YPA_0001	PF00258	Flavodoxin
YPA_0002	PF01037	AsnC family
YPA_0002	PF13404	AsnC-type helix-turn-helix domain
YPA_0003	PF03590	Aspartate-ammonia ligase
YPA_0004	PF05762	VWA domain containing CoxE-like protein
YPA_0005	PF07728	AAA domain (dynein-related subfamily)
YPA_0005	PF12592	Protein of unknown function (DUF3763)
YPA_0006	PF00665	Integrase core domain
YPA_0006	PF02796	Helix-turn-helix domain of resolvase
YPA_0007	PF01695	IstB-like ATP binding protein
YPA_0009	PF02705	YPA_0009
YPA_0010	PF05025	RbsD / FucU transport protein family
YPA_0011	PF00294	pfkB family carbohydrate kinase
YPA_0013	PF07690	Major Facilitator Superfamily
YPA_0014	PF00392	Bacterial regulatory proteins, gntR family
YPA_0014	PF07729	FCD domain
YPA_0015	PF04204	Homoserine O-succinyltransferase
YPA_0017	PF01274	Malate synthase
YPA_0018	PF00463	Isocitrate lyase family
YPA_0019	PF06315	Isocitrate dehydrogenase kinase/phosphatase (AceK)
YPA_0020	PF01614	Bacterial transcriptional regulator
YPA_0021	PF00809	Pterin binding enzyme
YPA_0021	PF02310	B12 binding domain
YPA_0021	PF02574	Homocysteine S-methyltransferase
YPA_0021	PF02607	B12 binding domain
YPA_0021	PF02965	Vitamin B12 dependent methionine synthase, activation domain
YPA_0022	PF05860	haemagglutination activity domain
YPA_0022	PF13332	YPA_0022
YPA_0023	PF03865	Haemolysin secretion/activation protein ShlB/FhaC/HecB
YPA_0023	PF08479	POTRA domain, ShlB-type
YPA_0023	PF17287	YPA_0023
YPA_0025	PF00696	Amino acid kinase family
YPA_0026	PF00342	Phosphoglucose isomerase
YPA_0027	PF06146	YPA_0027
YPA_0028	PF00528	Binding-protein-dependent transport system inner membrane component
YPA_0029	PF00528	Binding-protein-dependent transport system inner membrane component
YPA_0029	PF14785	Maltose transport system permease protein MalF P2 domain
YPA_0030	PF13416	Bacterial extracellular solute-binding protein
YPA_0032	PF00005	ABC transporter
YPA_0032	PF08402	TOBE domain
YPA_0033	PF02264	LamB porin
YPA_0034	PF07148	YPA_0034
YPA_0036	PF05638	Protein of unknown function (DUF796)
YPA_0037	PF05591	YPA_0037
YPA_0038	PF05943	YPA_0038
YPA_0039	PF04965	Gene 25-like lysozyme
YPA_0040	PF05947	YPA_0040
YPA_0041	PF00665	Integrase core domain
YPA_0041	PF13276	YPA_0041
YPA_0042	PF13518	Helix-turn-helix domain
YPA_0043	PF00312	Ribosomal protein S15
YPA_0044	PF01509	TruB family pseudouridylate synthase (N terminal domain)
YPA_0044	PF09157	Pseudouridine synthase II TruB, C-terminal
YPA_0044	PF16198	YPA_0044
YPA_0045	PF02033	Ribosome-binding factor A
YPA_0046	PF00009	Elongation factor Tu GTP binding domain
YPA_0046	PF03144	Elongation factor Tu domain 2
YPA_0046	PF04760	Translation initiation factor IF-2, N-terminal region
YPA_0046	PF08364	YPA_0046
YPA_0046	PF11987	Translation-initiation factor 2
YPA_0047	PF08529	NusA N-terminal domain
YPA_0047	PF13184	NusA-like KH domain
YPA_0047	PF14520	Helix-hairpin-helix domain
YPA_0048	PF02576	Uncharacterised BCR, YhbC family COG0779
YPA_0048	PF17384	YPA_0048
YPA_0049	PF03840	Preprotein translocase SecG subunit
YPA_0050	PF00408	Phosphoglucomutase/phosphomannomutase, C-terminal domain
YPA_0050	PF02878	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I
YPA_0050	PF02879	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II
YPA_0050	PF02880	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III
YPA_0051	PF00809	Pterin binding enzyme
YPA_0052	PF00004	ATPase family associated with various cellular activities (AAA)
YPA_0052	PF01434	Peptidase family M41
YPA_0052	PF06480	FtsH Extracellular
YPA_0053	PF01728	FtsJ-like methyltransferase
YPA_0054	PF01985	CRS1 / YhbY (CRM) domain
YPA_0055	PF01272	Transcription elongation factor, GreA/GreB, C-term
YPA_0055	PF03449	Transcription elongation factor, N-terminal
YPA_0056	PF02113	D-Ala-D-Ala carboxypeptidase 3 (S13) family
YPA_0057	PF00072	Response regulator receiver domain
YPA_0057	PF00486	Transcriptional regulatory protein, C terminal
YPA_0058	PF00512	His Kinase A (phospho-acceptor) domain
YPA_0058	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
YPA_0059	PF01018	GTP1/OBG
YPA_0059	PF01926	50S ribosome-binding GTPase
YPA_0060	PF00892	EamA-like transporter family
YPA_0061	PF01016	Ribosomal L27 protein
YPA_0062	PF00829	Ribosomal prokaryotic L21 protein
YPA_0063	PF00348	Polyprenyl synthetase
YPA_0064	PF02316	Mu DNA-binding domain
YPA_0065	PF13693	Winged helix-turn-helix DNA-binding
YPA_0066	PF00056	lactate/malate dehydrogenase, NAD binding domain
YPA_0066	PF02866	lactate/malate dehydrogenase, alpha/beta C-terminal domain
YPA_0067	PF01316	Arginine repressor, DNA binding domain
YPA_0067	PF02863	Arginine repressor, C-terminal domain
YPA_0068	PF07338	Protein of unknown function (DUF1471)
YPA_0069	PF01225	Mur ligase family, catalytic domain
YPA_0069	PF02875	Mur ligase family, glutamate ligase domain
YPA_0069	PF08245	Mur ligase middle domain
YPA_0070	PF00316	Fructose-1-6-bisphosphatase
YPA_0071	PF00719	Inorganic pyrophosphatase
YPA_0072	PF06094	AIG2-like family
YPA_0073	PF04357	YPA_0073
YPA_0074	PF01103	Surface antigen
YPA_0074	PF07244	Surface antigen variable number repeat
YPA_0074	PF17243	YPA_0074
YPA_0075	PF01625	Peptide methionine sulfoxide reductase
YPA_0076	PF00571	CBS domain
YPA_0076	PF01595	YPA_0076
YPA_0076	PF03471	Transporter associated domain
YPA_0077	PF06526	Protein of unknown function (DUF1107)
YPA_0078	PF09695	YPA_0078
YPA_0079	PF00459	Inositol monophosphatase family
YPA_0080	PF00149	Calcineurin-like phosphoesterase
YPA_0080	PF02872	5'-nucleotidase, C-terminal domain
YPA_0081	PF01814	Hemerythrin HHE cation binding domain
YPA_0081	PF04405	YPA_0081
YPA_0082	PF00254	FKBP-type peptidyl-prolyl cis-trans isomerase
YPA_0082	PF01346	Domain amino terminal to FKBP-type peptidyl-prolyl isomerase
YPA_0083	PF04225	Opacity-associated protein A LysM-like domain
YPA_0083	PF08525	YPA_0083
YPA_0084	PF12582	YPA_0084
YPA_0085	PF01797	Transposase IS200 like
YPA_0086	PF01281	Ribosomal protein L9, N-terminal domain
YPA_0086	PF03948	Ribosomal protein L9, C-terminal domain
YPA_0087	PF01084	Ribosomal protein S18
YPA_0088	PF00436	Single-strand binding protein family
YPA_0089	PF01250	Ribosomal protein S6
YPA_0091	PF00326	Prolyl oligopeptidase family
YPA_0092	PF00665	Integrase core domain
YPA_0092	PF02796	Helix-turn-helix domain of resolvase
YPA_0093	PF01695	IstB-like ATP binding protein
YPA_0095	PF00311	Phosphoenolpyruvate carboxylase
YPA_0096	PF01546	Peptidase family M20/M25/M40
YPA_0096	PF07687	Peptidase dimerisation domain
YPA_0097	PF01118	Semialdehyde dehydrogenase, NAD binding domain
YPA_0097	PF02774	Semialdehyde dehydrogenase, dimerisation domain
YPA_0098	PF00696	Amino acid kinase family
YPA_0099	PF00206	Lyase
YPA_0099	PF14698	Argininosuccinate lyase C-terminal
YPA_0100	PF00593	TonB dependent receptor
YPA_0100	PF07715	TonB-dependent Receptor Plug Domain
YPA_0101	PF06438	Heme-binding protein A (HasA)
YPA_0102	PF00005	ABC transporter
YPA_0102	PF00664	ABC transporter transmembrane region
YPA_0103	PF13437	HlyD family secretion protein
YPA_0103	PF13533	Biotin-lipoyl like
YPA_0104	PF03544	Gram-negative bacterial TonB protein C-terminal
YPA_0105	PF02852	Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain
YPA_0105	PF07992	Pyridine nucleotide-disulphide oxidoreductase
YPA_0106	PF00462	Glutaredoxin
YPA_0106	PF08534	Redoxin
YPA_0107	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
YPA_0107	PF03466	LysR substrate binding domain
YPA_0108	PF02852	Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain
YPA_0108	PF07992	Pyridine nucleotide-disulphide oxidoreductase
YPA_0109	PF00440	Bacterial regulatory proteins, tetR family
YPA_0110	PF07226	YPA_0110
YPA_0111	PF05958	tRNA (Uracil-5-)-methyltransferase
YPA_0112	PF00593	TonB dependent receptor
YPA_0112	PF07715	TonB-dependent Receptor Plug Domain
YPA_0113	PF01177	Asp/Glu/Hydantoin racemase
YPA_0114	PF13407	Periplasmic binding protein domain
YPA_0115	PF00005	ABC transporter
YPA_0116	PF02653	YPA_0116
YPA_0117	PF02653	YPA_0117
YPA_0118	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
YPA_0118	PF03466	LysR substrate binding domain
YPA_0119	PF04219	YPA_0119
YPA_0120	PF01078	Magnesium chelatase, subunit ChlI
YPA_0120	PF13335	YPA_0120
YPA_0120	PF13541	Subunit ChlI of Mg-chelatase
YPA_0121	PF00205	Thiamine pyrophosphate enzyme, central domain
YPA_0121	PF02775	Thiamine pyrophosphate enzyme, C-terminal TPP binding domain
YPA_0121	PF02776	Thiamine pyrophosphate enzyme, N-terminal TPP binding domain
YPA_0122	PF13710	ACT domain
YPA_0123	PF01063	Aminotransferase class IV
YPA_0124	PF00920	Dehydratase family
YPA_0125	PF00291	Pyridoxal-phosphate dependent enzyme
YPA_0125	PF00585	C-terminal regulatory domain of Threonine dehydratase
YPA_0126	PF06092	YPA_0126
YPA_0127	PF06092	YPA_0127
YPA_0128	PF11692	YPA_0128
YPA_0129	PF11692	YPA_0129
YPA_0131	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
YPA_0131	PF03466	LysR substrate binding domain
YPA_0132	PF01450	Acetohydroxy acid isomeroreductase, catalytic domain
YPA_0132	PF07991	Acetohydroxy acid isomeroreductase, catalytic domain
YPA_0133	PF06958	S-type Pyocin
YPA_0136	PF01320	Colicin immunity protein / pyocin immunity protein
YPA_0138	PF00345	Pili and flagellar-assembly chaperone, PapD N-terminal domain
YPA_0138	PF02753	Pili assembly chaperone PapD, C-terminal domain
YPA_0139	PF00419	Fimbrial protein
YPA_0140	PF00577	Outer membrane usher protein
YPA_0140	PF13953	PapC C-terminal domain
YPA_0140	PF13954	PapC N-terminal domain
YPA_0141	PF00345	Pili and flagellar-assembly chaperone, PapD N-terminal domain
YPA_0141	PF02753	Pili assembly chaperone PapD, C-terminal domain
YPA_0142	PF16970	YPA_0142
YPA_0143	PF00872	YPA_0143
YPA_0144	PF05096	Glutamine cyclotransferase
YPA_0145	PF13616	PPIC-type PPIASE domain
YPA_0146	PF00580	UvrD/REP helicase N-terminal domain
YPA_0146	PF13361	UvrD-like helicase C-terminal domain
YPA_0147	PF02541	Ppx/GppA phosphatase family
YPA_0148	PF02541	Ppx/GppA phosphatase family
YPA_0149	PF00270	DEAD/DEAH box helicase
YPA_0149	PF00271	Helicase conserved C-terminal domain
YPA_0150	PF00085	Thioredoxin
YPA_0151	PF00006	ATP synthase alpha/beta family, nucleotide-binding domain
YPA_0151	PF07497	Rho termination factor, RNA-binding domain
YPA_0151	PF07498	Rho termination factor, N-terminal domain
YPA_0152	PF00953	Glycosyl transferase family 4
YPA_0153	PF02706	Chain length determinant protein
YPA_0154	PF02350	UDP-N-acetylglucosamine 2-epimerase
YPA_0155	PF00984	UDP-glucose/GDP-mannose dehydrogenase family, central domain
YPA_0155	PF03720	UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain
YPA_0155	PF03721	UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain
YPA_0156	PF16363	YPA_0156
YPA_0157	PF00483	Nucleotidyl transferase
YPA_0158	PF00583	Acetyltransferase (GNAT) family
YPA_0159	PF01041	DegT/DnrJ/EryC1/StrS aminotransferase family
YPA_0160	PF01943	YPA_0160
YPA_0161	PF07429	YPA_0161
YPA_0162	PF06899	YPA_0162
YPA_0163	PF03808	YPA_0163
YPA_0164	PF00324	Amino acid permease
YPA_0165	PF00665	Integrase core domain
YPA_0165	PF02796	Helix-turn-helix domain of resolvase
YPA_0166	PF01695	IstB-like ATP binding protein
YPA_0168	PF01797	Transposase IS200 like
YPA_0169	PF07219	YPA_0169
YPA_0170	PF04375	YPA_0170
YPA_0171	PF02602	Uroporphyrinogen-III synthase HemD
YPA_0172	PF01379	Porphobilinogen deaminase, dipyromethane cofactor binding domain
YPA_0172	PF03900	Porphobilinogen deaminase, C-terminal domain
YPA_0174	PF01295	YPA_0174
YPA_0174	PF12633	YPA_0174
YPA_0175	PF01491	Frataxin-like domain
YPA_0176	PF13627	YPA_0176
YPA_0177	PF01678	Diaminopimelate epimerase
YPA_0178	PF04340	Protein of unknown function, DUF484
YPA_0179	PF00589	Phage integrase family
YPA_0179	PF02899	Phage integrase, N-terminal SAM-like domain
YPA_0180	PF00702	haloacid dehalogenase-like hydrolase
YPA_0181	PF00580	UvrD/REP helicase N-terminal domain
YPA_0181	PF13361	UvrD-like helicase C-terminal domain
YPA_0182	PF00440	Bacterial regulatory proteins, tetR family
YPA_0183	PF06792	Uncharacterised protein family (UPF0261)
YPA_0184	PF09370	TIM-barrel signal transduction protein
YPA_0185	PF01544	CorA-like Mg2+ transporter protein
YPA_0186	PF00892	EamA-like transporter family
YPA_0187	PF03061	Thioesterase superfamily
YPA_0188	PF02253	Phospholipase A1
YPA_0189	PF00270	DEAD/DEAH box helicase
YPA_0189	PF00271	Helicase conserved C-terminal domain
YPA_0189	PF00570	HRDC domain
YPA_0189	PF09382	RQC domain
YPA_0189	PF16124	YPA_0189
YPA_0190	PF01810	YPA_0190
YPA_0191	PF01810	YPA_0191
YPA_0192	PF12146	Putative lysophospholipase
YPA_0193	PF08282	haloacid dehalogenase-like hydrolase
YPA_0194	PF03272	YPA_0194
YPA_0195	PF03009	Glycerophosphoryl diester phosphodiesterase family
YPA_0196	PF01266	FAD dependent oxidoreductase
YPA_0196	PF04324	BFD-like [2Fe-2S] binding domain
YPA_0197	PF00890	FAD binding domain
YPA_0198	PF02754	YPA_0198
YPA_0198	PF13183	4Fe-4S dicluster domain
YPA_0199	PF08786	Domain of unknown function (DUF1795)
YPA_0200	PF02592	YPA_0200
YPA_0201	PF01206	Sulfurtransferase TusA
YPA_0202	PF00122	E1-E2 ATPase
YPA_0202	PF00403	Heavy-metal-associated domain
YPA_0202	PF00702	haloacid dehalogenase-like hydrolase
YPA_0203	PF07947	YPA_0203
YPA_0204	PF08850	YPA_0204
YPA_0205	PF10694	Protein of unknown function (DUF2500)
YPA_0206	PF06611	YPA_0206
YPA_0207	PF03602	Conserved hypothetical protein 95
YPA_0208	PF00448	SRP54-type protein, GTPase domain
YPA_0208	PF02881	SRP54-type protein, helical bundle domain
YPA_0209	PF00005	ABC transporter
YPA_0210	PF02687	YPA_0210
YPA_0211	PF00140	Sigma-70 factor, region 1
YPA_0211	PF04542	Sigma-70 region 2
YPA_0211	PF04545	Sigma-70, region 4
YPA_0212	PF01797	Transposase IS200 like
YPA_0213	PF12568	Acetyltransferase (GNAT) domain
YPA_0214	PF13458	Periplasmic binding protein
YPA_0215	PF01695	IstB-like ATP binding protein
YPA_0216	PF00665	Integrase core domain
YPA_0216	PF02796	Helix-turn-helix domain of resolvase
YPA_0217	PF02653	YPA_0217
YPA_0218	PF02653	YPA_0218
YPA_0218	PF11862	YPA_0218
YPA_0219	PF00005	ABC transporter
YPA_0219	PF12399	Branched-chain amino acid ATP-binding cassette transporter
YPA_0220	PF00005	ABC transporter
YPA_0226	PF16967	YPA_0226
YPA_0227	PF04449	CS1 type fimbrial major subunit
YPA_0228	PF13416	Bacterial extracellular solute-binding protein
YPA_0229	PF00528	Binding-protein-dependent transport system inner membrane component
YPA_0230	PF00528	Binding-protein-dependent transport system inner membrane component
YPA_0231	PF00005	ABC transporter
YPA_0231	PF08402	TOBE domain
YPA_0232	PF03009	Glycerophosphoryl diester phosphodiesterase family
YPA_0233	PF03547	YPA_0233
YPA_0234	PF00892	EamA-like transporter family
YPA_0235	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
YPA_0235	PF03466	LysR substrate binding domain
YPA_0236	PF01717	Cobalamin-independent synthase, Catalytic domain
YPA_0236	PF08267	Cobalamin-independent synthase, N-terminal domain
YPA_0237	PF01738	Dienelactone hydrolase family
YPA_0238	PF01048	Phosphorylase superfamily
YPA_0239	PF13350	Tyrosine phosphatase family
YPA_0240	PF02554	YPA_0240
YPA_0240	PF13722	YPA_0240
YPA_0241	PF09335	YPA_0241
YPA_0242	PF02646	YPA_0242
YPA_0243	PF01209	ubiE/COQ5 methyltransferase family
YPA_0244	PF02036	SCP-2 sterol transfer family
YPA_0245	PF03109	YPA_0245
YPA_0246	PF02416	mttA/Hcf106 family
YPA_0248	PF00902	Sec-independent protein translocase protein (TatC)
YPA_0249	PF01026	TatD related DNase
YPA_0250	PF00665	Integrase core domain
YPA_0250	PF02796	Helix-turn-helix domain of resolvase
YPA_0251	PF01695	IstB-like ATP binding protein
YPA_0252	PF14016	YPA_0252
YPA_0253	PF03737	Demethylmenaquinone methyltransferase
YPA_0254	PF01040	UbiA prenyltransferase family
YPA_0255	PF00004	ATPase family associated with various cellular activities (AAA)
YPA_0255	PF07724	AAA domain (Cdc48 subfamily)
YPA_0255	PF10431	C-terminal, D2-small domain, of ClpB protein
YPA_0256	PF00227	Proteasome subunit
YPA_0257	PF05036	Sporulation related domain
YPA_0258	PF00356	Bacterial regulatory proteins, lacI family
YPA_0258	PF13377	Periplasmic binding protein-like domain
YPA_0259	PF00270	DEAD/DEAH box helicase
YPA_0259	PF00271	Helicase conserved C-terminal domain
YPA_0260	PF01197	Ribosomal protein L31
YPA_0261	PF05360	YPA_0261
YPA_0262	PF01340	Met Apo-repressor, MetJ
YPA_0263	PF01053	Cys/Met metabolism PLP-dependent enzyme
YPA_0264	PF01053	Cys/Met metabolism PLP-dependent enzyme
YPA_0265	PF00696	Amino acid kinase family
YPA_0265	PF00742	Homoserine dehydrogenase
YPA_0265	PF03447	Homoserine dehydrogenase, NAD binding domain
YPA_0266	PF02219	Methylenetetrahydrofolate reductase
YPA_0267	PF00665	Integrase core domain
YPA_0267	PF13276	YPA_0267
YPA_0268	PF13518	Helix-turn-helix domain
YPA_0269	PF13347	MFS/sugar transport protein
YPA_0270	PF00593	TonB dependent receptor
YPA_0270	PF07715	TonB-dependent Receptor Plug Domain
YPA_0271	PF13434	L-lysine 6-monooxygenase (NADPH-requiring)
YPA_0272	PF04183	IucA / IucC family
YPA_0272	PF06276	Ferric iron reductase FhuF-like transporter
YPA_0273	PF13523	Acetyltransferase (GNAT) domain
YPA_0274	PF04183	IucA / IucC family
YPA_0274	PF06276	Ferric iron reductase FhuF-like transporter
YPA_0275	PF04183	IucA / IucC family
YPA_0276	PF07690	Major Facilitator Superfamily
YPA_0277	PF00775	Dioxygenase
YPA_0278	PF10503	Esterase PHB depolymerase
YPA_0279	PF00196	Bacterial regulatory proteins, luxR family
YPA_0279	PF03472	Autoinducer binding domain
YPA_0280	PF00765	Autoinducer synthetase
YPA_0281	PF02517	CAAX protease self-immunity
YPA_0283	PF03811	YPA_0283
YPA_0283	PF12759	YPA_0283
YPA_0284	PF05591	YPA_0284
YPA_0285	PF05943	YPA_0285
YPA_0286	PF05936	YPA_0286
YPA_0287	PF09850	Uncharacterized protein conserved in bacteria (DUF2077)
YPA_0288	PF00691	OmpA family
YPA_0289	PF05638	Protein of unknown function (DUF796)
YPA_0290	PF00004	ATPase family associated with various cellular activities (AAA)
YPA_0290	PF07724	AAA domain (Cdc48 subfamily)
YPA_0290	PF10431	C-terminal, D2-small domain, of ClpB protein
YPA_0291	PF05954	Phage late control gene D protein (GPD)
YPA_0291	PF10106	YPA_0291
YPA_0291	PF13296	YPA_0291
YPA_0293	PF03811	YPA_0293
YPA_0293	PF12759	YPA_0293
YPA_0295	PF03400	YPA_0295
YPA_0296	PF10106	YPA_0296
YPA_0297	PF01551	Peptidase family M23
YPA_0299	PF03811	YPA_0299
YPA_0299	PF12759	YPA_0299
YPA_0300	PF03400	YPA_0300
YPA_0301	PF10106	YPA_0301
YPA_0302	PF00589	Phage integrase family
YPA_0304	PF01276	Orn/Lys/Arg decarboxylase, major domain
YPA_0304	PF03709	Orn/Lys/Arg decarboxylase, N-terminal domain
YPA_0304	PF03711	Orn/Lys/Arg decarboxylase, C-terminal domain
YPA_0305	PF13407	Periplasmic binding protein domain
YPA_0306	PF00005	ABC transporter
YPA_0307	PF02653	YPA_0307
YPA_0308	PF00593	TonB dependent receptor
YPA_0308	PF07715	TonB-dependent Receptor Plug Domain
YPA_0309	PF01497	Periplasmic binding protein
YPA_0310	PF01464	Transglycosylase SLT domain
YPA_0310	PF11873	Domain of unknown function (DUF3393)
YPA_0311	PF04362	Bacterial Fe(2+) trafficking
YPA_0312	PF00633	Helix-hairpin-helix motif
YPA_0312	PF00730	HhH-GPD superfamily base excision DNA repair protein
YPA_0312	PF10576	Iron-sulfur binding domain of endonuclease III
YPA_0312	PF14815	NUDIX domain
YPA_0313	PF02390	Putative methyltransferase
YPA_0314	PF04320	YPA_0314
YPA_0315	PF04960	Glutaminase
YPA_0316	PF11101	YPA_0316
YPA_0317	PF11101	YPA_0317
YPA_0318	PF11713	Peptidase C80 family
YPA_0319	PF04055	Radical SAM superfamily
YPA_0319	PF06969	HemN C-terminal domain
YPA_0320	PF01725	Ham1 family
YPA_0321	PF02594	Uncharacterised ACR, YggU family COG1872
YPA_0322	PF02325	YPA_0322
YPA_0323	PF03807	NADP oxidoreductase coenzyme F420-dependent
YPA_0323	PF14748	Pyrroline-5-carboxylate reductase dimerisation
YPA_0324	PF01168	Alanine racemase, N-terminal domain
YPA_0325	PF00437	Type II/IV secretion system protein
YPA_0326	PF04371	Porphyromonas-type peptidyl-arginine deiminase
YPA_0327	PF00795	Carbon-nitrogen hydrolase
YPA_0328	PF03652	Uncharacterised protein family (UPF0081)
YPA_0329	PF02622	Uncharacterized ACR, COG1678
YPA_0330	PF02951	Prokaryotic glutathione synthetase, N-terminal domain
YPA_0330	PF02955	Prokaryotic glutathione synthetase, ATP-grasp domain
YPA_0331	PF04452	RNA methyltransferase
YPA_0333	PF04231	Endonuclease I
YPA_0334	PF10263	YPA_0334
YPA_0334	PF17283	YPA_0334
YPA_0335	PF00438	S-adenosylmethionine synthetase, N-terminal domain
YPA_0335	PF02772	S-adenosylmethionine synthetase, central domain
YPA_0335	PF02773	S-adenosylmethionine synthetase, C-terminal domain
YPA_0336	PF02784	Pyridoxal-dependent decarboxylase, pyridoxal binding domain
YPA_0337	PF01797	Transposase IS200 like
YPA_0338	PF00355	Rieske [2Fe-2S] domain
YPA_0339	PF01435	Peptidase family M48
YPA_0340	PF00456	Transketolase, thiamine diphosphate binding domain
YPA_0340	PF02779	Transketolase, pyrimidine binding domain
YPA_0340	PF02780	Transketolase, C-terminal domain
YPA_0341	PF01797	Transposase IS200 like
YPA_0342	PF00044	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
YPA_0342	PF02800	Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain
YPA_0343	PF00162	Phosphoglycerate kinase
YPA_0344	PF01116	Fructose-bisphosphate aldolase class-II
YPA_0345	PF00924	Mechanosensitive ion channel
YPA_0345	PF05552	Conserved TM helix
YPA_0346	PF01810	YPA_0346
YPA_0347	PF01695	IstB-like ATP binding protein
YPA_0348	PF00665	Integrase core domain
YPA_0348	PF02796	Helix-turn-helix domain of resolvase
YPA_0349	PF01810	YPA_0349
YPA_0350	PF04402	Protein of unknown function (DUF541)
YPA_0351	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
YPA_0351	PF03466	LysR substrate binding domain
YPA_0352	PF06026	Ribose 5-phosphate isomerase A (phosphoriboisomerase A)
YPA_0353	PF00389	D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
YPA_0353	PF01842	ACT domain
YPA_0353	PF02826	D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
YPA_0354	PF01812	5-formyltetrahydrofolate cyclo-ligase family
YPA_0355	PF05164	Cell division protein ZapA
YPA_0356	PF03695	Uncharacterised protein family (UPF0149)
YPA_0357	PF00557	Metallopeptidase family M24
YPA_0357	PF05195	Aminopeptidase P, N-terminal domain
YPA_0358	PF01494	FAD binding domain
YPA_0359	PF01494	FAD binding domain
YPA_0360	PF01571	Aminomethyltransferase folate-binding domain
YPA_0360	PF08669	Glycine cleavage T-protein C-terminal barrel domain
YPA_0361	PF01597	Glycine cleavage H-protein
YPA_0362	PF02347	Glycine cleavage system P-protein
YPA_0363	PF13924	YPA_0363
YPA_0366	PF03895	YadA-like C-terminal region
YPA_0366	PF05658	Head domain of trimeric autotransporter adhesin
YPA_0366	PF05662	Coiled stalk of trimeric autotransporter adhesin
YPA_0368	PF03006	YPA_0368
YPA_0369	PF09933	YPA_0369
YPA_0370	PF01571	Aminomethyltransferase folate-binding domain
YPA_0371	PF03937	Flavinator of succinate dehydrogenase
YPA_0372	PF07254	YPA_0372
YPA_0373	PF00072	Response regulator receiver domain
YPA_0373	PF00486	Transcriptional regulatory protein, C terminal
YPA_0374	PF00512	His Kinase A (phospho-acceptor) domain
YPA_0374	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
YPA_0374	PF14827	Sensory domain of two-component sensor kinase
YPA_0375	PF06123	YPA_0375
YPA_0376	PF00258	Flavodoxin
YPA_0377	PF00589	Phage integrase family
YPA_0377	PF02899	Phage integrase, N-terminal SAM-like domain
YPA_0378	PF10411	Disulfide bond isomerase protein N-terminus
YPA_0378	PF13098	Thioredoxin-like domain
YPA_0379	PF01368	DHH family
YPA_0379	PF02272	DHHA1 domain
YPA_0380	PF00472	RF-1 domain
YPA_0380	PF03462	PCRF domain
YPA_0381	PF00152	tRNA synthetases class II (D, K and N)
YPA_0381	PF01336	OB-fold nucleic acid binding domain
YPA_0382	PF13356	Domain of unknown function (DUF4102)
YPA_0383	PF01695	IstB-like ATP binding protein
YPA_0384	PF00665	Integrase core domain
YPA_0384	PF02796	Helix-turn-helix domain of resolvase
YPA_0385	PF00589	Phage integrase family
YPA_0388	PF05016	Plasmid stabilisation system protein
YPA_0389	PF01381	Helix-turn-helix
YPA_0390	PF15723	YPA_0390
YPA_0391	PF15731	YPA_0391
YPA_0392	PF03288	Poxvirus D5 protein-like
YPA_0392	PF08273	Zinc-binding domain of primase-helicase
YPA_0392	PF08706	YPA_0392
YPA_0392	PF13362	Toprim domain
YPA_0394	PF05973	YPA_0394
YPA_0395	PF05930	Prophage CP4-57 regulatory protein (AlpA)
YPA_0399	PF02661	Fic/DOC family
YPA_0400	PF05488	PAAR motif
YPA_0400	PF06958	S-type Pyocin
YPA_0401	PF14206	YPA_0401
YPA_0403	PF11340	YPA_0403
YPA_0405	PF05488	PAAR motif
YPA_0406	PF12977	Domain of Unknown Function with PDB structure (DUF3861)
YPA_0407	PF03551	Transcriptional regulator PadR-like family
YPA_0408	PF05708	Orthopoxvirus protein of unknown function (DUF830)
YPA_0410	PF13407	Periplasmic binding protein domain
YPA_0411	PF02653	YPA_0411
YPA_0412	PF00005	ABC transporter
YPA_0413	PF00005	ABC transporter
YPA_0413	PF08402	TOBE domain
YPA_0414	PF13416	Bacterial extracellular solute-binding protein
YPA_0415	PF00528	Binding-protein-dependent transport system inner membrane component
YPA_0416	PF00528	Binding-protein-dependent transport system inner membrane component
YPA_0417	PF07745	Glycosyl hydrolase family 53
YPA_0418	PF02449	Beta-galactosidase
YPA_0418	PF08532	Beta-galactosidase trimerisation domain
YPA_0418	PF08533	Beta-galactosidase C-terminal domain
YPA_0419	PF00367	phosphotransferase system, EIIB
YPA_0420	PF02264	LamB porin
YPA_0421	PF00356	Bacterial regulatory proteins, lacI family
YPA_0421	PF13377	Periplasmic binding protein-like domain
YPA_0422	PF01055	Glycosyl hydrolases family 31
YPA_0422	PF13802	Galactose mutarotase-like
YPA_0422	PF17137	YPA_0422
YPA_0423	PF07690	Major Facilitator Superfamily
YPA_0424	PF00356	Bacterial regulatory proteins, lacI family
YPA_0424	PF13377	Periplasmic binding protein-like domain
YPA_0425	PF01965	DJ-1/PfpI family
YPA_0426	PF01116	Fructose-bisphosphate aldolase class-II
YPA_0427	PF10022	YPA_0427
YPA_0428	PF00884	Sulfatase
YPA_0429	PF04055	Radical SAM superfamily
YPA_0429	PF13186	Iron-sulfur cluster-binding domain
YPA_0430	PF07470	Glycosyl Hydrolase Family 88
YPA_0431	PF13561	Enoyl-(Acyl carrier protein) reductase
YPA_0432	PF01979	Amidohydrolase family
YPA_0433	PF03610	PTS system fructose IIA component
YPA_0434	PF03613	YPA_0434
YPA_0435	PF03609	YPA_0435
YPA_0436	PF03830	PTS system sorbose subfamily IIB component
YPA_0437	PF01380	SIS domain
YPA_0438	PF08013	Tagatose 6 phosphate kinase
YPA_0439	PF00455	YPA_0439
YPA_0439	PF08220	DeoR-like helix-turn-helix domain
YPA_0440	PF00884	Sulfatase
YPA_0441	PF01797	Transposase IS200 like
YPA_0442	PF00665	Integrase core domain
YPA_0442	PF02796	Helix-turn-helix domain of resolvase
YPA_0443	PF01695	IstB-like ATP binding protein
YPA_0445	PF02278	Polysaccharide lyase family 8, super-sandwich domain
YPA_0445	PF02884	Polysaccharide lyase family 8, C-terminal beta-sandwich domain
YPA_0445	PF09092	Lyase, N terminal
YPA_0445	PF09093	Lyase, catalytic
YPA_0446	PF03797	Autotransporter beta-domain
YPA_0447	PF16946	YPA_0447
YPA_0450	PF00484	Carbonic anhydrase
YPA_0452	PF11356	Type IV pilus biogenesis
YPA_0453	PF00263	YPA_0453
YPA_0453	PF03958	Bacterial type II/III secretion system short domain
YPA_0454	PF00437	Type II/IV secretion system protein
YPA_0455	PF00482	Type II secretion system (T2SS), protein F
YPA_0456	PF07963	Prokaryotic N-terminal methylation motif
YPA_0456	PF08334	Type II secretion system (T2SS), protein G
YPA_0457	PF07963	Prokaryotic N-terminal methylation motif
YPA_0458	PF02501	Type II secretion system (T2SS), protein I
YPA_0459	PF07963	Prokaryotic N-terminal methylation motif
YPA_0459	PF11612	Type II secretion system (T2SS), protein J
YPA_0460	PF03934	Type II secretion system (T2SS), protein K
YPA_0461	PF05134	Type II secretion system (T2SS), protein L
YPA_0461	PF12693	GspL periplasmic domain
YPA_0463	PF01478	Type IV leader peptidase family
YPA_0463	PF06750	YPA_0463
YPA_0464	PF09691	Bacterial chaperone lipoprotein (PulS_OutS)
YPA_0465	PF00486	Transcriptional regulatory protein, C terminal
YPA_0467	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
YPA_0467	PF02203	Tar ligand binding domain homologue
YPA_0468	PF01323	DSBA-like thioredoxin domain
YPA_0469	PF00753	Metallo-beta-lactamase superfamily
YPA_0470	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
YPA_0470	PF03466	LysR substrate binding domain
YPA_0471	PF07690	Major Facilitator Superfamily
YPA_0472	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
YPA_0472	PF03466	LysR substrate binding domain
YPA_0473	PF00278	Pyridoxal-dependent decarboxylase, C-terminal sheet domain
YPA_0473	PF02784	Pyridoxal-dependent decarboxylase, pyridoxal binding domain
YPA_0474	PF00356	Bacterial regulatory proteins, lacI family
YPA_0474	PF13377	Periplasmic binding protein-like domain
YPA_0475	PF00384	Molybdopterin oxidoreductase
YPA_0475	PF01568	Molydopterin dinucleotide binding domain
YPA_0476	PF00501	AMP-binding enzyme
YPA_0476	PF01553	Acyltransferase
YPA_0476	PF13193	AMP-binding enzyme C-terminal domain
YPA_0477	PF07690	Major Facilitator Superfamily
YPA_0479	PF00248	Aldo/keto reductase family
YPA_0481	PF02976	DNA mismatch repair enzyme MutH
YPA_0482	PF00293	NUDIX domain
YPA_0483	PF00391	PEP-utilising enzyme, mobile domain
YPA_0483	PF01590	GAF domain
YPA_0483	PF02896	PEP-utilising enzyme, TIM barrel domain
YPA_0483	PF05524	PEP-utilising enzyme, N-terminal
YPA_0484	PF01790	YPA_0484
YPA_0485	PF00303	Thymidylate synthase
YPA_0486	PF07963	Prokaryotic N-terminal methylation motif
YPA_0488	PF10713	YPA_0488
YPA_0489	PF07963	Prokaryotic N-terminal methylation motif
YPA_0489	PF12528	YPA_0489
YPA_0490	PF04257	Exodeoxyribonuclease V, gamma subunit
YPA_0491	PF00675	Insulinase (Peptidase family M16)
YPA_0491	PF05193	Peptidase M16 inactive domain
YPA_0491	PF16187	YPA_0491
YPA_0492	PF00580	UvrD/REP helicase N-terminal domain
YPA_0492	PF13361	UvrD-like helicase C-terminal domain
YPA_0493	PF13538	UvrD-like helicase C-terminal domain
YPA_0493	PF13604	AAA domain
YPA_0494	PF00583	Acetyltransferase (GNAT) family
YPA_0494	PF00696	Amino acid kinase family
YPA_0495	PF01520	N-acetylmuramoyl-L-alanine amidase
YPA_0495	PF11741	AMIN domain
YPA_0496	PF03562	MltA specific insert domain
YPA_0496	PF06725	3D domain
YPA_0497	PF00899	ThiF family
YPA_0498	PF02657	Fe-S metabolism associated domain
YPA_0499	PF00266	Aminotransferase class-V
YPA_0500	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
YPA_0500	PF03466	LysR substrate binding domain
YPA_0501	PF04241	YPA_0501
YPA_0502	PF01728	FtsJ-like methyltransferase
YPA_0504	PF00665	Integrase core domain
YPA_0504	PF02796	Helix-turn-helix domain of resolvase
YPA_0505	PF01695	IstB-like ATP binding protein
YPA_0506	PF01367	5'-3' exonuclease, C-terminal SAM fold
YPA_0506	PF02739	5'-3' exonuclease, N-terminal resolvase-like domain
YPA_0507	PF03641	Possible lysine decarboxylase
YPA_0507	PF11892	Domain of unknown function (DUF3412)
YPA_0507	PF14793	Domain of unknown function (DUF4478)
YPA_0508	PF14489	QueF-like protein
YPA_0508	PF14819	Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term
YPA_0509	PF07348	Syd protein (SUKH-2)
YPA_0510	PF01797	Transposase IS200 like
YPA_0511	PF04287	tRNA pseudouridine synthase C
YPA_0512	PF00849	RNA pseudouridylate synthase
YPA_0513	PF00258	Flavodoxin
YPA_0514	PF11944	YPA_0514
YPA_0515	PF00132	Bacterial transferase hexapeptide (six repeats)
YPA_0515	PF14602	Hexapeptide repeat of succinyl-transferase
YPA_0515	PF14805	Tetrahydrodipicolinate N-succinyltransferase N-terminal
YPA_0516	PF01842	ACT domain
YPA_0516	PF01909	Nucleotidyltransferase domain
YPA_0516	PF01966	HD domain
YPA_0516	PF08335	GlnD PII-uridylyltransferase
YPA_0517	PF00557	Metallopeptidase family M24
YPA_0518	PF00318	Ribosomal protein S2
YPA_0520	PF00889	Elongation factor TS
YPA_0521	PF01797	Transposase IS200 like
YPA_0522	PF00696	Amino acid kinase family
YPA_0523	PF01765	Ribosome recycling factor
YPA_0524	PF02670	1-deoxy-D-xylulose 5-phosphate reductoisomerase
YPA_0524	PF08436	1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal
YPA_0524	PF13288	DXP reductoisomerase C-terminal domain
YPA_0525	PF01255	Putative undecaprenyl diphosphate synthase
YPA_0526	PF01148	Cytidylyltransferase family
YPA_0527	PF00595	PDZ domain (Also known as DHR or GLGF)
YPA_0527	PF02163	Peptidase family M50
YPA_0528	PF01103	Surface antigen
YPA_0528	PF07244	Surface antigen variable number repeat
YPA_0529	PF03938	Outer membrane protein (OmpH-like)
YPA_0530	PF00132	Bacterial transferase hexapeptide (six repeats)
YPA_0530	PF04613	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD
YPA_0531	PF07977	FabA-like domain
YPA_0532	PF00132	Bacterial transferase hexapeptide (six repeats)
YPA_0532	PF13720	Udp N-acetylglucosamine O-acyltransferase; Domain 2
YPA_0533	PF02684	YPA_0533
YPA_0534	PF01351	Ribonuclease HII
YPA_0535	PF01336	OB-fold nucleic acid binding domain
YPA_0535	PF02811	PHP domain
YPA_0535	PF07733	Bacterial DNA polymerase III alpha subunit
YPA_0535	PF14579	Helix-hairpin-helix motif
YPA_0536	PF03255	Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit
YPA_0537	PF00903	Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
YPA_0538	PF01171	PP-loop family
YPA_0538	PF09179	TilS substrate binding domain
YPA_0538	PF11734	TilS substrate C-terminal domain
YPA_0539	PF00034	Cytochrome c
YPA_0540	PF07073	Modulator of Rho-dependent transcription termination (ROF)
YPA_0541	PF06786	YPA_0541
YPA_0542	PF07152	YaeQ protein
YPA_0543	PF00472	RF-1 domain
YPA_0544	PF04170	NlpE N-terminal domain
YPA_0544	PF17185	YPA_0544
YPA_0545	PF00587	tRNA synthetase class II core domain (G, H, P, S and T)
YPA_0545	PF03129	Anticodon binding domain
YPA_0545	PF04073	Aminoacyl-tRNA editing domain
YPA_0546	PF01980	Uncharacterised protein family UPF0066
YPA_0547	PF16358	YPA_0547
YPA_0548	PF03180	NLPA lipoprotein
YPA_0549	PF00528	Binding-protein-dependent transport system inner membrane component
YPA_0550	PF00005	ABC transporter
YPA_0550	PF09383	NIL domain
YPA_0551	PF13242	HAD-hyrolase-like
YPA_0553	PF00248	Aldo/keto reductase family
YPA_0555	PF03372	Endonuclease/Exonuclease/phosphatase family
YPA_0556	PF01464	Transglycosylase SLT domain
YPA_0556	PF01476	LysM domain
YPA_0557	PF00753	Metallo-beta-lactamase superfamily
YPA_0557	PF16123	YPA_0557
YPA_0558	PF08241	Methyltransferase domain
YPA_0559	PF00075	RNase H
YPA_0560	PF00929	Exonuclease
YPA_0561	PF02133	Permease for cytosine/purines, uracil, thiamine, allantoin
YPA_0563	PF01695	IstB-like ATP binding protein
YPA_0564	PF00665	Integrase core domain
YPA_0564	PF02796	Helix-turn-helix domain of resolvase
YPA_0566	PF05973	YPA_0566
YPA_0568	PF13481	AAA domain
YPA_0569	PF08273	Zinc-binding domain of primase-helicase
YPA_0569	PF13362	Toprim domain
YPA_0570	PF10554	YPA_0570
YPA_0571	PF05930	Prophage CP4-57 regulatory protein (AlpA)
YPA_0572	PF12834	YPA_0572
YPA_0572	PF12835	Integrase
YPA_0576	PF14130	YPA_0576
YPA_0577	PF00589	Phage integrase family
YPA_0577	PF13356	Domain of unknown function (DUF4102)
YPA_0578	PF01797	Transposase IS200 like
YPA_0579	PF01668	SmpB protein
YPA_0580	PF03364	Polyketide cyclase / dehydrase and lipid transport
YPA_0581	PF03658	RnfH family Ubiquitin
YPA_0582	PF04355	SmpA / OmlA family
YPA_0583	PF02463	RecF/RecN/SMC N terminal domain
YPA_0584	PF01513	ATP-NAD kinase
YPA_0585	PF01025	GrpE
YPA_0586	PF00285	Citrate synthase
YPA_0587	PF01127	Succinate dehydrogenase/Fumarate reductase transmembrane subunit
YPA_0589	PF00890	FAD binding domain
YPA_0589	PF02910	Fumarate reductase flavoprotein C-term
YPA_0590	PF13085	2Fe-2S iron-sulfur cluster binding domain
YPA_0590	PF13534	4Fe-4S dicluster domain
YPA_0591	PF00676	Dehydrogenase E1 component
YPA_0591	PF02779	Transketolase, pyrimidine binding domain
YPA_0591	PF16078	YPA_0591
YPA_0591	PF16870	YPA_0591
YPA_0592	PF00198	2-oxoacid dehydrogenases acyltransferase (catalytic domain)
YPA_0592	PF00364	Biotin-requiring enzyme
YPA_0592	PF02817	e3 binding domain
YPA_0593	PF00549	CoA-ligase
YPA_0593	PF08442	ATP-grasp domain
YPA_0594	PF00549	CoA-ligase
YPA_0594	PF02629	CoA binding domain
YPA_0595	PF01654	YPA_0595
YPA_0596	PF02322	YPA_0596
YPA_0597	PF09600	YPA_0597
YPA_0598	PF03061	Thioesterase superfamily
YPA_0599	PF01618	YPA_0599
YPA_0600	PF02472	Biopolymer transport protein ExbD/TolR
YPA_0601	PF06519	TolA C-terminal
YPA_0602	PF04052	TolB amino-terminal domain
YPA_0602	PF07676	WD40-like Beta Propeller Repeat
YPA_0603	PF00691	OmpA family
YPA_0604	PF13174	Tetratricopeptide repeat
YPA_0604	PF13432	Tetratricopeptide repeat
YPA_0604	PF16331	YPA_0604
YPA_0605	PF02445	Quinolinate synthetase A protein
YPA_0606	PF04973	YPA_0606
YPA_0607	PF01545	Cation efflux family
YPA_0608	PF00793	DAHP synthetase I family
YPA_0609	PF01695	IstB-like ATP binding protein
YPA_0610	PF00665	Integrase core domain
YPA_0610	PF02796	Helix-turn-helix domain of resolvase
YPA_0611	PF00768	D-alanyl-D-alanine carboxypeptidase
YPA_0611	PF07943	Penicillin-binding protein 5, C-terminal domain
YPA_0612	PF03222	Tryptophan/tyrosine permease family
YPA_0613	PF00455	YPA_0613
YPA_0613	PF08220	DeoR-like helix-turn-helix domain
YPA_0614	PF01791	DeoC/LacD family aldolase
YPA_0615	PF01569	PAP2 superfamily
YPA_0616	PF01569	PAP2 superfamily
YPA_0617	PF02080	TrkA-C domain
YPA_0617	PF06826	YPA_0617
YPA_0618	PF00462	Glutaredoxin
YPA_0619	PF07214	YPA_0619
YPA_0620	PF10722	Putative bacterial sensory transduction regulator
YPA_0621	PF13416	Bacterial extracellular solute-binding protein
YPA_0622	PF00005	ABC transporter
YPA_0622	PF08402	TOBE domain
YPA_0623	PF00528	Binding-protein-dependent transport system inner membrane component
YPA_0624	PF00528	Binding-protein-dependent transport system inner membrane component
YPA_0625	PF10767	YPA_0625
YPA_0626	PF05958	tRNA (Uracil-5-)-methyltransferase
YPA_0627	PF00497	Bacterial extracellular solute-binding proteins, family 3
YPA_0628	PF01145	SPFH domain / Band 7 family
YPA_0629	PF01497	Periplasmic binding protein
YPA_0630	PF01032	FecCD transport family
YPA_0631	PF00005	ABC transporter
YPA_0632	PF03059	Nicotianamine synthase protein
YPA_0633	PF10100	YPA_0633
YPA_0634	PF00892	EamA-like transporter family
YPA_0636	PF00528	Binding-protein-dependent transport system inner membrane component
YPA_0637	PF00528	Binding-protein-dependent transport system inner membrane component
YPA_0638	PF00497	Bacterial extracellular solute-binding proteins, family 3
YPA_0639	PF00005	ABC transporter
YPA_0640	PF01817	Chorismate mutase type II
YPA_0642	PF12883	Protein of unknown function (DUF3828)
YPA_0643	PF01370	NAD dependent epimerase/dehydratase family
YPA_0644	PF11066	YPA_0644
YPA_0644	PF13460	NADH(P)-binding
YPA_0645	PF01212	Beta-eliminating lyase
YPA_0647	PF00205	Thiamine pyrophosphate enzyme, central domain
YPA_0647	PF02775	Thiamine pyrophosphate enzyme, C-terminal TPP binding domain
YPA_0647	PF02776	Thiamine pyrophosphate enzyme, N-terminal TPP binding domain
YPA_0648	PF00111	2Fe-2S iron-sulfur cluster binding domain
YPA_0648	PF00175	Oxidoreductase NAD-binding domain
YPA_0648	PF00970	Oxidoreductase FAD-binding domain
YPA_0649	PF03063	Prismane/CO dehydrogenase family
YPA_0650	PF03956	YPA_0650
YPA_0651	PF11398	Protein of unknown function (DUF2813)
YPA_0652	PF04393	YPA_0652
YPA_0654	PF16576	YPA_0654
YPA_0655	PF00005	ABC transporter
YPA_0655	PF02687	YPA_0655
YPA_0655	PF12704	MacB-like periplasmic core domain
YPA_0656	PF00313	'Cold-shock' DNA-binding domain
YPA_0657	PF02617	ATP-dependent Clp protease adaptor protein ClpS
YPA_0658	PF00004	ATPase family associated with various cellular activities (AAA)
YPA_0658	PF02861	Clp amino terminal domain
YPA_0658	PF07724	AAA domain (Cdc48 subfamily)
YPA_0658	PF10431	C-terminal, D2-small domain, of ClpB protein
YPA_0659	PF01797	Transposase IS200 like
YPA_0660	PF01176	Translation initiation factor 1A / IF-1
YPA_0661	PF03588	Leucyl/phenylalanyl-tRNA protein transferase
YPA_0662	PF00005	ABC transporter
YPA_0662	PF00664	ABC transporter transmembrane region
YPA_0663	PF00005	ABC transporter
YPA_0663	PF00664	ABC transporter transmembrane region
YPA_0664	PF07992	Pyridine nucleotide-disulphide oxidoreductase
YPA_0665	PF01037	AsnC family
YPA_0665	PF13412	Winged helix-turn-helix DNA-binding
YPA_0666	PF01580	FtsK/SpoIIIE family
YPA_0666	PF09397	Ftsk gamma domain
YPA_0666	PF13491	YPA_0666
YPA_0667	PF03548	Outer membrane lipoprotein carrier protein LolA
YPA_0668	PF00004	ATPase family associated with various cellular activities (AAA)
YPA_0668	PF12002	MgsA AAA+ ATPase C terminal
YPA_0668	PF16193	YPA_0668
YPA_0669	PF00587	tRNA synthetase class II core domain (G, H, P, S and T)
YPA_0669	PF02403	Seryl-tRNA synthetase N-terminal domain
YPA_0670	PF07690	Major Facilitator Superfamily
YPA_0671	PF07690	Major Facilitator Superfamily
YPA_0672	PF04055	Radical SAM superfamily
YPA_0672	PF13353	4Fe-4S single cluster domain
YPA_0673	PF01755	YPA_0673
YPA_0674	PF01228	Glycine radical
YPA_0674	PF02901	Pyruvate formate lyase
YPA_0675	PF01226	Formate/nitrite transporter
YPA_0676	PF02624	YcaO-like family
YPA_0677	PF00710	Asparaginase
YPA_0678	PF03895	YadA-like C-terminal region
YPA_0679	PF03895	YadA-like C-terminal region
YPA_0680	PF00266	Aminotransferase class-V
YPA_0681	PF00275	EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)
YPA_0682	PF02224	Cytidylate kinase
YPA_0683	PF00575	S1 RNA binding domain
YPA_0684	PF00216	Bacterial DNA-binding protein
YPA_0685	PF00753	Metallo-beta-lactamase superfamily
YPA_0685	PF03772	YPA_0685
YPA_0685	PF13567	YPA_0685
YPA_0686	PF00005	ABC transporter
YPA_0686	PF00664	ABC transporter transmembrane region
YPA_0687	PF02606	Tetraacyldisaccharide-1-P 4'-kinase
YPA_0688	PF07063	Domain of unknown function (DUF1338)
YPA_0689	PF01695	IstB-like ATP binding protein
YPA_0690	PF00665	Integrase core domain
YPA_0690	PF02796	Helix-turn-helix domain of resolvase
YPA_0691	PF07063	Domain of unknown function (DUF1338)
YPA_0692	PF00313	'Cold-shock' DNA-binding domain
YPA_0693	PF03966	Trm112p-like protein
YPA_0694	PF02348	Cytidylyltransferase
YPA_0695	PF03881	Fructosamine kinase
YPA_0696	PF13847	Methyltransferase domain
YPA_0697	PF03882	KicB killing factor
YPA_0697	PF17192	YPA_0697
YPA_0697	PF17193	YPA_0697
YPA_0698	PF04288	MukE-like family
YPA_0699	PF04310	MukB N-terminal
YPA_0699	PF13558	Putative exonuclease SbcCD, C subunit
YPA_0699	PF16330	YPA_0699
YPA_0700	PF01797	Transposase IS200 like
YPA_0701	PF01471	Putative peptidoglycan binding domain
YPA_0701	PF03734	L,D-transpeptidase catalytic domain
YPA_0702	PF05951	YPA_0702
YPA_0703	PF00753	Metallo-beta-lactamase superfamily
YPA_0704	PF00155	Aminotransferase class I and II
YPA_0705	PF00267	Gram-negative porin
YPA_0706	PF00267	Gram-negative porin
YPA_0707	PF00152	tRNA synthetases class II (D, K and N)
YPA_0707	PF01336	OB-fold nucleic acid binding domain
YPA_0708	PF04095	Nicotinate phosphoribosyltransferase (NAPRTase) family
YPA_0709	PF01433	Peptidase family M1
YPA_0709	PF11940	Domain of unknown function (DUF3458)
YPA_0709	PF17432	YPA_0709
YPA_0710	PF01180	Dihydroorotate dehydrogenase
YPA_0711	PF07126	YPA_0711
YPA_0712	PF00111	2Fe-2S iron-sulfur cluster binding domain
YPA_0712	PF03473	MOSC domain
YPA_0712	PF03476	MOSC N-terminal beta barrel domain
YPA_0713	PF01170	Putative RNA methylase family UPF0020
YPA_0713	PF02926	THUMP domain
YPA_0713	PF10672	S-adenosylmethionine-dependent methyltransferase
YPA_0714	PF00005	ABC transporter
YPA_0714	PF12848	ABC transporter
YPA_0714	PF16326	YPA_0714
YPA_0715	PF04403	YPA_0715
YPA_0716	PF02470	YPA_0716
YPA_0717	PF03886	Protein of unknown function (DUF330)
YPA_0718	PF01797	Transposase IS200 like
YPA_0719	PF00109	Beta-ketoacyl synthase, N-terminal domain
YPA_0719	PF02801	Beta-ketoacyl synthase, C-terminal domain
YPA_0720	PF01695	IstB-like ATP binding protein
YPA_0721	PF00665	Integrase core domain
YPA_0721	PF02796	Helix-turn-helix domain of resolvase
YPA_0722	PF00109	Beta-ketoacyl synthase, N-terminal domain
YPA_0723	PF07977	FabA-like domain
YPA_0724	PF05362	Lon protease (S16) C-terminal proteolytic domain
YPA_0724	PF13654	AAA domain
YPA_0725	PF06303	Organiser of macrodomain of Terminus of chromosome
YPA_0725	PF17414	YPA_0725
YPA_0726	PF01797	Transposase IS200 like
YPA_0727	PF00691	OmpA family
YPA_0727	PF01389	OmpA-like transmembrane domain
YPA_0728	PF03846	Cell division inhibitor SulA
YPA_0729	PF04993	TfoX N-terminal domain
YPA_0729	PF04994	TfoX C-terminal domain
YPA_0730	PF12805	YPA_0730
YPA_0730	PF13515	YPA_0730
YPA_0731	PF03733	YPA_0731
YPA_0732	PF00580	UvrD/REP helicase N-terminal domain
YPA_0732	PF12462	YPA_0732
YPA_0732	PF13361	UvrD-like helicase C-terminal domain
YPA_0733	PF02142	MGS-like domain
YPA_0734	PF09829	YPA_0734
YPA_0735	PF13380	CoA binding domain
YPA_0736	PF08755	Hemimethylated DNA-binding protein YccV like
YPA_0737	PF10672	S-adenosylmethionine-dependent methyltransferase
YPA_0738	PF00708	Acylphosphatase
YPA_0739	PF04358	DsrC like protein
YPA_0740	PF13610	YPA_0740
YPA_0744	PF01565	FAD binding domain
YPA_0744	PF13480	Acetyltransferase (GNAT) domain
YPA_0745	PF13561	Enoyl-(Acyl carrier protein) reductase
YPA_0747	PF07977	FabA-like domain
YPA_0748	PF00109	Beta-ketoacyl synthase, N-terminal domain
YPA_0748	PF02801	Beta-ketoacyl synthase, C-terminal domain
YPA_0749	PF13561	Enoyl-(Acyl carrier protein) reductase
YPA_0750	PF01154	Hydroxymethylglutaryl-coenzyme A synthase N terminal
YPA_0750	PF08540	Hydroxymethylglutaryl-coenzyme A synthase C terminal
YPA_0751	PF00378	Enoyl-CoA hydratase/isomerase family
YPA_0752	PF00378	Enoyl-CoA hydratase/isomerase family
YPA_0753	PF13561	Enoyl-(Acyl carrier protein) reductase
YPA_0754	PF13924	YPA_0754
YPA_0755	PF00550	Phosphopantetheine attachment site
YPA_0756	PF00698	Acyl transferase domain
YPA_0757	PF00665	Integrase core domain
YPA_0757	PF02796	Helix-turn-helix domain of resolvase
YPA_0758	PF01695	IstB-like ATP binding protein
YPA_0759	PF05591	YPA_0759
YPA_0760	PF05943	YPA_0760
YPA_0761	PF05936	YPA_0761
YPA_0762	PF09850	Uncharacterized protein conserved in bacteria (DUF2077)
YPA_0763	PF00691	OmpA family
YPA_0764	PF05638	Protein of unknown function (DUF796)
YPA_0765	PF00004	ATPase family associated with various cellular activities (AAA)
YPA_0765	PF07724	AAA domain (Cdc48 subfamily)
YPA_0765	PF10431	C-terminal, D2-small domain, of ClpB protein
YPA_0766	PF05954	Phage late control gene D protein (GPD)
YPA_0766	PF10106	YPA_0766
YPA_0766	PF13296	YPA_0766
YPA_0767	PF01551	Peptidase family M23
YPA_0769	PF10106	YPA_0769
YPA_0770	PF01551	Peptidase family M23
YPA_0776	PF06744	YPA_0776
YPA_0776	PF06761	YPA_0776
YPA_0777	PF06812	YPA_0777
YPA_0777	PF16989	YPA_0777
YPA_0778	PF16989	YPA_0778
YPA_0779	PF05488	PAAR motif
YPA_0779	PF15607	YPA_0779
YPA_0781	PF05947	YPA_0781
YPA_0782	PF06996	YPA_0782
YPA_0783	PF12790	Type VI secretion lipoprotein
YPA_0784	PF04965	Gene 25-like lysozyme
YPA_0785	PF06812	YPA_0785
YPA_0785	PF12486	YPA_0785
YPA_0786	PF16809	YPA_0786
YPA_0787	PF00005	ABC transporter
YPA_0787	PF12848	ABC transporter
YPA_0788	PF16809	YPA_0788
YPA_0789	PF00872	YPA_0789
YPA_0790	PF00899	ThiF family
YPA_0791	PF00994	Probable molybdopterin binding domain
YPA_0791	PF03453	MoeA N-terminal region (domain I and II)
YPA_0791	PF03454	MoeA C-terminal region (domain IV)
YPA_0792	PF04055	Radical SAM superfamily
YPA_0793	PF00005	ABC transporter
YPA_0794	PF13437	HlyD family secretion protein
YPA_0796	PF00756	Putative esterase
YPA_0797	PF00107	Zinc-binding dehydrogenase
YPA_0797	PF08240	Alcohol dehydrogenase GroES-like domain
YPA_0798	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
YPA_0798	PF03466	LysR substrate binding domain
YPA_0799	PF06779	YPA_0799
YPA_0800	PF01227	GTP cyclohydrolase I
YPA_0801	PF04235	YPA_0801
YPA_0802	PF13407	Periplasmic binding protein domain
YPA_0803	PF00005	ABC transporter
YPA_0804	PF02653	YPA_0804
YPA_0805	PF02698	DUF218 domain
YPA_0806	PF00390	Malic enzyme, N-terminal domain
YPA_0806	PF03949	Malic enzyme, NAD binding domain
YPA_0807	PF00383	Cytidine and deoxycytidylate deaminase zinc-binding region
YPA_0807	PF08211	Cytidine and deoxycytidylate deaminase zinc-binding region
YPA_0808	PF04172	YPA_0808
YPA_0809	PF03788	YPA_0809
YPA_0810	PF07690	Major Facilitator Superfamily
YPA_0811	PF08309	YPA_0811
YPA_0812	PF13407	Periplasmic binding protein domain
YPA_0815	PF01797	Transposase IS200 like
YPA_0816	PF01588	Putative tRNA binding domain
YPA_0816	PF09334	tRNA synthetases class I (M)
YPA_0817	PF10609	ParA/MinD ATPase like
YPA_0818	PF00485	Phosphoribulokinase / Uridine kinase family
YPA_0819	PF00692	dUTPase
YPA_0820	PF05170	YPA_0820
YPA_0820	PF13502	YPA_0820
YPA_0821	PF00571	CBS domain
YPA_0821	PF03471	Transporter associated domain
YPA_0821	PF03741	YPA_0821
YPA_0822	PF06276	Ferric iron reductase FhuF-like transporter
YPA_0822	PF11575	YPA_0822
YPA_0823	PF00282	Pyridoxal-dependent decarboxylase conserved domain
YPA_0824	PF13434	L-lysine 6-monooxygenase (NADPH-requiring)
YPA_0825	PF13523	Acetyltransferase (GNAT) domain
YPA_0826	PF04183	IucA / IucC family
YPA_0826	PF06276	Ferric iron reductase FhuF-like transporter
YPA_0827	PF00005	ABC transporter
YPA_0828	PF01032	FecCD transport family
YPA_0829	PF01032	FecCD transport family
YPA_0830	PF01497	Periplasmic binding protein
YPA_0831	PF00593	TonB dependent receptor
YPA_0831	PF07715	TonB-dependent Receptor Plug Domain
YPA_0832	PF04183	IucA / IucC family
YPA_0832	PF06276	Ferric iron reductase FhuF-like transporter
YPA_0833	PF04183	IucA / IucC family
YPA_0834	PF00483	Nucleotidyl transferase
YPA_0835	PF00483	Nucleotidyl transferase
YPA_0836	PF00393	6-phosphogluconate dehydrogenase, C-terminal domain
YPA_0836	PF03446	NAD binding domain of 6-phosphogluconate dehydrogenase
YPA_0837	PF01502	Phosphoribosyl-AMP cyclohydrolase
YPA_0837	PF01503	Phosphoribosyl-ATP pyrophosphohydrolase
YPA_0838	PF00977	Histidine biosynthesis protein
YPA_0839	PF00977	Histidine biosynthesis protein
YPA_0840	PF00117	Glutamine amidotransferase class-I
YPA_0842	PF00475	Imidazoleglycerol-phosphate dehydratase
YPA_0842	PF13242	HAD-hyrolase-like
YPA_0843	PF00155	Aminotransferase class I and II
YPA_0844	PF00815	Histidinol dehydrogenase
YPA_0845	PF01634	ATP phosphoribosyltransferase
YPA_0845	PF08029	HisG, C-terminal domain
YPA_0846	PF01370	NAD dependent epimerase/dehydratase family
YPA_0847	PF16695	YPA_0847
YPA_0848	PF02653	YPA_0848
YPA_0849	PF00005	ABC transporter
YPA_0850	PF00005	ABC transporter
YPA_0851	PF00465	Iron-containing alcohol dehydrogenase
YPA_0852	PF13520	Amino acid permease
YPA_0853	PF00929	Exonuclease
YPA_0853	PF08411	Exonuclease C-terminal
YPA_0854	PF07993	Male sterility protein
YPA_0855	PF04363	YPA_0855
YPA_0856	PF00872	YPA_0856
YPA_0857	PF02369	Bacterial Ig-like domain (group 1)
YPA_0857	PF09134	Invasin, domain 3
YPA_0857	PF11924	Protein of unknown function (DUF3442)
YPA_0859	PF07690	Major Facilitator Superfamily
YPA_0860	PF04134	YPA_0860
YPA_0861	PF13561	Enoyl-(Acyl carrier protein) reductase
YPA_0862	PF01557	Fumarylacetoacetate (FAA) hydrolase family
YPA_0863	PF02746	Mandelate racemase / muconate lactonizing enzyme, N-terminal domain
YPA_0863	PF13378	Enolase C-terminal domain-like
YPA_0864	PF01070	FMN-dependent dehydrogenase
YPA_0865	PF00764	Arginosuccinate synthase
YPA_0866	PF00764	Arginosuccinate synthase
YPA_0867	PF01554	MatE
YPA_0868	PF07690	Major Facilitator Superfamily
YPA_0869	PF01522	Polysaccharide deacetylase
YPA_0871	PF09831	YPA_0871
YPA_0872	PF00072	Response regulator receiver domain
YPA_0872	PF00196	Bacterial regulatory proteins, luxR family
YPA_0873	PF06808	YPA_0873
YPA_0874	PF04290	YPA_0874
YPA_0875	PF03480	Bacterial extracellular solute-binding protein, family 7
YPA_0876	PF01648	4'-phosphopantetheinyl transferase superfamily
YPA_0878	PF02065	Melibiase
YPA_0878	PF16875	YPA_0878
YPA_0879	PF01306	LacY proton/sugar symporter
YPA_0880	PF00872	YPA_0880
YPA_0881	PF01548	YPA_0881
YPA_0882	PF00270	DEAD/DEAH box helicase
YPA_0882	PF00271	Helicase conserved C-terminal domain
YPA_0883	PF01797	Transposase IS200 like
YPA_0885	PF01207	Dihydrouridine synthase (Dus)
YPA_0887	PF00768	D-alanyl-D-alanine carboxypeptidase
YPA_0888	PF01565	FAD binding domain
YPA_0888	PF09330	D-lactate dehydrogenase, membrane binding
YPA_0889	PF01928	CYTH domain
YPA_0890	PF01844	HNH endonuclease
YPA_0892	PF05076	Suppressor of fused protein (SUFU)
YPA_0893	PF04226	YPA_0893
YPA_0894	PF00005	ABC transporter
YPA_0895	PF12974	ABC transporter, phosphonate, periplasmic substrate-binding protein
YPA_0896	PF00528	Binding-protein-dependent transport system inner membrane component
YPA_0897	PF00528	Binding-protein-dependent transport system inner membrane component
YPA_0898	PF07308	YPA_0898
YPA_0899	PF13433	Periplasmic binding protein domain
YPA_0900	PF02653	YPA_0900
YPA_0900	PF13646	HEAT repeats
YPA_0901	PF02653	YPA_0901
YPA_0902	PF00005	ABC transporter
YPA_0902	PF12399	Branched-chain amino acid ATP-binding cassette transporter
YPA_0903	PF00005	ABC transporter
YPA_0904	PF13640	2OG-Fe(II) oxygenase superfamily
YPA_0905	PF00282	Pyridoxal-dependent decarboxylase conserved domain
YPA_0906	PF00581	Rhodanese-like domain
YPA_0907	PF04069	Substrate binding domain of ABC-type glycine betaine transport system
YPA_0908	PF04069	Substrate binding domain of ABC-type glycine betaine transport system
YPA_0909	PF00528	Binding-protein-dependent transport system inner membrane component
YPA_0910	PF00005	ABC transporter
YPA_0911	PF00528	Binding-protein-dependent transport system inner membrane component
YPA_0912	PF13520	Amino acid permease
YPA_0913	PF01276	Orn/Lys/Arg decarboxylase, major domain
YPA_0913	PF03709	Orn/Lys/Arg decarboxylase, N-terminal domain
YPA_0913	PF03711	Orn/Lys/Arg decarboxylase, C-terminal domain
YPA_0915	PF00892	EamA-like transporter family
YPA_0917	PF00665	Integrase core domain
YPA_0917	PF02796	Helix-turn-helix domain of resolvase
YPA_0918	PF01695	IstB-like ATP binding protein
YPA_0919	PF00267	Gram-negative porin
YPA_0920	PF06733	DEAD_2
YPA_0920	PF13307	Helicase C-terminal domain
YPA_0921	PF00199	Catalase
YPA_0921	PF06628	Catalase-related immune-responsive
YPA_0922	PF07437	YPA_0922
YPA_0923	PF03222	Tryptophan/tyrosine permease family
YPA_0924	PF00994	Probable molybdopterin binding domain
YPA_0925	PF03974	Ecotin
YPA_0926	PF00111	2Fe-2S iron-sulfur cluster binding domain
YPA_0927	PF00268	Ribonucleotide reductase, small chain
YPA_0928	PF00317	Ribonucleotide reductase, all-alpha domain
YPA_0928	PF02867	Ribonucleotide reductase, barrel domain
YPA_0928	PF03477	ATP cone domain
YPA_0929	PF13489	Methyltransferase domain
YPA_0930	PF00521	DNA gyrase/topoisomerase IV, subunit A
YPA_0930	PF03989	DNA gyrase C-terminal domain, beta-propeller
YPA_0931	PF00072	Response regulator receiver domain
YPA_0931	PF00512	His Kinase A (phospho-acceptor) domain
YPA_0931	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
YPA_0931	PF09456	RcsC Alpha-Beta-Loop (ABL)
YPA_0932	PF00072	Response regulator receiver domain
YPA_0932	PF00196	Bacterial regulatory proteins, luxR family
YPA_0933	PF01627	Hpt domain
YPA_0933	PF16359	YPA_0933
YPA_0934	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
YPA_0935	PF07690	Major Facilitator Superfamily
YPA_0936	PF00267	Gram-negative porin
YPA_0937	PF01797	Transposase IS200 like
YPA_0938	PF01797	Transposase IS200 like
YPA_0939	PF00144	Beta-lactamase
YPA_0941	PF13347	MFS/sugar transport protein
YPA_0942	PF12706	Beta-lactamase superfamily domain
YPA_0943	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
YPA_0943	PF00672	HAMP domain
YPA_0943	PF02743	Cache domain
YPA_0944	PF01278	Omptin family
YPA_0945	PF06183	DinI-like family
YPA_0947	PF00717	Peptidase S24-like
YPA_0947	PF01381	Helix-turn-helix
YPA_0948	PF06530	YPA_0948
YPA_0949	PF07005	Protein of unknown function, DUF1537
YPA_0949	PF17042	YPA_0949
YPA_0950	PF00596	Class II Aldolase and Adducin N-terminal domain
YPA_0951	PF00455	YPA_0951
YPA_0951	PF08220	DeoR-like helix-turn-helix domain
YPA_0952	PF01261	Xylose isomerase-like TIM barrel
YPA_0955	PF10948	YPA_0955
YPA_0956	PF04984	Phage tail sheath protein
YPA_0956	PF17482	YPA_0956
YPA_0957	PF10618	YPA_0957
YPA_0958	PF10109	YPA_0958
YPA_0960	PF07157	YPA_0960
YPA_0961	PF05954	Phage late control gene D protein (GPD)
YPA_0962	PF06890	Bacteriophage Mu Gp45 protein
YPA_0963	PF07409	YPA_0963
YPA_0964	PF04865	YPA_0964
YPA_0965	PF10076	YPA_0965
YPA_0966	PF10076	YPA_0966
YPA_0967	PF07484	Phage Tail Collar Domain
YPA_0968	PF01380	SIS domain
YPA_0968	PF01418	Helix-turn-helix domain, rpiR family
YPA_0969	PF00232	Glycosyl hydrolase family 1
YPA_0973	PF12639	DNase/tRNase domain of colicin-like bacteriocin
YPA_0974	PF00665	Integrase core domain
YPA_0974	PF02796	Helix-turn-helix domain of resolvase
YPA_0975	PF01695	IstB-like ATP binding protein
YPA_0978	PF00884	Sulfatase
YPA_0978	PF11893	YPA_0978
YPA_0979	PF07208	Protein of unknown function (DUF1414)
YPA_0980	PF04245	YPA_0980
YPA_0981	PF01797	Transposase IS200 like
YPA_0982	PF01386	Ribosomal L25p family
YPA_0983	PF00271	Helicase conserved C-terminal domain
YPA_0983	PF04851	Type III restriction enzyme, res subunit
YPA_0984	PF00849	RNA pseudouridylate synthase
YPA_0984	PF01479	S4 domain
YPA_0985	PF07690	Major Facilitator Superfamily
YPA_0987	PF13989	YPA_0987
YPA_0988	PF00005	ABC transporter
YPA_0988	PF08352	Oligopeptide/dipeptide transporter, C-terminal region
YPA_0989	PF00528	Binding-protein-dependent transport system inner membrane component
YPA_0989	PF12911	YPA_0989
YPA_0990	PF00528	Binding-protein-dependent transport system inner membrane component
YPA_0991	PF00496	Bacterial extracellular solute-binding proteins, family 5 Middle
YPA_0992	PF00563	EAL domain
YPA_0992	PF12792	YPA_0992
YPA_0993	PF00877	NlpC/P60 family
YPA_0994	PF01569	PAP2 superfamily
YPA_0995	PF02492	CobW/HypB/UreG, nucleotide-binding domain
YPA_0995	PF07683	Cobalamin synthesis protein cobW C-terminal domain
YPA_0997	PF00392	Bacterial regulatory proteins, gntR family
YPA_0997	PF07729	FCD domain
YPA_0998	PF01232	Mannitol dehydrogenase Rossmann domain
YPA_0998	PF08125	Mannitol dehydrogenase C-terminal domain
YPA_0999	PF03786	D-mannonate dehydratase (UxuA)
YPA_1000	PF01132	Elongation factor P (EF-P) OB domain
YPA_1000	PF08207	Elongation factor P (EF-P) KOW-like domain
YPA_1000	PF09285	Elongation factor P, C-terminal
YPA_1001	PF03222	Tryptophan/tyrosine permease family
YPA_1002	PF03692	YPA_1002
YPA_1003	PF13561	Enoyl-(Acyl carrier protein) reductase
YPA_1004	PF00389	D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
YPA_1004	PF02826	D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
YPA_1005	PF01557	Fumarylacetoacetate (FAA) hydrolase family
YPA_1006	PF00665	Integrase core domain
YPA_1006	PF13276	YPA_1006
YPA_1007	PF13518	Helix-turn-helix domain
YPA_1008	PF00171	Aldehyde dehydrogenase family
YPA_1009	PF00370	FGGY family of carbohydrate kinases, N-terminal domain
YPA_1009	PF02782	FGGY family of carbohydrate kinases, C-terminal domain
YPA_1010	PF06026	Ribose 5-phosphate isomerase A (phosphoriboisomerase A)
YPA_1011	PF13407	Periplasmic binding protein domain
YPA_1012	PF00005	ABC transporter
YPA_1013	PF02653	YPA_1013
YPA_1014	PF00293	NUDIX domain
YPA_1015	PF00359	Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2
YPA_1015	PF00381	PTS HPr component phosphorylation site
YPA_1016	PF00294	pfkB family carbohydrate kinase
YPA_1017	PF02302	PTS system, Lactose/Cellobiose specific IIB subunit
YPA_1017	PF02378	Phosphotransferase system, EIIC
YPA_1018	PF00486	Transcriptional regulatory protein, C terminal
YPA_1019	PF17550	YPA_1019
YPA_1021	PF00345	Pili and flagellar-assembly chaperone, PapD N-terminal domain
YPA_1021	PF02753	Pili assembly chaperone PapD, C-terminal domain
YPA_1022	PF00577	Outer membrane usher protein
YPA_1022	PF13953	PapC C-terminal domain
YPA_1022	PF13954	PapC N-terminal domain
YPA_1023	PF01261	Xylose isomerase-like TIM barrel
YPA_1024	PF03601	YPA_1024
YPA_1025	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
YPA_1025	PF03466	LysR substrate binding domain
YPA_1026	PF00324	Amino acid permease
YPA_1027	PF01497	Periplasmic binding protein
YPA_1028	PF01032	FecCD transport family
YPA_1029	PF00005	ABC transporter
YPA_1030	PF00593	TonB dependent receptor
YPA_1030	PF07715	TonB-dependent Receptor Plug Domain
YPA_1031	PF00043	Glutathione S-transferase, C-terminal domain
YPA_1031	PF13417	Glutathione S-transferase, N-terminal domain
YPA_1032	PF12710	haloacid dehalogenase-like hydrolase
YPA_1033	PF03171	2OG-Fe(II) oxygenase superfamily
YPA_1033	PF14226	non-haem dioxygenase in morphine synthesis N-terminal
YPA_1034	PF03180	NLPA lipoprotein
YPA_1035	PF00005	ABC transporter
YPA_1035	PF09383	NIL domain
YPA_1036	PF00528	Binding-protein-dependent transport system inner membrane component
YPA_1037	PF00768	D-alanyl-D-alanine carboxypeptidase
YPA_1038	PF01695	IstB-like ATP binding protein
YPA_1039	PF00665	Integrase core domain
YPA_1039	PF02796	Helix-turn-helix domain of resolvase
YPA_1041	PF00300	Histidine phosphatase superfamily (branch 1)
YPA_1042	PF07769	YPA_1042
YPA_1043	PF01263	Aldose 1-epimerase
YPA_1045	PF00288	GHMP kinases N terminal domain
YPA_1045	PF08544	GHMP kinases C terminal
YPA_1045	PF10509	Galactokinase galactose-binding signature
YPA_1046	PF01087	Galactose-1-phosphate uridyl transferase, N-terminal domain
YPA_1046	PF02744	Galactose-1-phosphate uridyl transferase, C-terminal domain
YPA_1047	PF16363	YPA_1047
YPA_1048	PF02517	CAAX protease self-immunity
YPA_1049	PF00005	ABC transporter
YPA_1050	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
YPA_1050	PF03459	TOBE domain
YPA_1051	PF10766	Protein of unknown function (DUF2592)
YPA_1052	PF13531	Bacterial extracellular solute-binding protein
YPA_1053	PF00528	Binding-protein-dependent transport system inner membrane component
YPA_1054	PF00005	ABC transporter
YPA_1054	PF03459	TOBE domain
YPA_1055	PF08282	haloacid dehalogenase-like hydrolase
YPA_1056	PF10282	Lactonase, 7-bladed beta-propeller
YPA_1057	PF00202	Aminotransferase class-III
YPA_1058	PF04055	Radical SAM superfamily
YPA_1058	PF06968	Biotin and Thiamin Synthesis associated domain
YPA_1059	PF00155	Aminotransferase class I and II
YPA_1060	PF08241	Methyltransferase domain
YPA_1061	PF13500	AAA domain
YPA_1062	PF00005	ABC transporter
YPA_1063	PF00271	Helicase conserved C-terminal domain
YPA_1063	PF02151	UvrB/uvrC motif
YPA_1063	PF04851	Type III restriction enzyme, res subunit
YPA_1063	PF12344	Ultra-violet resistance protein B
YPA_1064	PF09905	Uncharacterized conserved protein (DUF2132)
YPA_1065	PF01933	Uncharacterised protein family UPF0052
YPA_1066	PF04055	Radical SAM superfamily
YPA_1066	PF06463	Molybdenum Cofactor Synthesis C
YPA_1066	PF13353	4Fe-4S single cluster domain
YPA_1067	PF01967	MoaC family
YPA_1068	PF02597	ThiS family
YPA_1069	PF02391	MoaE protein
YPA_1070	PF01027	Inhibitor of apoptosis-promoting Bax1
YPA_1071	PF01027	Inhibitor of apoptosis-promoting Bax1
YPA_1072	PF01797	Transposase IS200 like
YPA_1073	PF00732	GMC oxidoreductase
YPA_1073	PF05199	GMC oxidoreductase
YPA_1074	PF00171	Aldehyde dehydrogenase family
YPA_1075	PF00440	Bacterial regulatory proteins, tetR family
YPA_1075	PF13977	Bacterial transcriptional repressor
YPA_1076	PF02028	BCCT family transporter
YPA_1077	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
YPA_1077	PF03466	LysR substrate binding domain
YPA_1078	PF00892	EamA-like transporter family
YPA_1079	PF01048	Phosphorylase superfamily
YPA_1080	PF03825	YPA_1080
YPA_1081	PF01797	Transposase IS200 like
YPA_1082	PF03825	YPA_1082
YPA_1083	PF13801	Heavy-metal resistance
YPA_1084	PF00512	His Kinase A (phospho-acceptor) domain
YPA_1084	PF00989	PAS fold
YPA_1084	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
YPA_1084	PF17203	YPA_1084
YPA_1085	PF00072	Response regulator receiver domain
YPA_1085	PF00158	Sigma-54 interaction domain
YPA_1085	PF02954	Bacterial regulatory protein, Fis family
YPA_1086	PF00724	NADH:flavin oxidoreductase / NADH oxidase family
YPA_1087	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
YPA_1087	PF03466	LysR substrate binding domain
YPA_1089	PF07110	EthD domain
YPA_1090	PF12698	ABC-2 family transporter protein
YPA_1091	PF12698	ABC-2 family transporter protein
YPA_1092	PF00005	ABC transporter
YPA_1093	PF16576	YPA_1093
YPA_1094	PF00440	Bacterial regulatory proteins, tetR family
YPA_1094	PF09209	Domain of unknown function (DUF1956)
YPA_1095	PF00270	DEAD/DEAH box helicase
YPA_1095	PF00271	Helicase conserved C-terminal domain
YPA_1097	PF13358	DDE superfamily endonuclease
YPA_1101	PF00872	YPA_1101
YPA_1102	PF00356	Bacterial regulatory proteins, lacI family
YPA_1102	PF00532	Periplasmic binding proteins and sugar binding domain of LacI family
YPA_1103	PF00665	Integrase core domain
YPA_1103	PF02796	Helix-turn-helix domain of resolvase
YPA_1104	PF01695	IstB-like ATP binding protein
YPA_1106	PF06167	Glucose-regulated metallo-peptidase M90
YPA_1107	PF03795	YCII-related domain
YPA_1108	PF01163	RIO1 family
YPA_1109	PF00005	ABC transporter
YPA_1109	PF00664	ABC transporter transmembrane region
YPA_1111	PF12833	Helix-turn-helix domain
YPA_1112	PF10964	YPA_1112
YPA_1113	PF13996	YPA_1113
YPA_1114	PF13974	YPA_1114
YPA_1115	PF10765	Protein of unknown function (DUF2591)
YPA_1116	PF13269	YPA_1116
YPA_1117	PF00324	Amino acid permease
YPA_1118	PF07017	Antimicrobial peptide resistance and lipid A acylation protein PagP
YPA_1119	PF10736	YPA_1119
YPA_1120	PF00313	'Cold-shock' DNA-binding domain
YPA_1121	PF02578	Multi-copper polyphenol oxidoreductase laccase
YPA_1122	PF13847	Methyltransferase domain
YPA_1124	PF00989	PAS fold
YPA_1124	PF00990	GGDEF domain
YPA_1124	PF13426	PAS domain
YPA_1125	PF00593	TonB dependent receptor
YPA_1125	PF07715	TonB-dependent Receptor Plug Domain
YPA_1126	PF02659	YPA_1126
YPA_1127	PF06173	YPA_1127
YPA_1128	PF03613	YPA_1128
YPA_1129	PF03609	YPA_1129
YPA_1130	PF03610	PTS system fructose IIA component
YPA_1130	PF03830	PTS system sorbose subfamily IIB component
YPA_1131	PF00571	CBS domain
YPA_1131	PF03471	Transporter associated domain
YPA_1131	PF03741	YPA_1131
YPA_1132	PF01047	MarR family
YPA_1133	PF01557	Fumarylacetoacetate (FAA) hydrolase family
YPA_1134	PF01557	Fumarylacetoacetate (FAA) hydrolase family
YPA_1135	PF00171	Aldehyde dehydrogenase family
YPA_1136	PF02900	Catalytic LigB subunit of aromatic ring-opening dioxygenase
YPA_1137	PF02962	5-carboxymethyl-2-hydroxymuconate isomerase
YPA_1139	PF03328	HpcH/HpaI aldolase/citrate lyase family
YPA_1140	PF07690	Major Facilitator Superfamily
YPA_1140	PF11700	YPA_1140
YPA_1141	PF03241	4-hydroxyphenylacetate 3-hydroxylase C terminal
YPA_1141	PF11794	4-hydroxyphenylacetate 3-hydroxylase N terminal
YPA_1142	PF01613	Flavin reductase like domain
YPA_1143	PF03313	YPA_1143
YPA_1143	PF03315	Serine dehydratase beta chain
YPA_1144	PF00293	NUDIX domain
YPA_1145	PF00425	chorismate binding enzyme
YPA_1145	PF04715	Anthranilate synthase component I, N terminal region
YPA_1146	PF03701	YPA_1146
YPA_1147	PF02222	ATP-grasp domain
YPA_1148	PF00270	DEAD/DEAH box helicase
YPA_1148	PF00271	Helicase conserved C-terminal domain
YPA_1148	PF03880	DbpA RNA binding domain
YPA_1149	PF07130	YebG protein
YPA_1150	PF04266	ASCH domain
YPA_1151	PF13995	YebF-like protein
YPA_1152	PF00326	Prolyl oligopeptidase family
YPA_1152	PF02897	Prolyl oligopeptidase, N-terminal beta-propeller domain
YPA_1154	PF00665	Integrase core domain
YPA_1154	PF02796	Helix-turn-helix domain of resolvase
YPA_1155	PF01695	IstB-like ATP binding protein
YPA_1156	PF00561	alpha/beta hydrolase fold
YPA_1157	PF06440	DNA polymerase III, theta subunit
YPA_1158	PF00210	Ferritin-like domain
YPA_1159	PF04234	CopC domain
YPA_1160	PF05425	YPA_1160
YPA_1161	PF10709	YPA_1161
YPA_1162	PF07377	Protein of unknown function (DUF1493)
YPA_1164	PF01312	FlhB HrpN YscU SpaS Family
YPA_1165	PF00771	FHIPEP family
YPA_1166	PF00771	FHIPEP family
YPA_1167	PF06366	YPA_1167
YPA_1168	PF11924	Protein of unknown function (DUF3442)
YPA_1169	PF01797	Transposase IS200 like
YPA_1170	PF02369	Bacterial Ig-like domain (group 1)
YPA_1170	PF07979	Intimin C-type lectin domain
YPA_1170	PF09134	Invasin, domain 3
YPA_1170	PF11924	Protein of unknown function (DUF3442)
YPA_1171	PF05130	FlgN protein
YPA_1172	PF04316	Anti-sigma-28 factor, FlgM
YPA_1173	PF13144	SAF-like
YPA_1174	PF00460	Flagella basal body rod protein
YPA_1175	PF00460	Flagella basal body rod protein
YPA_1175	PF06429	Flagellar basal body rod FlgEFG protein C-terminal
YPA_1176	PF03963	YPA_1176
YPA_1176	PF13860	FlgD Ig-like domain
YPA_1176	PF13861	FlgD Tudor-like domain
YPA_1177	PF00460	Flagella basal body rod protein
YPA_1177	PF06429	Flagellar basal body rod FlgEFG protein C-terminal
YPA_1177	PF07559	Flagellar basal body protein FlaE
YPA_1178	PF00460	Flagella basal body rod protein
YPA_1179	PF06429	Flagellar basal body rod FlgEFG protein C-terminal
YPA_1180	PF02107	YPA_1180
YPA_1181	PF02119	YPA_1181
YPA_1182	PF01832	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase
YPA_1182	PF10135	YPA_1182
YPA_1183	PF00460	Flagella basal body rod protein
YPA_1183	PF06429	Flagellar basal body rod FlgEFG protein C-terminal
YPA_1184	PF00669	Bacterial flagellin N-terminal helical region
YPA_1185	PF04198	Putative sugar-binding domain
YPA_1186	PF00596	Class II Aldolase and Adducin N-terminal domain
YPA_1186	PF13561	Enoyl-(Acyl carrier protein) reductase
YPA_1187	PF02653	YPA_1187
YPA_1188	PF13407	Periplasmic binding protein domain
YPA_1189	PF00005	ABC transporter
YPA_1190	PF02653	YPA_1190
YPA_1191	PF00294	pfkB family carbohydrate kinase
YPA_1192	PF15919	YPA_1192
YPA_1193	PF07927	YcfA-like protein
YPA_1194	PF01311	YPA_1194
YPA_1195	PF01313	YPA_1195
YPA_1196	PF00813	YPA_1196
YPA_1197	PF04347	YPA_1197
YPA_1198	PF01052	Surface presentation of antigens (SPOA)
YPA_1198	PF16973	YPA_1198
YPA_1199	PF01052	Surface presentation of antigens (SPOA)
YPA_1199	PF02154	Flagellar motor switch protein FliM
YPA_1200	PF03748	YPA_1200
YPA_1201	PF02120	Flagellar hook-length control protein FliK
YPA_1202	PF02050	Flagellar FliJ protein
YPA_1203	PF00006	ATP synthase alpha/beta family, nucleotide-binding domain
YPA_1204	PF02108	YPA_1204
YPA_1205	PF01706	FliG C-terminal domain
YPA_1205	PF14841	FliG middle domain
YPA_1205	PF14842	FliG N-terminal domain
YPA_1206	PF01514	Secretory protein of YscJ/FliF family
YPA_1206	PF08345	YPA_1206
YPA_1207	PF02049	YPA_1207
YPA_1209	PF02661	Fic/DOC family
YPA_1210	PF00730	HhH-GPD superfamily base excision DNA repair protein
YPA_1211	PF13487	HD domain
YPA_1214	PF12833	Helix-turn-helix domain
YPA_1215	PF05400	Flagellar protein FliT
YPA_1216	PF02561	Flagellar protein FliS
YPA_1217	PF02465	YPA_1217
YPA_1217	PF07195	YPA_1217
YPA_1217	PF07196	Flagellin hook IN motif
YPA_1218	PF00669	Bacterial flagellin N-terminal helical region
YPA_1218	PF00700	Bacterial flagellin C-terminal helical region
YPA_1219	PF04539	Sigma-70 region 3
YPA_1219	PF04542	Sigma-70 region 2
YPA_1219	PF04545	Sigma-70, region 4
YPA_1220	PF02899	Phage integrase, N-terminal SAM-like domain
YPA_1221	PF00291	Pyridoxal-phosphate dependent enzyme
YPA_1222	PF00497	Bacterial extracellular solute-binding proteins, family 3
YPA_1223	PF00528	Binding-protein-dependent transport system inner membrane component
YPA_1224	PF00005	ABC transporter
YPA_1227	PF01695	IstB-like ATP binding protein
YPA_1228	PF00665	Integrase core domain
YPA_1228	PF02796	Helix-turn-helix domain of resolvase
YPA_1229	PF00171	Aldehyde dehydrogenase family
YPA_1229	PF01619	Proline dehydrogenase
YPA_1229	PF14850	DNA-binding domain of Proline dehydrogenase
YPA_1231	PF00474	Sodium:solute symporter family
YPA_1232	PF03239	YPA_1232
YPA_1233	PF09375	Imelysin
YPA_1233	PF13473	Cupredoxin-like domain
YPA_1234	PF04261	Dyp-type peroxidase family
YPA_1235	PF04261	Dyp-type peroxidase family
YPA_1236	PF03358	NADPH-dependent FMN reductase
YPA_1237	PF01344	Kelch motif
YPA_1238	PF00324	Amino acid permease
YPA_1239	PF13505	Outer membrane protein beta-barrel domain
YPA_1241	PF06942	YPA_1241
YPA_1242	PF10769	YPA_1242
YPA_1243	PF00072	Response regulator receiver domain
YPA_1243	PF00196	Bacterial regulatory proteins, luxR family
YPA_1244	PF01541	GIY-YIG catalytic domain
YPA_1244	PF02151	UvrB/uvrC motif
YPA_1244	PF08459	UvrC Helix-hairpin-helix N-terminal
YPA_1244	PF14520	Helix-hairpin-helix domain
YPA_1245	PF01066	CDP-alcohol phosphatidyltransferase
YPA_1247	PF03796	DnaB-like helicase C terminal domain
YPA_1249	PF05638	Protein of unknown function (DUF796)
YPA_1250	PF00665	Integrase core domain
YPA_1250	PF13565	YPA_1250
YPA_1251	PF01527	Transposase
YPA_1253	PF10908	YPA_1253
YPA_1255	PF04965	Gene 25-like lysozyme
YPA_1256	PF04717	Phage-related baseplate assembly protein
YPA_1257	PF04365	Protein of unknown function (DUF497)
YPA_1258	PF14384	YPA_1258
YPA_1259	PF13676	TIR domain
YPA_1260	PF00872	YPA_1260
YPA_1261	PF00872	YPA_1261
YPA_1264	PF13333	YPA_1264
YPA_1266	PF00392	Bacterial regulatory proteins, gntR family
YPA_1266	PF07702	UTRA domain
YPA_1268	PF01408	Oxidoreductase family, NAD-binding Rossmann fold
YPA_1269	PF01547	Bacterial extracellular solute-binding protein
YPA_1270	PF00528	Binding-protein-dependent transport system inner membrane component
YPA_1271	PF00528	Binding-protein-dependent transport system inner membrane component
YPA_1272	PF00005	ABC transporter
YPA_1273	PF08402	TOBE domain
YPA_1275	PF00665	Integrase core domain
YPA_1275	PF02796	Helix-turn-helix domain of resolvase
YPA_1276	PF01695	IstB-like ATP binding protein
YPA_1277	PF05321	Haemolysin expression modulating protein
YPA_1278	PF01258	Prokaryotic dksA/traR C4-type zinc finger
YPA_1279	PF11198	YPA_1279
YPA_1281	PF05930	Prophage CP4-57 regulatory protein (AlpA)
YPA_1284	PF00593	TonB dependent receptor
YPA_1284	PF07715	TonB-dependent Receptor Plug Domain
YPA_1285	PF00501	AMP-binding enzyme
YPA_1285	PF13193	AMP-binding enzyme C-terminal domain
YPA_1286	PF00975	Thioesterase domain
YPA_1287	PF01408	Oxidoreductase family, NAD-binding Rossmann fold
YPA_1288	PF00109	Beta-ketoacyl synthase, N-terminal domain
YPA_1288	PF00550	Phosphopantetheine attachment site
YPA_1288	PF00668	Condensation domain
YPA_1288	PF00698	Acyl transferase domain
YPA_1288	PF00975	Thioesterase domain
YPA_1288	PF02801	Beta-ketoacyl synthase, C-terminal domain
YPA_1288	PF08242	Methyltransferase domain
YPA_1288	PF08659	KR domain
YPA_1288	PF16197	YPA_1288
YPA_1289	PF00501	AMP-binding enzyme
YPA_1289	PF00550	Phosphopantetheine attachment site
YPA_1289	PF00668	Condensation domain
YPA_1289	PF08242	Methyltransferase domain
YPA_1290	PF12833	Helix-turn-helix domain
YPA_1291	PF00005	ABC transporter
YPA_1291	PF00664	ABC transporter transmembrane region
YPA_1292	PF00005	ABC transporter
YPA_1292	PF00664	ABC transporter transmembrane region
YPA_1293	PF07690	Major Facilitator Superfamily
YPA_1294	PF00425	chorismate binding enzyme
YPA_1295	PF00589	Phage integrase family
YPA_1295	PF13356	Domain of unknown function (DUF4102)
YPA_1296	PF00345	Pili and flagellar-assembly chaperone, PapD N-terminal domain
YPA_1296	PF02753	Pili assembly chaperone PapD, C-terminal domain
YPA_1297	PF00419	Fimbrial protein
YPA_1298	PF00577	Outer membrane usher protein
YPA_1298	PF13953	PapC C-terminal domain
YPA_1298	PF13954	PapC N-terminal domain
YPA_1299	PF00345	Pili and flagellar-assembly chaperone, PapD N-terminal domain
YPA_1299	PF02753	Pili assembly chaperone PapD, C-terminal domain
YPA_1300	PF00419	Fimbrial protein
YPA_1302	PF00072	Response regulator receiver domain
YPA_1302	PF00497	Bacterial extracellular solute-binding proteins, family 3
YPA_1302	PF00512	His Kinase A (phospho-acceptor) domain
YPA_1302	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
YPA_1303	PF00072	Response regulator receiver domain
YPA_1303	PF00196	Bacterial regulatory proteins, luxR family
YPA_1304	PF02550	Acetyl-CoA hydrolase/transferase N-terminal domain
YPA_1304	PF13336	Acetyl-CoA hydrolase/transferase C-terminal domain
YPA_1305	PF01575	MaoC like domain
YPA_1306	PF03328	HpcH/HpaI aldolase/citrate lyase family
YPA_1307	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
YPA_1307	PF03466	LysR substrate binding domain
YPA_1310	PF07690	Major Facilitator Superfamily
YPA_1311	PF01695	IstB-like ATP binding protein
YPA_1313	PF00665	Integrase core domain
YPA_1313	PF02796	Helix-turn-helix domain of resolvase
YPA_1314	PF07690	Major Facilitator Superfamily
YPA_1315	PF04909	Amidohydrolase
YPA_1316	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
YPA_1316	PF03466	LysR substrate binding domain
YPA_1317	PF02508	YPA_1317
YPA_1318	PF00155	Aminotransferase class I and II
YPA_1319	PF00324	Amino acid permease
YPA_1320	PF00455	YPA_1320
YPA_1320	PF08220	DeoR-like helix-turn-helix domain
YPA_1322	PF04960	Glutaminase
YPA_1323	PF07690	Major Facilitator Superfamily
YPA_1324	PF03239	YPA_1324
YPA_1325	PF10634	Fe2+ transport protein
YPA_1326	PF04945	YHS domain
YPA_1326	PF10080	YPA_1326
YPA_1327	PF02687	YPA_1327
YPA_1328	PF02687	YPA_1328
YPA_1328	PF12704	MacB-like periplasmic core domain
YPA_1329	PF00005	ABC transporter
YPA_1330	PF00578	AhpC/TSA family
YPA_1331	PF13442	Cytochrome C oxidase, cbb3-type, subunit III
YPA_1332	PF03848	Tellurite resistance protein TehB
YPA_1332	PF09313	Domain of unknown function (DUF1971)
YPA_1333	PF00557	Metallopeptidase family M24
YPA_1333	PF01321	Creatinase/Prolidase N-terminal domain
YPA_1335	PF01522	Polysaccharide deacetylase
YPA_1335	PF14883	Hypothetical glycosyl hydrolase family 13
YPA_1336	PF00535	Glycosyl transferase family 2
YPA_1337	PF13994	YPA_1337
YPA_1338	PF13302	Acetyltransferase (GNAT) domain
YPA_1340	PF02562	PhoH-like protein
YPA_1341	PF01699	Sodium/calcium exchanger protein
YPA_1342	PF00672	HAMP domain
YPA_1342	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
YPA_1342	PF07730	Histidine kinase
YPA_1342	PF13675	Type IV pili methyl-accepting chemotaxis transducer N-term
YPA_1343	PF00155	Aminotransferase class I and II
YPA_1343	PF00392	Bacterial regulatory proteins, gntR family
YPA_1344	PF00202	Aminotransferase class-III
YPA_1345	PF04958	Arginine N-succinyltransferase beta subunit
YPA_1346	PF00171	Aldehyde dehydrogenase family
YPA_1347	PF04996	Succinylarginine dihydrolase
YPA_1348	PF04952	Succinylglutamate desuccinylase / Aspartoacylase family
YPA_1349	PF00267	Gram-negative porin
YPA_1350	PF00665	Integrase core domain
YPA_1350	PF02796	Helix-turn-helix domain of resolvase
YPA_1351	PF01695	IstB-like ATP binding protein
YPA_1352	PF00267	Gram-negative porin
YPA_1353	PF05013	N-formylglutamate amidohydrolase
YPA_1354	PF01979	Amidohydrolase family
YPA_1355	PF00392	Bacterial regulatory proteins, gntR family
YPA_1355	PF07702	UTRA domain
YPA_1356	PF01979	Amidohydrolase family
YPA_1357	PF05962	HutD
YPA_1358	PF00425	chorismate binding enzyme
YPA_1359	PF08545	3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III
YPA_1360	PF08541	3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal
YPA_1361	PF01370	NAD dependent epimerase/dehydratase family
YPA_1362	PF00753	Metallo-beta-lactamase superfamily
YPA_1364	PF01370	NAD dependent epimerase/dehydratase family
YPA_1365	PF13506	Glycosyl transferase family 21
YPA_1367	PF04101	Glycosyltransferase family 28 C-terminal domain
YPA_1370	PF00872	YPA_1370
YPA_1371	PF07661	YPA_1371
YPA_1371	PF08238	Sel1 repeat
YPA_1372	PF13226	YPA_1372
YPA_1373	PF02502	Ribose/Galactose Isomerase
YPA_1373	PF12408	Ribose-5-phosphate isomerase
YPA_1374	PF08242	Methyltransferase domain
YPA_1375	PF00106	short chain dehydrogenase
YPA_1378	PF13646	HEAT repeats
YPA_1379	PF12697	Alpha/beta hydrolase family
YPA_1380	PF07883	Cupin domain
YPA_1381	PF02627	Carboxymuconolactone decarboxylase family
YPA_1382	PF00512	His Kinase A (phospho-acceptor) domain
YPA_1382	PF00672	HAMP domain
YPA_1382	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
YPA_1383	PF00072	Response regulator receiver domain
YPA_1383	PF00486	Transcriptional regulatory protein, C terminal
YPA_1384	PF01738	Dienelactone hydrolase family
YPA_1385	PF12682	Flavodoxin
YPA_1386	PF14358	YPA_1386
YPA_1387	PF13316	YPA_1387
YPA_1389	PF07859	alpha/beta hydrolase fold
YPA_1390	PF00581	Rhodanese-like domain
YPA_1391	PF00665	Integrase core domain
YPA_1393	PF01926	50S ribosome-binding GTPase
YPA_1393	PF06071	Protein of unknown function (DUF933)
YPA_1394	PF01195	Peptidyl-tRNA hydrolase
YPA_1395	PF10762	YPA_1395
YPA_1396	PF13793	N-terminal domain of ribose phosphate pyrophosphokinase
YPA_1396	PF14572	Phosphoribosyl synthetase-associated domain
YPA_1398	PF00288	GHMP kinases N terminal domain
YPA_1398	PF08544	GHMP kinases C terminal
YPA_1399	PF03550	Outer membrane lipoprotein LolB
YPA_1400	PF00745	Glutamyl-tRNAGlu reductase, dimerisation domain
YPA_1400	PF01488	Shikimate / quinate 5-dehydrogenase
YPA_1400	PF05201	Glutamyl-tRNAGlu reductase, N-terminal domain
YPA_1401	PF00472	RF-1 domain
YPA_1401	PF03462	PCRF domain
YPA_1402	PF13847	Methyltransferase domain
YPA_1403	PF04247	YPA_1403
YPA_1404	PF13369	YPA_1404
YPA_1404	PF13371	Tetratricopeptide repeat
YPA_1405	PF00793	DAHP synthetase I family
YPA_1407	PF01695	IstB-like ATP binding protein
YPA_1408	PF00665	Integrase core domain
YPA_1408	PF02796	Helix-turn-helix domain of resolvase
YPA_1409	PF00916	YPA_1409
YPA_1410	PF03009	Glycerophosphoryl diester phosphodiesterase family
YPA_1411	PF13416	Bacterial extracellular solute-binding protein
YPA_1412	PF00528	Binding-protein-dependent transport system inner membrane component
YPA_1413	PF00528	Binding-protein-dependent transport system inner membrane component
YPA_1414	PF00005	ABC transporter
YPA_1415	PF01797	Transposase IS200 like
YPA_1416	PF00005	ABC transporter
YPA_1417	PF03009	Glycerophosphoryl diester phosphodiesterase family
YPA_1418	PF00480	ROK family
YPA_1418	PF13412	Winged helix-turn-helix DNA-binding
YPA_1419	PF02811	PHP domain
YPA_1420	PF02613	Nitrate reductase delta subunit
YPA_1421	PF07273	Protein of unknown function (DUF1439)
YPA_1422	PF07690	Major Facilitator Superfamily
YPA_1423	PF13302	Acetyltransferase (GNAT) domain
YPA_1424	PF01408	Oxidoreductase family, NAD-binding Rossmann fold
YPA_1424	PF04337	Protein of unknown function, DUF480
YPA_1425	PF03023	YPA_1425
YPA_1426	PF03865	Haemolysin secretion/activation protein ShlB/FhaC/HecB
YPA_1426	PF08479	POTRA domain, ShlB-type
YPA_1426	PF17287	YPA_1426
YPA_1427	PF05860	haemagglutination activity domain
YPA_1427	PF13332	YPA_1427
YPA_1428	PF00750	tRNA synthetases class I (R)
YPA_1428	PF03485	Arginyl tRNA synthetase N terminal domain
YPA_1428	PF05746	DALR anticodon binding domain
YPA_1429	PF06185	YecM protein
YPA_1430	PF03932	CutC family
YPA_1431	PF08003	Protein of unknown function (DUF1698)
YPA_1432	PF13649	Methyltransferase domain
YPA_1433	PF01124	MAPEG family
YPA_1434	PF01904	Protein of unknown function DUF72
YPA_1435	PF00152	tRNA synthetases class II (D, K and N)
YPA_1435	PF01336	OB-fold nucleic acid binding domain
YPA_1435	PF02938	GAD domain
YPA_1436	PF00293	NUDIX domain
YPA_1437	PF01709	Transcriptional regulator
YPA_1438	PF02075	Crossover junction endodeoxyribonuclease RuvC
YPA_1439	PF01797	Transposase IS200 like
YPA_1440	PF01330	RuvA N terminal domain
YPA_1440	PF07499	RuvA, C-terminal domain
YPA_1440	PF14520	Helix-hairpin-helix domain
YPA_1441	PF05491	Holliday junction DNA helicase ruvB C-terminus
YPA_1441	PF05496	Holliday junction DNA helicase ruvB N-terminus
YPA_1442	PF00950	YPA_1442
YPA_1443	PF00005	ABC transporter
YPA_1444	PF01297	Periplasmic solute binding protein family
YPA_1445	PF01551	Peptidase family M23
YPA_1445	PF04225	Opacity-associated protein A LysM-like domain
YPA_1445	PF08525	YPA_1445
YPA_1446	PF03279	YPA_1446
YPA_1447	PF00224	Pyruvate kinase, barrel domain
YPA_1447	PF02887	Pyruvate kinase, alpha/beta domain
YPA_1448	PF01380	SIS domain
YPA_1448	PF01418	Helix-turn-helix domain, rpiR family
YPA_1449	PF00479	Glucose-6-phosphate dehydrogenase, NAD binding domain
YPA_1449	PF02781	Glucose-6-phosphate dehydrogenase, C-terminal domain
YPA_1450	PF01081	KDPG and KHG aldolase
YPA_1451	PF00893	Small Multidrug Resistance protein
YPA_1452	PF00893	Small Multidrug Resistance protein
YPA_1453	PF01042	Endoribonuclease L-PSP
YPA_1454	PF06733	DEAD_2
YPA_1454	PF13307	Helicase C-terminal domain
YPA_1455	PF00814	Glycoprotease family
YPA_1456	PF03843	YPA_1456
YPA_1457	PF00501	AMP-binding enzyme
YPA_1457	PF13193	AMP-binding enzyme C-terminal domain
YPA_1458	PF00570	HRDC domain
YPA_1458	PF01612	3'-5' exonuclease
YPA_1459	PF03776	Septum formation topological specificity factor MinE
YPA_1460	PF01656	CobQ/CobB/MinD/ParA nucleotide binding domain
YPA_1461	PF03775	Septum formation inhibitor MinC, C-terminal domain
YPA_1461	PF05209	Septum formation inhibitor MinC, N-terminal domain
YPA_1462	PF05166	YcgL domain
YPA_1463	PF13406	Transglycosylase SLT domain
YPA_1464	PF01557	Fumarylacetoacetate (FAA) hydrolase family
YPA_1465	PF03692	YPA_1465
YPA_1466	PF00589	Phage integrase family
YPA_1466	PF12167	YPA_1466
YPA_1467	PF00665	Integrase core domain
YPA_1467	PF02796	Helix-turn-helix domain of resolvase
YPA_1468	PF01695	IstB-like ATP binding protein
YPA_1472	PF02368	Bacterial Ig-like domain (group 2)
YPA_1477	PF13554	Bacteriophage related domain of unknown function
YPA_1478	PF02368	Bacterial Ig-like domain (group 2)
YPA_1478	PF08813	YPA_1478
YPA_1479	PF08748	YPA_1479
YPA_1480	PF06791	YPA_1480
YPA_1480	PF09718	YPA_1480
YPA_1481	PF05939	YPA_1481
YPA_1482	PF01797	Transposase IS200 like
YPA_1483	PF05100	YPA_1483
YPA_1484	PF00877	NlpC/P60 family
YPA_1484	PF14464	Prokaryotic homologs of the JAB domain
YPA_1486	PF03869	Arc-like DNA binding domain
YPA_1487	PF02498	YPA_1487
YPA_1488	PF13248	YPA_1488
YPA_1489	PF06805	YPA_1489
YPA_1490	PF09327	YPA_1490
YPA_1490	PF13550	YPA_1490
YPA_1493	PF02413	YPA_1493
YPA_1495	PF00872	YPA_1495
YPA_1498	PF00266	Aminotransferase class-V
YPA_1501	PF02600	Disulfide bond formation protein DsbB
YPA_1502	PF06450	YPA_1502
YPA_1503	PF00392	Bacterial regulatory proteins, gntR family
YPA_1503	PF07840	FadR C-terminal domain
YPA_1504	PF04293	YPA_1504
YPA_1505	PF01266	FAD dependent oxidoreductase
YPA_1506	PF07690	Major Facilitator Superfamily
YPA_1507	PF02678	Pirin
YPA_1507	PF05726	Pirin C-terminal cupin domain
YPA_1508	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
YPA_1508	PF03466	LysR substrate binding domain
YPA_1509	PF00892	EamA-like transporter family
YPA_1510	PF04285	YPA_1510
YPA_1511	PF06798	YPA_1511
YPA_1511	PF08298	PrkA AAA domain
YPA_1512	PF06629	YPA_1512
YPA_1513	PF01263	Aldose 1-epimerase
YPA_1514	PF00044	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
YPA_1514	PF02800	Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain
YPA_1515	PF01641	SelR domain
YPA_1516	PF07023	YPA_1516
YPA_1517	PF00857	Isochorismatase family
YPA_1518	PF00710	Asparaginase
YPA_1519	PF01343	Peptidase family S49
YPA_1520	PF00881	Nitroreductase family
YPA_1521	PF00586	AIR synthase related protein, N-terminal domain
YPA_1521	PF02769	AIR synthase related protein, C-terminal domain
YPA_1522	PF01131	DNA topoisomerase
YPA_1522	PF01751	Toprim domain
YPA_1523	PF07383	YPA_1523
YPA_1524	PF00293	NUDIX domain
YPA_1525	PF03372	Endonuclease/Exonuclease/phosphatase family
YPA_1526	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
YPA_1528	PF00872	YPA_1528
YPA_1529	PF00551	Formyl transferase
YPA_1529	PF01842	ACT domain
YPA_1530	PF02810	SEC-C motif
YPA_1531	PF00072	Response regulator receiver domain
YPA_1532	PF00984	UDP-glucose/GDP-mannose dehydrogenase family, central domain
YPA_1532	PF03720	UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain
YPA_1532	PF03721	UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain
YPA_1533	PF00816	H-NS histone family
YPA_1534	PF00265	Thymidine kinase
YPA_1535	PF01695	IstB-like ATP binding protein
YPA_1536	PF00665	Integrase core domain
YPA_1536	PF02796	Helix-turn-helix domain of resolvase
YPA_1537	PF00171	Aldehyde dehydrogenase family
YPA_1537	PF00465	Iron-containing alcohol dehydrogenase
YPA_1538	PF01914	YPA_1538
YPA_1539	PF00496	Bacterial extracellular solute-binding proteins, family 5 Middle
YPA_1540	PF00528	Binding-protein-dependent transport system inner membrane component
YPA_1541	PF00528	Binding-protein-dependent transport system inner membrane component
YPA_1541	PF12911	YPA_1541
YPA_1542	PF00005	ABC transporter
YPA_1542	PF08352	Oligopeptide/dipeptide transporter, C-terminal region
YPA_1543	PF00005	ABC transporter
YPA_1543	PF08352	Oligopeptide/dipeptide transporter, C-terminal region
YPA_1545	PF04269	Protein of unknown function, DUF440
YPA_1546	PF13091	PLD-like domain
YPA_1546	PF13396	YPA_1546
YPA_1547	PF13505	Outer membrane protein beta-barrel domain
YPA_1550	PF13453	YPA_1550
YPA_1551	PF03795	YCII-related domain
YPA_1552	PF03544	Gram-negative bacterial TonB protein C-terminal
YPA_1552	PF16031	YPA_1552
YPA_1553	PF00872	YPA_1553
YPA_1554	PF03061	Thioesterase superfamily
YPA_1555	PF04279	YPA_1555
YPA_1556	PF00916	YPA_1556
YPA_1557	PF01740	STAS domain
YPA_1558	PF06790	YPA_1558
YPA_1560	PF03922	OmpW family
YPA_1561	PF04972	BON domain
YPA_1563	PF00290	Tryptophan synthase alpha chain
YPA_1564	PF00291	Pyridoxal-phosphate dependent enzyme
YPA_1565	PF00218	Indole-3-glycerol phosphate synthase
YPA_1565	PF00697	N-(5'phosphoribosyl)anthranilate (PRA) isomerase
YPA_1566	PF00591	Glycosyl transferase family, a/b domain
YPA_1566	PF02885	Glycosyl transferase family, helical bundle domain
YPA_1567	PF00117	Glutamine amidotransferase class-I
YPA_1568	PF00425	chorismate binding enzyme
YPA_1568	PF04715	Anthranilate synthase component I, N terminal region
YPA_1569	PF02811	PHP domain
YPA_1570	PF01300	Telomere recombination
YPA_1571	PF00849	RNA pseudouridylate synthase
YPA_1571	PF01479	S4 domain
YPA_1572	PF02572	ATP:corrinoid adenosyltransferase BtuR/CobO/CobP
YPA_1572	PF12557	Cob(I)alamin adenosyltransferase N terminal
YPA_1573	PF00106	short chain dehydrogenase
YPA_1574	PF01343	Peptidase family S49
YPA_1574	PF08496	YPA_1574
YPA_1575	PF10692	Protein of unknown function (DUF2498)
YPA_1577	PF01131	DNA topoisomerase
YPA_1577	PF01396	YPA_1577
YPA_1577	PF01751	Toprim domain
YPA_1577	PF08272	Topoisomerase I zinc-ribbon-like
YPA_1578	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
YPA_1578	PF03466	LysR substrate binding domain
YPA_1580	PF00330	Aconitase family (aconitate hydratase)
YPA_1580	PF00694	Aconitase C-terminal domain
YPA_1581	PF00925	GTP cyclohydrolase II
YPA_1583	PF01569	PAP2 superfamily
YPA_1584	PF06305	YPA_1584
YPA_1585	PF13176	Tetratricopeptide repeat
YPA_1585	PF13432	Tetratricopeptide repeat
YPA_1587	PF00215	Orotidine 5'-phosphate decarboxylase / HUMPS family
YPA_1588	PF01253	Translation initiation factor SUI1
YPA_1589	PF05433	YPA_1589
YPA_1590	PF00596	Class II Aldolase and Adducin N-terminal domain
YPA_1591	PF09932	YPA_1591
YPA_1592	PF00923	Transaldolase
YPA_1593	PF04328	YPA_1593
YPA_1594	PF02554	YPA_1594
YPA_1594	PF13722	YPA_1594
YPA_1595	PF00575	S1 RNA binding domain
YPA_1595	PF00773	RNB domain
YPA_1595	PF08206	Ribonuclease B OB domain
YPA_1596	PF07690	Major Facilitator Superfamily
YPA_1597	PF01370	NAD dependent epimerase/dehydratase family
YPA_1598	PF00633	Helix-hairpin-helix motif
YPA_1598	PF00730	HhH-GPD superfamily base excision DNA repair protein
YPA_1598	PF10576	Iron-sulfur binding domain of endonuclease III
YPA_1599	PF02508	YPA_1599
YPA_1600	PF04205	FMN-binding domain
YPA_1601	PF03116	YPA_1601
YPA_1602	PF06445	GyrI-like small molecule binding domain
YPA_1602	PF12833	Helix-turn-helix domain
YPA_1603	PF01512	Respiratory-chain NADH dehydrogenase 51 Kd subunit
YPA_1603	PF10531	SLBB domain
YPA_1603	PF13237	4Fe-4S dicluster domain
YPA_1603	PF13375	RnfC Barrel sandwich hybrid domain
YPA_1604	PF04060	Putative Fe-S cluster
YPA_1604	PF14697	4Fe-4S dicluster domain
YPA_1605	PF02508	YPA_1605
YPA_1606	PF10754	YPA_1606
YPA_1608	PF00005	ABC transporter
YPA_1608	PF00664	ABC transporter transmembrane region
YPA_1610	PF13533	Biotin-lipoyl like
YPA_1611	PF00529	HlyD family secretion protein
YPA_1612	PF00005	ABC transporter
YPA_1612	PF00664	ABC transporter transmembrane region
YPA_1612	PF03412	Peptidase C39 family
YPA_1613	PF02610	L-arabinose isomerase
YPA_1613	PF11762	L-arabinose isomerase C-terminal domain
YPA_1614	PF00370	FGGY family of carbohydrate kinases, N-terminal domain
YPA_1614	PF02782	FGGY family of carbohydrate kinases, C-terminal domain
YPA_1615	PF00532	Periplasmic binding proteins and sugar binding domain of LacI family
YPA_1616	PF00005	ABC transporter
YPA_1617	PF02653	YPA_1617
YPA_1618	PF02311	AraC-like ligand binding domain
YPA_1618	PF12833	Helix-turn-helix domain
YPA_1619	PF01408	Oxidoreductase family, NAD-binding Rossmann fold
YPA_1619	PF02894	Oxidoreductase family, C-terminal alpha/beta domain
YPA_1620	PF13593	SBF-like CPA transporter family (DUF4137)
YPA_1622	PF06097	YPA_1622
YPA_1623	PF01238	Phosphomannose isomerase type I
YPA_1624	PF00206	Lyase
YPA_1624	PF10415	Fumarase C C-terminus
YPA_1625	PF05472	DNA replication terminus site-binding protein (Ter protein)
YPA_1626	PF07690	Major Facilitator Superfamily
YPA_1627	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
YPA_1627	PF03466	LysR substrate binding domain
YPA_1628	PF00480	ROK family
YPA_1629	PF13500	AAA domain
YPA_1630	PF13377	Periplasmic binding protein-like domain
YPA_1632	PF01695	IstB-like ATP binding protein
YPA_1633	PF00665	Integrase core domain
YPA_1633	PF02796	Helix-turn-helix domain of resolvase
YPA_1635	PF00528	Binding-protein-dependent transport system inner membrane component
YPA_1636	PF00005	ABC transporter
YPA_1637	PF01048	Phosphorylase superfamily
YPA_1637	PF10423	Bacterial AMP nucleoside phosphorylase N-terminus
YPA_1639	PF07520	YPA_1639
YPA_1640	PF10139	YPA_1640
YPA_1641	PF07313	Protein of unknown function (DUF1460)
YPA_1642	PF00205	Thiamine pyrophosphate enzyme, central domain
YPA_1642	PF02775	Thiamine pyrophosphate enzyme, C-terminal TPP binding domain
YPA_1642	PF02776	Thiamine pyrophosphate enzyme, N-terminal TPP binding domain
YPA_1643	PF13710	ACT domain
YPA_1644	PF13419	Haloacid dehalogenase-like hydrolase
YPA_1645	PF15615	YPA_1645
YPA_1646	PF13208	YPA_1646
YPA_1647	PF00245	Alkaline phosphatase
YPA_1648	PF01035	6-O-methylguanine DNA methyltransferase, DNA binding domain
YPA_1648	PF02870	6-O-methylguanine DNA methyltransferase, ribonuclease-like domain
YPA_1649	PF00027	Cyclic nucleotide-binding domain
YPA_1649	PF13545	Crp-like helix-turn-helix domain
YPA_1650	PF00582	Universal stress protein family
YPA_1651	PF02233	NAD(P) transhydrogenase beta subunit
YPA_1652	PF01262	Alanine dehydrogenase/PNT, C-terminal domain
YPA_1652	PF05222	Alanine dehydrogenase/PNT, N-terminal domain
YPA_1652	PF12769	Domain of unknown function (DUF3814)
YPA_1653	PF07338	Protein of unknown function (DUF1471)
YPA_1654	PF13520	Amino acid permease
YPA_1656	PF00072	Response regulator receiver domain
YPA_1656	PF00486	Transcriptional regulatory protein, C terminal
YPA_1657	PF00512	His Kinase A (phospho-acceptor) domain
YPA_1657	PF00672	HAMP domain
YPA_1657	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
YPA_1658	PF02074	Carboxypeptidase Taq (M32) metallopeptidase
YPA_1659	PF01797	Transposase IS200 like
YPA_1660	PF03497	Anthrax toxin LF subunit
YPA_1663	PF04264	YceI-like domain
YPA_1664	PF01292	Prokaryotic cytochrome b561
YPA_1666	PF00089	Trypsin
YPA_1667	PF01381	Helix-turn-helix
YPA_1668	PF07717	Oligonucleotide/oligosaccharide-binding (OB)-fold
YPA_1668	PF11898	YPA_1668
YPA_1669	PF00665	Integrase core domain
YPA_1669	PF02796	Helix-turn-helix domain of resolvase
YPA_1670	PF01695	IstB-like ATP binding protein
YPA_1671	PF00270	DEAD/DEAH box helicase
YPA_1671	PF00271	Helicase conserved C-terminal domain
YPA_1671	PF04408	Helicase associated domain (HA2)
YPA_1672	PF02525	Flavodoxin-like fold
YPA_1673	PF04198	Putative sugar-binding domain
YPA_1674	PF01232	Mannitol dehydrogenase Rossmann domain
YPA_1674	PF08125	Mannitol dehydrogenase C-terminal domain
YPA_1675	PF07027	YPA_1675
YPA_1676	PF13617	YPA_1676
YPA_1677	PF11739	YPA_1677
YPA_1678	PF00389	D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
YPA_1678	PF02826	D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
YPA_1679	PF03724	META domain
YPA_1680	PF03891	YPA_1680
YPA_1681	PF02308	YPA_1681
YPA_1682	PF00893	Small Multidrug Resistance protein
YPA_1683	PF01558	Pyruvate ferredoxin/flavodoxin oxidoreductase
YPA_1683	PF01855	Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg
YPA_1683	PF02775	Thiamine pyrophosphate enzyme, C-terminal TPP binding domain
YPA_1683	PF10371	Domain of unknown function
YPA_1683	PF12838	4Fe-4S dicluster domain
YPA_1683	PF17147	YPA_1683
YPA_1684	PF01171	PP-loop family
YPA_1685	PF07859	alpha/beta hydrolase fold
YPA_1686	PF13411	MerR HTH family regulatory protein
YPA_1687	PF01544	CorA-like Mg2+ transporter protein
YPA_1688	PF00496	Bacterial extracellular solute-binding proteins, family 5 Middle
YPA_1689	PF00246	Zinc carboxypeptidase
YPA_1690	PF02746	Mandelate racemase / muconate lactonizing enzyme, N-terminal domain
YPA_1690	PF13378	Enolase C-terminal domain-like
YPA_1691	PF08534	Redoxin
YPA_1692	PF01797	Transposase IS200 like
YPA_1693	PF00158	Sigma-54 interaction domain
YPA_1693	PF00989	PAS fold
YPA_1694	PF09722	YPA_1694
YPA_1695	PF08808	YPA_1695
YPA_1696	PF05128	YPA_1696
YPA_1697	PF04317	YPA_1697
YPA_1698	PF09584	YPA_1698
YPA_1699	PF04024	YPA_1699
YPA_1700	PF06667	YPA_1700
YPA_1701	PF04012	YPA_1701
YPA_1702	PF00158	Sigma-54 interaction domain
YPA_1702	PF02954	Bacterial regulatory protein, Fis family
YPA_1703	PF01797	Transposase IS200 like
YPA_1704	PF00496	Bacterial extracellular solute-binding proteins, family 5 Middle
YPA_1705	PF00528	Binding-protein-dependent transport system inner membrane component
YPA_1706	PF00528	Binding-protein-dependent transport system inner membrane component
YPA_1706	PF12911	YPA_1706
YPA_1707	PF00005	ABC transporter
YPA_1707	PF08352	Oligopeptide/dipeptide transporter, C-terminal region
YPA_1708	PF00005	ABC transporter
YPA_1710	PF00854	POT family
YPA_1711	PF06930	YPA_1711
YPA_1712	PF11656	YPA_1712
YPA_1714	PF08543	Phosphomethylpyrimidine kinase
YPA_1715	PF00579	tRNA synthetases class I (W and Y)
YPA_1715	PF01479	S4 domain
YPA_1716	PF01243	Pyridoxamine 5'-phosphate oxidase
YPA_1716	PF10590	Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region
YPA_1717	PF09864	Membrane-bound lysozyme-inhibitor of c-type lysozyme
YPA_1718	PF03702	Uncharacterised protein family (UPF0075)
YPA_1719	PF05433	YPA_1719
YPA_1720	PF01047	MarR family
YPA_1721	PF00248	Aldo/keto reductase family
YPA_1722	PF06945	YPA_1722
YPA_1723	PF00884	Sulfatase
YPA_1723	PF08019	YPA_1723
YPA_1724	PF00440	Bacterial regulatory proteins, tetR family
YPA_1724	PF16925	YPA_1724
YPA_1725	PF00724	NADH:flavin oxidoreductase / NADH oxidase family
YPA_1727	PF00903	Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
YPA_1728	PF00929	Exonuclease
YPA_1729	PF00462	Glutaredoxin
YPA_1730	PF00877	NlpC/P60 family
YPA_1731	PF00081	Iron/manganese superoxide dismutases, alpha-hairpin domain
YPA_1731	PF02777	Iron/manganese superoxide dismutases, C-terminal domain
YPA_1732	PF00356	Bacterial regulatory proteins, lacI family
YPA_1732	PF13377	Periplasmic binding protein-like domain
YPA_1733	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
YPA_1733	PF03466	LysR substrate binding domain
YPA_1734	PF07690	Major Facilitator Superfamily
YPA_1735	PF02353	Mycolic acid cyclopropane synthetase
YPA_1736	PF00677	Lumazine binding domain
YPA_1737	PF01554	MatE
YPA_1738	PF00224	Pyruvate kinase, barrel domain
YPA_1738	PF02887	Pyruvate kinase, alpha/beta domain
YPA_1739	PF04728	Lipoprotein leucine-zipper
YPA_1740	PF01797	Transposase IS200 like
YPA_1741	PF00665	Integrase core domain
YPA_1741	PF02796	Helix-turn-helix domain of resolvase
YPA_1742	PF01695	IstB-like ATP binding protein
YPA_1743	PF03734	L,D-transpeptidase catalytic domain
YPA_1744	PF02657	Fe-S metabolism associated domain
YPA_1745	PF00266	Aminotransferase class-V
YPA_1746	PF01458	Uncharacterized protein family (UPF0051)
YPA_1747	PF00005	ABC transporter
YPA_1748	PF01458	Uncharacterized protein family (UPF0051)
YPA_1749	PF01521	Iron-sulphur cluster biosynthesis
YPA_1750	PF03061	Thioesterase superfamily
YPA_1751	PF01565	FAD binding domain
YPA_1751	PF02913	FAD linked oxidases, C-terminal domain
YPA_1751	PF13183	4Fe-4S dicluster domain
YPA_1752	PF01594	YPA_1752
YPA_1753	PF00391	PEP-utilising enzyme, mobile domain
YPA_1753	PF01326	Pyruvate phosphate dikinase, PEP/pyruvate binding domain
YPA_1753	PF02896	PEP-utilising enzyme, TIM barrel domain
YPA_1754	PF03618	YPA_1754
YPA_1755	PF00793	DAHP synthetase I family
YPA_1756	PF02696	YPA_1756
YPA_1757	PF02696	YPA_1757
YPA_1758	PF03099	Biotin/lipoate A/B protein ligase family
YPA_1758	PF10437	Bacterial lipoate protein ligase C-terminus
YPA_1759	PF00877	NlpC/P60 family
YPA_1761	PF00892	EamA-like transporter family
YPA_1762	PF02366	YPA_1762
YPA_1763	PF01522	Polysaccharide deacetylase
YPA_1764	PF00551	Formyl transferase
YPA_1764	PF01370	NAD dependent epimerase/dehydratase family
YPA_1764	PF02911	Formyl transferase, C-terminal domain
YPA_1765	PF00535	Glycosyl transferase family 2
YPA_1766	PF01041	DegT/DnrJ/EryC1/StrS aminotransferase family
YPA_1767	PF00005	ABC transporter
YPA_1768	PF00255	Glutathione peroxidase
YPA_1769	PF01032	FecCD transport family
YPA_1770	PF10697	YPA_1770
YPA_1771	PF00216	Bacterial DNA-binding protein
YPA_1772	PF01588	Putative tRNA binding domain
YPA_1772	PF03147	Ferredoxin-fold anticodon binding domain
YPA_1772	PF03483	B3/4 domain
YPA_1772	PF03484	tRNA synthetase B5 domain
YPA_1773	PF01409	tRNA synthetases class II core domain (F)
YPA_1773	PF02912	Aminoacyl tRNA synthetase class II, N-terminal domain
YPA_1775	PF00453	Ribosomal protein L20
YPA_1776	PF01632	Ribosomal protein L35
YPA_1777	PF00707	Translation initiation factor IF-3, C-terminal domain
YPA_1778	PF00587	tRNA synthetase class II core domain (G, H, P, S and T)
YPA_1778	PF02824	TGS domain
YPA_1778	PF03129	Anticodon binding domain
YPA_1778	PF07973	Threonyl and Alanyl tRNA synthetase second additional domain
YPA_1779	PF13619	YPA_1779
YPA_1781	PF01914	YPA_1781
YPA_1782	PF01464	Transglycosylase SLT domain
YPA_1783	PF01297	Periplasmic solute binding protein family
YPA_1784	PF00005	ABC transporter
YPA_1785	PF00950	YPA_1785
YPA_1786	PF00950	YPA_1786
YPA_1788	PF03881	Fructosamine kinase
YPA_1789	PF14002	YPA_1789
YPA_1790	PF13419	Haloacid dehalogenase-like hydrolase
YPA_1791	PF00872	YPA_1791
YPA_1792	PF07883	Cupin domain
YPA_1793	PF04962	KduI/IolB family
YPA_1794	PF13561	Enoyl-(Acyl carrier protein) reductase
YPA_1795	PF06917	Periplasmic pectate lyase
YPA_1796	PF01695	IstB-like ATP binding protein
YPA_1797	PF00665	Integrase core domain
YPA_1797	PF02796	Helix-turn-helix domain of resolvase
YPA_1798	PF06917	Periplasmic pectate lyase
YPA_1799	PF00528	Binding-protein-dependent transport system inner membrane component
YPA_1800	PF00528	Binding-protein-dependent transport system inner membrane component
YPA_1801	PF00005	ABC transporter
YPA_1802	PF01547	Bacterial extracellular solute-binding protein
YPA_1803	PF06178	Oligogalacturonate-specific porin protein (KdgM)
YPA_1804	PF04307	YPA_1804
YPA_1805	PF00375	Sodium:dicarboxylate symporter family
YPA_1806	PF01471	Putative peptidoglycan binding domain
YPA_1806	PF01510	N-acetylmuramoyl-L-alanine amidase
YPA_1807	PF01614	Bacterial transcriptional regulator
YPA_1807	PF09339	IclR helix-turn-helix domain
YPA_1808	PF14583	Oligogalacturonate lyase
YPA_1809	PF07690	Major Facilitator Superfamily
YPA_1810	PF00345	Pili and flagellar-assembly chaperone, PapD N-terminal domain
YPA_1810	PF02753	Pili assembly chaperone PapD, C-terminal domain
YPA_1812	PF00577	Outer membrane usher protein
YPA_1812	PF13953	PapC C-terminal domain
YPA_1812	PF13954	PapC N-terminal domain
YPA_1813	PF00345	Pili and flagellar-assembly chaperone, PapD N-terminal domain
YPA_1813	PF02753	Pili assembly chaperone PapD, C-terminal domain
YPA_1814	PF16970	YPA_1814
YPA_1815	PF01435	Peptidase family M48
YPA_1816	PF00595	PDZ domain (Also known as DHR or GLGF)
YPA_1816	PF03572	Peptidase family S41
YPA_1816	PF11818	YPA_1816
YPA_1817	PF04352	ProQ/FINO family
YPA_1817	PF17516	YPA_1817
YPA_1818	PF13185	GAF domain
YPA_1819	PF04403	YPA_1819
YPA_1820	PF02470	YPA_1820
YPA_1821	PF05229	YPA_1821
YPA_1822	PF05229	YPA_1822
YPA_1823	PF05229	YPA_1823
YPA_1824	PF00345	Pili and flagellar-assembly chaperone, PapD N-terminal domain
YPA_1825	PF00577	Outer membrane usher protein
YPA_1825	PF13953	PapC C-terminal domain
YPA_1826	PF05229	YPA_1826
YPA_1827	PF07351	YPA_1827
YPA_1828	PF04266	ASCH domain
YPA_1830	PF00665	Integrase core domain
YPA_1830	PF02796	Helix-turn-helix domain of resolvase
YPA_1831	PF01695	IstB-like ATP binding protein
YPA_1833	PF01734	Patatin-like phospholipase
YPA_1835	PF00842	Alanine racemase, C-terminal domain
YPA_1835	PF01168	Alanine racemase, N-terminal domain
YPA_1837	PF03895	YadA-like C-terminal region
YPA_1837	PF05658	Head domain of trimeric autotransporter adhesin
YPA_1837	PF05662	Coiled stalk of trimeric autotransporter adhesin
YPA_1838	PF05658	Head domain of trimeric autotransporter adhesin
YPA_1838	PF05662	Coiled stalk of trimeric autotransporter adhesin
YPA_1839	PF01510	N-acetylmuramoyl-L-alanine amidase
YPA_1841	PF04344	Chemotaxis phosphatase, CheZ
YPA_1842	PF00072	Response regulator receiver domain
YPA_1843	PF00072	Response regulator receiver domain
YPA_1843	PF01339	CheB methylesterase
YPA_1844	PF01739	CheR methyltransferase, SAM binding domain
YPA_1844	PF03705	CheR methyltransferase, all-alpha domain
YPA_1845	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
YPA_1845	PF00672	HAMP domain
YPA_1845	PF02203	Tar ligand binding domain homologue
YPA_1846	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
YPA_1846	PF00672	HAMP domain
YPA_1846	PF02203	Tar ligand binding domain homologue
YPA_1848	PF10101	YPA_1848
YPA_1849	PF03797	Autotransporter beta-domain
YPA_1850	PF08348	YPA_1850
YPA_1850	PF13309	YPA_1850
YPA_1851	PF01261	Xylose isomerase-like TIM barrel
YPA_1852	PF01042	Endoribonuclease L-PSP
YPA_1853	PF07690	Major Facilitator Superfamily
YPA_1854	PF01584	CheW-like domain
YPA_1855	PF01584	CheW-like domain
YPA_1855	PF01627	Hpt domain
YPA_1855	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
YPA_1855	PF02895	Signal transducing histidine kinase, homodimeric domain
YPA_1855	PF09078	CheY binding
YPA_1856	PF00691	OmpA family
YPA_1856	PF13677	YPA_1856
YPA_1857	PF01618	YPA_1857
YPA_1858	PF05280	Flagellar transcriptional activator (FlhC)
YPA_1859	PF05247	Flagellar transcriptional activator (FlhD)
YPA_1860	PF00122	E1-E2 ATPase
YPA_1860	PF00689	Cation transporting ATPase, C-terminus
YPA_1860	PF00690	Cation transporter/ATPase, N-terminus
YPA_1860	PF00702	haloacid dehalogenase-like hydrolase
YPA_1861	PF02308	YPA_1861
YPA_1862	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
YPA_1862	PF02203	Tar ligand binding domain homologue
YPA_1863	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
YPA_1864	PF10781	YPA_1864
YPA_1865	PF00313	'Cold-shock' DNA-binding domain
YPA_1866	PF01695	IstB-like ATP binding protein
YPA_1867	PF00665	Integrase core domain
YPA_1867	PF02796	Helix-turn-helix domain of resolvase
YPA_1868	PF00703	Glycosyl hydrolases family 2
YPA_1868	PF02836	Glycosyl hydrolases family 2, TIM barrel domain
YPA_1868	PF02837	Glycosyl hydrolases family 2, sugar binding domain
YPA_1868	PF02929	Beta galactosidase small chain
YPA_1868	PF16353	YPA_1868
YPA_1869	PF00107	Zinc-binding dehydrogenase
YPA_1869	PF08240	Alcohol dehydrogenase GroES-like domain
YPA_1870	PF10777	YPA_1870
YPA_1872	PF01037	AsnC family
YPA_1872	PF13412	Winged helix-turn-helix DNA-binding
YPA_1873	PF11004	YPA_1873
YPA_1874	PF14001	YPA_1874
YPA_1875	PF00328	Histidine phosphatase superfamily (branch 2)
YPA_1878	PF01638	HxlR-like helix-turn-helix
YPA_1879	PF05368	NmrA-like family
YPA_1880	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
YPA_1880	PF08447	PAS fold
YPA_1882	PF00356	Bacterial regulatory proteins, lacI family
YPA_1882	PF00532	Periplasmic binding proteins and sugar binding domain of LacI family
YPA_1883	PF00180	Isocitrate/isopropylmalate dehydrogenase
YPA_1884	PF00849	RNA pseudouridylate synthase
YPA_1885	PF00293	NUDIX domain
YPA_1886	PF03054	tRNA methyl transferase
YPA_1887	PF04356	Protein of unknown function (DUF489)
YPA_1888	PF00206	Lyase
YPA_1888	PF08328	Adenylosuccinate lyase C-terminal
YPA_1889	PF13505	Outer membrane protein beta-barrel domain
YPA_1890	PF00072	Response regulator receiver domain
YPA_1890	PF00486	Transcriptional regulatory protein, C terminal
YPA_1891	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
YPA_1891	PF08918	PhoQ Sensor
YPA_1892	PF08007	Cupin superfamily protein
YPA_1893	PF01546	Peptidase family M20/M25/M40
YPA_1893	PF07687	Peptidase dimerisation domain
YPA_1894	PF02146	Sir2 family
YPA_1895	PF00480	ROK family
YPA_1896	PF00480	ROK family
YPA_1897	PF02687	YPA_1897
YPA_1897	PF12704	MacB-like periplasmic core domain
YPA_1898	PF00005	ABC transporter
YPA_1899	PF02687	YPA_1899
YPA_1899	PF12704	MacB-like periplasmic core domain
YPA_1900	PF00270	DEAD/DEAH box helicase
YPA_1900	PF00271	Helicase conserved C-terminal domain
YPA_1900	PF02559	CarD-like/TRCF domain
YPA_1900	PF03461	TRCF domain
YPA_1901	PF05433	YPA_1901
YPA_1902	PF00872	YPA_1902
YPA_1905	PF07992	Pyridine nucleotide-disulphide oxidoreductase
YPA_1906	PF05728	Uncharacterised protein family (UPF0227)
YPA_1907	PF00933	Glycosyl hydrolase family 3 N terminal domain
YPA_1908	PF01636	Phosphotransferase enzyme family
YPA_1909	PF13036	Protein of unknown function (DUF3897)
YPA_1910	PF07233	Protein of unknown function (DUF1425)
YPA_1911	PF01230	HIT domain
YPA_1912	PF08501	Shikimate dehydrogenase substrate binding domain
YPA_1914	PF01695	IstB-like ATP binding protein
YPA_1915	PF00665	Integrase core domain
YPA_1915	PF02796	Helix-turn-helix domain of resolvase
YPA_1916	PF01797	Transposase IS200 like
YPA_1917	PF00367	phosphotransferase system, EIIB
YPA_1917	PF02378	Phosphotransferase system, EIIC
YPA_1918	PF01026	TatD related DNase
YPA_1919	PF09115	DNA polymerase III, delta subunit, C terminal
YPA_1919	PF13177	DNA polymerase III, delta subunit
YPA_1920	PF02223	Thymidylate kinase
YPA_1921	PF02618	YceG-like family
YPA_1922	PF01063	Aminotransferase class IV
YPA_1923	PF01797	Transposase IS200 like
YPA_1924	PF00109	Beta-ketoacyl synthase, N-terminal domain
YPA_1924	PF02801	Beta-ketoacyl synthase, C-terminal domain
YPA_1925	PF00550	Phosphopantetheine attachment site
YPA_1926	PF13561	Enoyl-(Acyl carrier protein) reductase
YPA_1927	PF00698	Acyl transferase domain
YPA_1928	PF08541	3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal
YPA_1928	PF08545	3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III
YPA_1929	PF02504	Fatty acid synthesis protein
YPA_1930	PF01783	Ribosomal L32p protein family
YPA_1931	PF02620	YPA_1931
YPA_1932	PF02545	Maf-like protein
YPA_1933	PF01797	Transposase IS200 like
YPA_1934	PF00849	RNA pseudouridylate synthase
YPA_1934	PF01479	S4 domain
YPA_1935	PF00575	S1 RNA binding domain
YPA_1935	PF10150	Ribonuclease E/G family
YPA_1935	PF12111	Polyribonucleotide phosphorylase C terminal
YPA_1937	PF00872	YPA_1937
YPA_1938	PF13333	YPA_1938
YPA_1939	PF03992	Antibiotic biosynthesis monooxygenase
YPA_1940	PF01979	Amidohydrolase family
YPA_1941	PF06183	DinI-like family
YPA_1942	PF13991	YPA_1942
YPA_1943	PF00872	YPA_1943
YPA_1944	PF00872	YPA_1944
YPA_1945	PF01266	FAD dependent oxidoreductase
YPA_1946	PF00872	YPA_1946
YPA_1947	PF00196	Bacterial regulatory proteins, luxR family
YPA_1948	PF01594	YPA_1948
YPA_1949	PF00581	Rhodanese-like domain
YPA_1949	PF12368	YPA_1949
YPA_1953	PF00892	EamA-like transporter family
YPA_1954	PF00765	Autoinducer synthetase
YPA_1955	PF00196	Bacterial regulatory proteins, luxR family
YPA_1955	PF03472	Autoinducer binding domain
YPA_1956	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
YPA_1956	PF03466	LysR substrate binding domain
YPA_1957	PF00083	Sugar (and other) transporter
YPA_1958	PF08714	Formaldehyde-activating enzyme (Fae)
YPA_1959	PF00248	Aldo/keto reductase family
YPA_1960	PF09618	CRISPR-associated protein (Cas_Csy4)
YPA_1961	PF09615	YPA_1961
YPA_1962	PF09614	YPA_1962
YPA_1963	PF09611	YPA_1963
YPA_1965	PF01867	CRISPR associated protein Cas1
YPA_1966	PF00924	Mechanosensitive ion channel
YPA_1969	PF08950	Protein of unknown function (DUF1861)
YPA_1970	PF04041	Domain of unknown function (DUF377)
YPA_1971	PF00528	Binding-protein-dependent transport system inner membrane component
YPA_1972	PF00528	Binding-protein-dependent transport system inner membrane component
YPA_1973	PF13416	Bacterial extracellular solute-binding protein
YPA_1974	PF00356	Bacterial regulatory proteins, lacI family
YPA_1974	PF13377	Periplasmic binding protein-like domain
YPA_1975	PF00408	Phosphoglucomutase/phosphomannomutase, C-terminal domain
YPA_1975	PF02878	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I
YPA_1975	PF02879	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II
YPA_1975	PF02880	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III
YPA_1976	PF00005	ABC transporter
YPA_1976	PF08402	TOBE domain
YPA_1980	PF14106	YPA_1980
YPA_1983	PF04829	YPA_1983
YPA_1985	PF10004	YPA_1985
YPA_1986	PF04829	YPA_1986
YPA_1986	PF05594	YPA_1986
YPA_1986	PF05860	haemagglutination activity domain
YPA_1986	PF13332	YPA_1986
YPA_1987	PF03865	Haemolysin secretion/activation protein ShlB/FhaC/HecB
YPA_1987	PF08479	POTRA domain, ShlB-type
YPA_1987	PF17287	YPA_1987
YPA_1988	PF00111	2Fe-2S iron-sulfur cluster binding domain
YPA_1988	PF00175	Oxidoreductase NAD-binding domain
YPA_1988	PF00970	Oxidoreductase FAD-binding domain
YPA_1989	PF00355	Rieske [2Fe-2S] domain
YPA_1989	PF00848	Ring hydroxylating alpha subunit (catalytic domain)
YPA_1990	PF02028	BCCT family transporter
YPA_1991	PF00180	Isocitrate/isopropylmalate dehydrogenase
YPA_1992	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
YPA_1992	PF03466	LysR substrate binding domain
YPA_1993	PF00356	Bacterial regulatory proteins, lacI family
YPA_1993	PF13407	Periplasmic binding protein domain
YPA_1994	PF02653	YPA_1994
YPA_1995	PF00005	ABC transporter
YPA_1996	PF13407	Periplasmic binding protein domain
YPA_1997	PF00107	Zinc-binding dehydrogenase
YPA_1999	PF00892	EamA-like transporter family
YPA_2000	PF00583	Acetyltransferase (GNAT) family
YPA_2001	PF13649	Methyltransferase domain
YPA_2002	PF00210	Ferritin-like domain
YPA_2003	PF02698	DUF218 domain
YPA_2004	PF00497	Bacterial extracellular solute-binding proteins, family 3
YPA_2005	PF00528	Binding-protein-dependent transport system inner membrane component
YPA_2006	PF00005	ABC transporter
YPA_2007	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
YPA_2007	PF08448	PAS fold
YPA_2007	PF13426	PAS domain
YPA_2008	PF00665	Integrase core domain
YPA_2008	PF02796	Helix-turn-helix domain of resolvase
YPA_2009	PF01695	IstB-like ATP binding protein
YPA_2011	PF05971	Protein of unknown function (DUF890)
YPA_2012	PF07338	Protein of unknown function (DUF1471)
YPA_2014	PF00591	Glycosyl transferase family, a/b domain
YPA_2014	PF02885	Glycosyl transferase family, helical bundle domain
YPA_2015	PF00501	AMP-binding enzyme
YPA_2016	PF13378	Enolase C-terminal domain-like
YPA_2017	PF00378	Enoyl-CoA hydratase/isomerase family
YPA_2018	PF12697	Alpha/beta hydrolase family
YPA_2019	PF02775	Thiamine pyrophosphate enzyme, C-terminal TPP binding domain
YPA_2019	PF02776	Thiamine pyrophosphate enzyme, N-terminal TPP binding domain
YPA_2019	PF16582	YPA_2019
YPA_2020	PF00425	chorismate binding enzyme
YPA_2022	PF05957	YPA_2022
YPA_2025	PF00920	Dehydratase family
YPA_2026	PF03928	Domain of unknown function (DUF336)
YPA_2027	PF07690	Major Facilitator Superfamily
YPA_2028	PF00389	D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
YPA_2028	PF02826	D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
YPA_2029	PF00356	Bacterial regulatory proteins, lacI family
YPA_2029	PF00532	Periplasmic binding proteins and sugar binding domain of LacI family
YPA_2030	PF02638	YPA_2030
YPA_2031	PF00106	short chain dehydrogenase
YPA_2032	PF01202	Shikimate kinase
YPA_2033	PF04074	Domain of unknown function (DUF386)
YPA_2035	PF00361	NADH-Ubiquinone/plastoquinone (complex I), various chains
YPA_2036	PF00361	NADH-Ubiquinone/plastoquinone (complex I), various chains
YPA_2037	PF00361	NADH-Ubiquinone/plastoquinone (complex I), various chains
YPA_2037	PF00662	NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus
YPA_2038	PF00420	NADH-ubiquinone/plastoquinone oxidoreductase chain 4L
YPA_2039	PF00499	NADH-ubiquinone/plastoquinone oxidoreductase chain 6
YPA_2040	PF12838	4Fe-4S dicluster domain
YPA_2041	PF00146	NADH dehydrogenase
YPA_2042	PF00384	Molybdopterin oxidoreductase
YPA_2042	PF01568	Molydopterin dinucleotide binding domain
YPA_2042	PF04879	Molybdopterin oxidoreductase Fe4S4 domain
YPA_2042	PF10588	NADH-ubiquinone oxidoreductase-G iron-sulfur binding region
YPA_2042	PF13510	2Fe-2S iron-sulfur cluster binding domain
YPA_2043	PF01512	Respiratory-chain NADH dehydrogenase 51 Kd subunit
YPA_2043	PF10589	NADH-ubiquinone oxidoreductase-F iron-sulfur binding region
YPA_2044	PF01257	Thioredoxin-like [2Fe-2S] ferredoxin
YPA_2045	PF00329	Respiratory-chain NADH dehydrogenase, 30 Kd subunit
YPA_2045	PF00346	Respiratory-chain NADH dehydrogenase, 49 Kd subunit
YPA_2046	PF01058	NADH ubiquinone oxidoreductase, 20 Kd subunit
YPA_2047	PF00507	NADH-ubiquinone/plastoquinone oxidoreductase, chain 3
YPA_2048	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
YPA_2048	PF03466	LysR substrate binding domain
YPA_2049	PF00155	Aminotransferase class I and II
YPA_2050	PF13023	HD domain
YPA_2051	PF02080	TrkA-C domain
YPA_2051	PF03600	Citrate transporter
YPA_2052	PF13419	Haloacid dehalogenase-like hydrolase
YPA_2053	PF03887	YfbU domain
YPA_2054	PF04217	YPA_2054
YPA_2055	PF00871	Acetokinase family
YPA_2056	PF01515	Phosphate acetyl/butaryl transferase
YPA_2056	PF07085	DRTGG domain
YPA_2056	PF13500	AAA domain
YPA_2057	PF00356	Bacterial regulatory proteins, lacI family
YPA_2057	PF13377	Periplasmic binding protein-like domain
YPA_2058	PF00359	Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2
YPA_2059	PF02302	PTS system, Lactose/Cellobiose specific IIB subunit
YPA_2060	PF03611	YPA_2060
YPA_2061	PF00293	NUDIX domain
YPA_2062	PF12850	Calcineurin-like phosphoesterase superfamily domain
YPA_2063	PF00563	EAL domain
YPA_2064	PF01370	NAD dependent epimerase/dehydratase family
YPA_2064	PF08338	Domain of unknown function (DUF1731)
YPA_2065	PF00005	ABC transporter
YPA_2066	PF00528	Binding-protein-dependent transport system inner membrane component
YPA_2067	PF00528	Binding-protein-dependent transport system inner membrane component
YPA_2068	PF00497	Bacterial extracellular solute-binding proteins, family 3
YPA_2069	PF00665	Integrase core domain
YPA_2069	PF02796	Helix-turn-helix domain of resolvase
YPA_2070	PF01695	IstB-like ATP binding protein
YPA_2071	PF02441	Flavoprotein
YPA_2072	PF00156	Phosphoribosyl transferase domain
YPA_2072	PF13522	Glutamine amidotransferase domain
YPA_2073	PF02674	YPA_2073
YPA_2074	PF05036	Sporulation related domain
YPA_2075	PF02875	Mur ligase family, glutamate ligase domain
YPA_2075	PF08245	Mur ligase middle domain
YPA_2076	PF01039	Carboxyl transferase domain
YPA_2077	PF09335	YPA_2077
YPA_2078	PF01416	tRNA pseudouridine synthase
YPA_2079	PF01118	Semialdehyde dehydrogenase, NAD binding domain
YPA_2079	PF02774	Semialdehyde dehydrogenase, dimerisation domain
YPA_2080	PF00389	D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
YPA_2080	PF02826	D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
YPA_2080	PF11890	Domain of unknown function (DUF3410)
YPA_2081	PF02311	AraC-like ligand binding domain
YPA_2081	PF12833	Helix-turn-helix domain
YPA_2082	PF00892	EamA-like transporter family
YPA_2084	PF00419	Fimbrial protein
YPA_2085	PF01177	Asp/Glu/Hydantoin racemase
YPA_2086	PF00109	Beta-ketoacyl synthase, N-terminal domain
YPA_2086	PF02801	Beta-ketoacyl synthase, C-terminal domain
YPA_2087	PF01266	FAD dependent oxidoreductase
YPA_2087	PF05430	S-adenosyl-L-methionine-dependent methyltransferase
YPA_2088	PF08891	YPA_2088
YPA_2089	PF04315	YPA_2089
YPA_2090	PF01925	YPA_2090
YPA_2091	PF03411	Penicillin-insensitive murein endopeptidase
YPA_2092	PF01264	Chorismate synthase
YPA_2093	PF05175	Methyltransferase small domain
YPA_2094	PF01713	Smr domain
YPA_2096	PF00300	Histidine phosphatase superfamily (branch 1)
YPA_2097	PF00378	Enoyl-CoA hydratase/isomerase family
YPA_2097	PF00725	3-hydroxyacyl-CoA dehydrogenase, C-terminal domain
YPA_2097	PF02737	3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
YPA_2098	PF00108	Thiolase, N-terminal domain
YPA_2098	PF02803	Thiolase, C-terminal domain
YPA_2099	PF04175	Protein of unknown function (DUF406)
YPA_2100	PF03349	Outer membrane protein transport protein (OMPP1/FadL/TodX)
YPA_2101	PF04333	YPA_2101
YPA_2102	PF14559	Tetratricopeptide repeat
YPA_2103	PF03918	Cytochrome C biogenesis protein
YPA_2104	PF08534	Redoxin
YPA_2105	PF01578	YPA_2105
YPA_2105	PF16327	YPA_2105
YPA_2106	PF03100	CcmE
YPA_2107	PF04995	YPA_2107
YPA_2108	PF01578	YPA_2108
YPA_2109	PF03379	YPA_2109
YPA_2110	PF00005	ABC transporter
YPA_2112	PF04011	LemA family
YPA_2113	PF09972	YPA_2113
YPA_2114	PF03831	PhnA protein
YPA_2114	PF08274	PhnA Zinc-Ribbon
YPA_2116	PF04965	Gene 25-like lysozyme
YPA_2117	PF07024	ImpE protein
YPA_2119	PF05488	PAAR motif
YPA_2120	PF05954	Phage late control gene D protein (GPD)
YPA_2121	PF06744	YPA_2121
YPA_2121	PF06761	YPA_2121
YPA_2121	PF14331	YPA_2121
YPA_2122	PF00691	OmpA family
YPA_2122	PF09850	Uncharacterized protein conserved in bacteria (DUF2077)
YPA_2123	PF01695	IstB-like ATP binding protein
YPA_2124	PF00665	Integrase core domain
YPA_2124	PF02796	Helix-turn-helix domain of resolvase
YPA_2125	PF09850	Uncharacterized protein conserved in bacteria (DUF2077)
YPA_2126	PF05936	YPA_2126
YPA_2127	PF12790	Type VI secretion lipoprotein
YPA_2128	PF05638	Protein of unknown function (DUF796)
YPA_2129	PF05943	YPA_2129
YPA_2130	PF05591	YPA_2130
YPA_2131	PF00419	Fimbrial protein
YPA_2132	PF00577	Outer membrane usher protein
YPA_2132	PF13953	PapC C-terminal domain
YPA_2133	PF00872	YPA_2133
YPA_2134	PF00577	Outer membrane usher protein
YPA_2134	PF13954	PapC N-terminal domain
YPA_2135	PF00345	Pili and flagellar-assembly chaperone, PapD N-terminal domain
YPA_2135	PF02753	Pili assembly chaperone PapD, C-terminal domain
YPA_2136	PF16970	YPA_2136
YPA_2137	PF00004	ATPase family associated with various cellular activities (AAA)
YPA_2137	PF02861	Clp amino terminal domain
YPA_2137	PF07724	AAA domain (Cdc48 subfamily)
YPA_2137	PF10431	C-terminal, D2-small domain, of ClpB protein
YPA_2138	PF05947	YPA_2138
YPA_2139	PF06996	YPA_2139
YPA_2140	PF06812	YPA_2140
YPA_2141	PF00419	Fimbrial protein
YPA_2142	PF11397	YPA_2142
YPA_2144	PF00691	OmpA family
YPA_2145	PF08786	Domain of unknown function (DUF1795)
YPA_2146	PF00196	Bacterial regulatory proteins, luxR family
YPA_2147	PF13406	Transglycosylase SLT domain
YPA_2148	PF13343	Bacterial extracellular solute-binding protein
YPA_2149	PF00528	Binding-protein-dependent transport system inner membrane component
YPA_2150	PF00005	ABC transporter
YPA_2151	PF09900	YPA_2151
YPA_2152	PF05638	Protein of unknown function (DUF796)
YPA_2153	PF13988	YPA_2153
YPA_2154	PF00384	Molybdopterin oxidoreductase
YPA_2154	PF01568	Molydopterin dinucleotide binding domain
YPA_2154	PF04879	Molybdopterin oxidoreductase Fe4S4 domain
YPA_2155	PF12800	4Fe-4S binding domain
YPA_2155	PF13247	4Fe-4S dicluster domain
YPA_2156	PF04976	YPA_2156
YPA_2157	PF02613	Nitrate reductase delta subunit
YPA_2158	PF00037	4Fe-4S binding domain
YPA_2158	PF12838	4Fe-4S dicluster domain
YPA_2159	PF05643	Putative bacterial lipoprotein (DUF799)
YPA_2160	PF16068	YPA_2160
YPA_2161	PF03783	Curli production assembly/transport component CsgG
YPA_2162	PF15970	YPA_2162
YPA_2163	PF01292	Prokaryotic cytochrome b561
YPA_2164	PF00155	Aminotransferase class I and II
YPA_2165	PF07350	Protein of unknown function (DUF1479)
YPA_2166	PF02685	Glucokinase
YPA_2167	PF05232	YPA_2167
YPA_2168	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
YPA_2168	PF03466	LysR substrate binding domain
YPA_2169	PF00248	Aldo/keto reductase family
YPA_2170	PF10697	YPA_2170
YPA_2171	PF01566	YPA_2171
YPA_2172	PF01773	Na+ dependent nucleoside transporter N-terminus
YPA_2172	PF07662	Na+ dependent nucleoside transporter C-terminus
YPA_2172	PF07670	Nucleoside recognition
YPA_2173	PF00749	tRNA synthetases class I (E and Q), catalytic domain
YPA_2174	PF01797	Transposase IS200 like
YPA_2175	PF06042	Bacterial protein of unknown function (DUF925)
YPA_2176	PF14282	YPA_2176
YPA_2177	PF12843	YPA_2177
YPA_2178	PF00533	BRCA1 C Terminus (BRCT) domain
YPA_2178	PF01653	NAD-dependent DNA ligase adenylation domain
YPA_2178	PF03119	NAD-dependent DNA ligase C4 zinc finger domain
YPA_2178	PF03120	NAD-dependent DNA ligase OB-fold domain
YPA_2178	PF12826	Helix-hairpin-helix motif
YPA_2178	PF14520	Helix-hairpin-helix domain
YPA_2179	PF04354	ZipA, C-terminal FtsZ-binding domain
YPA_2180	PF07264	Etoposide-induced protein 2
YPA_2182	PF00291	Pyridoxal-phosphate dependent enzyme
YPA_2183	PF00381	PTS HPr component phosphorylation site
YPA_2184	PF00391	PEP-utilising enzyme, mobile domain
YPA_2184	PF02896	PEP-utilising enzyme, TIM barrel domain
YPA_2184	PF05524	PEP-utilising enzyme, N-terminal
YPA_2185	PF00358	phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1
YPA_2186	PF01797	Transposase IS200 like
YPA_2187	PF00512	His Kinase A (phospho-acceptor) domain
YPA_2187	PF00672	HAMP domain
YPA_2187	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
YPA_2188	PF00072	Response regulator receiver domain
YPA_2188	PF00486	Transcriptional regulatory protein, C terminal
YPA_2189	PF16576	YPA_2189
YPA_2190	PF00005	ABC transporter
YPA_2190	PF02687	YPA_2190
YPA_2190	PF12704	MacB-like periplasmic core domain
YPA_2191	PF00581	Rhodanese-like domain
YPA_2191	PF02852	Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain
YPA_2191	PF07992	Pyridine nucleotide-disulphide oxidoreductase
YPA_2193	PF00557	Metallopeptidase family M24
YPA_2193	PF01321	Creatinase/Prolidase N-terminal domain
YPA_2194	PF01321	Creatinase/Prolidase N-terminal domain
YPA_2195	PF00155	Aminotransferase class I and II
YPA_2196	PF00092	von Willebrand factor type A domain
YPA_2197	PF00512	His Kinase A (phospho-acceptor) domain
YPA_2197	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
YPA_2198	PF00072	Response regulator receiver domain
YPA_2198	PF00486	Transcriptional regulatory protein, C terminal
YPA_2200	PF00291	Pyridoxal-phosphate dependent enzyme
YPA_2201	PF00005	ABC transporter
YPA_2202	PF00528	Binding-protein-dependent transport system inner membrane component
YPA_2203	PF00528	Binding-protein-dependent transport system inner membrane component
YPA_2204	PF13531	Bacterial extracellular solute-binding protein
YPA_2205	PF07690	Major Facilitator Superfamily
YPA_2206	PF01380	SIS domain
YPA_2206	PF01418	Helix-turn-helix domain, rpiR family
YPA_2207	PF04074	Domain of unknown function (DUF386)
YPA_2208	PF00480	ROK family
YPA_2209	PF12468	Type III secretion system leucine rich repeat protein
YPA_2209	PF13855	Leucine rich repeat
YPA_2211	PF04131	Putative N-acetylmannosamine-6-phosphate epimerase
YPA_2212	PF00701	Dihydrodipicolinate synthetase family
YPA_2213	PF04261	Dyp-type peroxidase family
YPA_2214	PF06572	Protein of unknown function (DUF1131)
YPA_2215	PF04076	Bacterial OB fold (BOF) protein
YPA_2216	PF03212	Pertactin
YPA_2216	PF03797	Autotransporter beta-domain
YPA_2219	PF00583	Acetyltransferase (GNAT) family
YPA_2220	PF01218	Coproporphyrinogen III oxidase
YPA_2221	PF02639	YPA_2221
YPA_2222	PF00390	Malic enzyme, N-terminal domain
YPA_2222	PF01515	Phosphate acetyl/butaryl transferase
YPA_2222	PF03949	Malic enzyme, NAD binding domain
YPA_2223	PF00293	NUDIX domain
YPA_2224	PF01695	IstB-like ATP binding protein
YPA_2225	PF00665	Integrase core domain
YPA_2225	PF02796	Helix-turn-helix domain of resolvase
YPA_2227	PF03264	NapC/NirT cytochrome c family, N-terminal region
YPA_2228	PF03892	Nitrate reductase cytochrome c-type subunit (NapB)
YPA_2229	PF00384	Molybdopterin oxidoreductase
YPA_2229	PF01568	Molydopterin dinucleotide binding domain
YPA_2229	PF04879	Molybdopterin oxidoreductase Fe4S4 domain
YPA_2229	PF10518	TAT (twin-arginine translocation) pathway signal sequence
YPA_2230	PF03927	NapD protein
YPA_2231	PF12838	4Fe-4S dicluster domain
YPA_2231	PF13187	4Fe-4S dicluster domain
YPA_2232	PF00072	Response regulator receiver domain
YPA_2232	PF00196	Bacterial regulatory proteins, luxR family
YPA_2233	PF09904	Winged helix-turn helix
YPA_2234	PF00873	AcrB/AcrD/AcrF family
YPA_2236	PF04307	YPA_2236
YPA_2237	PF04055	Radical SAM superfamily
YPA_2237	PF13353	4Fe-4S single cluster domain
YPA_2238	PF00884	Sulfatase
YPA_2239	PF00005	ABC transporter
YPA_2240	PF00528	Binding-protein-dependent transport system inner membrane component
YPA_2241	PF13416	Bacterial extracellular solute-binding protein
YPA_2242	PF12688	Tetratrico peptide repeat
YPA_2243	PF03960	ArsC family
YPA_2244	PF01546	Peptidase family M20/M25/M40
YPA_2244	PF07687	Peptidase dimerisation domain
YPA_2245	PF02557	D-alanyl-D-alanine carboxypeptidase
YPA_2246	PF13980	YPA_2246
YPA_2247	PF05127	Helicase
YPA_2247	PF08351	Domain of unknown function (DUF1726)
YPA_2247	PF13718	GNAT acetyltransferase 2
YPA_2247	PF17176	YPA_2247
YPA_2248	PF04284	YPA_2248
YPA_2249	PF04228	YPA_2249
YPA_2250	PF01259	SAICAR synthetase
YPA_2251	PF01797	Transposase IS200 like
YPA_2252	PF06804	NlpB/DapX lipoprotein
YPA_2253	PF00701	Dihydrodipicolinate synthetase family
YPA_2254	PF13740	ACT domain
YPA_2255	PF00578	AhpC/TSA family
YPA_2259	PF01594	YPA_2259
YPA_2260	PF01435	Peptidase family M48
YPA_2260	PF07720	Tetratricopeptide repeat
YPA_2260	PF14559	Tetratricopeptide repeat
YPA_2261	PF03960	ArsC family
YPA_2262	PF00308	Bacterial dnaA  protein
YPA_2263	PF01797	Transposase IS200 like
YPA_2264	PF14681	Uracil phosphoribosyltransferase
YPA_2265	PF00586	AIR synthase related protein, N-terminal domain
YPA_2265	PF02769	AIR synthase related protein, C-terminal domain
YPA_2266	PF00551	Formyl transferase
YPA_2267	PF13302	Acetyltransferase (GNAT) domain
YPA_2269	PF03692	YPA_2269
YPA_2270	PF00005	ABC transporter
YPA_2271	PF00528	Binding-protein-dependent transport system inner membrane component
YPA_2272	PF00528	Binding-protein-dependent transport system inner membrane component
YPA_2273	PF02503	Polyphosphate kinase middle domain
YPA_2273	PF13089	Polyphosphate kinase N-terminal domain
YPA_2273	PF13090	Polyphosphate kinase C-terminal domain
YPA_2274	PF02541	Ppx/GppA phosphatase family
YPA_2275	PF00571	CBS domain
YPA_2275	PF01769	Divalent cation transporter
YPA_2275	PF03448	MgtE intracellular N domain
YPA_2276	PF00012	Hsp70 protein
YPA_2278	PF00665	Integrase core domain
YPA_2278	PF02796	Helix-turn-helix domain of resolvase
YPA_2279	PF01695	IstB-like ATP binding protein
YPA_2280	PF00528	Binding-protein-dependent transport system inner membrane component
YPA_2281	PF00528	Binding-protein-dependent transport system inner membrane component
YPA_2282	PF13416	Bacterial extracellular solute-binding protein
YPA_2283	PF00202	Aminotransferase class-III
YPA_2284	PF00155	Aminotransferase class I and II
YPA_2284	PF00392	Bacterial regulatory proteins, gntR family
YPA_2285	PF00005	ABC transporter
YPA_2285	PF08402	TOBE domain
YPA_2286	PF13437	HlyD family secretion protein
YPA_2286	PF13533	Biotin-lipoyl like
YPA_2287	PF00873	AcrB/AcrD/AcrF family
YPA_2288	PF00873	AcrB/AcrD/AcrF family
YPA_2289	PF07690	Major Facilitator Superfamily
YPA_2290	PF00512	His Kinase A (phospho-acceptor) domain
YPA_2290	PF00672	HAMP domain
YPA_2291	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
YPA_2292	PF00072	Response regulator receiver domain
YPA_2292	PF00486	Transcriptional regulatory protein, C terminal
YPA_2293	PF07411	Domain of unknown function (DUF1508)
YPA_2294	PF01136	YPA_2294
YPA_2294	PF16325	YPA_2294
YPA_2295	PF00781	Diacylglycerol kinase catalytic domain
YPA_2296	PF08816	Inhibitor of vertebrate lysozyme (Ivy)
YPA_2299	PF08543	Phosphomethylpyrimidine kinase
YPA_2300	PF06092	YPA_2300
YPA_2302	PF00872	YPA_2302
YPA_2304	PF06836	YPA_2304
YPA_2305	PF06836	YPA_2305
YPA_2306	PF06836	YPA_2306
YPA_2307	PF06836	YPA_2307
YPA_2308	PF05638	Protein of unknown function (DUF796)
YPA_2309	PF01797	Transposase IS200 like
YPA_2310	PF01797	Transposase IS200 like
YPA_2311	PF00117	Glutamine amidotransferase class-I
YPA_2311	PF00958	GMP synthase C terminal domain
YPA_2311	PF02540	NAD synthase
YPA_2312	PF00478	IMP dehydrogenase / GMP reductase domain
YPA_2312	PF00571	CBS domain
YPA_2313	PF02601	YPA_2313
YPA_2313	PF13742	YPA_2313
YPA_2314	PF03547	YPA_2314
YPA_2315	PF01926	50S ribosome-binding GTPase
YPA_2315	PF14714	KH-domain-like of EngA bacterial GTPase enzymes, C-terminal
YPA_2316	PF13360	PQQ-like domain
YPA_2317	PF09976	Tetratricopeptide repeat
YPA_2318	PF03129	Anticodon binding domain
YPA_2318	PF13393	Histidyl-tRNA synthetase
YPA_2319	PF04551	GcpE protein
YPA_2320	PF13413	Helix-turn-helix domain
YPA_2320	PF13464	YPA_2320
YPA_2321	PF13181	Tetratricopeptide repeat
YPA_2321	PF13431	Tetratricopeptide repeat
YPA_2322	PF04055	Radical SAM superfamily
YPA_2323	PF00334	Nucleoside diphosphate kinase
YPA_2324	PF00030	Beta/Gamma crystallin
YPA_2324	PF08964	Beta/Gamma crystallin
YPA_2324	PF09101	Exotoxin A binding
YPA_2326	PF03212	Pertactin
YPA_2326	PF03797	Autotransporter beta-domain
YPA_2327	PF03212	Pertactin
YPA_2327	PF03797	Autotransporter beta-domain
YPA_2328	PF03797	Autotransporter beta-domain
YPA_2329	PF07179	YPA_2329
YPA_2329	PF14581	YPA_2329
YPA_2330	PF00883	Cytosol aminopeptidase family, catalytic domain
YPA_2330	PF12404	YPA_2330
YPA_2331	PF04384	Iron-sulphur cluster assembly
YPA_2332	PF00111	2Fe-2S iron-sulfur cluster binding domain
YPA_2333	PF00012	Hsp70 protein
YPA_2334	PF00226	DnaJ domain
YPA_2334	PF07743	HSCB C-terminal oligomerisation domain
YPA_2335	PF01521	Iron-sulphur cluster biosynthesis
YPA_2336	PF01592	NifU-like N terminal domain
YPA_2337	PF00266	Aminotransferase class-V
YPA_2338	PF02082	Transcriptional regulator
YPA_2339	PF00588	SpoU rRNA Methylase family
YPA_2340	PF00459	Inositol monophosphatase family
YPA_2341	PF03824	YPA_2341
YPA_2342	PF06226	YPA_2342
YPA_2343	PF00874	PRD domain
YPA_2344	PF12832	MFS_1 like family
YPA_2345	PF13505	Outer membrane protein beta-barrel domain
YPA_2347	PF00464	Serine hydroxymethyltransferase
YPA_2348	PF00042	Globin
YPA_2348	PF00175	Oxidoreductase NAD-binding domain
YPA_2348	PF00970	Oxidoreductase FAD-binding domain
YPA_2349	PF14502	Helix-turn-helix domain
YPA_2349	PF14503	YhfZ C-terminal domain
YPA_2350	PF14503	YhfZ C-terminal domain
YPA_2351	PF00543	Nitrogen regulatory protein P-II
YPA_2352	PF00795	Carbon-nitrogen hydrolase
YPA_2352	PF02540	NAD synthase
YPA_2353	PF00072	Response regulator receiver domain
YPA_2353	PF00158	Sigma-54 interaction domain
YPA_2354	PF13942	YPA_2354
YPA_2355	PF00512	His Kinase A (phospho-acceptor) domain
YPA_2355	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
YPA_2356	PF01797	Transposase IS200 like
YPA_2360	PF02769	AIR synthase related protein, C-terminal domain
YPA_2360	PF13507	CobB/CobQ-like glutamine amidotransferase domain
YPA_2361	PF00497	Bacterial extracellular solute-binding proteins, family 3
YPA_2361	PF01464	Transglycosylase SLT domain
YPA_2362	PF14437	YPA_2362
YPA_2363	PF12710	haloacid dehalogenase-like hydrolase
YPA_2364	PF01380	SIS domain
YPA_2365	PF01380	SIS domain
YPA_2365	PF01418	Helix-turn-helix domain, rpiR family
YPA_2366	PF12838	4Fe-4S dicluster domain
YPA_2367	PF01797	Transposase IS200 like
YPA_2368	PF01648	4'-phosphopantetheinyl transferase superfamily
YPA_2369	PF03740	Pyridoxal phosphate biosynthesis protein PdxJ
YPA_2370	PF01695	IstB-like ATP binding protein
YPA_2371	PF00665	Integrase core domain
YPA_2371	PF02796	Helix-turn-helix domain of resolvase
YPA_2372	PF01522	Polysaccharide deacetylase
YPA_2373	PF04069	Substrate binding domain of ABC-type glycine betaine transport system
YPA_2374	PF00528	Binding-protein-dependent transport system inner membrane component
YPA_2375	PF00005	ABC transporter
YPA_2375	PF00571	CBS domain
YPA_2376	PF00268	Ribonucleotide reductase, small chain
YPA_2377	PF00317	Ribonucleotide reductase, all-alpha domain
YPA_2377	PF02867	Ribonucleotide reductase, barrel domain
YPA_2377	PF08343	Ribonucleotide reductase N-terminal
YPA_2378	PF07972	NrdI Flavodoxin like
YPA_2379	PF00462	Glutaredoxin
YPA_2380	PF06392	YPA_2380
YPA_2381	PF09400	Protein of unknown function (DUF2002)
YPA_2382	PF00872	YPA_2382
YPA_2383	PF09400	Protein of unknown function (DUF2002)
YPA_2384	PF06711	YPA_2384
YPA_2385	PF04899	YPA_2385
YPA_2386	PF00313	'Cold-shock' DNA-binding domain
YPA_2387	PF00496	Bacterial extracellular solute-binding proteins, family 5 Middle
YPA_2388	PF00528	Binding-protein-dependent transport system inner membrane component
YPA_2389	PF00528	Binding-protein-dependent transport system inner membrane component
YPA_2390	PF00005	ABC transporter
YPA_2391	PF00005	ABC transporter
YPA_2392	PF00547	Urease, gamma subunit
YPA_2393	PF00699	Urease beta subunit
YPA_2394	PF00449	Urease alpha-subunit, N-terminal domain
YPA_2394	PF01979	Amidohydrolase family
YPA_2395	PF02814	UreE urease accessory protein, N-terminal domain
YPA_2395	PF05194	UreE urease accessory protein, C-terminal domain
YPA_2396	PF01730	UreF
YPA_2397	PF02492	CobW/HypB/UreG, nucleotide-binding domain
YPA_2398	PF01774	UreD urease accessory protein
YPA_2400	PF03253	Urea transporter
YPA_2401	PF03824	YPA_2401
YPA_2402	PF06411	HdeA/HdeB family
YPA_2403	PF02254	TrkA-N domain
YPA_2403	PF07885	Ion channel
YPA_2404	PF02537	YPA_2404
YPA_2405	PF02537	YPA_2405
YPA_2407	PF02302	PTS system, Lactose/Cellobiose specific IIB subunit
YPA_2408	PF02378	Phosphotransferase system, EIIC
YPA_2409	PF02255	PTS system, Lactose/Cellobiose specific IIA subunit
YPA_2410	PF07883	Cupin domain
YPA_2410	PF12833	Helix-turn-helix domain
YPA_2411	PF04794	YdjC-like protein
YPA_2413	PF03925	SeqA protein
YPA_2413	PF17206	YPA_2413
YPA_2414	PF00408	Phosphoglucomutase/phosphomannomutase, C-terminal domain
YPA_2414	PF02878	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I
YPA_2414	PF02879	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II
YPA_2414	PF02880	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III
YPA_2417	PF00892	EamA-like transporter family
YPA_2418	PF00072	Response regulator receiver domain
YPA_2418	PF00486	Transcriptional regulatory protein, C terminal
YPA_2419	PF00512	His Kinase A (phospho-acceptor) domain
YPA_2419	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
YPA_2419	PF02702	Osmosensitive K+ channel His kinase sensor domain
YPA_2419	PF13492	GAF domain
YPA_2419	PF13493	Domain of unknown function (DUF4118)
YPA_2420	PF02669	YPA_2420
YPA_2421	PF00122	E1-E2 ATPase
YPA_2421	PF00702	haloacid dehalogenase-like hydrolase
YPA_2422	PF03814	YPA_2422
YPA_2423	PF09604	YPA_2423
YPA_2424	PF10725	YPA_2424
YPA_2425	PF08349	YPA_2425
YPA_2426	PF00875	DNA photolyase
YPA_2426	PF03441	FAD binding domain of DNA photolyase
YPA_2427	PF02112	YPA_2427
YPA_2428	PF01784	NIF3 (NGG1p interacting factor 3)
YPA_2429	PF02682	Allophanate hydrolase subunit 1
YPA_2431	PF02626	Allophanate hydrolase subunit 2
YPA_2432	PF03746	LamB/YcsF family
YPA_2433	PF06149	YPA_2433
YPA_2434	PF06166	YPA_2434
YPA_2435	PF06166	YPA_2435
YPA_2436	PF01470	Pyroglutamyl peptidase
YPA_2437	PF03167	Uracil DNA glycosylase superfamily
YPA_2438	PF01228	Glycine radical
YPA_2439	PF11187	Protein of unknown function (DUF2974)
YPA_2442	PF00270	DEAD/DEAH box helicase
YPA_2442	PF00271	Helicase conserved C-terminal domain
YPA_2443	PF05175	Methyltransferase small domain
YPA_2444	PF00890	FAD binding domain
YPA_2444	PF02910	Fumarate reductase flavoprotein C-term
YPA_2445	PF04542	Sigma-70 region 2
YPA_2445	PF08281	Sigma-70, region 4
YPA_2446	PF03872	Anti sigma-E protein RseA, N-terminal domain
YPA_2446	PF03873	Anti sigma-E protein RseA, C-terminal domain
YPA_2447	PF03888	MucB/RseB family
YPA_2447	PF17188	YPA_2447
YPA_2448	PF04246	YPA_2448
YPA_2450	PF00009	Elongation factor Tu GTP binding domain
YPA_2450	PF00679	Elongation factor G C-terminus
YPA_2450	PF03144	Elongation factor Tu domain 2
YPA_2450	PF06421	GTP-binding protein LepA C-terminus
YPA_2451	PF00717	Peptidase S24-like
YPA_2451	PF10502	Signal peptidase, peptidase S26
YPA_2452	PF00035	Double-stranded RNA binding motif
YPA_2452	PF14622	Ribonuclease-III-like
YPA_2453	PF01926	50S ribosome-binding GTPase
YPA_2453	PF07650	KH domain
YPA_2454	PF02565	Recombination protein O C terminal
YPA_2454	PF11967	Recombination protein O N terminal
YPA_2455	PF00665	Integrase core domain
YPA_2455	PF02796	Helix-turn-helix domain of resolvase
YPA_2456	PF01695	IstB-like ATP binding protein
YPA_2457	PF13356	Domain of unknown function (DUF4102)
YPA_2458	PF01527	Transposase
YPA_2460	PF12697	Alpha/beta hydrolase family
YPA_2461	PF01402	Ribbon-helix-helix protein, copG family
YPA_2462	PF00258	Flavodoxin
YPA_2463	PF01475	Ferric uptake regulator family
YPA_2464	PF00728	Glycosyl hydrolase family 20, catalytic domain
YPA_2464	PF02838	Glycosyl hydrolase family 20, domain 2
YPA_2464	PF03174	Chitobiase/beta-hexosaminidase C-terminal domain
YPA_2465	PF03173	Putative carbohydrate binding domain
YPA_2466	PF03573	outer membrane porin, OprD family
YPA_2467	PF00749	tRNA synthetases class I (E and Q), catalytic domain
YPA_2467	PF03950	tRNA synthetases class I (E and Q), anti-codon binding domain
YPA_2468	PF01797	Transposase IS200 like
YPA_2469	PF00358	phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1
YPA_2469	PF00367	phosphotransferase system, EIIB
YPA_2469	PF02378	Phosphotransferase system, EIIC
YPA_2470	PF01182	Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase
YPA_2471	PF01979	Amidohydrolase family
YPA_2472	PF00480	ROK family
YPA_2472	PF01047	MarR family
YPA_2473	PF13242	HAD-hyrolase-like
YPA_2473	PF13344	Haloacid dehalogenase-like hydrolase
YPA_2474	PF00733	Asparagine synthase
YPA_2474	PF13537	Glutamine amidotransferase domain
YPA_2476	PF01494	FAD binding domain
YPA_2477	PF00919	Uncharacterized protein family UPF0004
YPA_2477	PF01938	TRAM domain
YPA_2477	PF04055	Radical SAM superfamily
YPA_2478	PF02562	PhoH-like protein
YPA_2479	PF02130	Uncharacterized protein family UPF0054
YPA_2480	PF00571	CBS domain
YPA_2480	PF03471	Transporter associated domain
YPA_2481	PF00795	Carbon-nitrogen hydrolase
YPA_2482	PF00497	Bacterial extracellular solute-binding proteins, family 3
YPA_2483	PF00528	Binding-protein-dependent transport system inner membrane component
YPA_2484	PF00528	Binding-protein-dependent transport system inner membrane component
YPA_2485	PF00005	ABC transporter
YPA_2486	PF07295	YPA_2486
YPA_2487	PF00133	tRNA synthetases class I (I, L, M and V)
YPA_2487	PF08264	Anticodon-binding domain of tRNA
YPA_2487	PF13603	Leucyl-tRNA synthetase, Domain 2
YPA_2488	PF04390	Lipopolysaccharide-assembly
YPA_2489	PF06144	DNA polymerase III, delta subunit
YPA_2489	PF14840	Processivity clamp loader gamma complex DNA pol III C-term
YPA_2490	PF01467	Cytidylyltransferase
YPA_2491	PF02410	Oligomerisation domain
YPA_2492	PF02590	Predicted SPOUT methyltransferase
YPA_2493	PF00905	Penicillin binding protein transpeptidase domain
YPA_2493	PF03717	Penicillin-binding Protein dimerisation domain
YPA_2494	PF01098	YPA_2494
YPA_2495	PF03330	Rare lipoprotein A (RlpA)-like double-psi beta-barrel
YPA_2495	PF05036	Sporulation related domain
YPA_2496	PF00665	Integrase core domain
YPA_2496	PF02796	Helix-turn-helix domain of resolvase
YPA_2497	PF01695	IstB-like ATP binding protein
YPA_2498	PF00768	D-alanyl-D-alanine carboxypeptidase
YPA_2498	PF07943	Penicillin-binding protein 5, C-terminal domain
YPA_2499	PF04359	Protein of unknown function (DUF493)
YPA_2500	PF03099	Biotin/lipoate A/B protein ligase family
YPA_2501	PF04055	Radical SAM superfamily
YPA_2501	PF16881	YPA_2501
YPA_2502	PF02416	mttA/Hcf106 family
YPA_2503	PF02537	YPA_2503
YPA_2504	PF00313	'Cold-shock' DNA-binding domain
YPA_2505	PF00313	'Cold-shock' DNA-binding domain
YPA_2506	PF00196	Bacterial regulatory proteins, luxR family
YPA_2509	PF08971	Glycogen synthesis protein
YPA_2510	PF03992	Antibiotic biosynthesis monooxygenase
YPA_2511	PF00005	ABC transporter
YPA_2511	PF00664	ABC transporter transmembrane region
YPA_2513	PF04962	KduI/IolB family
YPA_2514	PF01261	Xylose isomerase-like TIM barrel
YPA_2515	PF09863	Uncharacterized protein conserved in bacteria (DUF2090)
YPA_2516	PF00294	pfkB family carbohydrate kinase
YPA_2517	PF01408	Oxidoreductase family, NAD-binding Rossmann fold
YPA_2517	PF02894	Oxidoreductase family, C-terminal alpha/beta domain
YPA_2518	PF02653	YPA_2518
YPA_2519	PF00005	ABC transporter
YPA_2520	PF13407	Periplasmic binding protein domain
YPA_2521	PF02894	Oxidoreductase family, C-terminal alpha/beta domain
YPA_2522	PF01408	Oxidoreductase family, NAD-binding Rossmann fold
YPA_2523	PF00205	Thiamine pyrophosphate enzyme, central domain
YPA_2523	PF02775	Thiamine pyrophosphate enzyme, C-terminal TPP binding domain
YPA_2523	PF02776	Thiamine pyrophosphate enzyme, N-terminal TPP binding domain
YPA_2524	PF00171	Aldehyde dehydrogenase family
YPA_2525	PF01380	SIS domain
YPA_2525	PF01418	Helix-turn-helix domain, rpiR family
YPA_2527	PF07274	YPA_2527
YPA_2528	PF00207	Alpha-2-macroglobulin family
YPA_2528	PF01835	MG2 domain
YPA_2528	PF07703	Alpha-2-macroglobulin family N-terminal region
YPA_2528	PF11974	Alpha-2-macroglobulin MG1 domain
YPA_2529	PF00912	Transglycosylase
YPA_2530	PF00872	YPA_2530
YPA_2531	PF00905	Penicillin binding protein transpeptidase domain
YPA_2531	PF06832	YPA_2531
YPA_2532	PF13693	Winged helix-turn-helix DNA-binding
YPA_2535	PF06836	YPA_2535
YPA_2537	PF06836	YPA_2537
YPA_2538	PF05638	Protein of unknown function (DUF796)
YPA_2541	PF03212	Pertactin
YPA_2541	PF03797	Autotransporter beta-domain
YPA_2542	PF11459	YPA_2542
YPA_2542	PF17194	YPA_2542
YPA_2544	PF00872	YPA_2544
YPA_2546	PF09925	YPA_2546
YPA_2546	PF14351	YPA_2546
YPA_2547	PF14345	YPA_2547
YPA_2548	PF00933	Glycosyl hydrolase family 3 N terminal domain
YPA_2548	PF01915	Glycosyl hydrolase family 3 C-terminal domain
YPA_2548	PF14310	Fibronectin type III-like domain
YPA_2551	PF00248	Aldo/keto reductase family
YPA_2552	PF00248	Aldo/keto reductase family
YPA_2553	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
YPA_2553	PF03466	LysR substrate binding domain
YPA_2554	PF00665	Integrase core domain
YPA_2554	PF02796	Helix-turn-helix domain of resolvase
YPA_2555	PF01695	IstB-like ATP binding protein
YPA_2558	PF00782	Dual specificity phosphatase, catalytic domain
YPA_2558	PF14378	YPA_2558
YPA_2559	PF12146	Putative lysophospholipase
YPA_2559	PF12147	YPA_2559
YPA_2560	PF01553	Acyltransferase
YPA_2561	PF01148	Cytidylyltransferase family
YPA_2562	PF01066	CDP-alcohol phosphatidyltransferase
YPA_2565	PF00763	Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain
YPA_2565	PF02882	Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain
YPA_2566	PF13275	S4 domain
YPA_2567	PF01797	Transposase IS200 like
YPA_2568	PF01406	tRNA synthetases class I (C) catalytic domain
YPA_2568	PF09190	DALR domain
YPA_2569	PF00160	Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
YPA_2570	PF00149	Calcineurin-like phosphoesterase
YPA_2571	PF00731	AIR carboxylase
YPA_2572	PF02222	ATP-grasp domain
YPA_2573	PF02687	YPA_2573
YPA_2574	PF00005	ABC transporter
YPA_2575	PF13472	GDSL-like Lipase/Acylhydrolase family
YPA_2576	PF00106	short chain dehydrogenase
YPA_2577	PF00085	Thioredoxin
YPA_2577	PF14559	Tetratricopeptide repeat
YPA_2577	PF14561	Tetratricopeptide repeat
YPA_2578	PF01145	SPFH domain / Band 7 family
YPA_2579	PF01957	NfeD-like C-terminal, partner-binding
YPA_2580	PF13411	MerR HTH family regulatory protein
YPA_2581	PF00122	E1-E2 ATPase
YPA_2581	PF00403	Heavy-metal-associated domain
YPA_2581	PF00702	haloacid dehalogenase-like hydrolase
YPA_2582	PF01963	YPA_2582
YPA_2583	PF04073	Aminoacyl-tRNA editing domain
YPA_2585	PF02872	5'-nucleotidase, C-terminal domain
YPA_2586	PF00149	Calcineurin-like phosphoesterase
YPA_2588	PF07690	Major Facilitator Superfamily
YPA_2589	PF00999	Sodium/hydrogen exchanger family
YPA_2589	PF02254	TrkA-N domain
YPA_2590	PF00294	pfkB family carbohydrate kinase
YPA_2591	PF02706	Chain length determinant protein
YPA_2592	PF00408	Phosphoglucomutase/phosphomannomutase, C-terminal domain
YPA_2592	PF02878	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I
YPA_2592	PF02879	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II
YPA_2592	PF02880	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III
YPA_2593	PF00535	Glycosyl transferase family 2
YPA_2594	PF00483	Nucleotidyl transferase
YPA_2594	PF01050	Mannose-6-phosphate isomerase
YPA_2595	PF01370	NAD dependent epimerase/dehydratase family
YPA_2596	PF16363	YPA_2596
YPA_2597	PF16363	YPA_2597
YPA_2598	PF00534	Glycosyl transferases group 1
YPA_2598	PF13439	Glycosyltransferase Family 4
YPA_2600	PF13692	Glycosyl transferases group 1
YPA_2603	PF13450	NAD(P)-binding Rossmann-like domain
YPA_2604	PF01370	NAD dependent epimerase/dehydratase family
YPA_2605	PF01041	DegT/DnrJ/EryC1/StrS aminotransferase family
YPA_2606	PF16363	YPA_2606
YPA_2608	PF00483	Nucleotidyl transferase
YPA_2609	PF00111	2Fe-2S iron-sulfur cluster binding domain
YPA_2609	PF00175	Oxidoreductase NAD-binding domain
YPA_2609	PF00970	Oxidoreductase FAD-binding domain
YPA_2610	PF00762	Ferrochelatase
YPA_2611	PF00406	Adenylate kinase
YPA_2611	PF05191	Adenylate kinase, active site lid
YPA_2612	PF00183	Hsp90 protein
YPA_2612	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
YPA_2614	PF02132	RecR protein
YPA_2614	PF13662	Toprim domain
YPA_2615	PF02575	YbaB/EbfC DNA-binding family
YPA_2616	PF12168	YPA_2616
YPA_2616	PF12169	DNA polymerase III subunits gamma and tau domain III
YPA_2616	PF12170	DNA polymerase III tau subunit V interacting with alpha
YPA_2616	PF13177	DNA polymerase III, delta subunit
YPA_2617	PF00156	Phosphoribosyl transferase domain
YPA_2618	PF04304	YPA_2618
YPA_2619	PF07445	Primosomal replication protein priB and priC
YPA_2620	PF10689	YPA_2620
YPA_2621	PF00924	Mechanosensitive ion channel
YPA_2621	PF12794	YPA_2621
YPA_2622	PF00665	Integrase core domain
YPA_2622	PF02796	Helix-turn-helix domain of resolvase
YPA_2623	PF01695	IstB-like ATP binding protein
YPA_2624	PF12794	YPA_2624
YPA_2624	PF12795	YPA_2624
YPA_2625	PF02635	DsrE/DsrF-like family
YPA_2626	PF00440	Bacterial regulatory proteins, tetR family
YPA_2626	PF08361	MAATS-type transcriptional repressor, C-terminal region
YPA_2627	PF00529	HlyD family secretion protein
YPA_2627	PF16576	YPA_2627
YPA_2628	PF00873	AcrB/AcrD/AcrF family
YPA_2629	PF01197	Ribosomal protein L31
YPA_2630	PF00444	Ribosomal protein L36
YPA_2632	PF10757	YPA_2632
YPA_2633	PF05321	Haemolysin expression modulating protein
YPA_2634	PF01035	6-O-methylguanine DNA methyltransferase, DNA binding domain
YPA_2635	PF09619	Type III secretion system lipoprotein chaperone (YscW)
YPA_2636	PF13622	Thioesterase-like superfamily
YPA_2637	PF00909	Ammonium Transporter Family
YPA_2638	PF00543	Nitrogen regulatory protein P-II
YPA_2639	PF00005	ABC transporter
YPA_2639	PF00664	ABC transporter transmembrane region
YPA_2640	PF00005	ABC transporter
YPA_2640	PF00664	ABC transporter transmembrane region
YPA_2641	PF01037	AsnC family
YPA_2641	PF13412	Winged helix-turn-helix DNA-binding
YPA_2642	PF00291	Pyridoxal-phosphate dependent enzyme
YPA_2643	PF08282	haloacid dehalogenase-like hydrolase
YPA_2644	PF00496	Bacterial extracellular solute-binding proteins, family 5 Middle
YPA_2644	PF12793	YPA_2644
YPA_2645	PF06508	Queuosine biosynthesis protein QueC
YPA_2646	PF13279	Thioesterase-like superfamily
YPA_2647	PF12836	Helix-hairpin-helix motif
YPA_2648	PF13145	PPIC-type PPIASE domain
YPA_2648	PF13624	SurA N-terminal domain
YPA_2649	PF00216	Bacterial DNA-binding protein
YPA_2650	PF00004	ATPase family associated with various cellular activities (AAA)
YPA_2650	PF02190	ATP-dependent protease La (LON) domain
YPA_2650	PF05362	Lon protease (S16) C-terminal proteolytic domain
YPA_2651	PF06689	ClpX C4-type zinc finger
YPA_2651	PF07724	AAA domain (Cdc48 subfamily)
YPA_2651	PF10431	C-terminal, D2-small domain, of ClpB protein
YPA_2652	PF00574	Clp protease
YPA_2653	PF00254	FKBP-type peptidyl-prolyl cis-trans isomerase
YPA_2653	PF05697	Bacterial trigger factor protein (TF)
YPA_2653	PF05698	Bacterial trigger factor protein (TF) C-terminus
YPA_2654	PF01722	BolA-like protein
YPA_2655	PF03923	YPA_2655
YPA_2655	PF08139	YPA_2655
YPA_2656	PF07690	Major Facilitator Superfamily
YPA_2657	PF03502	Nucleoside-specific channel-forming protein, Tsx
YPA_2658	PF00116	Cytochrome C oxidase subunit II, periplasmic domain
YPA_2658	PF06481	COX Aromatic Rich Motif
YPA_2659	PF00115	Cytochrome C and Quinol oxidase polypeptide I
YPA_2660	PF00510	Cytochrome c oxidase subunit III
YPA_2661	PF03626	YPA_2661
YPA_2662	PF01040	UbiA prenyltransferase family
YPA_2663	PF07690	Major Facilitator Superfamily
YPA_2664	PF04461	Protein of unknown function (DUF520)
YPA_2665	PF02558	Ketopantoate reductase PanE/ApbA
YPA_2665	PF08546	Ketopantoate reductase PanE/ApbA C terminal
YPA_2666	PF01965	DJ-1/PfpI family
YPA_2667	PF02568	Thiamine biosynthesis protein (ThiI)
YPA_2667	PF02926	THUMP domain
YPA_2669	PF02609	Exonuclease VII small subunit
YPA_2670	PF00348	Polyprenyl synthetase
YPA_2671	PF02779	Transketolase, pyrimidine binding domain
YPA_2671	PF02780	Transketolase, C-terminal domain
YPA_2671	PF13292	1-deoxy-D-xylulose-5-phosphate synthase
YPA_2672	PF01797	Transposase IS200 like
YPA_2673	PF04608	Phosphatidylglycerophosphatase A
YPA_2674	PF00586	AIR synthase related protein, N-terminal domain
YPA_2674	PF02769	AIR synthase related protein, C-terminal domain
YPA_2675	PF01029	NusB family
YPA_2676	PF00885	6,7-dimethyl-8-ribityllumazine synthase
YPA_2677	PF00383	Cytidine and deoxycytidylate deaminase zinc-binding region
YPA_2677	PF01872	RibD C-terminal domain
YPA_2678	PF03477	ATP cone domain
YPA_2681	PF01797	Transposase IS200 like
YPA_2682	PF01797	Transposase IS200 like
YPA_2683	PF02355	Protein export membrane protein
YPA_2683	PF07549	SecD/SecF GG Motif
YPA_2684	PF02355	Protein export membrane protein
YPA_2684	PF07549	SecD/SecF GG Motif
YPA_2684	PF13721	SecD export protein N-terminal TM region
YPA_2685	PF02699	Preprotein translocase subunit
YPA_2686	PF01702	Queuine tRNA-ribosyltransferase
YPA_2687	PF02547	Queuosine biosynthesis protein
YPA_2688	PF04336	YPA_2688
YPA_2689	PF00578	AhpC/TSA family
YPA_2689	PF10417	C-terminal domain of 1-Cys peroxiredoxin
YPA_2690	PF01019	Gamma-glutamyltranspeptidase
YPA_2691	PF01019	Gamma-glutamyltranspeptidase
YPA_2692	PF00106	short chain dehydrogenase
YPA_2693	PF00128	Alpha amylase, catalytic domain
YPA_2693	PF02903	Alpha amylase, N-terminal ig-like domain
YPA_2694	PF00324	Amino acid permease
YPA_2695	PF05525	YPA_2695
YPA_2696	PF12849	PBP superfamily domain
YPA_2697	PF00512	His Kinase A (phospho-acceptor) domain
YPA_2697	PF00989	PAS fold
YPA_2697	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
YPA_2697	PF11808	YPA_2697
YPA_2698	PF00072	Response regulator receiver domain
YPA_2698	PF00486	Transcriptional regulatory protein, C terminal
YPA_2699	PF00149	Calcineurin-like phosphoesterase
YPA_2699	PF12320	Type 5 capsule protein repressor C-terminal domain
YPA_2700	PF13476	AAA domain
YPA_2701	PF00665	Integrase core domain
YPA_2701	PF02796	Helix-turn-helix domain of resolvase
YPA_2702	PF01695	IstB-like ATP binding protein
YPA_2703	PF13558	Putative exonuclease SbcCD, C subunit
YPA_2704	PF00480	ROK family
YPA_2705	PF04381	Putative exonuclease, RdgC
YPA_2706	PF06865	Protein of unknown function (DUF1255)
YPA_2707	PF01202	Shikimate kinase
YPA_2708	PF00398	Ribosomal RNA adenine dimethylase
YPA_2709	PF08241	Methyltransferase domain
YPA_2712	PF07238	PilZ domain
YPA_2712	PF07317	Flagellar regulator YcgR
YPA_2713	PF00171	Aldehyde dehydrogenase family
YPA_2714	PF00696	Amino acid kinase family
YPA_2714	PF01472	PUA domain
YPA_2715	PF07417	Transcriptional regulator Crl
YPA_2716	PF06500	Alpha/beta hydrolase of unknown function (DUF1100)
YPA_2717	PF00156	Phosphoribosyl transferase domain
YPA_2718	PF03067	Chitin binding domain
YPA_2719	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
YPA_2720	PF01546	Peptidase family M20/M25/M40
YPA_2720	PF07687	Peptidase dimerisation domain
YPA_2721	PF00817	impB/mucB/samB family
YPA_2721	PF11798	IMS family HHH motif
YPA_2721	PF11799	impB/mucB/samB family C-terminal domain
YPA_2722	PF03009	Glycerophosphoryl diester phosphodiesterase family
YPA_2723	PF04400	YPA_2723
YPA_2724	PF02424	ApbE family
YPA_2725	PF00111	2Fe-2S iron-sulfur cluster binding domain
YPA_2725	PF00175	Oxidoreductase NAD-binding domain
YPA_2725	PF00970	Oxidoreductase FAD-binding domain
YPA_2726	PF02508	YPA_2726
YPA_2727	PF02508	YPA_2727
YPA_2728	PF04205	FMN-binding domain
YPA_2729	PF03116	YPA_2729
YPA_2730	PF05896	YPA_2730
YPA_2730	PF11973	YPA_2730
YPA_2732	PF03734	L,D-transpeptidase catalytic domain
YPA_2733	PF13230	Glutamine amidotransferases class-II
YPA_2734	PF13580	SIS domain
YPA_2735	PF00441	Acyl-CoA dehydrogenase, C-terminal domain
YPA_2735	PF02771	Acyl-CoA dehydrogenase, N-terminal domain
YPA_2735	PF09317	YPA_2735
YPA_2736	PF03333	Adhesin biosynthesis transcription regulatory protein
YPA_2738	PF05860	haemagglutination activity domain
YPA_2738	PF13018	YPA_2738
YPA_2739	PF03865	Haemolysin secretion/activation protein ShlB/FhaC/HecB
YPA_2739	PF08479	POTRA domain, ShlB-type
YPA_2740	PF01546	Peptidase family M20/M25/M40
YPA_2742	PF00665	Integrase core domain
YPA_2742	PF02796	Helix-turn-helix domain of resolvase
YPA_2743	PF01695	IstB-like ATP binding protein
YPA_2744	PF00266	Aminotransferase class-V
YPA_2745	PF00005	ABC transporter
YPA_2746	PF00528	Binding-protein-dependent transport system inner membrane component
YPA_2747	PF00528	Binding-protein-dependent transport system inner membrane component
YPA_2748	PF00497	Bacterial extracellular solute-binding proteins, family 3
YPA_2749	PF01380	SIS domain
YPA_2749	PF01418	Helix-turn-helix domain, rpiR family
YPA_2751	PF13318	YPA_2751
YPA_2752	PF01425	Amidase
YPA_2753	PF11533	Protein of unknown function (DUF3225)
YPA_2754	PF07690	Major Facilitator Superfamily
YPA_2755	PF03591	YPA_2755
YPA_2756	PF05437	YPA_2756
YPA_2757	PF01047	MarR family
YPA_2758	PF00529	HlyD family secretion protein
YPA_2758	PF16576	YPA_2758
YPA_2759	PF07690	Major Facilitator Superfamily
YPA_2760	PF00588	SpoU rRNA Methylase family
YPA_2760	PF08032	RNA 2'-O ribose methyltransferase substrate binding
YPA_2761	PF00085	Thioredoxin
YPA_2762	PF03942	YPA_2762
YPA_2763	PF00583	Acetyltransferase (GNAT) family
YPA_2763	PF13380	CoA binding domain
YPA_2763	PF13549	ATP-grasp domain
YPA_2763	PF13607	Succinyl-CoA ligase like flavodoxin domain
YPA_2764	PF13091	PLD-like domain
YPA_2765	PF10043	YPA_2765
YPA_2766	PF00004	ATPase family associated with various cellular activities (AAA)
YPA_2766	PF02861	Clp amino terminal domain
YPA_2766	PF07724	AAA domain (Cdc48 subfamily)
YPA_2766	PF10431	C-terminal, D2-small domain, of ClpB protein
YPA_2767	PF02578	Multi-copper polyphenol oxidoreductase laccase
YPA_2768	PF00849	RNA pseudouridylate synthase
YPA_2768	PF01479	S4 domain
YPA_2769	PF13525	Outer membrane lipoprotein
YPA_2770	PF02482	Sigma 54 modulation protein / S30EA ribosomal protein
YPA_2771	PF01797	Transposase IS200 like
YPA_2772	PF01797	Transposase IS200 like
YPA_2773	PF00800	Prephenate dehydratase
YPA_2773	PF01817	Chorismate mutase type II
YPA_2774	PF00665	Integrase core domain
YPA_2774	PF02796	Helix-turn-helix domain of resolvase
YPA_2775	PF01695	IstB-like ATP binding protein
YPA_2776	PF00590	Tetrapyrrole (Corrin/Porphyrin) Methylases
YPA_2777	PF01507	Phosphoadenosine phosphosulfate reductase family
YPA_2778	PF00009	Elongation factor Tu GTP binding domain
YPA_2779	PF01583	Adenylylsulphate kinase
YPA_2780	PF12084	YPA_2780
YPA_2781	PF04977	Septum formation initiator
YPA_2782	PF01128	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
YPA_2783	PF02542	YgbB family
YPA_2784	PF01142	tRNA pseudouridine synthase D (TruD)
YPA_2785	PF01975	Survival protein SurE
YPA_2786	PF01135	Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)
YPA_2787	PF01476	LysM domain
YPA_2787	PF01551	Peptidase family M23
YPA_2788	PF00140	Sigma-70 factor, region 1
YPA_2788	PF04539	Sigma-70 region 3
YPA_2788	PF04542	Sigma-70 region 2
YPA_2788	PF04545	Sigma-70, region 4
YPA_2789	PF00488	MutS domain V
YPA_2789	PF01624	MutS domain I
YPA_2789	PF05188	MutS domain II
YPA_2789	PF05190	MutS family domain IV
YPA_2789	PF05192	MutS domain III
YPA_2791	PF02502	Ribose/Galactose Isomerase
YPA_2792	PF00107	Zinc-binding dehydrogenase
YPA_2792	PF08240	Alcohol dehydrogenase GroES-like domain
YPA_2793	PF13561	Enoyl-(Acyl carrier protein) reductase
YPA_2794	PF02733	Dak1 domain
YPA_2795	PF02734	DAK2 domain
YPA_2796	PF04198	Putative sugar-binding domain
YPA_2796	PF13518	Helix-turn-helix domain
YPA_2797	PF02040	YPA_2797
YPA_2798	PF01022	Bacterial regulatory protein, arsR family
YPA_2800	PF00497	Bacterial extracellular solute-binding proteins, family 3
YPA_2801	PF00034	Cytochrome c
YPA_2801	PF03150	Di-haem cytochrome c peroxidase
YPA_2801	PF14376	YPA_2801
YPA_2803	PF00593	TonB dependent receptor
YPA_2803	PF07715	TonB-dependent Receptor Plug Domain
YPA_2804	PF00593	TonB dependent receptor
YPA_2805	PF07906	YPA_2805
YPA_2807	PF00557	Metallopeptidase family M24
YPA_2808	PF11903	YPA_2808
YPA_2809	PF05681	YPA_2809
YPA_2809	PF05683	Fumarase C-terminus
YPA_2810	PF00370	FGGY family of carbohydrate kinases, N-terminal domain
YPA_2810	PF02782	FGGY family of carbohydrate kinases, C-terminal domain
YPA_2811	PF01261	Xylose isomerase-like TIM barrel
YPA_2812	PF02653	YPA_2812
YPA_2813	PF02653	YPA_2813
YPA_2814	PF00005	ABC transporter
YPA_2815	PF01797	Transposase IS200 like
YPA_2816	PF13407	Periplasmic binding protein domain
YPA_2817	PF00455	YPA_2817
YPA_2817	PF08220	DeoR-like helix-turn-helix domain
YPA_2818	PF00596	Class II Aldolase and Adducin N-terminal domain
YPA_2819	PF00384	Molybdopterin oxidoreductase
YPA_2819	PF01568	Molydopterin dinucleotide binding domain
YPA_2819	PF04879	Molybdopterin oxidoreductase Fe4S4 domain
YPA_2820	PF12800	4Fe-4S binding domain
YPA_2820	PF13247	4Fe-4S dicluster domain
YPA_2821	PF04976	YPA_2821
YPA_2822	PF02613	Nitrate reductase delta subunit
YPA_2823	PF01292	Prokaryotic cytochrome b561
YPA_2824	PF07361	Cytochrome b562
YPA_2825	PF00141	Peroxidase
YPA_2826	PF13407	Periplasmic binding protein domain
YPA_2827	PF10054	Predicted periplasmic lipoprotein (DUF2291)
YPA_2828	PF00005	ABC transporter
YPA_2829	PF02653	YPA_2829
YPA_2830	PF00456	Transketolase, thiamine diphosphate binding domain
YPA_2831	PF02779	Transketolase, pyrimidine binding domain
YPA_2831	PF02780	Transketolase, C-terminal domain
YPA_2832	PF00370	FGGY family of carbohydrate kinases, N-terminal domain
YPA_2832	PF02782	FGGY family of carbohydrate kinases, C-terminal domain
YPA_2833	PF02952	L-fucose isomerase, C-terminal domain
YPA_2835	PF01047	MarR family
YPA_2835	PF04198	Putative sugar-binding domain
YPA_2836	PF07690	Major Facilitator Superfamily
YPA_2837	PF02464	Competence-damaged protein
YPA_2838	PF00154	recA bacterial DNA recombination protein
YPA_2839	PF02631	RecX family
YPA_2840	PF01411	tRNA synthetases class II (A)
YPA_2840	PF07973	Threonyl and Alanyl tRNA synthetase second additional domain
YPA_2841	PF13419	Haloacid dehalogenase-like hydrolase
YPA_2843	PF04262	Glutamate-cysteine ligase
YPA_2844	PF02664	S-Ribosylhomocysteinase (LuxS)
YPA_2845	PF01797	Transposase IS200 like
YPA_2846	PF00571	CBS domain
YPA_2846	PF01595	YPA_2846
YPA_2846	PF03471	Transporter associated domain
YPA_2847	PF01578	YPA_2847
YPA_2848	PF00448	SRP54-type protein, GTPase domain
YPA_2848	PF02881	SRP54-type protein, helical bundle domain
YPA_2848	PF02978	Signal peptide binding domain
YPA_2849	PF00886	Ribosomal protein S16
YPA_2850	PF01782	RimM N-terminal domain
YPA_2850	PF05239	PRC-barrel domain
YPA_2851	PF01746	tRNA (Guanine-1)-methyltransferase
YPA_2852	PF01245	Ribosomal protein L19
YPA_2853	PF01797	Transposase IS200 like
YPA_2854	PF04338	Protein of unknown function, DUF481
YPA_2855	PF03605	YPA_2855
YPA_2856	PF03605	YPA_2856
YPA_2857	PF03605	YPA_2857
YPA_2858	PF00072	Response regulator receiver domain
YPA_2858	PF04397	LytTr DNA-binding domain
YPA_2859	PF00793	DAHP synthetase I family
YPA_2860	PF01817	Chorismate mutase type II
YPA_2860	PF02153	Prephenate dehydrogenase
YPA_2861	PF00800	Prephenate dehydratase
YPA_2862	PF01695	IstB-like ATP binding protein
YPA_2863	PF00665	Integrase core domain
YPA_2863	PF02796	Helix-turn-helix domain of resolvase
YPA_2864	PF10414	Sirohaem synthase dimerisation region
YPA_2864	PF13241	Putative NAD(P)-binding
YPA_2864	PF14824	Sirohaem biosynthesis protein central
YPA_2865	PF07927	YcfA-like protein
YPA_2866	PF15919	YPA_2866
YPA_2867	PF01507	Phosphoadenosine phosphosulfate reductase family
YPA_2868	PF01507	Phosphoadenosine phosphosulfate reductase family
YPA_2869	PF01077	Nitrite and sulphite reductase 4Fe-4S domain
YPA_2869	PF03460	Nitrite/Sulfite reductase ferredoxin-like half domain
YPA_2870	PF00175	Oxidoreductase NAD-binding domain
YPA_2870	PF00258	Flavodoxin
YPA_2870	PF00667	FAD binding domain
YPA_2871	PF01242	6-pyruvoyl tetrahydropterin synthase
YPA_2872	PF04055	Radical SAM superfamily
YPA_2872	PF13394	4Fe-4S single cluster domain
YPA_2873	PF00080	Copper/zinc superoxide dismutase (SODC)
YPA_2874	PF00113	Enolase, C-terminal TIM barrel domain
YPA_2874	PF03952	Enolase, N-terminal domain
YPA_2875	PF00117	Glutamine amidotransferase class-I
YPA_2875	PF06418	CTP synthase N-terminus
YPA_2876	PF03819	MazG nucleotide pyrophosphohydrolase domain
YPA_2877	PF02824	TGS domain
YPA_2877	PF04607	Region found in RelA / SpoT proteins
YPA_2877	PF13291	ACT domain
YPA_2877	PF13328	HD domain
YPA_2880	PF00072	Response regulator receiver domain
YPA_2880	PF00512	His Kinase A (phospho-acceptor) domain
YPA_2880	PF01627	Hpt domain
YPA_2880	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
YPA_2880	PF09984	YPA_2880
YPA_2881	PF00595	PDZ domain (Also known as DHR or GLGF)
YPA_2881	PF13180	PDZ domain
YPA_2881	PF13365	Trypsin-like peptidase domain
YPA_2882	PF01966	HD domain
YPA_2882	PF13286	Phosphohydrolase-associated domain
YPA_2883	PF01048	Phosphorylase superfamily
YPA_2884	PF01497	Periplasmic binding protein
YPA_2885	PF03458	YPA_2885
YPA_2887	PF01521	Iron-sulphur cluster biosynthesis
YPA_2888	PF00654	Voltage gated chloride channel
YPA_2889	PF00202	Aminotransferase class-III
YPA_2890	PF01032	FecCD transport family
YPA_2891	PF01497	Periplasmic binding protein
YPA_2892	PF00005	ABC transporter
YPA_2893	PF00905	Penicillin binding protein transpeptidase domain
YPA_2893	PF00912	Transglycosylase
YPA_2893	PF14812	YPA_2893
YPA_2893	PF14814	Bifunctional transglycosylase second domain
YPA_2894	PF00270	DEAD/DEAH box helicase
YPA_2894	PF00271	Helicase conserved C-terminal domain
YPA_2894	PF04408	Helicase associated domain (HA2)
YPA_2894	PF08482	YPA_2894
YPA_2895	PF02834	LigT like Phosphoesterase
YPA_2896	PF03749	Sugar fermentation stimulation protein
YPA_2898	PF01258	Prokaryotic dksA/traR C4-type zinc finger
YPA_2899	PF00749	tRNA synthetases class I (E and Q), catalytic domain
YPA_2900	PF01743	Poly A polymerase head domain
YPA_2900	PF12626	Polymerase A arginine-rich C-terminus
YPA_2900	PF12627	Probable RNA and SrmB- binding site of polymerase A
YPA_2901	PF01288	7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK)
YPA_2902	PF02548	Ketopantoate hydroxymethyltransferase
YPA_2903	PF02569	Pantoate-beta-alanine ligase
YPA_2904	PF02261	Aspartate decarboxylase
YPA_2905	PF01522	Polysaccharide deacetylase
YPA_2907	PF01061	YPA_2907
YPA_2908	PF00005	ABC transporter
YPA_2909	PF00484	Carbonic anhydrase
YPA_2910	PF00156	Phosphoribosyl transferase domain
YPA_2911	PF00394	Multicopper oxidase
YPA_2911	PF07731	Multicopper oxidase
YPA_2911	PF07732	Multicopper oxidase
YPA_2911	PF10518	TAT (twin-arginine translocation) pathway signal sequence
YPA_2912	PF09691	Bacterial chaperone lipoprotein (PulS_OutS)
YPA_2913	PF01564	Spermine/spermidine synthase
YPA_2913	PF17284	YPA_2913
YPA_2914	PF02675	S-adenosylmethionine decarboxylase
YPA_2915	PF00892	EamA-like transporter family
YPA_2916	PF06062	YPA_2916
YPA_2917	PF00330	Aconitase family (aconitate hydratase)
YPA_2917	PF06434	Aconitate hydratase 2 N-terminus
YPA_2917	PF11791	Aconitate B N-terminal domain
YPA_2918	PF01797	Transposase IS200 like
YPA_2919	PF02852	Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain
YPA_2919	PF07992	Pyridine nucleotide-disulphide oxidoreductase
YPA_2920	PF00198	2-oxoacid dehydrogenases acyltransferase (catalytic domain)
YPA_2920	PF00364	Biotin-requiring enzyme
YPA_2920	PF02817	e3 binding domain
YPA_2921	PF00456	Transketolase, thiamine diphosphate binding domain
YPA_2922	PF00392	Bacterial regulatory proteins, gntR family
YPA_2922	PF07729	FCD domain
YPA_2923	PF00324	Amino acid permease
YPA_2924	PF17113	YPA_2924
YPA_2925	PF01510	N-acetylmuramoyl-L-alanine amidase
YPA_2926	PF01729	Quinolinate phosphoribosyl transferase, C-terminal domain
YPA_2926	PF02749	Quinolinate phosphoribosyl transferase, N-terminal domain
YPA_2927	PF07963	Prokaryotic N-terminal methylation motif
YPA_2928	PF00437	Type II/IV secretion system protein
YPA_2929	PF00482	Type II secretion system (T2SS), protein F
YPA_2930	PF00478	IMP dehydrogenase / GMP reductase domain
YPA_2931	PF01121	Dephospho-CoA kinase
YPA_2932	PF07072	Protein of unknown function (DUF1342)
YPA_2933	PF03884	Domain of unknown function (DUF329)
YPA_2934	PF01797	Transposase IS200 like
YPA_2935	PF00665	Integrase core domain
YPA_2935	PF02796	Helix-turn-helix domain of resolvase
YPA_2936	PF01695	IstB-like ATP binding protein
YPA_2937	PF13589	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
YPA_2938	PF03235	YPA_2938
YPA_2938	PF07510	YPA_2938
YPA_2939	PF00589	Phage integrase family
YPA_2939	PF13356	Domain of unknown function (DUF4102)
YPA_2940	PF03739	YPA_2940
YPA_2941	PF03739	YPA_2941
YPA_2942	PF00883	Cytosol aminopeptidase family, catalytic domain
YPA_2942	PF02789	Cytosol aminopeptidase family, N-terminal domain
YPA_2943	PF04364	DNA polymerase III chi subunit, HolC
YPA_2944	PF00133	tRNA synthetases class I (I, L, M and V)
YPA_2944	PF08264	Anticodon-binding domain of tRNA
YPA_2944	PF10458	Valyl tRNA synthetase tRNA binding arm
YPA_2945	PF00583	Acetyltransferase (GNAT) family
YPA_2946	PF06877	Regulator of ribonuclease activity B
YPA_2947	PF02729	Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain
YPA_2948	PF00185	Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain
YPA_2948	PF02729	Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain
YPA_2949	PF04074	Domain of unknown function (DUF386)
YPA_2950	PF00496	Bacterial extracellular solute-binding proteins, family 5 Middle
YPA_2952	PF00528	Binding-protein-dependent transport system inner membrane component
YPA_2953	PF00528	Binding-protein-dependent transport system inner membrane component
YPA_2953	PF12911	YPA_2953
YPA_2954	PF00005	ABC transporter
YPA_2955	PF00005	ABC transporter
YPA_2956	PF03477	ATP cone domain
YPA_2956	PF13597	Anaerobic ribonucleoside-triphosphate reductase
YPA_2957	PF13353	4Fe-4S single cluster domain
YPA_2958	PF00392	Bacterial regulatory proteins, gntR family
YPA_2958	PF07702	UTRA domain
YPA_2959	PF06754	YPA_2959
YPA_2960	PF05845	Bacterial phosphonate metabolism protein (PhnH)
YPA_2961	PF05861	YPA_2961
YPA_2962	PF06007	YPA_2962
YPA_2963	PF00005	ABC transporter
YPA_2964	PF00005	ABC transporter
YPA_2965	PF07969	Amidohydrolase family
YPA_2966	PF13238	AAA domain
YPA_2967	PF12706	Beta-lactamase superfamily domain
YPA_2970	PF05426	Alginate lyase
YPA_2971	PF00005	ABC transporter
YPA_2971	PF08402	TOBE domain
YPA_2972	PF00528	Binding-protein-dependent transport system inner membrane component
YPA_2973	PF00528	Binding-protein-dependent transport system inner membrane component
YPA_2974	PF01547	Bacterial extracellular solute-binding protein
YPA_2975	PF05426	Alginate lyase
YPA_2976	PF05426	Alginate lyase
YPA_2976	PF07940	Heparinase II/III-like protein
YPA_2977	PF01541	GIY-YIG catalytic domain
YPA_2978	PF00583	Acetyltransferase (GNAT) family
YPA_2979	PF02036	SCP-2 sterol transfer family
YPA_2981	PF01136	YPA_2981
YPA_2982	PF01136	YPA_2982
YPA_2983	PF02321	Outer membrane efflux protein
YPA_2984	PF00873	AcrB/AcrD/AcrF family
YPA_2985	PF16576	YPA_2985
YPA_2986	PF00296	Luciferase-like monooxygenase
YPA_2987	PF01381	Helix-turn-helix
YPA_2988	PF05973	YPA_2988
YPA_2990	PF00270	DEAD/DEAH box helicase
YPA_2990	PF00271	Helicase conserved C-terminal domain
YPA_2990	PF03880	DbpA RNA binding domain
YPA_2990	PF12343	YPA_2990
YPA_2991	PF07719	Tetratricopeptide repeat
YPA_2991	PF13181	Tetratricopeptide repeat
YPA_2992	PF00013	KH domain
YPA_2992	PF00575	S1 RNA binding domain
YPA_2992	PF01138	3' exoribonuclease family, domain 1
YPA_2992	PF03725	3' exoribonuclease family, domain 2
YPA_2992	PF03726	Polyribonucleotide nucleotidyltransferase, RNA binding domain
YPA_2993	PF00665	Integrase core domain
YPA_2993	PF13276	YPA_2993
YPA_2994	PF13518	Helix-turn-helix domain
YPA_2995	PF02423	Ornithine cyclodeaminase/mu-crystallin family
YPA_2996	PF00291	Pyridoxal-phosphate dependent enzyme
YPA_2998	PF07676	WD40-like Beta Propeller Repeat
YPA_2999	PF07119	YPA_2999
YPA_3000	PF00011	Hsp20/alpha crystallin family
YPA_3001	PF00011	Hsp20/alpha crystallin family
YPA_3002	PF02080	TrkA-C domain
YPA_3002	PF06826	YPA_3002
YPA_3003	PF00155	Aminotransferase class I and II
YPA_3005	PF00128	Alpha amylase, catalytic domain
YPA_3006	PF00389	D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
YPA_3006	PF02826	D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
YPA_3008	PF00691	OmpA family
YPA_3008	PF13488	YPA_3008
YPA_3009	PF13673	Acetyltransferase (GNAT) domain
YPA_3010	PF03352	Methyladenine glycosylase
YPA_3011	PF02091	Glycyl-tRNA synthetase alpha subunit
YPA_3012	PF02092	YPA_3012
YPA_3012	PF05746	DALR anticodon binding domain
YPA_3013	PF11254	YPA_3013
YPA_3014	PF00359	Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2
YPA_3014	PF02302	PTS system, Lactose/Cellobiose specific IIB subunit
YPA_3014	PF02378	Phosphotransferase system, EIIC
YPA_3015	PF01232	Mannitol dehydrogenase Rossmann domain
YPA_3015	PF08125	Mannitol dehydrogenase C-terminal domain
YPA_3016	PF05068	Mannitol repressor
YPA_3017	PF10928	Protein of unknown function (DUF2810)
YPA_3018	PF10517	YPA_3018
YPA_3020	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
YPA_3021	PF01695	IstB-like ATP binding protein
YPA_3022	PF00665	Integrase core domain
YPA_3022	PF02796	Helix-turn-helix domain of resolvase
YPA_3023	PF00672	HAMP domain
YPA_3023	PF16591	YPA_3023
YPA_3024	PF00081	Iron/manganese superoxide dismutases, alpha-hairpin domain
YPA_3024	PF02777	Iron/manganese superoxide dismutases, C-terminal domain
YPA_3025	PF02634	FdhD/NarQ family
YPA_3026	PF00384	Molybdopterin oxidoreductase
YPA_3026	PF04879	Molybdopterin oxidoreductase Fe4S4 domain
YPA_3027	PF00384	Molybdopterin oxidoreductase
YPA_3027	PF01568	Molydopterin dinucleotide binding domain
YPA_3028	PF09163	Formate dehydrogenase N, transmembrane
YPA_3028	PF13247	4Fe-4S dicluster domain
YPA_3029	PF01292	Prokaryotic cytochrome b561
YPA_3030	PF04216	Protein involved in formate dehydrogenase formation
YPA_3031	PF03841	L-seryl-tRNA selenium transferase
YPA_3031	PF12390	YPA_3031
YPA_3032	PF00009	Elongation factor Tu GTP binding domain
YPA_3032	PF09106	Elongation factor SelB, winged helix
YPA_3032	PF09107	Elongation factor SelB, winged helix
YPA_3033	PF01526	YPA_3033
YPA_3035	PF13988	YPA_3035
YPA_3037	PF07690	Major Facilitator Superfamily
YPA_3038	PF00665	Integrase core domain
YPA_3038	PF13276	YPA_3038
YPA_3039	PF13518	Helix-turn-helix domain
YPA_3043	PF00691	OmpA family
YPA_3043	PF13677	YPA_3043
YPA_3044	PF01618	YPA_3044
YPA_3045	PF04539	Sigma-70 region 3
YPA_3045	PF04542	Sigma-70 region 2
YPA_3045	PF04545	Sigma-70, region 4
YPA_3046	PF03748	YPA_3046
YPA_3047	PF02120	Flagellar hook-length control protein FliK
YPA_3049	PF02561	Flagellar protein FliS
YPA_3050	PF02465	YPA_3050
YPA_3050	PF07195	YPA_3050
YPA_3050	PF07196	Flagellin hook IN motif
YPA_3051	PF00669	Bacterial flagellin N-terminal helical region
YPA_3051	PF00700	Bacterial flagellin C-terminal helical region
YPA_3052	PF00669	Bacterial flagellin N-terminal helical region
YPA_3052	PF00700	Bacterial flagellin C-terminal helical region
YPA_3053	PF00669	Bacterial flagellin N-terminal helical region
YPA_3053	PF00700	Bacterial flagellin C-terminal helical region
YPA_3054	PF00486	Transcriptional regulatory protein, C terminal
YPA_3057	PF00669	Bacterial flagellin N-terminal helical region
YPA_3058	PF00460	Flagella basal body rod protein
YPA_3058	PF06429	Flagellar basal body rod FlgEFG protein C-terminal
YPA_3059	PF10135	YPA_3059
YPA_3060	PF02119	YPA_3060
YPA_3061	PF02107	YPA_3061
YPA_3062	PF00460	Flagella basal body rod protein
YPA_3062	PF06429	Flagellar basal body rod FlgEFG protein C-terminal
YPA_3063	PF00460	Flagella basal body rod protein
YPA_3063	PF06429	Flagellar basal body rod FlgEFG protein C-terminal
YPA_3064	PF00460	Flagella basal body rod protein
YPA_3064	PF06429	Flagellar basal body rod FlgEFG protein C-terminal
YPA_3064	PF07559	Flagellar basal body protein FlaE
YPA_3065	PF03963	YPA_3065
YPA_3065	PF13860	FlgD Ig-like domain
YPA_3065	PF13861	FlgD Tudor-like domain
YPA_3066	PF00460	Flagella basal body rod protein
YPA_3066	PF06429	Flagellar basal body rod FlgEFG protein C-terminal
YPA_3067	PF00460	Flagella basal body rod protein
YPA_3068	PF13144	SAF-like
YPA_3069	PF04316	Anti-sigma-28 factor, FlgM
YPA_3070	PF05130	FlgN protein
YPA_3071	PF02050	Flagellar FliJ protein
YPA_3072	PF00006	ATP synthase alpha/beta family, nucleotide-binding domain
YPA_3073	PF02108	YPA_3073
YPA_3073	PF09811	YPA_3073
YPA_3074	PF01706	FliG C-terminal domain
YPA_3074	PF14841	FliG middle domain
YPA_3075	PF00665	Integrase core domain
YPA_3075	PF02796	Helix-turn-helix domain of resolvase
YPA_3076	PF01695	IstB-like ATP binding protein
YPA_3077	PF14842	FliG N-terminal domain
YPA_3078	PF01514	Secretory protein of YscJ/FliF family
YPA_3078	PF08345	YPA_3078
YPA_3079	PF02049	YPA_3079
YPA_3080	PF00158	Sigma-54 interaction domain
YPA_3080	PF02954	Bacterial regulatory protein, Fis family
YPA_3082	PF01052	Surface presentation of antigens (SPOA)
YPA_3083	PF01052	Surface presentation of antigens (SPOA)
YPA_3084	PF00813	YPA_3084
YPA_3085	PF01313	YPA_3085
YPA_3086	PF01311	YPA_3086
YPA_3087	PF01312	FlhB HrpN YscU SpaS Family
YPA_3088	PF00771	FHIPEP family
YPA_3090	PF11153	YPA_3090
YPA_3092	PF01497	Periplasmic binding protein
YPA_3093	PF00419	Fimbrial protein
YPA_3094	PF00345	Pili and flagellar-assembly chaperone, PapD N-terminal domain
YPA_3094	PF02753	Pili assembly chaperone PapD, C-terminal domain
YPA_3095	PF00577	Outer membrane usher protein
YPA_3095	PF13953	PapC C-terminal domain
YPA_3095	PF13954	PapC N-terminal domain
YPA_3096	PF01797	Transposase IS200 like
YPA_3097	PF01478	Type IV leader peptidase family
YPA_3099	PF13629	YPA_3099
YPA_3100	PF00263	YPA_3100
YPA_3102	PF00437	Type II/IV secretion system protein
YPA_3103	PF00482	Type II secretion system (T2SS), protein F
YPA_3104	PF00482	Type II secretion system (T2SS), protein F
YPA_3106	PF07811	YPA_3106
YPA_3107	PF16964	YPA_3107
YPA_3109	PF02472	Biopolymer transport protein ExbD/TolR
YPA_3110	PF01618	YPA_3110
YPA_3111	PF01053	Cys/Met metabolism PLP-dependent enzyme
YPA_3112	PF09335	YPA_3112
YPA_3113	PF06719	YPA_3113
YPA_3113	PF12833	Helix-turn-helix domain
YPA_3114	PF00465	Iron-containing alcohol dehydrogenase
YPA_3115	PF00248	Aldo/keto reductase family
YPA_3116	PF11842	YPA_3116
YPA_3117	PF04055	Radical SAM superfamily
YPA_3117	PF08497	YPA_3117
YPA_3118	PF07731	Multicopper oxidase
YPA_3118	PF07732	Multicopper oxidase
YPA_3119	PF01553	Acyltransferase
YPA_3120	PF00521	DNA gyrase/topoisomerase IV, subunit A
YPA_3120	PF03989	DNA gyrase C-terminal domain, beta-propeller
YPA_3121	PF02525	Flavodoxin-like fold
YPA_3122	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
YPA_3122	PF03466	LysR substrate binding domain
YPA_3123	PF00204	DNA gyrase B
YPA_3123	PF00986	DNA gyrase B subunit, carboxyl terminus
YPA_3123	PF01751	Toprim domain
YPA_3123	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
YPA_3124	PF05728	Uncharacterised protein family (UPF0227)
YPA_3125	PF00149	Calcineurin-like phosphoesterase
YPA_3126	PF00149	Calcineurin-like phosphoesterase
YPA_3127	PF06853	YPA_3127
YPA_3128	PF00293	NUDIX domain
YPA_3129	PF02321	Outer membrane efflux protein
YPA_3130	PF06693	YPA_3130
YPA_3131	PF03738	Glutathionylspermidine synthase preATP-grasp
YPA_3132	PF02900	Catalytic LigB subunit of aromatic ring-opening dioxygenase
YPA_3133	PF00926	3,4-dihydroxy-2-butanone 4-phosphate synthase
YPA_3134	PF04380	YPA_3134
YPA_3135	PF13520	Amino acid permease
YPA_3136	PF00294	pfkB family carbohydrate kinase
YPA_3136	PF01467	Cytidylyltransferase
YPA_3137	PF03710	Glutamate-ammonia ligase adenylyltransferase
YPA_3137	PF08335	GlnD PII-uridylyltransferase
YPA_3138	PF01928	CYTH domain
YPA_3139	PF08239	Bacterial SH3 domain
YPA_3140	PF01743	Poly A polymerase head domain
YPA_3140	PF01966	HD domain
YPA_3140	PF12627	Probable RNA and SrmB- binding site of polymerase A
YPA_3141	PF02673	YPA_3141
YPA_3142	PF02152	Dihydroneopterin aldolase
YPA_3143	PF02660	YPA_3143
YPA_3144	PF00814	Glycoprotease family
YPA_3145	PF01165	Ribosomal protein S21
YPA_3146	PF01807	CHC2 zinc finger
YPA_3146	PF08275	DNA primase catalytic core, N-terminal domain
YPA_3146	PF08278	DNA primase DnaG DnaB-binding
YPA_3146	PF10410	DnaB-helicase binding domain of primase
YPA_3146	PF13155	Toprim-like
YPA_3147	PF00140	Sigma-70 factor, region 1
YPA_3147	PF03979	Sigma-70 factor, region 1
YPA_3147	PF04539	Sigma-70 region 3
YPA_3147	PF04542	Sigma-70 region 2
YPA_3147	PF04545	Sigma-70, region 4
YPA_3147	PF04546	Sigma-70, non-essential region
YPA_3150	PF03592	Terminase small subunit
YPA_3154	PF01695	IstB-like ATP binding protein
YPA_3155	PF00665	Integrase core domain
YPA_3155	PF02796	Helix-turn-helix domain of resolvase
YPA_3157	PF02661	Fic/DOC family
YPA_3159	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
YPA_3159	PF03466	LysR substrate binding domain
YPA_3161	PF08803	Putative mono-oxygenase ydhR
YPA_3162	PF01042	Endoribonuclease L-PSP
YPA_3163	PF01042	Endoribonuclease L-PSP
YPA_3164	PF08348	YPA_3164
YPA_3166	PF10604	Polyketide cyclase / dehydrase and lipid transport
YPA_3167	PF03553	YPA_3167
YPA_3168	PF00155	Aminotransferase class I and II
YPA_3170	PF17090	YPA_3170
YPA_3171	PF13437	HlyD family secretion protein
YPA_3171	PF13533	Biotin-lipoyl like
YPA_3172	PF04632	YPA_3172
YPA_3173	PF02321	Outer membrane efflux protein
YPA_3174	PF00933	Glycosyl hydrolase family 3 N terminal domain
YPA_3174	PF01915	Glycosyl hydrolase family 3 C-terminal domain
YPA_3174	PF14310	Fibronectin type III-like domain
YPA_3176	PF00528	Binding-protein-dependent transport system inner membrane component
YPA_3177	PF00528	Binding-protein-dependent transport system inner membrane component
YPA_3178	PF01547	Bacterial extracellular solute-binding protein
YPA_3179	PF00356	Bacterial regulatory proteins, lacI family
YPA_3179	PF13377	Periplasmic binding protein-like domain
YPA_3181	PF00005	ABC transporter
YPA_3181	PF08402	TOBE domain
YPA_3182	PF10091	Putative glucoamylase
YPA_3183	PF13557	YPA_3183
YPA_3184	PF03797	Autotransporter beta-domain
YPA_3187	PF15599	YPA_3187
YPA_3189	PF13332	YPA_3189
YPA_3190	PF04829	YPA_3190
YPA_3190	PF05860	haemagglutination activity domain
YPA_3190	PF13018	YPA_3190
YPA_3190	PF13332	YPA_3190
YPA_3191	PF03865	Haemolysin secretion/activation protein ShlB/FhaC/HecB
YPA_3191	PF08479	POTRA domain, ShlB-type
YPA_3191	PF17287	YPA_3191
YPA_3192	PF00092	von Willebrand factor type A domain
YPA_3193	PF02342	TerD domain
YPA_3194	PF00092	von Willebrand factor type A domain
YPA_3195	PF00092	von Willebrand factor type A domain
YPA_3195	PF15616	YPA_3195
YPA_3196	PF13672	Protein phosphatase 2C
YPA_3197	PF00069	Protein kinase domain
YPA_3198	PF03729	YPA_3198
YPA_3199	PF00724	NADH:flavin oxidoreductase / NADH oxidase family
YPA_3199	PF07992	Pyridine nucleotide-disulphide oxidoreductase
YPA_3200	PF05175	Methyltransferase small domain
YPA_3201	PF03212	Pertactin
YPA_3201	PF03797	Autotransporter beta-domain
YPA_3202	PF01863	Protein of unknown function DUF45
YPA_3203	PF01408	Oxidoreductase family, NAD-binding Rossmann fold
YPA_3204	PF00375	Sodium:dicarboxylate symporter family
YPA_3205	PF01797	Transposase IS200 like
YPA_3206	PF10688	YPA_3206
YPA_3207	PF04295	YPA_3207
YPA_3207	PF08666	SAF domain
YPA_3208	PF08125	Mannitol dehydrogenase C-terminal domain
YPA_3209	PF01232	Mannitol dehydrogenase Rossmann domain
YPA_3210	PF02614	Glucuronate isomerase
YPA_3211	PF07690	Major Facilitator Superfamily
YPA_3212	PF00392	Bacterial regulatory proteins, gntR family
YPA_3212	PF07729	FCD domain
YPA_3214	PF09335	YPA_3214
YPA_3215	PF13721	SecD export protein N-terminal TM region
YPA_3216	PF06476	YPA_3216
YPA_3218	PF05957	YPA_3218
YPA_3219	PF07332	YPA_3219
YPA_3220	PF13997	YPA_3220
YPA_3221	PF07681	YPA_3221
YPA_3223	PF00665	Integrase core domain
YPA_3223	PF02796	Helix-turn-helix domain of resolvase
YPA_3224	PF01695	IstB-like ATP binding protein
YPA_3225	PF00132	Bacterial transferase hexapeptide (six repeats)
YPA_3226	PF01488	Shikimate / quinate 5-dehydrogenase
YPA_3226	PF08501	Shikimate dehydrogenase substrate binding domain
YPA_3227	PF01300	Telomere recombination
YPA_3228	PF01396	YPA_3228
YPA_3229	PF04361	YPA_3229
YPA_3230	PF02481	DNA recombination-mediator protein A
YPA_3231	PF01327	Polypeptide deformylase
YPA_3232	PF00551	Formyl transferase
YPA_3232	PF02911	Formyl transferase, C-terminal domain
YPA_3233	PF01029	NusB family
YPA_3233	PF01189	NOL1/NOP2/sun family
YPA_3234	PF02080	TrkA-C domain
YPA_3234	PF02254	TrkA-N domain
YPA_3235	PF01741	Large-conductance mechanosensitive channel, MscL
YPA_3236	PF03889	YPA_3236
YPA_3237	PF13411	MerR HTH family regulatory protein
YPA_3238	PF01196	Ribosomal protein L17
YPA_3239	PF01000	RNA polymerase Rpb3/RpoA insert domain
YPA_3239	PF01193	RNA polymerase Rpb3/Rpb11 dimerisation domain
YPA_3239	PF03118	Bacterial RNA polymerase, alpha chain C terminal domain
YPA_3240	PF00163	Ribosomal protein S4/S9 N-terminal domain
YPA_3240	PF01479	S4 domain
YPA_3241	PF00411	Ribosomal protein S11
YPA_3242	PF00416	Ribosomal protein S13/S18
YPA_3243	PF00344	SecY translocase
YPA_3244	PF00828	Ribosomal protein L18e/L15
YPA_3245	PF00327	Ribosomal protein L30p/L7e
YPA_3246	PF00333	Ribosomal protein S5, N-terminal domain
YPA_3246	PF03719	Ribosomal protein S5, C-terminal domain
YPA_3247	PF00861	Ribosomal L18p/L5e family
YPA_3248	PF00347	Ribosomal protein L6
YPA_3249	PF00410	Ribosomal protein S8
YPA_3250	PF00253	Ribosomal protein S14p/S29e
YPA_3251	PF00281	Ribosomal protein L5
YPA_3251	PF00673	ribosomal L5P family C-terminus
YPA_3252	PF00467	KOW motif
YPA_3252	PF17136	YPA_3252
YPA_3253	PF00238	Ribosomal protein L14p/L23e
YPA_3254	PF00366	Ribosomal protein S17
YPA_3255	PF00831	Ribosomal L29 protein
YPA_3256	PF00252	Ribosomal protein L16p/L10e
YPA_3257	PF00189	Ribosomal protein S3, C-terminal domain
YPA_3257	PF07650	KH domain
YPA_3258	PF00237	Ribosomal protein L22p/L17e
YPA_3259	PF00203	Ribosomal protein S19
YPA_3260	PF00181	Ribosomal Proteins L2, RNA binding domain
YPA_3260	PF03947	Ribosomal Proteins L2, C-terminal domain
YPA_3261	PF00276	Ribosomal protein L23
YPA_3262	PF00573	Ribosomal protein L4/L1 family
YPA_3263	PF00297	Ribosomal protein L3
YPA_3264	PF00338	Ribosomal protein S10p/S20e
YPA_3265	PF00210	Ferritin-like domain
YPA_3266	PF00665	Integrase core domain
YPA_3266	PF02796	Helix-turn-helix domain of resolvase
YPA_3267	PF01695	IstB-like ATP binding protein
YPA_3268	PF01797	Transposase IS200 like
YPA_3269	PF00009	Elongation factor Tu GTP binding domain
YPA_3269	PF03143	Elongation factor Tu C-terminal domain
YPA_3269	PF03144	Elongation factor Tu domain 2
YPA_3270	PF00009	Elongation factor Tu GTP binding domain
YPA_3270	PF00679	Elongation factor G C-terminus
YPA_3270	PF03144	Elongation factor Tu domain 2
YPA_3270	PF03764	Elongation factor G, domain IV
YPA_3270	PF14492	Elongation Factor G, domain II
YPA_3271	PF00177	Ribosomal protein S7p/S5e
YPA_3272	PF00164	Ribosomal protein S12/S23
YPA_3273	PF04077	DsrH like protein
YPA_3274	PF02635	DsrE/DsrF-like family
YPA_3275	PF02635	DsrE/DsrF-like family
YPA_3276	PF08348	YPA_3276
YPA_3276	PF13309	YPA_3276
YPA_3277	PF00254	FKBP-type peptidyl-prolyl cis-trans isomerase
YPA_3277	PF01346	Domain amino terminal to FKBP-type peptidyl-prolyl isomerase
YPA_3278	PF04102	SlyX
YPA_3279	PF00254	FKBP-type peptidyl-prolyl cis-trans isomerase
YPA_3280	PF09526	YPA_3280
YPA_3281	PF00999	Sodium/hydrogen exchanger family
YPA_3281	PF02254	TrkA-N domain
YPA_3282	PF02525	Flavodoxin-like fold
YPA_3283	PF00005	ABC transporter
YPA_3284	PF00005	ABC transporter
YPA_3284	PF12848	ABC transporter
YPA_3285	PF00535	Glycosyl transferase family 2
YPA_3286	PF01075	Glycosyltransferase family 9 (heptosyltransferase)
YPA_3287	PF02668	Taurine catabolism dioxygenase TauD, TfdA family
YPA_3288	PF00528	Binding-protein-dependent transport system inner membrane component
YPA_3289	PF00005	ABC transporter
YPA_3290	PF04069	Substrate binding domain of ABC-type glycine betaine transport system
YPA_3291	PF01810	YPA_3291
YPA_3292	PF00561	alpha/beta hydrolase fold
YPA_3293	PF06794	Uncharacterised protein family (UPF0270)
YPA_3294	PF00485	Phosphoribulokinase / Uridine kinase family
YPA_3295	PF06836	YPA_3295
YPA_3296	PF02566	OsmC-like protein
YPA_3297	PF00027	Cyclic nucleotide-binding domain
YPA_3297	PF00325	Bacterial regulatory proteins, crp family
YPA_3298	PF12805	YPA_3298
YPA_3298	PF13515	YPA_3298
YPA_3299	PF00202	Aminotransferase class-III
YPA_3300	PF00117	Glutamine amidotransferase class-I
YPA_3301	PF05872	YPA_3301
YPA_3302	PF00160	Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
YPA_3303	PF02056	Family 4 glycosyl hydrolase
YPA_3303	PF11975	Family 4 glycosyl hydrolase C-terminal domain
YPA_3304	PF00356	Bacterial regulatory proteins, lacI family
YPA_3304	PF13377	Periplasmic binding protein-like domain
YPA_3305	PF00593	TonB dependent receptor
YPA_3305	PF07715	TonB-dependent Receptor Plug Domain
YPA_3306	PF07690	Major Facilitator Superfamily
YPA_3307	PF07969	Amidohydrolase family
YPA_3308	PF01077	Nitrite and sulphite reductase 4Fe-4S domain
YPA_3308	PF03460	Nitrite/Sulfite reductase ferredoxin-like half domain
YPA_3308	PF04324	BFD-like [2Fe-2S] binding domain
YPA_3308	PF07992	Pyridine nucleotide-disulphide oxidoreductase
YPA_3309	PF13806	Rieske-like [2Fe-2S] domain
YPA_3310	PF01226	Formate/nitrite transporter
YPA_3311	PF00590	Tetrapyrrole (Corrin/Porphyrin) Methylases
YPA_3311	PF10414	Sirohaem synthase dimerisation region
YPA_3311	PF13241	Putative NAD(P)-binding
YPA_3311	PF14824	Sirohaem biosynthesis protein central
YPA_3312	PF00579	tRNA synthetases class I (W and Y)
YPA_3313	PF13419	Haloacid dehalogenase-like hydrolase
YPA_3314	PF00834	Ribulose-phosphate 3 epimerase family
YPA_3315	PF02086	D12 class N6 adenine-specific DNA methyltransferase
YPA_3316	PF05036	Sporulation related domain
YPA_3317	PF01761	3-dehydroquinate synthase
YPA_3318	PF01202	Shikimate kinase
YPA_3319	PF00263	YPA_3319
YPA_3319	PF03958	Bacterial type II/III secretion system short domain
YPA_3321	PF10748	YPA_3321
YPA_3323	PF05137	YPA_3323
YPA_3324	PF11104	Type IV pilus assembly protein PilM;
YPA_3325	PF00905	Penicillin binding protein transpeptidase domain
YPA_3325	PF00912	Transglycosylase
YPA_3325	PF17092	YPA_3325
YPA_3326	PF00293	NUDIX domain
YPA_3327	PF07095	Intracellular growth attenuator protein IgaA
YPA_3328	PF13419	Haloacid dehalogenase-like hydrolase
YPA_3329	PF01479	S4 domain
YPA_3330	PF01430	Hsp33 protein
YPA_3331	PF01293	Phosphoenolpyruvate carboxykinase
YPA_3332	PF00512	His Kinase A (phospho-acceptor) domain
YPA_3332	PF00672	HAMP domain
YPA_3332	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
YPA_3333	PF00072	Response regulator receiver domain
YPA_3333	PF00486	Transcriptional regulatory protein, C terminal
YPA_3334	PF01272	Transcription elongation factor, GreA/GreB, C-term
YPA_3334	PF03449	Transcription elongation factor, N-terminal
YPA_3335	PF00575	S1 RNA binding domain
YPA_3335	PF09371	Tex-like protein N-terminal domain
YPA_3335	PF12836	Helix-hairpin-helix motif
YPA_3335	PF16921	YPA_3335
YPA_3336	PF04023	FeoA domain
YPA_3337	PF02421	Ferrous iron transport protein B
YPA_3337	PF07664	YPA_3337
YPA_3337	PF07670	Nucleoside recognition
YPA_3338	PF09012	FeoC like transcriptional regulator
YPA_3339	PF07338	Protein of unknown function (DUF1471)
YPA_3340	PF00561	alpha/beta hydrolase fold
YPA_3341	PF00156	Phosphoribosyl transferase domain
YPA_3342	PF01106	NifU-like domain
YPA_3342	PF01521	Iron-sulphur cluster biosynthesis
YPA_3343	PF02446	4-alpha-glucanotransferase
YPA_3344	PF00343	Carbohydrate phosphorylase
YPA_3346	PF00196	Bacterial regulatory proteins, luxR family
YPA_3347	PF00581	Rhodanese-like domain
YPA_3348	PF01694	Rhomboid family
YPA_3348	PF12122	Protein of unknown function (DUF3582)
YPA_3349	PF00455	YPA_3349
YPA_3349	PF08220	DeoR-like helix-turn-helix domain
YPA_3350	PF13518	Helix-turn-helix domain
YPA_3351	PF01695	IstB-like ATP binding protein
YPA_3352	PF00665	Integrase core domain
YPA_3352	PF02796	Helix-turn-helix domain of resolvase
YPA_3353	PF00665	Integrase core domain
YPA_3353	PF13276	YPA_3353
YPA_3354	PF00563	EAL domain
YPA_3354	PF00989	PAS fold
YPA_3354	PF00990	GGDEF domain
YPA_3354	PF05228	YPA_3354
YPA_3356	PF16576	YPA_3356
YPA_3357	PF00873	AcrB/AcrD/AcrF family
YPA_3358	PF07906	YPA_3358
YPA_3360	PF13018	YPA_3360
YPA_3361	PF12468	Type III secretion system leucine rich repeat protein
YPA_3361	PF14496	C-terminal novel E3 ligase, LRR-interacting
YPA_3362	PF12468	Type III secretion system leucine rich repeat protein
YPA_3363	PF01797	Transposase IS200 like
YPA_3364	PF12468	Type III secretion system leucine rich repeat protein
YPA_3364	PF14496	C-terminal novel E3 ligase, LRR-interacting
YPA_3366	PF03806	YPA_3366
YPA_3367	PF01546	Peptidase family M20/M25/M40
YPA_3367	PF07687	Peptidase dimerisation domain
YPA_3368	PF00593	TonB dependent receptor
YPA_3368	PF07715	TonB-dependent Receptor Plug Domain
YPA_3369	PF00109	Beta-ketoacyl synthase, N-terminal domain
YPA_3369	PF00501	AMP-binding enzyme
YPA_3369	PF00550	Phosphopantetheine attachment site
YPA_3369	PF02801	Beta-ketoacyl synthase, C-terminal domain
YPA_3370	PF00665	Integrase core domain
YPA_3370	PF02796	Helix-turn-helix domain of resolvase
YPA_3371	PF01695	IstB-like ATP binding protein
YPA_3372	PF00501	AMP-binding enzyme
YPA_3372	PF00550	Phosphopantetheine attachment site
YPA_3372	PF00668	Condensation domain
YPA_3373	PF00501	AMP-binding enzyme
YPA_3373	PF00550	Phosphopantetheine attachment site
YPA_3374	PF00501	AMP-binding enzyme
YPA_3374	PF00550	Phosphopantetheine attachment site
YPA_3374	PF00668	Condensation domain
YPA_3374	PF00975	Thioesterase domain
YPA_3374	PF08242	Methyltransferase domain
YPA_3375	PF01370	NAD dependent epimerase/dehydratase family
YPA_3376	PF01408	Oxidoreductase family, NAD-binding Rossmann fold
YPA_3377	PF00975	Thioesterase domain
YPA_3378	PF07690	Major Facilitator Superfamily
YPA_3379	PF00005	ABC transporter
YPA_3379	PF00664	ABC transporter transmembrane region
YPA_3380	PF00005	ABC transporter
YPA_3380	PF00664	ABC transporter transmembrane region
YPA_3383	PF02447	YPA_3383
YPA_3385	PF03797	Autotransporter beta-domain
YPA_3386	PF05954	Phage late control gene D protein (GPD)
YPA_3386	PF06715	Gp5 C-terminal repeat (3 copies)
YPA_3388	PF03527	YPA_3388
YPA_3388	PF05593	YPA_3388
YPA_3391	PF00939	Sodium:sulfate symporter transmembrane region
YPA_3392	PF00356	Bacterial regulatory proteins, lacI family
YPA_3392	PF13377	Periplasmic binding protein-like domain
YPA_3393	PF00150	Cellulase (glycosyl hydrolase family 5)
YPA_3394	PF00665	Integrase core domain
YPA_3394	PF13276	YPA_3394
YPA_3395	PF13518	Helix-turn-helix domain
YPA_3396	PF05947	YPA_3396
YPA_3397	PF06996	YPA_3397
YPA_3399	PF12790	Type VI secretion lipoprotein
YPA_3400	PF05936	YPA_3400
YPA_3401	PF09850	Uncharacterized protein conserved in bacteria (DUF2077)
YPA_3402	PF00004	ATPase family associated with various cellular activities (AAA)
YPA_3402	PF07724	AAA domain (Cdc48 subfamily)
YPA_3402	PF10431	C-terminal, D2-small domain, of ClpB protein
YPA_3403	PF02954	Bacterial regulatory protein, Fis family
YPA_3404	PF11319	YPA_3404
YPA_3405	PF06812	YPA_3405
YPA_3405	PF16989	YPA_3405
YPA_3406	PF06744	YPA_3406
YPA_3406	PF06761	YPA_3406
YPA_3406	PF14331	YPA_3406
YPA_3407	PF06812	YPA_3407
YPA_3408	PF12486	YPA_3408
YPA_3409	PF05954	Phage late control gene D protein (GPD)
YPA_3410	PF08786	Domain of unknown function (DUF1795)
YPA_3411	PF05488	PAAR motif
YPA_3411	PF05593	YPA_3411
YPA_3412	PF03527	YPA_3412
YPA_3412	PF14414	YPA_3412
YPA_3413	PF09346	SMI1 / KNR4 family (SUKH-1)
YPA_3414	PF08845	YPA_3414
YPA_3415	PF08845	YPA_3415
YPA_3416	PF01381	Helix-turn-helix
YPA_3417	PF12486	YPA_3417
YPA_3418	PF05954	Phage late control gene D protein (GPD)
YPA_3419	PF08786	Domain of unknown function (DUF1795)
YPA_3420	PF03527	YPA_3420
YPA_3420	PF05488	PAAR motif
YPA_3420	PF05593	YPA_3420
YPA_3422	PF01261	Xylose isomerase-like TIM barrel
YPA_3424	PF01695	IstB-like ATP binding protein
YPA_3425	PF00665	Integrase core domain
YPA_3425	PF02796	Helix-turn-helix domain of resolvase
YPA_3426	PF13673	Acetyltransferase (GNAT) domain
YPA_3427	PF00485	Phosphoribulokinase / Uridine kinase family
YPA_3428	PF02237	Biotin protein ligase C terminal domain
YPA_3428	PF03099	Biotin/lipoate A/B protein ligase family
YPA_3428	PF08279	HTH domain
YPA_3429	PF01565	FAD binding domain
YPA_3429	PF02873	UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain
YPA_3430	PF12724	Flavodoxin domain
YPA_3431	PF02386	Cation transport protein
YPA_3432	PF01205	Uncharacterized protein family UPF0029
YPA_3432	PF09186	Domain of unknown function (DUF1949)
YPA_3433	PF01797	Transposase IS200 like
YPA_3434	PF01205	Uncharacterized protein family UPF0029
YPA_3435	PF00557	Metallopeptidase family M24
YPA_3436	PF00378	Enoyl-CoA hydratase/isomerase family
YPA_3436	PF00725	3-hydroxyacyl-CoA dehydrogenase, C-terminal domain
YPA_3436	PF02737	3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
YPA_3437	PF00108	Thiolase, N-terminal domain
YPA_3437	PF02803	Thiolase, C-terminal domain
YPA_3438	PF00175	Oxidoreductase NAD-binding domain
YPA_3438	PF00970	Oxidoreductase FAD-binding domain
YPA_3439	PF01977	3-octaprenyl-4-hydroxybenzoate carboxy-lyase
YPA_3440	PF02357	Transcription termination factor nusG
YPA_3441	PF00490	Delta-aminolevulinic acid dehydratase
YPA_3442	PF01026	TatD related DNase
YPA_3443	PF01695	IstB-like ATP binding protein
YPA_3444	PF00665	Integrase core domain
YPA_3444	PF02796	Helix-turn-helix domain of resolvase
YPA_3446	PF13437	HlyD family secretion protein
YPA_3447	PF00005	ABC transporter
YPA_3447	PF00664	ABC transporter transmembrane region
YPA_3447	PF03412	Peptidase C39 family
YPA_3448	PF01797	Transposase IS200 like
YPA_3449	PF06005	Protein of unknown function (DUF904)
YPA_3450	PF00230	Major intrinsic protein
YPA_3451	PF00370	FGGY family of carbohydrate kinases, N-terminal domain
YPA_3451	PF02782	FGGY family of carbohydrate kinases, C-terminal domain
YPA_3452	PF03320	Bacterial fructose-1,6-bisphosphatase, glpX-encoded
YPA_3453	PF00175	Oxidoreductase NAD-binding domain
YPA_3453	PF00970	Oxidoreductase FAD-binding domain
YPA_3454	PF05656	YPA_3454
YPA_3455	PF07305	YPA_3455
YPA_3456	PF00121	Triosephosphate isomerase
YPA_3457	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
YPA_3457	PF03466	LysR substrate binding domain
YPA_3458	PF02585	GlcNAc-PI de-N-acetylase
YPA_3459	PF03737	Demethylmenaquinone methyltransferase
YPA_3460	PF00939	Sodium:sulfate symporter transmembrane region
YPA_3461	PF13531	Bacterial extracellular solute-binding protein
YPA_3462	PF13531	Bacterial extracellular solute-binding protein
YPA_3463	PF00365	Phosphofructokinase
YPA_3464	PF01545	Cation efflux family
YPA_3464	PF16916	YPA_3464
YPA_3465	PF04754	YPA_3465
YPA_3467	PF00589	Phage integrase family
YPA_3468	PF07813	LTXXQ motif family protein
YPA_3469	PF00072	Response regulator receiver domain
YPA_3469	PF00486	Transcriptional regulatory protein, C terminal
YPA_3470	PF00512	His Kinase A (phospho-acceptor) domain
YPA_3470	PF00672	HAMP domain
YPA_3470	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
YPA_3470	PF16527	YPA_3470
YPA_3471	PF01035	6-O-methylguanine DNA methyltransferase, DNA binding domain
YPA_3471	PF02805	Metal binding domain of Ada
YPA_3471	PF02870	6-O-methylguanine DNA methyltransferase, ribonuclease-like domain
YPA_3471	PF12833	Helix-turn-helix domain
YPA_3472	PF00588	SpoU rRNA Methylase family
YPA_3473	PF00132	Bacterial transferase hexapeptide (six repeats)
YPA_3473	PF06426	Serine acetyltransferase, N-terminal
YPA_3474	PF01210	NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus
YPA_3474	PF07479	NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus
YPA_3475	PF02556	Preprotein translocase subunit SecB
YPA_3476	PF00462	Glutaredoxin
YPA_3477	PF00581	Rhodanese-like domain
YPA_3478	PF01676	Metalloenzyme superfamily
YPA_3478	PF06415	BPG-independent PGAM N-terminus (iPGM_N)
YPA_3479	PF01551	Peptidase family M23
YPA_3480	PF04748	Divergent polysaccharide deacetylase
YPA_3481	PF04748	Divergent polysaccharide deacetylase
YPA_3482	PF00107	Zinc-binding dehydrogenase
YPA_3482	PF08240	Alcohol dehydrogenase GroES-like domain
YPA_3483	PF00155	Aminotransferase class I and II
YPA_3484	PF01370	NAD dependent epimerase/dehydratase family
YPA_3485	PF01075	Glycosyltransferase family 9 (heptosyltransferase)
YPA_3486	PF01075	Glycosyltransferase family 9 (heptosyltransferase)
YPA_3487	PF00534	Glycosyl transferases group 1
YPA_3487	PF04413	3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase)
YPA_3488	PF00535	Glycosyl transferase family 2
YPA_3489	PF01467	Cytidylyltransferase
YPA_3490	PF01149	Formamidopyrimidine-DNA glycosylase N-terminal domain
YPA_3490	PF06827	Zinc finger found in FPG and IleRS
YPA_3490	PF06831	Formamidopyrimidine-DNA glycosylase H2TH domain
YPA_3491	PF00471	Ribosomal protein L33
YPA_3492	PF00830	Ribosomal L28 family
YPA_3493	PF04002	RadC-like JAB domain
YPA_3494	PF02441	Flavoprotein
YPA_3494	PF04127	DNA / pantothenate metabolism flavoprotein
YPA_3495	PF00692	dUTPase
YPA_3496	PF00440	Bacterial regulatory proteins, tetR family
YPA_3497	PF00156	Phosphoribosyl transferase domain
YPA_3498	PF01138	3' exoribonuclease family, domain 1
YPA_3498	PF03725	3' exoribonuclease family, domain 2
YPA_3499	PF03755	YPA_3499
YPA_3499	PF08340	YPA_3499
YPA_3500	PF03458	YPA_3500
YPA_3501	PF01653	NAD-dependent DNA ligase adenylation domain
YPA_3501	PF03120	NAD-dependent DNA ligase OB-fold domain
YPA_3502	PF00625	Guanylate kinase
YPA_3503	PF01192	RNA polymerase Rpb6
YPA_3504	PF02824	TGS domain
YPA_3504	PF04607	Region found in RelA / SpoT proteins
YPA_3504	PF13291	ACT domain
YPA_3504	PF13328	HD domain
YPA_3505	PF00588	SpoU rRNA Methylase family
YPA_3505	PF12105	SpoU, rRNA methylase, C-terminal
YPA_3506	PF00270	DEAD/DEAH box helicase
YPA_3506	PF00271	Helicase conserved C-terminal domain
YPA_3506	PF17191	YPA_3506
YPA_3507	PF03616	YPA_3507
YPA_3508	PF00860	Permease family
YPA_3510	PF00583	Acetyltransferase (GNAT) family
YPA_3510	PF09500	Putative thioesterase (yiiD_Cterm)
YPA_3511	PF00665	Integrase core domain
YPA_3511	PF02796	Helix-turn-helix domain of resolvase
YPA_3512	PF01695	IstB-like ATP binding protein
YPA_3513	PF02580	D-Tyr-tRNA(Tyr) deacylase
YPA_3514	PF03631	YPA_3514
YPA_3515	PF13419	Haloacid dehalogenase-like hydrolase
YPA_3516	PF00009	Elongation factor Tu GTP binding domain
YPA_3516	PF00679	Elongation factor G C-terminus
YPA_3516	PF03144	Elongation factor Tu domain 2
YPA_3517	PF00120	Glutamine synthetase, catalytic domain
YPA_3517	PF03951	Glutamine synthetase, beta-Grasp domain
YPA_3518	PF01797	Transposase IS200 like
YPA_3519	PF00512	His Kinase A (phospho-acceptor) domain
YPA_3519	PF00989	PAS fold
YPA_3519	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
YPA_3520	PF00072	Response regulator receiver domain
YPA_3520	PF00158	Sigma-54 interaction domain
YPA_3520	PF02954	Bacterial regulatory protein, Fis family
YPA_3521	PF04055	Radical SAM superfamily
YPA_3521	PF06969	HemN C-terminal domain
YPA_3522	PF04220	YPA_3522
YPA_3523	PF01926	50S ribosome-binding GTPase
YPA_3524	PF01797	Transposase IS200 like
YPA_3525	PF00476	DNA polymerase family A
YPA_3525	PF01367	5'-3' exonuclease, C-terminal SAM fold
YPA_3525	PF01612	3'-5' exonuclease
YPA_3525	PF02739	5'-3' exonuclease, N-terminal resolvase-like domain
YPA_3526	PF01323	DSBA-like thioredoxin domain
YPA_3527	PF01636	Phosphotransferase enzyme family
YPA_3528	PF06288	Protein of unknown function (DUF1040)
YPA_3529	PF12804	MobA-like NTP transferase domain
YPA_3530	PF03205	Molybdopterin guanine dinucleotide synthesis protein B
YPA_3531	PF00872	YPA_3531
YPA_3533	PF00665	Integrase core domain
YPA_3533	PF02796	Helix-turn-helix domain of resolvase
YPA_3534	PF01695	IstB-like ATP binding protein
YPA_3536	PF00293	NUDIX domain
YPA_3537	PF01043	SecA preprotein cross-linking domain
YPA_3537	PF02810	SEC-C motif
YPA_3537	PF07516	SecA Wing and Scaffold domain
YPA_3537	PF07517	SecA DEAD-like domain
YPA_3538	PF06558	YPA_3538
YPA_3539	PF05258	YPA_3539
YPA_3540	PF03331	UDP-3-O-acyl N-acetylglycosamine deacetylase
YPA_3541	PF00091	Tubulin/FtsZ family, GTPase domain
YPA_3541	PF12327	FtsZ family, C-terminal domain
YPA_3542	PF02491	SHS2 domain inserted in FTSA
YPA_3542	PF14450	Cell division protein FtsA
YPA_3543	PF03799	Cell division protein FtsQ
YPA_3543	PF08478	POTRA domain, FtsQ-type
YPA_3544	PF01820	D-ala D-ala ligase N-terminus
YPA_3544	PF07478	D-ala D-ala ligase C-terminus
YPA_3545	PF01225	Mur ligase family, catalytic domain
YPA_3545	PF02875	Mur ligase family, glutamate ligase domain
YPA_3545	PF08245	Mur ligase middle domain
YPA_3546	PF03033	Glycosyltransferase family 28 N-terminal domain
YPA_3546	PF04101	Glycosyltransferase family 28 C-terminal domain
YPA_3547	PF01098	YPA_3547
YPA_3548	PF02875	Mur ligase family, glutamate ligase domain
YPA_3548	PF08245	Mur ligase middle domain
YPA_3549	PF00953	Glycosyl transferase family 4
YPA_3549	PF10555	Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1
YPA_3550	PF01225	Mur ligase family, catalytic domain
YPA_3550	PF02875	Mur ligase family, glutamate ligase domain
YPA_3550	PF08245	Mur ligase middle domain
YPA_3551	PF01225	Mur ligase family, catalytic domain
YPA_3551	PF02875	Mur ligase family, glutamate ligase domain
YPA_3551	PF08245	Mur ligase middle domain
YPA_3552	PF00905	Penicillin binding protein transpeptidase domain
YPA_3552	PF03717	Penicillin-binding Protein dimerisation domain
YPA_3553	PF04999	YPA_3553
YPA_3554	PF01795	MraW methylase family
YPA_3555	PF02381	MraZ protein
YPA_3556	PF06610	YPA_3556
YPA_3557	PF00356	Bacterial regulatory proteins, lacI family
YPA_3557	PF00532	Periplasmic binding proteins and sugar binding domain of LacI family
YPA_3558	PF01797	Transposase IS200 like
YPA_3559	PF01842	ACT domain
YPA_3559	PF10369	Small subunit of acetolactate synthase
YPA_3560	PF00205	Thiamine pyrophosphate enzyme, central domain
YPA_3560	PF02775	Thiamine pyrophosphate enzyme, C-terminal TPP binding domain
YPA_3560	PF02776	Thiamine pyrophosphate enzyme, N-terminal TPP binding domain
YPA_3561	PF00501	AMP-binding enzyme
YPA_3562	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
YPA_3562	PF03466	LysR substrate binding domain
YPA_3563	PF01797	Transposase IS200 like
YPA_3564	PF00682	HMGL-like
YPA_3564	PF08502	LeuA allosteric (dimerisation) domain
YPA_3565	PF00180	Isocitrate/isopropylmalate dehydrogenase
YPA_3566	PF00330	Aconitase family (aconitate hydratase)
YPA_3567	PF00694	Aconitase C-terminal domain
YPA_3569	PF00665	Integrase core domain
YPA_3569	PF02796	Helix-turn-helix domain of resolvase
YPA_3570	PF01695	IstB-like ATP binding protein
YPA_3571	PF07690	Major Facilitator Superfamily
YPA_3572	PF00496	Bacterial extracellular solute-binding proteins, family 5 Middle
YPA_3572	PF12793	YPA_3572
YPA_3573	PF13343	Bacterial extracellular solute-binding protein
YPA_3574	PF00528	Binding-protein-dependent transport system inner membrane component
YPA_3575	PF00005	ABC transporter
YPA_3576	PF09335	YPA_3576
YPA_3577	PF00136	DNA polymerase family B
YPA_3577	PF03104	DNA polymerase family B, exonuclease domain
YPA_3578	PF00176	SNF2 family N-terminal domain
YPA_3578	PF00271	Helicase conserved C-terminal domain
YPA_3578	PF12137	RNA polymerase recycling family C-terminal
YPA_3580	PF06744	YPA_3580
YPA_3580	PF06761	YPA_3580
YPA_3580	PF14331	YPA_3580
YPA_3581	PF00691	OmpA family
YPA_3581	PF09850	Uncharacterized protein conserved in bacteria (DUF2077)
YPA_3582	PF05936	YPA_3582
YPA_3583	PF12790	Type VI secretion lipoprotein
YPA_3584	PF13665	YPA_3584
YPA_3585	PF12059	YPA_3585
YPA_3586	PF00805	Pentapeptide repeats (8 copies)
YPA_3586	PF13599	Pentapeptide repeats (9 copies)
YPA_3587	PF13599	Pentapeptide repeats (9 copies)
YPA_3588	PF09937	YPA_3588
YPA_3589	PF05954	Phage late control gene D protein (GPD)
YPA_3590	PF00004	ATPase family associated with various cellular activities (AAA)
YPA_3590	PF02861	Clp amino terminal domain
YPA_3590	PF07724	AAA domain (Cdc48 subfamily)
YPA_3591	PF06996	YPA_3591
YPA_3592	PF05947	YPA_3592
YPA_3593	PF04965	Gene 25-like lysozyme
YPA_3594	PF05638	Protein of unknown function (DUF796)
YPA_3595	PF05943	YPA_3595
YPA_3596	PF00665	Integrase core domain
YPA_3596	PF02796	Helix-turn-helix domain of resolvase
YPA_3597	PF01695	IstB-like ATP binding protein
YPA_3599	PF13276	YPA_3599
YPA_3599	PF13683	YPA_3599
YPA_3600	PF01527	Transposase
YPA_3601	PF01808	AICARFT/IMPCHase bienzyme
YPA_3601	PF02142	MGS-like domain
YPA_3602	PF01071	Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain
YPA_3602	PF02843	Phosphoribosylglycinamide synthetase, C domain
YPA_3602	PF02844	Phosphoribosylglycinamide synthetase, N domain
YPA_3603	PF07356	YPA_3603
YPA_3604	PF00216	Bacterial DNA-binding protein
YPA_3605	PF04222	Protein of unknown function (DUF416)
YPA_3606	PF04493	Endonuclease V
YPA_3607	PF01208	Uroporphyrinogen decarboxylase (URO-D)
YPA_3609	PF00293	NUDIX domain
YPA_3609	PF09297	NADH pyrophosphatase zinc ribbon domain
YPA_3610	PF04353	Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ
YPA_3611	PF01964	ThiC family
YPA_3611	PF13667	ThiC-associated domain
YPA_3612	PF02581	Thiamine monophosphate synthase/TENI
YPA_3613	PF00899	ThiF family
YPA_3614	PF02597	ThiS family
YPA_3615	PF05690	Thiazole biosynthesis protein ThiG
YPA_3616	PF04055	Radical SAM superfamily
YPA_3616	PF06968	Biotin and Thiamin Synthesis associated domain
YPA_3617	PF01797	Transposase IS200 like
YPA_3618	PF00623	RNA polymerase Rpb1, domain 2
YPA_3618	PF04983	RNA polymerase Rpb1, domain 3
YPA_3618	PF04997	RNA polymerase Rpb1, domain 1
YPA_3618	PF04998	RNA polymerase Rpb1, domain 5
YPA_3618	PF05000	RNA polymerase Rpb1, domain 4
YPA_3619	PF00562	RNA polymerase Rpb2, domain 6
YPA_3619	PF04560	RNA polymerase Rpb2, domain 7
YPA_3619	PF04561	RNA polymerase Rpb2, domain 2
YPA_3619	PF04563	RNA polymerase beta subunit
YPA_3619	PF04565	RNA polymerase Rpb2, domain 3
YPA_3619	PF10385	RNA polymerase beta subunit external 1 domain
YPA_3620	PF00542	Ribosomal protein L7/L12 C-terminal domain
YPA_3620	PF16320	YPA_3620
YPA_3621	PF00466	Ribosomal protein L10
YPA_3622	PF00687	Ribosomal protein L1p/L10e family
YPA_3623	PF00298	Ribosomal protein L11, RNA binding domain
YPA_3623	PF03946	Ribosomal protein L11, N-terminal domain
YPA_3624	PF00467	KOW motif
YPA_3624	PF02357	Transcription termination factor nusG
YPA_3625	PF00584	SecE/Sec61-gamma subunits of protein translocation complex
YPA_3626	PF00009	Elongation factor Tu GTP binding domain
YPA_3626	PF03143	Elongation factor Tu C-terminal domain
YPA_3626	PF03144	Elongation factor Tu domain 2
YPA_3628	PF01695	IstB-like ATP binding protein
YPA_3629	PF00665	Integrase core domain
YPA_3629	PF02796	Helix-turn-helix domain of resolvase
YPA_3631	PF01408	Oxidoreductase family, NAD-binding Rossmann fold
YPA_3632	PF02311	AraC-like ligand binding domain
YPA_3632	PF12833	Helix-turn-helix domain
YPA_3633	PF05025	RbsD / FucU transport protein family
YPA_3634	PF00294	pfkB family carbohydrate kinase
YPA_3635	PF01791	DeoC/LacD family aldolase
YPA_3636	PF03358	NADPH-dependent FMN reductase
YPA_3637	PF09084	NMT1/THI5 like
YPA_3638	PF00296	Luciferase-like monooxygenase
YPA_3639	PF00528	Binding-protein-dependent transport system inner membrane component
YPA_3640	PF00005	ABC transporter
YPA_3641	PF04221	RelB antitoxin
YPA_3642	PF00860	Permease family
YPA_3643	PF00999	Sodium/hydrogen exchanger family
YPA_3645	PF03279	YPA_3645
YPA_3646	PF13407	Periplasmic binding protein domain
YPA_3647	PF00005	ABC transporter
YPA_3648	PF02653	YPA_3648
YPA_3649	PF02653	YPA_3649
YPA_3650	PF00370	FGGY family of carbohydrate kinases, N-terminal domain
YPA_3650	PF02782	FGGY family of carbohydrate kinases, C-terminal domain
YPA_3651	PF01380	SIS domain
YPA_3652	PF02798	Glutathione S-transferase, N-terminal domain
YPA_3652	PF13410	Glutathione S-transferase, C-terminal domain
YPA_3653	PF13449	Esterase-like activity of phytase
YPA_3655	PF01797	Transposase IS200 like
YPA_3656	PF00313	'Cold-shock' DNA-binding domain
YPA_3657	PF00313	'Cold-shock' DNA-binding domain
YPA_3659	PF05433	YPA_3659
YPA_3660	PF00753	Metallo-beta-lactamase superfamily
YPA_3661	PF03446	NAD binding domain of 6-phosphogluconate dehydrogenase
YPA_3661	PF14833	NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase
YPA_3662	PF02627	Carboxymuconolactone decarboxylase family
YPA_3663	PF07690	Major Facilitator Superfamily
YPA_3664	PF00392	Bacterial regulatory proteins, gntR family
YPA_3664	PF07729	FCD domain
YPA_3666	PF02954	Bacterial regulatory protein, Fis family
YPA_3667	PF01207	Dihydrouridine synthase (Dus)
YPA_3668	PF06325	Ribosomal protein L11 methyltransferase (PrmA)
YPA_3669	PF00474	Sodium:solute symporter family
YPA_3670	PF06196	YPA_3670
YPA_3671	PF00289	Carbamoyl-phosphate synthase L chain, N-terminal domain
YPA_3671	PF02785	Biotin carboxylase C-terminal domain
YPA_3671	PF02786	Carbamoyl-phosphate synthase L chain, ATP binding domain
YPA_3672	PF00364	Biotin-requiring enzyme
YPA_3673	PF01220	Dehydroquinase class II
YPA_3674	PF01794	YPA_3674
YPA_3675	PF00174	Oxidoreductase molybdopterin binding domain
YPA_3676	PF00107	Zinc-binding dehydrogenase
YPA_3676	PF08240	Alcohol dehydrogenase GroES-like domain
YPA_3677	PF00563	EAL domain
YPA_3677	PF00990	GGDEF domain
YPA_3677	PF17157	YPA_3677
YPA_3678	PF06723	MreB/Mbl protein
YPA_3679	PF04085	rod shape-determining protein MreC
YPA_3680	PF04093	YPA_3680
YPA_3681	PF02545	Maf-like protein
YPA_3682	PF00575	S1 RNA binding domain
YPA_3682	PF10150	Ribonuclease E/G family
YPA_3683	PF13116	YPA_3683
YPA_3683	PF13502	YPA_3683
YPA_3684	PF00795	Carbon-nitrogen hydrolase
YPA_3685	PF01523	Putative modulator of DNA gyrase
YPA_3687	PF00782	Dual specificity phosphatase, catalytic domain
YPA_3688	PF10828	YPA_3688
YPA_3689	PF13539	D-alanyl-D-alanine carboxypeptidase
YPA_3690	PF16083	YPA_3690
YPA_3691	PF03534	Salmonella virulence plasmid 65kDa B protein
YPA_3691	PF12255	Insecticide toxin TcdB middle/C-terminal region
YPA_3691	PF12256	Insecticide toxin TcdB middle/N-terminal region
YPA_3694	PF03538	Salmonella virulence plasmid 28
YPA_3695	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
YPA_3696	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
YPA_3696	PF03466	LysR substrate binding domain
YPA_3697	PF07869	YPA_3697
YPA_3698	PF13437	HlyD family secretion protein
YPA_3698	PF13533	Biotin-lipoyl like
YPA_3699	PF04632	YPA_3699
YPA_3700	PF00171	Aldehyde dehydrogenase family
YPA_3701	PF00171	Aldehyde dehydrogenase family
YPA_3702	PF00545	ribonuclease
YPA_3703	PF01337	Barstar (barnase inhibitor)
YPA_3704	PF04751	Protein of unknown function (DUF615)
YPA_3705	PF01523	Putative modulator of DNA gyrase
YPA_3707	PF07361	Cytochrome b562
YPA_3708	PF01272	Transcription elongation factor, GreA/GreB, C-term
YPA_3708	PF14760	Rnk N-terminus
YPA_3709	PF00128	Alpha amylase, catalytic domain
YPA_3709	PF11941	Domain of unknown function (DUF3459)
YPA_3710	PF00367	phosphotransferase system, EIIB
YPA_3710	PF02378	Phosphotransferase system, EIIC
YPA_3711	PF00356	Bacterial regulatory proteins, lacI family
YPA_3711	PF13377	Periplasmic binding protein-like domain
YPA_3712	PF16743	YPA_3712
YPA_3713	PF01042	Endoribonuclease L-PSP
YPA_3714	PF01948	Aspartate carbamoyltransferase regulatory chain, allosteric domain
YPA_3714	PF02748	Aspartate carbamoyltransferase regulatory chain, metal binding domain
YPA_3715	PF00185	Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain
YPA_3715	PF02729	Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain
YPA_3716	PF00381	PTS HPr component phosphorylation site
YPA_3717	PF03668	YPA_3717
YPA_3718	PF00359	Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2
YPA_3719	PF02482	Sigma 54 modulation protein / S30EA ribosomal protein
YPA_3720	PF02482	Sigma 54 modulation protein / S30EA ribosomal protein
YPA_3721	PF00309	YPA_3721
YPA_3721	PF04552	Sigma-54, DNA binding domain
YPA_3721	PF04963	Sigma-54 factor, core binding domain
YPA_3722	PF00005	ABC transporter
YPA_3722	PF12399	Branched-chain amino acid ATP-binding cassette transporter
YPA_3723	PF03968	OstA-like protein
YPA_3724	PF06835	Lipopolysaccharide-assembly, LptC-related
YPA_3725	PF08282	haloacid dehalogenase-like hydrolase
YPA_3726	PF00571	CBS domain
YPA_3726	PF01380	SIS domain
YPA_3727	PF01699	Sodium/calcium exchanger protein
YPA_3728	PF00005	ABC transporter
YPA_3729	PF02405	YPA_3729
YPA_3730	PF02470	YPA_3730
YPA_3731	PF05494	Toluene tolerance, Ttg2
YPA_3732	PF13466	STAS domain
YPA_3733	PF01722	BolA-like protein
YPA_3734	PF00275	EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)
YPA_3735	PF13180	PDZ domain
YPA_3735	PF13365	Trypsin-like peptidase domain
YPA_3736	PF01797	Transposase IS200 like
YPA_3737	PF00595	PDZ domain (Also known as DHR or GLGF)
YPA_3737	PF13180	PDZ domain
YPA_3737	PF13365	Trypsin-like peptidase domain
YPA_3738	PF06295	YPA_3738
YPA_3739	PF03969	AFG1-like ATPase
YPA_3740	PF00572	Ribosomal protein L13
YPA_3741	PF00380	Ribosomal protein S9/S16
YPA_3742	PF00043	Glutathione S-transferase, C-terminal domain
YPA_3742	PF02798	Glutathione S-transferase, N-terminal domain
YPA_3743	PF04386	Stringent starvation protein B
YPA_3745	PF07992	Pyridine nucleotide-disulphide oxidoreductase
YPA_3745	PF14691	Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster
YPA_3746	PF00310	Glutamine amidotransferases class-II
YPA_3746	PF01493	GXGXG motif
YPA_3746	PF01645	Conserved region in glutamate synthase
YPA_3746	PF04898	Glutamate synthase central domain
YPA_3747	PF04055	Radical SAM superfamily
YPA_3747	PF16199	YPA_3747
YPA_3748	PF00072	Response regulator receiver domain
YPA_3748	PF00512	His Kinase A (phospho-acceptor) domain
YPA_3748	PF00989	PAS fold
YPA_3748	PF01627	Hpt domain
YPA_3748	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
YPA_3750	PF00912	Transglycosylase
YPA_3751	PF04972	BON domain
YPA_3752	PF13580	SIS domain
YPA_3753	PF02021	Uncharacterised protein family UPF0102
YPA_3754	PF04348	LppC putative lipoprotein
YPA_3755	PF00590	Tetrapyrrole (Corrin/Porphyrin) Methylases
YPA_3756	PF02678	Pirin
YPA_3757	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
YPA_3757	PF03466	LysR substrate binding domain
YPA_3758	PF13409	Glutathione S-transferase, N-terminal domain
YPA_3758	PF13410	Glutathione S-transferase, C-terminal domain
YPA_3759	PF01695	IstB-like ATP binding protein
YPA_3760	PF00665	Integrase core domain
YPA_3760	PF02796	Helix-turn-helix domain of resolvase
YPA_3761	PF13518	Helix-turn-helix domain
YPA_3762	PF00665	Integrase core domain
YPA_3762	PF13276	YPA_3762
YPA_3764	PF06092	YPA_3764
YPA_3766	PF01266	FAD dependent oxidoreductase
YPA_3766	PF16901	YPA_3766
YPA_3767	PF00343	Carbohydrate phosphorylase
YPA_3768	PF00534	Glycosyl transferases group 1
YPA_3768	PF08323	Starch synthase catalytic domain
YPA_3769	PF00483	Nucleotidyl transferase
YPA_3770	PF00128	Alpha amylase, catalytic domain
YPA_3770	PF02922	Carbohydrate-binding module 48 (Isoamylase N-terminal domain)
YPA_3771	PF00128	Alpha amylase, catalytic domain
YPA_3771	PF02806	Alpha amylase, C-terminal all-beta domain
YPA_3771	PF02922	Carbohydrate-binding module 48 (Isoamylase N-terminal domain)
YPA_3772	PF06580	YPA_3772
YPA_3772	PF07694	5TMR of 5TMR-LYT
YPA_3773	PF01476	LysM domain
YPA_3773	PF02369	Bacterial Ig-like domain (group 1)
YPA_3773	PF11924	Protein of unknown function (DUF3442)
YPA_3777	PF01118	Semialdehyde dehydrogenase, NAD binding domain
YPA_3777	PF02774	Semialdehyde dehydrogenase, dimerisation domain
YPA_3778	PF01914	YPA_3778
YPA_3782	PF01202	Shikimate kinase
YPA_3783	PF02447	YPA_3783
YPA_3784	PF00356	Bacterial regulatory proteins, lacI family
YPA_3784	PF00532	Periplasmic binding proteins and sugar binding domain of LacI family
YPA_3785	PF02678	Pirin
YPA_3786	PF00072	Response regulator receiver domain
YPA_3786	PF00486	Transcriptional regulatory protein, C terminal
YPA_3787	PF00294	pfkB family carbohydrate kinase
YPA_3788	PF01116	Fructose-bisphosphate aldolase class-II
YPA_3789	PF07385	Protein of unknown function (DUF1498)
YPA_3790	PF13407	Periplasmic binding protein domain
YPA_3791	PF02653	YPA_3791
YPA_3792	PF00005	ABC transporter
YPA_3793	PF00072	Response regulator receiver domain
YPA_3793	PF00512	His Kinase A (phospho-acceptor) domain
YPA_3793	PF00672	HAMP domain
YPA_3793	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
YPA_3793	PF12860	YPA_3793
YPA_3794	PF03486	HI0933-like protein
YPA_3795	PF01384	YPA_3795
YPA_3796	PF01797	Transposase IS200 like
YPA_3797	PF10625	YPA_3797
YPA_3798	PF00582	Universal stress protein family
YPA_3799	PF00208	Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
YPA_3799	PF02812	Glu/Leu/Phe/Val dehydrogenase, dimerisation domain
YPA_3800	PF08548	Peptidase M10 serralysin C terminal
YPA_3801	PF04445	Putative SAM-dependent methyltransferase
YPA_3802	PF01432	Peptidase family M3
YPA_3804	PF04378	Ribosomal RNA small subunit methyltransferase D, RsmJ
YPA_3805	PF02852	Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain
YPA_3805	PF07992	Pyridine nucleotide-disulphide oxidoreductase
YPA_3806	PF05651	YPA_3806
YPA_3806	PF13556	PucR C-terminal helix-turn-helix domain
YPA_3807	PF02447	YPA_3807
YPA_3808	PF02595	Glycerate kinase family
YPA_3809	PF06092	YPA_3809
YPA_3810	PF06092	YPA_3810
YPA_3811	PF11692	YPA_3811
YPA_3812	PF03212	Pertactin
YPA_3812	PF03797	Autotransporter beta-domain
YPA_3813	PF03631	YPA_3813
YPA_3814	PF02611	CDP-diacylglycerol pyrophosphatase
YPA_3815	PF05170	YPA_3815
YPA_3816	PF00563	EAL domain
YPA_3817	PF01361	Tautomerase enzyme
YPA_3818	PF00294	pfkB family carbohydrate kinase
YPA_3819	PF00675	Insulinase (Peptidase family M16)
YPA_3819	PF05193	Peptidase M16 inactive domain
YPA_3820	PF00375	Sodium:dicarboxylate symporter family
YPA_3821	PF00754	F5/8 type C domain
YPA_3822	PF06917	Periplasmic pectate lyase
YPA_3823	PF06178	Oligogalacturonate-specific porin protein (KdgM)
YPA_3824	PF00563	EAL domain
YPA_3824	PF00990	GGDEF domain
YPA_3824	PF17154	YPA_3824
YPA_3825	PF01270	Glycosyl hydrolases family 8
YPA_3826	PF00005	ABC transporter
YPA_3826	PF08352	Oligopeptide/dipeptide transporter, C-terminal region
YPA_3827	PF00005	ABC transporter
YPA_3827	PF08352	Oligopeptide/dipeptide transporter, C-terminal region
YPA_3828	PF00528	Binding-protein-dependent transport system inner membrane component
YPA_3828	PF12911	YPA_3828
YPA_3829	PF00528	Binding-protein-dependent transport system inner membrane component
YPA_3830	PF00496	Bacterial extracellular solute-binding proteins, family 5 Middle
YPA_3831	PF03865	Haemolysin secretion/activation protein ShlB/FhaC/HecB
YPA_3831	PF08479	POTRA domain, ShlB-type
YPA_3831	PF17287	YPA_3831
YPA_3832	PF05860	haemagglutination activity domain
YPA_3833	PF01797	Transposase IS200 like
YPA_3834	PF07690	Major Facilitator Superfamily
YPA_3835	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
YPA_3835	PF07730	Histidine kinase
YPA_3836	PF01695	IstB-like ATP binding protein
YPA_3837	PF00665	Integrase core domain
YPA_3837	PF02796	Helix-turn-helix domain of resolvase
YPA_3838	PF00005	ABC transporter
YPA_3839	PF02661	Fic/DOC family
YPA_3839	PF13776	YPA_3839
YPA_3840	PF01381	Helix-turn-helix
YPA_3840	PF13521	AAA domain
YPA_3841	PF13481	AAA domain
YPA_3841	PF13541	Subunit ChlI of Mg-chelatase
YPA_3842	PF12710	haloacid dehalogenase-like hydrolase
YPA_3843	PF10144	YPA_3843
YPA_3844	PF01048	Phosphorylase superfamily
YPA_3845	PF01676	Metalloenzyme superfamily
YPA_3846	PF00591	Glycosyl transferase family, a/b domain
YPA_3846	PF07831	Pyrimidine nucleoside phosphorylase C-terminal domain
YPA_3847	PF00591	Glycosyl transferase family, a/b domain
YPA_3847	PF02885	Glycosyl transferase family, helical bundle domain
YPA_3848	PF01791	DeoC/LacD family aldolase
YPA_3849	PF01773	Na+ dependent nucleoside transporter N-terminus
YPA_3849	PF07662	Na+ dependent nucleoside transporter C-terminus
YPA_3849	PF07670	Nucleoside recognition
YPA_3850	PF01026	TatD related DNase
YPA_3851	PF01734	Patatin-like phospholipase
YPA_3852	PF07043	YPA_3852
YPA_3853	PF04972	BON domain
YPA_3854	PF00009	Elongation factor Tu GTP binding domain
YPA_3854	PF03144	Elongation factor Tu domain 2
YPA_3854	PF16658	YPA_3854
YPA_3855	PF00583	Acetyltransferase (GNAT) family
YPA_3856	PF03603	DNA polymerase III psi subunit
YPA_3857	PF05175	Methyltransferase small domain
YPA_3857	PF08468	Methyltransferase small domain N-terminal
YPA_3859	PF07256	YPA_3859
YPA_3860	PF00990	GGDEF domain
YPA_3861	PF01095	Pectinesterase
YPA_3864	PF00873	AcrB/AcrD/AcrF family
YPA_3865	PF16576	YPA_3865
YPA_3866	PF06305	YPA_3866
YPA_3867	PF04932	YPA_3867
YPA_3868	PF01075	Glycosyltransferase family 9 (heptosyltransferase)
YPA_3869	PF00370	FGGY family of carbohydrate kinases, N-terminal domain
YPA_3869	PF02782	FGGY family of carbohydrate kinases, C-terminal domain
YPA_3870	PF04198	Putative sugar-binding domain
YPA_3871	PF00325	Bacterial regulatory proteins, crp family
YPA_3873	PF00005	ABC transporter
YPA_3874	PF02653	YPA_3874
YPA_3875	PF02653	YPA_3875
YPA_3876	PF13407	Periplasmic binding protein domain
YPA_3877	PF01791	DeoC/LacD family aldolase
YPA_3878	PF03992	Antibiotic biosynthesis monooxygenase
YPA_3879	PF10696	YPA_3879
YPA_3880	PF00359	Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2
YPA_3880	PF00381	PTS HPr component phosphorylation site
YPA_3880	PF00391	PEP-utilising enzyme, mobile domain
YPA_3880	PF02896	PEP-utilising enzyme, TIM barrel domain
YPA_3880	PF05524	PEP-utilising enzyme, N-terminal
YPA_3881	PF02378	Phosphotransferase system, EIIC
YPA_3882	PF02302	PTS system, Lactose/Cellobiose specific IIB subunit
YPA_3883	PF02302	PTS system, Lactose/Cellobiose specific IIB subunit
YPA_3884	PF12833	Helix-turn-helix domain
YPA_3886	PF05987	YPA_3886
YPA_3887	PF01435	Peptidase family M48
YPA_3888	PF09983	YPA_3888
YPA_3888	PF11795	YPA_3888
YPA_3889	PF13558	Putative exonuclease SbcCD, C subunit
YPA_3892	PF13589	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
YPA_3893	PF01555	DNA methylase
YPA_3896	PF10117	YPA_3896
YPA_3897	PF07728	AAA domain (dynein-related subfamily)
YPA_3898	PF00665	Integrase core domain
YPA_3898	PF02796	Helix-turn-helix domain of resolvase
YPA_3899	PF01695	IstB-like ATP binding protein
YPA_3901	PF07338	Protein of unknown function (DUF1471)
YPA_3902	PF00441	Acyl-CoA dehydrogenase, C-terminal domain
YPA_3902	PF02770	Acyl-CoA dehydrogenase, middle domain
YPA_3903	PF00588	SpoU rRNA Methylase family
YPA_3903	PF08032	RNA 2'-O ribose methyltransferase substrate binding
YPA_3904	PF00575	S1 RNA binding domain
YPA_3904	PF00773	RNB domain
YPA_3904	PF08206	Ribonuclease B OB domain
YPA_3904	PF08461	Ribonuclease R winged-helix domain
YPA_3905	PF02082	Transcriptional regulator
YPA_3906	PF00709	Adenylosuccinate synthetase
YPA_3907	PF09838	YPA_3907
YPA_3908	PF01145	SPFH domain / Band 7 family
YPA_3909	PF01145	SPFH domain / Band 7 family
YPA_3909	PF12221	YPA_3909
YPA_3910	PF01926	50S ribosome-binding GTPase
YPA_3910	PF13167	YPA_3910
YPA_3910	PF16360	YPA_3910
YPA_3911	PF17209	YPA_3911
YPA_3912	PF01715	IPP transferase
YPA_3913	PF01119	DNA mismatch repair protein, C-terminal domain
YPA_3913	PF08676	MutL C terminal dimerisation domain
YPA_3913	PF13589	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
YPA_3914	PF01476	LysM domain
YPA_3914	PF01520	N-acetylmuramoyl-L-alanine amidase
YPA_3914	PF11741	AMIN domain
YPA_3915	PF02367	Uncharacterised P-loop hydrolase UPF0079
YPA_3916	PF01256	Carbohydrate kinase
YPA_3916	PF03853	YjeF-related protein N-terminus
YPA_3917	PF08331	YPA_3917
YPA_3917	PF13484	YPA_3917
YPA_3918	PF00929	Exonuclease
YPA_3919	PF03193	Protein of unknown function, DUF258
YPA_3920	PF02666	YPA_3920
YPA_3921	PF00924	Mechanosensitive ion channel
YPA_3921	PF12794	YPA_3921
YPA_3921	PF12795	YPA_3921
YPA_3922	PF00152	tRNA synthetases class II (D, K and N)
YPA_3923	PF00890	FAD binding domain
YPA_3923	PF02910	Fumarate reductase flavoprotein C-term
YPA_3924	PF13085	2Fe-2S iron-sulfur cluster binding domain
YPA_3924	PF13183	4Fe-4S dicluster domain
YPA_3925	PF02300	Fumarate reductase subunit C
YPA_3926	PF02313	Fumarate reductase subunit D
YPA_3927	PF00893	Small Multidrug Resistance protein
YPA_3928	PF01132	Elongation factor P (EF-P) OB domain
YPA_3928	PF08207	Elongation factor P (EF-P) KOW-like domain
YPA_3928	PF09285	Elongation factor P, C-terminal
YPA_3929	PF04055	Radical SAM superfamily
YPA_3929	PF13353	4Fe-4S single cluster domain
YPA_3930	PF13698	YPA_3930
YPA_3931	PF00118	TCP-1/cpn60 chaperonin family
YPA_3932	PF00166	Chaperonin 10 Kd subunit
YPA_3933	PF04186	YPA_3933
YPA_3934	PF00206	Lyase
YPA_3934	PF10415	Fumarase C C-terminus
YPA_3935	PF03605	YPA_3935
YPA_3936	PF03091	CutA1 divalent ion tolerance protein
YPA_3937	PF02683	YPA_3937
YPA_3937	PF11412	Disulphide bond corrector protein DsbC
YPA_3937	PF13899	Thioredoxin-like
YPA_3938	PF00384	Molybdopterin oxidoreductase
YPA_3938	PF01568	Molydopterin dinucleotide binding domain
YPA_3938	PF04879	Molybdopterin oxidoreductase Fe4S4 domain
YPA_3939	PF12800	4Fe-4S binding domain
YPA_3939	PF13187	4Fe-4S dicluster domain
YPA_3940	PF07992	Pyridine nucleotide-disulphide oxidoreductase
YPA_3940	PF13247	4Fe-4S dicluster domain
YPA_3940	PF14691	Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster
YPA_3941	PF00440	Bacterial regulatory proteins, tetR family
YPA_3942	PF03272	YPA_3942
YPA_3942	PF13402	Peptidase M60-like family
YPA_3945	PF03400	YPA_3945
YPA_3947	PF06379	YPA_3947
YPA_3949	PF02311	AraC-like ligand binding domain
YPA_3949	PF12833	Helix-turn-helix domain
YPA_3950	PF02311	AraC-like ligand binding domain
YPA_3950	PF12833	Helix-turn-helix domain
YPA_3952	PF00370	FGGY family of carbohydrate kinases, N-terminal domain
YPA_3952	PF02782	FGGY family of carbohydrate kinases, C-terminal domain
YPA_3953	PF06134	L-rhamnose isomerase (RhaA)
YPA_3954	PF00596	Class II Aldolase and Adducin N-terminal domain
YPA_3955	PF00465	Iron-containing alcohol dehydrogenase
YPA_3956	PF01695	IstB-like ATP binding protein
YPA_3957	PF00665	Integrase core domain
YPA_3957	PF02796	Helix-turn-helix domain of resolvase
YPA_3958	PF00465	Iron-containing alcohol dehydrogenase
YPA_3959	PF05336	Domain of unknown function (DUF718)
YPA_3960	PF00436	Single-strand binding protein family
YPA_3961	PF00005	ABC transporter
YPA_3962	PF04237	YjbR
YPA_3963	PF00155	Aminotransferase class I and II
YPA_3964	PF00842	Alanine racemase, C-terminal domain
YPA_3964	PF01168	Alanine racemase, N-terminal domain
YPA_3965	PF00772	DnaB-like helicase N terminal domain
YPA_3965	PF03796	DnaB-like helicase C terminal domain
YPA_3966	PF00107	Zinc-binding dehydrogenase
YPA_3966	PF08240	Alcohol dehydrogenase GroES-like domain
YPA_3967	PF09583	YPA_3967
YPA_3968	PF01207	Dihydrouridine synthase (Dus)
YPA_3969	PF01475	Ferric uptake regulator family
YPA_3970	PF00717	Peptidase S24-like
YPA_3970	PF01726	LexA DNA binding domain
YPA_3971	PF01219	Prokaryotic diacylglycerol kinase
YPA_3972	PF01553	Acyltransferase
YPA_3973	PF01040	UbiA prenyltransferase family
YPA_3974	PF04345	Chorismate lyase
YPA_3975	PF03797	Autotransporter beta-domain
YPA_3976	PF01565	FAD binding domain
YPA_3976	PF08031	Berberine and berberine like
YPA_3979	PF00345	Pili and flagellar-assembly chaperone, PapD N-terminal domain
YPA_3980	PF00577	Outer membrane usher protein
YPA_3980	PF13953	PapC C-terminal domain
YPA_3980	PF13954	PapC N-terminal domain
YPA_3981	PF06551	YPA_3981
YPA_3982	PF02342	TerD domain
YPA_3983	PF02342	TerD domain
YPA_3984	PF03741	YPA_3984
YPA_3985	PF05099	Tellurite resistance protein TerB
YPA_3986	PF02342	TerD domain
YPA_3987	PF02342	TerD domain
YPA_3988	PF15632	YPA_3988
YPA_3989	PF12500	YPA_3989
YPA_3989	PF15609	YPA_3989
YPA_3991	PF11202	YPA_3991
YPA_3991	PF15608	YPA_3991
YPA_3992	PF15617	YPA_3992
YPA_3994	PF02219	Methylenetetrahydrofolate reductase
YPA_3995	PF04055	Radical SAM superfamily
YPA_3996	PF06228	Haem utilisation ChuX/HutX
YPA_3997	PF13460	NADH(P)-binding
YPA_3998	PF10636	Hemin uptake protein hemP
YPA_3999	PF00593	TonB dependent receptor
YPA_3999	PF07715	TonB-dependent Receptor Plug Domain
YPA_4000	PF05171	Haemin-degrading HemS
YPA_4001	PF01497	Periplasmic binding protein
YPA_4002	PF01032	FecCD transport family
YPA_4003	PF00005	ABC transporter
YPA_4004	PF01053	Cys/Met metabolism PLP-dependent enzyme
YPA_4006	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
YPA_4006	PF03466	LysR substrate binding domain
YPA_4007	PF01206	Sulfurtransferase TusA
YPA_4008	PF04143	YPA_4008
YPA_4009	PF01312	FlhB HrpN YscU SpaS Family
YPA_4010	PF01311	YPA_4010
YPA_4011	PF01313	YPA_4011
YPA_4012	PF00813	YPA_4012
YPA_4013	PF01052	Surface presentation of antigens (SPOA)
YPA_4016	PF00006	ATP synthase alpha/beta family, nucleotide-binding domain
YPA_4016	PF02874	ATP synthase alpha/beta family, beta-barrel domain
YPA_4017	PF00771	FHIPEP family
YPA_4018	PF06188	YPA_4018
YPA_4019	PF13327	YPA_4019
YPA_4020	PF01514	Secretory protein of YscJ/FliF family
YPA_4022	PF06287	YPA_4022
YPA_4023	PF09392	Type III secretion needle MxiH like
YPA_4024	PF12833	Helix-turn-helix domain
YPA_4025	PF08988	Protein of unknown function (DUF1895)
YPA_4026	PF16693	YPA_4026
YPA_4027	PF00263	YPA_4027
YPA_4027	PF03958	Bacterial type II/III secretion system short domain
YPA_4028	PF00072	Response regulator receiver domain
YPA_4028	PF00512	His Kinase A (phospho-acceptor) domain
YPA_4028	PF01627	Hpt domain
YPA_4028	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
YPA_4029	PF00072	Response regulator receiver domain
YPA_4029	PF00196	Bacterial regulatory proteins, luxR family
YPA_4030	PF00375	Sodium:dicarboxylate symporter family
YPA_4031	PF00501	AMP-binding enzyme
YPA_4031	PF13193	AMP-binding enzyme C-terminal domain
YPA_4031	PF16177	YPA_4031
YPA_4032	PF04341	YPA_4032
YPA_4033	PF00474	Sodium:solute symporter family
YPA_4034	PF12715	Abhydrolase family
YPA_4035	PF00665	Integrase core domain
YPA_4035	PF02796	Helix-turn-helix domain of resolvase
YPA_4036	PF01695	IstB-like ATP binding protein
YPA_4037	PF12848	ABC transporter
YPA_4038	PF00005	ABC transporter
YPA_4039	PF00691	OmpA family
YPA_4040	PF00990	GGDEF domain
YPA_4040	PF17152	YPA_4040
YPA_4041	PF13689	YPA_4041
YPA_4042	PF00122	E1-E2 ATPase
YPA_4042	PF00689	Cation transporting ATPase, C-terminus
YPA_4042	PF00690	Cation transporter/ATPase, N-terminus
YPA_4042	PF00702	haloacid dehalogenase-like hydrolase
YPA_4043	PF01464	Transglycosylase SLT domain
YPA_4043	PF14718	Soluble lytic murein transglycosylase L domain
YPA_4044	PF01371	Trp repressor protein
YPA_4045	PF01931	Protein of unknown function DUF84
YPA_4046	PF00300	Histidine phosphatase superfamily (branch 1)
YPA_4047	PF06445	GyrI-like small molecule binding domain
YPA_4047	PF12833	Helix-turn-helix domain
YPA_4048	PF05981	YPA_4048
YPA_4049	PF00072	Response regulator receiver domain
YPA_4049	PF00486	Transcriptional regulatory protein, C terminal
YPA_4051	PF00696	Amino acid kinase family
YPA_4051	PF00742	Homoserine dehydrogenase
YPA_4051	PF01842	ACT domain
YPA_4051	PF03447	Homoserine dehydrogenase, NAD binding domain
YPA_4051	PF13840	ACT domain
YPA_4052	PF00288	GHMP kinases N terminal domain
YPA_4052	PF08544	GHMP kinases C terminal
YPA_4053	PF00291	Pyridoxal-phosphate dependent enzyme
YPA_4053	PF14821	Threonine synthase N terminus
YPA_4054	PF03883	YPA_4054
YPA_4056	PF00923	Transaldolase
YPA_4058	PF00994	Probable molybdopterin binding domain
YPA_4059	PF07690	Major Facilitator Superfamily
YPA_4061	PF01184	YPA_4061
YPA_4062	PF00012	Hsp70 protein
YPA_4063	PF00226	DnaJ domain
YPA_4063	PF00684	DnaJ central domain
YPA_4063	PF01556	DnaJ C terminal domain
YPA_4064	PF06965	Na+/H+ antiporter 1
YPA_4065	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
YPA_4065	PF03466	LysR substrate binding domain
YPA_4066	PF01649	Ribosomal protein S20
YPA_4067	PF01687	Riboflavin kinase
YPA_4067	PF06574	FAD synthetase
YPA_4068	PF00133	tRNA synthetases class I (I, L, M and V)
YPA_4068	PF06827	Zinc finger found in FPG and IleRS
YPA_4068	PF08264	Anticodon-binding domain of tRNA
YPA_4069	PF01252	YPA_4069
YPA_4070	PF00254	FKBP-type peptidyl-prolyl cis-trans isomerase
YPA_4071	PF02401	LytB protein
YPA_4072	PF01797	Transposase IS200 like
YPA_4073	PF01113	Dihydrodipicolinate reductase, N-terminus
YPA_4073	PF05173	Dihydrodipicolinate reductase, C-terminus
YPA_4074	PF00117	Glutamine amidotransferase class-I
YPA_4074	PF00988	Carbamoyl-phosphate synthase small chain, CPSase domain
YPA_4075	PF02142	MGS-like domain
YPA_4075	PF02786	Carbamoyl-phosphate synthase L chain, ATP binding domain
YPA_4075	PF02787	Carbamoyl-phosphate synthetase large chain, oligomerisation domain
YPA_4076	PF01810	YPA_4076
YPA_4077	PF06738	YPA_4077
YPA_4078	PF12821	YPA_4078
YPA_4079	PF00186	Dihydrofolate reductase
YPA_4080	PF01797	Transposase IS200 like
YPA_4082	PF12582	YPA_4082
YPA_4083	PF12582	YPA_4083
YPA_4084	PF00149	Calcineurin-like phosphoesterase
YPA_4085	PF04379	Protein of unknown function (DUF525)
YPA_4086	PF00398	Ribosomal RNA adenine dimethylase
YPA_4087	PF04166	Pyridoxal phosphate biosynthetic protein PdxA
YPA_4088	PF00639	PPIC-type PPIASE domain
YPA_4088	PF09312	SurA N-terminal domain
YPA_4089	PF03968	OstA-like protein
YPA_4089	PF04453	Organic solvent tolerance protein
YPA_4090	PF00226	DnaJ domain
YPA_4090	PF05099	Tellurite resistance protein TerB
YPA_4091	PF00849	RNA pseudouridylate synthase
YPA_4093	PF10074	YPA_4093
YPA_4094	PF06812	YPA_4094
YPA_4095	PF05591	YPA_4095
YPA_4096	PF05943	YPA_4096
YPA_4097	PF01695	IstB-like ATP binding protein
YPA_4098	PF00665	Integrase core domain
YPA_4098	PF02796	Helix-turn-helix domain of resolvase
YPA_4099	PF05231	YPA_4099
YPA_4100	PF00072	Response regulator receiver domain
YPA_4100	PF00196	Bacterial regulatory proteins, luxR family
YPA_4101	PF00884	Sulfatase
YPA_4101	PF08019	YPA_4101
YPA_4102	PF12146	Putative lysophospholipase
YPA_4103	PF00324	Amino acid permease
YPA_4104	PF00221	Aromatic amino acid lyase
YPA_4105	PF01175	Urocanase
YPA_4105	PF17391	YPA_4105
YPA_4105	PF17392	YPA_4105
YPA_4106	PF00291	Pyridoxal-phosphate dependent enzyme
YPA_4107	PF00156	Phosphoribosyl transferase domain
YPA_4108	PF00892	EamA-like transporter family
YPA_4110	PF00665	Integrase core domain
YPA_4110	PF02796	Helix-turn-helix domain of resolvase
YPA_4111	PF01695	IstB-like ATP binding protein
YPA_4112	PF13535	ATP-grasp domain
YPA_4113	PF01497	Periplasmic binding protein
YPA_4114	PF01032	FecCD transport family
YPA_4115	PF01032	FecCD transport family
YPA_4116	PF00005	ABC transporter
YPA_4117	PF13310	YPA_4117
YPA_4119	PF01381	Helix-turn-helix
YPA_4120	PF13737	YPA_4120
YPA_4123	PF00589	Phage integrase family
YPA_4123	PF13356	Domain of unknown function (DUF4102)
YPA_4124	PF12833	Helix-turn-helix domain
YPA_4124	PF13377	Periplasmic binding protein-like domain
YPA_4125	PF02653	YPA_4125
YPA_4126	PF00005	ABC transporter
YPA_4127	PF13407	Periplasmic binding protein domain
YPA_4129	PF00370	FGGY family of carbohydrate kinases, N-terminal domain
YPA_4129	PF02782	FGGY family of carbohydrate kinases, C-terminal domain
YPA_4130	PF00419	Fimbrial protein
YPA_4131	PF00345	Pili and flagellar-assembly chaperone, PapD N-terminal domain
YPA_4131	PF02753	Pili assembly chaperone PapD, C-terminal domain
YPA_4132	PF13953	PapC C-terminal domain
YPA_4133	PF00577	Outer membrane usher protein
YPA_4134	PF00577	Outer membrane usher protein
YPA_4134	PF13954	PapC N-terminal domain
YPA_4135	PF00419	Fimbrial protein
YPA_4136	PF01757	YPA_4136
YPA_4137	PF13518	Helix-turn-helix domain
YPA_4138	PF00665	Integrase core domain
YPA_4138	PF13276	YPA_4138
YPA_4139	PF08282	haloacid dehalogenase-like hydrolase
YPA_4140	PF00204	DNA gyrase B
YPA_4140	PF00986	DNA gyrase B subunit, carboxyl terminus
YPA_4140	PF01751	Toprim domain
YPA_4140	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
YPA_4141	PF02463	RecF/RecN/SMC N terminal domain
YPA_4142	PF00712	DNA polymerase III beta subunit, N-terminal domain
YPA_4142	PF02767	DNA polymerase III beta subunit, central domain
YPA_4142	PF02768	DNA polymerase III beta subunit, C-terminal domain
YPA_4143	PF00308	Bacterial dnaA  protein
YPA_4143	PF08299	Bacterial dnaA protein helix-turn-helix
YPA_4143	PF11638	DnaA N-terminal domain
YPA_4144	PF00468	Ribosomal protein L34
YPA_4145	PF00825	Ribonuclease P
YPA_4146	PF01809	YPA_4146
YPA_4147	PF02096	60Kd inner membrane protein
YPA_4147	PF14849	YidC periplasmic domain
YPA_4148	PF01926	50S ribosome-binding GTPase
YPA_4148	PF10396	GTP-binding protein TrmE N-terminus
YPA_4148	PF12631	Catalytic cysteine-containing C-terminus of GTPase, MnmE
YPA_4149	PF07055	Enoyl reductase FAD binding domain
YPA_4149	PF12241	Trans-2-enoyl-CoA reductase catalytic region
YPA_4149	PF12242	NAD(P)H binding domain of trans-2-enoyl-CoA reductase
YPA_4152	PF00860	Permease family
YPA_4153	PF13419	Haloacid dehalogenase-like hydrolase
YPA_4154	PF00528	Binding-protein-dependent transport system inner membrane component
YPA_4155	PF00528	Binding-protein-dependent transport system inner membrane component
YPA_4156	PF00497	Bacterial extracellular solute-binding proteins, family 3
YPA_4157	PF04519	YPA_4157
YPA_4158	PF01895	PhoU domain
YPA_4159	PF00005	ABC transporter
YPA_4160	PF00528	Binding-protein-dependent transport system inner membrane component
YPA_4161	PF00528	Binding-protein-dependent transport system inner membrane component
YPA_4162	PF12849	PBP superfamily domain
YPA_4163	PF01380	SIS domain
YPA_4163	PF13522	Glutamine amidotransferase domain
YPA_4164	PF00132	Bacterial transferase hexapeptide (six repeats)
YPA_4164	PF12804	MobA-like NTP transferase domain
YPA_4165	PF00401	ATP synthase, Delta/Epsilon chain, long alpha-helix domain
YPA_4165	PF02823	ATP synthase, Delta/Epsilon chain, beta-sandwich domain
YPA_4166	PF00006	ATP synthase alpha/beta family, nucleotide-binding domain
YPA_4166	PF02874	ATP synthase alpha/beta family, beta-barrel domain
YPA_4167	PF00231	ATP synthase
YPA_4168	PF00006	ATP synthase alpha/beta family, nucleotide-binding domain
YPA_4168	PF00306	ATP synthase alpha/beta chain, C terminal domain
YPA_4168	PF02874	ATP synthase alpha/beta family, beta-barrel domain
YPA_4169	PF00213	ATP synthase delta (OSCP) subunit
YPA_4170	PF00430	ATP synthase B/B' CF(0)
YPA_4171	PF00137	ATP synthase subunit C
YPA_4172	PF00119	ATP synthase A chain
YPA_4173	PF03899	YPA_4173
YPA_4174	PF02527	rRNA small subunit methyltransferase G
YPA_4175	PF01134	Glucose inhibited division protein A
YPA_4175	PF13932	GidA associated domain 3
YPA_CD0001	PF00665	Integrase core domain
YPA_CD0001	PF02796	Helix-turn-helix domain of resolvase
YPA_CD0002	PF01695	IstB-like ATP binding protein
YPA_CD0003	PF09013	YopH, N-terminal
YPA_CD0004	PF02108	YPA_CD0004
YPA_CD0005	PF06578	YPA_CD0005
YPA_CD0006	PF01514	Secretory protein of YscJ/FliF family
YPA_CD0007	PF17001	YPA_CD0007
YPA_CD0008	PF09025	YopR Core
YPA_CD0009	PF09477	Bacterial type II secretion system chaperone protein (type_III_yscG)
YPA_CD0010	PF09392	Type III secretion needle MxiH like
YPA_CD0011	PF16693	YPA_CD0011
YPA_CD0011	PF16697	YPA_CD0011
YPA_CD0012	PF00263	YPA_CD0012
YPA_CD0012	PF03958	Bacterial type II/III secretion system short domain
YPA_CD0013	PF05932	Tir chaperone protein (CesT) family
YPA_CD0014	PF02311	AraC-like ligand binding domain
YPA_CD0014	PF12833	Helix-turn-helix domain
YPA_CD0015	PF01312	FlhB HrpN YscU SpaS Family
YPA_CD0016	PF01311	YPA_CD0016
YPA_CD0017	PF01313	YPA_CD0017
YPA_CD0018	PF00813	YPA_CD0018
YPA_CD0019	PF01052	Surface presentation of antigens (SPOA)
YPA_CD0020	PF02120	Flagellar hook-length control protein FliK
YPA_CD0021	PF07321	Type III secretion protein YscO
YPA_CD0022	PF00006	ATP synthase alpha/beta family, nucleotide-binding domain
YPA_CD0022	PF02874	ATP synthase alpha/beta family, beta-barrel domain
YPA_CD0023	PF07201	HrpJ-like domain
YPA_CD0024	PF09059	TyeA
YPA_CD0026	PF09474	YPA_CD0026
YPA_CD0028	PF00771	FHIPEP family
YPA_CD0029	PF09621	YPA_CD0029
YPA_CD0030	PF04792	V antigen (LcrV) protein
YPA_CD0031	PF07720	Tetratricopeptide repeat
YPA_CD0032	PF04888	YPA_CD0032
YPA_CD0033	PF05844	YopD protein
YPA_CD0035	PF13610	YPA_CD0035
YPA_CD0038	PF00872	YPA_CD0038
YPA_CD0041	PF05932	Tir chaperone protein (CesT) family
YPA_CD0042	PF03543	Yersinia/Haemophilus virulence surface antigen
YPA_CD0044	PF05818	YPA_CD0044
YPA_CD0045	PF01527	Transposase
YPA_CD0046	PF13276	YPA_CD0046
YPA_CD0047	PF13683	YPA_CD0047
YPA_CD0048	PF00376	MerR family regulatory protein
YPA_CD0048	PF13614	AAA domain
YPA_CD0049	PF02195	ParB-like nuclease domain
YPA_CD0050	PF03693	Uncharacterised protein family (UPF0156)
YPA_CD0051	PF03545	Yersinia virulence determinant (YopE)
YPA_CD0051	PF09020	YopE, N terminal
YPA_CD0052	PF05932	Tir chaperone protein (CesT) family
YPA_CD0053	PF13683	YPA_CD0053
YPA_CD0054	PF00665	Integrase core domain
YPA_CD0055	PF01695	IstB-like ATP binding protein
YPA_CD0056	PF05932	Tir chaperone protein (CesT) family
YPA_CD0057	PF13276	YPA_CD0057
YPA_CD0057	PF13683	YPA_CD0057
YPA_CD0058	PF01527	Transposase
YPA_CD0059	PF00239	Resolvase, N terminal domain
YPA_CD0059	PF02796	Helix-turn-helix domain of resolvase
YPA_CD0061	PF01526	YPA_CD0061
YPA_CD0061	PF13700	YPA_CD0061
YPA_CD0062	PF03895	YadA-like C-terminal region
YPA_CD0062	PF05658	Head domain of trimeric autotransporter adhesin
YPA_CD0062	PF05662	Coiled stalk of trimeric autotransporter adhesin
YPA_CD0063	PF01527	Transposase
YPA_CD0065	PF01527	Transposase
YPA_CD0066	PF13276	YPA_CD0066
YPA_CD0067	PF13091	PLD-like domain
YPA_CD0068	PF10723	Replication regulatory protein RepB
YPA_CD0069	PF02387	YPA_CD0069
YPA_CD0070	PF00665	Integrase core domain
YPA_CD0071	PF00069	Protein kinase domain
YPA_CD0071	PF09632	Rac1-binding domain
YPA_CD0072	PF03421	YPA_CD0072
YPA_CD0073	PF13683	YPA_CD0073
YPA_CD0074	PF13817	YPA_CD0074
YPA_CD0075	PF00102	Protein-tyrosine phosphatase
YPA_CD0075	PF09013	YopH, N-terminal
YPA_CD0077	PF13683	YPA_CD0077
YPA_CD0079	PF07216	YPA_CD0079
YPA_CD0080	PF01527	Transposase
YPA_CD0081	PF08988	Protein of unknown function (DUF1895)
YPA_CD0085	PF05016	Plasmid stabilisation system protein
YPA_MT0001	PF00665	Integrase core domain
YPA_MT0001	PF02796	Helix-turn-helix domain of resolvase
YPA_MT0002	PF01695	IstB-like ATP binding protein
YPA_MT0003	PF02413	YPA_MT0003
YPA_MT0004	PF03335	Phage tail fibre repeat
YPA_MT0004	PF03406	YPA_MT0004
YPA_MT0004	PF07484	Phage Tail Collar Domain
YPA_MT0005	PF14301	YPA_MT0005
YPA_MT0006	PF09327	YPA_MT0006
YPA_MT0006	PF12421	YPA_MT0006
YPA_MT0006	PF13550	YPA_MT0006
YPA_MT0008	PF00877	NlpC/P60 family
YPA_MT0008	PF14464	Prokaryotic homologs of the JAB domain
YPA_MT0009	PF05100	YPA_MT0009
YPA_MT0010	PF05939	YPA_MT0010
YPA_MT0011	PF09718	YPA_MT0011
YPA_MT0015	PF02368	Bacterial Ig-like domain (group 2)
YPA_MT0021	PF02368	Bacterial Ig-like domain (group 2)
YPA_MT0025	PF03237	Terminase-like family
YPA_MT0030	PF00005	ABC transporter
YPA_MT0031	PF02195	ParB-like nuclease domain
YPA_MT0032	PF02195	ParB-like nuclease domain
YPA_MT0033	PF00270	DEAD/DEAH box helicase
YPA_MT0033	PF00271	Helicase conserved C-terminal domain
YPA_MT0036	PF03614	YPA_MT0036
YPA_MT0038	PF01797	Transposase IS200 like
YPA_MT0040	PF13476	AAA domain
YPA_MT0041	PF00149	Calcineurin-like phosphoesterase
YPA_MT0042	PF09084	NMT1/THI5 like
YPA_MT0044	PF01051	Initiator Replication protein
YPA_MT0049	PF00665	Integrase core domain
YPA_MT0049	PF02796	Helix-turn-helix domain of resolvase
YPA_MT0050	PF01695	IstB-like ATP binding protein
YPA_MT0051	PF01145	SPFH domain / Band 7 family
YPA_MT0052	PF00154	recA bacterial DNA recombination protein
YPA_MT0054	PF01367	5'-3' exonuclease, C-terminal SAM fold
YPA_MT0054	PF02739	5'-3' exonuclease, N-terminal resolvase-like domain
YPA_MT0059	PF02811	PHP domain
YPA_MT0059	PF07733	Bacterial DNA polymerase III alpha subunit
YPA_MT0059	PF14579	Helix-hairpin-helix motif
YPA_MT0060	PF07728	AAA domain (dynein-related subfamily)
YPA_MT0061	PF06213	YPA_MT0061
YPA_MT0061	PF11775	YPA_MT0061
YPA_MT0062	PF01695	IstB-like ATP binding protein
YPA_MT0063	PF00665	Integrase core domain
YPA_MT0063	PF02796	Helix-turn-helix domain of resolvase
YPA_MT0064	PF06213	YPA_MT0064
YPA_MT0069	PF00577	Outer membrane usher protein
YPA_MT0069	PF13953	PapC C-terminal domain
YPA_MT0069	PF13954	PapC N-terminal domain
YPA_MT0070	PF00345	Pili and flagellar-assembly chaperone, PapD N-terminal domain
YPA_MT0070	PF02753	Pili assembly chaperone PapD, C-terminal domain
YPA_MT0071	PF00872	YPA_MT0071
YPA_MT0072	PF01548	YPA_MT0072
YPA_MT0072	PF02371	YPA_MT0072
YPA_MT0074	PF00078	Reverse transcriptase (RNA-dependent DNA polymerase)
YPA_MT0076	PF13091	PLD-like domain
YPA_MT0078	PF04754	YPA_MT0078
YPA_MT0079	PF00239	Resolvase, N terminal domain
YPA_MT0080	PF02604	Antitoxin Phd_YefM, type II toxin-antitoxin system
YPA_MT0081	PF13614	AAA domain
YPA_MT0082	PF02195	ParB-like nuclease domain
YPA_MT0082	PF08775	ParB family
YPA_MT0083	PF13191	AAA ATPase domain
YPA_MT0084	PF01555	DNA methylase
YPA_MT0086	PF07128	YPA_MT0086
YPA_MT0088	PF07275	Antirestriction protein (ArdA)
YPA_MT0089	PF06006	Bacterial protein of unknown function (DUF905)
YPA_MT0090	PF02195	ParB-like nuclease domain
YPA_MT0095	PF09255	Caf1 Capsule antigen
YPA_MT0096	PF06445	GyrI-like small molecule binding domain
YPA_MT0096	PF12833	Helix-turn-helix domain
YPA_MT0098	PF13438	YPA_MT0098
YPA_PCP0001	PF00665	Integrase core domain
YPA_PCP0001	PF02796	Helix-turn-helix domain of resolvase
YPA_PCP0002	PF01695	IstB-like ATP binding protein
YPA_PCP0003	PF16754	YPA_PCP0003
YPA_PCP0005	PF01278	Omptin family
YPA_PCP0006	PF13744	Helix-turn-helix domain
YPA_PCP0007	PF05973	YPA_PCP0007
YPA_PCP0008	PF01815	Rop protein
YPA_PCP0009	PF01815	Rop protein