YPA_0002 SM00344 helix_turn_helix ASNC type YPA_0004 SM00327 von Willebrand factor (vWF) type A domain YPA_0005 SM00382 ATPases associated with a variety of cellular activities YPA_0007 SM00382 ATPases associated with a variety of cellular activities YPA_0014 SM00345 helix_turn_helix gluconate operon transcriptional repressor YPA_0014 SM00895 YPA_0014 YPA_0021 SM01018 B12 binding domain YPA_0022 SM00912 haemagglutination activity domain YPA_0032 SM00382 ATPases associated with a variety of cellular activities YPA_0043 SM01387 YPA_0043 YPA_0047 SM00316 Ribosomal protein S1-like RNA-binding domain YPA_0047 SM00322 K homology RNA-binding domain YPA_0052 SM00382 ATPases associated with a variety of cellular activities YPA_0054 SM01103 YPA_0054 YPA_0057 SM00448 cheY-homologous receiver domain YPA_0057 SM00862 Transcriptional regulatory protein, C terminal YPA_0058 SM00387 Histidine kinase-like ATPases YPA_0058 SM00388 His Kinase A (phosphoacceptor) domain YPA_0076 SM00116 Domain in cystathionine beta-synthase and other proteins. YPA_0076 SM01091 Transporter associated domain YPA_0085 SM01321 YPA_0085 YPA_0093 SM00382 ATPases associated with a variety of cellular activities YPA_0097 SM00859 Semialdehyde dehydrogenase, NAD binding domain YPA_0102 SM00382 ATPases associated with a variety of cellular activities YPA_0115 SM00382 ATPases associated with a variety of cellular activities YPA_0120 SM00382 ATPases associated with a variety of cellular activities YPA_0135 SM00507 HNH nucleases YPA_0149 SM00487 DEAD-like helicases superfamily YPA_0149 SM00490 helicase superfamily c-terminal domain YPA_0151 SM00357 Cold shock protein domain YPA_0151 SM00382 ATPases associated with a variety of cellular activities YPA_0151 SM00959 Rho termination factor, N-terminal domain YPA_0155 SM00984 UDP binding domain YPA_0166 SM00382 ATPases associated with a variety of cellular activities YPA_0168 SM01321 YPA_0168 YPA_0175 SM01219 YPA_0175 YPA_0189 SM00341 Helicase and RNase D C-terminal YPA_0189 SM00487 DEAD-like helicases superfamily YPA_0189 SM00490 helicase superfamily c-terminal domain YPA_0189 SM00956 YPA_0189 YPA_0208 SM00382 ATPases associated with a variety of cellular activities YPA_0208 SM00962 SRP54-type protein, GTPase domain YPA_0208 SM00963 SRP54-type protein, helical bundle domain YPA_0209 SM00382 ATPases associated with a variety of cellular activities YPA_0212 SM01321 YPA_0212 YPA_0215 SM00382 ATPases associated with a variety of cellular activities YPA_0219 SM00382 ATPases associated with a variety of cellular activities YPA_0220 SM00382 ATPases associated with a variety of cellular activities YPA_0231 SM00382 ATPases associated with a variety of cellular activities YPA_0251 SM00382 ATPases associated with a variety of cellular activities YPA_0255 SM00382 ATPases associated with a variety of cellular activities YPA_0255 SM01086 C-terminal, D2-small domain, of ClpB protein YPA_0258 SM00354 helix_turn _helix lactose operon repressor YPA_0259 SM00487 DEAD-like helicases superfamily YPA_0259 SM00490 helicase superfamily c-terminal domain YPA_0273 SM01006 Siderophore biosynthesis protein domain YPA_0279 SM00421 helix_turn_helix, Lux Regulon YPA_0290 SM00382 ATPases associated with a variety of cellular activities YPA_0290 SM01086 C-terminal, D2-small domain, of ClpB protein YPA_0306 SM00382 ATPases associated with a variety of cellular activities YPA_0312 SM00478 endonuclease III YPA_0312 SM00525 YPA_0312 YPA_0319 SM00729 Elongator protein 3, MiaB family, Radical SAM YPA_0321 SM01152 YPA_0321 YPA_0325 SM00382 ATPases associated with a variety of cellular activities YPA_0328 SM00732 Likely ribonuclease with RNase H fold. YPA_0334 SM00731 SprT homologues. YPA_0337 SM01321 YPA_0337 YPA_0340 SM00861 Transketolase, pyrimidine binding domain YPA_0341 SM01321 YPA_0341 YPA_0342 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain YPA_0347 SM00382 ATPases associated with a variety of cellular activities YPA_0357 SM01011 Aminopeptidase P, N-terminal domain YPA_0373 SM00448 cheY-homologous receiver domain YPA_0373 SM00862 Transcriptional regulatory protein, C terminal YPA_0374 SM00387 Histidine kinase-like ATPases YPA_0374 SM00388 His Kinase A (phosphoacceptor) domain YPA_0380 SM00937 YPA_0380 YPA_0383 SM00382 ATPases associated with a variety of cellular activities YPA_0389 SM00530 Helix-turn-helix XRE-family like proteins YPA_0391 SM00530 Helix-turn-helix XRE-family like proteins YPA_0392 SM00778 Zinc-binding domain of primase-helicase YPA_0392 SM00885 D5 N terminal like YPA_0412 SM00382 ATPases associated with a variety of cellular activities YPA_0413 SM00382 ATPases associated with a variety of cellular activities YPA_0421 SM00354 helix_turn _helix lactose operon repressor YPA_0424 SM00354 helix_turn _helix lactose operon repressor YPA_0439 SM00420 helix_turn_helix, Deoxyribose operon repressor YPA_0439 SM01134 YPA_0439 YPA_0441 SM01321 YPA_0441 YPA_0443 SM00382 ATPases associated with a variety of cellular activities YPA_0446 SM00869 Autotransporter beta-domain YPA_0450 SM00947 Carbonic anhydrase YPA_0454 SM00382 ATPases associated with a variety of cellular activities YPA_0465 SM00862 Transcriptional regulatory protein, C terminal YPA_0467 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). YPA_0467 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain YPA_0467 SM00319 Homologues of the ligand binding domain of Tar YPA_0469 SM00849 Metallo-beta-lactamase superfamily YPA_0474 SM00354 helix_turn _helix lactose operon repressor YPA_0476 SM00563 Phosphate acyltransferases YPA_0481 SM00927 DNA mismatch repair enzyme MutH YPA_0483 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. YPA_0495 SM00646 YPA_0495 YPA_0496 SM00925 MltA specific insert domain YPA_0505 SM00382 ATPases associated with a variety of cellular activities YPA_0506 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs YPA_0506 SM00475 5'-3' exonuclease YPA_0510 SM01321 YPA_0510 YPA_0516 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. YPA_0521 SM01321 YPA_0521 YPA_0527 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. YPA_0529 SM00935 Outer membrane protein (OmpH-like) YPA_0535 SM00481 DNA polymerase alpha chain like domain YPA_0538 SM00977 TilS substrate C-terminal domain YPA_0542 SM01322 YPA_0542 YPA_0550 SM00382 ATPases associated with a variety of cellular activities YPA_0550 SM00930 YPA_0550 YPA_0556 SM00257 Lysin motif YPA_0557 SM00849 Metallo-beta-lactamase superfamily YPA_0560 SM00479 YPA_0560 YPA_0563 SM00382 ATPases associated with a variety of cellular activities YPA_0569 SM00778 Zinc-binding domain of primase-helicase YPA_0578 SM01321 YPA_0578 YPA_0591 SM00861 Transketolase, pyrimidine binding domain YPA_0594 SM00881 CoA binding domain YPA_0609 SM00382 ATPases associated with a variety of cellular activities YPA_0611 SM00936 Penicillin-binding protein 5, C-terminal domain YPA_0613 SM00420 helix_turn_helix, Deoxyribose operon repressor YPA_0613 SM01134 YPA_0613 YPA_0614 SM01133 YPA_0614 YPA_0615 SM00014 Acid phosphatase homologues YPA_0622 SM00382 ATPases associated with a variety of cellular activities YPA_0627 SM00062 Bacterial periplasmic substrate-binding proteins YPA_0627 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. YPA_0628 SM00244 prohibitin homologues YPA_0631 SM00382 ATPases associated with a variety of cellular activities YPA_0638 SM00062 Bacterial periplasmic substrate-binding proteins YPA_0638 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. YPA_0639 SM00382 ATPases associated with a variety of cellular activities YPA_0640 SM00830 Chorismate mutase type II YPA_0655 SM00382 ATPases associated with a variety of cellular activities YPA_0656 SM00357 Cold shock protein domain YPA_0658 SM00382 ATPases associated with a variety of cellular activities YPA_0658 SM01086 C-terminal, D2-small domain, of ClpB protein YPA_0659 SM01321 YPA_0659 YPA_0660 SM00316 Ribosomal protein S1-like RNA-binding domain YPA_0662 SM00382 ATPases associated with a variety of cellular activities YPA_0663 SM00382 ATPases associated with a variety of cellular activities YPA_0665 SM00344 helix_turn_helix ASNC type YPA_0666 SM00843 YPA_0666 YPA_0668 SM00382 ATPases associated with a variety of cellular activities YPA_0677 SM00870 YPA_0677 YPA_0683 SM00316 Ribosomal protein S1-like RNA-binding domain YPA_0684 SM00411 bacterial (prokaryotic) histone like domain YPA_0685 SM00849 Metallo-beta-lactamase superfamily YPA_0686 SM00382 ATPases associated with a variety of cellular activities YPA_0688 SM01150 YPA_0688 YPA_0689 SM00382 ATPases associated with a variety of cellular activities YPA_0691 SM01150 YPA_0691 YPA_0692 SM00357 Cold shock protein domain YPA_0700 SM01321 YPA_0700 YPA_0703 SM00849 Metallo-beta-lactamase superfamily YPA_0713 SM00981 YPA_0713 YPA_0714 SM00382 ATPases associated with a variety of cellular activities YPA_0718 SM01321 YPA_0718 YPA_0719 SM00825 Beta-ketoacyl synthase YPA_0720 SM00382 ATPases associated with a variety of cellular activities YPA_0726 SM01321 YPA_0726 YPA_0733 SM00851 MGS-like domain YPA_0735 SM00881 CoA binding domain YPA_0736 SM00992 Hemimethylated DNA-binding protein YccV like YPA_0737 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase YPA_0748 SM00825 Beta-ketoacyl synthase YPA_0756 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. YPA_0758 SM00382 ATPases associated with a variety of cellular activities YPA_0765 SM00382 ATPases associated with a variety of cellular activities YPA_0765 SM01086 C-terminal, D2-small domain, of ClpB protein YPA_0787 SM00382 ATPases associated with a variety of cellular activities YPA_0791 SM00852 Probable molybdopterin binding domain YPA_0793 SM00382 ATPases associated with a variety of cellular activities YPA_0797 SM00829 Enoylreductase YPA_0803 SM00382 ATPases associated with a variety of cellular activities YPA_0806 SM00919 Malic enzyme, NAD binding domain YPA_0806 SM01274 YPA_0806 YPA_0815 SM01321 YPA_0815 YPA_0821 SM01091 Transporter associated domain YPA_0825 SM01006 Siderophore biosynthesis protein domain YPA_0827 SM00382 ATPases associated with a variety of cellular activities YPA_0836 SM01350 YPA_0836 YPA_0849 SM00382 ATPases associated with a variety of cellular activities YPA_0850 SM00382 ATPases associated with a variety of cellular activities YPA_0857 SM00634 Bacterial Ig-like domain (group 1) YPA_0863 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain YPA_0872 SM00421 helix_turn_helix, Lux Regulon YPA_0872 SM00448 cheY-homologous receiver domain YPA_0882 SM00490 helicase superfamily c-terminal domain YPA_0883 SM01321 YPA_0883 YPA_0889 SM01118 YPA_0889 YPA_0890 SM00507 HNH nucleases YPA_0894 SM00382 ATPases associated with a variety of cellular activities YPA_0903 SM00382 ATPases associated with a variety of cellular activities YPA_0906 SM00450 Rhodanese Homology Domain YPA_0910 SM00382 ATPases associated with a variety of cellular activities YPA_0918 SM00382 ATPases associated with a variety of cellular activities YPA_0920 SM00487 DEAD-like helicases superfamily YPA_0920 SM00488 YPA_0920 YPA_0920 SM00491 YPA_0920 YPA_0921 SM01060 YPA_0921 YPA_0924 SM00852 Probable molybdopterin binding domain YPA_0930 SM00434 DNA Topoisomerase IV YPA_0931 SM00387 Histidine kinase-like ATPases YPA_0931 SM00388 His Kinase A (phosphoacceptor) domain YPA_0931 SM00448 cheY-homologous receiver domain YPA_0932 SM00421 helix_turn_helix, Lux Regulon YPA_0932 SM00448 cheY-homologous receiver domain YPA_0937 SM01321 YPA_0937 YPA_0943 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). YPA_0943 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain YPA_0947 SM00530 Helix-turn-helix XRE-family like proteins YPA_0950 SM01007 Class II Aldolase and Adducin N-terminal domain YPA_0951 SM00420 helix_turn_helix, Deoxyribose operon repressor YPA_0951 SM01134 YPA_0951 YPA_0975 SM00382 ATPases associated with a variety of cellular activities YPA_0981 SM01321 YPA_0981 YPA_0983 SM00487 DEAD-like helicases superfamily YPA_0983 SM00490 helicase superfamily c-terminal domain YPA_0984 SM00363 S4 RNA-binding domain YPA_0988 SM00382 ATPases associated with a variety of cellular activities YPA_0992 SM00052 Putative diguanylate phosphodiesterase YPA_0994 SM00014 Acid phosphatase homologues YPA_0995 SM00833 Cobalamin synthesis protein cobW C-terminal domain YPA_0997 SM00345 helix_turn_helix gluconate operon transcriptional repressor YPA_0997 SM00895 YPA_0997 YPA_1000 SM00841 Elongation factor P, C-terminal YPA_1000 SM01185 YPA_1000 YPA_1012 SM00382 ATPases associated with a variety of cellular activities YPA_1018 SM00862 Transcriptional regulatory protein, C terminal YPA_1023 SM00518 AP endonuclease family 2 YPA_1029 SM00382 ATPases associated with a variety of cellular activities YPA_1035 SM00382 ATPases associated with a variety of cellular activities YPA_1035 SM00930 YPA_1035 YPA_1038 SM00382 ATPases associated with a variety of cellular activities YPA_1041 SM00855 Phosphoglycerate mutase family YPA_1049 SM00382 ATPases associated with a variety of cellular activities YPA_1054 SM00382 ATPases associated with a variety of cellular activities YPA_1058 SM00729 Elongator protein 3, MiaB family, Radical SAM YPA_1058 SM00876 Biotin and Thiamin Synthesis associated domain YPA_1062 SM00382 ATPases associated with a variety of cellular activities YPA_1063 SM00487 DEAD-like helicases superfamily YPA_1063 SM00490 helicase superfamily c-terminal domain YPA_1066 SM00729 Elongator protein 3, MiaB family, Radical SAM YPA_1072 SM01321 YPA_1072 YPA_1081 SM01321 YPA_1081 YPA_1084 SM00091 PAS domain YPA_1084 SM00387 Histidine kinase-like ATPases YPA_1084 SM00388 His Kinase A (phosphoacceptor) domain YPA_1085 SM00382 ATPases associated with a variety of cellular activities YPA_1085 SM00448 cheY-homologous receiver domain YPA_1092 SM00382 ATPases associated with a variety of cellular activities YPA_1095 SM00487 DEAD-like helicases superfamily YPA_1095 SM00490 helicase superfamily c-terminal domain YPA_1102 SM00354 helix_turn _helix lactose operon repressor YPA_1104 SM00382 ATPases associated with a variety of cellular activities YPA_1108 SM00090 RIO-like kinase YPA_1109 SM00382 ATPases associated with a variety of cellular activities YPA_1111 SM00342 helix_turn_helix, arabinose operon control protein YPA_1120 SM00357 Cold shock protein domain YPA_1124 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) YPA_1124 SM00091 PAS domain YPA_1124 SM00267 diguanylate cyclase YPA_1131 SM01091 Transporter associated domain YPA_1132 SM00347 helix_turn_helix multiple antibiotic resistance protein YPA_1142 SM00903 Flavin reductase like domain YPA_1148 SM00487 DEAD-like helicases superfamily YPA_1148 SM00490 helicase superfamily c-terminal domain YPA_1150 SM01022 YPA_1150 YPA_1155 SM00382 ATPases associated with a variety of cellular activities YPA_1169 SM01321 YPA_1169 YPA_1170 SM00634 Bacterial Ig-like domain (group 1) YPA_1173 SM00858 YPA_1173 YPA_1182 SM00047 Lysozyme subfamily 2 YPA_1186 SM01007 Class II Aldolase and Adducin N-terminal domain YPA_1189 SM00382 ATPases associated with a variety of cellular activities YPA_1203 SM00382 ATPases associated with a variety of cellular activities YPA_1210 SM00478 endonuclease III YPA_1214 SM00342 helix_turn_helix, arabinose operon control protein YPA_1222 SM00062 Bacterial periplasmic substrate-binding proteins YPA_1222 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. YPA_1224 SM00382 ATPases associated with a variety of cellular activities YPA_1227 SM00382 ATPases associated with a variety of cellular activities YPA_1243 SM00421 helix_turn_helix, Lux Regulon YPA_1243 SM00448 cheY-homologous receiver domain YPA_1244 SM00278 Helix-hairpin-helix DNA-binding motif class 1 YPA_1244 SM00465 GIY-YIG type nucleases (URI domain) YPA_1266 SM00345 helix_turn_helix gluconate operon transcriptional repressor YPA_1266 SM00866 YPA_1266 YPA_1272 SM00382 ATPases associated with a variety of cellular activities YPA_1276 SM00382 ATPases associated with a variety of cellular activities YPA_1288 SM00822 YPA_1288 YPA_1288 SM00823 Phosphopantetheine attachment site YPA_1288 SM00824 Thioesterase YPA_1288 SM00825 Beta-ketoacyl synthase YPA_1288 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. YPA_1289 SM00823 Phosphopantetheine attachment site YPA_1290 SM00342 helix_turn_helix, arabinose operon control protein YPA_1291 SM00382 ATPases associated with a variety of cellular activities YPA_1292 SM00382 ATPases associated with a variety of cellular activities YPA_1302 SM00062 Bacterial periplasmic substrate-binding proteins YPA_1302 SM00387 Histidine kinase-like ATPases YPA_1302 SM00388 His Kinase A (phosphoacceptor) domain YPA_1302 SM00448 cheY-homologous receiver domain YPA_1303 SM00421 helix_turn_helix, Lux Regulon YPA_1303 SM00448 cheY-homologous receiver domain YPA_1320 SM00420 helix_turn_helix, Deoxyribose operon repressor YPA_1320 SM01134 YPA_1320 YPA_1329 SM00382 ATPases associated with a variety of cellular activities YPA_1342 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain YPA_1342 SM00387 Histidine kinase-like ATPases YPA_1343 SM00345 helix_turn_helix gluconate operon transcriptional repressor YPA_1351 SM00382 ATPases associated with a variety of cellular activities YPA_1355 SM00345 helix_turn_helix gluconate operon transcriptional repressor YPA_1355 SM00866 YPA_1355 YPA_1371 SM00671 Sel1-like repeats. YPA_1372 SM00671 Sel1-like repeats. YPA_1382 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain YPA_1382 SM00387 Histidine kinase-like ATPases YPA_1382 SM00388 His Kinase A (phosphoacceptor) domain YPA_1383 SM00448 cheY-homologous receiver domain YPA_1383 SM00862 Transcriptional regulatory protein, C terminal YPA_1390 SM00450 Rhodanese Homology Domain YPA_1396 SM01400 YPA_1396 YPA_1401 SM00937 YPA_1401 YPA_1407 SM00382 ATPases associated with a variety of cellular activities YPA_1415 SM01321 YPA_1415 YPA_1419 SM00481 DNA polymerase alpha chain like domain YPA_1427 SM00912 haemagglutination activity domain YPA_1428 SM00836 DALR anticodon binding domain YPA_1428 SM01016 Arginyl tRNA synthetase N terminal dom YPA_1439 SM01321 YPA_1439 YPA_1440 SM00278 Helix-hairpin-helix DNA-binding motif class 1 YPA_1441 SM00382 ATPases associated with a variety of cellular activities YPA_1443 SM00382 ATPases associated with a variety of cellular activities YPA_1445 SM00257 Lysin motif YPA_1454 SM00487 DEAD-like helicases superfamily YPA_1454 SM00491 YPA_1454 YPA_1458 SM00341 Helicase and RNase D C-terminal YPA_1458 SM00474 3'-5' exonuclease YPA_1468 SM00382 ATPases associated with a variety of cellular activities YPA_1472 SM00635 Bacterial Ig-like domain 2 YPA_1478 SM00635 Bacterial Ig-like domain 2 YPA_1482 SM01321 YPA_1482 YPA_1484 SM00232 JAB/MPN domain YPA_1487 SM01040 BRO family, N-terminal domain YPA_1490 SM00060 Fibronectin type 3 domain YPA_1503 SM00345 helix_turn_helix gluconate operon transcriptional repressor YPA_1511 SM00763 PrkA AAA domain YPA_1514 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain YPA_1518 SM00870 YPA_1518 YPA_1522 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain YPA_1522 SM00437 Bacterial DNA topoisomerase I DNA-binding domain YPA_1522 SM00493 YPA_1522 YPA_1531 SM00448 cheY-homologous receiver domain YPA_1532 SM00984 UDP binding domain YPA_1533 SM00528 Domain in histone-like proteins of HNS family YPA_1535 SM00382 ATPases associated with a variety of cellular activities YPA_1542 SM00382 ATPases associated with a variety of cellular activities YPA_1543 SM00382 ATPases associated with a variety of cellular activities YPA_1546 SM00155 Phospholipase D. Active site motifs. YPA_1561 SM00749 bacterial OsmY and nodulation domain YPA_1569 SM00481 DNA polymerase alpha chain like domain YPA_1571 SM00363 S4 RNA-binding domain YPA_1573 SM00822 YPA_1573 YPA_1577 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain YPA_1577 SM00437 Bacterial DNA topoisomerase I DNA-binding domain YPA_1577 SM00493 YPA_1577 YPA_1583 SM00014 Acid phosphatase homologues YPA_1585 SM00028 Tetratricopeptide repeats YPA_1587 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family YPA_1590 SM01007 Class II Aldolase and Adducin N-terminal domain YPA_1595 SM00357 Cold shock protein domain YPA_1595 SM00955 YPA_1595 YPA_1598 SM00478 endonuclease III YPA_1598 SM00525 YPA_1598 YPA_1600 SM00900 YPA_1600 YPA_1602 SM00342 helix_turn_helix, arabinose operon control protein YPA_1612 SM00382 ATPases associated with a variety of cellular activities YPA_1616 SM00382 ATPases associated with a variety of cellular activities YPA_1618 SM00342 helix_turn_helix, arabinose operon control protein YPA_1632 SM00382 ATPases associated with a variety of cellular activities YPA_1647 SM00098 Alkaline phosphatase homologues YPA_1649 SM00100 Cyclic nucleotide-monophosphate binding domain YPA_1649 SM00419 helix_turn_helix, cAMP Regulatory protein YPA_1652 SM01002 Alanine dehydrogenase/PNT, C-terminal domain YPA_1652 SM01003 Alanine dehydrogenase/PNT, N-terminal domain YPA_1656 SM00448 cheY-homologous receiver domain YPA_1656 SM00862 Transcriptional regulatory protein, C terminal YPA_1657 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain YPA_1657 SM00387 Histidine kinase-like ATPases YPA_1657 SM00388 His Kinase A (phosphoacceptor) domain YPA_1659 SM01321 YPA_1659 YPA_1663 SM00867 YceI-like domain YPA_1666 SM00020 Trypsin-like serine protease YPA_1667 SM00530 Helix-turn-helix XRE-family like proteins YPA_1670 SM00382 ATPases associated with a variety of cellular activities YPA_1671 SM00382 ATPases associated with a variety of cellular activities YPA_1671 SM00487 DEAD-like helicases superfamily YPA_1671 SM00490 helicase superfamily c-terminal domain YPA_1671 SM00847 Helicase associated domain (HA2) Add an annotation YPA_1683 SM00890 Domain of unknown function YPA_1686 SM00422 helix_turn_helix, mercury resistance YPA_1690 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain YPA_1692 SM01321 YPA_1692 YPA_1693 SM00091 PAS domain YPA_1693 SM00382 ATPases associated with a variety of cellular activities YPA_1695 SM00953 YPA_1695 YPA_1702 SM00382 ATPases associated with a variety of cellular activities YPA_1703 SM01321 YPA_1703 YPA_1707 SM00382 ATPases associated with a variety of cellular activities YPA_1708 SM00382 ATPases associated with a variety of cellular activities YPA_1715 SM00363 S4 RNA-binding domain YPA_1720 SM00347 helix_turn_helix multiple antibiotic resistance protein YPA_1728 SM00479 YPA_1728 YPA_1732 SM00354 helix_turn _helix lactose operon repressor YPA_1740 SM01321 YPA_1740 YPA_1742 SM00382 ATPases associated with a variety of cellular activities YPA_1747 SM00382 ATPases associated with a variety of cellular activities YPA_1767 SM00382 ATPases associated with a variety of cellular activities YPA_1771 SM00411 bacterial (prokaryotic) histone like domain YPA_1772 SM00873 B3/4 domain YPA_1772 SM00874 tRNA synthetase B5 domain YPA_1772 SM00896 Ferredoxin-fold anticodon binding domain YPA_1778 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain YPA_1784 SM00382 ATPases associated with a variety of cellular activities YPA_1796 SM00382 ATPases associated with a variety of cellular activities YPA_1801 SM00382 ATPases associated with a variety of cellular activities YPA_1806 SM00644 YPA_1806 YPA_1807 SM00346 helix_turn_helix isocitrate lyase regulation YPA_1816 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. YPA_1816 SM00245 tail specific protease YPA_1817 SM00945 ProQ/FINO family YPA_1821 SM00972 Spore Coat Protein U domain YPA_1822 SM00972 Spore Coat Protein U domain YPA_1823 SM00972 Spore Coat Protein U domain YPA_1826 SM00972 Spore Coat Protein U domain YPA_1828 SM01022 YPA_1828 YPA_1831 SM00382 ATPases associated with a variety of cellular activities YPA_1835 SM01005 Alanine racemase, C-terminal domain YPA_1839 SM00644 YPA_1839 YPA_1842 SM00448 cheY-homologous receiver domain YPA_1843 SM00448 cheY-homologous receiver domain YPA_1844 SM00138 Methyltransferase, chemotaxis proteins YPA_1845 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). YPA_1845 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain YPA_1845 SM00319 Homologues of the ligand binding domain of Tar YPA_1846 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). YPA_1846 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain YPA_1846 SM00319 Homologues of the ligand binding domain of Tar YPA_1849 SM00869 Autotransporter beta-domain YPA_1854 SM00260 Two component signalling adaptor domain YPA_1855 SM00073 Histidine Phosphotransfer domain YPA_1855 SM00260 Two component signalling adaptor domain YPA_1855 SM00387 Histidine kinase-like ATPases YPA_1855 SM01231 YPA_1855 YPA_1860 SM00831 Cation transporter/ATPase, N-terminus YPA_1862 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). YPA_1862 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain YPA_1862 SM00319 Homologues of the ligand binding domain of Tar YPA_1865 SM00357 Cold shock protein domain YPA_1866 SM00382 ATPases associated with a variety of cellular activities YPA_1868 SM01038 Beta galactosidase small chain YPA_1869 SM00829 Enoylreductase YPA_1872 SM00344 helix_turn_helix ASNC type YPA_1880 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) YPA_1880 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). YPA_1882 SM00354 helix_turn _helix lactose operon repressor YPA_1883 SM01329 YPA_1883 YPA_1890 SM00448 cheY-homologous receiver domain YPA_1890 SM00862 Transcriptional regulatory protein, C terminal YPA_1891 SM00387 Histidine kinase-like ATPases YPA_1891 SM00388 His Kinase A (phosphoacceptor) domain YPA_1892 SM00558 A domain family that is part of the cupin metalloenzyme superfamily. YPA_1898 SM00382 ATPases associated with a variety of cellular activities YPA_1900 SM00487 DEAD-like helicases superfamily YPA_1900 SM00490 helicase superfamily c-terminal domain YPA_1900 SM00982 YPA_1900 YPA_1900 SM01058 CarD-like/TRCF domain YPA_1914 SM00382 ATPases associated with a variety of cellular activities YPA_1916 SM01321 YPA_1916 YPA_1923 SM01321 YPA_1923 YPA_1924 SM00825 Beta-ketoacyl synthase YPA_1926 SM00822 YPA_1926 YPA_1927 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. YPA_1933 SM01321 YPA_1933 YPA_1934 SM00363 S4 RNA-binding domain YPA_1935 SM00316 Ribosomal protein S1-like RNA-binding domain YPA_1947 SM00421 helix_turn_helix, Lux Regulon YPA_1949 SM00450 Rhodanese Homology Domain YPA_1955 SM00421 helix_turn_helix, Lux Regulon YPA_1974 SM00354 helix_turn _helix lactose operon repressor YPA_1976 SM00382 ATPases associated with a variety of cellular activities YPA_1986 SM00912 haemagglutination activity domain YPA_1991 SM01329 YPA_1991 YPA_1993 SM00354 helix_turn _helix lactose operon repressor YPA_1995 SM00382 ATPases associated with a variety of cellular activities YPA_2004 SM00062 Bacterial periplasmic substrate-binding proteins YPA_2004 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. YPA_2006 SM00382 ATPases associated with a variety of cellular activities YPA_2007 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) YPA_2007 SM00091 PAS domain YPA_2007 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). YPA_2009 SM00382 ATPases associated with a variety of cellular activities YPA_2016 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain YPA_2029 SM00354 helix_turn _helix lactose operon repressor YPA_2042 SM00926 Molybdopterin oxidoreductase Fe4S4 domain YPA_2042 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region YPA_2043 SM00928 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region YPA_2050 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. YPA_2057 SM00354 helix_turn _helix lactose operon repressor YPA_2063 SM00052 Putative diguanylate phosphodiesterase YPA_2065 SM00382 ATPases associated with a variety of cellular activities YPA_2068 SM00062 Bacterial periplasmic substrate-binding proteins YPA_2070 SM00382 ATPases associated with a variety of cellular activities YPA_2079 SM00859 Semialdehyde dehydrogenase, NAD binding domain YPA_2081 SM00342 helix_turn_helix, arabinose operon control protein YPA_2086 SM00825 Beta-ketoacyl synthase YPA_2094 SM00463 Small MutS-related domain YPA_2096 SM00855 Phosphoglycerate mutase family YPA_2110 SM00382 ATPases associated with a variety of cellular activities YPA_2123 SM00382 ATPases associated with a variety of cellular activities YPA_2137 SM00382 ATPases associated with a variety of cellular activities YPA_2137 SM01086 C-terminal, D2-small domain, of ClpB protein YPA_2146 SM00421 helix_turn_helix, Lux Regulon YPA_2150 SM00382 ATPases associated with a variety of cellular activities YPA_2154 SM00926 Molybdopterin oxidoreductase Fe4S4 domain YPA_2174 SM01321 YPA_2174 YPA_2178 SM00278 Helix-hairpin-helix DNA-binding motif class 1 YPA_2178 SM00292 breast cancer carboxy-terminal domain YPA_2178 SM00532 Ligase N family YPA_2179 SM00771 ZipA, C-terminal domain (FtsZ-binding) YPA_2186 SM01321 YPA_2186 YPA_2187 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain YPA_2187 SM00387 Histidine kinase-like ATPases YPA_2187 SM00388 His Kinase A (phosphoacceptor) domain YPA_2188 SM00448 cheY-homologous receiver domain YPA_2188 SM00862 Transcriptional regulatory protein, C terminal YPA_2190 SM00382 ATPases associated with a variety of cellular activities YPA_2191 SM00450 Rhodanese Homology Domain YPA_2196 SM00327 von Willebrand factor (vWF) type A domain YPA_2197 SM00387 Histidine kinase-like ATPases YPA_2197 SM00388 His Kinase A (phosphoacceptor) domain YPA_2198 SM00448 cheY-homologous receiver domain YPA_2198 SM00862 Transcriptional regulatory protein, C terminal YPA_2201 SM00382 ATPases associated with a variety of cellular activities YPA_2209 SM00364 Leucine-rich repeats, bacterial type YPA_2212 SM01130 YPA_2212 YPA_2216 SM00869 Autotransporter beta-domain YPA_2222 SM00919 Malic enzyme, NAD binding domain YPA_2222 SM01274 YPA_2222 YPA_2224 SM00382 ATPases associated with a variety of cellular activities YPA_2229 SM00926 Molybdopterin oxidoreductase Fe4S4 domain YPA_2232 SM00421 helix_turn_helix, Lux Regulon YPA_2232 SM00448 cheY-homologous receiver domain YPA_2239 SM00382 ATPases associated with a variety of cellular activities YPA_2251 SM01321 YPA_2251 YPA_2253 SM01130 YPA_2253 YPA_2263 SM01321 YPA_2263 YPA_2270 SM00382 ATPases associated with a variety of cellular activities YPA_2275 SM00924 MgtE intracellular N domain YPA_2279 SM00382 ATPases associated with a variety of cellular activities YPA_2284 SM00345 helix_turn_helix gluconate operon transcriptional repressor YPA_2285 SM00382 ATPases associated with a variety of cellular activities YPA_2290 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain YPA_2290 SM00388 His Kinase A (phosphoacceptor) domain YPA_2291 SM00387 Histidine kinase-like ATPases YPA_2292 SM00448 cheY-homologous receiver domain YPA_2292 SM00862 Transcriptional regulatory protein, C terminal YPA_2295 SM00046 Diacylglycerol kinase catalytic domain (presumed) YPA_2310 SM01321 YPA_2310 YPA_2312 SM00116 Domain in cystathionine beta-synthase and other proteins. YPA_2312 SM01240 YPA_2312 YPA_2316 SM00564 beta-propeller repeat YPA_2320 SM00530 Helix-turn-helix XRE-family like proteins YPA_2321 SM00028 Tetratricopeptide repeats YPA_2323 SM00562 YPA_2323 YPA_2324 SM00247 Beta/gamma crystallins YPA_2326 SM00869 Autotransporter beta-domain YPA_2334 SM00271 DnaJ molecular chaperone homology domain YPA_2351 SM00938 Nitrogen regulatory protein P-II YPA_2353 SM00382 ATPases associated with a variety of cellular activities YPA_2353 SM00448 cheY-homologous receiver domain YPA_2355 SM00387 Histidine kinase-like ATPases YPA_2355 SM00388 His Kinase A (phosphoacceptor) domain YPA_2356 SM01321 YPA_2356 YPA_2360 SM01211 YPA_2360 YPA_2361 SM00062 Bacterial periplasmic substrate-binding proteins YPA_2367 SM01321 YPA_2367 YPA_2370 SM00382 ATPases associated with a variety of cellular activities YPA_2375 SM00382 ATPases associated with a variety of cellular activities YPA_2386 SM00357 Cold shock protein domain YPA_2390 SM00382 ATPases associated with a variety of cellular activities YPA_2391 SM00382 ATPases associated with a variety of cellular activities YPA_2395 SM00988 UreE urease accessory protein, N-terminal domain YPA_2410 SM00342 helix_turn_helix, arabinose operon control protein YPA_2418 SM00448 cheY-homologous receiver domain YPA_2418 SM00862 Transcriptional regulatory protein, C terminal YPA_2419 SM00387 Histidine kinase-like ATPases YPA_2419 SM00388 His Kinase A (phosphoacceptor) domain YPA_2429 SM00796 Allophanate hydrolase subunit 1 YPA_2431 SM00797 Allophanate hydrolase subunit 2 YPA_2437 SM00986 Uracil DNA glycosylase superfamily YPA_2437 SM00987 UreE urease accessory protein, C-terminal domain YPA_2440 SM00248 ankyrin repeats YPA_2442 SM00487 DEAD-like helicases superfamily YPA_2442 SM00490 helicase superfamily c-terminal domain YPA_2452 SM00358 Double-stranded RNA binding motif YPA_2452 SM00535 Ribonuclease III family YPA_2456 SM00382 ATPases associated with a variety of cellular activities YPA_2465 SM01081 Putative carbohydrate binding domain YPA_2468 SM01321 YPA_2468 YPA_2477 SM00729 Elongator protein 3, MiaB family, Radical SAM YPA_2480 SM00116 Domain in cystathionine beta-synthase and other proteins. YPA_2480 SM01091 Transporter associated domain YPA_2482 SM00062 Bacterial periplasmic substrate-binding proteins YPA_2485 SM00382 ATPases associated with a variety of cellular activities YPA_2497 SM00382 ATPases associated with a variety of cellular activities YPA_2498 SM00936 Penicillin-binding protein 5, C-terminal domain YPA_2501 SM00729 Elongator protein 3, MiaB family, Radical SAM YPA_2504 SM00357 Cold shock protein domain YPA_2506 SM00421 helix_turn_helix, Lux Regulon YPA_2511 SM00382 ATPases associated with a variety of cellular activities YPA_2519 SM00382 ATPases associated with a variety of cellular activities YPA_2528 SM01359 YPA_2528 YPA_2528 SM01360 YPA_2528 YPA_2541 SM00869 Autotransporter beta-domain YPA_2548 SM01217 YPA_2548 YPA_2555 SM00382 ATPases associated with a variety of cellular activities YPA_2558 SM00195 Dual specificity phosphatase, catalytic domain YPA_2558 SM00404 Protein tyrosine phosphatase, catalytic domain motif YPA_2560 SM00563 Phosphate acyltransferases YPA_2567 SM01321 YPA_2567 YPA_2568 SM00840 YPA_2568 YPA_2571 SM01001 AIR carboxylase YPA_2574 SM00382 ATPases associated with a variety of cellular activities YPA_2576 SM00822 YPA_2576 YPA_2578 SM00244 prohibitin homologues YPA_2580 SM00422 helix_turn_helix, mercury resistance YPA_2612 SM00387 Histidine kinase-like ATPases YPA_2614 SM00493 YPA_2614 YPA_2616 SM00382 ATPases associated with a variety of cellular activities YPA_2623 SM00382 ATPases associated with a variety of cellular activities YPA_2638 SM00938 Nitrogen regulatory protein P-II YPA_2639 SM00382 ATPases associated with a variety of cellular activities YPA_2640 SM00382 ATPases associated with a variety of cellular activities YPA_2641 SM00344 helix_turn_helix ASNC type YPA_2649 SM00411 bacterial (prokaryotic) histone like domain YPA_2650 SM00382 ATPases associated with a variety of cellular activities YPA_2650 SM00464 Found in ATP-dependent protease La (LON) YPA_2651 SM00382 ATPases associated with a variety of cellular activities YPA_2651 SM00994 ClpX C4-type zinc finger YPA_2651 SM01086 C-terminal, D2-small domain, of ClpB protein YPA_2667 SM00981 YPA_2667 YPA_2671 SM00861 Transketolase, pyrimidine binding domain YPA_2672 SM01321 YPA_2672 YPA_2681 SM01321 YPA_2681 YPA_2682 SM01321 YPA_2682 YPA_2685 SM01323 YPA_2685 YPA_2693 SM00642 Alpha-amylase domain YPA_2697 SM00091 PAS domain YPA_2697 SM00387 Histidine kinase-like ATPases YPA_2697 SM00388 His Kinase A (phosphoacceptor) domain YPA_2698 SM00448 cheY-homologous receiver domain YPA_2698 SM00862 Transcriptional regulatory protein, C terminal YPA_2702 SM00382 ATPases associated with a variety of cellular activities YPA_2714 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase YPA_2718 SM00089 Repeats in polycystic kidney disease 1 (PKD1) and other proteins YPA_2728 SM00900 YPA_2728 YPA_2738 SM00710 Parallel beta-helix repeats YPA_2738 SM00912 haemagglutination activity domain YPA_2743 SM00382 ATPases associated with a variety of cellular activities YPA_2745 SM00382 ATPases associated with a variety of cellular activities YPA_2748 SM00062 Bacterial periplasmic substrate-binding proteins YPA_2757 SM00347 helix_turn_helix multiple antibiotic resistance protein YPA_2760 SM00967 RNA 2'-O ribose methyltransferase substrate binding YPA_2762 SM01144 YPA_2762 YPA_2763 SM00881 CoA binding domain YPA_2764 SM00155 Phospholipase D. Active site motifs. YPA_2766 SM00382 ATPases associated with a variety of cellular activities YPA_2766 SM01086 C-terminal, D2-small domain, of ClpB protein YPA_2768 SM00363 S4 RNA-binding domain YPA_2771 SM01321 YPA_2771 YPA_2772 SM01321 YPA_2772 YPA_2773 SM00830 Chorismate mutase type II YPA_2775 SM00382 ATPases associated with a variety of cellular activities YPA_2787 SM00257 Lysin motif YPA_2789 SM00533 DNA-binding domain of DNA mismatch repair MUTS family YPA_2789 SM00534 ATPase domain of DNA mismatch repair MUTS family YPA_2792 SM00829 Enoylreductase YPA_2795 SM01120 YPA_2795 YPA_2798 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor YPA_2800 SM00062 Bacterial periplasmic substrate-binding proteins YPA_2801 SM01235 YPA_2801 YPA_2814 SM00382 ATPases associated with a variety of cellular activities YPA_2815 SM01321 YPA_2815 YPA_2817 SM00420 helix_turn_helix, Deoxyribose operon repressor YPA_2817 SM01134 YPA_2817 YPA_2818 SM01007 Class II Aldolase and Adducin N-terminal domain YPA_2819 SM00926 Molybdopterin oxidoreductase Fe4S4 domain YPA_2828 SM00382 ATPases associated with a variety of cellular activities YPA_2831 SM00861 Transketolase, pyrimidine binding domain YPA_2838 SM00382 ATPases associated with a variety of cellular activities YPA_2840 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain YPA_2845 SM01321 YPA_2845 YPA_2846 SM01091 Transporter associated domain YPA_2848 SM00382 ATPases associated with a variety of cellular activities YPA_2848 SM00962 SRP54-type protein, GTPase domain YPA_2848 SM00963 SRP54-type protein, helical bundle domain YPA_2853 SM01321 YPA_2853 YPA_2858 SM00448 cheY-homologous receiver domain YPA_2858 SM00850 LytTr DNA-binding domain YPA_2860 SM00830 Chorismate mutase type II YPA_2862 SM00382 ATPases associated with a variety of cellular activities YPA_2874 SM01192 YPA_2874 YPA_2874 SM01193 YPA_2874 YPA_2877 SM00954 Region found in RelA / SpoT proteins YPA_2880 SM00073 Histidine Phosphotransfer domain YPA_2880 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain YPA_2880 SM00387 Histidine kinase-like ATPases YPA_2880 SM00388 His Kinase A (phosphoacceptor) domain YPA_2880 SM00448 cheY-homologous receiver domain YPA_2881 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. YPA_2882 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. YPA_2892 SM00382 ATPases associated with a variety of cellular activities YPA_2894 SM00487 DEAD-like helicases superfamily YPA_2894 SM00490 helicase superfamily c-terminal domain YPA_2894 SM00847 Helicase associated domain (HA2) Add an annotation YPA_2908 SM00382 ATPases associated with a variety of cellular activities YPA_2909 SM00947 Carbonic anhydrase YPA_2918 SM01321 YPA_2918 YPA_2922 SM00345 helix_turn_helix gluconate operon transcriptional repressor YPA_2922 SM00895 YPA_2922 YPA_2925 SM00644 YPA_2925 YPA_2930 SM01240 YPA_2930 YPA_2934 SM01321 YPA_2934 YPA_2936 SM00382 ATPases associated with a variety of cellular activities YPA_2954 SM00382 ATPases associated with a variety of cellular activities YPA_2955 SM00382 ATPases associated with a variety of cellular activities YPA_2958 SM00345 helix_turn_helix gluconate operon transcriptional repressor YPA_2958 SM00866 YPA_2958 YPA_2963 SM00382 ATPases associated with a variety of cellular activities YPA_2964 SM00382 ATPases associated with a variety of cellular activities YPA_2966 SM00072 Guanylate kinase homologues. YPA_2967 SM00849 Metallo-beta-lactamase superfamily YPA_2968 SM00859 Semialdehyde dehydrogenase, NAD binding domain YPA_2971 SM00382 ATPases associated with a variety of cellular activities YPA_2987 SM00530 Helix-turn-helix XRE-family like proteins YPA_2990 SM00487 DEAD-like helicases superfamily YPA_2990 SM00490 helicase superfamily c-terminal domain YPA_2991 SM00028 Tetratricopeptide repeats YPA_2992 SM00316 Ribosomal protein S1-like RNA-binding domain YPA_2992 SM00322 K homology RNA-binding domain YPA_3005 SM00642 Alpha-amylase domain YPA_3020 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). YPA_3021 SM00382 ATPases associated with a variety of cellular activities YPA_3023 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain YPA_3023 SM01358 YPA_3023 YPA_3026 SM00926 Molybdopterin oxidoreductase Fe4S4 domain YPA_3054 SM00862 Transcriptional regulatory protein, C terminal YPA_3068 SM00858 YPA_3068 YPA_3072 SM00382 ATPases associated with a variety of cellular activities YPA_3076 SM00382 ATPases associated with a variety of cellular activities YPA_3080 SM00382 ATPases associated with a variety of cellular activities YPA_3096 SM01321 YPA_3096 YPA_3113 SM00342 helix_turn_helix, arabinose operon control protein YPA_3119 SM00563 Phosphate acyltransferases YPA_3120 SM00434 DNA Topoisomerase IV YPA_3123 SM00387 Histidine kinase-like ATPases YPA_3123 SM00433 TopoisomeraseII YPA_3138 SM01118 YPA_3138 YPA_3139 SM00287 Bacterial SH3 domain homologues YPA_3140 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. YPA_3142 SM00905 Dihydroneopterin aldolase YPA_3143 SM01207 YPA_3143 YPA_3146 SM00400 zinc finger YPA_3146 SM00493 YPA_3146 YPA_3146 SM00766 DNA primase DnaG DnaB-binding YPA_3154 SM00382 ATPases associated with a variety of cellular activities YPA_3174 SM01217 YPA_3174 YPA_3179 SM00354 helix_turn _helix lactose operon repressor YPA_3181 SM00382 ATPases associated with a variety of cellular activities YPA_3184 SM00869 Autotransporter beta-domain YPA_3190 SM00912 haemagglutination activity domain YPA_3192 SM00327 von Willebrand factor (vWF) type A domain YPA_3194 SM00327 von Willebrand factor (vWF) type A domain YPA_3195 SM00327 von Willebrand factor (vWF) type A domain YPA_3197 SM00220 Serine/Threonine protein kinases, catalytic domain YPA_3201 SM00869 Autotransporter beta-domain YPA_3205 SM01321 YPA_3205 YPA_3207 SM00858 YPA_3207 YPA_3212 SM00345 helix_turn_helix gluconate operon transcriptional repressor YPA_3212 SM00895 YPA_3212 YPA_3224 SM00382 ATPases associated with a variety of cellular activities YPA_3237 SM00422 helix_turn_helix, mercury resistance YPA_3239 SM00662 RNA polymerases D YPA_3240 SM00363 S4 RNA-binding domain YPA_3240 SM01390 YPA_3240 YPA_3252 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. YPA_3253 SM01374 YPA_3253 YPA_3257 SM00322 K homology RNA-binding domain YPA_3260 SM01382 YPA_3260 YPA_3260 SM01383 YPA_3260 YPA_3264 SM01403 YPA_3264 YPA_3267 SM00382 ATPases associated with a variety of cellular activities YPA_3268 SM01321 YPA_3268 YPA_3270 SM00838 Elongation factor G C-terminus YPA_3270 SM00889 Elongation factor G, domain IV YPA_3284 SM00382 ATPases associated with a variety of cellular activities YPA_3289 SM00382 ATPases associated with a variety of cellular activities YPA_3290 SM00062 Bacterial periplasmic substrate-binding proteins YPA_3297 SM00100 Cyclic nucleotide-monophosphate binding domain YPA_3297 SM00419 helix_turn_helix, cAMP Regulatory protein YPA_3304 SM00354 helix_turn _helix lactose operon repressor YPA_3329 SM00363 S4 RNA-binding domain YPA_3332 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain YPA_3332 SM00387 Histidine kinase-like ATPases YPA_3332 SM00388 His Kinase A (phosphoacceptor) domain YPA_3333 SM00448 cheY-homologous receiver domain YPA_3333 SM00862 Transcriptional regulatory protein, C terminal YPA_3335 SM00316 Ribosomal protein S1-like RNA-binding domain YPA_3335 SM00732 Likely ribonuclease with RNase H fold. YPA_3336 SM00899 YPA_3336 YPA_3346 SM00421 helix_turn_helix, Lux Regulon YPA_3347 SM00450 Rhodanese Homology Domain YPA_3349 SM00420 helix_turn_helix, Deoxyribose operon repressor YPA_3349 SM01134 YPA_3349 YPA_3351 SM00382 ATPases associated with a variety of cellular activities YPA_3354 SM00052 Putative diguanylate phosphodiesterase YPA_3354 SM00091 PAS domain YPA_3354 SM00267 diguanylate cyclase YPA_3360 SM00869 Autotransporter beta-domain YPA_3361 SM00364 Leucine-rich repeats, bacterial type YPA_3362 SM00364 Leucine-rich repeats, bacterial type YPA_3363 SM01321 YPA_3363 YPA_3364 SM00364 Leucine-rich repeats, bacterial type YPA_3364 SM00369 Leucine-rich repeats, typical (most populated) subfamily YPA_3369 SM00823 Phosphopantetheine attachment site YPA_3369 SM00825 Beta-ketoacyl synthase YPA_3371 SM00382 ATPases associated with a variety of cellular activities YPA_3379 SM00382 ATPases associated with a variety of cellular activities YPA_3380 SM00382 ATPases associated with a variety of cellular activities YPA_3385 SM00869 Autotransporter beta-domain YPA_3392 SM00354 helix_turn _helix lactose operon repressor YPA_3402 SM00382 ATPases associated with a variety of cellular activities YPA_3402 SM01086 C-terminal, D2-small domain, of ClpB protein YPA_3413 SM00860 SMI1 / KNR4 family YPA_3416 SM00530 Helix-turn-helix XRE-family like proteins YPA_3424 SM00382 ATPases associated with a variety of cellular activities YPA_3433 SM01321 YPA_3433 YPA_3440 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. YPA_3440 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. YPA_3441 SM01004 Delta-aminolevulinic acid dehydratase YPA_3443 SM00382 ATPases associated with a variety of cellular activities YPA_3447 SM00382 ATPases associated with a variety of cellular activities YPA_3448 SM01321 YPA_3448 YPA_3469 SM00448 cheY-homologous receiver domain YPA_3469 SM00862 Transcriptional regulatory protein, C terminal YPA_3470 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain YPA_3470 SM00387 Histidine kinase-like ATPases YPA_3470 SM00388 His Kinase A (phosphoacceptor) domain YPA_3471 SM00342 helix_turn_helix, arabinose operon control protein YPA_3473 SM00971 Serine acetyltransferase, N-terminal YPA_3477 SM00450 Rhodanese Homology Domain YPA_3482 SM00829 Enoylreductase YPA_3490 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain YPA_3490 SM01232 YPA_3490 YPA_3501 SM00532 Ligase N family YPA_3502 SM00072 Guanylate kinase homologues. YPA_3503 SM01409 YPA_3503 YPA_3504 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. YPA_3504 SM00954 Region found in RelA / SpoT proteins YPA_3506 SM00487 DEAD-like helicases superfamily YPA_3506 SM00490 helicase superfamily c-terminal domain YPA_3512 SM00382 ATPases associated with a variety of cellular activities YPA_3517 SM01230 YPA_3517 YPA_3518 SM01321 YPA_3518 YPA_3519 SM00091 PAS domain YPA_3519 SM00387 Histidine kinase-like ATPases YPA_3519 SM00388 His Kinase A (phosphoacceptor) domain YPA_3520 SM00382 ATPases associated with a variety of cellular activities YPA_3520 SM00448 cheY-homologous receiver domain YPA_3521 SM00729 Elongator protein 3, MiaB family, Radical SAM YPA_3524 SM01321 YPA_3524 YPA_3525 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs YPA_3525 SM00474 3'-5' exonuclease YPA_3525 SM00475 5'-3' exonuclease YPA_3525 SM00482 DNA polymerase A domain YPA_3534 SM00382 ATPases associated with a variety of cellular activities YPA_3537 SM00957 SecA DEAD-like domain YPA_3537 SM00958 SecA preprotein cross-linking domain YPA_3541 SM00864 Tubulin/FtsZ family, GTPase domain YPA_3541 SM00865 Tubulin/FtsZ family, C-terminal domain YPA_3542 SM00842 Cell division protein FtsA YPA_3557 SM00354 helix_turn _helix lactose operon repressor YPA_3558 SM01321 YPA_3558 YPA_3563 SM01321 YPA_3563 YPA_3564 SM00917 LeuA allosteric (dimerisation) domain YPA_3565 SM01329 YPA_3565 YPA_3570 SM00382 ATPases associated with a variety of cellular activities YPA_3575 SM00382 ATPases associated with a variety of cellular activities YPA_3577 SM00486 DNA polymerase type-B family YPA_3578 SM00487 DEAD-like helicases superfamily YPA_3578 SM00490 helicase superfamily c-terminal domain YPA_3590 SM00382 ATPases associated with a variety of cellular activities YPA_3590 SM01086 C-terminal, D2-small domain, of ClpB protein YPA_3597 SM00382 ATPases associated with a variety of cellular activities YPA_3601 SM00798 AICARFT/IMPCHase bienzyme YPA_3601 SM00851 MGS-like domain YPA_3602 SM01209 YPA_3602 YPA_3602 SM01210 YPA_3602 YPA_3604 SM00411 bacterial (prokaryotic) histone like domain YPA_3616 SM00876 Biotin and Thiamin Synthesis associated domain YPA_3617 SM01321 YPA_3617 YPA_3618 SM00663 RNA polymerase I subunit A N-terminus YPA_3623 SM00649 Ribosomal protein L11/L12 YPA_3624 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. YPA_3624 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. YPA_3628 SM00382 ATPases associated with a variety of cellular activities YPA_3632 SM00342 helix_turn_helix, arabinose operon control protein YPA_3635 SM01133 YPA_3635 YPA_3637 SM00062 Bacterial periplasmic substrate-binding proteins YPA_3640 SM00382 ATPases associated with a variety of cellular activities YPA_3647 SM00382 ATPases associated with a variety of cellular activities YPA_3655 SM01321 YPA_3655 YPA_3656 SM00357 Cold shock protein domain YPA_3657 SM00357 Cold shock protein domain YPA_3660 SM00849 Metallo-beta-lactamase superfamily YPA_3664 SM00345 helix_turn_helix gluconate operon transcriptional repressor YPA_3664 SM00895 YPA_3664 YPA_3671 SM00878 Biotin carboxylase C-terminal domain YPA_3676 SM00829 Enoylreductase YPA_3677 SM00052 Putative diguanylate phosphodiesterase YPA_3677 SM00267 diguanylate cyclase YPA_3682 SM00316 Ribosomal protein S1-like RNA-binding domain YPA_3709 SM00642 Alpha-amylase domain YPA_3711 SM00354 helix_turn _helix lactose operon repressor YPA_3722 SM00382 ATPases associated with a variety of cellular activities YPA_3726 SM00116 Domain in cystathionine beta-synthase and other proteins. YPA_3728 SM00382 ATPases associated with a variety of cellular activities YPA_3735 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. YPA_3736 SM01321 YPA_3736 YPA_3737 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. YPA_3747 SM00729 Elongator protein 3, MiaB family, Radical SAM YPA_3748 SM00073 Histidine Phosphotransfer domain YPA_3748 SM00091 PAS domain YPA_3748 SM00387 Histidine kinase-like ATPases YPA_3748 SM00388 His Kinase A (phosphoacceptor) domain YPA_3748 SM00448 cheY-homologous receiver domain YPA_3751 SM00749 bacterial OsmY and nodulation domain YPA_3759 SM00382 ATPases associated with a variety of cellular activities YPA_3770 SM00642 Alpha-amylase domain YPA_3771 SM00642 Alpha-amylase domain YPA_3773 SM00257 Lysin motif YPA_3773 SM00634 Bacterial Ig-like domain (group 1) YPA_3777 SM00859 Semialdehyde dehydrogenase, NAD binding domain YPA_3784 SM00354 helix_turn _helix lactose operon repressor YPA_3786 SM00448 cheY-homologous receiver domain YPA_3786 SM00862 Transcriptional regulatory protein, C terminal YPA_3792 SM00382 ATPases associated with a variety of cellular activities YPA_3793 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain YPA_3793 SM00387 Histidine kinase-like ATPases YPA_3793 SM00388 His Kinase A (phosphoacceptor) domain YPA_3793 SM00448 cheY-homologous receiver domain YPA_3796 SM01321 YPA_3796 YPA_3799 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase YPA_3800 SM00235 Zinc-dependent metalloprotease YPA_3812 SM00869 Autotransporter beta-domain YPA_3816 SM00052 Putative diguanylate phosphodiesterase YPA_3824 SM00052 Putative diguanylate phosphodiesterase YPA_3824 SM00267 diguanylate cyclase YPA_3826 SM00382 ATPases associated with a variety of cellular activities YPA_3827 SM00382 ATPases associated with a variety of cellular activities YPA_3832 SM00912 haemagglutination activity domain YPA_3833 SM01321 YPA_3833 YPA_3835 SM00387 Histidine kinase-like ATPases YPA_3836 SM00382 ATPases associated with a variety of cellular activities YPA_3838 SM00382 ATPases associated with a variety of cellular activities YPA_3840 SM00530 Helix-turn-helix XRE-family like proteins YPA_3841 SM00382 ATPases associated with a variety of cellular activities YPA_3846 SM00941 Pyrimidine nucleoside phosphorylase C-terminal domain YPA_3848 SM01133 YPA_3848 YPA_3853 SM00749 bacterial OsmY and nodulation domain YPA_3860 SM00267 diguanylate cyclase YPA_3873 SM00382 ATPases associated with a variety of cellular activities YPA_3877 SM01133 YPA_3877 YPA_3884 SM00342 helix_turn_helix, arabinose operon control protein YPA_3897 SM00382 ATPases associated with a variety of cellular activities YPA_3899 SM00382 ATPases associated with a variety of cellular activities YPA_3903 SM00967 RNA 2'-O ribose methyltransferase substrate binding YPA_3904 SM00316 Ribosomal protein S1-like RNA-binding domain YPA_3904 SM00357 Cold shock protein domain YPA_3904 SM00955 YPA_3904 YPA_3906 SM00788 Adenylosuccinate synthetase YPA_3908 SM00244 prohibitin homologues YPA_3909 SM00244 prohibitin homologues YPA_3913 SM00853 MutL C terminal dimerisation domain YPA_3913 SM01340 YPA_3913 YPA_3914 SM00257 Lysin motif YPA_3914 SM00646 YPA_3914 YPA_3918 SM00479 YPA_3918 YPA_3928 SM00841 Elongation factor P, C-terminal YPA_3928 SM01185 YPA_3928 YPA_3932 SM00883 Chaperonin 10 Kd subunit YPA_3938 SM00926 Molybdopterin oxidoreductase Fe4S4 domain YPA_3942 SM01276 YPA_3942 YPA_3949 SM00342 helix_turn_helix, arabinose operon control protein YPA_3950 SM00342 helix_turn_helix, arabinose operon control protein YPA_3954 SM01007 Class II Aldolase and Adducin N-terminal domain YPA_3956 SM00382 ATPases associated with a variety of cellular activities YPA_3964 SM01005 Alanine racemase, C-terminal domain YPA_3965 SM00382 ATPases associated with a variety of cellular activities YPA_3966 SM00829 Enoylreductase YPA_3972 SM00563 Phosphate acyltransferases YPA_3975 SM00869 Autotransporter beta-domain YPA_3976 SM00060 Fibronectin type 3 domain YPA_3995 SM00729 Elongator protein 3, MiaB family, Radical SAM YPA_4003 SM00382 ATPases associated with a variety of cellular activities YPA_4016 SM00382 ATPases associated with a variety of cellular activities YPA_4024 SM00342 helix_turn_helix, arabinose operon control protein YPA_4028 SM00387 Histidine kinase-like ATPases YPA_4028 SM00388 His Kinase A (phosphoacceptor) domain YPA_4028 SM00448 cheY-homologous receiver domain YPA_4029 SM00421 helix_turn_helix, Lux Regulon YPA_4029 SM00448 cheY-homologous receiver domain YPA_4036 SM00382 ATPases associated with a variety of cellular activities YPA_4040 SM00267 diguanylate cyclase YPA_4042 SM00831 Cation transporter/ATPase, N-terminus YPA_4046 SM00855 Phosphoglycerate mutase family YPA_4047 SM00342 helix_turn_helix, arabinose operon control protein YPA_4047 SM00871 Bacterial transcription activator, effector binding domain YPA_4049 SM00448 cheY-homologous receiver domain YPA_4049 SM00862 Transcriptional regulatory protein, C terminal YPA_4058 SM00852 Probable molybdopterin binding domain YPA_4063 SM00271 DnaJ molecular chaperone homology domain YPA_4067 SM00904 Riboflavin kinase YPA_4072 SM01321 YPA_4072 YPA_4074 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain YPA_4075 SM00851 MGS-like domain YPA_4075 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain YPA_4080 SM01321 YPA_4080 YPA_4086 SM00650 Ribosomal RNA adenine dimethylases YPA_4090 SM00271 DnaJ molecular chaperone homology domain YPA_4097 SM00382 ATPases associated with a variety of cellular activities YPA_4100 SM00421 helix_turn_helix, Lux Regulon YPA_4100 SM00448 cheY-homologous receiver domain YPA_4111 SM00382 ATPases associated with a variety of cellular activities YPA_4116 SM00382 ATPases associated with a variety of cellular activities YPA_4119 SM00530 Helix-turn-helix XRE-family like proteins YPA_4124 SM00342 helix_turn_helix, arabinose operon control protein YPA_4126 SM00382 ATPases associated with a variety of cellular activities YPA_4140 SM00387 Histidine kinase-like ATPases YPA_4140 SM00433 TopoisomeraseII YPA_4142 SM00480 DNA polymerase III beta subunit YPA_4143 SM00382 ATPases associated with a variety of cellular activities YPA_4143 SM00760 Bacterial dnaA protein helix-turn-helix domain YPA_4146 SM01234 YPA_4146 YPA_4156 SM00062 Bacterial periplasmic substrate-binding proteins YPA_4159 SM00382 ATPases associated with a variety of cellular activities YPA_4166 SM00382 ATPases associated with a variety of cellular activities YPA_4175 SM01228 YPA_4175 YPA_CD0002 SM00382 ATPases associated with a variety of cellular activities YPA_CD0014 SM00342 helix_turn_helix, arabinose operon control protein YPA_CD0022 SM00382 ATPases associated with a variety of cellular activities YPA_CD0037 SM00364 Leucine-rich repeats, bacterial type YPA_CD0049 SM00470 ParB-like nuclease domain YPA_CD0059 SM00857 Resolvase, N terminal domain YPA_CD0067 SM00155 Phospholipase D. Active site motifs. YPA_CD0071 SM00220 Serine/Threonine protein kinases, catalytic domain YPA_CD0075 SM00194 Protein tyrosine phosphatase, catalytic domain YPA_CD0075 SM00404 Protein tyrosine phosphatase, catalytic domain motif YPA_MT0002 SM00382 ATPases associated with a variety of cellular activities YPA_MT0008 SM00232 JAB/MPN domain YPA_MT0015 SM00635 Bacterial Ig-like domain 2 YPA_MT0021 SM00635 Bacterial Ig-like domain 2 YPA_MT0030 SM00382 ATPases associated with a variety of cellular activities YPA_MT0031 SM00470 ParB-like nuclease domain YPA_MT0032 SM00470 ParB-like nuclease domain YPA_MT0033 SM00487 DEAD-like helicases superfamily YPA_MT0033 SM00490 helicase superfamily c-terminal domain YPA_MT0038 SM01321 YPA_MT0038 YPA_MT0042 SM00062 Bacterial periplasmic substrate-binding proteins YPA_MT0050 SM00382 ATPases associated with a variety of cellular activities YPA_MT0051 SM00244 prohibitin homologues YPA_MT0054 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs YPA_MT0054 SM00475 5'-3' exonuclease YPA_MT0059 SM00481 DNA polymerase alpha chain like domain YPA_MT0062 SM00382 ATPases associated with a variety of cellular activities YPA_MT0075 SM00155 Phospholipase D. Active site motifs. YPA_MT0079 SM00857 Resolvase, N terminal domain YPA_MT0082 SM00470 ParB-like nuclease domain YPA_MT0083 SM00382 ATPases associated with a variety of cellular activities YPA_MT0090 SM00470 ParB-like nuclease domain YPA_MT0096 SM00342 helix_turn_helix, arabinose operon control protein YPA_PCP0002 SM00382 ATPases associated with a variety of cellular activities YPA_PCP0006 SM00530 Helix-turn-helix XRE-family like proteins