YPA_3422 IPR013022 Xylose isomerase-like, TIM barrel domain YPA_3422 IPR036237 YPA_3422 YPA_3424 IPR001270 ClpA/B family YPA_3424 IPR002611 IstB-like ATP-binding protein YPA_3424 IPR003593 AAA+ ATPase domain YPA_3424 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPA_3424 IPR028350 DNA replication protein DnaC/insertion sequence putative ATP-binding protein YPA_3425 IPR001584 Integrase, catalytic core YPA_3425 IPR006120 Resolvase, HTH domain YPA_3425 IPR009057 Homeodomain-like YPA_3425 IPR012337 Ribonuclease H-like domain YPA_3426 IPR000182 GNAT domain YPA_3426 IPR016181 Acyl-CoA N-acyltransferase YPA_3427 IPR004566 Bacterial pantothenate kinase YPA_3427 IPR006083 Phosphoribulokinase/uridine kinase YPA_3427 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPA_3428 IPR003142 Biotin protein ligase, C-terminal YPA_3428 IPR004143 Biotin/lipoate A/B protein ligase YPA_3428 IPR004408 Biotin--acetyl-CoA-carboxylase ligase YPA_3428 IPR004409 Biotin operon repressor, helix-turn-helix domain YPA_3428 IPR008988 Transcriptional repressor, C-terminal YPA_3428 IPR013196 Helix-turn-helix, type 11 YPA_3428 IPR030855 YPA_3428 YPA_3428 IPR036388 YPA_3428 YPA_3428 IPR036390 YPA_3428 YPA_3429 IPR003170 UDP-N-acetylenolpyruvoylglucosamine reductase YPA_3429 IPR006094 FAD linked oxidase, N-terminal YPA_3429 IPR011601 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal YPA_3429 IPR016167 FAD-binding, type 2, subdomain 1 YPA_3429 IPR016169 CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2 YPA_3429 IPR036318 YPA_3429 YPA_3429 IPR036635 YPA_3429 YPA_3430 IPR001226 Flavodoxin, conserved site YPA_3430 IPR026816 Flavodoxin domain YPA_3430 IPR029039 Flavoprotein-like YPA_3431 IPR003445 Cation transporter YPA_3431 IPR004772 Potassium uptake protein TrkH family YPA_3432 IPR001498 Impact, N-terminal YPA_3432 IPR015269 Uncharacterised domain UPF0029, Impact, C-terminal YPA_3432 IPR020568 Ribosomal protein S5 domain 2-type fold YPA_3432 IPR020569 Uncharacterised protein family UPF0029, Impact, conserved site YPA_3432 IPR035647 YPA_3432 YPA_3432 IPR036956 YPA_3432 YPA_3433 IPR002686 Transposase IS200-like YPA_3433 IPR036515 YPA_3433 YPA_3434 IPR001498 Impact, N-terminal YPA_3434 IPR020568 Ribosomal protein S5 domain 2-type fold YPA_3434 IPR036956 YPA_3434 YPA_3435 IPR000994 Peptidase M24, structural domain YPA_3435 IPR001131 Peptidase M24B, X-Pro dipeptidase/aminopeptidase P, conserved site YPA_3435 IPR022846 Xaa-Pro dipeptidase YPA_3435 IPR029149 Creatinase/Aminopeptidase P/Spt16, N-terminal YPA_3435 IPR036005 YPA_3435 YPA_3436 IPR001753 Crotonase superfamily YPA_3436 IPR006108 3-hydroxyacyl-CoA dehydrogenase, C-terminal YPA_3436 IPR006176 3-hydroxyacyl-CoA dehydrogenase, NAD binding YPA_3436 IPR006180 3-hydroxyacyl-CoA dehydrogenase, conserved site YPA_3436 IPR008927 6-phosphogluconate dehydrogenase, C-terminal-like YPA_3436 IPR012799 Fatty oxidation complex, alpha subunit FadB YPA_3436 IPR018376 Enoyl-CoA hydratase/isomerase, conserved site YPA_3436 IPR029045 ClpP/crotonase-like domain YPA_3436 IPR036291 YPA_3436 YPA_3437 IPR002155 Thiolase YPA_3437 IPR012805 Acetyl-CoA C-acyltransferase FadA YPA_3437 IPR016039 Thiolase-like YPA_3437 IPR020610 Thiolase, active site YPA_3437 IPR020613 Thiolase, conserved site YPA_3437 IPR020615 Thiolase, acyl-enzyme intermediate active site YPA_3437 IPR020616 Thiolase, N-terminal YPA_3437 IPR020617 Thiolase, C-terminal YPA_3438 IPR001221 Phenol hydroxylase reductase YPA_3438 IPR001433 Oxidoreductase FAD/NAD(P)-binding YPA_3438 IPR008333 Oxidoreductase, FAD-binding domain YPA_3438 IPR017938 Riboflavin synthase-like beta-barrel YPA_3438 IPR039261 YPA_3438 YPA_3439 IPR002830 UbiD decarboxylyase family YPA_3439 IPR023677 3-octaprenyl-4-hydroxybenzoate carboxy-lyase YPA_3440 IPR005824 KOW YPA_3440 IPR006645 NusG, N-terminal YPA_3440 IPR010215 Transcription antitermination protein RfaH YPA_3440 IPR036735 YPA_3440 YPA_3441 IPR001731 Porphobilinogen synthase YPA_3441 IPR013785 Aldolase-type TIM barrel YPA_3441 IPR030656 YPA_3441 YPA_3442 IPR001130 TatD family YPA_3442 IPR018228 Deoxyribonuclease, TatD-related, conserved site YPA_3442 IPR032466 YPA_3442 YPA_3443 IPR001270 ClpA/B family YPA_3443 IPR002611 IstB-like ATP-binding protein YPA_3443 IPR003593 AAA+ ATPase domain YPA_3443 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPA_3443 IPR028350 DNA replication protein DnaC/insertion sequence putative ATP-binding protein YPA_3444 IPR001584 Integrase, catalytic core YPA_3444 IPR006120 Resolvase, HTH domain YPA_3444 IPR009057 Homeodomain-like YPA_3444 IPR012337 Ribonuclease H-like domain YPA_3446 IPR003997 RTX secretion protein D, Gram-negative bacteria YPA_3446 IPR006144 Secretion protein HlyD, conserved site YPA_3446 IPR011053 Single hybrid motif YPA_3447 IPR003439 ABC transporter-like YPA_3447 IPR003593 AAA+ ATPase domain YPA_3447 IPR005074 Peptidase C39, bacteriocin processing YPA_3447 IPR011527 ABC transporter type 1, transmembrane domain YPA_3447 IPR017871 ABC transporter, conserved site YPA_3447 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPA_3447 IPR036640 YPA_3447 YPA_3448 IPR002686 Transposase IS200-like YPA_3448 IPR036515 YPA_3448 YPA_3449 IPR009252 Cell division protein ZapB YPA_3450 IPR000425 Major intrinsic protein YPA_3450 IPR022357 Major intrinsic protein, conserved site YPA_3450 IPR023271 Aquaporin-like YPA_3451 IPR000577 YPA_3451 YPA_3451 IPR005999 Glycerol kinase YPA_3451 IPR018483 Carbohydrate kinase, FGGY, conserved site YPA_3451 IPR018484 Carbohydrate kinase, FGGY, N-terminal YPA_3451 IPR018485 Carbohydrate kinase, FGGY, C-terminal YPA_3452 IPR004464 Fructose-1,6-bisphosphatase class 2/Sedoheputulose-1,7-bisphosphatase YPA_3453 IPR001433 Oxidoreductase FAD/NAD(P)-binding YPA_3453 IPR008333 Oxidoreductase, FAD-binding domain YPA_3453 IPR017938 Riboflavin synthase-like beta-barrel YPA_3453 IPR039261 YPA_3453 YPA_3454 IPR008523 Lactobacillus phage LBR48, DUF805 YPA_3455 IPR009918 Protein of unknown function DUF1454 YPA_3456 IPR000652 Triosephosphate isomerase YPA_3456 IPR013785 Aldolase-type TIM barrel YPA_3456 IPR020861 Triosephosphate isomerase, active site YPA_3456 IPR022896 Triosephosphate isomerase, bacterial/eukaryotic YPA_3456 IPR035990 YPA_3456 YPA_3457 IPR000847 Transcription regulator HTH, LysR YPA_3457 IPR005119 LysR, substrate-binding YPA_3457 IPR036388 YPA_3457 YPA_3457 IPR036390 YPA_3457 YPA_3458 IPR003737 N-acetylglucosaminyl phosphatidylinositol deacetylase-related YPA_3458 IPR024078 Putative deacetylase LmbE-like domain YPA_3459 IPR005493 Ribonuclease E inhibitor RraA/Dimethylmenaquinone methyltransferase YPA_3459 IPR014165 4-carboxy-4-hydroxy-2-oxoadipate aldolase/oxaloacetate decarboxylase YPA_3459 IPR036704 YPA_3459 YPA_3460 IPR001898 Sodium/sulphate symporter YPA_3460 IPR030676 YPA_3460 YPA_3462 IPR005669 Thiosulphate/Sulfate-binding protein YPA_3462 IPR034408 YPA_3462 YPA_3463 IPR000023 Phosphofructokinase domain YPA_3463 IPR012003 ATP-dependent phosphofructokinase, prokaryotic-type YPA_3463 IPR012828 6-phosphofructokinase YPA_3463 IPR015912 Phosphofructokinase, conserved site YPA_3463 IPR022953 Phosphofructokinase YPA_3463 IPR035966 YPA_3463 YPA_3464 IPR002524 Cation efflux protein YPA_3464 IPR023783 Cation efflux pump FieF YPA_3464 IPR027469 Cation efflux protein transmembrane domain YPA_3464 IPR027470 Cation efflux protein cytoplasmic domain YPA_3464 IPR036837 YPA_3464 YPA_3465 IPR006842 Transposase (putative), YhgA-like YPA_3465 IPR010106 Conserved hypothetical protein CHP01784 YPA_3467 IPR002104 Integrase, catalytic YPA_3467 IPR011010 DNA breaking-rejoining enzyme, catalytic core YPA_3467 IPR013762 Integrase-like, catalytic core YPA_3468 IPR012899 LTXXQ motif family protein YPA_3469 IPR001789 Signal transduction response regulator, receiver domain YPA_3469 IPR001867 Signal transduction response regulator, C-terminal YPA_3469 IPR011006 CheY-like superfamily YPA_3469 IPR036388 YPA_3469 YPA_3470 IPR003594 Histidine kinase-like ATPase, C-terminal domain YPA_3470 IPR003660 HAMP linker domain YPA_3470 IPR003661 Signal transduction histidine kinase EnvZ-like, dimerisation/phosphoacceptor domain YPA_3470 IPR004358 Signal transduction histidine kinase-related protein, C-terminal YPA_3470 IPR032404 YPA_3470 YPA_3470 IPR036097 YPA_3470 YPA_3470 IPR036890 YPA_3470 YPA_3470 IPR038515 YPA_3470 YPA_3471 IPR001497 Methylated-DNA-[protein]-cysteine S-methyltransferase, active site YPA_3471 IPR004026 Ada DNA repair, metal-binding YPA_3471 IPR008332 Methylguanine DNA methyltransferase, ribonuclease-like domain YPA_3471 IPR009057 Homeodomain-like YPA_3471 IPR014048 Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding YPA_3471 IPR016221 Bifunctional regulatory protein Ada YPA_3471 IPR018060 DNA binding HTH domain, AraC-type YPA_3471 IPR035451 YPA_3471 YPA_3471 IPR036217 YPA_3471 YPA_3471 IPR036388 YPA_3471 YPA_3471 IPR036631 YPA_3471 YPA_3472 IPR001537 tRNA/rRNA methyltransferase, SpoU type YPA_3472 IPR016914 tRNA (cytidine/uridine-2'-O-)-methyltransferase YPA_3472 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal YPA_3472 IPR029028 Alpha/beta knot methyltransferases YPA_3473 IPR001451 Bacterial transferase hexapeptide repeat YPA_3473 IPR005881 Serine O-acetyltransferase YPA_3473 IPR010493 Serine acetyltransferase, N-terminal YPA_3473 IPR011004 Trimeric LpxA-like YPA_3473 IPR018357 Hexapeptide transferase, conserved site YPA_3474 IPR006109 Glycerol-3-phosphate dehydrogenase, NAD-dependent, C-terminal YPA_3474 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent YPA_3474 IPR008927 6-phosphogluconate dehydrogenase, C-terminal-like YPA_3474 IPR011128 Glycerol-3-phosphate dehydrogenase, NAD-dependent, N-terminal YPA_3474 IPR013328 Dehydrogenase, multihelical YPA_3474 IPR036291 YPA_3474 YPA_3475 IPR003708 Bacterial protein export chaperone SecB YPA_3475 IPR035958 YPA_3475 YPA_3476 IPR002109 Glutaredoxin YPA_3476 IPR011767 Glutaredoxin active site YPA_3476 IPR011900 Glutaredoxin, GrxC YPA_3476 IPR014025 Glutaredoxin subgroup YPA_3476 IPR036249 YPA_3476 YPA_3477 IPR001763 Rhodanese-like domain YPA_3477 IPR036873 YPA_3477 YPA_3478 IPR005995 Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent YPA_3478 IPR006124 Metalloenzyme YPA_3478 IPR011258 BPG-independent PGAM, N-terminal YPA_3478 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha YPA_3478 IPR017850 Alkaline-phosphatase-like, core domain YPA_3478 IPR036646 YPA_3478 YPA_3479 IPR011055 Duplicated hybrid motif YPA_3479 IPR016047 Peptidase M23 YPA_3480 IPR006837 Protein of unknown function DUF610, YibQ YPA_3480 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel YPA_3481 IPR006837 Protein of unknown function DUF610, YibQ YPA_3481 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel YPA_3482 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site YPA_3482 IPR004627 L-threonine 3-dehydrogenase YPA_3482 IPR011032 GroES (chaperonin 10)-like YPA_3482 IPR013149 Alcohol dehydrogenase, C-terminal YPA_3482 IPR013154 Alcohol dehydrogenase GroES-like YPA_3482 IPR020843 Polyketide synthase, enoylreductase YPA_3482 IPR036291 YPA_3482 YPA_3483 IPR001917 Aminotransferase, class-II, pyridoxal-phosphate binding site YPA_3483 IPR004839 Aminotransferase, class I/classII YPA_3483 IPR011282 2-amino-3-ketobutyrate coenzyme A ligase YPA_3483 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 YPA_3483 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 YPA_3483 IPR015424 Pyridoxal phosphate-dependent transferase YPA_3484 IPR001509 NAD-dependent epimerase/dehydratase, N-terminal domain YPA_3484 IPR011912 ADP-L-glycero-D-manno-heptose-6-epimerase YPA_3484 IPR036291 YPA_3484 YPA_3485 IPR002201 Glycosyl transferase, family 9 YPA_3485 IPR011910 Lipopolysaccharide heptosyltransferase II YPA_3486 IPR002201 Glycosyl transferase, family 9 YPA_3486 IPR011908 Lipopolysaccharide heptosyltransferase I YPA_3487 IPR001296 Glycosyl transferase, family 1 YPA_3487 IPR007507 3-deoxy-D-manno-octulosonic-acid transferase, N-terminal YPA_3487 IPR038107 YPA_3487 YPA_3488 IPR001173 Glycosyltransferase 2-like YPA_3488 IPR029044 Nucleotide-diphospho-sugar transferases YPA_3489 IPR001980 Coenzyme A biosynthesis protein YPA_3489 IPR004821 Cytidyltransferase-like domain YPA_3489 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold YPA_3490 IPR010663 Zinc finger, DNA glycosylase/AP lyase/isoleucyl tRNA synthetase YPA_3490 IPR010979 Ribosomal protein S13-like, H2TH YPA_3490 IPR012319 DNA glycosylase/AP lyase, catalytic domain YPA_3490 IPR015886 DNA glycosylase/AP lyase, H2TH DNA-binding YPA_3490 IPR015887 DNA glycosylase/AP lyase, zinc finger domain, DNA-binding site YPA_3490 IPR020629 Formamidopyrimidine-DNA glycosylase YPA_3490 IPR035937 YPA_3490 YPA_3491 IPR001705 Ribosomal protein L33 YPA_3491 IPR011332 Zinc-binding ribosomal protein YPA_3491 IPR018264 Ribosomal protein L33, conserved site YPA_3491 IPR038584 YPA_3491 YPA_3492 IPR001383 Ribosomal protein L28 YPA_3492 IPR026569 Ribosomal protein L28/L24 YPA_3492 IPR034704 YPA_3492 YPA_3492 IPR037147 YPA_3492 YPA_3493 IPR001405 RadC protein YPA_3493 IPR010994 RuvA domain 2-like YPA_3493 IPR020891 Uncharacterised protein family UPF0758, conserved site YPA_3493 IPR022820 Uncharacterised protein family UPF0758, YicR subfamily YPA_3493 IPR025657 RadC-like JAB domain YPA_3494 IPR003382 Flavoprotein YPA_3494 IPR005252 Coenzyme A biosynthesis bifunctional protein CoaBC YPA_3494 IPR007085 DNA/pantothenate metabolism flavoprotein, C-terminal YPA_3494 IPR035929 YPA_3494 YPA_3494 IPR036551 YPA_3494 YPA_3495 IPR008181 Deoxyuridine triphosphate nucleotidohydrolase YPA_3495 IPR029054 dUTPase-like YPA_3495 IPR036157 YPA_3495 YPA_3496 IPR001647 DNA-binding HTH domain, TetR-type YPA_3496 IPR009057 Homeodomain-like YPA_3496 IPR023769 Nucleoid occlusion factor SlmA YPA_3496 IPR023772 DNA-binding HTH domain, TetR-type, conserved site YPA_3496 IPR036271 YPA_3496 YPA_3497 IPR000836 Phosphoribosyltransferase domain YPA_3497 IPR004467 Orotate phosphoribosyl transferase domain YPA_3497 IPR023031 Orotate phosphoribosyltransferase YPA_3497 IPR029057 Phosphoribosyltransferase-like YPA_3498 IPR001247 Exoribonuclease, phosphorolytic domain 1 YPA_3498 IPR002381 Ribonuclease phosphorolytic, bacterial-type YPA_3498 IPR015847 Exoribonuclease, phosphorolytic domain 2 YPA_3498 IPR018336 Ribonuclease PH, conserved site YPA_3498 IPR020568 Ribosomal protein S5 domain 2-type fold YPA_3498 IPR027408 PNPase/RNase PH domain YPA_3498 IPR036345 YPA_3498 YPA_3499 IPR005229 Conserved hypothetical protein CHP00255 YPA_3499 IPR013527 YicC-like, N-terminal YPA_3499 IPR013551 Domain of unknown function DUF1732 YPA_3500 IPR005115 Uncharacterised domain UPF0126 YPA_3501 IPR004150 NAD-dependent DNA ligase, OB-fold YPA_3501 IPR010994 RuvA domain 2-like YPA_3501 IPR012340 Nucleic acid-binding, OB-fold YPA_3501 IPR013839 NAD-dependent DNA ligase, adenylation YPA_3501 IPR013840 NAD-dependent DNA ligase, N-terminal YPA_3501 IPR020923 DNA ligase B YPA_3502 IPR008145 Guanylate kinase/L-type calcium channel beta subunit YPA_3502 IPR017665 Guanylate kinase YPA_3502 IPR020590 Guanylate kinase, conserved site YPA_3502 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPA_3503 IPR003716 DNA-directed RNA polymerase, omega subunit YPA_3503 IPR006110 RNA polymerase, subunit omega/K/RPB6 YPA_3503 IPR012293 RNA polymerase subunit, RPB6/omega YPA_3503 IPR036161 YPA_3503 YPA_3504 IPR002912 ACT domain YPA_3504 IPR003607 HD/PDEase domain YPA_3504 IPR004095 TGS YPA_3504 IPR004811 RelA/SpoT family YPA_3504 IPR007685 RelA/SpoT YPA_3504 IPR012675 Beta-grasp domain YPA_3504 IPR012676 TGS-like YPA_3505 IPR001537 tRNA/rRNA methyltransferase, SpoU type YPA_3505 IPR022724 RNA methyltransferase, SpoU/TrmH type, C-terminal YPA_3505 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal YPA_3505 IPR029028 Alpha/beta knot methyltransferases YPA_3505 IPR033671 YPA_3505 YPA_3506 IPR001650 Helicase, C-terminal YPA_3506 IPR004609 ATP-dependent DNA helicase RecG YPA_3506 IPR011545 DEAD/DEAH box helicase domain YPA_3506 IPR012340 Nucleic acid-binding, OB-fold YPA_3506 IPR014001 Helicase, superfamily 1/2, ATP-binding domain YPA_3506 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPA_3506 IPR033454 YPA_3506 YPA_3507 IPR004445 Sodium/glutamate symporter YPA_3508 IPR006042 Xanthine/uracil permease YPA_3508 IPR006043 Xanthine/uracil/vitamin C permease YPA_3508 IPR017588 Xanthine permease YPA_3510 IPR000182 GNAT domain YPA_3510 IPR012660 Thioesterase, putative YPA_3510 IPR016181 Acyl-CoA N-acyltransferase YPA_3510 IPR029069 HotDog domain YPA_3511 IPR001584 Integrase, catalytic core YPA_3511 IPR006120 Resolvase, HTH domain YPA_3511 IPR009057 Homeodomain-like YPA_3511 IPR012337 Ribonuclease H-like domain YPA_3512 IPR001270 ClpA/B family YPA_3512 IPR002611 IstB-like ATP-binding protein YPA_3512 IPR003593 AAA+ ATPase domain YPA_3512 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPA_3512 IPR028350 DNA replication protein DnaC/insertion sequence putative ATP-binding protein YPA_3513 IPR003732 D-tyrosyl-tRNA(Tyr) deacylase YPA_3513 IPR023509 D-Tyr tRNAtyr deacylase-like domain YPA_3514 IPR017039 Virulence factor BrkB YPA_3514 IPR023679 Uncharacterised protein family UPF0761, bacterial YPA_3515 IPR006439 HAD hydrolase, subfamily IA YPA_3515 IPR023198 Phosphoglycolate phosphatase, domain 2 YPA_3515 IPR023214 HAD-like domain YPA_3515 IPR036412 YPA_3515 YPA_3516 IPR000640 Translation elongation factor EFG, V domain YPA_3516 IPR000795 Elongation factor, GTP-binding domain YPA_3516 IPR004161 Translation elongation factor EFTu/EF1A, domain 2 YPA_3516 IPR005225 Small GTP-binding protein domain YPA_3516 IPR006298 GTP-binding protein TypA YPA_3516 IPR009000 Translation protein, beta-barrel domain YPA_3516 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPA_3516 IPR031157 YPA_3516 YPA_3516 IPR035647 YPA_3516 YPA_3517 IPR001637 Glutamine synthetase class-I, adenylation site YPA_3517 IPR004809 Glutamine synthetase type I YPA_3517 IPR008146 Glutamine synthetase, catalytic domain YPA_3517 IPR008147 Glutamine synthetase, beta-Grasp YPA_3517 IPR014746 Glutamine synthetase/guanido kinase, catalytic domain YPA_3517 IPR027302 Glutamine synthetase, N-terminal conserved site YPA_3517 IPR027303 Glutamine synthetase, glycine-rich site YPA_3517 IPR036651 YPA_3517 YPA_3518 IPR002686 Transposase IS200-like YPA_3518 IPR036515 YPA_3518 YPA_3519 IPR000014 PAS domain YPA_3519 IPR003594 Histidine kinase-like ATPase, C-terminal domain YPA_3519 IPR003661 Signal transduction histidine kinase EnvZ-like, dimerisation/phosphoacceptor domain YPA_3519 IPR004358 Signal transduction histidine kinase-related protein, C-terminal YPA_3519 IPR013767 PAS fold YPA_3519 IPR035965 YPA_3519 YPA_3519 IPR036097 YPA_3519 YPA_3519 IPR036890 YPA_3519 YPA_3520 IPR001789 Signal transduction response regulator, receiver domain YPA_3520 IPR002078 RNA polymerase sigma factor 54 interaction domain YPA_3520 IPR002197 DNA binding HTH domain, Fis-type YPA_3520 IPR003593 AAA+ ATPase domain YPA_3520 IPR009057 Homeodomain-like YPA_3520 IPR010114 Signal transduction response regulator, nitrogen regulation NR(I) YPA_3520 IPR011006 CheY-like superfamily YPA_3520 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 YPA_3520 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 YPA_3520 IPR025944 Sigma-54 interaction domain, conserved site YPA_3520 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPA_3521 IPR004558 Coproporphyrinogen III oxidase, oxygen-independent, HemN YPA_3521 IPR006638 Elongator protein 3/MiaB/NifB YPA_3521 IPR007197 Radical SAM YPA_3521 IPR010723 HemN, C-terminal domain YPA_3521 IPR023404 Radical SAM, alpha/beta horseshoe YPA_3522 IPR007336 Der GTPase activator YPA_3523 IPR006073 GTP binding domain YPA_3523 IPR019987 GTP-binding protein, ribosome biogenesis, YsxC YPA_3523 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPA_3524 IPR002686 Transposase IS200-like YPA_3524 IPR036515 YPA_3524 YPA_3525 IPR001098 DNA-directed DNA polymerase, family A, palm domain YPA_3525 IPR002298 DNA polymerase A YPA_3525 IPR002421 5'-3' exonuclease, N-terminal YPA_3525 IPR002562 3'-5' exonuclease domain YPA_3525 IPR008918 Helix-hairpin-helix motif, class 2 YPA_3525 IPR012337 Ribonuclease H-like domain YPA_3525 IPR018320 DNA polymerase 1 YPA_3525 IPR019760 DNA-directed DNA polymerase, family A, conserved site YPA_3525 IPR020045 5'-3' exonuclease, C-terminal domain YPA_3525 IPR020046 5'-3' exonuclease, alpha-helical arch, N-terminal YPA_3525 IPR029060 PIN domain-like YPA_3525 IPR036279 YPA_3525 YPA_3525 IPR036397 YPA_3525 YPA_3526 IPR001853 DSBA-like thioredoxin domain YPA_3526 IPR017937 Thioredoxin, conserved site YPA_3526 IPR023205 Thiol:disulphide interchange protein DsbA/DsbL YPA_3526 IPR036249 YPA_3526 YPA_3527 IPR002575 Aminoglycoside phosphotransferase YPA_3527 IPR011009 Protein kinase-like domain YPA_3527 IPR032882 YPA_3527 YPA_3528 IPR009383 Protein of unknown function DUF1040 YPA_3528 IPR038134 YPA_3528 YPA_3529 IPR013482 Molybdenum cofactor guanylyltransferase YPA_3529 IPR025877 MobA-like NTP transferase domain YPA_3529 IPR029044 Nucleotide-diphospho-sugar transferases YPA_3530 IPR004435 Molybdopterin-guanine dinucleotide biosynthesis protein B (MobB) domain YPA_3530 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPA_3531 IPR001207 Transposase, mutator type YPA_3533 IPR001584 Integrase, catalytic core YPA_3533 IPR006120 Resolvase, HTH domain YPA_3533 IPR009057 Homeodomain-like YPA_3533 IPR012337 Ribonuclease H-like domain YPA_3534 IPR001270 ClpA/B family YPA_3534 IPR002611 IstB-like ATP-binding protein YPA_3534 IPR003593 AAA+ ATPase domain YPA_3534 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPA_3534 IPR028350 DNA replication protein DnaC/insertion sequence putative ATP-binding protein YPA_3536 IPR000086 NUDIX hydrolase domain YPA_3536 IPR003561 Mutator MutT YPA_3536 IPR015797 NUDIX hydrolase domain-like YPA_3536 IPR020084 NUDIX hydrolase, conserved site YPA_3536 IPR020476 NUDIX hydrolase YPA_3537 IPR000185 Protein translocase subunit SecA YPA_3537 IPR004027 SEC-C motif YPA_3537 IPR011115 SecA DEAD-like, N-terminal YPA_3537 IPR011116 SecA Wing/Scaffold YPA_3537 IPR011130 SecA preprotein, cross-linking domain YPA_3537 IPR020937 SecA conserved site YPA_3537 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPA_3537 IPR036266 YPA_3537 YPA_3537 IPR036670 YPA_3537 YPA_3538 IPR009502 Secretion monitor YPA_3539 IPR007922 Protein of unknown function DUF721/UPF0232 YPA_3540 IPR004463 UDP-3-O-acyl N-acetylglucosamine deacetylase YPA_3540 IPR011334 UDP-3-O-acyl N-acetylglucosamine deacetylase, C-terminal YPA_3540 IPR015870 UDP-3-O-acyl N-acetylglucosamine deacetylase, N-terminal YPA_3540 IPR020568 Ribosomal protein S5 domain 2-type fold YPA_3541 IPR000158 Cell division protein FtsZ YPA_3541 IPR003008 Tubulin/FtsZ, GTPase domain YPA_3541 IPR008280 Tubulin/FtsZ, C-terminal YPA_3541 IPR018316 Tubulin/FtsZ, 2-layer sandwich domain YPA_3541 IPR020805 Cell division protein FtsZ, conserved site YPA_3541 IPR024757 Cell division protein FtsZ, C-terminal YPA_3541 IPR036525 YPA_3541 YPA_3542 IPR003494 SHS2 domain inserted in FtsA YPA_3542 IPR020823 Cell division protein FtsA YPA_3543 IPR005548 Cell division protein FtsQ/DivIB YPA_3543 IPR013685 Polypeptide-transport-associated, FtsQ-type YPA_3543 IPR026579 Cell division protein FtsQ YPA_3544 IPR000291 D-alanine--D-alanine ligase/VANA/B/C, conserved site YPA_3544 IPR005905 D-alanine--D-alanine ligase YPA_3544 IPR011095 D-alanine--D-alanine ligase, C-terminal YPA_3544 IPR011127 D-alanine--D-alanine ligase, N-terminal domain YPA_3544 IPR013815 ATP-grasp fold, subdomain 1 YPA_3544 IPR016185 Pre-ATP-grasp domain YPA_3545 IPR000713 Mur ligase, N-terminal YPA_3545 IPR004101 Mur ligase, C-terminal YPA_3545 IPR005758 UDP-N-acetylmuramate-alanine ligase YPA_3545 IPR013221 Mur ligase, central YPA_3545 IPR036565 YPA_3545 YPA_3545 IPR036615 YPA_3545 YPA_3546 IPR004276 Glycosyl transferase, family 28 YPA_3546 IPR006009 N-acetylglucosaminyltransferase, MurG YPA_3546 IPR007235 Glycosyl transferase, family 28, C-terminal YPA_3547 IPR001182 Cell cycle protein FtsW/RodA YPA_3547 IPR013437 Cell division protein FtsW YPA_3547 IPR018365 Cell cycle, FtsW / RodA / SpoVE, conserved site YPA_3548 IPR004101 Mur ligase, C-terminal YPA_3548 IPR005762 UDP-N-acetylmuramoylalanine-D-glutamate ligase YPA_3548 IPR013221 Mur ligase, central YPA_3548 IPR036565 YPA_3548 YPA_3548 IPR036615 YPA_3548 YPA_3549 IPR000715 Glycosyl transferase, family 4 YPA_3549 IPR003524 Phospho-N-acetylmuramoyl-pentapeptide transferase YPA_3549 IPR018480 Phospho-N-acetylmuramoyl-pentapeptide transferase, conserved site YPA_3550 IPR000713 Mur ligase, N-terminal YPA_3550 IPR004101 Mur ligase, C-terminal YPA_3550 IPR005863 UDP-MurNAc-pentapeptide synthetase YPA_3550 IPR013221 Mur ligase, central YPA_3550 IPR035911 YPA_3550 YPA_3550 IPR036565 YPA_3550 YPA_3550 IPR036615 YPA_3550 YPA_3551 IPR000713 Mur ligase, N-terminal YPA_3551 IPR004101 Mur ligase, C-terminal YPA_3551 IPR005761 UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase YPA_3551 IPR013221 Mur ligase, central YPA_3551 IPR035911 YPA_3551 YPA_3551 IPR036565 YPA_3551 YPA_3551 IPR036615 YPA_3551 YPA_3552 IPR001460 Penicillin-binding protein, transpeptidase YPA_3552 IPR005311 Penicillin-binding protein, dimerisation domain YPA_3552 IPR012338 Beta-lactamase/transpeptidase-like YPA_3552 IPR036138 YPA_3552 YPA_3552 IPR037532 YPA_3552 YPA_3553 IPR011922 Cell division protein FtsL YPA_3554 IPR002903 Ribosomal RNA small subunit methyltransferase H YPA_3554 IPR023397 S-adenosyl-L-methionine-dependent methyltransferase, MraW, recognition domain YPA_3554 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase-like YPA_3555 IPR003444 MraZ YPA_3555 IPR020603 MraZ domain YPA_3555 IPR037914 YPA_3555 YPA_3555 IPR038619 YPA_3555 YPA_3556 IPR010574 L-alanine exporter AlaE YPA_3557 IPR000843 Transcription regulator HTH, LacI YPA_3557 IPR001761 Periplasmic binding protein/LacI sugar binding domain YPA_3557 IPR010982 Lambda repressor-like, DNA-binding domain YPA_3557 IPR012781 D-fructose-responsive transcription factor YPA_3557 IPR028082 Periplasmic binding protein-like I YPA_3558 IPR002686 Transposase IS200-like YPA_3558 IPR036515 YPA_3558 YPA_3559 IPR002912 ACT domain YPA_3559 IPR004789 Acetolactate synthase, small subunit YPA_3559 IPR019455 Acetolactate synthase, small subunit, C-terminal YPA_3559 IPR027271 YPA_3559 YPA_3560 IPR000399 TPP-binding enzyme, conserved site YPA_3560 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding YPA_3560 IPR012000 Thiamine pyrophosphate enzyme, central domain YPA_3560 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain YPA_3560 IPR012846 Acetolactate synthase, large subunit, biosynthetic YPA_3560 IPR029035 DHS-like NAD/FAD-binding domain YPA_3560 IPR029061 Thiamin diphosphate-binding fold YPA_3561 IPR000873 AMP-dependent synthetase/ligase YPA_3561 IPR020845 AMP-binding, conserved site YPA_3562 IPR000847 Transcription regulator HTH, LysR YPA_3562 IPR005119 LysR, substrate-binding YPA_3562 IPR036388 YPA_3562 YPA_3562 IPR036390 YPA_3562 YPA_3563 IPR002686 Transposase IS200-like YPA_3563 IPR036515 YPA_3563 YPA_3564 IPR000891 Pyruvate carboxyltransferase YPA_3564 IPR002034 Alpha-isopropylmalate/homocitrate synthase, conserved site YPA_3564 IPR005671 2-isopropylmalate synthase, bacterial-type YPA_3564 IPR013709 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain YPA_3564 IPR013785 Aldolase-type TIM barrel YPA_3564 IPR036230 YPA_3564 YPA_3565 IPR004429 Isopropylmalate dehydrogenase YPA_3565 IPR019818 Isocitrate/isopropylmalate dehydrogenase, conserved site YPA_3565 IPR024084 Isopropylmalate dehydrogenase-like domain YPA_3566 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha YPA_3566 IPR004430 3-isopropylmalate dehydratase, large subunit YPA_3566 IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 YPA_3566 IPR018136 Aconitase family, 4Fe-4S cluster binding site YPA_3566 IPR036008 YPA_3566 YPA_3567 IPR000573 Aconitase A/isopropylmalate dehydratase small subunit, swivel YPA_3567 IPR004431 3-isopropylmalate dehydratase, small subunit YPA_3567 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel YPA_3568 IPR036259 YPA_3568 YPA_3569 IPR001584 Integrase, catalytic core YPA_3569 IPR006120 Resolvase, HTH domain YPA_3569 IPR009057 Homeodomain-like YPA_3569 IPR012337 Ribonuclease H-like domain YPA_3570 IPR001270 ClpA/B family YPA_3570 IPR002611 IstB-like ATP-binding protein YPA_3570 IPR003593 AAA+ ATPase domain YPA_3570 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPA_3570 IPR028350 DNA replication protein DnaC/insertion sequence putative ATP-binding protein YPA_3571 IPR011701 Major facilitator superfamily YPA_3571 IPR036259 YPA_3571 YPA_3572 IPR000914 Bacterial extracellular solute-binding protein, family 5 YPA_3572 IPR023767 Transcriptional regulator SgrR YPA_3572 IPR025370 Transcriptional regulator SgrR, N-terminal HTH domain YPA_3572 IPR036390 YPA_3572 YPA_3573 IPR005948 Thiamine ABC transporter periplasmic binding protein YPA_3573 IPR005967 Proteobacterial thiamine ABC transporter, periplasmic binding protein YPA_3574 IPR000515 MetI-like domain YPA_3574 IPR005947 Thiamine ABC transporter, permease protein YPA_3574 IPR035906 YPA_3574 YPA_3575 IPR003439 ABC transporter-like YPA_3575 IPR003593 AAA+ ATPase domain YPA_3575 IPR005968 Thiamine ABC transporter, ATP-binding protein ThiQ YPA_3575 IPR017871 ABC transporter, conserved site YPA_3575 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPA_3576 IPR032816 YPA_3576 YPA_3577 IPR006133 DNA-directed DNA polymerase, family B, exonuclease domain YPA_3577 IPR006134 DNA-directed DNA polymerase, family B, multifunctional domain YPA_3577 IPR006172 DNA-directed DNA polymerase, family B YPA_3577 IPR012337 Ribonuclease H-like domain YPA_3577 IPR017964 DNA-directed DNA polymerase, family B, conserved site YPA_3577 IPR023211 DNA polymerase, palm domain YPA_3577 IPR036397 YPA_3577 YPA_3578 IPR000330 SNF2-related YPA_3578 IPR001650 Helicase, C-terminal YPA_3578 IPR014001 Helicase, superfamily 1/2, ATP-binding domain YPA_3578 IPR022737 RNA polymerase recycling, bacterial, C-terminal YPA_3578 IPR023949 RNA polymerase-associated protein RapA YPA_3578 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPA_3578 IPR038718 YPA_3578 YPA_3580 IPR009612 ImcF-related YPA_3580 IPR010623 Domain of unknown function DUF1215 YPA_3580 IPR017731 Type VI secretion system, IcmF YPA_3580 IPR025743 ImcF-related, N-terminal domain YPA_3580 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPA_3581 IPR006665 Outer membrane protein, OmpA/MotB, C-terminal YPA_3581 IPR017732 Type IV / VI secretion system, DotU YPA_3581 IPR036737 YPA_3581 YPA_3581 IPR038522 YPA_3581 YPA_3582 IPR010263 Protein of unknown function DUF876 YPA_3583 IPR017734 Type VI secretion system, lipoprotein SciN YPA_3583 IPR038706 YPA_3583 YPA_3584 IPR025425 Domain of unknown function DUF4150 YPA_3585 IPR021927 Protein of unknown function DUF3540 YPA_3586 IPR001646 Pentapeptide repeat YPA_3587 IPR001646 Pentapeptide repeat YPA_3588 IPR018683 Domain of unknown function DUF2169 YPA_3589 IPR006533 Type VI secretion system, RhsGE-associated Vgr protein YPA_3589 IPR017847 Type VI secretion system, RhsGE-associated Vgr family subset YPA_3589 IPR037026 YPA_3589 YPA_3590 IPR001270 ClpA/B family YPA_3590 IPR003593 AAA+ ATPase domain YPA_3590 IPR003959 ATPase, AAA-type, core YPA_3590 IPR004176 Clp, N-terminal YPA_3590 IPR017729 Type VI secretion system, ATPase ClpV1 YPA_3590 IPR019489 Clp ATPase, C-terminal YPA_3590 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPA_3590 IPR036628 YPA_3590 YPA_3591 IPR010732 Protein of unknown function DUF1305 YPA_3592 IPR010272 Type VI secretion system, VCA0110 YPA_3593 IPR007048 GpW/Gp25/anti-adapter protein IraD YPA_3594 IPR008514 Type VI secretion system effector, Hcp YPA_3594 IPR036624 YPA_3594 YPA_3595 IPR010269 Protein of unknown function DUF877 YPA_3596 IPR001584 Integrase, catalytic core YPA_3596 IPR006120 Resolvase, HTH domain YPA_3596 IPR009057 Homeodomain-like YPA_3596 IPR012337 Ribonuclease H-like domain YPA_3597 IPR001270 ClpA/B family YPA_3597 IPR002611 IstB-like ATP-binding protein YPA_3597 IPR003593 AAA+ ATPase domain YPA_3597 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPA_3597 IPR028350 DNA replication protein DnaC/insertion sequence putative ATP-binding protein YPA_3599 IPR001584 Integrase, catalytic core YPA_3599 IPR012337 Ribonuclease H-like domain YPA_3599 IPR025948 HTH-like domain YPA_3599 IPR036397 YPA_3599 YPA_3600 IPR002514 Transposase IS3/IS911family YPA_3600 IPR009057 Homeodomain-like YPA_3601 IPR002695 AICARFT/IMPCHase bienzyme YPA_3601 IPR011607 Methylglyoxal synthase-like domain YPA_3601 IPR016193 Cytidine deaminase-like YPA_3601 IPR024051 AICAR transformylase domain YPA_3601 IPR036914 YPA_3601 YPA_3602 IPR000115 Phosphoribosylglycinamide synthetase YPA_3602 IPR011054 Rudiment single hybrid motif YPA_3602 IPR013815 ATP-grasp fold, subdomain 1 YPA_3602 IPR016185 Pre-ATP-grasp domain YPA_3602 IPR020559 Phosphoribosylglycinamide synthetase, conserved site YPA_3602 IPR020560 Phosphoribosylglycinamide synthetase, C-domain YPA_3602 IPR020561 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain YPA_3602 IPR020562 Phosphoribosylglycinamide synthetase, N-terminal YPA_3602 IPR037123 YPA_3602 YPA_3603 IPR010858 Protein of unknown function DUF1481 YPA_3603 IPR016500 Uncharacterised conserved protein UCP006993 YPA_3604 IPR000119 Histone-like bacterial DNA-binding protein YPA_3604 IPR010992 Integration host factor (IHF)-like DNA-binding domain YPA_3604 IPR020816 Histone-like DNA-binding protein, conserved site YPA_3605 IPR007338 Protein of unknown function DUF416 YPA_3605 IPR023381 YP001051499.1-like domain YPA_3606 IPR007581 Endonuclease V YPA_3607 IPR000257 Uroporphyrinogen decarboxylase (URO-D) YPA_3607 IPR006361 Uroporphyrinogen decarboxylase HemE YPA_3607 IPR038071 YPA_3607 YPA_3609 IPR000086 NUDIX hydrolase domain YPA_3609 IPR015376 Zinc ribbon, NADH pyrophosphatase YPA_3609 IPR015797 NUDIX hydrolase domain-like YPA_3609 IPR020084 NUDIX hydrolase, conserved site YPA_3609 IPR022925 NADH pyrophosphatase NudC YPA_3610 IPR007448 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ YPA_3610 IPR023785 Regulator of RNA polymerase sigma(70) subunit, Rsd YPA_3610 IPR038309 YPA_3610 YPA_3611 IPR002817 Thiamine biosynthesis protein ThiC YPA_3611 IPR025747 ThiC-associated domain YPA_3611 IPR037509 YPA_3611 YPA_3611 IPR038521 YPA_3611 YPA_3612 IPR013785 Aldolase-type TIM barrel YPA_3612 IPR022998 Thiamin phosphate synthase superfamily YPA_3612 IPR034291 YPA_3612 YPA_3612 IPR036206 YPA_3612 YPA_3613 IPR000594 UBA/THIF-type NAD/FAD binding fold YPA_3613 IPR035985 YPA_3613 YPA_3614 IPR003749 ThiamineS/Molybdopterin converting factor subunit 1 YPA_3614 IPR010035 ThiS, thiamine-biosynthesis YPA_3614 IPR012675 Beta-grasp domain YPA_3614 IPR016155 Molybdopterin synthase/thiamin biosynthesis sulphur carrier, beta-grasp YPA_3615 IPR008867 Thiazole biosynthesis YPA_3615 IPR013785 Aldolase-type TIM barrel YPA_3615 IPR033983 YPA_3615 YPA_3616 IPR007197 Radical SAM YPA_3616 IPR010722 Biotin and thiamin synthesis-associated domain YPA_3616 IPR012726 Thiazole biosynthesis ThiH YPA_3616 IPR013785 Aldolase-type TIM barrel YPA_3617 IPR002686 Transposase IS200-like YPA_3617 IPR036515 YPA_3617 YPA_3618 IPR000722 RNA polymerase, alpha subunit YPA_3618 IPR006592 RNA polymerase, N-terminal YPA_3618 IPR007066 RNA polymerase Rpb1, domain 3 YPA_3618 IPR007080 RNA polymerase Rpb1, domain 1 YPA_3618 IPR007081 RNA polymerase Rpb1, domain 5 YPA_3618 IPR007083 RNA polymerase Rpb1, domain 4 YPA_3618 IPR012754 DNA-directed RNA polymerase, subunit beta-prime YPA_3618 IPR038120 YPA_3618 YPA_3619 IPR007120 DNA-directed RNA polymerase, subunit 2, domain 6 YPA_3619 IPR007121 RNA polymerase, beta subunit, conserved site YPA_3619 IPR007641 RNA polymerase Rpb2, domain 7 YPA_3619 IPR007642 RNA polymerase Rpb2, domain 2 YPA_3619 IPR007644 RNA polymerase, beta subunit, protrusion YPA_3619 IPR007645 RNA polymerase Rpb2, domain 3 YPA_3619 IPR010243 DNA-directed RNA polymerase, beta subunit YPA_3619 IPR014724 RNA polymerase Rpb2, OB-fold YPA_3619 IPR019462 DNA-directed RNA polymerase, beta subunit, external 1 domain YPA_3619 IPR037033 YPA_3619 YPA_3619 IPR037034 YPA_3619 YPA_3620 IPR000206 Ribosomal protein L7/L12 YPA_3620 IPR008932 Ribosomal protein L7/L12, oligomerisation YPA_3620 IPR013823 Ribosomal protein L7/L12, C-terminal YPA_3620 IPR014719 Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like YPA_3620 IPR036235 YPA_3620 YPA_3621 IPR001790 Ribosomal protein L10/acidic P0 YPA_3621 IPR002363 Ribosomal protein L10, eubacterial, conserved site YPA_3621 IPR022973 Ribosomal protein L10 YPA_3622 IPR002143 Ribosomal protein L1 YPA_3622 IPR005878 Ribosomal protein L1, bacterial-type YPA_3622 IPR016095 Ribosomal protein L1, 3-layer alpha/beta-sandwich YPA_3622 IPR023673 Ribosomal protein L1, conserved site YPA_3622 IPR023674 Ribosomal protein L1-like YPA_3622 IPR028364 Ribosomal protein L1/ribosomal biogenesis protein YPA_3623 IPR000911 Ribosomal protein L11/L12 YPA_3623 IPR006519 Ribosomal protein L11, bacterial-type YPA_3623 IPR020783 Ribosomal protein L11, C-terminal YPA_3623 IPR020784 Ribosomal protein L11, N-terminal YPA_3623 IPR020785 Ribosomal protein L11, conserved site YPA_3623 IPR036769 YPA_3623 YPA_3623 IPR036796 YPA_3623 YPA_3624 IPR001062 Transcription antitermination protein, NusG YPA_3624 IPR005824 KOW YPA_3624 IPR006645 NusG, N-terminal YPA_3624 IPR008991 Translation protein SH3-like domain YPA_3624 IPR014722 Ribosomal protein L2 domain 2 YPA_3624 IPR015869 Transcription antitermination protein, NusG, bacteria, conserved site YPA_3624 IPR036735 YPA_3624 YPA_3625 IPR001901 Protein translocase complex, SecE/Sec61-gamma subunit YPA_3625 IPR005807 SecE subunit of protein translocation complex YPA_3625 IPR038379 YPA_3625 YPA_3626 IPR000795 Elongation factor, GTP-binding domain YPA_3626 IPR004160 Translation elongation factor EFTu/EF1A, C-terminal YPA_3626 IPR004161 Translation elongation factor EFTu/EF1A, domain 2 YPA_3626 IPR004541 Translation elongation factor EFTu/EF1A, bacterial/organelle YPA_3626 IPR005225 Small GTP-binding protein domain YPA_3626 IPR009000 Translation protein, beta-barrel domain YPA_3626 IPR009001 Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal YPA_3626 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPA_3626 IPR031157 YPA_3626 YPA_3628 IPR001270 ClpA/B family YPA_3628 IPR002611 IstB-like ATP-binding protein YPA_3628 IPR003593 AAA+ ATPase domain YPA_3628 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPA_3628 IPR028350 DNA replication protein DnaC/insertion sequence putative ATP-binding protein YPA_3629 IPR001584 Integrase, catalytic core YPA_3629 IPR006120 Resolvase, HTH domain YPA_3629 IPR009057 Homeodomain-like YPA_3629 IPR012337 Ribonuclease H-like domain YPA_3631 IPR000683 Oxidoreductase, N-terminal YPA_3631 IPR036291 YPA_3631 YPA_3632 IPR003313 AraC-type arabinose-binding/dimerisation domain YPA_3632 IPR009057 Homeodomain-like YPA_3632 IPR014710 RmlC-like jelly roll fold YPA_3632 IPR018060 DNA binding HTH domain, AraC-type YPA_3632 IPR037923 YPA_3632 YPA_3633 IPR007721 D-ribose pyranase RbsD/L-fucose mutarotase FucU YPA_3633 IPR023750 RbsD-like domain YPA_3634 IPR002139 Ribokinase YPA_3634 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site YPA_3634 IPR011611 Carbohydrate kinase PfkB YPA_3634 IPR011877 Ribokinase, bacterial YPA_3634 IPR029056 Ribokinase-like YPA_3635 IPR002915 DeoC/FbaB/ lacD aldolase YPA_3635 IPR011343 Deoxyribose-phosphate aldolase YPA_3635 IPR013785 Aldolase-type TIM barrel YPA_3636 IPR005025 NADPH-dependent FMN reductase-like YPA_3636 IPR020048 NADPH-dependent FMN reductase, SsuE YPA_3636 IPR029039 Flavoprotein-like YPA_3637 IPR001638 Extracellular solute-binding protein, family 3 YPA_3637 IPR010067 ABC transporter, substrate-binding protein, aliphatic sulphonates YPA_3637 IPR015168 SsuA/THI5-like YPA_3638 IPR011251 Luciferase-like domain YPA_3638 IPR019911 Alkanesulphonate monooxygenase, FMN-dependent YPA_3638 IPR036661 YPA_3638 YPA_3639 IPR000515 MetI-like domain YPA_3639 IPR035906 YPA_3639 YPA_3640 IPR003439 ABC transporter-like YPA_3640 IPR003593 AAA+ ATPase domain YPA_3640 IPR017871 ABC transporter, conserved site YPA_3640 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPA_3641 IPR007337 RelB antitoxin/Antitoxin DinJ YPA_3641 IPR026262 Antitoxin DinJ YPA_3642 IPR006043 Xanthine/uracil/vitamin C permease YPA_3643 IPR004705 Cation/H+ exchanger, CPA1 family, bacteria YPA_3643 IPR006153 Cation/H+ exchanger YPA_3645 IPR004960 Bacterial lipid A biosynthesis acyltransferase YPA_3645 IPR011920 Lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase YPA_3645 IPR030857 YPA_3645 YPA_3646 IPR025997 Periplasmic binding protein domain YPA_3646 IPR028082 Periplasmic binding protein-like I YPA_3647 IPR003439 ABC transporter-like YPA_3647 IPR003593 AAA+ ATPase domain YPA_3647 IPR017871 ABC transporter, conserved site YPA_3647 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPA_3648 IPR001851 ABC transporter, permease YPA_3649 IPR001851 ABC transporter, permease YPA_3650 IPR000577 YPA_3650 YPA_3650 IPR006003 Carbohydrate kinase, FGGY-related YPA_3650 IPR018484 Carbohydrate kinase, FGGY, N-terminal YPA_3650 IPR018485 Carbohydrate kinase, FGGY, C-terminal YPA_3651 IPR001347 Sugar isomerase (SIS) YPA_3652 IPR004045 Glutathione S-transferase, N-terminal YPA_3652 IPR036249 YPA_3652 YPA_3652 IPR036282 YPA_3652 YPA_3653 IPR027372 Phytase-like domain YPA_3654 IPR036869 YPA_3654 YPA_3655 IPR002686 Transposase IS200-like YPA_3655 IPR036515 YPA_3655 YPA_3656 IPR002059 Cold-shock protein, DNA-binding YPA_3656 IPR011129 Cold shock protein YPA_3656 IPR012156 Cold shock, CspA YPA_3656 IPR012340 Nucleic acid-binding, OB-fold YPA_3656 IPR019844 Cold-shock conserved site YPA_3657 IPR002059 Cold-shock protein, DNA-binding YPA_3657 IPR011129 Cold shock protein YPA_3657 IPR012156 Cold shock, CspA YPA_3657 IPR012340 Nucleic acid-binding, OB-fold YPA_3657 IPR019844 Cold-shock conserved site YPA_3659 IPR008816 Glycine zipper 2TM domain YPA_3660 IPR001279 Beta-lactamase-like YPA_3660 IPR036866 YPA_3660 YPA_3661 IPR002204 3-hydroxyisobutyrate dehydrogenase-related, conserved site YPA_3661 IPR006115 6-phosphogluconate dehydrogenase, NADP-binding YPA_3661 IPR008927 6-phosphogluconate dehydrogenase, C-terminal-like YPA_3661 IPR013328 Dehydrogenase, multihelical YPA_3661 IPR015815 Hydroxy monocarboxylic acid anion dehydrogenase, HIBADH-type YPA_3661 IPR029154 NADP-dependent 3-hydroxyisobutyrate dehydrogenase, NAD-binding domain YPA_3661 IPR036291 YPA_3661 YPA_3662 IPR003779 Carboxymuconolactone decarboxylase-like YPA_3662 IPR029032 AhpD-like YPA_3663 IPR005829 Sugar transporter, conserved site YPA_3663 IPR011701 Major facilitator superfamily YPA_3663 IPR036259 YPA_3663 YPA_3664 IPR000524 Transcription regulator HTH, GntR YPA_3664 IPR008920 Transcription regulator FadR/GntR, C-terminal YPA_3664 IPR011711 GntR, C-terminal YPA_3664 IPR036388 YPA_3664 YPA_3664 IPR036390 YPA_3664 YPA_3666 IPR002197 DNA binding HTH domain, Fis-type YPA_3666 IPR005412 DNA-binding protein Fis YPA_3666 IPR009057 Homeodomain-like YPA_3667 IPR001269 tRNA-dihydrouridine synthase YPA_3667 IPR004652 tRNA-dihydrouridine synthase, TIM-barrel, NifR3 YPA_3667 IPR013785 Aldolase-type TIM barrel YPA_3667 IPR018517 tRNA-dihydrouridine synthase, conserved site YPA_3667 IPR024036 tRNA-dihydrouridine synthase, putative, C-terminal YPA_3667 IPR032887 YPA_3667 YPA_3668 IPR004498 Ribosomal protein L11 methyltransferase YPA_3668 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase-like YPA_3669 IPR001734 Sodium/solute symporter YPA_3669 IPR011849 Sodium/pantothenate symporter YPA_3669 IPR018212 Sodium/solute symporter, conserved site YPA_3669 IPR038377 YPA_3669 YPA_3670 IPR010398 Protein of unknown function DUF997 YPA_3671 IPR004549 Acetyl-CoA carboxylase, biotin carboxylase YPA_3671 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain YPA_3671 IPR005481 Carbamoyl-phosphate synthase, large subunit, N-terminal YPA_3671 IPR005482 Biotin carboxylase, C-terminal YPA_3671 IPR011054 Rudiment single hybrid motif YPA_3671 IPR013815 ATP-grasp fold, subdomain 1 YPA_3671 IPR016185 Pre-ATP-grasp domain YPA_3672 IPR000089 Biotin/lipoyl attachment YPA_3672 IPR001249 Acetyl-CoA biotin carboxyl carrier YPA_3672 IPR001882 Biotin-binding site YPA_3672 IPR011053 Single hybrid motif YPA_3673 IPR001874 Dehydroquinase, class II YPA_3673 IPR018509 Dehydroquinase, class II, conserved site YPA_3673 IPR036441 YPA_3673 YPA_3674 IPR013130 Ferric reductase transmembrane component-like domain YPA_3674 IPR022837 Sulphoxide reductase heme-binding subunit YedZ YPA_3675 IPR000572 Oxidoreductase, molybdopterin-binding domain YPA_3675 IPR022867 Sulphoxide reductase catalytic subunit YedY YPA_3675 IPR036374 YPA_3675 YPA_3676 IPR011032 GroES (chaperonin 10)-like YPA_3676 IPR013149 Alcohol dehydrogenase, C-terminal YPA_3676 IPR013154 Alcohol dehydrogenase GroES-like YPA_3676 IPR014188 Acrylyl-CoA reductase AcuI YPA_3676 IPR020843 Polyketide synthase, enoylreductase YPA_3676 IPR036291 YPA_3676 YPA_3677 IPR000160 GGDEF domain YPA_3677 IPR001633 EAL domain YPA_3677 IPR029787 Nucleotide cyclase YPA_3677 IPR033423 YPA_3677 YPA_3677 IPR035919 YPA_3677 YPA_3678 IPR004753 Cell shape determining protein MreB/Mrl YPA_3679 IPR007221 Rod shape-determining protein MreC YPA_3680 IPR007227 Cell shape-determining protein MreD YPA_3680 IPR026034 Cell shape-determining protein MreD, proteobacterial type YPA_3681 IPR003697 Maf-like protein YPA_3681 IPR029001 Inosine triphosphate pyrophosphatase-like YPA_3682 IPR003029 Ribosomal protein S1, RNA-binding domain YPA_3682 IPR004659 Ribonuclease E/G YPA_3682 IPR012340 Nucleic acid-binding, OB-fold YPA_3682 IPR019307 RNA-binding protein AU-1/Ribonuclease E/G YPA_3682 IPR022967 RNA-binding domain, S1 YPA_3683 IPR011836 Conserved hypothetical protein CHP02099 YPA_3683 IPR025263 Domain of unknown function DUF3971 YPA_3683 IPR032712 YPA_3683 YPA_3684 IPR001110 Uncharacterised protein family UPF0012, conserved site YPA_3684 IPR003010 Carbon-nitrogen hydrolase YPA_3684 IPR036526 YPA_3684 YPA_3685 IPR002510 TldD/PmbA YPA_3685 IPR025502 TldD YPA_3685 IPR035068 YPA_3685 YPA_3685 IPR036059 YPA_3685 YPA_3686 IPR006530 YD repeat YPA_3686 IPR016130 Protein-tyrosine phosphatase, active site YPA_3686 IPR022385 Rhs repeat-associated core YPA_3686 IPR029021 Protein-tyrosine phosphatase-like YPA_3687 IPR000340 Dual specificity phosphatase, catalytic domain YPA_3687 IPR006530 YD repeat YPA_3687 IPR016130 Protein-tyrosine phosphatase, active site YPA_3687 IPR022385 Rhs repeat-associated core YPA_3687 IPR029021 Protein-tyrosine phosphatase-like YPA_3688 IPR022538 Protein of unknown function DUF2570 YPA_3689 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain YPA_3689 IPR039561 YPA_3689 YPA_3690 IPR032126 YPA_3690 YPA_3691 IPR003284 Salmonella virulence plasmid 65kDa B protein YPA_3691 IPR022044 Insecticide toxin TcdB middle/C-terminal YPA_3691 IPR022045 Insecticide toxin TcdB middle/N-terminal YPA_3694 IPR018003 Insecticidal toxin complex/plasmid virulence protein YPA_3695 IPR000847 Transcription regulator HTH, LysR YPA_3695 IPR036388 YPA_3695 YPA_3695 IPR036390 YPA_3695 YPA_3696 IPR000847 Transcription regulator HTH, LysR YPA_3696 IPR005119 LysR, substrate-binding YPA_3696 IPR036388 YPA_3696 YPA_3696 IPR036390 YPA_3696 YPA_3697 IPR012451 Protein of unknown function DUF1656 YPA_3698 IPR006143 RND efflux pump, membrane fusion protein YPA_3698 IPR022871 Para-hydroxybenzoic acid efflux pump, subunit AaeA YPA_3698 IPR039562 YPA_3698 YPA_3699 IPR006726 Para-hydroxybenzoic acid efflux pump subunit AaeB/fusaric acid resistance protein YPA_3699 IPR023706 Para-hydroxybenzoic acid efflux pump, subunit AaeB YPA_3700 IPR015590 Aldehyde dehydrogenase domain YPA_3700 IPR016160 Aldehyde dehydrogenase, cysteine active site YPA_3700 IPR016161 Aldehyde/histidinol dehydrogenase YPA_3700 IPR016162 Aldehyde dehydrogenase, N-terminal YPA_3700 IPR016163 Aldehyde dehydrogenase, C-terminal YPA_3700 IPR029510 Aldehyde dehydrogenase, glutamic acid active site YPA_3701 IPR015590 Aldehyde dehydrogenase domain YPA_3701 IPR016161 Aldehyde/histidinol dehydrogenase YPA_3701 IPR016162 Aldehyde dehydrogenase, N-terminal YPA_3701 IPR016163 Aldehyde dehydrogenase, C-terminal YPA_3702 IPR000026 Guanine-specific ribonuclease N1/T1 YPA_3702 IPR001887 Barnase YPA_3702 IPR016191 Ribonuclease/ribotoxin YPA_3703 IPR000468 Barstar (barnase inhibitor) YPA_3703 IPR035905 YPA_3703 YPA_3704 IPR006839 Ribosome-associated, YjgA YPA_3704 IPR023153 PSPTO4464-like domain YPA_3705 IPR002510 TldD/PmbA YPA_3705 IPR035068 YPA_3705 YPA_3705 IPR036059 YPA_3705 YPA_3707 IPR009155 Cytochrome b562 YPA_3707 IPR010980 Cytochrome c/b562 YPA_3708 IPR001437 Transcription elongation factor, GreA/GreB, C-terminal YPA_3708 IPR023459 Transcription elongation factor GreA/GreB family YPA_3708 IPR028625 Regulator of nucleoside diphosphate kinase YPA_3708 IPR029462 Regulator of nucleoside diphosphate kinase, N-terminal domain YPA_3708 IPR036953 YPA_3708 YPA_3709 IPR006047 Glycosyl hydrolase, family 13, catalytic domain YPA_3709 IPR012769 Trehalose-6-phosphate hydrolase YPA_3709 IPR013780 Glycosyl hydrolase, family 13, all-beta YPA_3709 IPR017853 Glycoside hydrolase, superfamily YPA_3709 IPR022567 Domain of unknown function DUF3459 YPA_3710 IPR001996 Phosphotransferase system, IIB component, type 1 YPA_3710 IPR003352 Phosphotransferase system, EIIC YPA_3710 IPR011296 Phosphotransferase system, trehalose-specific IIBC component YPA_3710 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site YPA_3710 IPR036878 YPA_3710 YPA_3711 IPR000843 Transcription regulator HTH, LacI YPA_3711 IPR010982 Lambda repressor-like, DNA-binding domain YPA_3711 IPR012771 Trehalose operon repressor YPA_3711 IPR028082 Periplasmic binding protein-like I YPA_3712 IPR031948 YPA_3712 YPA_3712 IPR038643 YPA_3712 YPA_3713 IPR006056 Enamine/imine deaminase YjgF-like YPA_3713 IPR006175 YjgF/Yer057p/UK114 family YPA_3713 IPR019897 YjgF-like protein, conserved site YPA_3713 IPR035959 YPA_3713 YPA_3714 IPR002801 Aspartate transcarbamylase regulatory subunit YPA_3714 IPR020542 Aspartate carbamoyltransferase regulatory subunit, C-terminal YPA_3714 IPR020545 Aspartate carbamoyltransferase regulatory subunit, N-terminal YPA_3714 IPR036792 YPA_3714 YPA_3714 IPR036793 YPA_3714 YPA_3715 IPR002082 Aspartate carbamoyltransferase YPA_3715 IPR006130 Aspartate/ornithine carbamoyltransferase YPA_3715 IPR006131 Aspartate/ornithine carbamoyltransferase, Asp/Orn-binding domain YPA_3715 IPR006132 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding YPA_3715 IPR036901 YPA_3715 YPA_3716 IPR000032 Phosphocarrier HPr protein-like YPA_3716 IPR001020 Phosphotransferase system, HPr histidine phosphorylation site YPA_3716 IPR035895 YPA_3716 YPA_3717 IPR005337 ATPase, P-loop-containing YPA_3717 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPA_3718 IPR002178 PTS EIIA type-2 domain YPA_3718 IPR006320 Phosphotransferase system, IIA-like nitrogen-regulatory protein PtsN YPA_3718 IPR016152 Phosphotransferase/anion transporter YPA_3719 IPR003489 Ribosomal protein S30Ae/sigma 54 modulation protein YPA_3719 IPR036567 YPA_3719 YPA_3720 IPR003489 Ribosomal protein S30Ae/sigma 54 modulation protein YPA_3720 IPR036567 YPA_3720 YPA_3721 IPR000394 RNA polymerase sigma factor 54 YPA_3721 IPR007046 RNA polymerase sigma factor 54, core-binding YPA_3721 IPR007634 RNA polymerase sigma factor 54, DNA-binding YPA_3721 IPR038709 YPA_3721 YPA_3722 IPR003439 ABC transporter-like YPA_3722 IPR003593 AAA+ ATPase domain YPA_3722 IPR017871 ABC transporter, conserved site YPA_3722 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPA_3722 IPR030921 YPA_3722 YPA_3722 IPR032823 YPA_3722 YPA_3723 IPR005653 Organic solvent tolerance-like, N-terminal YPA_3723 IPR014340 Lipopolysaccharide assembly, LptA YPA_3724 IPR010664 Lipopolysaccharide assembly, LptC-related YPA_3724 IPR026265 Lipopolysaccharide export system protein LptC YPA_3725 IPR010023 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase YPA_3725 IPR023214 HAD-like domain YPA_3725 IPR036412 YPA_3725 YPA_3726 IPR000644 CBS domain YPA_3726 IPR001347 Sugar isomerase (SIS) YPA_3726 IPR004800 Phosphosugar isomerase, KdsD/KpsF-type YPA_3727 IPR004481 Sodium/potassium/calcium exchanger YPA_3727 IPR004837 Sodium/calcium exchanger membrane region YPA_3728 IPR003439 ABC transporter-like YPA_3728 IPR003593 AAA+ ATPase domain YPA_3728 IPR017871 ABC transporter, conserved site YPA_3728 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPA_3729 IPR003453 Permease domain YPA_3729 IPR030802 YPA_3729 YPA_3730 IPR003399 Mammalian cell entry-related YPA_3730 IPR030970 YPA_3730 YPA_3731 IPR008869 Toluene tolerance Ttg2/phospholipid-binding protein MlaC YPA_3732 IPR002645 STAS domain YPA_3732 IPR036513 YPA_3732 YPA_3733 IPR002634 BolA protein YPA_3733 IPR036065 YPA_3733 YPA_3734 IPR001986 Enolpyruvate transferase domain YPA_3734 IPR005750 UDP-N-acetylglucosamine 1-carboxyvinyltransferase YPA_3734 IPR013792 RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta YPA_3734 IPR036968 YPA_3734 YPA_3735 IPR001478 PDZ domain YPA_3735 IPR001940 Peptidase S1C YPA_3735 IPR009003 Trypsin-like cysteine/serine peptidase domain YPA_3735 IPR011783 Peptidase S1C, DegS YPA_3735 IPR036034 YPA_3735 YPA_3736 IPR002686 Transposase IS200-like YPA_3736 IPR036515 YPA_3736 YPA_3737 IPR001478 PDZ domain YPA_3737 IPR001940 Peptidase S1C YPA_3737 IPR009003 Trypsin-like cysteine/serine peptidase domain YPA_3737 IPR011782 Peptidase S1C, Do YPA_3737 IPR036034 YPA_3737 YPA_3738 IPR009386 Protein of unknown function DUF1043 YPA_3739 IPR005654 ATPase, AFG1-like YPA_3739 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPA_3739 IPR030870 YPA_3739 YPA_3740 IPR005822 Ribosomal protein L13 YPA_3740 IPR005823 Ribosomal protein L13, bacterial-type YPA_3740 IPR023563 Ribosomal protein L13, conserved site YPA_3740 IPR036899 YPA_3740 YPA_3741 IPR000754 Ribosomal protein S9 YPA_3741 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup YPA_3741 IPR020568 Ribosomal protein S5 domain 2-type fold YPA_3741 IPR020574 Ribosomal protein S9, conserved site YPA_3741 IPR023035 Ribosomal protein S9, bacterial/plastid YPA_3742 IPR004045 Glutathione S-transferase, N-terminal YPA_3742 IPR004046 Glutathione S-transferase, C-terminal YPA_3742 IPR036249 YPA_3742 YPA_3742 IPR036282 YPA_3742 YPA_3743 IPR007481 Stringent starvation protein B YPA_3743 IPR036760 YPA_3743 YPA_3745 IPR006006 Glutamate synthase, NADH/NADPH, small subunit 2 YPA_3745 IPR009051 Alpha-helical ferredoxin YPA_3745 IPR023753 Pyridine nucleotide-disulphide oxidoreductase, FAD/NAD(P)-binding domain YPA_3745 IPR028261 Dihydroprymidine dehydrogenase domain II YPA_3745 IPR036188 YPA_3745 YPA_3746 IPR002489 Glutamate synthase, alpha subunit, C-terminal YPA_3746 IPR002932 Glutamate synthase domain YPA_3746 IPR006982 Glutamate synthase, central-N YPA_3746 IPR013785 Aldolase-type TIM barrel YPA_3746 IPR017932 Glutamine amidotransferase type 2 domain YPA_3746 IPR029055 Nucleophile aminohydrolases, N-terminal YPA_3746 IPR036485 YPA_3746 YPA_3747 IPR005911 Conserved hypothetical protein CHP01212 YPA_3747 IPR006638 Elongator protein 3/MiaB/NifB YPA_3747 IPR007197 Radical SAM YPA_3747 IPR023404 Radical SAM, alpha/beta horseshoe YPA_3747 IPR032432 YPA_3747 YPA_3748 IPR000014 PAS domain YPA_3748 IPR001789 Signal transduction response regulator, receiver domain YPA_3748 IPR003594 Histidine kinase-like ATPase, C-terminal domain YPA_3748 IPR003661 Signal transduction histidine kinase EnvZ-like, dimerisation/phosphoacceptor domain YPA_3748 IPR004358 Signal transduction histidine kinase-related protein, C-terminal YPA_3748 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain YPA_3748 IPR011006 CheY-like superfamily YPA_3748 IPR013767 PAS fold YPA_3748 IPR014409 Signal transduction histidine kinase, hybrid-type, aerobic respiration control ArcB YPA_3748 IPR027460 Aerobic respiration control sensor protein ArcB, transmembrane domain YPA_3748 IPR035965 YPA_3748 YPA_3748 IPR036097 YPA_3748 YPA_3748 IPR036641 YPA_3748 YPA_3748 IPR036890 YPA_3748 YPA_3749 IPR026041 Enhancing lycopene biosynthesis protein 2 YPA_3749 IPR029062 Class I glutamine amidotransferase-like YPA_3750 IPR001264 Glycosyl transferase, family 51 YPA_3750 IPR011812 Monofunctional biosynthetic peptidoglycan transglycosylase YPA_3750 IPR023346 Lysozyme-like domain YPA_3750 IPR036950 YPA_3750 YPA_3751 IPR007055 BON domain YPA_3751 IPR014004 Transport-associated and nodulation domain, bacteria YPA_3752 IPR001347 Sugar isomerase (SIS) YPA_3752 IPR023070 DnaA initiator-associating protein YPA_3753 IPR003509 Uncharacterised protein family UPF0102 YPA_3753 IPR011335 Restriction endonuclease type II-like YPA_3753 IPR011856 tRNA endonuclease-like domain YPA_3754 IPR007443 Penicillin-binding protein activator LpoA YPA_3754 IPR011990 Tetratricopeptide-like helical domain YPA_3754 IPR028082 Periplasmic binding protein-like I YPA_3755 IPR000878 Tetrapyrrole methylase YPA_3755 IPR008189 rRNA small subunit methyltransferase I YPA_3755 IPR014776 Tetrapyrrole methylase, subdomain 2 YPA_3755 IPR014777 Tetrapyrrole methylase, subdomain 1 YPA_3755 IPR018063 SAM-dependent methyltransferase RsmI, conserved site YPA_3755 IPR035996 YPA_3755 YPA_3756 IPR003829 Pirin, N-terminal domain YPA_3756 IPR011051 RmlC-like cupin domain YPA_3756 IPR012093 Pirin YPA_3756 IPR014710 RmlC-like jelly roll fold YPA_3757 IPR000847 Transcription regulator HTH, LysR YPA_3757 IPR005119 LysR, substrate-binding YPA_3757 IPR036388 YPA_3757 YPA_3757 IPR036390 YPA_3757 YPA_3758 IPR004045 Glutathione S-transferase, N-terminal YPA_3758 IPR016639 Glutathione S-transferase (GST) YPA_3758 IPR036249 YPA_3758 YPA_3758 IPR036282 YPA_3758 YPA_3759 IPR001270 ClpA/B family YPA_3759 IPR002611 IstB-like ATP-binding protein YPA_3759 IPR003593 AAA+ ATPase domain YPA_3759 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPA_3759 IPR028350 DNA replication protein DnaC/insertion sequence putative ATP-binding protein YPA_3760 IPR001584 Integrase, catalytic core YPA_3760 IPR006120 Resolvase, HTH domain YPA_3760 IPR009057 Homeodomain-like YPA_3760 IPR012337 Ribonuclease H-like domain YPA_3761 IPR009057 Homeodomain-like YPA_3762 IPR001584 Integrase, catalytic core YPA_3762 IPR012337 Ribonuclease H-like domain YPA_3762 IPR025948 HTH-like domain YPA_3762 IPR036397 YPA_3762 YPA_3764 IPR010351 Protein of unknown function DUF943 YPA_3766 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase YPA_3766 IPR006076 FAD dependent oxidoreductase YPA_3766 IPR031656 YPA_3766 YPA_3766 IPR036188 YPA_3766 YPA_3766 IPR038299 YPA_3766 YPA_3767 IPR000811 Glycosyl transferase, family 35 YPA_3767 IPR011833 Glycogen/starch/alpha-glucan phosphorylase YPA_3767 IPR035090 YPA_3767 YPA_3768 IPR001296 Glycosyl transferase, family 1 YPA_3768 IPR011835 Glycogen/starch synthase, ADP-glucose type YPA_3768 IPR013534 Starch synthase, catalytic domain YPA_3769 IPR005835 Nucleotidyl transferase YPA_3769 IPR005836 ADP-glucose pyrophosphorylase, conserved site YPA_3769 IPR011004 Trimeric LpxA-like YPA_3769 IPR011831 Glucose-1-phosphate adenylyltransferase YPA_3769 IPR023049 Glucose-1-phosphate adenylyltransferase GlgC, bacterial YPA_3769 IPR029044 Nucleotide-diphospho-sugar transferases YPA_3770 IPR004193 Glycoside hydrolase, family 13, N-terminal YPA_3770 IPR006047 Glycosyl hydrolase, family 13, catalytic domain YPA_3770 IPR011837 Glycogen debranching enzyme, GlgX type YPA_3770 IPR013780 Glycosyl hydrolase, family 13, all-beta YPA_3770 IPR013783 Immunoglobulin-like fold YPA_3770 IPR014756 Immunoglobulin E-set YPA_3770 IPR017853 Glycoside hydrolase, superfamily YPA_3770 IPR022844 Glycogen debranching enzyme, bacterial YPA_3771 IPR004193 Glycoside hydrolase, family 13, N-terminal YPA_3771 IPR006047 Glycosyl hydrolase, family 13, catalytic domain YPA_3771 IPR006048 Alpha-amylase, C-terminal all beta YPA_3771 IPR006407 1,4-alpha-glucan-branching enzyme, GlgB YPA_3771 IPR013780 Glycosyl hydrolase, family 13, all-beta YPA_3771 IPR013783 Immunoglobulin-like fold YPA_3771 IPR014756 Immunoglobulin E-set YPA_3771 IPR017853 Glycoside hydrolase, superfamily YPA_3771 IPR037439 YPA_3771 YPA_3772 IPR010559 Signal transduction histidine kinase, internal region YPA_3772 IPR011620 Signal transduction histidine kinase, 5TM receptor LytS, transmembrane region YPA_3772 IPR036890 YPA_3772 YPA_3773 IPR003344 Bacterial Ig-like, group 1 YPA_3773 IPR003535 Intimin/invasin bacterial adhesion mediator protein YPA_3773 IPR008964 Invasin/intimin cell-adhesion YPA_3773 IPR013783 Immunoglobulin-like fold YPA_3773 IPR018392 LysM domain YPA_3773 IPR024519 Domain of unknown function DUF3442, intimin/invasin YPA_3773 IPR036779 YPA_3773 YPA_3773 IPR038177 YPA_3773 YPA_3777 IPR000319 Aspartate-semialdehyde dehydrogenase, conserved site YPA_3777 IPR000534 Semialdehyde dehydrogenase, NAD-binding YPA_3777 IPR011534 Aspartate-semialdehyde dehydrogenase, gamma-type YPA_3777 IPR012080 Aspartate-semialdehyde dehydrogenase YPA_3777 IPR012280 Semialdehyde dehydrogenase, dimerisation domain YPA_3777 IPR036291 YPA_3777 YPA_3778 IPR002771 Multiple antibiotic resistance (MarC)-related YPA_3782 IPR006001 Carbohydrate kinase, thermoresistant glucokinase YPA_3782 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPA_3782 IPR031322 YPA_3782 YPA_3783 IPR003474 Gluconate transporter YPA_3784 IPR000843 Transcription regulator HTH, LacI YPA_3784 IPR001761 Periplasmic binding protein/LacI sugar binding domain YPA_3784 IPR010982 Lambda repressor-like, DNA-binding domain YPA_3784 IPR028082 Periplasmic binding protein-like I YPA_3785 IPR003829 Pirin, N-terminal domain YPA_3785 IPR011051 RmlC-like cupin domain YPA_3785 IPR012093 Pirin YPA_3785 IPR014710 RmlC-like jelly roll fold YPA_3786 IPR001789 Signal transduction response regulator, receiver domain YPA_3786 IPR001867 Signal transduction response regulator, C-terminal YPA_3786 IPR011006 CheY-like superfamily YPA_3786 IPR016032 Signal transduction response regulator, C-terminal effector YPA_3786 IPR036388 YPA_3786 YPA_3787 IPR011611 Carbohydrate kinase PfkB YPA_3787 IPR029056 Ribokinase-like YPA_3788 IPR000771 Ketose-bisphosphate aldolase, class-II YPA_3788 IPR013785 Aldolase-type TIM barrel YPA_3789 IPR010864 Protein of unknown function DUF1498 YPA_3789 IPR011051 RmlC-like cupin domain YPA_3789 IPR014710 RmlC-like jelly roll fold YPA_3790 IPR025997 Periplasmic binding protein domain YPA_3790 IPR028082 Periplasmic binding protein-like I YPA_3791 IPR001851 ABC transporter, permease YPA_3792 IPR003439 ABC transporter-like YPA_3792 IPR003593 AAA+ ATPase domain YPA_3792 IPR017871 ABC transporter, conserved site YPA_3792 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPA_3793 IPR001789 Signal transduction response regulator, receiver domain YPA_3793 IPR003594 Histidine kinase-like ATPase, C-terminal domain YPA_3793 IPR003660 HAMP linker domain YPA_3793 IPR003661 Signal transduction histidine kinase EnvZ-like, dimerisation/phosphoacceptor domain YPA_3793 IPR004358 Signal transduction histidine kinase-related protein, C-terminal YPA_3793 IPR011006 CheY-like superfamily YPA_3793 IPR035965 YPA_3793 YPA_3793 IPR036097 YPA_3793 YPA_3793 IPR036890 YPA_3793 YPA_3794 IPR004792 Conserved hypothetical protein CHP00275, flavoprotein HI0933-like YPA_3794 IPR023166 HI0933 insert-like domain YPA_3794 IPR036188 YPA_3794 YPA_3795 IPR001204 Phosphate transporter YPA_3796 IPR002686 Transposase IS200-like YPA_3796 IPR036515 YPA_3796 YPA_3797 IPR019598 Universal stress protein B YPA_3798 IPR006015 Universal stress protein A YPA_3798 IPR006016 UspA YPA_3798 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold YPA_3799 IPR006095 Glutamate/phenylalanine/leucine/valine dehydrogenase YPA_3799 IPR006096 Glutamate/phenylalanine/leucine/valine dehydrogenase, C-terminal YPA_3799 IPR006097 Glutamate/phenylalanine/leucine/valine dehydrogenase, dimerisation domain YPA_3799 IPR014362 Glutamate dehydrogenase YPA_3799 IPR033524 YPA_3799 YPA_3799 IPR036291 YPA_3799 YPA_3800 IPR006026 Peptidase, metallopeptidase YPA_3800 IPR011049 Serralysin-like metalloprotease, C-terminal YPA_3800 IPR013858 Peptidase M10 serralysin C-terminal domain YPA_3800 IPR016294 Peptidase M10B YPA_3800 IPR019960 Type I secretion C-terminal target domain, VC_A0849 subclass YPA_3800 IPR024079 Metallopeptidase, catalytic domain YPA_3801 IPR007536 Ribosomal RNA small subunit methyltransferase J YPA_3801 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase-like YPA_3802 IPR001567 Peptidase M3A/M3B YPA_3802 IPR024077 Neurolysin/Thimet oligopeptidase, domain 2 YPA_3804 IPR002052 DNA methylase, N-6 adenine-specific, conserved site YPA_3804 IPR007473 Ribosomal RNA large subunit methyltransferase J YPA_3804 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase-like YPA_3805 IPR001100 YPA_3805 YPA_3805 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain YPA_3805 IPR006322 Glutathione reductase, eukaryote/bacterial YPA_3805 IPR012999 Pyridine nucleotide-disulphide oxidoreductase, class I, active site YPA_3805 IPR016156 FAD/NAD-linked reductase, dimerisation domain YPA_3805 IPR023753 Pyridine nucleotide-disulphide oxidoreductase, FAD/NAD(P)-binding domain YPA_3805 IPR036188 YPA_3805 YPA_3806 IPR008599 Putative sugar diacid recognition YPA_3806 IPR025736 PucR C-terminal helix-turn-helix domain YPA_3807 IPR003474 Gluconate transporter YPA_3808 IPR004381 Glycerate kinase YPA_3808 IPR018193 Glycerate kinase, flavodoxin-like domain YPA_3808 IPR018197 Glycerate kinase, restriction-enzyme-like fold YPA_3808 IPR036129 YPA_3808 YPA_3809 IPR010351 Protein of unknown function DUF943 YPA_3810 IPR010351 Protein of unknown function DUF943 YPA_3811 IPR017483 Conserved hypothetical protein CHP03034 YPA_3812 IPR004899 Pertactin, central region YPA_3812 IPR005546 Autotransporter beta-domain YPA_3812 IPR006315 Outer membrane autotransporter barrel YPA_3812 IPR011050 Pectin lyase fold/virulence factor YPA_3812 IPR012332 P22 tailspike C-terminal domain-like YPA_3812 IPR036709 YPA_3812 YPA_3813 IPR005274 Inner membrane protein YhjD YPA_3813 IPR017039 Virulence factor BrkB YPA_3814 IPR003763 CDP-diacylglycerol pyrophosphatase YPA_3814 IPR036265 YPA_3814 YPA_3814 IPR038433 YPA_3814 YPA_3815 IPR007844 AsmA YPA_3816 IPR001633 EAL domain YPA_3816 IPR035919 YPA_3816 YPA_3817 IPR004370 4-oxalocrotonate tautomerase YPA_3817 IPR014347 Tautomerase/MIF superfamily YPA_3817 IPR018191 4-oxalocrotonate tautomerase, Pseudomonas-type YPA_3818 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site YPA_3818 IPR011611 Carbohydrate kinase PfkB YPA_3818 IPR029056 Ribokinase-like YPA_3819 IPR007863 Peptidase M16, C-terminal domain YPA_3819 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like YPA_3819 IPR011765 Peptidase M16, N-terminal YPA_3820 IPR001991 Sodium:dicarboxylate symporter YPA_3820 IPR018107 Sodium:dicarboxylate symporter, conserved site YPA_3820 IPR023954 C4-dicarboxylate transport protein YPA_3820 IPR036458 YPA_3820 YPA_3821 IPR000421 Coagulation factor 5/8 C-terminal type domain YPA_3821 IPR008979 Galactose-binding domain-like YPA_3822 IPR010702 Periplasmic pectate lyase YPA_3823 IPR009331 Oligogalacturonate-specific porin YPA_3824 IPR000160 GGDEF domain YPA_3824 IPR001633 EAL domain YPA_3824 IPR029787 Nucleotide cyclase YPA_3824 IPR033419 YPA_3824 YPA_3824 IPR035919 YPA_3824 YPA_3825 IPR002037 Glycoside hydrolase, family 8 YPA_3825 IPR008928 Six-hairpin glycosidase-like YPA_3825 IPR012341 Six-hairpin glycosidase YPA_3826 IPR003439 ABC transporter-like YPA_3826 IPR003593 AAA+ ATPase domain YPA_3826 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal YPA_3826 IPR017871 ABC transporter, conserved site YPA_3826 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPA_3827 IPR003439 ABC transporter-like YPA_3827 IPR003593 AAA+ ATPase domain YPA_3827 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal YPA_3827 IPR017871 ABC transporter, conserved site YPA_3827 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPA_3828 IPR000515 MetI-like domain YPA_3828 IPR025966 Oligopeptide transport permease C-like, N-terminal domain YPA_3828 IPR035906 YPA_3828 YPA_3829 IPR000515 MetI-like domain YPA_3829 IPR035906 YPA_3829 YPA_3830 IPR000914 Bacterial extracellular solute-binding protein, family 5 YPA_3830 IPR023765 Bacterial extracellular solute-binding protein, family 5, conserved site YPA_3830 IPR030678 YPA_3830 YPA_3831 IPR005565 Haemolysin activator HlyB YPA_3831 IPR013686 Polypeptide-transport-associated, ShlB-type YPA_3831 IPR027282 Two partner secretion pathway transporter YPA_3831 IPR035251 YPA_3831 YPA_3832 IPR008638 Filamentous haemagglutinin, N-terminal YPA_3832 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat YPA_3832 IPR011050 Pectin lyase fold/virulence factor YPA_3832 IPR012334 Pectin lyase fold YPA_3833 IPR002686 Transposase IS200-like YPA_3833 IPR036515 YPA_3833 YPA_3834 IPR000849 Sugar phosphate transporter YPA_3834 IPR011701 Major facilitator superfamily YPA_3834 IPR036259 YPA_3834 YPA_3835 IPR003594 Histidine kinase-like ATPase, C-terminal domain YPA_3835 IPR011712 Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain YPA_3835 IPR036890 YPA_3835 YPA_3836 IPR001270 ClpA/B family YPA_3836 IPR002611 IstB-like ATP-binding protein YPA_3836 IPR003593 AAA+ ATPase domain YPA_3836 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPA_3836 IPR028350 DNA replication protein DnaC/insertion sequence putative ATP-binding protein YPA_3837 IPR001584 Integrase, catalytic core YPA_3837 IPR006120 Resolvase, HTH domain YPA_3837 IPR009057 Homeodomain-like YPA_3837 IPR012337 Ribonuclease H-like domain YPA_3838 IPR003439 ABC transporter-like YPA_3838 IPR003593 AAA+ ATPase domain YPA_3838 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPA_3839 IPR003812 Fido domain YPA_3839 IPR025230 Domain of unknown function DUF4172 YPA_3839 IPR036388 YPA_3839 YPA_3839 IPR036597 YPA_3839 YPA_3840 IPR001387 Cro/C1-type helix-turn-helix domain YPA_3840 IPR004821 Cytidyltransferase-like domain YPA_3840 IPR006417 Nicotinamide-nucleotide adenylyltransferase YPA_3840 IPR010982 Lambda repressor-like, DNA-binding domain YPA_3840 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold YPA_3840 IPR016429 Bifunctional transcriptional regulator NadR YPA_3840 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPA_3840 IPR038727 YPA_3840 YPA_3841 IPR003593 AAA+ ATPase domain YPA_3841 IPR004504 DNA repair protein RadA YPA_3841 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup YPA_3841 IPR020568 Ribosomal protein S5 domain 2-type fold YPA_3841 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPA_3842 IPR023190 Phosphoserine phosphatase, domain 2 YPA_3842 IPR023214 HAD-like domain YPA_3842 IPR036412 YPA_3842 YPA_3843 IPR019305 Uncharacterised protein family Smp YPA_3844 IPR000845 Nucleoside phosphorylase domain YPA_3844 IPR004402 Purine nucleoside phosphorylase DeoD-type YPA_3844 IPR018016 Nucleoside phosphorylase, conserved site YPA_3844 IPR035994 YPA_3844 YPA_3845 IPR006124 Metalloenzyme YPA_3845 IPR010045 Phosphopentomutase YPA_3845 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha YPA_3845 IPR017850 Alkaline-phosphatase-like, core domain YPA_3845 IPR024052 Phosphopentomutase DeoB cap domain YPA_3846 IPR000312 Glycosyl transferase, family 3 YPA_3846 IPR013102 Pyrimidine nucleoside phosphorylase, C-terminal YPA_3846 IPR035902 YPA_3846 YPA_3846 IPR036566 YPA_3846 YPA_3847 IPR000312 Glycosyl transferase, family 3 YPA_3847 IPR017459 Glycosyl transferase family 3, N-terminal domain YPA_3847 IPR017872 Pyrimidine-nucleoside phosphorylase, conserved site YPA_3847 IPR035902 YPA_3847 YPA_3847 IPR036320 YPA_3847 YPA_3848 IPR002915 DeoC/FbaB/ lacD aldolase YPA_3848 IPR011343 Deoxyribose-phosphate aldolase YPA_3848 IPR013785 Aldolase-type TIM barrel YPA_3848 IPR023649 Deoxyribose-phosphate aldolase type II YPA_3849 IPR002668 Concentrative nucleoside transporter N-terminal domain YPA_3849 IPR011642 Nucleoside recognition Gate YPA_3849 IPR011657 Concentrative nucleoside transporter C-terminal domain YPA_3849 IPR018270 Concentrative nucleoside transporter, metazoan/bacterial YPA_3850 IPR001130 TatD family YPA_3850 IPR018228 Deoxyribonuclease, TatD-related, conserved site YPA_3850 IPR032466 YPA_3850 YPA_3851 IPR002641 Patatin/Phospholipase A2-related YPA_3851 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase YPA_3852 IPR009760 Protein of unknown function DUF1328 YPA_3853 IPR007055 BON domain YPA_3853 IPR014004 Transport-associated and nodulation domain, bacteria YPA_3854 IPR000795 Elongation factor, GTP-binding domain YPA_3854 IPR004161 Translation elongation factor EFTu/EF1A, domain 2 YPA_3854 IPR004548 Peptide chain release factor 3 YPA_3854 IPR005225 Small GTP-binding protein domain YPA_3854 IPR009000 Translation protein, beta-barrel domain YPA_3854 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPA_3854 IPR031157 YPA_3854 YPA_3854 IPR032090 YPA_3854 YPA_3854 IPR035647 YPA_3854 YPA_3854 IPR038467 YPA_3854 YPA_3855 IPR000182 GNAT domain YPA_3855 IPR006464 Ribosomal-protein-alanine acetyltransferase YPA_3855 IPR016181 Acyl-CoA N-acyltransferase YPA_3856 IPR004615 DNA polymerase III, psi subunit YPA_3856 IPR036654 YPA_3856 YPA_3857 IPR002052 DNA methylase, N-6 adenine-specific, conserved site YPA_3857 IPR007848 Methyltransferase small domain YPA_3857 IPR013675 Methyltransferase small, N-terminal YPA_3857 IPR023543 rRNA small subunit methyltransferase C YPA_3857 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase-like YPA_3859 IPR009885 Protein of unknown function DUF1435 YPA_3860 IPR000160 GGDEF domain YPA_3860 IPR029787 Nucleotide cyclase YPA_3861 IPR000070 Pectinesterase, catalytic YPA_3861 IPR011050 Pectin lyase fold/virulence factor YPA_3861 IPR012334 Pectin lyase fold YPA_3864 IPR001036 Acriflavin resistance protein YPA_3864 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains YPA_3865 IPR003997 RTX secretion protein D, Gram-negative bacteria YPA_3865 IPR006143 RND efflux pump, membrane fusion protein YPA_3865 IPR032317 YPA_3865 YPA_3866 IPR010445 Protein of unknown function DUF1049 YPA_3867 IPR007016 O-antigen ligase-related YPA_3868 IPR002201 Glycosyl transferase, family 9 YPA_3868 IPR011916 Lipopolysaccharide heptosyltransferase III, putative YPA_3869 IPR000577 YPA_3869 YPA_3869 IPR018484 Carbohydrate kinase, FGGY, N-terminal YPA_3869 IPR018485 Carbohydrate kinase, FGGY, C-terminal YPA_3869 IPR033676 YPA_3869 YPA_3870 IPR007324 Sugar-binding domain, putative YPA_3870 IPR037171 YPA_3870 YPA_3871 IPR012318 Helix-turn-helix motif, Crp-type YPA_3871 IPR036388 YPA_3871 YPA_3873 IPR003439 ABC transporter-like YPA_3873 IPR003593 AAA+ ATPase domain YPA_3873 IPR017871 ABC transporter, conserved site YPA_3873 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPA_3874 IPR001851 ABC transporter, permease YPA_3875 IPR001851 ABC transporter, permease YPA_3876 IPR025997 Periplasmic binding protein domain YPA_3876 IPR028082 Periplasmic binding protein-like I YPA_3877 IPR002915 DeoC/FbaB/ lacD aldolase YPA_3877 IPR013785 Aldolase-type TIM barrel YPA_3877 IPR033673 YPA_3877 YPA_3878 IPR007138 Antibiotic biosynthesis monooxygenase-like domain YPA_3878 IPR011008 Dimeric alpha-beta barrel YPA_3878 IPR033672 YPA_3878 YPA_3879 IPR019637 Protein of unknown function DUF2501 YPA_3880 IPR000032 Phosphocarrier HPr protein-like YPA_3880 IPR000121 PEP-utilising enzyme, C-terminal YPA_3880 IPR001020 Phosphotransferase system, HPr histidine phosphorylation site YPA_3880 IPR002178 PTS EIIA type-2 domain YPA_3880 IPR006318 Phosphoenolpyruvate-utilising enzyme YPA_3880 IPR008279 PEP-utilising enzyme, mobile domain YPA_3880 IPR008731 Phosphotransferase system, enzyme I N-terminal YPA_3880 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain YPA_3880 IPR016152 Phosphotransferase/anion transporter YPA_3880 IPR018274 PEP-utilising enzyme, active site YPA_3880 IPR023151 PEP-utilising enzyme, conserved site YPA_3880 IPR035895 YPA_3880 YPA_3880 IPR036618 YPA_3880 YPA_3880 IPR036637 YPA_3880 YPA_3881 IPR003352 Phosphotransferase system, EIIC YPA_3881 IPR006327 Phosphotransferase system, fructose IIC component YPA_3882 IPR003353 Phosphotransferase system, fructose-specific IIB subunit YPA_3882 IPR003501 Phosphotransferase system, EIIB component, type 2/3 YPA_3882 IPR036095 YPA_3882 YPA_3883 IPR003353 Phosphotransferase system, fructose-specific IIB subunit YPA_3883 IPR003501 Phosphotransferase system, EIIB component, type 2/3 YPA_3883 IPR036095 YPA_3883 YPA_3884 IPR009057 Homeodomain-like YPA_3884 IPR018060 DNA binding HTH domain, AraC-type YPA_3884 IPR018062 HTH domain AraC-type, conserved site YPA_3884 IPR020449 Transcription regulator HTH, AraC- type YPA_3886 IPR010295 Protein of unknown function DUF898 YPA_3887 IPR001915 Peptidase M48 YPA_3888 IPR014544 Uncharacterised conserved protein UCP028408 YPA_3888 IPR024534 Domain of unknown function DUF2220 YPA_3888 IPR024537 Domain of unknown function DUF3322 YPA_3892 IPR036890 YPA_3892 YPA_3893 IPR002941 DNA methylase N-4/N-6 YPA_3893 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase-like YPA_3896 IPR019292 5-methylcytosine restriction system component YPA_3897 IPR003593 AAA+ ATPase domain YPA_3897 IPR011704 ATPase, dynein-related, AAA domain YPA_3897 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPA_3898 IPR001584 Integrase, catalytic core YPA_3898 IPR006120 Resolvase, HTH domain YPA_3898 IPR009057 Homeodomain-like YPA_3898 IPR012337 Ribonuclease H-like domain YPA_3899 IPR001270 ClpA/B family YPA_3899 IPR002611 IstB-like ATP-binding protein YPA_3899 IPR003593 AAA+ ATPase domain YPA_3899 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPA_3899 IPR028350 DNA replication protein DnaC/insertion sequence putative ATP-binding protein YPA_3901 IPR010854 Domain of unknown function DUF1471 YPA_3901 IPR025543 Dodecin-like YPA_3901 IPR036275 YPA_3901 YPA_3902 IPR006089 Acyl-CoA dehydrogenase, conserved site YPA_3902 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain YPA_3902 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal YPA_3902 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain YPA_3902 IPR036250 YPA_3902 YPA_3903 IPR001537 tRNA/rRNA methyltransferase, SpoU type YPA_3903 IPR004441 RNA methyltransferase TrmH family YPA_3903 IPR013123 RNA 2-O ribose methyltransferase, substrate binding YPA_3903 IPR024915 23S rRNA (guanosine-2-O-)-methyltransferase RlmB YPA_3903 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal YPA_3903 IPR029028 Alpha/beta knot methyltransferases YPA_3903 IPR029064 50S ribosomal protein L30e-like YPA_3904 IPR001900 YPA_3904 YPA_3904 IPR003029 Ribosomal protein S1, RNA-binding domain YPA_3904 IPR004476 Ribonuclease II/ribonuclease R YPA_3904 IPR011129 Cold shock protein YPA_3904 IPR011805 Ribonuclease R YPA_3904 IPR012340 Nucleic acid-binding, OB-fold YPA_3904 IPR013223 Ribonuclease B, N-terminal OB domain YPA_3904 IPR013668 Ribonuclease R winged-helix domain YPA_3904 IPR022967 RNA-binding domain, S1 YPA_3905 IPR000944 Transcription regulator Rrf2-like YPA_3905 IPR023761 Transcriptional repressor HTH, NsrR YPA_3905 IPR030489 YPA_3905 YPA_3905 IPR036388 YPA_3905 YPA_3905 IPR036390 YPA_3905 YPA_3906 IPR001114 Adenylosuccinate synthetase YPA_3906 IPR018220 Adenylosuccinate synthase, active site YPA_3906 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPA_3906 IPR033128 YPA_3906 YPA_3907 IPR019201 Protein of unknown function DUF2065 YPA_3908 IPR001107 Band 7 protein YPA_3908 IPR010200 HflC YPA_3908 IPR036013 YPA_3908 YPA_3909 IPR001107 Band 7 protein YPA_3909 IPR001972 Stomatin family YPA_3909 IPR010201 HflK YPA_3909 IPR020980 Menbrane protein HflK, N-terminal YPA_3909 IPR036013 YPA_3909 YPA_3910 IPR006073 GTP binding domain YPA_3910 IPR016496 GTPase HflX YPA_3910 IPR025121 GTPase HflX N-terminal domain YPA_3910 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPA_3910 IPR032305 YPA_3910 YPA_3910 IPR035647 YPA_3910 YPA_3911 IPR005001 Host factor Hfq YPA_3911 IPR010920 Like-Sm (LSM) domain YPA_3912 IPR018022 tRNA delta(2)-isopentenylpyrophosphate transferase YPA_3912 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPA_3913 IPR002099 DNA mismatch repair protein family YPA_3913 IPR013507 DNA mismatch repair protein, C-terminal YPA_3913 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup YPA_3913 IPR014762 DNA mismatch repair, conserved site YPA_3913 IPR014790 MutL, C-terminal, dimerisation YPA_3913 IPR020568 Ribosomal protein S5 domain 2-type fold YPA_3913 IPR020667 DNA mismatch repair protein, MutL YPA_3913 IPR036890 YPA_3913 YPA_3913 IPR037198 YPA_3913 YPA_3914 IPR002508 Cell wall hydrolase/autolysin, catalytic YPA_3914 IPR018392 LysM domain YPA_3914 IPR021731 AMIN domain YPA_3914 IPR036779 YPA_3914 YPA_3915 IPR003442 tRNA threonylcarbamoyl adenosine modification protein TsaE YPA_3915 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPA_3916 IPR000631 YjeF C-terminal domain YPA_3916 IPR004443 YjeF N-terminal domain YPA_3916 IPR029056 Ribokinase-like YPA_3916 IPR030677 YPA_3916 YPA_3916 IPR036652 YPA_3916 YPA_3917 IPR004453 Epoxyqueuosine reductase QueG YPA_3917 IPR009051 Alpha-helical ferredoxin YPA_3917 IPR013542 Domain of unknown function DUF1730 YPA_3917 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site YPA_3918 IPR012337 Ribonuclease H-like domain YPA_3918 IPR013520 Exonuclease, RNase T/DNA polymerase III YPA_3918 IPR022894 Oligoribonuclease YPA_3918 IPR036397 YPA_3918 YPA_3919 IPR004881 Ribosome biogenesis GTPase RsgA, putative YPA_3919 IPR010914 EngC GTPase YPA_3919 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPA_3920 IPR003817 Phosphatidylserine decarboxylase-related YPA_3920 IPR033177 YPA_3920 YPA_3920 IPR033178 YPA_3920 YPA_3921 IPR006685 Mechanosensitive ion channel MscS YPA_3921 IPR006686 Mechanosensitive ion channel MscS, conserved site YPA_3921 IPR010920 Like-Sm (LSM) domain YPA_3921 IPR011014 Mechanosensitive ion channel MscS, transmembrane-2 YPA_3921 IPR011066 Mechanosensitive ion channel MscS, C-terminal YPA_3921 IPR023408 YPA_3921 YPA_3921 IPR024393 Mechanosensitive ion channel MscS, porin domain YPA_3921 IPR025692 Mechanosensitive ion channel inner membrane domain 1 YPA_3922 IPR004364 Aminoacyl-tRNA synthetase, class II (D/K/N) YPA_3922 IPR004525 Elongation factor P--(R)-beta-lysine ligase YPA_3922 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal YPA_3923 IPR003952 Fumarate reductase/succinate dehydrogenase, FAD-binding site YPA_3923 IPR003953 FAD binding domain YPA_3923 IPR005884 Fumarate reductase, flavoprotein subunit YPA_3923 IPR014006 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit YPA_3923 IPR015939 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal YPA_3923 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain YPA_3923 IPR036188 YPA_3923 YPA_3923 IPR037099 YPA_3923 YPA_3924 IPR004489 Succinate dehydrogenase/fumarate reductase iron-sulphur protein YPA_3924 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site YPA_3924 IPR009051 Alpha-helical ferredoxin YPA_3924 IPR012675 Beta-grasp domain YPA_3924 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain YPA_3924 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site YPA_3924 IPR025192 Succinate dehydogenase/fumarate reductase N-terminal YPA_3924 IPR036010 YPA_3924 YPA_3925 IPR003510 Fumarate reductase, subunit C YPA_3925 IPR034804 YPA_3925 YPA_3926 IPR003418 Fumarate reductase, D subunit YPA_3926 IPR034804 YPA_3926 YPA_3927 IPR000390 Small multidrug resistance protein family YPA_3928 IPR001059 Translation elongation factor P/YeiP, central YPA_3928 IPR008991 Translation protein SH3-like domain YPA_3928 IPR011768 Translation elongation factor P YPA_3928 IPR012340 Nucleic acid-binding, OB-fold YPA_3928 IPR013185 Translation elongation factor, KOW-like YPA_3928 IPR013852 Translation elongation factor P/YeiP, conserved site YPA_3928 IPR014722 Ribosomal protein L2 domain 2 YPA_3928 IPR015365 Elongation factor P, C-terminal YPA_3928 IPR020599 Translation elongation factor P/YeiP YPA_3929 IPR003739 Lysine-2,3-aminomutase family YPA_3929 IPR007197 Radical SAM YPA_3929 IPR013785 Aldolase-type TIM barrel YPA_3929 IPR022462 Lysine-2,3-aminomutase-like YPA_3930 IPR025294 Protein of unknown function DUF4156 YPA_3931 IPR001844 Chaperonin Cpn60 YPA_3931 IPR002423 Chaperonin Cpn60/TCP-1 YPA_3931 IPR018370 Chaperonin Cpn60, conserved site YPA_3931 IPR027409 GroEL-like apical domain YPA_3931 IPR027410 TCP-1-like chaperonin intermediate domain YPA_3931 IPR027413 GroEL-like equatorial domain YPA_3932 IPR011032 GroES (chaperonin 10)-like YPA_3932 IPR018369 Chaperonin Cpn10, conserved site YPA_3932 IPR020818 Chaperonin Cpn10 YPA_3932 IPR037124 YPA_3932 YPA_3933 IPR007313 FxsA cytoplasmic membrane protein YPA_3934 IPR000362 Fumarate lyase family YPA_3934 IPR004708 Aspartate ammonia-lyase YPA_3934 IPR008948 L-Aspartase-like YPA_3934 IPR018951 Fumarase C, C-terminal YPA_3934 IPR020557 Fumarate lyase, conserved site YPA_3934 IPR022761 Fumarate lyase, N-terminal YPA_3934 IPR024083 Fumarase/histidase, N-terminal YPA_3935 IPR004668 Anaerobic c4-dicarboxylate membrane transporter YPA_3936 IPR004323 Divalent ion tolerance protein, CutA YPA_3936 IPR011322 Nitrogen regulatory PII-like, alpha/beta YPA_3936 IPR015867 Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal YPA_3936 IPR023700 Divalent cation tolerance protein CutA, bacteria YPA_3937 IPR003834 Cytochrome c assembly protein, transmembrane domain YPA_3937 IPR017937 Thioredoxin, conserved site YPA_3937 IPR022910 Thiol:disulphide interchange protein DsbD YPA_3937 IPR028250 Thiol:disulfide interchange protein DsbD, N-terminal domain YPA_3937 IPR036249 YPA_3937 YPA_3937 IPR036929 YPA_3937 YPA_3938 IPR006478 Formate dehydrogenase, alpha subunit YPA_3938 IPR006655 Molybdopterin oxidoreductase, prokaryotic, conserved site YPA_3938 IPR006656 Molybdopterin oxidoreductase YPA_3938 IPR006657 Molydopterin dinucleotide-binding domain YPA_3938 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain YPA_3938 IPR009010 Aspartate decarboxylase-like domain YPA_3938 IPR027467 Molybdopterin oxidoreductase, molybdopterin cofactor binding site YPA_3939 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain YPA_3939 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site YPA_3940 IPR006006 Glutamate synthase, NADH/NADPH, small subunit 2 YPA_3940 IPR009051 Alpha-helical ferredoxin YPA_3940 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain YPA_3940 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site YPA_3940 IPR023753 Pyridine nucleotide-disulphide oxidoreductase, FAD/NAD(P)-binding domain YPA_3940 IPR028261 Dihydroprymidine dehydrogenase domain II YPA_3940 IPR036188 YPA_3940 YPA_3941 IPR001647 DNA-binding HTH domain, TetR-type YPA_3941 IPR009057 Homeodomain-like YPA_3941 IPR036271 YPA_3941 YPA_3942 IPR004954 Peptidase M60, viral enhancin protein YPA_3942 IPR031161 YPA_3942 YPA_3944 IPR008992 Enterotoxin YPA_3945 IPR005063 Transposase, IS1 YPA_3947 IPR004673 L-rhamnose-proton symport, RhaT YPA_3949 IPR003313 AraC-type arabinose-binding/dimerisation domain YPA_3949 IPR009057 Homeodomain-like YPA_3949 IPR011051 RmlC-like cupin domain YPA_3949 IPR014710 RmlC-like jelly roll fold YPA_3949 IPR018060 DNA binding HTH domain, AraC-type YPA_3949 IPR018062 HTH domain AraC-type, conserved site YPA_3949 IPR020449 Transcription regulator HTH, AraC- type YPA_3949 IPR023699 Transcription activator HTH, RhaR YPA_3950 IPR003313 AraC-type arabinose-binding/dimerisation domain YPA_3950 IPR009057 Homeodomain-like YPA_3950 IPR014710 RmlC-like jelly roll fold YPA_3950 IPR018060 DNA binding HTH domain, AraC-type YPA_3950 IPR020449 Transcription regulator HTH, AraC- type YPA_3950 IPR023609 Transcription regulator HTH, RhaS YPA_3950 IPR037923 YPA_3950 YPA_3952 IPR000577 YPA_3952 YPA_3952 IPR013449 Rhamnulokinase YPA_3952 IPR018484 Carbohydrate kinase, FGGY, N-terminal YPA_3952 IPR018485 Carbohydrate kinase, FGGY, C-terminal YPA_3953 IPR009308 Rhamnose isomerase YPA_3953 IPR036237 YPA_3953 YPA_3954 IPR001303 Class II aldolase/adducin N-terminal YPA_3954 IPR013447 Rhamnulose-1-phosphate aldolase YPA_3954 IPR036409 YPA_3954 YPA_3955 IPR001670 Alcohol dehydrogenase, iron-type YPA_3956 IPR001270 ClpA/B family YPA_3956 IPR002611 IstB-like ATP-binding protein YPA_3956 IPR003593 AAA+ ATPase domain YPA_3956 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPA_3956 IPR028350 DNA replication protein DnaC/insertion sequence putative ATP-binding protein YPA_3957 IPR001584 Integrase, catalytic core YPA_3957 IPR006120 Resolvase, HTH domain YPA_3957 IPR009057 Homeodomain-like YPA_3957 IPR012337 Ribonuclease H-like domain YPA_3958 IPR001670 Alcohol dehydrogenase, iron-type YPA_3958 IPR018211 Alcohol dehydrogenase, iron-type, conserved site YPA_3959 IPR008000 Rhamnose mutarotase YPA_3959 IPR011008 Dimeric alpha-beta barrel YPA_3959 IPR013448 L-rhamnose 1-epimerase YPA_3960 IPR000424 Primosome PriB/single-strand DNA-binding YPA_3960 IPR011344 Single-stranded DNA-binding protein YPA_3960 IPR012340 Nucleic acid-binding, OB-fold YPA_3961 IPR003439 ABC transporter-like YPA_3961 IPR004602 UvrABC system subunit A YPA_3961 IPR017871 ABC transporter, conserved site YPA_3961 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPA_3962 IPR007351 Uncharacterised protein YjbR YPA_3962 IPR038056 YPA_3962 YPA_3963 IPR000796 Aspartate/other aminotransferase YPA_3963 IPR004838 Aminotransferases, class-I, pyridoxal-phosphate-binding site YPA_3963 IPR004839 Aminotransferase, class I/classII YPA_3963 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 YPA_3963 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 YPA_3963 IPR015424 Pyridoxal phosphate-dependent transferase YPA_3964 IPR000821 Alanine racemase YPA_3964 IPR001608 Alanine racemase, N-terminal YPA_3964 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal YPA_3964 IPR011079 Alanine racemase, C-terminal YPA_3964 IPR020622 Alanine racemase, pyridoxal-phosphate attachment site YPA_3964 IPR029066 PLP-binding barrel YPA_3965 IPR003593 AAA+ ATPase domain YPA_3965 IPR007692 DNA helicase, DnaB type YPA_3965 IPR007693 DNA helicase, DnaB-like, N-terminal YPA_3965 IPR007694 DNA helicase, DnaB-like, C-terminal YPA_3965 IPR016136 DNA helicase DnaB, N-terminal/DNA primase DnaG, C-terminal YPA_3965 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPA_3965 IPR036185 YPA_3965 YPA_3966 IPR002364 Quinone oxidoreductase/zeta-crystallin, conserved site YPA_3966 IPR011032 GroES (chaperonin 10)-like YPA_3966 IPR013149 Alcohol dehydrogenase, C-terminal YPA_3966 IPR013154 Alcohol dehydrogenase GroES-like YPA_3966 IPR020843 Polyketide synthase, enoylreductase YPA_3966 IPR036291 YPA_3966 YPA_3967 IPR014318 Phage shock protein, PspG YPA_3968 IPR001269 tRNA-dihydrouridine synthase YPA_3968 IPR004653 tRNA-dihydrouridine synthase, TIM-barrel, YjbN YPA_3968 IPR013785 Aldolase-type TIM barrel YPA_3968 IPR018517 tRNA-dihydrouridine synthase, conserved site YPA_3969 IPR002481 Ferric-uptake regulator YPA_3969 IPR036388 YPA_3969 YPA_3969 IPR036390 YPA_3969 YPA_3970 IPR006197 Peptidase S24, LexA-like YPA_3970 IPR006199 LexA repressor, DNA-binding domain YPA_3970 IPR006200 LexA repressor YPA_3970 IPR015927 Peptidase S24/S26A/S26B/S26C YPA_3970 IPR036286 YPA_3970 YPA_3970 IPR036388 YPA_3970 YPA_3970 IPR036390 YPA_3970 YPA_3971 IPR000829 Diacylglycerol kinase, prokaryotic YPA_3971 IPR036945 YPA_3971 YPA_3972 IPR002123 Phospholipid/glycerol acyltransferase YPA_3972 IPR022284 Glycerol-3-phosphate O-acyltransferase/Dihydroxyacetone phosphate acyltransferase YPA_3972 IPR028354 Glycerol-3-phosphate acyltransferase, PlsB YPA_3973 IPR000537 UbiA prenyltransferase family YPA_3973 IPR006370 4-hydroxybenzoate polyprenyl transferase YPA_3973 IPR030470 YPA_3973 YPA_3974 IPR007440 Chorismate--pyruvate lyase YPA_3974 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain YPA_3975 IPR005546 Autotransporter beta-domain YPA_3975 IPR006315 Outer membrane autotransporter barrel YPA_3975 IPR011050 Pectin lyase fold/virulence factor YPA_3975 IPR012332 P22 tailspike C-terminal domain-like YPA_3975 IPR036709 YPA_3975 YPA_3976 IPR003961 Fibronectin, type III YPA_3976 IPR006094 FAD linked oxidase, N-terminal YPA_3976 IPR012951 Berberine/berberine-like YPA_3976 IPR013783 Immunoglobulin-like fold YPA_3976 IPR036116 YPA_3976 YPA_3976 IPR036318 YPA_3976 YPA_3976 IPR036573 YPA_3976 YPA_3977 IPR013087 Zinc finger C2H2-type/integrase DNA-binding domain YPA_3978 IPR036259 YPA_3978 YPA_3979 IPR008962 PapD-like YPA_3979 IPR013783 Immunoglobulin-like fold YPA_3979 IPR016147 PapD, N-terminal, bacterial YPA_3979 IPR036316 YPA_3979 YPA_3980 IPR000015 Outer membrane usher protein YPA_3980 IPR018030 Fimbrial membrane usher, conserved site YPA_3980 IPR025885 PapC, N-terminal domain YPA_3980 IPR025949 PapC-like, C-terminal domain YPA_3980 IPR037224 YPA_3980 YPA_3981 IPR010546 Protein of unknown function DUF1120 YPA_3982 IPR003325 TerD domain YPA_3983 IPR003325 TerD domain YPA_3984 IPR005496 Integral membrane protein TerC YPA_3984 IPR022369 Integral membrane protein TerC, riboswitch-linked YPA_3985 IPR007791 Heat shock protein DnaJ-like protein DjlA YPA_3985 IPR029024 TerB-like YPA_3986 IPR003325 TerD domain YPA_3986 IPR017115 Tellurite resistance, TerA YPA_3987 IPR003325 TerD domain YPA_3988 IPR011226 ATP-grasp family YPA_3989 IPR011214 Uncharacterised conserved protein UCP020967 YPA_3989 IPR022537 TRSP domain YPA_3989 IPR029057 Phosphoribosyltransferase-like YPA_3990 IPR023214 HAD-like domain YPA_3990 IPR024197 Uncharacterised conserved protein UCP030802 YPA_3990 IPR036412 YPA_3990 YPA_3991 IPR011215 Phosphoribosyl transferase YPA_3991 IPR028157 PELOTA RNA-binding domain YPA_3992 IPR011206 Citrate lyase beta subunit-like YPA_3992 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain YPA_3992 IPR039480 YPA_3992 YPA_3993 IPR011233 Tellurite/Phi/PacB toxicity protection, TerW YPA_3993 IPR036390 YPA_3993 YPA_3994 IPR003171 Methylenetetrahydrofolate reductase YPA_3994 IPR029041 FAD-linked oxidoreductase-like YPA_3995 IPR006638 Elongator protein 3/MiaB/NifB YPA_3995 IPR007197 Radical SAM YPA_3995 IPR023404 Radical SAM, alpha/beta horseshoe YPA_3995 IPR026332 Putative heme utilization radical SAM enzyme HutW YPA_3996 IPR010413 Heme utilization carrier protein HutX like YPA_3997 IPR016040 NAD(P)-binding domain YPA_3997 IPR036291 YPA_3997 YPA_3998 IPR019600 Hemin uptake protein HemP YPA_3999 IPR000531 TonB-dependent receptor, beta-barrel YPA_3999 IPR010916 TonB box, conserved site YPA_3999 IPR010949 TonB-dependent haemoglobin/transferrin/lactoferrin receptor YPA_3999 IPR011276 TonB-dependent haem/haemoglobin receptor YPA_3999 IPR012910 TonB-dependent receptor, plug YPA_3999 IPR036942 YPA_3999 YPA_3999 IPR037066 YPA_3999 YPA_4000 IPR007845 Haemin-degrading HemS/ChuX domain YPA_4001 IPR002491 ABC transporter periplasmic binding domain YPA_4002 IPR000522 ABC transporter, permease protein YPA_4002 IPR037294 YPA_4002 YPA_4003 IPR003439 ABC transporter-like YPA_4003 IPR003593 AAA+ ATPase domain YPA_4003 IPR017871 ABC transporter, conserved site YPA_4003 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPA_4004 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme YPA_4004 IPR006233 Cystathionine beta-lyase, bacterial YPA_4004 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 YPA_4004 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 YPA_4004 IPR015424 Pyridoxal phosphate-dependent transferase YPA_4006 IPR000847 Transcription regulator HTH, LysR YPA_4006 IPR005119 LysR, substrate-binding YPA_4006 IPR036388 YPA_4006 YPA_4006 IPR036390 YPA_4006 YPA_4007 IPR001455 TusA-like domain YPA_4007 IPR036868 YPA_4007 YPA_4008 IPR007272 Sulphur transport domain YPA_4009 IPR006135 Type III secretion system substrate exporter YPA_4009 IPR006307 Type III exporter system, secretion apparatus protein BsaZ YPA_4009 IPR029025 Type III secretion system substrate exporter, C-terminal YPA_4010 IPR002010 Type III secretion system inner membrane R protein YPA_4010 IPR006304 Type III secretion protein SpaR/YscT YPA_4011 IPR002191 Bacterial export protein family 3 YPA_4011 IPR006306 Type III secretion protein HrpO YPA_4012 IPR005773 Yop virulence translocation protein R YPA_4012 IPR005838 Type III secretion system inner membrane P protein YPA_4013 IPR001172 Flagellar motor switch FliN/Type III secretion HrcQb YPA_4013 IPR001543 Surface presentation of antigen (SpoA) YPA_4013 IPR013385 Type III secretion system apparatus protein YscQ/HrcQ/SpaO YPA_4013 IPR036429 YPA_4013 YPA_4016 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain YPA_4016 IPR003593 AAA+ ATPase domain YPA_4016 IPR004100 ATPase, F1 complex alpha/beta subunit, N-terminal domain YPA_4016 IPR005714 ATPase, type III secretion system, FliI/YscN YPA_4016 IPR020003 ATPase, alpha/beta subunit, nucleotide-binding domain, active site YPA_4016 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPA_4017 IPR001712 Type III secretion system FHIPEP YPA_4017 IPR006302 Type III secretion protein HrcV YPA_4017 IPR025505 FHIPEP conserved site YPA_4018 IPR009335 Type III secretion system HrpE /V-type ATP synthase subunit E YPA_4018 IPR012842 Type III secretion system HrpE/YscL YPA_4019 IPR025292 Type III secretion system protein YPA_4020 IPR003282 Type III secretion system lipoprotein HrcJ/YscJ YPA_4020 IPR006182 Secretory protein YscJ/FliF YPA_4021 IPR012670 Type III secretion system, YscI/HrpB YPA_4022 IPR010437 Type III secretion system SsaH YPA_4023 IPR011841 Type III secretion system, needle protein YPA_4023 IPR021123 Type III secretion, needle-protein-like YPA_4023 IPR037203 YPA_4023 YPA_4024 IPR009057 Homeodomain-like YPA_4024 IPR018060 DNA binding HTH domain, AraC-type YPA_4024 IPR020449 Transcription regulator HTH, AraC- type YPA_4025 IPR012671 Type III secretion system, secretion protein E YPA_4026 IPR012843 Type III secretion system YscD/HrpQ YPA_4026 IPR032034 YPA_4026 YPA_4027 IPR003522 Type III secretion system outer membrane pore YscC/HrcC YPA_4027 IPR004845 Type II secretion system GspD, conserved site YPA_4027 IPR004846 Type II/III secretion system YPA_4027 IPR005644 NolW-like YPA_4027 IPR038591 YPA_4027 YPA_4028 IPR001789 Signal transduction response regulator, receiver domain YPA_4028 IPR003594 Histidine kinase-like ATPase, C-terminal domain YPA_4028 IPR003661 Signal transduction histidine kinase EnvZ-like, dimerisation/phosphoacceptor domain YPA_4028 IPR004358 Signal transduction histidine kinase-related protein, C-terminal YPA_4028 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain YPA_4028 IPR011006 CheY-like superfamily YPA_4028 IPR036097 YPA_4028 YPA_4028 IPR036641 YPA_4028 YPA_4028 IPR036890 YPA_4028 YPA_4029 IPR000792 Transcription regulator LuxR, C-terminal YPA_4029 IPR001789 Signal transduction response regulator, receiver domain YPA_4029 IPR011006 CheY-like superfamily YPA_4029 IPR016032 Signal transduction response regulator, C-terminal effector YPA_4030 IPR001991 Sodium:dicarboxylate symporter YPA_4030 IPR018107 Sodium:dicarboxylate symporter, conserved site YPA_4030 IPR034703 YPA_4030 YPA_4030 IPR036458 YPA_4030 YPA_4031 IPR000873 AMP-dependent synthetase/ligase YPA_4031 IPR011904 Acetate-CoA ligase YPA_4031 IPR020845 AMP-binding, conserved site YPA_4031 IPR025110 AMP-binding enzyme C-terminal domain YPA_4031 IPR032387 YPA_4031 YPA_4032 IPR007436 Protein of unknown function DUF485 YPA_4033 IPR001734 Sodium/solute symporter YPA_4033 IPR014083 Cation/acetate symporter ActP YPA_4033 IPR018212 Sodium/solute symporter, conserved site YPA_4033 IPR038377 YPA_4033 YPA_4034 IPR025890 Abhydrolase, bacterial YPA_4034 IPR029058 Alpha/Beta hydrolase fold YPA_4035 IPR001584 Integrase, catalytic core YPA_4035 IPR006120 Resolvase, HTH domain YPA_4035 IPR009057 Homeodomain-like YPA_4035 IPR012337 Ribonuclease H-like domain YPA_4036 IPR001270 ClpA/B family YPA_4036 IPR002611 IstB-like ATP-binding protein YPA_4036 IPR003593 AAA+ ATPase domain YPA_4036 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPA_4036 IPR028350 DNA replication protein DnaC/insertion sequence putative ATP-binding protein YPA_4037 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPA_4037 IPR032781 YPA_4037 YPA_4038 IPR003439 ABC transporter-like YPA_4038 IPR017871 ABC transporter, conserved site YPA_4038 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPA_4039 IPR006664 Outer membrane protein, bacterial YPA_4039 IPR006665 Outer membrane protein, OmpA/MotB, C-terminal YPA_4039 IPR036737 YPA_4039 YPA_4040 IPR000160 GGDEF domain YPA_4040 IPR029787 Nucleotide cyclase YPA_4040 IPR033417 YPA_4040 YPA_4041 IPR025293 Protein of unknown function DUF4154 YPA_4042 IPR001757 Cation-transporting P-type ATPase YPA_4042 IPR004014 Cation-transporting P-type ATPase, N-terminal YPA_4042 IPR006068 Cation-transporting P-type ATPase, C-terminal YPA_4042 IPR008250 P-type ATPase, A domain YPA_4042 IPR018303 P-type ATPase, phosphorylation site YPA_4042 IPR023214 HAD-like domain YPA_4042 IPR023298 P-type ATPase, transmembrane domain YPA_4042 IPR023299 P-type ATPase, cytoplasmic domain N YPA_4042 IPR036412 YPA_4042 YPA_4043 IPR000189 Prokaryotic transglycosylase, active site YPA_4043 IPR008258 Lytic transglycosylase-like SLT domain YPA_4043 IPR008939 Lytic transglycosylase, superhelical U-shaped YPA_4043 IPR012289 Lytic transglycosylase, superhelical linker YPA_4043 IPR023346 Lysozyme-like domain YPA_4043 IPR037061 YPA_4043 YPA_4044 IPR000831 Trp repressor YPA_4044 IPR010921 Trp repressor/replication initiator YPA_4044 IPR013335 Trp repressor, bacterial YPA_4044 IPR038116 YPA_4044 YPA_4045 IPR002786 Non-canonical purine NTP phosphatase YPA_4045 IPR026533 Non-canonical purine NTP phosphatase/PRRC1 YPA_4045 IPR029001 Inosine triphosphate pyrophosphatase-like YPA_4046 IPR001345 Phosphoglycerate/bisphosphoglycerate mutase, active site YPA_4046 IPR013078 Histidine phosphatase superfamily, clade-1 YPA_4046 IPR023086 Phosphoglycerate mutase, GpmB, probable YPA_4046 IPR029033 Histidine phosphatase superfamily YPA_4047 IPR009057 Homeodomain-like YPA_4047 IPR010499 Bacterial transcription activator, effector binding YPA_4047 IPR011256 Regulatory factor, effector binding domain YPA_4047 IPR018060 DNA binding HTH domain, AraC-type YPA_4047 IPR018062 HTH domain AraC-type, conserved site YPA_4047 IPR020449 Transcription regulator HTH, AraC- type YPA_4047 IPR029442 GyrI-like small molecule binding domain YPA_4048 IPR010292 Uncharacterised protein family CreA YPA_4049 IPR001789 Signal transduction response regulator, receiver domain YPA_4049 IPR001867 Signal transduction response regulator, C-terminal YPA_4049 IPR011006 CheY-like superfamily YPA_4049 IPR016032 Signal transduction response regulator, C-terminal effector YPA_4049 IPR036388 YPA_4049 YPA_4051 IPR001048 Aspartate/glutamate/uridylate kinase YPA_4051 IPR001341 Aspartate kinase domain YPA_4051 IPR001342 Homoserine dehydrogenase, catalytic YPA_4051 IPR002912 ACT domain YPA_4051 IPR005106 Aspartate/homoserine dehydrogenase, NAD-binding YPA_4051 IPR011147 Bifunctional aspartokinase/homoserine dehydrogenase I YPA_4051 IPR018042 Aspartate kinase, conserved site YPA_4051 IPR019811 Homoserine dehydrogenase, conserved site YPA_4051 IPR027795 GATS-like ACT domain YPA_4051 IPR036291 YPA_4051 YPA_4051 IPR036393 YPA_4051 YPA_4052 IPR000870 Homoserine kinase YPA_4052 IPR006203 GHMP kinase, ATP-binding, conserved site YPA_4052 IPR006204 GHMP kinase N-terminal domain YPA_4052 IPR013750 GHMP kinase, C-terminal domain YPA_4052 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup YPA_4052 IPR020568 Ribosomal protein S5 domain 2-type fold YPA_4052 IPR036554 YPA_4052 YPA_4053 IPR000634 Serine/threonine dehydratase, pyridoxal-phosphate-binding site YPA_4053 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme YPA_4053 IPR004450 Threonine synthase-like YPA_4053 IPR029144 Threonine synthase, N-terminal YPA_4053 IPR036052 YPA_4053 YPA_4053 IPR037158 YPA_4053 YPA_4054 IPR005583 Uncharacterised protein family UPF0246 YPA_4056 IPR001585 Transaldolase YPA_4056 IPR004730 Transaldolase type 1 YPA_4056 IPR013785 Aldolase-type TIM barrel YPA_4056 IPR018225 Transaldolase, active site YPA_4058 IPR001453 Molybdopterin binding domain YPA_4058 IPR008284 Molybdenum cofactor biosynthesis, conserved site YPA_4058 IPR036425 YPA_4058 YPA_4059 IPR011701 Major facilitator superfamily YPA_4059 IPR036259 YPA_4059 YPA_4060 IPR011024 Gamma-crystallin-related YPA_4060 IPR016181 Acyl-CoA N-acyltransferase YPA_4061 IPR000791 GPR1/FUN34/yaaH YPA_4062 IPR012725 Chaperone DnaK YPA_4062 IPR013126 Heat shock protein 70 family YPA_4062 IPR018181 Heat shock protein 70, conserved site YPA_4062 IPR029047 Heat shock protein 70kD, peptide-binding domain YPA_4062 IPR029048 Heat shock protein 70kD, C-terminal domain YPA_4063 IPR001305 Heat shock protein DnaJ, cysteine-rich domain YPA_4063 IPR001623 DnaJ domain YPA_4063 IPR002939 Chaperone DnaJ, C-terminal YPA_4063 IPR008971 HSP40/DnaJ peptide-binding YPA_4063 IPR012724 Chaperone DnaJ YPA_4063 IPR018253 DnaJ domain, conserved site YPA_4063 IPR036410 YPA_4063 YPA_4063 IPR036869 YPA_4063 YPA_4064 IPR004670 Na+/H+ antiporter NhaA YPA_4064 IPR023171 Na/H antiporter domain YPA_4065 IPR000847 Transcription regulator HTH, LysR YPA_4065 IPR005119 LysR, substrate-binding YPA_4065 IPR036388 YPA_4065 YPA_4065 IPR036390 YPA_4065 YPA_4066 IPR002583 Ribosomal protein S20 YPA_4066 IPR036510 YPA_4066 YPA_4067 IPR002606 Riboflavin kinase, bacterial YPA_4067 IPR004821 Cytidyltransferase-like domain YPA_4067 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold YPA_4067 IPR015864 FAD synthetase YPA_4067 IPR015865 Riboflavin kinase domain, bacterial/eukaryotic YPA_4067 IPR023465 Riboflavin kinase domain YPA_4068 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site YPA_4068 IPR002300 Aminoacyl-tRNA synthetase, class Ia YPA_4068 IPR002301 Isoleucine-tRNA ligase YPA_4068 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain YPA_4068 IPR009080 Aminoacyl-tRNA synthetase, class 1a, anticodon-binding YPA_4068 IPR010663 Zinc finger, DNA glycosylase/AP lyase/isoleucyl tRNA synthetase YPA_4068 IPR013155 Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding YPA_4068 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold YPA_4068 IPR023585 Isoleucine-tRNA ligase, type 1 YPA_4069 IPR001872 Peptidase A8, signal peptidase II YPA_4070 IPR001179 Peptidyl-prolyl cis-trans isomerase, FKBP-type, domain YPA_4071 IPR003451 4-hydroxy-3-methylbut-2-enyl diphosphate reductase YPA_4072 IPR002686 Transposase IS200-like YPA_4072 IPR036515 YPA_4072 YPA_4073 IPR000846 Dihydrodipicolinate reductase, N-terminal YPA_4073 IPR022663 Dihydrodipicolinate reductase, C-terminal YPA_4073 IPR022664 Dihydrodipicolinate reductase, conserved site YPA_4073 IPR023940 Dihydrodipicolinate reductase, bacterial YPA_4073 IPR036291 YPA_4073 YPA_4074 IPR002474 Carbamoyl-phosphate synthase, small subunit N-terminal domain YPA_4074 IPR006274 Carbamoyl-phosphate synthase, small subunit YPA_4074 IPR017926 Glutamine amidotransferase YPA_4074 IPR029062 Class I glutamine amidotransferase-like YPA_4074 IPR036480 YPA_4074 YPA_4075 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain YPA_4075 IPR005480 Carbamoyl-phosphate synthetase, large subunit oligomerisation domain YPA_4075 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain YPA_4075 IPR006275 Carbamoyl-phosphate synthase, large subunit YPA_4075 IPR011607 Methylglyoxal synthase-like domain YPA_4075 IPR016185 Pre-ATP-grasp domain YPA_4075 IPR036897 YPA_4075 YPA_4075 IPR036914 YPA_4075 YPA_4076 IPR001123 Lysine-type exporter protein (LYSE/YGGA) YPA_4077 IPR010619 Domain of unknown function DUF1212 YPA_4078 IPR024528 Domain of unknown function DUF3815 YPA_4079 IPR001796 Dihydrofolate reductase domain YPA_4079 IPR012259 Dihydrofolate reductase YPA_4079 IPR017925 Dihydrofolate reductase conserved site YPA_4079 IPR024072 Dihydrofolate reductase-like domain YPA_4080 IPR002686 Transposase IS200-like YPA_4080 IPR036515 YPA_4080 YPA_4082 IPR022231 Protein of unknown function DUF3757 YPA_4083 IPR022231 Protein of unknown function DUF3757 YPA_4084 IPR004617 Bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YPA_4084 IPR004843 Calcineurin-like phosphoesterase domain, apaH type YPA_4084 IPR029052 Metallo-dependent phosphatase-like YPA_4085 IPR007474 ApaG domain YPA_4085 IPR023065 Uncharacterised protein family ApaG YPA_4085 IPR036767 YPA_4085 YPA_4086 IPR001737 Ribosomal RNA adenine methylase transferase YPA_4086 IPR011530 Ribosomal RNA adenine dimethylase YPA_4086 IPR020596 Ribosomal RNA adenine methylase transferase, conserved site YPA_4086 IPR020598 Ribosomal RNA adenine methylase transferase, N-terminal YPA_4086 IPR023165 rRNA adenine dimethylase-like YPA_4086 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase-like YPA_4087 IPR005255 4-hydroxythreonine-4-phosphate dehydrogenase PdxA YPA_4087 IPR037510 YPA_4087 YPA_4088 IPR000297 Peptidyl-prolyl cis-trans isomerase, PpiC-type YPA_4088 IPR015391 SurA N-terminal YPA_4088 IPR023034 Peptidyl-prolyl isomerase SurA YPA_4088 IPR027304 Trigger factor/SurA domain YPA_4089 IPR005653 Organic solvent tolerance-like, N-terminal YPA_4089 IPR007543 Organic solvent tolerance protein, C-terminal YPA_4089 IPR020889 Lipopolysaccharide assembly, LptD YPA_4090 IPR001623 DnaJ domain YPA_4090 IPR007791 Heat shock protein DnaJ-like protein DjlA YPA_4090 IPR023749 DnaJ-like protein DjlA YPA_4090 IPR029024 TerB-like YPA_4090 IPR036869 YPA_4090 YPA_4091 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F YPA_4091 IPR006224 Pseudouridine synthase, RluC/RluD, conserved site YPA_4091 IPR020103 Pseudouridine synthase, catalytic domain YPA_4093 IPR018754 Protein of unknown function DUF2285 YPA_4094 IPR010657 ImpA, N-terminal YPA_4095 IPR008312 Uncharacterised conserved protein UCP028301 YPA_4096 IPR010269 Protein of unknown function DUF877 YPA_4097 IPR001270 ClpA/B family YPA_4097 IPR002611 IstB-like ATP-binding protein YPA_4097 IPR003593 AAA+ ATPase domain YPA_4097 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPA_4097 IPR028350 DNA replication protein DnaC/insertion sequence putative ATP-binding protein YPA_4098 IPR001584 Integrase, catalytic core YPA_4098 IPR006120 Resolvase, HTH domain YPA_4098 IPR009057 Homeodomain-like YPA_4098 IPR012337 Ribonuclease H-like domain YPA_4099 IPR007895 MASE1 YPA_4100 IPR000792 Transcription regulator LuxR, C-terminal YPA_4100 IPR001789 Signal transduction response regulator, receiver domain YPA_4100 IPR011006 CheY-like superfamily YPA_4100 IPR016032 Signal transduction response regulator, C-terminal effector YPA_4101 IPR000917 Sulfatase YPA_4101 IPR012549 Domain of unknown function DUF1705 YPA_4101 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha YPA_4101 IPR017850 Alkaline-phosphatase-like, core domain YPA_4102 IPR022742 Putative lysophospholipase YPA_4102 IPR029058 Alpha/Beta hydrolase fold YPA_4103 IPR002293 Amino acid/polyamine transporter I YPA_4103 IPR004840 Amino acid permease, conserved site YPA_4103 IPR004841 Amino acid permease/ SLC12A domain YPA_4104 IPR001106 Aromatic amino acid lyase YPA_4104 IPR005921 Histidine ammonia-lyase YPA_4104 IPR008948 L-Aspartase-like YPA_4104 IPR022313 Phenylalanine/histidine ammonia-lyases, active site YPA_4104 IPR024083 Fumarase/histidase, N-terminal YPA_4105 IPR023636 Urocanase conserved site YPA_4105 IPR023637 Urocanase YPA_4105 IPR035085 YPA_4105 YPA_4105 IPR035400 YPA_4105 YPA_4105 IPR035401 YPA_4105 YPA_4105 IPR036190 YPA_4105 YPA_4105 IPR038364 YPA_4105 YPA_4106 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme YPA_4106 IPR036052 YPA_4106 YPA_4107 IPR000836 Phosphoribosyltransferase domain YPA_4107 IPR029057 Phosphoribosyltransferase-like YPA_4108 IPR000620 Drug/metabolite transporter YPA_4110 IPR001584 Integrase, catalytic core YPA_4110 IPR006120 Resolvase, HTH domain YPA_4110 IPR009057 Homeodomain-like YPA_4110 IPR012337 Ribonuclease H-like domain YPA_4111 IPR001270 ClpA/B family YPA_4111 IPR002611 IstB-like ATP-binding protein YPA_4111 IPR003593 AAA+ ATPase domain YPA_4111 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPA_4111 IPR028350 DNA replication protein DnaC/insertion sequence putative ATP-binding protein YPA_4113 IPR002491 ABC transporter periplasmic binding domain YPA_4114 IPR000522 ABC transporter, permease protein YPA_4114 IPR037294 YPA_4114 YPA_4115 IPR000522 ABC transporter, permease protein YPA_4115 IPR037294 YPA_4115 YPA_4116 IPR003439 ABC transporter-like YPA_4116 IPR003593 AAA+ ATPase domain YPA_4116 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPA_4117 IPR011204 Virulence protein RhuM-like YPA_4119 IPR001387 Cro/C1-type helix-turn-helix domain YPA_4119 IPR010982 Lambda repressor-like, DNA-binding domain YPA_4120 IPR025668 Transposase DDE domain YPA_4123 IPR002104 Integrase, catalytic YPA_4123 IPR010998 Integrase, Lambda-type, N-terminal YPA_4123 IPR011010 DNA breaking-rejoining enzyme, catalytic core YPA_4123 IPR013762 Integrase-like, catalytic core YPA_4123 IPR025166 Domain of unknown function DUF4102 YPA_4123 IPR038488 YPA_4123 YPA_4124 IPR009057 Homeodomain-like YPA_4124 IPR018060 DNA binding HTH domain, AraC-type YPA_4124 IPR018062 HTH domain AraC-type, conserved site YPA_4124 IPR020449 Transcription regulator HTH, AraC- type YPA_4124 IPR028082 Periplasmic binding protein-like I YPA_4125 IPR001851 ABC transporter, permease YPA_4126 IPR003439 ABC transporter-like YPA_4126 IPR003593 AAA+ ATPase domain YPA_4126 IPR013455 ABC transporter, D-xylose, ATP-binding protein YPA_4126 IPR017871 ABC transporter, conserved site YPA_4126 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPA_4127 IPR013456 D-xylose ABC transporter, substrate-binding protein YPA_4127 IPR025997 Periplasmic binding protein domain YPA_4127 IPR028082 Periplasmic binding protein-like I YPA_4128 IPR001998 Xylose isomerase YPA_4128 IPR013452 Xylose isomerase, bacterial-type YPA_4128 IPR036237 YPA_4128 YPA_4129 IPR000577 YPA_4129 YPA_4129 IPR006000 Xylulokinase YPA_4129 IPR018483 Carbohydrate kinase, FGGY, conserved site YPA_4129 IPR018484 Carbohydrate kinase, FGGY, N-terminal YPA_4129 IPR018485 Carbohydrate kinase, FGGY, C-terminal YPA_4130 IPR000259 Fimbrial-type adhesion domain YPA_4130 IPR008966 Adhesion domain YPA_4130 IPR036937 YPA_4130 YPA_4131 IPR001829 Pili assembly chaperone, bacterial YPA_4131 IPR008962 PapD-like YPA_4131 IPR013783 Immunoglobulin-like fold YPA_4131 IPR016147 PapD, N-terminal, bacterial YPA_4131 IPR016148 Pili assembly chaperone, C-terminal domain YPA_4131 IPR018046 Pili assembly chaperone, conserved site YPA_4131 IPR036316 YPA_4131 YPA_4132 IPR025949 PapC-like, C-terminal domain YPA_4133 IPR000015 Outer membrane usher protein YPA_4134 IPR000015 Outer membrane usher protein YPA_4134 IPR018030 Fimbrial membrane usher, conserved site YPA_4134 IPR025885 PapC, N-terminal domain YPA_4134 IPR037224 YPA_4134 YPA_4135 IPR000259 Fimbrial-type adhesion domain YPA_4135 IPR008966 Adhesion domain YPA_4135 IPR036937 YPA_4135 YPA_4136 IPR002656 Acyltransferase 3 YPA_4136 IPR032905 YPA_4136 YPA_4137 IPR009057 Homeodomain-like YPA_4137 IPR010921 Trp repressor/replication initiator YPA_4138 IPR001584 Integrase, catalytic core YPA_4138 IPR012337 Ribonuclease H-like domain YPA_4138 IPR025948 HTH-like domain YPA_4138 IPR036397 YPA_4138 YPA_4139 IPR000150 Cof protein YPA_4139 IPR006379 HAD-superfamily hydrolase, subfamily IIB YPA_4139 IPR023214 HAD-like domain YPA_4139 IPR036412 YPA_4139 YPA_4140 IPR000565 DNA topoisomerase, type IIA, subunit B YPA_4140 IPR001241 DNA topoisomerase, type IIA YPA_4140 IPR002288 DNA gyrase B subunit, C-terminal YPA_4140 IPR003594 Histidine kinase-like ATPase, C-terminal domain YPA_4140 IPR006171 Toprim domain YPA_4140 IPR011557 DNA gyrase, subunit B YPA_4140 IPR013506 DNA topoisomerase, type IIA, subunit B, domain 2 YPA_4140 IPR013759 DNA topoisomerase, type IIA, central domain YPA_4140 IPR013760 DNA topoisomerase, type IIA-like domain YPA_4140 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup YPA_4140 IPR018522 DNA topoisomerase, type IIA, conserved site YPA_4140 IPR020568 Ribosomal protein S5 domain 2-type fold YPA_4140 IPR036890 YPA_4140 YPA_4141 IPR001238 DNA-binding, RecF YPA_4141 IPR003395 RecF/RecN/SMC, N-terminal YPA_4141 IPR018078 DNA-binding, RecF, conserved site YPA_4141 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPA_4142 IPR001001 DNA polymerase III, beta chain YPA_4142 IPR022634 DNA polymerase III, beta chain, N-terminal YPA_4142 IPR022635 DNA polymerase III, beta chain, C-terminal YPA_4142 IPR022637 DNA polymerase III, beta chain, central YPA_4143 IPR001957 Chromosomal replication control, initiator DnaA YPA_4143 IPR003593 AAA+ ATPase domain YPA_4143 IPR010921 Trp repressor/replication initiator YPA_4143 IPR013159 Chromosomal replication initiator, DnaA C-terminal YPA_4143 IPR013317 Chromosomal replication control, initiator (DnaA)/regulator (Hda) YPA_4143 IPR018312 Chromosomal replication control, initiator DnaA, conserved site YPA_4143 IPR020591 Chromosomal replication control, initiator DnaA-like YPA_4143 IPR024633 DnaA N-terminal domain YPA_4143 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPA_4143 IPR038454 YPA_4143 YPA_4144 IPR000271 Ribosomal protein L34 YPA_4144 IPR020939 Ribosomal protein L34, conserved site YPA_4145 IPR000100 Ribonuclease P YPA_4145 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup YPA_4145 IPR020539 Ribonuclease P, conserved site YPA_4145 IPR020568 Ribosomal protein S5 domain 2-type fold YPA_4146 IPR002696 Putative membrane protein insertion efficiency factor YPA_4147 IPR001708 Membrane insertase OXA1/ALB3/YidC YPA_4147 IPR019998 Membrane insertase YidC YPA_4147 IPR028053 Membrane insertase YidC, N-terminal YPA_4147 IPR028055 Membrane insertase YidC/Oxa1, C-terminal YPA_4147 IPR038210 YPA_4147 YPA_4147 IPR038221 YPA_4147 YPA_4148 IPR004520 tRNA modification GTPase MnmE YPA_4148 IPR005225 Small GTP-binding protein domain YPA_4148 IPR006073 GTP binding domain YPA_4148 IPR018948 GTP-binding protein TrmE, N-terminal YPA_4148 IPR025867 tRNA modification GTPase MnmE C-terminal domain YPA_4148 IPR027266 GTP-binding protein TrmE/Glycine cleavage system T protein, domain 1 YPA_4148 IPR027368 tRNA modification GTPase MnmE domain 2 YPA_4148 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPA_4149 IPR010758 Trans-2-enoyl-CoA reductase YPA_4149 IPR024906 Enoyl reductase FAD binding domain YPA_4149 IPR024910 Trans-2-enoyl-CoA reductase catalytic domain, putative YPA_4152 IPR006043 Xanthine/uracil/vitamin C permease YPA_4152 IPR026033 Purine permease PbuG-like YPA_4153 IPR006439 HAD hydrolase, subfamily IA YPA_4153 IPR023198 Phosphoglycolate phosphatase, domain 2 YPA_4153 IPR023214 HAD-like domain YPA_4153 IPR036412 YPA_4153 YPA_4154 IPR000515 MetI-like domain YPA_4154 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain, His/Glu/Gln/Arg/opine family YPA_4154 IPR035906 YPA_4154 YPA_4155 IPR000515 MetI-like domain YPA_4155 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain, His/Glu/Gln/Arg/opine family YPA_4155 IPR035906 YPA_4155 YPA_4156 IPR001638 Extracellular solute-binding protein, family 3 YPA_4156 IPR018313 Extracellular solute-binding protein, family 3, conserved site YPA_4157 IPR007607 Protein of unknown function DUF583 YPA_4158 IPR026022 PhoU domain YPA_4158 IPR028366 Phosphate transport system protein PhoU YPA_4158 IPR038078 YPA_4158 YPA_4159 IPR003439 ABC transporter-like YPA_4159 IPR003593 AAA+ ATPase domain YPA_4159 IPR005670 Phosphate transport system permease protein 1 YPA_4159 IPR017871 ABC transporter, conserved site YPA_4159 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPA_4160 IPR000515 MetI-like domain YPA_4160 IPR005672 Phosphate transport system permease protein PstA YPA_4160 IPR035906 YPA_4160 YPA_4161 IPR000515 MetI-like domain YPA_4161 IPR011864 Phosphate ABC transporter, permease protein PstC YPA_4161 IPR035906 YPA_4161 YPA_4162 IPR005673 ABC transporter, phosphate-binding protein PstS YPA_4162 IPR024370 PBP domain YPA_4163 IPR001347 Sugar isomerase (SIS) YPA_4163 IPR005855 Glucosamine-fructose-6-phosphate aminotransferase, isomerising YPA_4163 IPR029055 Nucleophile aminohydrolases, N-terminal YPA_4164 IPR001451 Bacterial transferase hexapeptide repeat YPA_4164 IPR005882 Bifunctional UDP-N-acetylglucosamine pyrophosphorylase/glucosamine-1-phosphate N-acetyltransferase YPA_4164 IPR011004 Trimeric LpxA-like YPA_4164 IPR018357 Hexapeptide transferase, conserved site YPA_4164 IPR025877 MobA-like NTP transferase domain YPA_4164 IPR029044 Nucleotide-diphospho-sugar transferases YPA_4165 IPR001469 ATPase, F1 complex, delta/epsilon subunit YPA_4165 IPR020546 ATPase, F1 complex, delta/epsilon subunit, N-terminal YPA_4165 IPR020547 ATPase, F1 complex, delta/epsilon subunit, C-terminal domain YPA_4165 IPR036771 YPA_4165 YPA_4165 IPR036794 YPA_4165 YPA_4166 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain YPA_4166 IPR003593 AAA+ ATPase domain YPA_4166 IPR004100 ATPase, F1 complex alpha/beta subunit, N-terminal domain YPA_4166 IPR005722 ATPase, F1 complex, beta subunit YPA_4166 IPR020003 ATPase, alpha/beta subunit, nucleotide-binding domain, active site YPA_4166 IPR024034 ATPase, F1 complex beta subunit/V1 complex, C-terminal YPA_4166 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPA_4166 IPR036121 YPA_4166 YPA_4167 IPR000131 ATPase, F1 complex, gamma subunit YPA_4167 IPR023632 ATPase, F1 complex, gamma subunit conserved site YPA_4167 IPR035968 YPA_4167 YPA_4168 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain YPA_4168 IPR000793 ATPase, F1/V1/A1 complex, alpha/beta subunit, C-terminal YPA_4168 IPR004100 ATPase, F1 complex alpha/beta subunit, N-terminal domain YPA_4168 IPR005294 ATPase, F1 complex, alpha subunit YPA_4168 IPR020003 ATPase, alpha/beta subunit, nucleotide-binding domain, active site YPA_4168 IPR023366 ATP synthase subunit alpha-like domain YPA_4168 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPA_4168 IPR036121 YPA_4168 YPA_4168 IPR038376 YPA_4168 YPA_4169 IPR000711 ATPase, OSCP/delta subunit YPA_4169 IPR020781 ATPase, OSCP/delta subunit, conserved site YPA_4169 IPR026015 F1F0 ATP synthase OSCP/delta subunit, N-terminal domain YPA_4170 IPR002146 ATPase, F0 complex, subunit B/B', bacterial/chloroplast YPA_4170 IPR005864 ATPase, F0 complex, subunit B, bacterial YPA_4170 IPR028987 F-type ATP synthase subunit B-like, membrane domain YPA_4171 IPR000454 ATPase, F0 complex, subunit C YPA_4171 IPR002379 V-ATPase proteolipid subunit C-like domain YPA_4171 IPR005953 ATPase, F0 complex, subunit C, bacterial/chloroplast YPA_4171 IPR020537 ATPase, F0 complex, subunit C, DCCD-binding site YPA_4171 IPR035921 YPA_4171 YPA_4171 IPR038662 YPA_4171 YPA_4172 IPR000568 ATPase, F0 complex, subunit A YPA_4172 IPR023011 ATPase, F0 complex, subunit A, active site YPA_4172 IPR035908 YPA_4172 YPA_4173 IPR005598 ATP synthase protein I YPA_4174 IPR003682 rRNA small subunit methyltransferase G YPA_4174 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase-like YPA_4175 IPR002218 Glucose-inhibited division protein A-related YPA_4175 IPR004416 Glucose-inhibited division protein A YPA_4175 IPR020595 Glucose-inhibited division protein A-related, conserved site YPA_4175 IPR026904 GidA associated domain 3 YPA_4175 IPR036188 YPA_4175 YPA_CD0001 IPR001584 Integrase, catalytic core YPA_CD0001 IPR006120 Resolvase, HTH domain YPA_CD0001 IPR009057 Homeodomain-like YPA_CD0001 IPR012337 Ribonuclease H-like domain YPA_CD0002 IPR001270 ClpA/B family YPA_CD0002 IPR002611 IstB-like ATP-binding protein YPA_CD0002 IPR003593 AAA+ ATPase domain YPA_CD0002 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPA_CD0002 IPR028350 DNA replication protein DnaC/insertion sequence putative ATP-binding protein YPA_CD0003 IPR015103 Protein-tyrosine phosphatase, YopH, N-terminal YPA_CD0003 IPR036484 YPA_CD0003 YPA_CD0004 IPR012842 Type III secretion system HrpE/YscL YPA_CD0004 IPR018035 Flagellar assembly protein FliH/Type III secretion system HrpE YPA_CD0005 IPR009510 Type III secretion system, secretion protein K YPA_CD0006 IPR003282 Type III secretion system lipoprotein HrcJ/YscJ YPA_CD0006 IPR006182 Secretory protein YscJ/FliF YPA_CD0007 IPR012670 Type III secretion system, YscI/HrpB YPA_CD0008 IPR013349 Type III secretion system effector YopR YPA_CD0009 IPR011990 Tetratricopeptide-like helical domain YPA_CD0009 IPR013348 Type III secretion system YscG YPA_CD0010 IPR011841 Type III secretion system, needle protein YPA_CD0010 IPR021123 Type III secretion, needle-protein-like YPA_CD0010 IPR037203 YPA_CD0010 YPA_CD0011 IPR008984 SMAD/FHA domain YPA_CD0011 IPR012843 Type III secretion system YscD/HrpQ YPA_CD0011 IPR032030 YPA_CD0011 YPA_CD0011 IPR032034 YPA_CD0011 YPA_CD0012 IPR003522 Type III secretion system outer membrane pore YscC/HrcC YPA_CD0012 IPR004845 Type II secretion system GspD, conserved site YPA_CD0012 IPR004846 Type II/III secretion system YPA_CD0012 IPR005644 NolW-like YPA_CD0012 IPR038591 YPA_CD0012 YPA_CD0013 IPR010261 Tir chaperone protein (CesT) family YPA_CD0013 IPR013353 Type III secretion system chaperone YscB YPA_CD0014 IPR003313 AraC-type arabinose-binding/dimerisation domain YPA_CD0014 IPR009057 Homeodomain-like YPA_CD0014 IPR018060 DNA binding HTH domain, AraC-type YPA_CD0014 IPR018062 HTH domain AraC-type, conserved site YPA_CD0014 IPR020449 Transcription regulator HTH, AraC- type YPA_CD0014 IPR037923 YPA_CD0014 YPA_CD0015 IPR006135 Type III secretion system substrate exporter YPA_CD0015 IPR006307 Type III exporter system, secretion apparatus protein BsaZ YPA_CD0015 IPR029025 Type III secretion system substrate exporter, C-terminal YPA_CD0016 IPR002010 Type III secretion system inner membrane R protein YPA_CD0016 IPR006304 Type III secretion protein SpaR/YscT YPA_CD0017 IPR002191 Bacterial export protein family 3 YPA_CD0017 IPR006306 Type III secretion protein HrpO YPA_CD0018 IPR005773 Yop virulence translocation protein R YPA_CD0018 IPR005838 Type III secretion system inner membrane P protein YPA_CD0019 IPR001543 Surface presentation of antigen (SpoA) YPA_CD0019 IPR003283 Type III secretion system outer membrane, SpaO YPA_CD0019 IPR013385 Type III secretion system apparatus protein YscQ/HrcQ/SpaO YPA_CD0019 IPR036429 YPA_CD0019 YPA_CD0020 IPR013354 Type III secretion system needle length determinant, C-terminal domain YPA_CD0020 IPR021136 Flagellar hook-length control protein-like, C-terminal YPA_CD0021 IPR009929 Type III secretion sytem,YscO YPA_CD0022 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain YPA_CD0022 IPR003593 AAA+ ATPase domain YPA_CD0022 IPR004100 ATPase, F1 complex alpha/beta subunit, N-terminal domain YPA_CD0022 IPR005714 ATPase, type III secretion system, FliI/YscN YPA_CD0022 IPR013380 ATPase, type III secretion system, H+-transporting YPA_CD0022 IPR020003 ATPase, alpha/beta subunit, nucleotide-binding domain, active site YPA_CD0022 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPA_CD0023 IPR010812 Hypersensitivity response secretion-like, HrpJ YPA_CD0023 IPR013401 Type III secretion regulator, YopN/LcrE/InvE/MxiC YPA_CD0024 IPR013351 Type III secretion system effector delivery regulator TyeA-related YPA_CD0024 IPR015144 Type III secretion system effector delivery regulator TyeA YPA_CD0024 IPR038347 YPA_CD0024 YPA_CD0025 IPR012673 Type III secretion system chaperone SycN YPA_CD0026 IPR012672 Type III secretion system YscX YPA_CD0027 IPR011990 Tetratricopeptide-like helical domain YPA_CD0027 IPR016684 Type III secretion system chaperone, YscY YPA_CD0028 IPR001712 Type III secretion system FHIPEP YPA_CD0028 IPR006302 Type III secretion protein HrcV YPA_CD0028 IPR025505 FHIPEP conserved site YPA_CD0029 IPR013405 Type III secretion system regulator, LcrR YPA_CD0029 IPR022797 Type III secretion system regulator LcrR/Chaperone CesD2 YPA_CD0030 IPR005413 Low calcium response V antigen YPA_CD0030 IPR036139 YPA_CD0030 YPA_CD0031 IPR005415 Type III secretion system, low calcium response, chaperone LcrH/SycD YPA_CD0031 IPR011716 Tetratricopeptide TPR-3 YPA_CD0031 IPR011990 Tetratricopeptide-like helical domain YPA_CD0031 IPR016379 Type III secretion system, low calcium response, chaperone LcrH/SycD, subgroup YPA_CD0032 IPR006972 Secretion system effector C, SseC-like YPA_CD0033 IPR008898 YopD-like YPA_CD0035 IPR032874 YPA_CD0035 YPA_CD0037 IPR032675 YPA_CD0037 YPA_CD0038 IPR001207 Transposase, mutator type YPA_CD0041 IPR010261 Tir chaperone protein (CesT) family YPA_CD0042 IPR003951 Peptidase C58, Yersinia/Haemophilus virulence surface antigen YPA_CD0042 IPR006473 Peptidase C58, YopT-type domain YPA_CD0042 IPR038765 YPA_CD0042 YPA_CD0044 IPR008874 Enterobacterial TraT complement resistance YPA_CD0045 IPR002514 Transposase IS3/IS911family YPA_CD0045 IPR009057 Homeodomain-like YPA_CD0046 IPR012337 Ribonuclease H-like domain YPA_CD0046 IPR025948 HTH-like domain YPA_CD0047 IPR001584 Integrase, catalytic core YPA_CD0047 IPR012337 Ribonuclease H-like domain YPA_CD0048 IPR000551 MerR-type HTH domain YPA_CD0048 IPR009061 DNA binding domain, putative YPA_CD0048 IPR025669 AAA domain YPA_CD0048 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPA_CD0049 IPR003115 ParB/Sulfiredoxin YPA_CD0049 IPR004437 ParB/RepB/Spo0J partition protein family YPA_CD0049 IPR036086 YPA_CD0049 YPA_CD0050 IPR010985 Ribbon-helix-helix YPA_CD0050 IPR022789 Uncharacterised protein family UPF0156/MetJ /Arc repressor YPA_CD0050 IPR038296 YPA_CD0050 YPA_CD0051 IPR003537 Yersinia virulence determinant YopE YPA_CD0051 IPR014773 Virulence factor YopE uncharacterised domain YPA_CD0051 IPR015110 YopE, N-terminal domain YPA_CD0051 IPR037168 YPA_CD0051 YPA_CD0052 IPR005416 Type III secretion chaperone SycE YPA_CD0052 IPR010261 Tir chaperone protein (CesT) family YPA_CD0053 IPR001584 Integrase, catalytic core YPA_CD0053 IPR012337 Ribonuclease H-like domain YPA_CD0053 IPR036397 YPA_CD0053 YPA_CD0054 IPR001584 Integrase, catalytic core YPA_CD0054 IPR012337 Ribonuclease H-like domain YPA_CD0055 IPR002611 IstB-like ATP-binding protein YPA_CD0055 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPA_CD0056 IPR010261 Tir chaperone protein (CesT) family YPA_CD0057 IPR001584 Integrase, catalytic core YPA_CD0057 IPR012337 Ribonuclease H-like domain YPA_CD0057 IPR025948 HTH-like domain YPA_CD0057 IPR036397 YPA_CD0057 YPA_CD0058 IPR002514 Transposase IS3/IS911family YPA_CD0058 IPR009057 Homeodomain-like YPA_CD0059 IPR006118 Recombinase, conserved site YPA_CD0059 IPR006119 Resolvase, N-terminal YPA_CD0059 IPR006120 Resolvase, HTH domain YPA_CD0059 IPR009057 Homeodomain-like YPA_CD0059 IPR036162 YPA_CD0059 YPA_CD0061 IPR002513 Tn3 transposase DDE domain YPA_CD0061 IPR025296 Domain of unknown function DUF4158 YPA_CD0062 IPR005594 YadA-like, C-terminal YPA_CD0062 IPR008126 Outer membrane adhesion, Yersinia YPA_CD0062 IPR008635 Coiled stalk of trimeric autotransporter adhesin YPA_CD0062 IPR008640 Head domain of trimeric autotransporter adhesin YPA_CD0062 IPR011049 Serralysin-like metalloprotease, C-terminal YPA_CD0063 IPR002514 Transposase IS3/IS911family YPA_CD0063 IPR009057 Homeodomain-like YPA_CD0064 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPA_CD0065 IPR002514 Transposase IS3/IS911family YPA_CD0065 IPR009057 Homeodomain-like YPA_CD0066 IPR025948 HTH-like domain YPA_CD0067 IPR001736 Phospholipase D/Transphosphatidylase YPA_CD0067 IPR025202 Phospholipase D-like domain YPA_CD0068 IPR019661 Replication regulatory protein RepA2 YPA_CD0069 IPR003446 Plasmid replication initiation, RepA YPA_CD0069 IPR017837 Plasmid replication initiator, RepA, IncFII type YPA_CD0070 IPR001584 Integrase, catalytic core YPA_CD0070 IPR012337 Ribonuclease H-like domain YPA_CD0071 IPR000719 Protein kinase domain YPA_CD0071 IPR003547 Serine/threonine protein kinase, yersinia-type YPA_CD0071 IPR008271 Serine/threonine-protein kinase, active site YPA_CD0071 IPR011009 Protein kinase-like domain YPA_CD0071 IPR019093 Rac1-binding domain YPA_CD0072 IPR005083 Serine/Threonine acetyltransferase, YopJ YPA_CD0073 IPR001584 Integrase, catalytic core YPA_CD0073 IPR012337 Ribonuclease H-like domain YPA_CD0073 IPR036397 YPA_CD0073 YPA_CD0074 IPR039552 YPA_CD0074 YPA_CD0075 IPR000242 Protein-tyrosine phosphatase, receptor/non-receptor type YPA_CD0075 IPR003546 Type III secreted modular tyrosine phosphatase, SptP/YopH YPA_CD0075 IPR003595 Protein-tyrosine phosphatase, catalytic YPA_CD0075 IPR015103 Protein-tyrosine phosphatase, YopH, N-terminal YPA_CD0075 IPR016130 Protein-tyrosine phosphatase, active site YPA_CD0075 IPR029021 Protein-tyrosine phosphatase-like YPA_CD0075 IPR036484 YPA_CD0075 YPA_CD0077 IPR001584 Integrase, catalytic core YPA_CD0077 IPR012337 Ribonuclease H-like domain YPA_CD0079 IPR009863 Type III secretion protein, LcrG YPA_CD0080 IPR002514 Transposase IS3/IS911family YPA_CD0080 IPR009057 Homeodomain-like YPA_CD0081 IPR012671 Type III secretion system, secretion protein E YPA_CD0085 IPR007712 Toxin-antitoxin system, RelE/ParE toxin family YPA_CD0085 IPR028344 Toxin-antitoxin system, toxin component ParE1/4 YPA_CD0085 IPR035093 YPA_CD0085 YPA_MT0001 IPR001584 Integrase, catalytic core YPA_MT0001 IPR006120 Resolvase, HTH domain YPA_MT0001 IPR009057 Homeodomain-like YPA_MT0001 IPR012337 Ribonuclease H-like domain YPA_MT0002 IPR001270 ClpA/B family YPA_MT0002 IPR002611 IstB-like ATP-binding protein YPA_MT0002 IPR003593 AAA+ ATPase domain YPA_MT0002 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPA_MT0002 IPR028350 DNA replication protein DnaC/insertion sequence putative ATP-binding protein YPA_MT0003 IPR003458 Bacteriophage T4, Gp38, tail fibre assembly YPA_MT0004 IPR005003 Bacteriophage lambda, Stf, side tail fibre-repeat-1 YPA_MT0004 IPR005068 Bacteriophage lambda, Stf, side tail fibre-repeat-2 YPA_MT0004 IPR011083 Phage tail collar domain YPA_MT0004 IPR037053 YPA_MT0004 YPA_MT0005 IPR025484 Domain of unknown function DUF4376 YPA_MT0006 IPR013783 Immunoglobulin-like fold YPA_MT0006 IPR015406 Domain of unknown function DUF1983 YPA_MT0006 IPR021034 Domain of unknown function, DUF3672 YPA_MT0006 IPR032876 YPA_MT0006 YPA_MT0006 IPR036116 YPA_MT0006 YPA_MT0008 IPR000064 Endopeptidase, NLPC/P60 domain YPA_MT0008 IPR000555 JAB1/MPN/MOV34 metalloenzyme domain YPA_MT0008 IPR028090 JAB domain, prokaryotic YPA_MT0008 IPR038765 YPA_MT0008 YPA_MT0009 IPR006487 Bacteriophage lambda, GpL, minor tail YPA_MT0010 IPR010265 Bacteriophage lambda, GpM, minor tail YPA_MT0011 IPR006431 Bacteriophage lambda, GpH, tail tape measure, C-terminal YPA_MT0012 IPR013491 Caudovirus, tape measure, N-terminal YPA_MT0015 IPR003343 Bacterial Ig-like, group 2 YPA_MT0015 IPR008964 Invasin/intimin cell-adhesion YPA_MT0021 IPR003343 Bacterial Ig-like, group 2 YPA_MT0021 IPR008964 Invasin/intimin cell-adhesion YPA_MT0025 IPR004921 Terminase, large subunit YPA_MT0025 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPA_MT0028 IPR016181 Acyl-CoA N-acyltransferase YPA_MT0030 IPR003439 ABC transporter-like YPA_MT0030 IPR003593 AAA+ ATPase domain YPA_MT0030 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 YPA_MT0030 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPA_MT0031 IPR003115 ParB/Sulfiredoxin YPA_MT0031 IPR036086 YPA_MT0031 YPA_MT0032 IPR003115 ParB/Sulfiredoxin YPA_MT0032 IPR036086 YPA_MT0032 YPA_MT0033 IPR001650 Helicase, C-terminal YPA_MT0033 IPR011545 DEAD/DEAH box helicase domain YPA_MT0033 IPR014001 Helicase, superfamily 1/2, ATP-binding domain YPA_MT0033 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPA_MT0036 IPR003223 Flagellin phase1 repressor YPA_MT0038 IPR002686 Transposase IS200-like YPA_MT0038 IPR036515 YPA_MT0038 YPA_MT0039 IPR012337 Ribonuclease H-like domain YPA_MT0039 IPR036397 YPA_MT0039 YPA_MT0040 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPA_MT0040 IPR038729 YPA_MT0040 YPA_MT0041 IPR004843 Calcineurin-like phosphoesterase domain, apaH type YPA_MT0041 IPR029052 Metallo-dependent phosphatase-like YPA_MT0042 IPR001638 Extracellular solute-binding protein, family 3 YPA_MT0042 IPR015168 SsuA/THI5-like YPA_MT0044 IPR000525 Initiator Rep protein YPA_MT0049 IPR001584 Integrase, catalytic core YPA_MT0049 IPR006120 Resolvase, HTH domain YPA_MT0049 IPR009057 Homeodomain-like YPA_MT0049 IPR012337 Ribonuclease H-like domain YPA_MT0050 IPR001270 ClpA/B family YPA_MT0050 IPR002611 IstB-like ATP-binding protein YPA_MT0050 IPR003593 AAA+ ATPase domain YPA_MT0050 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPA_MT0050 IPR028350 DNA replication protein DnaC/insertion sequence putative ATP-binding protein YPA_MT0051 IPR001107 Band 7 protein YPA_MT0052 IPR013765 DNA recombination and repair protein RecA YPA_MT0052 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPA_MT0054 IPR002421 5'-3' exonuclease, N-terminal YPA_MT0054 IPR008918 Helix-hairpin-helix motif, class 2 YPA_MT0054 IPR020045 5'-3' exonuclease, C-terminal domain YPA_MT0054 IPR020046 5'-3' exonuclease, alpha-helical arch, N-terminal YPA_MT0054 IPR029060 PIN domain-like YPA_MT0054 IPR036279 YPA_MT0054 YPA_MT0059 IPR003141 Polymerase/histidinol phosphatase, N-terminal YPA_MT0059 IPR004013 PHP, C-terminal YPA_MT0059 IPR004805 DNA polymerase III, alpha subunit YPA_MT0059 IPR011708 Bacterial DNA polymerase III, alpha subunit YPA_MT0059 IPR029460 DNA polymerase, helix-hairpin-helix motif YPA_MT0059 IPR036895 YPA_MT0059 YPA_MT0060 IPR011704 ATPase, dynein-related, AAA domain YPA_MT0060 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPA_MT0061 IPR006538 Cobalt chelatase, CobT subunit YPA_MT0061 IPR025861 Cobalamin biosynthesis protein CobT VWA domain YPA_MT0061 IPR036465 YPA_MT0061 YPA_MT0062 IPR001270 ClpA/B family YPA_MT0062 IPR002611 IstB-like ATP-binding protein YPA_MT0062 IPR003593 AAA+ ATPase domain YPA_MT0062 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPA_MT0062 IPR028350 DNA replication protein DnaC/insertion sequence putative ATP-binding protein YPA_MT0063 IPR001584 Integrase, catalytic core YPA_MT0063 IPR006120 Resolvase, HTH domain YPA_MT0063 IPR009057 Homeodomain-like YPA_MT0063 IPR012337 Ribonuclease H-like domain YPA_MT0064 IPR006538 Cobalt chelatase, CobT subunit YPA_MT0066 IPR011010 DNA breaking-rejoining enzyme, catalytic core YPA_MT0068 IPR010998 Integrase, Lambda-type, N-terminal YPA_MT0068 IPR011010 DNA breaking-rejoining enzyme, catalytic core YPA_MT0069 IPR000015 Outer membrane usher protein YPA_MT0069 IPR018030 Fimbrial membrane usher, conserved site YPA_MT0069 IPR025885 PapC, N-terminal domain YPA_MT0069 IPR025949 PapC-like, C-terminal domain YPA_MT0069 IPR037224 YPA_MT0069 YPA_MT0070 IPR001829 Pili assembly chaperone, bacterial YPA_MT0070 IPR008962 PapD-like YPA_MT0070 IPR013783 Immunoglobulin-like fold YPA_MT0070 IPR016147 PapD, N-terminal, bacterial YPA_MT0070 IPR016148 Pili assembly chaperone, C-terminal domain YPA_MT0070 IPR018046 Pili assembly chaperone, conserved site YPA_MT0070 IPR036316 YPA_MT0070 YPA_MT0071 IPR001207 Transposase, mutator type YPA_MT0072 IPR002525 Transposase, IS111A/IS1328/IS1533, N-terminal YPA_MT0072 IPR003346 Transposase, IS116/IS110/IS902 YPA_MT0074 IPR000477 Reverse transcriptase domain YPA_MT0075 IPR001736 Phospholipase D/Transphosphatidylase YPA_MT0076 IPR025202 Phospholipase D-like domain YPA_MT0078 IPR006842 Transposase (putative), YhgA-like YPA_MT0078 IPR010106 Conserved hypothetical protein CHP01784 YPA_MT0079 IPR006118 Recombinase, conserved site YPA_MT0079 IPR006119 Resolvase, N-terminal YPA_MT0079 IPR036162 YPA_MT0079 YPA_MT0080 IPR006442 Type II toxin-antitoxin system, antitoxin Phd/YefM YPA_MT0080 IPR036165 YPA_MT0080 YPA_MT0081 IPR025669 AAA domain YPA_MT0081 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPA_MT0082 IPR003115 ParB/Sulfiredoxin YPA_MT0082 IPR004437 ParB/RepB/Spo0J partition protein family YPA_MT0082 IPR014884 ParB protein family, C-terminal YPA_MT0083 IPR003593 AAA+ ATPase domain YPA_MT0083 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPA_MT0084 IPR001091 Restriction/modification DNA-methylase YPA_MT0084 IPR002052 DNA methylase, N-6 adenine-specific, conserved site YPA_MT0084 IPR002941 DNA methylase N-4/N-6 YPA_MT0084 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase-like YPA_MT0086 IPR009811 Protein of unknown function DUF1380 YPA_MT0088 IPR009899 Antirestriction YPA_MT0089 IPR009253 Protein of unknown function DUF905 YPA_MT0089 IPR038612 YPA_MT0089 YPA_MT0090 IPR003115 ParB/Sulfiredoxin YPA_MT0090 IPR036086 YPA_MT0090 YPA_MT0095 IPR008966 Adhesion domain YPA_MT0095 IPR015335 Capsule antigen, Caf1 YPA_MT0095 IPR038699 YPA_MT0095 YPA_MT0096 IPR009057 Homeodomain-like YPA_MT0096 IPR011256 Regulatory factor, effector binding domain YPA_MT0096 IPR018060 DNA binding HTH domain, AraC-type YPA_MT0096 IPR018062 HTH domain AraC-type, conserved site YPA_MT0096 IPR020449 Transcription regulator HTH, AraC- type YPA_MT0096 IPR029442 GyrI-like small molecule binding domain YPA_MT0098 IPR025188 Domain of unknown function DUF4113 YPA_PCP0001 IPR001584 Integrase, catalytic core YPA_PCP0001 IPR006120 Resolvase, HTH domain YPA_PCP0001 IPR009057 Homeodomain-like YPA_PCP0001 IPR012337 Ribonuclease H-like domain YPA_PCP0002 IPR001270 ClpA/B family YPA_PCP0002 IPR002611 IstB-like ATP-binding protein YPA_PCP0002 IPR003593 AAA+ ATPase domain YPA_PCP0002 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPA_PCP0002 IPR028350 DNA replication protein DnaC/insertion sequence putative ATP-binding protein YPA_PCP0003 IPR023346 Lysozyme-like domain YPA_PCP0003 IPR031922 YPA_PCP0003 YPA_PCP0005 IPR000036 Peptidase A26, omptin YPA_PCP0005 IPR020079 Peptidase A26, omptin, conserved site YPA_PCP0005 IPR020080 Outer membrane adhesin/peptidase omptin YPA_PCP0006 IPR001387 Cro/C1-type helix-turn-helix domain YPA_PCP0006 IPR010982 Lambda repressor-like, DNA-binding domain YPA_PCP0006 IPR039554 YPA_PCP0006 YPA_PCP0007 IPR009241 Addiction module killer protein YPA_PCP0008 IPR000769 Regulatory protein Rop YPA_PCP0008 IPR035962 YPA_PCP0008 YPA_PCP0009 IPR000769 Regulatory protein Rop YPA_PCP0009 IPR035962 YPA_PCP0009