YPA_0001	SSF52218	Flavoproteins
YPA_0002	SSF46785	"Winged helix" DNA-binding domain
YPA_0002	SSF54909	Dimeric alpha+beta barrel
YPA_0003	SSF55681	Class II aaRS and biotin synthetases
YPA_0004	SSF53300	vWA-like
YPA_0005	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPA_0006	SSF46689	Homeodomain-like
YPA_0006	SSF53098	Ribonuclease H-like
YPA_0007	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPA_0010	SSF102546	RbsD-like
YPA_0011	SSF53613	Ribokinase-like
YPA_0013	SSF103473	MFS general substrate transporter
YPA_0014	SSF46785	"Winged helix" DNA-binding domain
YPA_0014	SSF48008	GntR ligand-binding domain-like
YPA_0015	SSF52317	Class I glutamine amidotransferase-like
YPA_0017	SSF51645	Malate synthase G
YPA_0018	SSF51621	Phosphoenolpyruvate/pyruvate domain
YPA_0020	SSF55781	GAF domain-like
YPA_0021	SSF47644	Methionine synthase domain
YPA_0021	SSF51717	Dihydropteroate synthetase-like
YPA_0021	SSF52242	Cobalamin (vitamin B12)-binding domain
YPA_0021	SSF56507	Methionine synthase activation domain-like
YPA_0021	SSF82282	Homocysteine S-methyltransferase
YPA_0022	SSF51126	Pectin lyase-like
YPA_0025	SSF53633	Carbamate kinase-like
YPA_0025	SSF55021	ACT-like
YPA_0026	SSF53697	SIS domain
YPA_0028	SSF161098	MetI-like
YPA_0029	SSF160964	MalF N-terminal region-like
YPA_0029	SSF161098	MetI-like
YPA_0030	SSF53850	Periplasmic binding protein-like II
YPA_0032	SSF50331	MOP-like
YPA_0032	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPA_0033	SSF56935	Porins
YPA_0036	SSF141452	Hcp1-like
YPA_0039	SSF160719	gpW/gp25-like
YPA_0041	SSF53098	Ribonuclease H-like
YPA_0042	SSF46689	Homeodomain-like
YPA_0042	SSF48295	TrpR-like
YPA_0043	SSF47060	S15/NS1 RNA-binding domain
YPA_0044	SSF55120	Pseudouridine synthase
YPA_0044	SSF88697	PUA domain-like
YPA_0045	SSF89919	Ribosome-binding factor A, RbfA
YPA_0046	SSF46955	Putative DNA-binding domain
YPA_0046	SSF50447	Translation proteins
YPA_0046	SSF52156	Initiation factor IF2/eIF5b, domain 3
YPA_0046	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPA_0047	SSF47794	Rad51 N-terminal domain-like
YPA_0047	SSF50249	Nucleic acid-binding proteins
YPA_0047	SSF54814	Prokaryotic type KH domain (KH-domain type II)
YPA_0047	SSF69705	Transcription factor NusA, N-terminal domain
YPA_0048	SSF74942	YhbC-like, C-terminal domain
YPA_0048	SSF75420	YhbC-like, N-terminal domain
YPA_0050	SSF53738	Phosphoglucomutase, first 3 domains
YPA_0050	SSF55957	Phosphoglucomutase, C-terminal domain
YPA_0051	SSF51717	Dihydropteroate synthetase-like
YPA_0052	SSF140990	FtsH protease domain-like
YPA_0052	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPA_0053	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
YPA_0054	SSF75471	YhbY-like
YPA_0055	SSF46557	GreA transcript cleavage protein, N-terminal domain
YPA_0055	SSF54534	FKBP-like
YPA_0056	SSF56601	beta-lactamase/transpeptidase-like
YPA_0057	SSF52172	CheY-like
YPA_0058	SSF47384	Homodimeric domain of signal transducing histidine kinase
YPA_0058	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
YPA_0059	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPA_0059	SSF82051	Obg GTP-binding protein N-terminal domain
YPA_0060	SSF103481	Multidrug resistance efflux transporter EmrE
YPA_0061	SSF110324	Ribosomal L27 protein-like
YPA_0062	SSF141091	L21p-like
YPA_0063	SSF48576	Terpenoid synthases
YPA_0064	SSF46955	Putative DNA-binding domain
YPA_0065	SSF47413	lambda repressor-like DNA-binding domains
YPA_0066	SSF51735	NAD(P)-binding Rossmann-fold domains
YPA_0066	SSF56327	LDH C-terminal domain-like
YPA_0067	SSF46785	"Winged helix" DNA-binding domain
YPA_0067	SSF55252	C-terminal domain of arginine repressor
YPA_0068	SSF159871	YdgH-like
YPA_0069	SSF51984	MurCD N-terminal domain
YPA_0069	SSF53244	MurD-like peptide ligases, peptide-binding domain
YPA_0069	SSF53623	MurD-like peptide ligases, catalytic domain
YPA_0070	SSF56655	Carbohydrate phosphatase
YPA_0071	SSF50324	Inorganic pyrophosphatase
YPA_0072	SSF110857	Gamma-glutamyl cyclotransferase-like
YPA_0075	SSF55068	Peptide methionine sulfoxide reductase
YPA_0076	SSF54631	CBS-domain pair
YPA_0076	SSF56176	FAD-binding/transporter-associated domain-like
YPA_0078	SSF52833	Thioredoxin-like
YPA_0079	SSF56655	Carbohydrate phosphatase
YPA_0080	SSF55816	5'-nucleotidase (syn. UDP-sugar hydrolase), C-terminal domain
YPA_0080	SSF56300	Metallo-dependent phosphatases
YPA_0082	SSF54534	FKBP-like
YPA_0085	SSF143422	Transposase IS200-like
YPA_0086	SSF55653	Ribosomal protein L9 C-domain
YPA_0086	SSF55658	L9 N-domain-like
YPA_0087	SSF46911	Ribosomal protein S18
YPA_0088	SSF50249	Nucleic acid-binding proteins
YPA_0089	SSF54995	Ribosomal protein S6
YPA_0091	SSF53474	alpha/beta-Hydrolases
YPA_0092	SSF46689	Homeodomain-like
YPA_0092	SSF53098	Ribonuclease H-like
YPA_0093	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPA_0095	SSF51621	Phosphoenolpyruvate/pyruvate domain
YPA_0096	SSF53187	Zn-dependent exopeptidases
YPA_0096	SSF55031	Bacterial exopeptidase dimerisation domain
YPA_0097	SSF51735	NAD(P)-binding Rossmann-fold domains
YPA_0097	SSF55347	Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
YPA_0098	SSF53633	Carbamate kinase-like
YPA_0099	SSF48557	L-aspartase-like
YPA_0100	SSF56935	Porins
YPA_0101	SSF54621	Heme-binding protein A (HasA)
YPA_0102	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPA_0102	SSF90123	ABC transporter transmembrane region
YPA_0103	SSF111369	HlyD-like secretion proteins
YPA_0104	SSF74653	TolA/TonB C-terminal domain
YPA_0105	SSF51905	FAD/NAD(P)-binding domain
YPA_0105	SSF55424	FAD/NAD-linked reductases, dimerisation (C-terminal) domain
YPA_0106	SSF52833	Thioredoxin-like
YPA_0107	SSF46785	"Winged helix" DNA-binding domain
YPA_0107	SSF53850	Periplasmic binding protein-like II
YPA_0108	SSF51905	FAD/NAD(P)-binding domain
YPA_0108	SSF55424	FAD/NAD-linked reductases, dimerisation (C-terminal) domain
YPA_0109	SSF46689	Homeodomain-like
YPA_0111	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
YPA_0112	SSF56935	Porins
YPA_0113	SSF53681	Aspartate/glutamate racemase
YPA_0114	SSF53822	Periplasmic binding protein-like I
YPA_0115	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPA_0118	SSF46785	"Winged helix" DNA-binding domain
YPA_0118	SSF53850	Periplasmic binding protein-like II
YPA_0120	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPA_0120	SSF54211	Ribosomal protein S5 domain 2-like
YPA_0121	SSF52467	DHS-like NAD/FAD-binding domain
YPA_0121	SSF52518	Thiamin diphosphate-binding fold (THDP-binding)
YPA_0122	SSF55021	ACT-like
YPA_0123	SSF56752	D-aminoacid aminotransferase-like PLP-dependent enzymes
YPA_0124	SSF143975	IlvD/EDD N-terminal domain-like
YPA_0124	SSF52016	LeuD/IlvD-like
YPA_0125	SSF53686	Tryptophan synthase beta subunit-like PLP-dependent enzymes
YPA_0125	SSF55021	ACT-like
YPA_0131	SSF46785	"Winged helix" DNA-binding domain
YPA_0131	SSF53850	Periplasmic binding protein-like II
YPA_0132	SSF48179	6-phosphogluconate dehydrogenase C-terminal domain-like
YPA_0132	SSF51735	NAD(P)-binding Rossmann-fold domains
YPA_0133	SSF69369	Cloacin translocation domain
YPA_0135	SSF54060	His-Me finger endonucleases
YPA_0136	SSF47345	Colicin E immunity proteins
YPA_0138	SSF49354	PapD-like
YPA_0138	SSF49584	Periplasmic chaperone C-domain
YPA_0139	SSF49401	Bacterial adhesins
YPA_0140	SSF141729	FimD N-terminal domain-like
YPA_0141	SSF49354	PapD-like
YPA_0141	SSF49584	Periplasmic chaperone C-domain
YPA_0142	SSF49401	Bacterial adhesins
YPA_0144	SSF50969	YVTN repeat-like/Quinoprotein amine dehydrogenase
YPA_0145	SSF54534	FKBP-like
YPA_0146	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPA_0147	SSF109604	HD-domain/PDEase-like
YPA_0147	SSF53067	Actin-like ATPase domain
YPA_0148	SSF53067	Actin-like ATPase domain
YPA_0149	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPA_0150	SSF52833	Thioredoxin-like
YPA_0151	SSF50249	Nucleic acid-binding proteins
YPA_0151	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPA_0151	SSF68912	Rho N-terminal domain-like
YPA_0153	SSF160355	Bacterial polysaccharide co-polymerase-like
YPA_0154	SSF53756	UDP-Glycosyltransferase/glycogen phosphorylase
YPA_0155	SSF48179	6-phosphogluconate dehydrogenase C-terminal domain-like
YPA_0155	SSF51735	NAD(P)-binding Rossmann-fold domains
YPA_0155	SSF52413	UDP-glucose/GDP-mannose dehydrogenase C-terminal domain
YPA_0156	SSF51735	NAD(P)-binding Rossmann-fold domains
YPA_0157	SSF53448	Nucleotide-diphospho-sugar transferases
YPA_0158	SSF55729	Acyl-CoA N-acyltransferases (Nat)
YPA_0159	SSF53383	PLP-dependent transferases
YPA_0165	SSF46689	Homeodomain-like
YPA_0165	SSF53098	Ribonuclease H-like
YPA_0166	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPA_0168	SSF143422	Transposase IS200-like
YPA_0169	SSF48452	TPR-like
YPA_0171	SSF69618	HemD-like
YPA_0172	SSF53850	Periplasmic binding protein-like II
YPA_0172	SSF54782	Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain
YPA_0175	SSF55387	Frataxin/Nqo15-like
YPA_0177	SSF54506	Diaminopimelate epimerase-like
YPA_0179	SSF47823	lambda integrase-like, N-terminal domain
YPA_0179	SSF56349	DNA breaking-rejoining enzymes
YPA_0180	SSF56784	HAD-like
YPA_0181	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPA_0182	SSF46689	Homeodomain-like
YPA_0184	SSF51621	Phosphoenolpyruvate/pyruvate domain
YPA_0185	SSF143865	CorA soluble domain-like
YPA_0185	SSF144083	Magnesium transport protein CorA, transmembrane region
YPA_0186	SSF103481	Multidrug resistance efflux transporter EmrE
YPA_0187	SSF54637	Thioesterase/thiol ester dehydrase-isomerase
YPA_0188	SSF56931	Outer membrane phospholipase A (OMPLA)
YPA_0189	SSF47819	HRDC-like
YPA_0189	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPA_0192	SSF53474	alpha/beta-Hydrolases
YPA_0193	SSF56784	HAD-like
YPA_0195	SSF51695	PLC-like phosphodiesterases
YPA_0196	SSF51905	FAD/NAD(P)-binding domain
YPA_0197	SSF51905	FAD/NAD(P)-binding domain
YPA_0198	SSF46548	alpha-helical ferredoxin
YPA_0201	SSF64307	SirA-like
YPA_0202	SSF55008	HMA, heavy metal-associated domain
YPA_0202	SSF56784	HAD-like
YPA_0202	SSF81653	Calcium ATPase, transduction domain A
YPA_0202	SSF81665	Calcium ATPase, transmembrane domain M
YPA_0207	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
YPA_0208	SSF47364	Domain of the SRP/SRP receptor G-proteins
YPA_0208	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPA_0209	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPA_0211	SSF88659	Sigma3 and sigma4 domains of RNA polymerase sigma factors
YPA_0211	SSF88946	Sigma2 domain of RNA polymerase sigma factors
YPA_0212	SSF143422	Transposase IS200-like
YPA_0213	SSF55729	Acyl-CoA N-acyltransferases (Nat)
YPA_0214	SSF53822	Periplasmic binding protein-like I
YPA_0215	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPA_0216	SSF46689	Homeodomain-like
YPA_0216	SSF53098	Ribonuclease H-like
YPA_0219	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPA_0220	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPA_0225	SSF49354	PapD-like
YPA_0228	SSF53850	Periplasmic binding protein-like II
YPA_0229	SSF161098	MetI-like
YPA_0230	SSF161098	MetI-like
YPA_0231	SSF50331	MOP-like
YPA_0231	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPA_0232	SSF51695	PLC-like phosphodiesterases
YPA_0234	SSF103481	Multidrug resistance efflux transporter EmrE
YPA_0235	SSF46785	"Winged helix" DNA-binding domain
YPA_0235	SSF53850	Periplasmic binding protein-like II
YPA_0236	SSF51726	UROD/MetE-like
YPA_0237	SSF53474	alpha/beta-Hydrolases
YPA_0238	SSF53167	Purine and uridine phosphorylases
YPA_0239	SSF52799	(Phosphotyrosine protein) phosphatases II
YPA_0243	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
YPA_0244	SSF55718	SCP-like
YPA_0245	SSF56112	Protein kinase-like (PK-like)
YPA_0249	SSF51556	Metallo-dependent hydrolases
YPA_0250	SSF46689	Homeodomain-like
YPA_0250	SSF53098	Ribonuclease H-like
YPA_0251	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPA_0253	SSF89562	RraA-like
YPA_0255	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPA_0256	SSF56235	N-terminal nucleophile aminohydrolases (Ntn hydrolases)
YPA_0257	SSF110997	Sporulation related repeat
YPA_0258	SSF47413	lambda repressor-like DNA-binding domains
YPA_0258	SSF53822	Periplasmic binding protein-like I
YPA_0259	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPA_0260	SSF143800	L28p-like
YPA_0262	SSF47598	Ribbon-helix-helix
YPA_0263	SSF53383	PLP-dependent transferases
YPA_0264	SSF53383	PLP-dependent transferases
YPA_0265	SSF51735	NAD(P)-binding Rossmann-fold domains
YPA_0265	SSF53633	Carbamate kinase-like
YPA_0265	SSF55347	Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
YPA_0266	SSF51730	FAD-linked oxidoreductase
YPA_0267	SSF53098	Ribonuclease H-like
YPA_0268	SSF46689	Homeodomain-like
YPA_0268	SSF48295	TrpR-like
YPA_0269	SSF103473	MFS general substrate transporter
YPA_0270	SSF56935	Porins
YPA_0271	SSF51905	FAD/NAD(P)-binding domain
YPA_0273	SSF55729	Acyl-CoA N-acyltransferases (Nat)
YPA_0276	SSF103473	MFS general substrate transporter
YPA_0277	SSF49482	Aromatic compound dioxygenase
YPA_0278	SSF53474	alpha/beta-Hydrolases
YPA_0279	SSF46894	C-terminal effector domain of the bipartite response regulators
YPA_0279	SSF75516	Pheromone-binding domain of LuxR-like quorum-sensing transcription factors
YPA_0280	SSF55729	Acyl-CoA N-acyltransferases (Nat)
YPA_0288	SSF103088	OmpA-like
YPA_0289	SSF141452	Hcp1-like
YPA_0290	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPA_0290	SSF81923	Double Clp-N motif
YPA_0291	SSF69255	gp5 N-terminal domain-like
YPA_0291	SSF69279	Phage tail proteins
YPA_0292	SSF53955	Lysozyme-like
YPA_0297	SSF51261	Duplicated hybrid motif
YPA_0297	SSF53955	Lysozyme-like
YPA_0302	SSF56349	DNA breaking-rejoining enzymes
YPA_0304	SSF52172	CheY-like
YPA_0304	SSF53383	PLP-dependent transferases
YPA_0304	SSF55904	Ornithine decarboxylase C-terminal domain
YPA_0305	SSF53822	Periplasmic binding protein-like I
YPA_0306	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPA_0308	SSF56935	Porins
YPA_0309	SSF53807	"Helical backbone" metal receptor
YPA_0310	SSF53955	Lysozyme-like
YPA_0311	SSF111148	YggX-like
YPA_0312	SSF48150	DNA-glycosylase
YPA_0312	SSF55811	Nudix
YPA_0313	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
YPA_0315	SSF56601	beta-lactamase/transpeptidase-like
YPA_0318	SSF51120	beta-Roll
YPA_0318	SSF69318	Integrin alpha N-terminal domain
YPA_0319	SSF102114	Radical SAM enzymes
YPA_0320	SSF52972	ITPase-like
YPA_0321	SSF69786	YggU-like
YPA_0323	SSF48179	6-phosphogluconate dehydrogenase C-terminal domain-like
YPA_0323	SSF51735	NAD(P)-binding Rossmann-fold domains
YPA_0324	SSF51419	PLP-binding barrel
YPA_0325	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPA_0326	SSF55909	Pentein
YPA_0327	SSF56317	Carbon-nitrogen hydrolase
YPA_0328	SSF53098	Ribonuclease H-like
YPA_0329	SSF143456	VC0467-like
YPA_0330	SSF52440	PreATP-grasp domain
YPA_0330	SSF56059	Glutathione synthetase ATP-binding domain-like
YPA_0331	SSF75217	alpha/beta knot
YPA_0331	SSF88697	PUA domain-like
YPA_0333	SSF54060	His-Me finger endonucleases
YPA_0335	SSF55973	S-adenosylmethionine synthetase
YPA_0336	SSF50621	Alanine racemase C-terminal domain-like
YPA_0336	SSF51419	PLP-binding barrel
YPA_0337	SSF143422	Transposase IS200-like
YPA_0338	SSF50022	ISP domain
YPA_0340	SSF52518	Thiamin diphosphate-binding fold (THDP-binding)
YPA_0340	SSF52922	TK C-terminal domain-like
YPA_0341	SSF143422	Transposase IS200-like
YPA_0342	SSF51735	NAD(P)-binding Rossmann-fold domains
YPA_0342	SSF55347	Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
YPA_0343	SSF53748	Phosphoglycerate kinase
YPA_0344	SSF51569	Aldolase
YPA_0345	SSF50182	Sm-like ribonucleoproteins
YPA_0345	SSF82689	Mechanosensitive channel protein MscS (YggB), C-terminal domain
YPA_0345	SSF82861	Mechanosensitive channel protein MscS (YggB), transmembrane region
YPA_0347	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPA_0348	SSF46689	Homeodomain-like
YPA_0348	SSF53098	Ribonuclease H-like
YPA_0351	SSF46785	"Winged helix" DNA-binding domain
YPA_0351	SSF53850	Periplasmic binding protein-like II
YPA_0352	SSF100950	NagB/RpiA/CoA transferase-like
YPA_0352	SSF75445	D-ribose-5-phosphate isomerase (RpiA), lid domain
YPA_0353	SSF51735	NAD(P)-binding Rossmann-fold domains
YPA_0353	SSF52283	Formate/glycerate dehydrogenase catalytic domain-like
YPA_0353	SSF55021	ACT-like
YPA_0354	SSF100950	NagB/RpiA/CoA transferase-like
YPA_0355	SSF102829	Cell division protein ZapA-like
YPA_0356	SSF101327	YgfB-like
YPA_0357	SSF53092	Creatinase/prolidase N-terminal domain
YPA_0357	SSF55920	Creatinase/aminopeptidase
YPA_0358	SSF51905	FAD/NAD(P)-binding domain
YPA_0359	SSF51905	FAD/NAD(P)-binding domain
YPA_0360	SSF101790	Aminomethyltransferase beta-barrel domain
YPA_0360	SSF103025	Folate-binding domain
YPA_0361	SSF51230	Single hybrid motif
YPA_0362	SSF53383	PLP-dependent transferases
YPA_0366	SSF101967	Adhesin YadA, collagen-binding domain
YPA_0366	SSF54523	Pili subunits
YPA_0370	SSF101790	Aminomethyltransferase beta-barrel domain
YPA_0370	SSF103025	Folate-binding domain
YPA_0371	SSF109910	YgfY-like
YPA_0373	SSF46894	C-terminal effector domain of the bipartite response regulators
YPA_0373	SSF52172	CheY-like
YPA_0374	SSF103190	Sensory domain-like
YPA_0374	SSF47384	Homodimeric domain of signal transducing histidine kinase
YPA_0374	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
YPA_0376	SSF52218	Flavoproteins
YPA_0377	SSF47823	lambda integrase-like, N-terminal domain
YPA_0377	SSF56349	DNA breaking-rejoining enzymes
YPA_0378	SSF52833	Thioredoxin-like
YPA_0378	SSF54423	DsbC/DsbG N-terminal domain-like
YPA_0379	SSF64182	DHH phosphoesterases
YPA_0380	SSF75620	Release factor
YPA_0381	SSF50249	Nucleic acid-binding proteins
YPA_0381	SSF55681	Class II aaRS and biotin synthetases
YPA_0383	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPA_0384	SSF46689	Homeodomain-like
YPA_0384	SSF53098	Ribonuclease H-like
YPA_0385	SSF56349	DNA breaking-rejoining enzymes
YPA_0388	SSF143011	RelE-like
YPA_0389	SSF47413	lambda repressor-like DNA-binding domains
YPA_0391	SSF47413	lambda repressor-like DNA-binding domains
YPA_0392	SSF46785	"Winged helix" DNA-binding domain
YPA_0392	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPA_0392	SSF57783	Zinc beta-ribbon
YPA_0395	SSF46955	Putative DNA-binding domain
YPA_0399	SSF140931	Fic-like
YPA_0400	SSF69369	Cloacin translocation domain
YPA_0407	SSF46785	"Winged helix" DNA-binding domain
YPA_0408	SSF54001	Cysteine proteinases
YPA_0410	SSF53822	Periplasmic binding protein-like I
YPA_0412	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPA_0413	SSF50331	MOP-like
YPA_0413	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPA_0414	SSF53850	Periplasmic binding protein-like II
YPA_0415	SSF160964	MalF N-terminal region-like
YPA_0415	SSF161098	MetI-like
YPA_0416	SSF161098	MetI-like
YPA_0417	SSF51445	(Trans)glycosidases
YPA_0418	SSF51445	(Trans)glycosidases
YPA_0418	SSF52317	Class I glutamine amidotransferase-like
YPA_0419	SSF55604	Glucose permease domain IIB
YPA_0420	SSF56935	Porins
YPA_0421	SSF47413	lambda repressor-like DNA-binding domains
YPA_0421	SSF53822	Periplasmic binding protein-like I
YPA_0422	SSF51011	Glycosyl hydrolase domain
YPA_0422	SSF51445	(Trans)glycosidases
YPA_0422	SSF74650	Galactose mutarotase-like
YPA_0423	SSF103473	MFS general substrate transporter
YPA_0424	SSF47413	lambda repressor-like DNA-binding domains
YPA_0424	SSF53822	Periplasmic binding protein-like I
YPA_0425	SSF52317	Class I glutamine amidotransferase-like
YPA_0426	SSF51569	Aldolase
YPA_0428	SSF53649	Alkaline phosphatase-like
YPA_0429	SSF102114	Radical SAM enzymes
YPA_0430	SSF48208	Six-hairpin glycosidases
YPA_0431	SSF51735	NAD(P)-binding Rossmann-fold domains
YPA_0432	SSF51338	Composite domain of metallo-dependent hydrolases
YPA_0432	SSF51556	Metallo-dependent hydrolases
YPA_0433	SSF53062	PTS system fructose IIA component-like
YPA_0436	SSF52728	PTS IIb component
YPA_0437	SSF53697	SIS domain
YPA_0438	SSF51569	Aldolase
YPA_0439	SSF100950	NagB/RpiA/CoA transferase-like
YPA_0439	SSF46785	"Winged helix" DNA-binding domain
YPA_0440	SSF53649	Alkaline phosphatase-like
YPA_0441	SSF143422	Transposase IS200-like
YPA_0442	SSF46689	Homeodomain-like
YPA_0442	SSF53098	Ribonuclease H-like
YPA_0443	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPA_0445	SSF48230	Chondroitin AC/alginate lyase
YPA_0445	SSF49785	Galactose-binding domain-like
YPA_0445	SSF49863	Hyaluronate lyase-like, C-terminal domain
YPA_0445	SSF74650	Galactose mutarotase-like
YPA_0446	SSF103515	Autotransporter
YPA_0450	SSF53056	beta-carbonic anhydrase, cab
YPA_0451	SSF46894	C-terminal effector domain of the bipartite response regulators
YPA_0454	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPA_0456	SSF54523	Pili subunits
YPA_0458	SSF54523	Pili subunits
YPA_0459	SSF54523	Pili subunits
YPA_0460	SSF158544	GspK insert domain-like
YPA_0461	SSF53067	Actin-like ATPase domain
YPA_0465	SSF46894	C-terminal effector domain of the bipartite response regulators
YPA_0467	SSF47170	Aspartate receptor, ligand-binding domain
YPA_0467	SSF58104	Methyl-accepting chemotaxis protein (MCP) signaling domain
YPA_0468	SSF52833	Thioredoxin-like
YPA_0469	SSF56281	Metallo-hydrolase/oxidoreductase
YPA_0470	SSF46785	"Winged helix" DNA-binding domain
YPA_0470	SSF53850	Periplasmic binding protein-like II
YPA_0471	SSF103473	MFS general substrate transporter
YPA_0472	SSF46785	"Winged helix" DNA-binding domain
YPA_0472	SSF53850	Periplasmic binding protein-like II
YPA_0473	SSF50621	Alanine racemase C-terminal domain-like
YPA_0473	SSF51419	PLP-binding barrel
YPA_0474	SSF47413	lambda repressor-like DNA-binding domains
YPA_0474	SSF53822	Periplasmic binding protein-like I
YPA_0475	SSF50692	ADC-like
YPA_0475	SSF53706	Formate dehydrogenase/DMSO reductase, domains 1-3
YPA_0476	SSF56801	Acetyl-CoA synthetase-like
YPA_0476	SSF69593	Glycerol-3-phosphate (1)-acyltransferase
YPA_0477	SSF103473	MFS general substrate transporter
YPA_0479	SSF51430	NAD(P)-linked oxidoreductase
YPA_0481	SSF52980	Restriction endonuclease-like
YPA_0482	SSF55811	Nudix
YPA_0483	SSF47831	Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain
YPA_0483	SSF51621	Phosphoenolpyruvate/pyruvate domain
YPA_0483	SSF52009	Phosphohistidine domain
YPA_0483	SSF55781	GAF domain-like
YPA_0485	SSF55831	Thymidylate synthase/dCMP hydroxymethylase
YPA_0486	SSF54523	Pili subunits
YPA_0490	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPA_0490	SSF52980	Restriction endonuclease-like
YPA_0491	SSF63411	LuxS/MPP-like metallohydrolase
YPA_0492	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPA_0492	SSF52980	Restriction endonuclease-like
YPA_0493	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPA_0494	SSF53633	Carbamate kinase-like
YPA_0494	SSF55729	Acyl-CoA N-acyltransferases (Nat)
YPA_0495	SSF53187	Zn-dependent exopeptidases
YPA_0496	SSF50685	Barwin-like endoglucanases
YPA_0497	SSF69572	Activating enzymes of the ubiquitin-like proteins
YPA_0498	SSF82649	SufE/NifU
YPA_0499	SSF53383	PLP-dependent transferases
YPA_0500	SSF46785	"Winged helix" DNA-binding domain
YPA_0500	SSF53850	Periplasmic binding protein-like II
YPA_0502	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
YPA_0504	SSF46689	Homeodomain-like
YPA_0504	SSF53098	Ribonuclease H-like
YPA_0505	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPA_0506	SSF47807	5' to 3' exonuclease, C-terminal subdomain
YPA_0506	SSF88723	PIN domain-like
YPA_0507	SSF102405	MCP/YpsA-like
YPA_0508	SSF55620	Tetrahydrobiopterin biosynthesis enzymes-like
YPA_0510	SSF143422	Transposase IS200-like
YPA_0511	SSF158452	YqcC-like
YPA_0512	SSF55120	Pseudouridine synthase
YPA_0513	SSF52218	Flavoproteins
YPA_0515	SSF51161	Trimeric LpxA-like enzymes
YPA_0516	SSF109604	HD-domain/PDEase-like
YPA_0516	SSF55021	ACT-like
YPA_0516	SSF81301	Nucleotidyltransferase
YPA_0516	SSF81593	Nucleotidyltransferase substrate binding subunit/domain
YPA_0516	SSF81891	Poly A polymerase C-terminal region-like
YPA_0517	SSF55920	Creatinase/aminopeptidase
YPA_0518	SSF52313	Ribosomal protein S2
YPA_0520	SSF46934	UBA-like
YPA_0520	SSF54713	Elongation factor Ts (EF-Ts), dimerisation domain
YPA_0521	SSF143422	Transposase IS200-like
YPA_0522	SSF53633	Carbamate kinase-like
YPA_0523	SSF55194	Ribosome recycling factor, RRF
YPA_0524	SSF51735	NAD(P)-binding Rossmann-fold domains
YPA_0524	SSF55347	Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
YPA_0524	SSF69055	1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain
YPA_0525	SSF64005	Undecaprenyl diphosphate synthase
YPA_0527	SSF50156	PDZ domain-like
YPA_0529	SSF111384	OmpH-like
YPA_0530	SSF51161	Trimeric LpxA-like enzymes
YPA_0531	SSF54637	Thioesterase/thiol ester dehydrase-isomerase
YPA_0532	SSF51161	Trimeric LpxA-like enzymes
YPA_0533	SSF53756	UDP-Glycosyltransferase/glycogen phosphorylase
YPA_0534	SSF53098	Ribonuclease H-like
YPA_0535	SSF89550	PHP domain-like
YPA_0536	SSF52096	ClpP/crotonase
YPA_0537	SSF54593	Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
YPA_0538	SSF52402	Adenine nucleotide alpha hydrolases-like
YPA_0538	SSF56037	PheT/TilS domain
YPA_0538	SSF82829	MesJ substrate recognition domain-like
YPA_0539	SSF46626	Cytochrome c
YPA_0540	SSF101744	Rof/RNase P subunit-like
YPA_0542	SSF52980	Restriction endonuclease-like
YPA_0543	SSF75620	Release factor
YPA_0545	SSF52954	Class II aaRS ABD-related
YPA_0545	SSF55681	Class II aaRS and biotin synthetases
YPA_0545	SSF55826	YbaK/ProRS associated domain
YPA_0546	SSF118196	YaeB-like
YPA_0548	SSF53850	Periplasmic binding protein-like II
YPA_0549	SSF161098	MetI-like
YPA_0550	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPA_0550	SSF55021	ACT-like
YPA_0551	SSF56784	HAD-like
YPA_0553	SSF51430	NAD(P)-linked oxidoreductase
YPA_0555	SSF56219	DNase I-like
YPA_0556	SSF53955	Lysozyme-like
YPA_0556	SSF54106	LysM domain
YPA_0557	SSF56281	Metallo-hydrolase/oxidoreductase
YPA_0558	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
YPA_0559	SSF53098	Ribonuclease H-like
YPA_0560	SSF53098	Ribonuclease H-like
YPA_0562	SSF88713	Glycoside hydrolase/deacetylase
YPA_0563	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPA_0564	SSF46689	Homeodomain-like
YPA_0564	SSF53098	Ribonuclease H-like
YPA_0567	SSF47413	lambda repressor-like DNA-binding domains
YPA_0568	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPA_0569	SSF57783	Zinc beta-ribbon
YPA_0572	SSF56349	DNA breaking-rejoining enzymes
YPA_0577	SSF56349	DNA breaking-rejoining enzymes
YPA_0578	SSF143422	Transposase IS200-like
YPA_0579	SSF74982	Small protein B (SmpB)
YPA_0580	SSF55961	Bet v1-like
YPA_0581	SSF54285	MoaD/ThiS
YPA_0583	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPA_0584	SSF111331	NAD kinase/diacylglycerol kinase-like
YPA_0585	SSF51064	Head domain of nucleotide exchange factor GrpE
YPA_0585	SSF58014	Coiled-coil domain of nucleotide exchange factor GrpE
YPA_0586	SSF48256	Citrate synthase
YPA_0587	SSF81343	Fumarate reductase respiratory complex transmembrane subunits
YPA_0588	SSF81343	Fumarate reductase respiratory complex transmembrane subunits
YPA_0589	SSF46977	Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain
YPA_0589	SSF51905	FAD/NAD(P)-binding domain
YPA_0589	SSF56425	Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain
YPA_0590	SSF46548	alpha-helical ferredoxin
YPA_0590	SSF54292	2Fe-2S ferredoxin-like
YPA_0591	SSF52518	Thiamin diphosphate-binding fold (THDP-binding)
YPA_0592	SSF47005	Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex
YPA_0592	SSF51230	Single hybrid motif
YPA_0592	SSF52777	CoA-dependent acyltransferases
YPA_0593	SSF52210	Succinyl-CoA synthetase domains
YPA_0593	SSF56059	Glutathione synthetase ATP-binding domain-like
YPA_0594	SSF51735	NAD(P)-binding Rossmann-fold domains
YPA_0594	SSF52210	Succinyl-CoA synthetase domains
YPA_0598	SSF54637	Thioesterase/thiol ester dehydrase-isomerase
YPA_0601	SSF74653	TolA/TonB C-terminal domain
YPA_0602	SSF52964	TolB, N-terminal domain
YPA_0602	SSF69304	Tricorn protease N-terminal domain
YPA_0603	SSF103088	OmpA-like
YPA_0604	SSF48452	TPR-like
YPA_0605	SSF142754	NadA-like
YPA_0607	SSF160240	Cation efflux protein cytoplasmic domain-like
YPA_0607	SSF161111	Cation efflux protein transmembrane domain-like
YPA_0608	SSF51569	Aldolase
YPA_0609	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPA_0610	SSF46689	Homeodomain-like
YPA_0610	SSF53098	Ribonuclease H-like
YPA_0611	SSF56601	beta-lactamase/transpeptidase-like
YPA_0611	SSF69189	Penicillin-binding protein associated domain
YPA_0613	SSF100950	NagB/RpiA/CoA transferase-like
YPA_0614	SSF51569	Aldolase
YPA_0615	SSF48317	Acid phosphatase/Vanadium-dependent haloperoxidase
YPA_0616	SSF48317	Acid phosphatase/Vanadium-dependent haloperoxidase
YPA_0617	SSF116726	TrkA C-terminal domain-like
YPA_0618	SSF52833	Thioredoxin-like
YPA_0621	SSF53850	Periplasmic binding protein-like II
YPA_0622	SSF50331	MOP-like
YPA_0622	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPA_0623	SSF161098	MetI-like
YPA_0624	SSF161098	MetI-like
YPA_0626	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
YPA_0627	SSF53850	Periplasmic binding protein-like II
YPA_0628	SSF117892	Band 7/SPFH domain
YPA_0629	SSF53807	"Helical backbone" metal receptor
YPA_0630	SSF81345	ABC transporter involved in vitamin B12 uptake, BtuC
YPA_0631	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPA_0632	SSF51735	NAD(P)-binding Rossmann-fold domains
YPA_0633	SSF51735	NAD(P)-binding Rossmann-fold domains
YPA_0634	SSF103481	Multidrug resistance efflux transporter EmrE
YPA_0636	SSF161098	MetI-like
YPA_0637	SSF161098	MetI-like
YPA_0638	SSF53850	Periplasmic binding protein-like II
YPA_0639	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPA_0640	SSF48600	Chorismate mutase II
YPA_0643	SSF51735	NAD(P)-binding Rossmann-fold domains
YPA_0644	SSF51735	NAD(P)-binding Rossmann-fold domains
YPA_0645	SSF53383	PLP-dependent transferases
YPA_0647	SSF52467	DHS-like NAD/FAD-binding domain
YPA_0647	SSF52518	Thiamin diphosphate-binding fold (THDP-binding)
YPA_0648	SSF52343	Ferredoxin reductase-like, C-terminal NADP-linked domain
YPA_0648	SSF54292	2Fe-2S ferredoxin-like
YPA_0648	SSF63380	Riboflavin synthase domain-like
YPA_0649	SSF56821	Prismane protein-like
YPA_0651	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPA_0654	SSF111369	HlyD-like secretion proteins
YPA_0655	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPA_0656	SSF50249	Nucleic acid-binding proteins
YPA_0657	SSF54736	ClpS-like
YPA_0658	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPA_0658	SSF81923	Double Clp-N motif
YPA_0659	SSF143422	Transposase IS200-like
YPA_0660	SSF50249	Nucleic acid-binding proteins
YPA_0661	SSF55729	Acyl-CoA N-acyltransferases (Nat)
YPA_0662	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPA_0662	SSF90123	ABC transporter transmembrane region
YPA_0663	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPA_0663	SSF90123	ABC transporter transmembrane region
YPA_0664	SSF51905	FAD/NAD(P)-binding domain
YPA_0665	SSF46785	"Winged helix" DNA-binding domain
YPA_0665	SSF54909	Dimeric alpha+beta barrel
YPA_0666	SSF46785	"Winged helix" DNA-binding domain
YPA_0666	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPA_0666	SSF81995	beta-sandwich domain of Sec23/24
YPA_0667	SSF89392	Prokaryotic lipoproteins and lipoprotein localization factors
YPA_0668	SSF48019	post-AAA+ oligomerization domain-like
YPA_0668	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPA_0669	SSF46589	tRNA-binding arm
YPA_0669	SSF55681	Class II aaRS and biotin synthetases
YPA_0670	SSF103473	MFS general substrate transporter
YPA_0671	SSF103473	MFS general substrate transporter
YPA_0672	SSF102114	Radical SAM enzymes
YPA_0674	SSF51998	PFL-like glycyl radical enzymes
YPA_0677	SSF53774	Glutaminase/Asparaginase
YPA_0678	SSF101967	Adhesin YadA, collagen-binding domain
YPA_0678	SSF54523	Pili subunits
YPA_0679	SSF54523	Pili subunits
YPA_0680	SSF53383	PLP-dependent transferases
YPA_0681	SSF55205	EPT/RTPC-like
YPA_0682	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPA_0683	SSF50249	Nucleic acid-binding proteins
YPA_0684	SSF47729	IHF-like DNA-binding proteins
YPA_0685	SSF56281	Metallo-hydrolase/oxidoreductase
YPA_0686	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPA_0686	SSF90123	ABC transporter transmembrane region
YPA_0687	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPA_0689	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPA_0690	SSF46689	Homeodomain-like
YPA_0690	SSF53098	Ribonuclease H-like
YPA_0692	SSF50249	Nucleic acid-binding proteins
YPA_0693	SSF158997	Trm112p-like
YPA_0694	SSF53448	Nucleotide-diphospho-sugar transferases
YPA_0695	SSF56112	Protein kinase-like (PK-like)
YPA_0696	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
YPA_0697	SSF140570	MukF C-terminal domain-like
YPA_0697	SSF46785	"Winged helix" DNA-binding domain
YPA_0699	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPA_0700	SSF143422	Transposase IS200-like
YPA_0701	SSF141523	L,D-transpeptidase catalytic domain-like
YPA_0701	SSF47090	PGBD-like
YPA_0702	SSF55166	Hedgehog/DD-peptidase
YPA_0703	SSF56281	Metallo-hydrolase/oxidoreductase
YPA_0704	SSF53383	PLP-dependent transferases
YPA_0705	SSF56935	Porins
YPA_0706	SSF56935	Porins
YPA_0707	SSF50249	Nucleic acid-binding proteins
YPA_0707	SSF55681	Class II aaRS and biotin synthetases
YPA_0708	SSF51690	Nicotinate/Quinolinate PRTase C-terminal domain-like
YPA_0708	SSF54675	Nicotinate/Quinolinate PRTase N-terminal domain-like
YPA_0709	SSF55486	Metalloproteases ("zincins"), catalytic domain
YPA_0709	SSF63737	Leukotriene A4 hydrolase N-terminal domain
YPA_0710	SSF51395	FMN-linked oxidoreductases
YPA_0712	SSF141673	MOSC N-terminal domain-like
YPA_0712	SSF50800	PK beta-barrel domain-like
YPA_0712	SSF54292	2Fe-2S ferredoxin-like
YPA_0713	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
YPA_0714	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPA_0717	SSF159594	XCC0632-like
YPA_0718	SSF143422	Transposase IS200-like
YPA_0719	SSF53901	Thiolase-like
YPA_0720	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPA_0721	SSF46689	Homeodomain-like
YPA_0721	SSF53098	Ribonuclease H-like
YPA_0722	SSF53901	Thiolase-like
YPA_0723	SSF54637	Thioesterase/thiol ester dehydrase-isomerase
YPA_0724	SSF54211	Ribosomal protein S5 domain 2-like
YPA_0726	SSF143422	Transposase IS200-like
YPA_0727	SSF103088	OmpA-like
YPA_0727	SSF56925	OMPA-like
YPA_0728	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPA_0729	SSF159894	YgaC/TfoX-N like
YPA_0732	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPA_0733	SSF52335	Methylglyoxal synthase-like
YPA_0735	SSF51735	NAD(P)-binding Rossmann-fold domains
YPA_0736	SSF141255	YccV-like
YPA_0737	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
YPA_0737	SSF88697	PUA domain-like
YPA_0738	SSF54975	Acylphosphatase/BLUF domain-like
YPA_0739	SSF69721	DsrC, the gamma subunit of dissimilatory sulfite reductase
YPA_0740	SSF53098	Ribonuclease H-like
YPA_0744	SSF55729	Acyl-CoA N-acyltransferases (Nat)
YPA_0744	SSF56176	FAD-binding/transporter-associated domain-like
YPA_0745	SSF51735	NAD(P)-binding Rossmann-fold domains
YPA_0747	SSF54637	Thioesterase/thiol ester dehydrase-isomerase
YPA_0748	SSF53901	Thiolase-like
YPA_0749	SSF51735	NAD(P)-binding Rossmann-fold domains
YPA_0750	SSF53901	Thiolase-like
YPA_0751	SSF52096	ClpP/crotonase
YPA_0752	SSF52096	ClpP/crotonase
YPA_0753	SSF51735	NAD(P)-binding Rossmann-fold domains
YPA_0755	SSF47336	ACP-like
YPA_0756	SSF52151	FabD/lysophospholipase-like
YPA_0756	SSF55048	Probable ACP-binding domain of malonyl-CoA ACP transacylase
YPA_0757	SSF46689	Homeodomain-like
YPA_0757	SSF53098	Ribonuclease H-like
YPA_0758	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPA_0763	SSF103088	OmpA-like
YPA_0764	SSF141452	Hcp1-like
YPA_0765	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPA_0765	SSF81923	Double Clp-N motif
YPA_0766	SSF69255	gp5 N-terminal domain-like
YPA_0766	SSF69279	Phage tail proteins
YPA_0767	SSF51261	Duplicated hybrid motif
YPA_0767	SSF53955	Lysozyme-like
YPA_0770	SSF51261	Duplicated hybrid motif
YPA_0770	SSF53955	Lysozyme-like
YPA_0784	SSF160719	gpW/gp25-like
YPA_0787	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPA_0790	SSF69572	Activating enzymes of the ubiquitin-like proteins
YPA_0791	SSF53218	Molybdenum cofactor biosynthesis proteins
YPA_0791	SSF63867	MoeA C-terminal domain-like
YPA_0791	SSF63882	MoeA N-terminal region -like
YPA_0792	SSF102114	Radical SAM enzymes
YPA_0793	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPA_0796	SSF53474	alpha/beta-Hydrolases
YPA_0797	SSF50129	GroES-like
YPA_0797	SSF51735	NAD(P)-binding Rossmann-fold domains
YPA_0798	SSF46785	"Winged helix" DNA-binding domain
YPA_0798	SSF53850	Periplasmic binding protein-like II
YPA_0799	SSF103473	MFS general substrate transporter
YPA_0800	SSF55620	Tetrahydrobiopterin biosynthesis enzymes-like
YPA_0802	SSF53822	Periplasmic binding protein-like I
YPA_0803	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPA_0806	SSF51735	NAD(P)-binding Rossmann-fold domains
YPA_0806	SSF53223	Aminoacid dehydrogenase-like, N-terminal domain
YPA_0807	SSF53927	Cytidine deaminase-like
YPA_0810	SSF103473	MFS general substrate transporter
YPA_0811	SSF51004	C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
YPA_0812	SSF53822	Periplasmic binding protein-like I
YPA_0815	SSF143422	Transposase IS200-like
YPA_0816	SSF47323	Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
YPA_0816	SSF50249	Nucleic acid-binding proteins
YPA_0816	SSF52374	Nucleotidylyl transferase
YPA_0816	SSF57770	Methionyl-tRNA synthetase (MetRS), Zn-domain
YPA_0817	SSF117916	Fe-S cluster assembly (FSCA) domain-like
YPA_0817	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPA_0818	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPA_0819	SSF51283	dUTPase-like
YPA_0821	SSF54631	CBS-domain pair
YPA_0821	SSF56176	FAD-binding/transporter-associated domain-like
YPA_0823	SSF53383	PLP-dependent transferases
YPA_0824	SSF51905	FAD/NAD(P)-binding domain
YPA_0825	SSF55729	Acyl-CoA N-acyltransferases (Nat)
YPA_0827	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPA_0828	SSF81345	ABC transporter involved in vitamin B12 uptake, BtuC
YPA_0829	SSF81345	ABC transporter involved in vitamin B12 uptake, BtuC
YPA_0830	SSF53807	"Helical backbone" metal receptor
YPA_0831	SSF56935	Porins
YPA_0834	SSF53448	Nucleotide-diphospho-sugar transferases
YPA_0835	SSF53448	Nucleotide-diphospho-sugar transferases
YPA_0836	SSF48179	6-phosphogluconate dehydrogenase C-terminal domain-like
YPA_0836	SSF51735	NAD(P)-binding Rossmann-fold domains
YPA_0837	SSF101386	all-alpha NTP pyrophosphatases
YPA_0837	SSF141734	HisI-like
YPA_0838	SSF51366	Ribulose-phoshate binding barrel
YPA_0839	SSF51366	Ribulose-phoshate binding barrel
YPA_0840	SSF52317	Class I glutamine amidotransferase-like
YPA_0842	SSF54211	Ribosomal protein S5 domain 2-like
YPA_0842	SSF56784	HAD-like
YPA_0843	SSF53383	PLP-dependent transferases
YPA_0844	SSF53720	ALDH-like
YPA_0845	SSF53850	Periplasmic binding protein-like II
YPA_0845	SSF54913	GlnB-like
YPA_0846	SSF51735	NAD(P)-binding Rossmann-fold domains
YPA_0849	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPA_0850	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPA_0851	SSF56796	Dehydroquinate synthase-like
YPA_0853	SSF53098	Ribonuclease H-like
YPA_0854	SSF51735	NAD(P)-binding Rossmann-fold domains
YPA_0857	SSF49373	Invasin/intimin cell-adhesion fragments
YPA_0859	SSF103473	MFS general substrate transporter
YPA_0861	SSF51735	NAD(P)-binding Rossmann-fold domains
YPA_0862	SSF56529	FAH
YPA_0863	SSF51604	Enolase C-terminal domain-like
YPA_0863	SSF54826	Enolase N-terminal domain-like
YPA_0864	SSF51395	FMN-linked oxidoreductases
YPA_0865	SSF52402	Adenine nucleotide alpha hydrolases-like
YPA_0865	SSF69864	Argininosuccinate synthetase, C-terminal domain
YPA_0866	SSF52402	Adenine nucleotide alpha hydrolases-like
YPA_0868	SSF103473	MFS general substrate transporter
YPA_0869	SSF88713	Glycoside hydrolase/deacetylase
YPA_0872	SSF46894	C-terminal effector domain of the bipartite response regulators
YPA_0872	SSF52172	CheY-like
YPA_0876	SSF56214	4'-phosphopantetheinyl transferase
YPA_0878	SSF51445	(Trans)glycosidases
YPA_0879	SSF103473	MFS general substrate transporter
YPA_0882	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPA_0883	SSF143422	Transposase IS200-like
YPA_0885	SSF51395	FMN-linked oxidoreductases
YPA_0887	SSF56601	beta-lactamase/transpeptidase-like
YPA_0888	SSF55103	FAD-linked oxidases, C-terminal domain
YPA_0888	SSF56176	FAD-binding/transporter-associated domain-like
YPA_0889	SSF55154	CYTH-like phosphatases
YPA_0894	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPA_0895	SSF53850	Periplasmic binding protein-like II
YPA_0896	SSF161098	MetI-like
YPA_0897	SSF161098	MetI-like
YPA_0899	SSF53822	Periplasmic binding protein-like I
YPA_0900	SSF48371	ARM repeat
YPA_0902	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPA_0903	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPA_0905	SSF53383	PLP-dependent transferases
YPA_0906	SSF52821	Rhodanese/Cell cycle control phosphatase
YPA_0907	SSF53850	Periplasmic binding protein-like II
YPA_0908	SSF53850	Periplasmic binding protein-like II
YPA_0909	SSF161098	MetI-like
YPA_0910	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPA_0910	SSF54631	CBS-domain pair
YPA_0911	SSF161098	MetI-like
YPA_0913	SSF53383	PLP-dependent transferases
YPA_0913	SSF55904	Ornithine decarboxylase C-terminal domain
YPA_0915	SSF103481	Multidrug resistance efflux transporter EmrE
YPA_0917	SSF46689	Homeodomain-like
YPA_0917	SSF53098	Ribonuclease H-like
YPA_0918	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPA_0919	SSF56935	Porins
YPA_0920	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPA_0921	SSF56634	Heme-dependent catalase-like
YPA_0922	SSF56925	OMPA-like
YPA_0924	SSF53218	Molybdenum cofactor biosynthesis proteins
YPA_0925	SSF49772	Ecotin, trypsin inhibitor
YPA_0926	SSF54292	2Fe-2S ferredoxin-like
YPA_0927	SSF47240	Ferritin-like
YPA_0928	SSF48168	R1 subunit of ribonucleotide reductase, N-terminal domain
YPA_0928	SSF51998	PFL-like glycyl radical enzymes
YPA_0929	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
YPA_0930	SSF101904	GyrA/ParC C-terminal domain-like
YPA_0930	SSF56719	Type II DNA topoisomerase
YPA_0931	SSF47384	Homodimeric domain of signal transducing histidine kinase
YPA_0931	SSF52172	CheY-like
YPA_0931	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
YPA_0932	SSF46894	C-terminal effector domain of the bipartite response regulators
YPA_0932	SSF52172	CheY-like
YPA_0933	SSF47226	Histidine-containing phosphotransfer domain, HPT domain
YPA_0934	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
YPA_0935	SSF103473	MFS general substrate transporter
YPA_0936	SSF56935	Porins
YPA_0937	SSF143422	Transposase IS200-like
YPA_0938	SSF143422	Transposase IS200-like
YPA_0939	SSF56601	beta-lactamase/transpeptidase-like
YPA_0941	SSF103473	MFS general substrate transporter
YPA_0942	SSF56281	Metallo-hydrolase/oxidoreductase
YPA_0943	SSF103190	Sensory domain-like
YPA_0943	SSF58104	Methyl-accepting chemotaxis protein (MCP) signaling domain
YPA_0944	SSF69917	OMPT-like
YPA_0945	SSF54857	DNA damage-inducible protein DinI
YPA_0947	SSF47413	lambda repressor-like DNA-binding domains
YPA_0947	SSF51306	LexA/Signal peptidase
YPA_0949	SSF142764	YgbK-like
YPA_0950	SSF53639	AraD/HMP-PK domain-like
YPA_0951	SSF100950	NagB/RpiA/CoA transferase-like
YPA_0951	SSF46785	"Winged helix" DNA-binding domain
YPA_0952	SSF51658	Xylose isomerase-like
YPA_0961	SSF69279	Phage tail proteins
YPA_0967	SSF88874	Receptor-binding domain of short tail fibre protein gp12
YPA_0968	SSF46689	Homeodomain-like
YPA_0968	SSF53697	SIS domain
YPA_0969	SSF51445	(Trans)glycosidases
YPA_0973	SSF54060	His-Me finger endonucleases
YPA_0974	SSF46689	Homeodomain-like
YPA_0974	SSF53098	Ribonuclease H-like
YPA_0975	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPA_0978	SSF53649	Alkaline phosphatase-like
YPA_0979	SSF158651	YejL-like
YPA_0981	SSF143422	Transposase IS200-like
YPA_0982	SSF50715	Ribosomal protein L25-like
YPA_0983	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPA_0983	SSF57829	Zn-binding ribosomal proteins
YPA_0984	SSF55120	Pseudouridine synthase
YPA_0984	SSF55174	Alpha-L RNA-binding motif
YPA_0985	SSF103473	MFS general substrate transporter
YPA_0988	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPA_0989	SSF161098	MetI-like
YPA_0990	SSF161098	MetI-like
YPA_0991	SSF53850	Periplasmic binding protein-like II
YPA_0992	SSF141868	EAL domain-like
YPA_0993	SSF54001	Cysteine proteinases
YPA_0994	SSF48317	Acid phosphatase/Vanadium-dependent haloperoxidase
YPA_0995	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPA_0997	SSF46785	"Winged helix" DNA-binding domain
YPA_0997	SSF48008	GntR ligand-binding domain-like
YPA_0998	SSF48179	6-phosphogluconate dehydrogenase C-terminal domain-like
YPA_0998	SSF51735	NAD(P)-binding Rossmann-fold domains
YPA_0999	SSF51658	Xylose isomerase-like
YPA_1000	SSF50104	Translation proteins SH3-like domain
YPA_1000	SSF50249	Nucleic acid-binding proteins
YPA_1003	SSF51735	NAD(P)-binding Rossmann-fold domains
YPA_1004	SSF51735	NAD(P)-binding Rossmann-fold domains
YPA_1004	SSF52283	Formate/glycerate dehydrogenase catalytic domain-like
YPA_1005	SSF56529	FAH
YPA_1006	SSF53098	Ribonuclease H-like
YPA_1007	SSF46689	Homeodomain-like
YPA_1007	SSF48295	TrpR-like
YPA_1008	SSF53720	ALDH-like
YPA_1009	SSF53067	Actin-like ATPase domain
YPA_1010	SSF100950	NagB/RpiA/CoA transferase-like
YPA_1010	SSF75445	D-ribose-5-phosphate isomerase (RpiA), lid domain
YPA_1011	SSF53822	Periplasmic binding protein-like I
YPA_1012	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPA_1014	SSF55811	Nudix
YPA_1015	SSF55594	HPr-like
YPA_1015	SSF55804	Phoshotransferase/anion transport protein
YPA_1016	SSF53613	Ribokinase-like
YPA_1017	SSF52794	PTS system IIB component-like
YPA_1018	SSF46894	C-terminal effector domain of the bipartite response regulators
YPA_1021	SSF49354	PapD-like
YPA_1021	SSF49584	Periplasmic chaperone C-domain
YPA_1022	SSF141729	FimD N-terminal domain-like
YPA_1023	SSF51658	Xylose isomerase-like
YPA_1025	SSF46785	"Winged helix" DNA-binding domain
YPA_1025	SSF53850	Periplasmic binding protein-like II
YPA_1027	SSF53807	"Helical backbone" metal receptor
YPA_1028	SSF81345	ABC transporter involved in vitamin B12 uptake, BtuC
YPA_1029	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPA_1030	SSF56935	Porins
YPA_1031	SSF47616	GST C-terminal domain-like
YPA_1031	SSF52833	Thioredoxin-like
YPA_1032	SSF56784	HAD-like
YPA_1033	SSF51197	Clavaminate synthase-like
YPA_1034	SSF53850	Periplasmic binding protein-like II
YPA_1035	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPA_1035	SSF55021	ACT-like
YPA_1036	SSF161098	MetI-like
YPA_1037	SSF56601	beta-lactamase/transpeptidase-like
YPA_1038	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPA_1039	SSF46689	Homeodomain-like
YPA_1039	SSF53098	Ribonuclease H-like
YPA_1040	SSF51569	Aldolase
YPA_1041	SSF53254	Phosphoglycerate mutase-like
YPA_1043	SSF74650	Galactose mutarotase-like
YPA_1045	SSF54211	Ribosomal protein S5 domain 2-like
YPA_1045	SSF55060	GHMP Kinase, C-terminal domain
YPA_1046	SSF54197	HIT-like
YPA_1047	SSF51735	NAD(P)-binding Rossmann-fold domains
YPA_1049	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPA_1050	SSF46785	"Winged helix" DNA-binding domain
YPA_1050	SSF50331	MOP-like
YPA_1052	SSF53850	Periplasmic binding protein-like II
YPA_1053	SSF161098	MetI-like
YPA_1054	SSF50331	MOP-like
YPA_1054	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPA_1055	SSF56784	HAD-like
YPA_1056	SSF50974	Nitrous oxide reductase, N-terminal domain
YPA_1057	SSF53383	PLP-dependent transferases
YPA_1058	SSF102114	Radical SAM enzymes
YPA_1059	SSF53383	PLP-dependent transferases
YPA_1060	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
YPA_1061	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPA_1062	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPA_1063	SSF46600	C-terminal UvrC-binding domain of UvrB
YPA_1063	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPA_1065	SSF142338	CofD-like
YPA_1066	SSF102114	Radical SAM enzymes
YPA_1067	SSF55040	Molybdenum cofactor biosynthesis protein C, MoaC
YPA_1068	SSF54285	MoaD/ThiS
YPA_1069	SSF54690	Molybdopterin synthase subunit MoaE
YPA_1072	SSF143422	Transposase IS200-like
YPA_1073	SSF51905	FAD/NAD(P)-binding domain
YPA_1073	SSF54373	FAD-linked reductases, C-terminal domain
YPA_1074	SSF53720	ALDH-like
YPA_1075	SSF46689	Homeodomain-like
YPA_1075	SSF48498	Tetracyclin repressor-like, C-terminal domain
YPA_1077	SSF46785	"Winged helix" DNA-binding domain
YPA_1077	SSF53850	Periplasmic binding protein-like II
YPA_1078	SSF103481	Multidrug resistance efflux transporter EmrE
YPA_1079	SSF53167	Purine and uridine phosphorylases
YPA_1080	SSF103473	MFS general substrate transporter
YPA_1081	SSF143422	Transposase IS200-like
YPA_1082	SSF103473	MFS general substrate transporter
YPA_1084	SSF103190	Sensory domain-like
YPA_1084	SSF47384	Homodimeric domain of signal transducing histidine kinase
YPA_1084	SSF55785	PYP-like sensor domain (PAS domain)
YPA_1084	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
YPA_1085	SSF46689	Homeodomain-like
YPA_1085	SSF52172	CheY-like
YPA_1085	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPA_1086	SSF51395	FMN-linked oxidoreductases
YPA_1087	SSF46785	"Winged helix" DNA-binding domain
YPA_1087	SSF53850	Periplasmic binding protein-like II
YPA_1089	SSF54909	Dimeric alpha+beta barrel
YPA_1092	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPA_1093	SSF111369	HlyD-like secretion proteins
YPA_1094	SSF46689	Homeodomain-like
YPA_1094	SSF48498	Tetracyclin repressor-like, C-terminal domain
YPA_1095	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPA_1102	SSF47413	lambda repressor-like DNA-binding domains
YPA_1102	SSF53822	Periplasmic binding protein-like I
YPA_1103	SSF46689	Homeodomain-like
YPA_1103	SSF53098	Ribonuclease H-like
YPA_1104	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPA_1106	SSF55486	Metalloproteases ("zincins"), catalytic domain
YPA_1107	SSF54909	Dimeric alpha+beta barrel
YPA_1108	SSF56112	Protein kinase-like (PK-like)
YPA_1109	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPA_1109	SSF90123	ABC transporter transmembrane region
YPA_1111	SSF46689	Homeodomain-like
YPA_1118	SSF56925	OMPA-like
YPA_1120	SSF50249	Nucleic acid-binding proteins
YPA_1121	SSF64438	CNF1/YfiH-like putative cysteine hydrolases
YPA_1122	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
YPA_1124	SSF55073	Nucleotide cyclase
YPA_1124	SSF55785	PYP-like sensor domain (PAS domain)
YPA_1125	SSF56935	Porins
YPA_1130	SSF52728	PTS IIb component
YPA_1130	SSF53062	PTS system fructose IIA component-like
YPA_1131	SSF54631	CBS-domain pair
YPA_1131	SSF56176	FAD-binding/transporter-associated domain-like
YPA_1132	SSF46785	"Winged helix" DNA-binding domain
YPA_1133	SSF56529	FAH
YPA_1134	SSF56529	FAH
YPA_1135	SSF53720	ALDH-like
YPA_1136	SSF53213	LigB-like
YPA_1137	SSF55331	Tautomerase/MIF
YPA_1138	SSF56529	FAH
YPA_1139	SSF51621	Phosphoenolpyruvate/pyruvate domain
YPA_1140	SSF103473	MFS general substrate transporter
YPA_1141	SSF47203	Acyl-CoA dehydrogenase C-terminal domain-like
YPA_1141	SSF56645	Acyl-CoA dehydrogenase NM domain-like
YPA_1142	SSF50475	FMN-binding split barrel
YPA_1143	SSF143548	Serine metabolism enzymes domain
YPA_1144	SSF55811	Nudix
YPA_1145	SSF56322	ADC synthase
YPA_1147	SSF51246	Rudiment single hybrid motif
YPA_1147	SSF52440	PreATP-grasp domain
YPA_1147	SSF56059	Glutathione synthetase ATP-binding domain-like
YPA_1148	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPA_1150	SSF88697	PUA domain-like
YPA_1152	SSF50993	Peptidase/esterase 'gauge' domain
YPA_1152	SSF53474	alpha/beta-Hydrolases
YPA_1154	SSF46689	Homeodomain-like
YPA_1154	SSF53098	Ribonuclease H-like
YPA_1155	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPA_1156	SSF53474	alpha/beta-Hydrolases
YPA_1157	SSF46575	DNA polymerase III theta subunit-like
YPA_1158	SSF47240	Ferritin-like
YPA_1159	SSF81296	E set domains
YPA_1164	SSF160544	EscU C-terminal domain-like
YPA_1169	SSF143422	Transposase IS200-like
YPA_1170	SSF49373	Invasin/intimin cell-adhesion fragments
YPA_1170	SSF56436	C-type lectin-like
YPA_1171	SSF140566	FlgN-like
YPA_1172	SSF101498	Anti-sigma factor FlgM
YPA_1177	SSF117143	Flagellar hook protein flgE
YPA_1178	SSF117143	Flagellar hook protein flgE
YPA_1179	SSF117143	Flagellar hook protein flgE
YPA_1183	SSF64518	Phase 1 flagellin
YPA_1184	SSF64518	Phase 1 flagellin
YPA_1185	SSF100950	NagB/RpiA/CoA transferase-like
YPA_1185	SSF88659	Sigma3 and sigma4 domains of RNA polymerase sigma factors
YPA_1186	SSF51735	NAD(P)-binding Rossmann-fold domains
YPA_1186	SSF53639	AraD/HMP-PK domain-like
YPA_1188	SSF53822	Periplasmic binding protein-like I
YPA_1189	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPA_1191	SSF53613	Ribokinase-like
YPA_1192	SSF143100	TTHA1013/TTHA0281-like
YPA_1193	SSF54786	YcfA/nrd intein domain
YPA_1198	SSF101801	Surface presentation of antigens (SPOA)
YPA_1199	SSF101801	Surface presentation of antigens (SPOA)
YPA_1199	SSF103039	CheC-like
YPA_1203	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPA_1205	SSF48029	FliG
YPA_1210	SSF48150	DNA-glycosylase
YPA_1211	SSF109604	HD-domain/PDEase-like
YPA_1212	SSF55781	GAF domain-like
YPA_1214	SSF46689	Homeodomain-like
YPA_1214	SSF51215	Regulatory protein AraC
YPA_1216	SSF101116	Flagellar export chaperone FliS
YPA_1218	SSF64518	Phase 1 flagellin
YPA_1219	SSF88659	Sigma3 and sigma4 domains of RNA polymerase sigma factors
YPA_1219	SSF88946	Sigma2 domain of RNA polymerase sigma factors
YPA_1221	SSF53686	Tryptophan synthase beta subunit-like PLP-dependent enzymes
YPA_1222	SSF53850	Periplasmic binding protein-like II
YPA_1223	SSF161098	MetI-like
YPA_1224	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPA_1225	SSF46785	"Winged helix" DNA-binding domain
YPA_1227	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPA_1228	SSF46689	Homeodomain-like
YPA_1228	SSF53098	Ribonuclease H-like
YPA_1229	SSF47598	Ribbon-helix-helix
YPA_1229	SSF51730	FAD-linked oxidoreductase
YPA_1229	SSF53720	ALDH-like
YPA_1229	SSF81935	N-terminal domain of bifunctional PutA protein
YPA_1233	SSF49503	Cupredoxins
YPA_1234	SSF54909	Dimeric alpha+beta barrel
YPA_1235	SSF54909	Dimeric alpha+beta barrel
YPA_1236	SSF52218	Flavoproteins
YPA_1237	SSF117281	Kelch motif
YPA_1239	SSF56925	OMPA-like
YPA_1243	SSF46894	C-terminal effector domain of the bipartite response regulators
YPA_1243	SSF52172	CheY-like
YPA_1244	SSF46600	C-terminal UvrC-binding domain of UvrB
YPA_1244	SSF47781	RuvA domain 2-like
YPA_1244	SSF82771	GIY-YIG endonuclease
YPA_1246	SSF56349	DNA breaking-rejoining enzymes
YPA_1249	SSF141452	Hcp1-like
YPA_1250	SSF53098	Ribonuclease H-like
YPA_1255	SSF160719	gpW/gp25-like
YPA_1259	SSF52200	Toll/Interleukin receptor TIR domain
YPA_1266	SSF46785	"Winged helix" DNA-binding domain
YPA_1266	SSF64288	Chorismate lyase-like
YPA_1268	SSF51735	NAD(P)-binding Rossmann-fold domains
YPA_1268	SSF55347	Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
YPA_1269	SSF53850	Periplasmic binding protein-like II
YPA_1270	SSF161098	MetI-like
YPA_1271	SSF161098	MetI-like
YPA_1272	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPA_1273	SSF50331	MOP-like
YPA_1275	SSF46689	Homeodomain-like
YPA_1275	SSF53098	Ribonuclease H-like
YPA_1276	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPA_1277	SSF68989	Hemolysin expression modulating protein HHA
YPA_1278	SSF57716	Glucocorticoid receptor-like (DNA-binding domain)
YPA_1284	SSF56935	Porins
YPA_1285	SSF56801	Acetyl-CoA synthetase-like
YPA_1286	SSF53474	alpha/beta-Hydrolases
YPA_1287	SSF51735	NAD(P)-binding Rossmann-fold domains
YPA_1288	SSF47336	ACP-like
YPA_1288	SSF51735	NAD(P)-binding Rossmann-fold domains
YPA_1288	SSF52151	FabD/lysophospholipase-like
YPA_1288	SSF52777	CoA-dependent acyltransferases
YPA_1288	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
YPA_1288	SSF53474	alpha/beta-Hydrolases
YPA_1288	SSF53901	Thiolase-like
YPA_1288	SSF55048	Probable ACP-binding domain of malonyl-CoA ACP transacylase
YPA_1289	SSF47336	ACP-like
YPA_1289	SSF52777	CoA-dependent acyltransferases
YPA_1289	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
YPA_1289	SSF56801	Acetyl-CoA synthetase-like
YPA_1290	SSF46689	Homeodomain-like
YPA_1291	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPA_1291	SSF90123	ABC transporter transmembrane region
YPA_1292	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPA_1292	SSF90123	ABC transporter transmembrane region
YPA_1293	SSF103473	MFS general substrate transporter
YPA_1294	SSF56322	ADC synthase
YPA_1295	SSF56349	DNA breaking-rejoining enzymes
YPA_1296	SSF49354	PapD-like
YPA_1296	SSF49584	Periplasmic chaperone C-domain
YPA_1297	SSF49401	Bacterial adhesins
YPA_1298	SSF141729	FimD N-terminal domain-like
YPA_1299	SSF49354	PapD-like
YPA_1299	SSF49584	Periplasmic chaperone C-domain
YPA_1300	SSF49401	Bacterial adhesins
YPA_1302	SSF47384	Homodimeric domain of signal transducing histidine kinase
YPA_1302	SSF52172	CheY-like
YPA_1302	SSF53850	Periplasmic binding protein-like II
YPA_1302	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
YPA_1303	SSF46894	C-terminal effector domain of the bipartite response regulators
YPA_1303	SSF52172	CheY-like
YPA_1304	SSF100950	NagB/RpiA/CoA transferase-like
YPA_1305	SSF54637	Thioesterase/thiol ester dehydrase-isomerase
YPA_1306	SSF51621	Phosphoenolpyruvate/pyruvate domain
YPA_1307	SSF46785	"Winged helix" DNA-binding domain
YPA_1307	SSF53850	Periplasmic binding protein-like II
YPA_1308	SSF49478	Cna protein B-type domain
YPA_1310	SSF103473	MFS general substrate transporter
YPA_1311	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPA_1313	SSF46689	Homeodomain-like
YPA_1313	SSF53098	Ribonuclease H-like
YPA_1314	SSF103473	MFS general substrate transporter
YPA_1315	SSF51556	Metallo-dependent hydrolases
YPA_1316	SSF46785	"Winged helix" DNA-binding domain
YPA_1316	SSF53850	Periplasmic binding protein-like II
YPA_1318	SSF53383	PLP-dependent transferases
YPA_1320	SSF100950	NagB/RpiA/CoA transferase-like
YPA_1320	SSF46785	"Winged helix" DNA-binding domain
YPA_1322	SSF56601	beta-lactamase/transpeptidase-like
YPA_1323	SSF103473	MFS general substrate transporter
YPA_1329	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPA_1330	SSF52833	Thioredoxin-like
YPA_1331	SSF46626	Cytochrome c
YPA_1332	SSF51197	Clavaminate synthase-like
YPA_1332	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
YPA_1333	SSF53092	Creatinase/prolidase N-terminal domain
YPA_1333	SSF55920	Creatinase/aminopeptidase
YPA_1334	SSF48452	TPR-like
YPA_1335	SSF88713	Glycoside hydrolase/deacetylase
YPA_1336	SSF53448	Nucleotide-diphospho-sugar transferases
YPA_1338	SSF55729	Acyl-CoA N-acyltransferases (Nat)
YPA_1340	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPA_1342	SSF158472	HAMP domain-like
YPA_1342	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
YPA_1343	SSF46785	"Winged helix" DNA-binding domain
YPA_1343	SSF53383	PLP-dependent transferases
YPA_1344	SSF53383	PLP-dependent transferases
YPA_1345	SSF55729	Acyl-CoA N-acyltransferases (Nat)
YPA_1346	SSF53720	ALDH-like
YPA_1347	SSF55909	Pentein
YPA_1348	SSF53187	Zn-dependent exopeptidases
YPA_1349	SSF56935	Porins
YPA_1350	SSF46689	Homeodomain-like
YPA_1350	SSF53098	Ribonuclease H-like
YPA_1351	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPA_1352	SSF56935	Porins
YPA_1353	SSF53187	Zn-dependent exopeptidases
YPA_1354	SSF51338	Composite domain of metallo-dependent hydrolases
YPA_1354	SSF51556	Metallo-dependent hydrolases
YPA_1355	SSF46785	"Winged helix" DNA-binding domain
YPA_1355	SSF64288	Chorismate lyase-like
YPA_1356	SSF51338	Composite domain of metallo-dependent hydrolases
YPA_1356	SSF51556	Metallo-dependent hydrolases
YPA_1357	SSF51182	RmlC-like cupins
YPA_1358	SSF56322	ADC synthase
YPA_1359	SSF53901	Thiolase-like
YPA_1360	SSF53901	Thiolase-like
YPA_1361	SSF51735	NAD(P)-binding Rossmann-fold domains
YPA_1362	SSF56281	Metallo-hydrolase/oxidoreductase
YPA_1364	SSF51735	NAD(P)-binding Rossmann-fold domains
YPA_1365	SSF53448	Nucleotide-diphospho-sugar transferases
YPA_1367	SSF53756	UDP-Glycosyltransferase/glycogen phosphorylase
YPA_1371	SSF81901	HCP-like
YPA_1371	SSF82185	Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain
YPA_1372	SSF81901	HCP-like
YPA_1373	SSF89623	Ribose/Galactose isomerase RpiB/AlsB
YPA_1374	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
YPA_1375	SSF51735	NAD(P)-binding Rossmann-fold domains
YPA_1376	SSF51182	RmlC-like cupins
YPA_1377	SSF51182	RmlC-like cupins
YPA_1378	SSF48371	ARM repeat
YPA_1379	SSF53474	alpha/beta-Hydrolases
YPA_1380	SSF51182	RmlC-like cupins
YPA_1381	SSF69118	AhpD-like
YPA_1382	SSF158472	HAMP domain-like
YPA_1382	SSF47384	Homodimeric domain of signal transducing histidine kinase
YPA_1382	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
YPA_1383	SSF46894	C-terminal effector domain of the bipartite response regulators
YPA_1383	SSF52172	CheY-like
YPA_1384	SSF53474	alpha/beta-Hydrolases
YPA_1385	SSF52218	Flavoproteins
YPA_1386	SSF81342	Transmembrane di-heme cytochromes
YPA_1388	SSF53822	Periplasmic binding protein-like I
YPA_1389	SSF53474	alpha/beta-Hydrolases
YPA_1390	SSF52821	Rhodanese/Cell cycle control phosphatase
YPA_1391	SSF53098	Ribonuclease H-like
YPA_1392	SSF46689	Homeodomain-like
YPA_1393	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPA_1393	SSF81271	TGS-like
YPA_1394	SSF53178	Peptidyl-tRNA hydrolase-like
YPA_1396	SSF53271	PRTase-like
YPA_1398	SSF54211	Ribosomal protein S5 domain 2-like
YPA_1398	SSF55060	GHMP Kinase, C-terminal domain
YPA_1399	SSF89392	Prokaryotic lipoproteins and lipoprotein localization factors
YPA_1400	SSF51735	NAD(P)-binding Rossmann-fold domains
YPA_1400	SSF69075	Glutamyl tRNA-reductase dimerization domain
YPA_1400	SSF69742	Glutamyl tRNA-reductase catalytic, N-terminal domain
YPA_1401	SSF75620	Release factor
YPA_1402	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
YPA_1404	SSF48452	TPR-like
YPA_1405	SSF51569	Aldolase
YPA_1406	SSF52091	SpoIIaa-like
YPA_1407	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPA_1408	SSF46689	Homeodomain-like
YPA_1408	SSF53098	Ribonuclease H-like
YPA_1410	SSF51695	PLC-like phosphodiesterases
YPA_1411	SSF53850	Periplasmic binding protein-like II
YPA_1412	SSF161098	MetI-like
YPA_1413	SSF161098	MetI-like
YPA_1414	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPA_1415	SSF143422	Transposase IS200-like
YPA_1416	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPA_1417	SSF51695	PLC-like phosphodiesterases
YPA_1418	SSF46785	"Winged helix" DNA-binding domain
YPA_1418	SSF53067	Actin-like ATPase domain
YPA_1419	SSF89550	PHP domain-like
YPA_1420	SSF89155	TorD-like
YPA_1422	SSF103473	MFS general substrate transporter
YPA_1423	SSF55729	Acyl-CoA N-acyltransferases (Nat)
YPA_1424	SSF46785	"Winged helix" DNA-binding domain
YPA_1424	SSF51735	NAD(P)-binding Rossmann-fold domains
YPA_1424	SSF55347	Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
YPA_1427	SSF51126	Pectin lyase-like
YPA_1428	SSF47323	Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
YPA_1428	SSF52374	Nucleotidylyl transferase
YPA_1428	SSF55190	Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain
YPA_1429	SSF54593	Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
YPA_1430	SSF110395	CutC-like
YPA_1431	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
YPA_1432	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
YPA_1433	SSF161084	MAPEG domain-like
YPA_1434	SSF117396	TM1631-like
YPA_1435	SSF50249	Nucleic acid-binding proteins
YPA_1435	SSF55261	GAD domain-like
YPA_1435	SSF55681	Class II aaRS and biotin synthetases
YPA_1436	SSF55811	Nudix
YPA_1437	SSF75625	YebC-like
YPA_1438	SSF53098	Ribonuclease H-like
YPA_1439	SSF143422	Transposase IS200-like
YPA_1440	SSF46929	DNA helicase RuvA subunit, C-terminal domain
YPA_1440	SSF47781	RuvA domain 2-like
YPA_1440	SSF50249	Nucleic acid-binding proteins
YPA_1441	SSF46785	"Winged helix" DNA-binding domain
YPA_1441	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPA_1442	SSF81345	ABC transporter involved in vitamin B12 uptake, BtuC
YPA_1443	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPA_1444	SSF53807	"Helical backbone" metal receptor
YPA_1445	SSF51261	Duplicated hybrid motif
YPA_1447	SSF50800	PK beta-barrel domain-like
YPA_1447	SSF51621	Phosphoenolpyruvate/pyruvate domain
YPA_1447	SSF52935	PK C-terminal domain-like
YPA_1448	SSF46689	Homeodomain-like
YPA_1448	SSF53697	SIS domain
YPA_1449	SSF51735	NAD(P)-binding Rossmann-fold domains
YPA_1449	SSF55347	Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
YPA_1450	SSF51569	Aldolase
YPA_1451	SSF103481	Multidrug resistance efflux transporter EmrE
YPA_1452	SSF103481	Multidrug resistance efflux transporter EmrE
YPA_1453	SSF55298	YjgF-like
YPA_1454	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPA_1455	SSF53067	Actin-like ATPase domain
YPA_1457	SSF56801	Acetyl-CoA synthetase-like
YPA_1458	SSF47819	HRDC-like
YPA_1458	SSF53098	Ribonuclease H-like
YPA_1459	SSF55229	Cell division protein MinE topological specificity domain
YPA_1460	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPA_1461	SSF63848	Cell-division inhibitor MinC, C-terminal domain
YPA_1462	SSF160191	YcgL-like
YPA_1463	SSF53955	Lysozyme-like
YPA_1464	SSF56529	FAH
YPA_1466	SSF56349	DNA breaking-rejoining enzymes
YPA_1467	SSF46689	Homeodomain-like
YPA_1467	SSF53098	Ribonuclease H-like
YPA_1468	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPA_1472	SSF49373	Invasin/intimin cell-adhesion fragments
YPA_1478	SSF49373	Invasin/intimin cell-adhesion fragments
YPA_1482	SSF143422	Transposase IS200-like
YPA_1484	SSF102712	JAB1/MPN domain
YPA_1484	SSF54001	Cysteine proteinases
YPA_1486	SSF47598	Ribbon-helix-helix
YPA_1490	SSF49265	Fibronectin type III
YPA_1496	SSF103473	MFS general substrate transporter
YPA_1497	SSF103473	MFS general substrate transporter
YPA_1498	SSF53383	PLP-dependent transferases
YPA_1501	SSF158442	DsbB-like
YPA_1503	SSF46785	"Winged helix" DNA-binding domain
YPA_1503	SSF48008	GntR ligand-binding domain-like
YPA_1505	SSF51905	FAD/NAD(P)-binding domain
YPA_1505	SSF54373	FAD-linked reductases, C-terminal domain
YPA_1506	SSF103473	MFS general substrate transporter
YPA_1507	SSF51182	RmlC-like cupins
YPA_1508	SSF46785	"Winged helix" DNA-binding domain
YPA_1508	SSF53850	Periplasmic binding protein-like II
YPA_1509	SSF103481	Multidrug resistance efflux transporter EmrE
YPA_1511	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPA_1513	SSF74650	Galactose mutarotase-like
YPA_1514	SSF51735	NAD(P)-binding Rossmann-fold domains
YPA_1514	SSF55347	Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
YPA_1515	SSF51316	Mss4-like
YPA_1517	SSF52499	Isochorismatase-like hydrolases
YPA_1518	SSF53774	Glutaminase/Asparaginase
YPA_1519	SSF52096	ClpP/crotonase
YPA_1520	SSF55469	FMN-dependent nitroreductase-like
YPA_1521	SSF55326	PurM N-terminal domain-like
YPA_1521	SSF56042	PurM C-terminal domain-like
YPA_1522	SSF56712	Prokaryotic type I DNA topoisomerase
YPA_1524	SSF55811	Nudix
YPA_1525	SSF56219	DNase I-like
YPA_1526	SSF46785	"Winged helix" DNA-binding domain
YPA_1529	SSF53328	Formyltransferase
YPA_1529	SSF55021	ACT-like
YPA_1530	SSF103642	Sec-C motif
YPA_1530	SSF54427	NTF2-like
YPA_1531	SSF52172	CheY-like
YPA_1532	SSF48179	6-phosphogluconate dehydrogenase C-terminal domain-like
YPA_1532	SSF51735	NAD(P)-binding Rossmann-fold domains
YPA_1532	SSF52413	UDP-glucose/GDP-mannose dehydrogenase C-terminal domain
YPA_1533	SSF81273	H-NS histone-like proteins
YPA_1534	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPA_1534	SSF57716	Glucocorticoid receptor-like (DNA-binding domain)
YPA_1535	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPA_1536	SSF46689	Homeodomain-like
YPA_1536	SSF53098	Ribonuclease H-like
YPA_1537	SSF53720	ALDH-like
YPA_1537	SSF56796	Dehydroquinate synthase-like
YPA_1539	SSF53850	Periplasmic binding protein-like II
YPA_1540	SSF161098	MetI-like
YPA_1541	SSF161098	MetI-like
YPA_1542	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPA_1543	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPA_1545	SSF102816	Putative dsDNA mimic
YPA_1546	SSF56024	Phospholipase D/nuclease
YPA_1547	SSF56925	OMPA-like
YPA_1551	SSF54909	Dimeric alpha+beta barrel
YPA_1552	SSF74653	TolA/TonB C-terminal domain
YPA_1554	SSF54637	Thioesterase/thiol ester dehydrase-isomerase
YPA_1557	SSF52091	SpoIIaa-like
YPA_1560	SSF56925	OMPA-like
YPA_1563	SSF51366	Ribulose-phoshate binding barrel
YPA_1564	SSF53686	Tryptophan synthase beta subunit-like PLP-dependent enzymes
YPA_1565	SSF51366	Ribulose-phoshate binding barrel
YPA_1566	SSF47648	Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain
YPA_1566	SSF52418	Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain
YPA_1567	SSF52317	Class I glutamine amidotransferase-like
YPA_1568	SSF56322	ADC synthase
YPA_1569	SSF89550	PHP domain-like
YPA_1570	SSF55821	YrdC/RibB
YPA_1571	SSF55120	Pseudouridine synthase
YPA_1571	SSF55174	Alpha-L RNA-binding motif
YPA_1572	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPA_1573	SSF51735	NAD(P)-binding Rossmann-fold domains
YPA_1574	SSF52096	ClpP/crotonase
YPA_1577	SSF56712	Prokaryotic type I DNA topoisomerase
YPA_1577	SSF57783	Zinc beta-ribbon
YPA_1578	SSF46785	"Winged helix" DNA-binding domain
YPA_1578	SSF53850	Periplasmic binding protein-like II
YPA_1580	SSF52016	LeuD/IlvD-like
YPA_1580	SSF53732	Aconitase iron-sulfur domain
YPA_1581	SSF142695	RibA-like
YPA_1583	SSF48317	Acid phosphatase/Vanadium-dependent haloperoxidase
YPA_1585	SSF48452	TPR-like
YPA_1586	SSF47598	Ribbon-helix-helix
YPA_1587	SSF51366	Ribulose-phoshate binding barrel
YPA_1588	SSF55159	eIF1-like
YPA_1590	SSF53639	AraD/HMP-PK domain-like
YPA_1592	SSF51569	Aldolase
YPA_1595	SSF50249	Nucleic acid-binding proteins
YPA_1596	SSF103473	MFS general substrate transporter
YPA_1597	SSF51735	NAD(P)-binding Rossmann-fold domains
YPA_1598	SSF48150	DNA-glycosylase
YPA_1602	SSF46689	Homeodomain-like
YPA_1602	SSF55136	Probable bacterial effector-binding domain
YPA_1603	SSF142019	Nqo1 FMN-binding domain-like
YPA_1603	SSF46548	alpha-helical ferredoxin
YPA_1604	SSF54862	4Fe-4S ferredoxins
YPA_1608	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPA_1608	SSF90123	ABC transporter transmembrane region
YPA_1609	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPA_1610	SSF111369	HlyD-like secretion proteins
YPA_1612	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPA_1612	SSF90123	ABC transporter transmembrane region
YPA_1613	SSF50443	FucI/AraA C-terminal domain-like
YPA_1613	SSF53743	FucI/AraA N-terminal and middle domains
YPA_1614	SSF53067	Actin-like ATPase domain
YPA_1615	SSF53822	Periplasmic binding protein-like I
YPA_1616	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPA_1618	SSF46689	Homeodomain-like
YPA_1618	SSF51215	Regulatory protein AraC
YPA_1619	SSF51735	NAD(P)-binding Rossmann-fold domains
YPA_1623	SSF51182	RmlC-like cupins
YPA_1624	SSF48557	L-aspartase-like
YPA_1625	SSF56596	Replication terminator protein (Tus)
YPA_1626	SSF103473	MFS general substrate transporter
YPA_1627	SSF46785	"Winged helix" DNA-binding domain
YPA_1627	SSF53850	Periplasmic binding protein-like II
YPA_1628	SSF46785	"Winged helix" DNA-binding domain
YPA_1628	SSF53067	Actin-like ATPase domain
YPA_1629	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPA_1630	SSF53822	Periplasmic binding protein-like I
YPA_1631	SSF53850	Periplasmic binding protein-like II
YPA_1632	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPA_1633	SSF46689	Homeodomain-like
YPA_1633	SSF53098	Ribonuclease H-like
YPA_1635	SSF161098	MetI-like
YPA_1636	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPA_1637	SSF53167	Purine and uridine phosphorylases
YPA_1641	SSF54001	Cysteine proteinases
YPA_1642	SSF52467	DHS-like NAD/FAD-binding domain
YPA_1642	SSF52518	Thiamin diphosphate-binding fold (THDP-binding)
YPA_1643	SSF55021	ACT-like
YPA_1644	SSF56784	HAD-like
YPA_1645	SSF158682	TerB-like
YPA_1647	SSF53649	Alkaline phosphatase-like
YPA_1648	SSF46767	Methylated DNA-protein cysteine methyltransferase, C-terminal domain
YPA_1648	SSF53155	Methylated DNA-protein cysteine methyltransferase domain
YPA_1649	SSF46785	"Winged helix" DNA-binding domain
YPA_1649	SSF51206	cAMP-binding domain-like
YPA_1650	SSF52402	Adenine nucleotide alpha hydrolases-like
YPA_1651	SSF52467	DHS-like NAD/FAD-binding domain
YPA_1652	SSF51735	NAD(P)-binding Rossmann-fold domains
YPA_1652	SSF52283	Formate/glycerate dehydrogenase catalytic domain-like
YPA_1653	SSF159871	YdgH-like
YPA_1656	SSF46894	C-terminal effector domain of the bipartite response regulators
YPA_1656	SSF52172	CheY-like
YPA_1657	SSF47384	Homodimeric domain of signal transducing histidine kinase
YPA_1657	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
YPA_1658	SSF55486	Metalloproteases ("zincins"), catalytic domain
YPA_1659	SSF143422	Transposase IS200-like
YPA_1660	SSF81298	Adenylylcyclase toxin (the edema factor)
YPA_1661	SSF81298	Adenylylcyclase toxin (the edema factor)
YPA_1663	SSF101874	YceI-like
YPA_1664	SSF81342	Transmembrane di-heme cytochromes
YPA_1666	SSF50494	Trypsin-like serine proteases
YPA_1667	SSF47413	lambda repressor-like DNA-binding domains
YPA_1669	SSF46689	Homeodomain-like
YPA_1669	SSF53098	Ribonuclease H-like
YPA_1670	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPA_1671	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPA_1672	SSF52218	Flavoproteins
YPA_1673	SSF100950	NagB/RpiA/CoA transferase-like
YPA_1674	SSF48179	6-phosphogluconate dehydrogenase C-terminal domain-like
YPA_1674	SSF51735	NAD(P)-binding Rossmann-fold domains
YPA_1678	SSF51735	NAD(P)-binding Rossmann-fold domains
YPA_1678	SSF52283	Formate/glycerate dehydrogenase catalytic domain-like
YPA_1682	SSF103481	Multidrug resistance efflux transporter EmrE
YPA_1683	SSF52518	Thiamin diphosphate-binding fold (THDP-binding)
YPA_1683	SSF52922	TK C-terminal domain-like
YPA_1683	SSF53323	Pyruvate-ferredoxin oxidoreductase, PFOR, domain III
YPA_1683	SSF54862	4Fe-4S ferredoxins
YPA_1684	SSF52402	Adenine nucleotide alpha hydrolases-like
YPA_1685	SSF53474	alpha/beta-Hydrolases
YPA_1686	SSF46955	Putative DNA-binding domain
YPA_1687	SSF143865	CorA soluble domain-like
YPA_1687	SSF144083	Magnesium transport protein CorA, transmembrane region
YPA_1688	SSF53850	Periplasmic binding protein-like II
YPA_1689	SSF53187	Zn-dependent exopeptidases
YPA_1690	SSF51604	Enolase C-terminal domain-like
YPA_1690	SSF54826	Enolase N-terminal domain-like
YPA_1691	SSF52833	Thioredoxin-like
YPA_1692	SSF143422	Transposase IS200-like
YPA_1693	SSF46689	Homeodomain-like
YPA_1693	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPA_1693	SSF55785	PYP-like sensor domain (PAS domain)
YPA_1702	SSF46689	Homeodomain-like
YPA_1702	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPA_1703	SSF143422	Transposase IS200-like
YPA_1704	SSF53850	Periplasmic binding protein-like II
YPA_1705	SSF161098	MetI-like
YPA_1706	SSF161098	MetI-like
YPA_1707	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPA_1708	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPA_1709	SSF69118	AhpD-like
YPA_1710	SSF103473	MFS general substrate transporter
YPA_1713	SSF47616	GST C-terminal domain-like
YPA_1714	SSF53613	Ribokinase-like
YPA_1715	SSF52374	Nucleotidylyl transferase
YPA_1715	SSF55174	Alpha-L RNA-binding motif
YPA_1716	SSF50475	FMN-binding split barrel
YPA_1717	SSF141488	YdhA-like
YPA_1718	SSF53067	Actin-like ATPase domain
YPA_1720	SSF46785	"Winged helix" DNA-binding domain
YPA_1721	SSF51430	NAD(P)-linked oxidoreductase
YPA_1723	SSF53649	Alkaline phosphatase-like
YPA_1724	SSF46689	Homeodomain-like
YPA_1724	SSF48498	Tetracyclin repressor-like, C-terminal domain
YPA_1725	SSF51395	FMN-linked oxidoreductases
YPA_1727	SSF54593	Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
YPA_1728	SSF53098	Ribonuclease H-like
YPA_1729	SSF52833	Thioredoxin-like
YPA_1730	SSF54001	Cysteine proteinases
YPA_1731	SSF46609	Fe,Mn superoxide dismutase (SOD), N-terminal domain
YPA_1731	SSF54719	Fe,Mn superoxide dismutase (SOD), C-terminal domain
YPA_1732	SSF47413	lambda repressor-like DNA-binding domains
YPA_1732	SSF53822	Periplasmic binding protein-like I
YPA_1733	SSF46785	"Winged helix" DNA-binding domain
YPA_1733	SSF53850	Periplasmic binding protein-like II
YPA_1734	SSF103473	MFS general substrate transporter
YPA_1735	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
YPA_1736	SSF63380	Riboflavin synthase domain-like
YPA_1738	SSF50800	PK beta-barrel domain-like
YPA_1738	SSF51621	Phosphoenolpyruvate/pyruvate domain
YPA_1738	SSF52935	PK C-terminal domain-like
YPA_1739	SSF58042	Outer membrane lipoprotein
YPA_1740	SSF143422	Transposase IS200-like
YPA_1741	SSF46689	Homeodomain-like
YPA_1741	SSF53098	Ribonuclease H-like
YPA_1742	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPA_1743	SSF141523	L,D-transpeptidase catalytic domain-like
YPA_1744	SSF82649	SufE/NifU
YPA_1745	SSF53383	PLP-dependent transferases
YPA_1746	SSF101960	Stabilizer of iron transporter SufD
YPA_1747	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPA_1748	SSF101960	Stabilizer of iron transporter SufD
YPA_1749	SSF89360	HesB-like domain
YPA_1750	SSF54637	Thioesterase/thiol ester dehydrase-isomerase
YPA_1751	SSF46548	alpha-helical ferredoxin
YPA_1751	SSF55103	FAD-linked oxidases, C-terminal domain
YPA_1751	SSF56176	FAD-binding/transporter-associated domain-like
YPA_1753	SSF51621	Phosphoenolpyruvate/pyruvate domain
YPA_1753	SSF52009	Phosphohistidine domain
YPA_1753	SSF56059	Glutathione synthetase ATP-binding domain-like
YPA_1754	SSF47454	A DNA-binding domain in eukaryotic transcription factors
YPA_1755	SSF51569	Aldolase
YPA_1758	SSF55681	Class II aaRS and biotin synthetases
YPA_1758	SSF82649	SufE/NifU
YPA_1759	SSF54001	Cysteine proteinases
YPA_1760	SSF103481	Multidrug resistance efflux transporter EmrE
YPA_1761	SSF103481	Multidrug resistance efflux transporter EmrE
YPA_1763	SSF88713	Glycoside hydrolase/deacetylase
YPA_1764	SSF50486	FMT C-terminal domain-like
YPA_1764	SSF51735	NAD(P)-binding Rossmann-fold domains
YPA_1764	SSF53328	Formyltransferase
YPA_1765	SSF53448	Nucleotide-diphospho-sugar transferases
YPA_1766	SSF53383	PLP-dependent transferases
YPA_1767	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPA_1768	SSF52833	Thioredoxin-like
YPA_1769	SSF81345	ABC transporter involved in vitamin B12 uptake, BtuC
YPA_1771	SSF47729	IHF-like DNA-binding proteins
YPA_1772	SSF46955	Putative DNA-binding domain
YPA_1772	SSF50249	Nucleic acid-binding proteins
YPA_1772	SSF54991	Anticodon-binding domain of PheRS
YPA_1772	SSF55681	Class II aaRS and biotin synthetases
YPA_1772	SSF56037	PheT/TilS domain
YPA_1773	SSF46589	tRNA-binding arm
YPA_1773	SSF55681	Class II aaRS and biotin synthetases
YPA_1775	SSF74731	Ribosomal protein L20
YPA_1776	SSF143034	L35p-like
YPA_1777	SSF55200	Translation initiation factor IF3, C-terminal domain
YPA_1778	SSF52954	Class II aaRS ABD-related
YPA_1778	SSF55186	ThrRS/AlaRS common domain
YPA_1778	SSF55681	Class II aaRS and biotin synthetases
YPA_1778	SSF81271	TGS-like
YPA_1782	SSF53955	Lysozyme-like
YPA_1783	SSF53807	"Helical backbone" metal receptor
YPA_1784	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPA_1785	SSF81345	ABC transporter involved in vitamin B12 uptake, BtuC
YPA_1786	SSF81345	ABC transporter involved in vitamin B12 uptake, BtuC
YPA_1788	SSF56112	Protein kinase-like (PK-like)
YPA_1790	SSF56784	HAD-like
YPA_1792	SSF51182	RmlC-like cupins
YPA_1793	SSF51182	RmlC-like cupins
YPA_1794	SSF51735	NAD(P)-binding Rossmann-fold domains
YPA_1796	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPA_1797	SSF46689	Homeodomain-like
YPA_1797	SSF53098	Ribonuclease H-like
YPA_1799	SSF160964	MalF N-terminal region-like
YPA_1799	SSF161098	MetI-like
YPA_1800	SSF161098	MetI-like
YPA_1801	SSF50331	MOP-like
YPA_1801	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPA_1802	SSF53850	Periplasmic binding protein-like II
YPA_1803	SSF56935	Porins
YPA_1805	SSF118215	Proton glutamate symport protein
YPA_1806	SSF47090	PGBD-like
YPA_1806	SSF55846	N-acetylmuramoyl-L-alanine amidase-like
YPA_1807	SSF46785	"Winged helix" DNA-binding domain
YPA_1807	SSF55781	GAF domain-like
YPA_1808	SSF82171	DPP6 N-terminal domain-like
YPA_1809	SSF103473	MFS general substrate transporter
YPA_1810	SSF49354	PapD-like
YPA_1810	SSF49584	Periplasmic chaperone C-domain
YPA_1811	SSF49401	Bacterial adhesins
YPA_1812	SSF141729	FimD N-terminal domain-like
YPA_1813	SSF49354	PapD-like
YPA_1813	SSF49584	Periplasmic chaperone C-domain
YPA_1814	SSF49401	Bacterial adhesins
YPA_1816	SSF50156	PDZ domain-like
YPA_1816	SSF52096	ClpP/crotonase
YPA_1817	SSF48657	FinO-like
YPA_1818	SSF55781	GAF domain-like
YPA_1824	SSF49354	PapD-like
YPA_1828	SSF88697	PUA domain-like
YPA_1830	SSF46689	Homeodomain-like
YPA_1830	SSF53098	Ribonuclease H-like
YPA_1831	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPA_1833	SSF52151	FabD/lysophospholipase-like
YPA_1835	SSF50621	Alanine racemase C-terminal domain-like
YPA_1835	SSF51419	PLP-binding barrel
YPA_1837	SSF101967	Adhesin YadA, collagen-binding domain
YPA_1837	SSF54523	Pili subunits
YPA_1838	SSF101967	Adhesin YadA, collagen-binding domain
YPA_1839	SSF47090	PGBD-like
YPA_1839	SSF55846	N-acetylmuramoyl-L-alanine amidase-like
YPA_1841	SSF75708	Chemotaxis phosphatase CheZ
YPA_1842	SSF52172	CheY-like
YPA_1843	SSF52172	CheY-like
YPA_1843	SSF52738	Methylesterase CheB, C-terminal domain
YPA_1844	SSF47757	Chemotaxis receptor methyltransferase CheR, N-terminal domain
YPA_1844	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
YPA_1845	SSF47170	Aspartate receptor, ligand-binding domain
YPA_1845	SSF58104	Methyl-accepting chemotaxis protein (MCP) signaling domain
YPA_1846	SSF47170	Aspartate receptor, ligand-binding domain
YPA_1846	SSF58104	Methyl-accepting chemotaxis protein (MCP) signaling domain
YPA_1849	SSF103515	Autotransporter
YPA_1849	SSF51126	Pectin lyase-like
YPA_1851	SSF51658	Xylose isomerase-like
YPA_1852	SSF55298	YjgF-like
YPA_1853	SSF103473	MFS general substrate transporter
YPA_1854	SSF50341	CheW-like
YPA_1855	SSF47226	Histidine-containing phosphotransfer domain, HPT domain
YPA_1855	SSF47384	Homodimeric domain of signal transducing histidine kinase
YPA_1855	SSF50341	CheW-like
YPA_1855	SSF55052	CheY-binding domain of CheA
YPA_1855	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
YPA_1856	SSF103088	OmpA-like
YPA_1858	SSF160930	FlhC-like
YPA_1859	SSF63592	Flagellar transcriptional activator FlhD
YPA_1860	SSF56784	HAD-like
YPA_1860	SSF81653	Calcium ATPase, transduction domain A
YPA_1860	SSF81660	Metal cation-transporting ATPase, ATP-binding domain N
YPA_1860	SSF81665	Calcium ATPase, transmembrane domain M
YPA_1862	SSF47170	Aspartate receptor, ligand-binding domain
YPA_1862	SSF58104	Methyl-accepting chemotaxis protein (MCP) signaling domain
YPA_1863	SSF58104	Methyl-accepting chemotaxis protein (MCP) signaling domain
YPA_1865	SSF50249	Nucleic acid-binding proteins
YPA_1866	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPA_1867	SSF46689	Homeodomain-like
YPA_1867	SSF53098	Ribonuclease H-like
YPA_1868	SSF49303	beta-Galactosidase/glucuronidase domain
YPA_1868	SSF49785	Galactose-binding domain-like
YPA_1868	SSF51445	(Trans)glycosidases
YPA_1868	SSF74650	Galactose mutarotase-like
YPA_1869	SSF50129	GroES-like
YPA_1869	SSF51735	NAD(P)-binding Rossmann-fold domains
YPA_1872	SSF46785	"Winged helix" DNA-binding domain
YPA_1872	SSF54909	Dimeric alpha+beta barrel
YPA_1875	SSF53254	Phosphoglycerate mutase-like
YPA_1878	SSF46785	"Winged helix" DNA-binding domain
YPA_1879	SSF51735	NAD(P)-binding Rossmann-fold domains
YPA_1880	SSF55785	PYP-like sensor domain (PAS domain)
YPA_1880	SSF58104	Methyl-accepting chemotaxis protein (MCP) signaling domain
YPA_1882	SSF47413	lambda repressor-like DNA-binding domains
YPA_1882	SSF53822	Periplasmic binding protein-like I
YPA_1883	SSF53659	Isocitrate/Isopropylmalate dehydrogenase-like
YPA_1884	SSF55120	Pseudouridine synthase
YPA_1885	SSF55811	Nudix
YPA_1886	SSF52402	Adenine nucleotide alpha hydrolases-like
YPA_1887	SSF101322	YcfC-like
YPA_1888	SSF48557	L-aspartase-like
YPA_1889	SSF56925	OMPA-like
YPA_1890	SSF52172	CheY-like
YPA_1891	SSF47384	Homodimeric domain of signal transducing histidine kinase
YPA_1891	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
YPA_1892	SSF51197	Clavaminate synthase-like
YPA_1893	SSF53187	Zn-dependent exopeptidases
YPA_1893	SSF55031	Bacterial exopeptidase dimerisation domain
YPA_1894	SSF52467	DHS-like NAD/FAD-binding domain
YPA_1895	SSF53067	Actin-like ATPase domain
YPA_1896	SSF53067	Actin-like ATPase domain
YPA_1898	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPA_1900	SSF141259	CarD-like
YPA_1900	SSF143517	TRCF domain-like
YPA_1900	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPA_1905	SSF51905	FAD/NAD(P)-binding domain
YPA_1906	SSF53474	alpha/beta-Hydrolases
YPA_1907	SSF51445	(Trans)glycosidases
YPA_1908	SSF56112	Protein kinase-like (PK-like)
YPA_1911	SSF54197	HIT-like
YPA_1912	SSF51735	NAD(P)-binding Rossmann-fold domains
YPA_1912	SSF53223	Aminoacid dehydrogenase-like, N-terminal domain
YPA_1914	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPA_1915	SSF46689	Homeodomain-like
YPA_1915	SSF53098	Ribonuclease H-like
YPA_1916	SSF143422	Transposase IS200-like
YPA_1917	SSF55604	Glucose permease domain IIB
YPA_1918	SSF51556	Metallo-dependent hydrolases
YPA_1919	SSF48019	post-AAA+ oligomerization domain-like
YPA_1919	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPA_1920	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPA_1922	SSF56752	D-aminoacid aminotransferase-like PLP-dependent enzymes
YPA_1923	SSF143422	Transposase IS200-like
YPA_1924	SSF53901	Thiolase-like
YPA_1925	SSF47336	ACP-like
YPA_1926	SSF51735	NAD(P)-binding Rossmann-fold domains
YPA_1927	SSF52151	FabD/lysophospholipase-like
YPA_1927	SSF55048	Probable ACP-binding domain of malonyl-CoA ACP transacylase
YPA_1928	SSF53901	Thiolase-like
YPA_1929	SSF53659	Isocitrate/Isopropylmalate dehydrogenase-like
YPA_1930	SSF57829	Zn-binding ribosomal proteins
YPA_1932	SSF52972	ITPase-like
YPA_1933	SSF143422	Transposase IS200-like
YPA_1934	SSF55120	Pseudouridine synthase
YPA_1934	SSF55174	Alpha-L RNA-binding motif
YPA_1935	SSF50249	Nucleic acid-binding proteins
YPA_1939	SSF54909	Dimeric alpha+beta barrel
YPA_1940	SSF51556	Metallo-dependent hydrolases
YPA_1941	SSF54857	DNA damage-inducible protein DinI
YPA_1945	SSF51905	FAD/NAD(P)-binding domain
YPA_1945	SSF54373	FAD-linked reductases, C-terminal domain
YPA_1947	SSF46894	C-terminal effector domain of the bipartite response regulators
YPA_1949	SSF52821	Rhodanese/Cell cycle control phosphatase
YPA_1953	SSF103481	Multidrug resistance efflux transporter EmrE
YPA_1954	SSF55729	Acyl-CoA N-acyltransferases (Nat)
YPA_1955	SSF46894	C-terminal effector domain of the bipartite response regulators
YPA_1955	SSF75516	Pheromone-binding domain of LuxR-like quorum-sensing transcription factors
YPA_1956	SSF46785	"Winged helix" DNA-binding domain
YPA_1956	SSF53850	Periplasmic binding protein-like II
YPA_1957	SSF103473	MFS general substrate transporter
YPA_1958	SSF54211	Ribosomal protein S5 domain 2-like
YPA_1959	SSF51430	NAD(P)-linked oxidoreductase
YPA_1964	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPA_1966	SSF50182	Sm-like ribonucleoproteins
YPA_1968	SSF56925	OMPA-like
YPA_1969	SSF75005	Arabinanase/levansucrase/invertase
YPA_1970	SSF75005	Arabinanase/levansucrase/invertase
YPA_1971	SSF161098	MetI-like
YPA_1972	SSF161098	MetI-like
YPA_1973	SSF53850	Periplasmic binding protein-like II
YPA_1974	SSF47413	lambda repressor-like DNA-binding domains
YPA_1974	SSF53822	Periplasmic binding protein-like I
YPA_1975	SSF53738	Phosphoglucomutase, first 3 domains
YPA_1975	SSF55957	Phosphoglucomutase, C-terminal domain
YPA_1976	SSF50331	MOP-like
YPA_1976	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPA_1986	SSF51126	Pectin lyase-like
YPA_1988	SSF52343	Ferredoxin reductase-like, C-terminal NADP-linked domain
YPA_1988	SSF54292	2Fe-2S ferredoxin-like
YPA_1988	SSF63380	Riboflavin synthase domain-like
YPA_1989	SSF50022	ISP domain
YPA_1989	SSF55961	Bet v1-like
YPA_1991	SSF53659	Isocitrate/Isopropylmalate dehydrogenase-like
YPA_1992	SSF46785	"Winged helix" DNA-binding domain
YPA_1992	SSF53850	Periplasmic binding protein-like II
YPA_1993	SSF47413	lambda repressor-like DNA-binding domains
YPA_1993	SSF53822	Periplasmic binding protein-like I
YPA_1995	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPA_1996	SSF53822	Periplasmic binding protein-like I
YPA_1997	SSF50129	GroES-like
YPA_1997	SSF51735	NAD(P)-binding Rossmann-fold domains
YPA_1999	SSF103481	Multidrug resistance efflux transporter EmrE
YPA_2000	SSF55729	Acyl-CoA N-acyltransferases (Nat)
YPA_2001	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
YPA_2002	SSF47240	Ferritin-like
YPA_2003	SSF48452	TPR-like
YPA_2004	SSF53850	Periplasmic binding protein-like II
YPA_2005	SSF161098	MetI-like
YPA_2006	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPA_2007	SSF55785	PYP-like sensor domain (PAS domain)
YPA_2007	SSF58104	Methyl-accepting chemotaxis protein (MCP) signaling domain
YPA_2008	SSF46689	Homeodomain-like
YPA_2008	SSF53098	Ribonuclease H-like
YPA_2009	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPA_2011	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
YPA_2012	SSF159871	YdgH-like
YPA_2014	SSF47648	Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain
YPA_2014	SSF52418	Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain
YPA_2015	SSF56801	Acetyl-CoA synthetase-like
YPA_2016	SSF51604	Enolase C-terminal domain-like
YPA_2016	SSF54826	Enolase N-terminal domain-like
YPA_2017	SSF52096	ClpP/crotonase
YPA_2018	SSF53474	alpha/beta-Hydrolases
YPA_2019	SSF52518	Thiamin diphosphate-binding fold (THDP-binding)
YPA_2020	SSF56322	ADC synthase
YPA_2025	SSF143975	IlvD/EDD N-terminal domain-like
YPA_2025	SSF52016	LeuD/IlvD-like
YPA_2026	SSF143744	GlcG-like
YPA_2027	SSF103473	MFS general substrate transporter
YPA_2028	SSF51735	NAD(P)-binding Rossmann-fold domains
YPA_2028	SSF52283	Formate/glycerate dehydrogenase catalytic domain-like
YPA_2029	SSF47413	lambda repressor-like DNA-binding domains
YPA_2029	SSF53822	Periplasmic binding protein-like I
YPA_2030	SSF51445	(Trans)glycosidases
YPA_2031	SSF51735	NAD(P)-binding Rossmann-fold domains
YPA_2032	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPA_2033	SSF51197	Clavaminate synthase-like
YPA_2040	SSF54862	4Fe-4S ferredoxins
YPA_2042	SSF50692	ADC-like
YPA_2042	SSF53706	Formate dehydrogenase/DMSO reductase, domains 1-3
YPA_2042	SSF54292	2Fe-2S ferredoxin-like
YPA_2042	SSF54862	4Fe-4S ferredoxins
YPA_2043	SSF140490	Nqo1C-terminal domain-like
YPA_2043	SSF142019	Nqo1 FMN-binding domain-like
YPA_2043	SSF142984	Nqo1 middle domain-like
YPA_2044	SSF52833	Thioredoxin-like
YPA_2045	SSF143243	Nqo5-like
YPA_2045	SSF56762	HydB/Nqo4-like
YPA_2046	SSF56770	HydA/Nqo6-like
YPA_2048	SSF46785	"Winged helix" DNA-binding domain
YPA_2048	SSF53850	Periplasmic binding protein-like II
YPA_2049	SSF53383	PLP-dependent transferases
YPA_2050	SSF109604	HD-domain/PDEase-like
YPA_2051	SSF116726	TrkA C-terminal domain-like
YPA_2052	SSF56784	HAD-like
YPA_2053	SSF116960	YfbU-like
YPA_2055	SSF53067	Actin-like ATPase domain
YPA_2056	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPA_2056	SSF53659	Isocitrate/Isopropylmalate dehydrogenase-like
YPA_2056	SSF75138	HprK N-terminal domain-like
YPA_2057	SSF47413	lambda repressor-like DNA-binding domains
YPA_2057	SSF53822	Periplasmic binding protein-like I
YPA_2058	SSF55804	Phoshotransferase/anion transport protein
YPA_2059	SSF52794	PTS system IIB component-like
YPA_2061	SSF55811	Nudix
YPA_2062	SSF56300	Metallo-dependent phosphatases
YPA_2063	SSF141868	EAL domain-like
YPA_2064	SSF51735	NAD(P)-binding Rossmann-fold domains
YPA_2065	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPA_2066	SSF161098	MetI-like
YPA_2067	SSF161098	MetI-like
YPA_2068	SSF53850	Periplasmic binding protein-like II
YPA_2069	SSF46689	Homeodomain-like
YPA_2069	SSF53098	Ribonuclease H-like
YPA_2070	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPA_2071	SSF52507	Homo-oligomeric flavin-containing Cys decarboxylases, HFCD
YPA_2072	SSF53271	PRTase-like
YPA_2072	SSF56235	N-terminal nucleophile aminohydrolases (Ntn hydrolases)
YPA_2074	SSF110997	Sporulation related repeat
YPA_2075	SSF53244	MurD-like peptide ligases, peptide-binding domain
YPA_2075	SSF53623	MurD-like peptide ligases, catalytic domain
YPA_2076	SSF52096	ClpP/crotonase
YPA_2078	SSF55120	Pseudouridine synthase
YPA_2079	SSF51735	NAD(P)-binding Rossmann-fold domains
YPA_2079	SSF55347	Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
YPA_2080	SSF51735	NAD(P)-binding Rossmann-fold domains
YPA_2080	SSF52283	Formate/glycerate dehydrogenase catalytic domain-like
YPA_2081	SSF46689	Homeodomain-like
YPA_2081	SSF51182	RmlC-like cupins
YPA_2082	SSF103481	Multidrug resistance efflux transporter EmrE
YPA_2084	SSF49401	Bacterial adhesins
YPA_2085	SSF53681	Aspartate/glutamate racemase
YPA_2086	SSF53901	Thiolase-like
YPA_2087	SSF51905	FAD/NAD(P)-binding domain
YPA_2087	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
YPA_2091	SSF55166	Hedgehog/DD-peptidase
YPA_2092	SSF103263	Chorismate synthase, AroC
YPA_2093	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
YPA_2094	SSF160443	SMR domain-like
YPA_2096	SSF53254	Phosphoglycerate mutase-like
YPA_2097	SSF48179	6-phosphogluconate dehydrogenase C-terminal domain-like
YPA_2097	SSF51735	NAD(P)-binding Rossmann-fold domains
YPA_2097	SSF52096	ClpP/crotonase
YPA_2098	SSF53901	Thiolase-like
YPA_2100	SSF56935	Porins
YPA_2102	SSF48452	TPR-like
YPA_2104	SSF52833	Thioredoxin-like
YPA_2106	SSF82093	Heme chaperone CcmE
YPA_2110	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPA_2112	SSF140478	LemA-like
YPA_2114	SSF57783	Zinc beta-ribbon
YPA_2114	SSF82057	Prokaryotic SH3-related domain
YPA_2116	SSF160719	gpW/gp25-like
YPA_2117	SSF144059	ImpE-like
YPA_2120	SSF69255	gp5 N-terminal domain-like
YPA_2120	SSF69279	Phage tail proteins
YPA_2120	SSF69349	Phage fibre proteins
YPA_2121	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPA_2122	SSF103088	OmpA-like
YPA_2123	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPA_2124	SSF46689	Homeodomain-like
YPA_2124	SSF53098	Ribonuclease H-like
YPA_2128	SSF141452	Hcp1-like
YPA_2131	SSF49401	Bacterial adhesins
YPA_2134	SSF141729	FimD N-terminal domain-like
YPA_2135	SSF49354	PapD-like
YPA_2135	SSF49584	Periplasmic chaperone C-domain
YPA_2136	SSF49401	Bacterial adhesins
YPA_2137	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPA_2137	SSF81923	Double Clp-N motif
YPA_2141	SSF49401	Bacterial adhesins
YPA_2142	SSF53448	Nucleotide-diphospho-sugar transferases
YPA_2144	SSF103088	OmpA-like
YPA_2145	SSF55724	Mog1p/PsbP-like
YPA_2146	SSF46894	C-terminal effector domain of the bipartite response regulators
YPA_2147	SSF53955	Lysozyme-like
YPA_2148	SSF53850	Periplasmic binding protein-like II
YPA_2149	SSF161098	MetI-like
YPA_2150	SSF50331	MOP-like
YPA_2150	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPA_2152	SSF141452	Hcp1-like
YPA_2154	SSF50692	ADC-like
YPA_2154	SSF53706	Formate dehydrogenase/DMSO reductase, domains 1-3
YPA_2155	SSF54862	4Fe-4S ferredoxins
YPA_2157	SSF89155	TorD-like
YPA_2158	SSF54862	4Fe-4S ferredoxins
YPA_2161	SSF52964	TolB, N-terminal domain
YPA_2163	SSF81342	Transmembrane di-heme cytochromes
YPA_2164	SSF53383	PLP-dependent transferases
YPA_2165	SSF51197	Clavaminate synthase-like
YPA_2166	SSF53067	Actin-like ATPase domain
YPA_2168	SSF46785	"Winged helix" DNA-binding domain
YPA_2168	SSF53850	Periplasmic binding protein-like II
YPA_2169	SSF51430	NAD(P)-linked oxidoreductase
YPA_2173	SSF48163	An anticodon-binding domain of class I aminoacyl-tRNA synthetases
YPA_2173	SSF52374	Nucleotidylyl transferase
YPA_2174	SSF143422	Transposase IS200-like
YPA_2178	SSF47781	RuvA domain 2-like
YPA_2178	SSF50249	Nucleic acid-binding proteins
YPA_2178	SSF52113	BRCT domain
YPA_2178	SSF56091	DNA ligase/mRNA capping enzyme, catalytic domain
YPA_2179	SSF64383	Cell-division protein ZipA, C-terminal domain
YPA_2182	SSF53686	Tryptophan synthase beta subunit-like PLP-dependent enzymes
YPA_2183	SSF55594	HPr-like
YPA_2184	SSF47831	Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain
YPA_2184	SSF51621	Phosphoenolpyruvate/pyruvate domain
YPA_2184	SSF52009	Phosphohistidine domain
YPA_2185	SSF51261	Duplicated hybrid motif
YPA_2186	SSF143422	Transposase IS200-like
YPA_2187	SSF158472	HAMP domain-like
YPA_2187	SSF47384	Homodimeric domain of signal transducing histidine kinase
YPA_2187	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
YPA_2188	SSF46894	C-terminal effector domain of the bipartite response regulators
YPA_2188	SSF52172	CheY-like
YPA_2189	SSF111369	HlyD-like secretion proteins
YPA_2190	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPA_2191	SSF51905	FAD/NAD(P)-binding domain
YPA_2191	SSF52821	Rhodanese/Cell cycle control phosphatase
YPA_2191	SSF55424	FAD/NAD-linked reductases, dimerisation (C-terminal) domain
YPA_2193	SSF53092	Creatinase/prolidase N-terminal domain
YPA_2193	SSF55920	Creatinase/aminopeptidase
YPA_2194	SSF53092	Creatinase/prolidase N-terminal domain
YPA_2195	SSF53383	PLP-dependent transferases
YPA_2196	SSF53300	vWA-like
YPA_2197	SSF47384	Homodimeric domain of signal transducing histidine kinase
YPA_2197	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
YPA_2198	SSF46894	C-terminal effector domain of the bipartite response regulators
YPA_2198	SSF52172	CheY-like
YPA_2199	SSF52058	L domain-like
YPA_2200	SSF53686	Tryptophan synthase beta subunit-like PLP-dependent enzymes
YPA_2201	SSF50331	MOP-like
YPA_2201	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPA_2202	SSF161098	MetI-like
YPA_2203	SSF161098	MetI-like
YPA_2204	SSF53850	Periplasmic binding protein-like II
YPA_2205	SSF103473	MFS general substrate transporter
YPA_2206	SSF46689	Homeodomain-like
YPA_2206	SSF53697	SIS domain
YPA_2207	SSF51197	Clavaminate synthase-like
YPA_2208	SSF53067	Actin-like ATPase domain
YPA_2209	SSF52058	L domain-like
YPA_2210	SSF52058	L domain-like
YPA_2211	SSF51366	Ribulose-phoshate binding barrel
YPA_2212	SSF51569	Aldolase
YPA_2213	SSF54909	Dimeric alpha+beta barrel
YPA_2215	SSF101756	Hypothetical protein YgiW
YPA_2216	SSF103515	Autotransporter
YPA_2216	SSF51126	Pectin lyase-like
YPA_2219	SSF55729	Acyl-CoA N-acyltransferases (Nat)
YPA_2220	SSF102886	Coproporphyrinogen III oxidase
YPA_2222	SSF51735	NAD(P)-binding Rossmann-fold domains
YPA_2222	SSF53223	Aminoacid dehydrogenase-like, N-terminal domain
YPA_2222	SSF53659	Isocitrate/Isopropylmalate dehydrogenase-like
YPA_2223	SSF55811	Nudix
YPA_2224	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPA_2225	SSF46689	Homeodomain-like
YPA_2225	SSF53098	Ribonuclease H-like
YPA_2226	SSF55811	Nudix
YPA_2227	SSF48695	Multiheme cytochromes
YPA_2228	SSF48695	Multiheme cytochromes
YPA_2229	SSF50692	ADC-like
YPA_2229	SSF53706	Formate dehydrogenase/DMSO reductase, domains 1-3
YPA_2231	SSF54862	4Fe-4S ferredoxins
YPA_2232	SSF46894	C-terminal effector domain of the bipartite response regulators
YPA_2232	SSF52172	CheY-like
YPA_2234	SSF82693	Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains
YPA_2234	SSF82714	Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains
YPA_2234	SSF82866	Multidrug efflux transporter AcrB transmembrane domain
YPA_2237	SSF102114	Radical SAM enzymes
YPA_2238	SSF53649	Alkaline phosphatase-like
YPA_2239	SSF50331	MOP-like
YPA_2239	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPA_2240	SSF161098	MetI-like
YPA_2241	SSF53850	Periplasmic binding protein-like II
YPA_2242	SSF48452	TPR-like
YPA_2243	SSF52833	Thioredoxin-like
YPA_2244	SSF53187	Zn-dependent exopeptidases
YPA_2244	SSF55031	Bacterial exopeptidase dimerisation domain
YPA_2245	SSF55166	Hedgehog/DD-peptidase
YPA_2247	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPA_2247	SSF55729	Acyl-CoA N-acyltransferases (Nat)
YPA_2250	SSF56104	SAICAR synthase-like
YPA_2251	SSF143422	Transposase IS200-like
YPA_2253	SSF51569	Aldolase
YPA_2254	SSF55021	ACT-like
YPA_2255	SSF52833	Thioredoxin-like
YPA_2260	SSF48452	TPR-like
YPA_2261	SSF52833	Thioredoxin-like
YPA_2262	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPA_2263	SSF143422	Transposase IS200-like
YPA_2264	SSF53271	PRTase-like
YPA_2265	SSF55326	PurM N-terminal domain-like
YPA_2265	SSF56042	PurM C-terminal domain-like
YPA_2266	SSF53328	Formyltransferase
YPA_2267	SSF55729	Acyl-CoA N-acyltransferases (Nat)
YPA_2270	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPA_2271	SSF161098	MetI-like
YPA_2272	SSF161098	MetI-like
YPA_2272	SSF82171	DPP6 N-terminal domain-like
YPA_2273	SSF140356	PPK N-terminal domain-like
YPA_2273	SSF143724	PHP14-like
YPA_2273	SSF56024	Phospholipase D/nuclease
YPA_2274	SSF109604	HD-domain/PDEase-like
YPA_2274	SSF53067	Actin-like ATPase domain
YPA_2275	SSF158791	MgtE N-terminal domain-like
YPA_2275	SSF161093	MgtE membrane domain-like
YPA_2275	SSF54631	CBS-domain pair
YPA_2276	SSF53067	Actin-like ATPase domain
YPA_2278	SSF46689	Homeodomain-like
YPA_2278	SSF53098	Ribonuclease H-like
YPA_2279	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPA_2280	SSF161098	MetI-like
YPA_2281	SSF161098	MetI-like
YPA_2282	SSF53850	Periplasmic binding protein-like II
YPA_2283	SSF53383	PLP-dependent transferases
YPA_2284	SSF46785	"Winged helix" DNA-binding domain
YPA_2284	SSF53383	PLP-dependent transferases
YPA_2285	SSF50331	MOP-like
YPA_2285	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPA_2286	SSF111369	HlyD-like secretion proteins
YPA_2287	SSF82693	Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains
YPA_2287	SSF82714	Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains
YPA_2287	SSF82866	Multidrug efflux transporter AcrB transmembrane domain
YPA_2288	SSF82693	Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains
YPA_2288	SSF82714	Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains
YPA_2288	SSF82866	Multidrug efflux transporter AcrB transmembrane domain
YPA_2289	SSF103473	MFS general substrate transporter
YPA_2290	SSF158472	HAMP domain-like
YPA_2290	SSF47384	Homodimeric domain of signal transducing histidine kinase
YPA_2290	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
YPA_2291	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
YPA_2292	SSF52172	CheY-like
YPA_2293	SSF160113	YegP-like
YPA_2295	SSF111331	NAD kinase/diacylglycerol kinase-like
YPA_2296	SSF89872	Inhibitor of vertebrate lysozyme, Ivy
YPA_2299	SSF53613	Ribokinase-like
YPA_2308	SSF141452	Hcp1-like
YPA_2309	SSF143422	Transposase IS200-like
YPA_2310	SSF143422	Transposase IS200-like
YPA_2311	SSF52317	Class I glutamine amidotransferase-like
YPA_2311	SSF52402	Adenine nucleotide alpha hydrolases-like
YPA_2311	SSF54810	GMP synthetase C-terminal dimerisation domain
YPA_2312	SSF51412	Inosine monophosphate dehydrogenase (IMPDH)
YPA_2312	SSF54631	CBS-domain pair
YPA_2315	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPA_2316	SSF50998	Quinoprotein alcohol dehydrogenase-like
YPA_2317	SSF48452	TPR-like
YPA_2318	SSF52954	Class II aaRS ABD-related
YPA_2318	SSF55681	Class II aaRS and biotin synthetases
YPA_2319	SSF51604	Enolase C-terminal domain-like
YPA_2319	SSF56014	Nitrite and sulphite reductase 4Fe-4S domain-like
YPA_2320	SSF47413	lambda repressor-like DNA-binding domains
YPA_2321	SSF48452	TPR-like
YPA_2322	SSF102114	Radical SAM enzymes
YPA_2323	SSF54919	Nucleoside diphosphate kinase, NDK
YPA_2324	SSF49695	gamma-Crystallin-like
YPA_2326	SSF103515	Autotransporter
YPA_2326	SSF51126	Pectin lyase-like
YPA_2327	SSF103515	Autotransporter
YPA_2327	SSF51126	Pectin lyase-like
YPA_2328	SSF103515	Autotransporter
YPA_2330	SSF53187	Zn-dependent exopeptidases
YPA_2331	SSF140319	IscX-like
YPA_2332	SSF54292	2Fe-2S ferredoxin-like
YPA_2333	SSF100920	Heat shock protein 70kD (HSP70), peptide-binding domain
YPA_2333	SSF100934	Heat shock protein 70kD (HSP70), C-terminal subdomain
YPA_2333	SSF53067	Actin-like ATPase domain
YPA_2334	SSF46565	Chaperone J-domain
YPA_2334	SSF47144	HSC20 (HSCB), C-terminal oligomerisation domain
YPA_2335	SSF89360	HesB-like domain
YPA_2336	SSF82649	SufE/NifU
YPA_2337	SSF53383	PLP-dependent transferases
YPA_2338	SSF46785	"Winged helix" DNA-binding domain
YPA_2339	SSF75217	alpha/beta knot
YPA_2340	SSF56655	Carbohydrate phosphatase
YPA_2343	SSF63520	PTS-regulatory domain, PRD
YPA_2344	SSF103473	MFS general substrate transporter
YPA_2345	SSF56925	OMPA-like
YPA_2347	SSF53383	PLP-dependent transferases
YPA_2348	SSF46458	Globin-like
YPA_2348	SSF52343	Ferredoxin reductase-like, C-terminal NADP-linked domain
YPA_2348	SSF63380	Riboflavin synthase domain-like
YPA_2349	SSF46785	"Winged helix" DNA-binding domain
YPA_2349	SSF53850	Periplasmic binding protein-like II
YPA_2350	SSF53850	Periplasmic binding protein-like II
YPA_2351	SSF54913	GlnB-like
YPA_2352	SSF52402	Adenine nucleotide alpha hydrolases-like
YPA_2352	SSF56317	Carbon-nitrogen hydrolase
YPA_2353	SSF46689	Homeodomain-like
YPA_2353	SSF52172	CheY-like
YPA_2353	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPA_2355	SSF47384	Homodimeric domain of signal transducing histidine kinase
YPA_2355	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
YPA_2356	SSF143422	Transposase IS200-like
YPA_2360	SSF109736	FGAM synthase PurL, linker domain
YPA_2360	SSF52317	Class I glutamine amidotransferase-like
YPA_2360	SSF55326	PurM N-terminal domain-like
YPA_2360	SSF56042	PurM C-terminal domain-like
YPA_2360	SSF82697	PurS-like
YPA_2361	SSF53850	Periplasmic binding protein-like II
YPA_2361	SSF53955	Lysozyme-like
YPA_2362	SSF53927	Cytidine deaminase-like
YPA_2363	SSF56784	HAD-like
YPA_2364	SSF46934	UBA-like
YPA_2364	SSF53697	SIS domain
YPA_2365	SSF46689	Homeodomain-like
YPA_2365	SSF53697	SIS domain
YPA_2366	SSF54862	4Fe-4S ferredoxins
YPA_2367	SSF143422	Transposase IS200-like
YPA_2368	SSF56214	4'-phosphopantetheinyl transferase
YPA_2369	SSF63892	Pyridoxine 5'-phosphate synthase
YPA_2370	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPA_2371	SSF46689	Homeodomain-like
YPA_2371	SSF53098	Ribonuclease H-like
YPA_2372	SSF88713	Glycoside hydrolase/deacetylase
YPA_2373	SSF53850	Periplasmic binding protein-like II
YPA_2374	SSF161098	MetI-like
YPA_2375	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPA_2375	SSF54631	CBS-domain pair
YPA_2376	SSF47240	Ferritin-like
YPA_2377	SSF48168	R1 subunit of ribonucleotide reductase, N-terminal domain
YPA_2377	SSF51998	PFL-like glycyl radical enzymes
YPA_2378	SSF52218	Flavoproteins
YPA_2379	SSF52833	Thioredoxin-like
YPA_2381	SSF159894	YgaC/TfoX-N like
YPA_2383	SSF159894	YgaC/TfoX-N like
YPA_2386	SSF50249	Nucleic acid-binding proteins
YPA_2387	SSF53850	Periplasmic binding protein-like II
YPA_2388	SSF161098	MetI-like
YPA_2389	SSF161098	MetI-like
YPA_2390	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPA_2391	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPA_2392	SSF54111	Urease, gamma-subunit
YPA_2393	SSF51278	Urease, beta-subunit
YPA_2394	SSF51338	Composite domain of metallo-dependent hydrolases
YPA_2394	SSF51556	Metallo-dependent hydrolases
YPA_2395	SSF69287	Urease metallochaperone UreE, N-terminal domain
YPA_2397	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPA_2402	SSF47752	Protein HNS-dependent expression A; HdeA
YPA_2403	SSF51735	NAD(P)-binding Rossmann-fold domains
YPA_2403	SSF81324	Voltage-gated potassium channels
YPA_2407	SSF52794	PTS system IIB component-like
YPA_2409	SSF46973	Enzyme IIa from lactose specific PTS, IIa-lac
YPA_2410	SSF46689	Homeodomain-like
YPA_2410	SSF51182	RmlC-like cupins
YPA_2411	SSF88713	Glycoside hydrolase/deacetylase
YPA_2413	SSF47598	Ribbon-helix-helix
YPA_2413	SSF82808	Replication modulator SeqA, C-terminal DNA-binding domain
YPA_2414	SSF53738	Phosphoglucomutase, first 3 domains
YPA_2414	SSF55957	Phosphoglucomutase, C-terminal domain
YPA_2417	SSF103481	Multidrug resistance efflux transporter EmrE
YPA_2418	SSF52172	CheY-like
YPA_2419	SSF47384	Homodimeric domain of signal transducing histidine kinase
YPA_2419	SSF52402	Adenine nucleotide alpha hydrolases-like
YPA_2419	SSF55781	GAF domain-like
YPA_2419	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
YPA_2421	SSF56784	HAD-like
YPA_2421	SSF81653	Calcium ATPase, transduction domain A
YPA_2421	SSF81660	Metal cation-transporting ATPase, ATP-binding domain N
YPA_2421	SSF81665	Calcium ATPase, transmembrane domain M
YPA_2426	SSF48173	Cryptochrome/photolyase FAD-binding domain
YPA_2426	SSF52425	Cryptochrome/photolyase, N-terminal domain
YPA_2427	SSF56281	Metallo-hydrolase/oxidoreductase
YPA_2428	SSF102705	NIF3 (NGG1p interacting factor 3)-like
YPA_2429	SSF160467	PH0987 N-terminal domain-like
YPA_2429	SSF50891	Cyclophilin-like
YPA_2431	SSF50891	Cyclophilin-like
YPA_2432	SSF88713	Glycoside hydrolase/deacetylase
YPA_2436	SSF53182	Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase)
YPA_2437	SSF52141	Uracil-DNA glycosylase-like
YPA_2438	SSF51998	PFL-like glycyl radical enzymes
YPA_2439	SSF53474	alpha/beta-Hydrolases
YPA_2440	SSF48403	Ankyrin repeat
YPA_2442	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPA_2443	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
YPA_2444	SSF46977	Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain
YPA_2444	SSF51905	FAD/NAD(P)-binding domain
YPA_2444	SSF56425	Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain
YPA_2445	SSF88659	Sigma3 and sigma4 domains of RNA polymerase sigma factors
YPA_2445	SSF88946	Sigma2 domain of RNA polymerase sigma factors
YPA_2446	SSF89069	N-terminal, cytoplasmic domain of anti-sigmaE factor RseA
YPA_2450	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPA_2450	SSF54980	EF-G C-terminal domain-like
YPA_2451	SSF51306	LexA/Signal peptidase
YPA_2452	SSF54768	dsRNA-binding domain-like
YPA_2452	SSF69065	RNase III domain-like
YPA_2453	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPA_2453	SSF54814	Prokaryotic type KH domain (KH-domain type II)
YPA_2454	SSF50249	Nucleic acid-binding proteins
YPA_2454	SSF57863	ArfGap/RecO-like zinc finger
YPA_2455	SSF46689	Homeodomain-like
YPA_2455	SSF53098	Ribonuclease H-like
YPA_2456	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPA_2458	SSF46689	Homeodomain-like
YPA_2460	SSF53474	alpha/beta-Hydrolases
YPA_2462	SSF52218	Flavoproteins
YPA_2463	SSF46785	"Winged helix" DNA-binding domain
YPA_2464	SSF51445	(Trans)glycosidases
YPA_2464	SSF55545	beta-N-acetylhexosaminidase-like domain
YPA_2464	SSF81296	E set domains
YPA_2465	SSF49384	Carbohydrate-binding domain
YPA_2467	SSF50715	Ribosomal protein L25-like
YPA_2467	SSF52374	Nucleotidylyl transferase
YPA_2468	SSF143422	Transposase IS200-like
YPA_2469	SSF51261	Duplicated hybrid motif
YPA_2469	SSF55604	Glucose permease domain IIB
YPA_2470	SSF100950	NagB/RpiA/CoA transferase-like
YPA_2471	SSF51338	Composite domain of metallo-dependent hydrolases
YPA_2471	SSF51556	Metallo-dependent hydrolases
YPA_2472	SSF46785	"Winged helix" DNA-binding domain
YPA_2472	SSF53067	Actin-like ATPase domain
YPA_2473	SSF56784	HAD-like
YPA_2474	SSF52402	Adenine nucleotide alpha hydrolases-like
YPA_2474	SSF56235	N-terminal nucleophile aminohydrolases (Ntn hydrolases)
YPA_2476	SSF51905	FAD/NAD(P)-binding domain
YPA_2477	SSF102114	Radical SAM enzymes
YPA_2478	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPA_2479	SSF55486	Metalloproteases ("zincins"), catalytic domain
YPA_2480	SSF54631	CBS-domain pair
YPA_2480	SSF56176	FAD-binding/transporter-associated domain-like
YPA_2481	SSF56317	Carbon-nitrogen hydrolase
YPA_2482	SSF53850	Periplasmic binding protein-like II
YPA_2483	SSF161098	MetI-like
YPA_2484	SSF161098	MetI-like
YPA_2485	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPA_2487	SSF47323	Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
YPA_2487	SSF50677	ValRS/IleRS/LeuRS editing domain
YPA_2487	SSF52374	Nucleotidylyl transferase
YPA_2489	SSF48019	post-AAA+ oligomerization domain-like
YPA_2489	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPA_2490	SSF52374	Nucleotidylyl transferase
YPA_2491	SSF81301	Nucleotidyltransferase
YPA_2492	SSF75217	alpha/beta knot
YPA_2493	SSF56519	Penicillin binding protein dimerisation domain
YPA_2493	SSF56601	beta-lactamase/transpeptidase-like
YPA_2495	SSF110997	Sporulation related repeat
YPA_2495	SSF50685	Barwin-like endoglucanases
YPA_2496	SSF46689	Homeodomain-like
YPA_2496	SSF53098	Ribonuclease H-like
YPA_2497	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPA_2498	SSF56601	beta-lactamase/transpeptidase-like
YPA_2498	SSF69189	Penicillin-binding protein associated domain
YPA_2499	SSF117991	YbeD/HP0495-like
YPA_2500	SSF55681	Class II aaRS and biotin synthetases
YPA_2501	SSF102114	Radical SAM enzymes
YPA_2504	SSF50249	Nucleic acid-binding proteins
YPA_2505	SSF50249	Nucleic acid-binding proteins
YPA_2506	SSF46894	C-terminal effector domain of the bipartite response regulators
YPA_2509	SSF46575	DNA polymerase III theta subunit-like
YPA_2510	SSF54909	Dimeric alpha+beta barrel
YPA_2511	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPA_2511	SSF90123	ABC transporter transmembrane region
YPA_2513	SSF51182	RmlC-like cupins
YPA_2514	SSF51658	Xylose isomerase-like
YPA_2516	SSF53613	Ribokinase-like
YPA_2517	SSF51735	NAD(P)-binding Rossmann-fold domains
YPA_2517	SSF55347	Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
YPA_2519	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPA_2520	SSF53822	Periplasmic binding protein-like I
YPA_2521	SSF55347	Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
YPA_2522	SSF51735	NAD(P)-binding Rossmann-fold domains
YPA_2523	SSF52467	DHS-like NAD/FAD-binding domain
YPA_2523	SSF52518	Thiamin diphosphate-binding fold (THDP-binding)
YPA_2524	SSF53720	ALDH-like
YPA_2525	SSF46689	Homeodomain-like
YPA_2525	SSF53697	SIS domain
YPA_2528	SSF48239	Terpenoid cyclases/Protein prenyltransferases
YPA_2529	SSF53955	Lysozyme-like
YPA_2531	SSF56601	beta-lactamase/transpeptidase-like
YPA_2532	SSF47413	lambda repressor-like DNA-binding domains
YPA_2538	SSF141452	Hcp1-like
YPA_2541	SSF103515	Autotransporter
YPA_2541	SSF51126	Pectin lyase-like
YPA_2548	SSF51445	(Trans)glycosidases
YPA_2548	SSF52279	Beta-D-glucan exohydrolase, C-terminal domain
YPA_2551	SSF51430	NAD(P)-linked oxidoreductase
YPA_2552	SSF51430	NAD(P)-linked oxidoreductase
YPA_2553	SSF46785	"Winged helix" DNA-binding domain
YPA_2553	SSF53850	Periplasmic binding protein-like II
YPA_2554	SSF46689	Homeodomain-like
YPA_2554	SSF53098	Ribonuclease H-like
YPA_2555	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPA_2558	SSF52799	(Phosphotyrosine protein) phosphatases II
YPA_2559	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
YPA_2559	SSF53474	alpha/beta-Hydrolases
YPA_2560	SSF69593	Glycerol-3-phosphate (1)-acyltransferase
YPA_2565	SSF51735	NAD(P)-binding Rossmann-fold domains
YPA_2565	SSF53223	Aminoacid dehydrogenase-like, N-terminal domain
YPA_2566	SSF55174	Alpha-L RNA-binding motif
YPA_2567	SSF143422	Transposase IS200-like
YPA_2568	SSF47323	Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
YPA_2568	SSF52374	Nucleotidylyl transferase
YPA_2569	SSF50891	Cyclophilin-like
YPA_2570	SSF56300	Metallo-dependent phosphatases
YPA_2571	SSF52255	N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE)
YPA_2572	SSF51246	Rudiment single hybrid motif
YPA_2572	SSF52440	PreATP-grasp domain
YPA_2572	SSF56059	Glutathione synthetase ATP-binding domain-like
YPA_2574	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPA_2575	SSF52266	SGNH hydrolase
YPA_2576	SSF51735	NAD(P)-binding Rossmann-fold domains
YPA_2577	SSF48452	TPR-like
YPA_2577	SSF52833	Thioredoxin-like
YPA_2578	SSF117892	Band 7/SPFH domain
YPA_2579	SSF141322	NfeD domain-like
YPA_2580	SSF46955	Putative DNA-binding domain
YPA_2581	SSF55008	HMA, heavy metal-associated domain
YPA_2581	SSF56784	HAD-like
YPA_2581	SSF81653	Calcium ATPase, transduction domain A
YPA_2581	SSF81665	Calcium ATPase, transmembrane domain M
YPA_2583	SSF55826	YbaK/ProRS associated domain
YPA_2585	SSF55816	5'-nucleotidase (syn. UDP-sugar hydrolase), C-terminal domain
YPA_2586	SSF56300	Metallo-dependent phosphatases
YPA_2587	SSF56300	Metallo-dependent phosphatases
YPA_2588	SSF103473	MFS general substrate transporter
YPA_2589	SSF51735	NAD(P)-binding Rossmann-fold domains
YPA_2590	SSF53613	Ribokinase-like
YPA_2591	SSF160355	Bacterial polysaccharide co-polymerase-like
YPA_2592	SSF53738	Phosphoglucomutase, first 3 domains
YPA_2592	SSF55957	Phosphoglucomutase, C-terminal domain
YPA_2593	SSF53448	Nucleotide-diphospho-sugar transferases
YPA_2594	SSF51182	RmlC-like cupins
YPA_2594	SSF53448	Nucleotide-diphospho-sugar transferases
YPA_2595	SSF51735	NAD(P)-binding Rossmann-fold domains
YPA_2596	SSF51735	NAD(P)-binding Rossmann-fold domains
YPA_2597	SSF51735	NAD(P)-binding Rossmann-fold domains
YPA_2598	SSF53756	UDP-Glycosyltransferase/glycogen phosphorylase
YPA_2600	SSF53756	UDP-Glycosyltransferase/glycogen phosphorylase
YPA_2603	SSF51905	FAD/NAD(P)-binding domain
YPA_2604	SSF51735	NAD(P)-binding Rossmann-fold domains
YPA_2605	SSF53383	PLP-dependent transferases
YPA_2606	SSF51735	NAD(P)-binding Rossmann-fold domains
YPA_2607	SSF51735	NAD(P)-binding Rossmann-fold domains
YPA_2608	SSF53448	Nucleotide-diphospho-sugar transferases
YPA_2609	SSF52343	Ferredoxin reductase-like, C-terminal NADP-linked domain
YPA_2609	SSF54292	2Fe-2S ferredoxin-like
YPA_2609	SSF63380	Riboflavin synthase domain-like
YPA_2610	SSF53800	Chelatase
YPA_2611	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPA_2612	SSF110942	HSP90 C-terminal domain
YPA_2612	SSF54211	Ribosomal protein S5 domain 2-like
YPA_2612	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
YPA_2614	SSF111304	Recombination protein RecR
YPA_2615	SSF82607	YbaB-like
YPA_2616	SSF48019	post-AAA+ oligomerization domain-like
YPA_2616	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPA_2617	SSF53271	PRTase-like
YPA_2621	SSF50182	Sm-like ribonucleoproteins
YPA_2621	SSF82689	Mechanosensitive channel protein MscS (YggB), C-terminal domain
YPA_2621	SSF82861	Mechanosensitive channel protein MscS (YggB), transmembrane region
YPA_2622	SSF46689	Homeodomain-like
YPA_2622	SSF53098	Ribonuclease H-like
YPA_2623	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPA_2625	SSF75169	DsrEFH-like
YPA_2626	SSF46689	Homeodomain-like
YPA_2626	SSF48498	Tetracyclin repressor-like, C-terminal domain
YPA_2627	SSF111369	HlyD-like secretion proteins
YPA_2628	SSF82693	Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains
YPA_2628	SSF82714	Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains
YPA_2628	SSF82866	Multidrug efflux transporter AcrB transmembrane domain
YPA_2629	SSF143800	L28p-like
YPA_2630	SSF57840	Ribosomal protein L36
YPA_2633	SSF68989	Hemolysin expression modulating protein HHA
YPA_2634	SSF46767	Methylated DNA-protein cysteine methyltransferase, C-terminal domain
YPA_2636	SSF54637	Thioesterase/thiol ester dehydrase-isomerase
YPA_2637	SSF111352	Ammonium transporter
YPA_2638	SSF54913	GlnB-like
YPA_2639	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPA_2639	SSF90123	ABC transporter transmembrane region
YPA_2640	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPA_2640	SSF90123	ABC transporter transmembrane region
YPA_2641	SSF46785	"Winged helix" DNA-binding domain
YPA_2641	SSF54909	Dimeric alpha+beta barrel
YPA_2642	SSF53686	Tryptophan synthase beta subunit-like PLP-dependent enzymes
YPA_2643	SSF56784	HAD-like
YPA_2644	SSF53850	Periplasmic binding protein-like II
YPA_2645	SSF52402	Adenine nucleotide alpha hydrolases-like
YPA_2646	SSF54637	Thioesterase/thiol ester dehydrase-isomerase
YPA_2647	SSF47781	RuvA domain 2-like
YPA_2648	SSF109998	Triger factor/SurA peptide-binding domain-like
YPA_2648	SSF54534	FKBP-like
YPA_2649	SSF47729	IHF-like DNA-binding proteins
YPA_2650	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPA_2650	SSF54211	Ribosomal protein S5 domain 2-like
YPA_2650	SSF88697	PUA domain-like
YPA_2651	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPA_2651	SSF57716	Glucocorticoid receptor-like (DNA-binding domain)
YPA_2652	SSF52096	ClpP/crotonase
YPA_2653	SSF102735	Trigger factor ribosome-binding domain
YPA_2653	SSF109998	Triger factor/SurA peptide-binding domain-like
YPA_2653	SSF54534	FKBP-like
YPA_2654	SSF82657	BolA-like
YPA_2656	SSF103473	MFS general substrate transporter
YPA_2657	SSF111364	Tsx-like channel
YPA_2658	SSF49503	Cupredoxins
YPA_2658	SSF81464	Cytochrome c oxidase subunit II-like, transmembrane region
YPA_2659	SSF81442	Cytochrome c oxidase subunit I-like
YPA_2660	SSF81452	Cytochrome c oxidase subunit III-like
YPA_2663	SSF103473	MFS general substrate transporter
YPA_2664	SSF89963	YajQ-like
YPA_2665	SSF48179	6-phosphogluconate dehydrogenase C-terminal domain-like
YPA_2665	SSF51735	NAD(P)-binding Rossmann-fold domains
YPA_2666	SSF52317	Class I glutamine amidotransferase-like
YPA_2667	SSF143437	THUMP domain-like
YPA_2667	SSF52402	Adenine nucleotide alpha hydrolases-like
YPA_2667	SSF52821	Rhodanese/Cell cycle control phosphatase
YPA_2669	SSF116842	XseB-like
YPA_2670	SSF48576	Terpenoid synthases
YPA_2671	SSF52518	Thiamin diphosphate-binding fold (THDP-binding)
YPA_2671	SSF52922	TK C-terminal domain-like
YPA_2672	SSF143422	Transposase IS200-like
YPA_2673	SSF101307	YutG-like
YPA_2674	SSF55326	PurM N-terminal domain-like
YPA_2674	SSF56042	PurM C-terminal domain-like
YPA_2675	SSF48013	NusB-like
YPA_2676	SSF52121	Lumazine synthase
YPA_2677	SSF53597	Dihydrofolate reductase-like
YPA_2677	SSF53927	Cytidine deaminase-like
YPA_2681	SSF143422	Transposase IS200-like
YPA_2682	SSF143422	Transposase IS200-like
YPA_2683	SSF82866	Multidrug efflux transporter AcrB transmembrane domain
YPA_2684	SSF82866	Multidrug efflux transporter AcrB transmembrane domain
YPA_2686	SSF51713	tRNA-guanine transglycosylase
YPA_2687	SSF111337	QueA-like
YPA_2689	SSF52833	Thioredoxin-like
YPA_2690	SSF56235	N-terminal nucleophile aminohydrolases (Ntn hydrolases)
YPA_2691	SSF56235	N-terminal nucleophile aminohydrolases (Ntn hydrolases)
YPA_2692	SSF51735	NAD(P)-binding Rossmann-fold domains
YPA_2693	SSF51011	Glycosyl hydrolase domain
YPA_2693	SSF51445	(Trans)glycosidases
YPA_2693	SSF81296	E set domains
YPA_2696	SSF53850	Periplasmic binding protein-like II
YPA_2697	SSF47384	Homodimeric domain of signal transducing histidine kinase
YPA_2697	SSF55785	PYP-like sensor domain (PAS domain)
YPA_2697	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
YPA_2698	SSF46894	C-terminal effector domain of the bipartite response regulators
YPA_2698	SSF52172	CheY-like
YPA_2699	SSF56300	Metallo-dependent phosphatases
YPA_2700	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPA_2701	SSF46689	Homeodomain-like
YPA_2701	SSF53098	Ribonuclease H-like
YPA_2702	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPA_2703	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPA_2704	SSF53067	Actin-like ATPase domain
YPA_2706	SSF51182	RmlC-like cupins
YPA_2707	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPA_2708	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
YPA_2709	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
YPA_2713	SSF53720	ALDH-like
YPA_2714	SSF53633	Carbamate kinase-like
YPA_2714	SSF88697	PUA domain-like
YPA_2716	SSF53474	alpha/beta-Hydrolases
YPA_2717	SSF53271	PRTase-like
YPA_2718	SSF49299	PKD domain
YPA_2718	SSF81296	E set domains
YPA_2719	SSF46785	"Winged helix" DNA-binding domain
YPA_2719	SSF53850	Periplasmic binding protein-like II
YPA_2720	SSF53187	Zn-dependent exopeptidases
YPA_2721	SSF100879	Lesion bypass DNA polymerase (Y-family), little finger domain
YPA_2721	SSF56672	DNA/RNA polymerases
YPA_2722	SSF51695	PLC-like phosphodiesterases
YPA_2724	SSF143631	ApbE-like
YPA_2725	SSF52343	Ferredoxin reductase-like, C-terminal NADP-linked domain
YPA_2725	SSF54292	2Fe-2S ferredoxin-like
YPA_2725	SSF63380	Riboflavin synthase domain-like
YPA_2732	SSF141523	L,D-transpeptidase catalytic domain-like
YPA_2733	SSF56235	N-terminal nucleophile aminohydrolases (Ntn hydrolases)
YPA_2734	SSF53697	SIS domain
YPA_2735	SSF47203	Acyl-CoA dehydrogenase C-terminal domain-like
YPA_2735	SSF56645	Acyl-CoA dehydrogenase NM domain-like
YPA_2738	SSF51126	Pectin lyase-like
YPA_2740	SSF53187	Zn-dependent exopeptidases
YPA_2740	SSF55031	Bacterial exopeptidase dimerisation domain
YPA_2741	SSF53383	PLP-dependent transferases
YPA_2742	SSF46689	Homeodomain-like
YPA_2742	SSF53098	Ribonuclease H-like
YPA_2743	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPA_2744	SSF53383	PLP-dependent transferases
YPA_2745	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPA_2746	SSF161098	MetI-like
YPA_2747	SSF161098	MetI-like
YPA_2748	SSF53850	Periplasmic binding protein-like II
YPA_2749	SSF46689	Homeodomain-like
YPA_2749	SSF53697	SIS domain
YPA_2752	SSF75304	Amidase signature (AS) enzymes
YPA_2753	SSF54427	NTF2-like
YPA_2754	SSF103473	MFS general substrate transporter
YPA_2757	SSF46785	"Winged helix" DNA-binding domain
YPA_2758	SSF111369	HlyD-like secretion proteins
YPA_2759	SSF103473	MFS general substrate transporter
YPA_2760	SSF55315	L30e-like
YPA_2760	SSF75217	alpha/beta knot
YPA_2761	SSF52833	Thioredoxin-like
YPA_2763	SSF51735	NAD(P)-binding Rossmann-fold domains
YPA_2763	SSF52210	Succinyl-CoA synthetase domains
YPA_2763	SSF55729	Acyl-CoA N-acyltransferases (Nat)
YPA_2763	SSF56059	Glutathione synthetase ATP-binding domain-like
YPA_2764	SSF56024	Phospholipase D/nuclease
YPA_2766	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPA_2766	SSF81923	Double Clp-N motif
YPA_2767	SSF64438	CNF1/YfiH-like putative cysteine hydrolases
YPA_2768	SSF55120	Pseudouridine synthase
YPA_2768	SSF55174	Alpha-L RNA-binding motif
YPA_2769	SSF48452	TPR-like
YPA_2770	SSF69754	Ribosome binding protein Y (YfiA homologue)
YPA_2771	SSF143422	Transposase IS200-like
YPA_2772	SSF143422	Transposase IS200-like
YPA_2773	SSF48600	Chorismate mutase II
YPA_2773	SSF53850	Periplasmic binding protein-like II
YPA_2774	SSF46689	Homeodomain-like
YPA_2774	SSF53098	Ribonuclease H-like
YPA_2775	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPA_2776	SSF53790	Tetrapyrrole methylase
YPA_2777	SSF52402	Adenine nucleotide alpha hydrolases-like
YPA_2778	SSF50447	Translation proteins
YPA_2778	SSF50465	EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
YPA_2778	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPA_2779	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPA_2782	SSF53448	Nucleotide-diphospho-sugar transferases
YPA_2783	SSF69765	IpsF-like
YPA_2784	SSF55120	Pseudouridine synthase
YPA_2785	SSF64167	SurE-like
YPA_2786	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
YPA_2787	SSF51261	Duplicated hybrid motif
YPA_2788	SSF88659	Sigma3 and sigma4 domains of RNA polymerase sigma factors
YPA_2788	SSF88946	Sigma2 domain of RNA polymerase sigma factors
YPA_2789	SSF48334	DNA repair protein MutS, domain III
YPA_2789	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPA_2789	SSF53150	DNA repair protein MutS, domain II
YPA_2789	SSF55271	DNA repair protein MutS, domain I
YPA_2791	SSF89623	Ribose/Galactose isomerase RpiB/AlsB
YPA_2792	SSF50129	GroES-like
YPA_2792	SSF51735	NAD(P)-binding Rossmann-fold domains
YPA_2793	SSF51735	NAD(P)-binding Rossmann-fold domains
YPA_2794	SSF82549	DAK1/DegV-like
YPA_2795	SSF101473	DhaL-like
YPA_2796	SSF100950	NagB/RpiA/CoA transferase-like
YPA_2798	SSF46785	"Winged helix" DNA-binding domain
YPA_2800	SSF53850	Periplasmic binding protein-like II
YPA_2801	SSF46626	Cytochrome c
YPA_2803	SSF56935	Porins
YPA_2804	SSF56935	Porins
YPA_2807	SSF55920	Creatinase/aminopeptidase
YPA_2809	SSF117457	FumA C-terminal domain-like
YPA_2810	SSF53067	Actin-like ATPase domain
YPA_2811	SSF51658	Xylose isomerase-like
YPA_2814	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPA_2815	SSF143422	Transposase IS200-like
YPA_2816	SSF53822	Periplasmic binding protein-like I
YPA_2817	SSF100950	NagB/RpiA/CoA transferase-like
YPA_2817	SSF46785	"Winged helix" DNA-binding domain
YPA_2818	SSF53639	AraD/HMP-PK domain-like
YPA_2819	SSF50692	ADC-like
YPA_2819	SSF53706	Formate dehydrogenase/DMSO reductase, domains 1-3
YPA_2820	SSF54862	4Fe-4S ferredoxins
YPA_2822	SSF89155	TorD-like
YPA_2823	SSF81342	Transmembrane di-heme cytochromes
YPA_2824	SSF47175	Cytochromes
YPA_2825	SSF48113	Heme-dependent peroxidases
YPA_2826	SSF53822	Periplasmic binding protein-like I
YPA_2827	SSF141318	TM0957-like
YPA_2828	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPA_2830	SSF52518	Thiamin diphosphate-binding fold (THDP-binding)
YPA_2831	SSF52518	Thiamin diphosphate-binding fold (THDP-binding)
YPA_2831	SSF52922	TK C-terminal domain-like
YPA_2832	SSF53067	Actin-like ATPase domain
YPA_2833	SSF53743	FucI/AraA N-terminal and middle domains
YPA_2835	SSF100950	NagB/RpiA/CoA transferase-like
YPA_2835	SSF46785	"Winged helix" DNA-binding domain
YPA_2836	SSF103473	MFS general substrate transporter
YPA_2837	SSF142433	CinA-like
YPA_2838	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPA_2838	SSF54752	RecA protein, C-terminal domain
YPA_2840	SSF101353	Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS)
YPA_2840	SSF50447	Translation proteins
YPA_2840	SSF55186	ThrRS/AlaRS common domain
YPA_2840	SSF55681	Class II aaRS and biotin synthetases
YPA_2841	SSF56784	HAD-like
YPA_2843	SSF55931	Glutamine synthetase/guanido kinase
YPA_2844	SSF63411	LuxS/MPP-like metallohydrolase
YPA_2845	SSF143422	Transposase IS200-like
YPA_2846	SSF54631	CBS-domain pair
YPA_2846	SSF56176	FAD-binding/transporter-associated domain-like
YPA_2848	SSF47446	Signal peptide-binding domain
YPA_2848	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPA_2849	SSF54565	Ribosomal protein S16
YPA_2850	SSF50346	PRC-barrel domain
YPA_2850	SSF50447	Translation proteins
YPA_2851	SSF75217	alpha/beta knot
YPA_2852	SSF50104	Translation proteins SH3-like domain
YPA_2853	SSF143422	Transposase IS200-like
YPA_2858	SSF52172	CheY-like
YPA_2859	SSF51569	Aldolase
YPA_2860	SSF48179	6-phosphogluconate dehydrogenase C-terminal domain-like
YPA_2860	SSF48600	Chorismate mutase II
YPA_2860	SSF51735	NAD(P)-binding Rossmann-fold domains
YPA_2861	SSF55021	ACT-like
YPA_2862	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPA_2863	SSF46689	Homeodomain-like
YPA_2863	SSF53098	Ribonuclease H-like
YPA_2864	SSF51735	NAD(P)-binding Rossmann-fold domains
YPA_2864	SSF75615	Siroheme synthase middle domains-like
YPA_2865	SSF54786	YcfA/nrd intein domain
YPA_2866	SSF143100	TTHA1013/TTHA0281-like
YPA_2867	SSF52402	Adenine nucleotide alpha hydrolases-like
YPA_2868	SSF52402	Adenine nucleotide alpha hydrolases-like
YPA_2869	SSF55124	Nitrite/Sulfite reductase N-terminal domain-like
YPA_2869	SSF56014	Nitrite and sulphite reductase 4Fe-4S domain-like
YPA_2870	SSF52218	Flavoproteins
YPA_2870	SSF52343	Ferredoxin reductase-like, C-terminal NADP-linked domain
YPA_2870	SSF63380	Riboflavin synthase domain-like
YPA_2871	SSF55620	Tetrahydrobiopterin biosynthesis enzymes-like
YPA_2872	SSF102114	Radical SAM enzymes
YPA_2873	SSF49329	Cu,Zn superoxide dismutase-like
YPA_2874	SSF51604	Enolase C-terminal domain-like
YPA_2874	SSF54826	Enolase N-terminal domain-like
YPA_2875	SSF52317	Class I glutamine amidotransferase-like
YPA_2875	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPA_2876	SSF101386	all-alpha NTP pyrophosphatases
YPA_2877	SSF109604	HD-domain/PDEase-like
YPA_2877	SSF55021	ACT-like
YPA_2877	SSF81271	TGS-like
YPA_2877	SSF81301	Nucleotidyltransferase
YPA_2880	SSF158472	HAMP domain-like
YPA_2880	SSF47226	Histidine-containing phosphotransfer domain, HPT domain
YPA_2880	SSF47384	Homodimeric domain of signal transducing histidine kinase
YPA_2880	SSF52172	CheY-like
YPA_2880	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
YPA_2881	SSF50156	PDZ domain-like
YPA_2881	SSF50494	Trypsin-like serine proteases
YPA_2882	SSF109604	HD-domain/PDEase-like
YPA_2883	SSF53167	Purine and uridine phosphorylases
YPA_2884	SSF53807	"Helical backbone" metal receptor
YPA_2887	SSF89360	HesB-like domain
YPA_2888	SSF81340	Clc chloride channel
YPA_2889	SSF53383	PLP-dependent transferases
YPA_2890	SSF81345	ABC transporter involved in vitamin B12 uptake, BtuC
YPA_2891	SSF53807	"Helical backbone" metal receptor
YPA_2892	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPA_2893	SSF53955	Lysozyme-like
YPA_2893	SSF56601	beta-lactamase/transpeptidase-like
YPA_2894	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPA_2895	SSF55144	LigT-like
YPA_2898	SSF109635	DnaK suppressor protein DksA, alpha-hairpin domain
YPA_2898	SSF57716	Glucocorticoid receptor-like (DNA-binding domain)
YPA_2899	SSF52374	Nucleotidylyl transferase
YPA_2900	SSF81301	Nucleotidyltransferase
YPA_2900	SSF81891	Poly A polymerase C-terminal region-like
YPA_2901	SSF55083	6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase, HPPK
YPA_2902	SSF51621	Phosphoenolpyruvate/pyruvate domain
YPA_2903	SSF52374	Nucleotidylyl transferase
YPA_2904	SSF50692	ADC-like
YPA_2905	SSF88713	Glycoside hydrolase/deacetylase
YPA_2908	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPA_2909	SSF53056	beta-carbonic anhydrase, cab
YPA_2910	SSF53271	PRTase-like
YPA_2911	SSF49503	Cupredoxins
YPA_2913	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
YPA_2914	SSF56276	S-adenosylmethionine decarboxylase
YPA_2915	SSF103481	Multidrug resistance efflux transporter EmrE
YPA_2917	SSF52016	LeuD/IlvD-like
YPA_2917	SSF53732	Aconitase iron-sulfur domain
YPA_2917	SSF74778	Aconitase B, N-terminal domain
YPA_2918	SSF143422	Transposase IS200-like
YPA_2919	SSF51905	FAD/NAD(P)-binding domain
YPA_2919	SSF55424	FAD/NAD-linked reductases, dimerisation (C-terminal) domain
YPA_2920	SSF47005	Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex
YPA_2920	SSF51230	Single hybrid motif
YPA_2920	SSF52777	CoA-dependent acyltransferases
YPA_2921	SSF52518	Thiamin diphosphate-binding fold (THDP-binding)
YPA_2921	SSF52922	TK C-terminal domain-like
YPA_2922	SSF46785	"Winged helix" DNA-binding domain
YPA_2922	SSF48008	GntR ligand-binding domain-like
YPA_2925	SSF55846	N-acetylmuramoyl-L-alanine amidase-like
YPA_2926	SSF51690	Nicotinate/Quinolinate PRTase C-terminal domain-like
YPA_2926	SSF54675	Nicotinate/Quinolinate PRTase N-terminal domain-like
YPA_2927	SSF54523	Pili subunits
YPA_2928	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPA_2930	SSF51412	Inosine monophosphate dehydrogenase (IMPDH)
YPA_2931	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPA_2932	SSF160950	YacF-like
YPA_2933	SSF57716	Glucocorticoid receptor-like (DNA-binding domain)
YPA_2934	SSF143422	Transposase IS200-like
YPA_2935	SSF46689	Homeodomain-like
YPA_2935	SSF53098	Ribonuclease H-like
YPA_2936	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPA_2937	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
YPA_2939	SSF56349	DNA breaking-rejoining enzymes
YPA_2942	SSF52949	Macro domain-like
YPA_2942	SSF53187	Zn-dependent exopeptidases
YPA_2943	SSF102400	DNA polymerase III chi subunit
YPA_2944	SSF46589	tRNA-binding arm
YPA_2944	SSF47323	Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
YPA_2944	SSF50677	ValRS/IleRS/LeuRS editing domain
YPA_2944	SSF52374	Nucleotidylyl transferase
YPA_2945	SSF55729	Acyl-CoA N-acyltransferases (Nat)
YPA_2946	SSF89946	Hypothetical protein VC0424
YPA_2947	SSF53671	Aspartate/ornithine carbamoyltransferase
YPA_2948	SSF53671	Aspartate/ornithine carbamoyltransferase
YPA_2949	SSF51197	Clavaminate synthase-like
YPA_2950	SSF53850	Periplasmic binding protein-like II
YPA_2951	SSF53850	Periplasmic binding protein-like II
YPA_2952	SSF161098	MetI-like
YPA_2953	SSF161098	MetI-like
YPA_2954	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPA_2955	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPA_2956	SSF51998	PFL-like glycyl radical enzymes
YPA_2957	SSF102114	Radical SAM enzymes
YPA_2958	SSF46785	"Winged helix" DNA-binding domain
YPA_2958	SSF64288	Chorismate lyase-like
YPA_2960	SSF159709	PhnH-like
YPA_2963	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPA_2964	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPA_2965	SSF51338	Composite domain of metallo-dependent hydrolases
YPA_2965	SSF51556	Metallo-dependent hydrolases
YPA_2966	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPA_2967	SSF56281	Metallo-hydrolase/oxidoreductase
YPA_2968	SSF51735	NAD(P)-binding Rossmann-fold domains
YPA_2969	SSF50475	FMN-binding split barrel
YPA_2970	SSF48230	Chondroitin AC/alginate lyase
YPA_2971	SSF50331	MOP-like
YPA_2971	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPA_2972	SSF161098	MetI-like
YPA_2973	SSF161098	MetI-like
YPA_2974	SSF53850	Periplasmic binding protein-like II
YPA_2975	SSF48230	Chondroitin AC/alginate lyase
YPA_2976	SSF48230	Chondroitin AC/alginate lyase
YPA_2977	SSF82771	GIY-YIG endonuclease
YPA_2978	SSF55729	Acyl-CoA N-acyltransferases (Nat)
YPA_2979	SSF55718	SCP-like
YPA_2981	SSF51391	Thiamin phosphate synthase
YPA_2983	SSF56954	Outer membrane efflux proteins (OEP)
YPA_2984	SSF82693	Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains
YPA_2984	SSF82714	Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains
YPA_2984	SSF82866	Multidrug efflux transporter AcrB transmembrane domain
YPA_2985	SSF111369	HlyD-like secretion proteins
YPA_2986	SSF51679	Bacterial luciferase-like
YPA_2987	SSF47413	lambda repressor-like DNA-binding domains
YPA_2990	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPA_2991	SSF48452	TPR-like
YPA_2992	SSF46915	Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3
YPA_2992	SSF50249	Nucleic acid-binding proteins
YPA_2992	SSF54211	Ribosomal protein S5 domain 2-like
YPA_2992	SSF54791	Eukaryotic type KH-domain (KH-domain type I)
YPA_2992	SSF55666	Ribonuclease PH domain 2-like
YPA_2993	SSF53098	Ribonuclease H-like
YPA_2994	SSF46689	Homeodomain-like
YPA_2994	SSF48295	TrpR-like
YPA_2995	SSF51735	NAD(P)-binding Rossmann-fold domains
YPA_2996	SSF53686	Tryptophan synthase beta subunit-like PLP-dependent enzymes
YPA_2998	SSF82171	DPP6 N-terminal domain-like
YPA_3000	SSF49764	HSP20-like chaperones
YPA_3001	SSF49764	HSP20-like chaperones
YPA_3002	SSF116726	TrkA C-terminal domain-like
YPA_3003	SSF53383	PLP-dependent transferases
YPA_3005	SSF51445	(Trans)glycosidases
YPA_3006	SSF51735	NAD(P)-binding Rossmann-fold domains
YPA_3006	SSF52283	Formate/glycerate dehydrogenase catalytic domain-like
YPA_3007	SSF46785	"Winged helix" DNA-binding domain
YPA_3008	SSF103088	OmpA-like
YPA_3009	SSF55729	Acyl-CoA N-acyltransferases (Nat)
YPA_3010	SSF48150	DNA-glycosylase
YPA_3011	SSF55681	Class II aaRS and biotin synthetases
YPA_3012	SSF109604	HD-domain/PDEase-like
YPA_3014	SSF52794	PTS system IIB component-like
YPA_3014	SSF55804	Phoshotransferase/anion transport protein
YPA_3015	SSF48179	6-phosphogluconate dehydrogenase C-terminal domain-like
YPA_3015	SSF51735	NAD(P)-binding Rossmann-fold domains
YPA_3016	SSF158668	MtlR-like
YPA_3020	SSF58104	Methyl-accepting chemotaxis protein (MCP) signaling domain
YPA_3021	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPA_3022	SSF46689	Homeodomain-like
YPA_3022	SSF53098	Ribonuclease H-like
YPA_3023	SSF58104	Methyl-accepting chemotaxis protein (MCP) signaling domain
YPA_3024	SSF46609	Fe,Mn superoxide dismutase (SOD), N-terminal domain
YPA_3024	SSF54719	Fe,Mn superoxide dismutase (SOD), C-terminal domain
YPA_3025	SSF53927	Cytidine deaminase-like
YPA_3026	SSF53706	Formate dehydrogenase/DMSO reductase, domains 1-3
YPA_3027	SSF50692	ADC-like
YPA_3027	SSF53706	Formate dehydrogenase/DMSO reductase, domains 1-3
YPA_3028	SSF54862	4Fe-4S ferredoxins
YPA_3029	SSF81342	Transmembrane di-heme cytochromes
YPA_3030	SSF144020	FdhE-like
YPA_3031	SSF53383	PLP-dependent transferases
YPA_3032	SSF46785	"Winged helix" DNA-binding domain
YPA_3032	SSF50447	Translation proteins
YPA_3032	SSF50465	EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
YPA_3032	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPA_3037	SSF103473	MFS general substrate transporter
YPA_3038	SSF53098	Ribonuclease H-like
YPA_3039	SSF46689	Homeodomain-like
YPA_3039	SSF48295	TrpR-like
YPA_3043	SSF103088	OmpA-like
YPA_3045	SSF88659	Sigma3 and sigma4 domains of RNA polymerase sigma factors
YPA_3045	SSF88946	Sigma2 domain of RNA polymerase sigma factors
YPA_3047	SSF51161	Trimeric LpxA-like enzymes
YPA_3049	SSF101116	Flagellar export chaperone FliS
YPA_3051	SSF64518	Phase 1 flagellin
YPA_3052	SSF64518	Phase 1 flagellin
YPA_3053	SSF64518	Phase 1 flagellin
YPA_3054	SSF46894	C-terminal effector domain of the bipartite response regulators
YPA_3057	SSF64518	Phase 1 flagellin
YPA_3058	SSF64518	Phase 1 flagellin
YPA_3062	SSF117143	Flagellar hook protein flgE
YPA_3063	SSF117143	Flagellar hook protein flgE
YPA_3064	SSF117143	Flagellar hook protein flgE
YPA_3069	SSF101498	Anti-sigma factor FlgM
YPA_3070	SSF140566	FlgN-like
YPA_3072	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPA_3074	SSF48029	FliG
YPA_3075	SSF46689	Homeodomain-like
YPA_3075	SSF53098	Ribonuclease H-like
YPA_3076	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPA_3077	SSF48029	FliG
YPA_3080	SSF46689	Homeodomain-like
YPA_3080	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPA_3082	SSF101801	Surface presentation of antigens (SPOA)
YPA_3083	SSF101801	Surface presentation of antigens (SPOA)
YPA_3087	SSF160544	EscU C-terminal domain-like
YPA_3092	SSF53807	"Helical backbone" metal receptor
YPA_3093	SSF49401	Bacterial adhesins
YPA_3094	SSF49354	PapD-like
YPA_3094	SSF49584	Periplasmic chaperone C-domain
YPA_3095	SSF141729	FimD N-terminal domain-like
YPA_3096	SSF143422	Transposase IS200-like
YPA_3101	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPA_3102	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPA_3105	SSF48452	TPR-like
YPA_3108	SSF53300	vWA-like
YPA_3111	SSF53383	PLP-dependent transferases
YPA_3113	SSF46689	Homeodomain-like
YPA_3114	SSF56796	Dehydroquinate synthase-like
YPA_3115	SSF51430	NAD(P)-linked oxidoreductase
YPA_3117	SSF102114	Radical SAM enzymes
YPA_3118	SSF49503	Cupredoxins
YPA_3119	SSF69593	Glycerol-3-phosphate (1)-acyltransferase
YPA_3120	SSF101904	GyrA/ParC C-terminal domain-like
YPA_3120	SSF56719	Type II DNA topoisomerase
YPA_3121	SSF52218	Flavoproteins
YPA_3122	SSF46785	"Winged helix" DNA-binding domain
YPA_3122	SSF53850	Periplasmic binding protein-like II
YPA_3123	SSF54211	Ribosomal protein S5 domain 2-like
YPA_3123	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
YPA_3123	SSF56719	Type II DNA topoisomerase
YPA_3124	SSF53474	alpha/beta-Hydrolases
YPA_3125	SSF56300	Metallo-dependent phosphatases
YPA_3126	SSF56300	Metallo-dependent phosphatases
YPA_3128	SSF55811	Nudix
YPA_3129	SSF56954	Outer membrane efflux proteins (OEP)
YPA_3131	SSF52440	PreATP-grasp domain
YPA_3131	SSF56059	Glutathione synthetase ATP-binding domain-like
YPA_3132	SSF53213	LigB-like
YPA_3133	SSF55821	YrdC/RibB
YPA_3136	SSF52374	Nucleotidylyl transferase
YPA_3136	SSF53613	Ribokinase-like
YPA_3137	SSF81301	Nucleotidyltransferase
YPA_3137	SSF81593	Nucleotidyltransferase substrate binding subunit/domain
YPA_3138	SSF55154	CYTH-like phosphatases
YPA_3140	SSF81301	Nucleotidyltransferase
YPA_3140	SSF81891	Poly A polymerase C-terminal region-like
YPA_3142	SSF55620	Tetrahydrobiopterin biosynthesis enzymes-like
YPA_3144	SSF53067	Actin-like ATPase domain
YPA_3146	SSF117023	DNA primase DnaG, C-terminal domain
YPA_3146	SSF56731	DNA primase core
YPA_3146	SSF57783	Zinc beta-ribbon
YPA_3147	SSF88659	Sigma3 and sigma4 domains of RNA polymerase sigma factors
YPA_3147	SSF88946	Sigma2 domain of RNA polymerase sigma factors
YPA_3151	SSF160631	SMI1/KNR4-like
YPA_3152	SSF160631	SMI1/KNR4-like
YPA_3153	SSF54060	His-Me finger endonucleases
YPA_3154	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPA_3155	SSF46689	Homeodomain-like
YPA_3155	SSF53098	Ribonuclease H-like
YPA_3157	SSF140931	Fic-like
YPA_3159	SSF46785	"Winged helix" DNA-binding domain
YPA_3159	SSF53850	Periplasmic binding protein-like II
YPA_3160	SSF52833	Thioredoxin-like
YPA_3161	SSF54909	Dimeric alpha+beta barrel
YPA_3162	SSF55298	YjgF-like
YPA_3163	SSF55298	YjgF-like
YPA_3166	SSF55961	Bet v1-like
YPA_3168	SSF53383	PLP-dependent transferases
YPA_3171	SSF111369	HlyD-like secretion proteins
YPA_3173	SSF56954	Outer membrane efflux proteins (OEP)
YPA_3174	SSF51445	(Trans)glycosidases
YPA_3174	SSF52279	Beta-D-glucan exohydrolase, C-terminal domain
YPA_3176	SSF161098	MetI-like
YPA_3177	SSF161098	MetI-like
YPA_3178	SSF53850	Periplasmic binding protein-like II
YPA_3179	SSF47413	lambda repressor-like DNA-binding domains
YPA_3179	SSF53822	Periplasmic binding protein-like I
YPA_3180	SSF48208	Six-hairpin glycosidases
YPA_3181	SSF50331	MOP-like
YPA_3181	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPA_3184	SSF103515	Autotransporter
YPA_3190	SSF51126	Pectin lyase-like
YPA_3192	SSF53300	vWA-like
YPA_3194	SSF53300	vWA-like
YPA_3195	SSF53300	vWA-like
YPA_3196	SSF81606	PP2C-like
YPA_3197	SSF56112	Protein kinase-like (PK-like)
YPA_3199	SSF51395	FMN-linked oxidoreductases
YPA_3199	SSF51905	FAD/NAD(P)-binding domain
YPA_3199	SSF51971	Nucleotide-binding domain
YPA_3200	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
YPA_3201	SSF103515	Autotransporter
YPA_3201	SSF51126	Pectin lyase-like
YPA_3203	SSF51735	NAD(P)-binding Rossmann-fold domains
YPA_3203	SSF55347	Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
YPA_3204	SSF118215	Proton glutamate symport protein
YPA_3205	SSF143422	Transposase IS200-like
YPA_3208	SSF48179	6-phosphogluconate dehydrogenase C-terminal domain-like
YPA_3208	SSF51735	NAD(P)-binding Rossmann-fold domains
YPA_3209	SSF51735	NAD(P)-binding Rossmann-fold domains
YPA_3210	SSF51556	Metallo-dependent hydrolases
YPA_3211	SSF103473	MFS general substrate transporter
YPA_3212	SSF46785	"Winged helix" DNA-binding domain
YPA_3212	SSF48008	GntR ligand-binding domain-like
YPA_3223	SSF46689	Homeodomain-like
YPA_3223	SSF53098	Ribonuclease H-like
YPA_3224	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPA_3225	SSF51161	Trimeric LpxA-like enzymes
YPA_3226	SSF51735	NAD(P)-binding Rossmann-fold domains
YPA_3226	SSF53223	Aminoacid dehydrogenase-like, N-terminal domain
YPA_3227	SSF55821	YrdC/RibB
YPA_3228	SSF57783	Zinc beta-ribbon
YPA_3230	SSF102405	MCP/YpsA-like
YPA_3231	SSF56420	Peptide deformylase
YPA_3232	SSF50486	FMT C-terminal domain-like
YPA_3232	SSF53328	Formyltransferase
YPA_3233	SSF48013	NusB-like
YPA_3233	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
YPA_3234	SSF116726	TrkA C-terminal domain-like
YPA_3234	SSF51735	NAD(P)-binding Rossmann-fold domains
YPA_3235	SSF81330	Gated mechanosensitive channel
YPA_3237	SSF46955	Putative DNA-binding domain
YPA_3238	SSF64263	Prokaryotic ribosomal protein L17
YPA_3239	SSF47789	C-terminal domain of RNA polymerase alpha subunit
YPA_3239	SSF55257	RBP11-like subunits of RNA polymerase
YPA_3239	SSF56553	Insert subdomain of RNA polymerase alpha subunit
YPA_3240	SSF55174	Alpha-L RNA-binding motif
YPA_3241	SSF53137	Translational machinery components
YPA_3242	SSF46946	S13-like H2TH domain
YPA_3243	SSF103491	Preprotein translocase SecY subunit
YPA_3244	SSF52080	Ribosomal proteins L15p and L18e
YPA_3245	SSF55129	Ribosomal protein L30p/L7e
YPA_3246	SSF54211	Ribosomal protein S5 domain 2-like
YPA_3246	SSF54768	dsRNA-binding domain-like
YPA_3247	SSF53137	Translational machinery components
YPA_3248	SSF56053	Ribosomal protein L6
YPA_3249	SSF56047	Ribosomal protein S8
YPA_3250	SSF57716	Glucocorticoid receptor-like (DNA-binding domain)
YPA_3251	SSF55282	RL5-like
YPA_3252	SSF50104	Translation proteins SH3-like domain
YPA_3253	SSF50193	Ribosomal protein L14
YPA_3254	SSF50249	Nucleic acid-binding proteins
YPA_3255	SSF46561	Ribosomal protein L29 (L29p)
YPA_3256	SSF54686	Ribosomal protein L16p/L10e
YPA_3257	SSF54814	Prokaryotic type KH domain (KH-domain type II)
YPA_3257	SSF54821	Ribosomal protein S3 C-terminal domain
YPA_3258	SSF54843	Ribosomal protein L22
YPA_3259	SSF54570	Ribosomal protein S19
YPA_3260	SSF50104	Translation proteins SH3-like domain
YPA_3260	SSF50249	Nucleic acid-binding proteins
YPA_3261	SSF54189	Ribosomal proteins S24e, L23 and L15e
YPA_3262	SSF52166	Ribosomal protein L4
YPA_3263	SSF50447	Translation proteins
YPA_3264	SSF54999	Ribosomal protein S10
YPA_3265	SSF47240	Ferritin-like
YPA_3266	SSF46689	Homeodomain-like
YPA_3266	SSF53098	Ribonuclease H-like
YPA_3267	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPA_3268	SSF143422	Transposase IS200-like
YPA_3269	SSF50447	Translation proteins
YPA_3269	SSF50465	EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
YPA_3269	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPA_3270	SSF50447	Translation proteins
YPA_3270	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPA_3270	SSF54211	Ribosomal protein S5 domain 2-like
YPA_3270	SSF54980	EF-G C-terminal domain-like
YPA_3271	SSF47973	Ribosomal protein S7
YPA_3272	SSF50249	Nucleic acid-binding proteins
YPA_3273	SSF75169	DsrEFH-like
YPA_3274	SSF75169	DsrEFH-like
YPA_3275	SSF75169	DsrEFH-like
YPA_3277	SSF54534	FKBP-like
YPA_3279	SSF54534	FKBP-like
YPA_3281	SSF51735	NAD(P)-binding Rossmann-fold domains
YPA_3282	SSF52218	Flavoproteins
YPA_3283	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPA_3284	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPA_3285	SSF53448	Nucleotide-diphospho-sugar transferases
YPA_3286	SSF53756	UDP-Glycosyltransferase/glycogen phosphorylase
YPA_3287	SSF51197	Clavaminate synthase-like
YPA_3288	SSF161098	MetI-like
YPA_3289	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPA_3290	SSF53850	Periplasmic binding protein-like II
YPA_3292	SSF53474	alpha/beta-Hydrolases
YPA_3293	SSF118001	YehU-like
YPA_3294	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPA_3296	SSF82784	OsmC-like
YPA_3297	SSF46785	"Winged helix" DNA-binding domain
YPA_3297	SSF51206	cAMP-binding domain-like
YPA_3299	SSF53383	PLP-dependent transferases
YPA_3300	SSF52317	Class I glutamine amidotransferase-like
YPA_3301	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPA_3302	SSF50891	Cyclophilin-like
YPA_3303	SSF51735	NAD(P)-binding Rossmann-fold domains
YPA_3303	SSF56327	LDH C-terminal domain-like
YPA_3304	SSF47413	lambda repressor-like DNA-binding domains
YPA_3304	SSF53822	Periplasmic binding protein-like I
YPA_3305	SSF56935	Porins
YPA_3306	SSF103473	MFS general substrate transporter
YPA_3307	SSF51338	Composite domain of metallo-dependent hydrolases
YPA_3307	SSF51556	Metallo-dependent hydrolases
YPA_3308	SSF51905	FAD/NAD(P)-binding domain
YPA_3308	SSF55124	Nitrite/Sulfite reductase N-terminal domain-like
YPA_3308	SSF56014	Nitrite and sulphite reductase 4Fe-4S domain-like
YPA_3309	SSF50022	ISP domain
YPA_3311	SSF51735	NAD(P)-binding Rossmann-fold domains
YPA_3311	SSF53790	Tetrapyrrole methylase
YPA_3311	SSF75615	Siroheme synthase middle domains-like
YPA_3312	SSF52374	Nucleotidylyl transferase
YPA_3313	SSF56784	HAD-like
YPA_3314	SSF51366	Ribulose-phoshate binding barrel
YPA_3315	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
YPA_3316	SSF110997	Sporulation related repeat
YPA_3317	SSF56796	Dehydroquinate synthase-like
YPA_3318	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPA_3324	SSF53067	Actin-like ATPase domain
YPA_3325	SSF53955	Lysozyme-like
YPA_3325	SSF56601	beta-lactamase/transpeptidase-like
YPA_3326	SSF55811	Nudix
YPA_3328	SSF56784	HAD-like
YPA_3329	SSF55174	Alpha-L RNA-binding motif
YPA_3330	SSF118352	HSP33 redox switch-like
YPA_3330	SSF64397	Hsp33 domain
YPA_3331	SSF53795	PEP carboxykinase-like
YPA_3331	SSF68923	PEP carboxykinase N-terminal domain
YPA_3332	SSF47384	Homodimeric domain of signal transducing histidine kinase
YPA_3332	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
YPA_3333	SSF46894	C-terminal effector domain of the bipartite response regulators
YPA_3333	SSF52172	CheY-like
YPA_3334	SSF46557	GreA transcript cleavage protein, N-terminal domain
YPA_3334	SSF54534	FKBP-like
YPA_3335	SSF158832	Tex N-terminal region-like
YPA_3335	SSF47781	RuvA domain 2-like
YPA_3335	SSF50249	Nucleic acid-binding proteins
YPA_3335	SSF53098	Ribonuclease H-like
YPA_3336	SSF50037	C-terminal domain of transcriptional repressors
YPA_3337	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPA_3338	SSF46785	"Winged helix" DNA-binding domain
YPA_3339	SSF159871	YdgH-like
YPA_3340	SSF53474	alpha/beta-Hydrolases
YPA_3341	SSF53271	PRTase-like
YPA_3342	SSF117916	Fe-S cluster assembly (FSCA) domain-like
YPA_3342	SSF89360	HesB-like domain
YPA_3343	SSF51445	(Trans)glycosidases
YPA_3344	SSF53756	UDP-Glycosyltransferase/glycogen phosphorylase
YPA_3345	SSF53756	UDP-Glycosyltransferase/glycogen phosphorylase
YPA_3346	SSF46894	C-terminal effector domain of the bipartite response regulators
YPA_3346	SSF48452	TPR-like
YPA_3346	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPA_3347	SSF52821	Rhodanese/Cell cycle control phosphatase
YPA_3348	SSF144091	Rhomboid-like
YPA_3349	SSF100950	NagB/RpiA/CoA transferase-like
YPA_3349	SSF46785	"Winged helix" DNA-binding domain
YPA_3350	SSF46689	Homeodomain-like
YPA_3350	SSF48295	TrpR-like
YPA_3351	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPA_3352	SSF46689	Homeodomain-like
YPA_3352	SSF53098	Ribonuclease H-like
YPA_3353	SSF53098	Ribonuclease H-like
YPA_3354	SSF141868	EAL domain-like
YPA_3354	SSF55073	Nucleotide cyclase
YPA_3354	SSF55785	PYP-like sensor domain (PAS domain)
YPA_3356	SSF111369	HlyD-like secretion proteins
YPA_3357	SSF82693	Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains
YPA_3357	SSF82714	Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains
YPA_3357	SSF82866	Multidrug efflux transporter AcrB transmembrane domain
YPA_3360	SSF103515	Autotransporter
YPA_3360	SSF51126	Pectin lyase-like
YPA_3361	SSF52058	L domain-like
YPA_3362	SSF52058	L domain-like
YPA_3363	SSF143422	Transposase IS200-like
YPA_3364	SSF52058	L domain-like
YPA_3367	SSF53187	Zn-dependent exopeptidases
YPA_3367	SSF55031	Bacterial exopeptidase dimerisation domain
YPA_3368	SSF56935	Porins
YPA_3369	SSF47336	ACP-like
YPA_3369	SSF53901	Thiolase-like
YPA_3369	SSF56801	Acetyl-CoA synthetase-like
YPA_3370	SSF46689	Homeodomain-like
YPA_3370	SSF53098	Ribonuclease H-like
YPA_3371	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPA_3372	SSF47336	ACP-like
YPA_3372	SSF52777	CoA-dependent acyltransferases
YPA_3372	SSF56801	Acetyl-CoA synthetase-like
YPA_3373	SSF47336	ACP-like
YPA_3373	SSF56801	Acetyl-CoA synthetase-like
YPA_3374	SSF47336	ACP-like
YPA_3374	SSF52777	CoA-dependent acyltransferases
YPA_3374	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
YPA_3374	SSF53474	alpha/beta-Hydrolases
YPA_3374	SSF56801	Acetyl-CoA synthetase-like
YPA_3375	SSF51735	NAD(P)-binding Rossmann-fold domains
YPA_3376	SSF51735	NAD(P)-binding Rossmann-fold domains
YPA_3377	SSF53474	alpha/beta-Hydrolases
YPA_3378	SSF103473	MFS general substrate transporter
YPA_3379	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPA_3379	SSF90123	ABC transporter transmembrane region
YPA_3380	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPA_3380	SSF90123	ABC transporter transmembrane region
YPA_3385	SSF103515	Autotransporter
YPA_3385	SSF51126	Pectin lyase-like
YPA_3386	SSF69255	gp5 N-terminal domain-like
YPA_3386	SSF69279	Phage tail proteins
YPA_3386	SSF69349	Phage fibre proteins
YPA_3387	SSF48452	TPR-like
YPA_3392	SSF47413	lambda repressor-like DNA-binding domains
YPA_3392	SSF53822	Periplasmic binding protein-like I
YPA_3393	SSF51445	(Trans)glycosidases
YPA_3394	SSF53098	Ribonuclease H-like
YPA_3395	SSF46689	Homeodomain-like
YPA_3395	SSF48295	TrpR-like
YPA_3398	SSF49879	SMAD/FHA domain
YPA_3402	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPA_3402	SSF81923	Double Clp-N motif
YPA_3403	SSF46689	Homeodomain-like
YPA_3406	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPA_3409	SSF69255	gp5 N-terminal domain-like
YPA_3409	SSF69279	Phage tail proteins
YPA_3409	SSF69349	Phage fibre proteins
YPA_3410	SSF55724	Mog1p/PsbP-like
YPA_3413	SSF160631	SMI1/KNR4-like
YPA_3416	SSF47413	lambda repressor-like DNA-binding domains
YPA_3418	SSF69255	gp5 N-terminal domain-like
YPA_3418	SSF69279	Phage tail proteins
YPA_3418	SSF69349	Phage fibre proteins
YPA_3419	SSF55724	Mog1p/PsbP-like
YPA_3422	SSF51658	Xylose isomerase-like
YPA_3424	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPA_3425	SSF46689	Homeodomain-like
YPA_3425	SSF53098	Ribonuclease H-like
YPA_3426	SSF55729	Acyl-CoA N-acyltransferases (Nat)
YPA_3427	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPA_3428	SSF46785	"Winged helix" DNA-binding domain
YPA_3428	SSF50037	C-terminal domain of transcriptional repressors
YPA_3428	SSF55681	Class II aaRS and biotin synthetases
YPA_3429	SSF56176	FAD-binding/transporter-associated domain-like
YPA_3429	SSF56194	Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase, MurB, C-terminal domain
YPA_3430	SSF52218	Flavoproteins
YPA_3432	SSF54211	Ribosomal protein S5 domain 2-like
YPA_3432	SSF54980	EF-G C-terminal domain-like
YPA_3433	SSF143422	Transposase IS200-like
YPA_3434	SSF54211	Ribosomal protein S5 domain 2-like
YPA_3435	SSF55920	Creatinase/aminopeptidase
YPA_3436	SSF48179	6-phosphogluconate dehydrogenase C-terminal domain-like
YPA_3436	SSF51735	NAD(P)-binding Rossmann-fold domains
YPA_3436	SSF52096	ClpP/crotonase
YPA_3437	SSF53901	Thiolase-like
YPA_3438	SSF52343	Ferredoxin reductase-like, C-terminal NADP-linked domain
YPA_3438	SSF63380	Riboflavin synthase domain-like
YPA_3439	SSF143968	UbiD C-terminal domain-like
YPA_3439	SSF50475	FMN-binding split barrel
YPA_3440	SSF82679	N-utilization substance G protein NusG, N-terminal domain
YPA_3441	SSF51569	Aldolase
YPA_3442	SSF51556	Metallo-dependent hydrolases
YPA_3443	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPA_3444	SSF46689	Homeodomain-like
YPA_3444	SSF53098	Ribonuclease H-like
YPA_3446	SSF51230	Single hybrid motif
YPA_3447	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPA_3447	SSF90123	ABC transporter transmembrane region
YPA_3448	SSF143422	Transposase IS200-like
YPA_3450	SSF81338	Aquaporin-like
YPA_3451	SSF53067	Actin-like ATPase domain
YPA_3452	SSF56655	Carbohydrate phosphatase
YPA_3453	SSF52343	Ferredoxin reductase-like, C-terminal NADP-linked domain
YPA_3453	SSF63380	Riboflavin synthase domain-like
YPA_3456	SSF51351	Triosephosphate isomerase (TIM)
YPA_3457	SSF46785	"Winged helix" DNA-binding domain
YPA_3457	SSF53850	Periplasmic binding protein-like II
YPA_3458	SSF102588	LmbE-like
YPA_3459	SSF89562	RraA-like
YPA_3461	SSF53850	Periplasmic binding protein-like II
YPA_3462	SSF53850	Periplasmic binding protein-like II
YPA_3463	SSF53784	Phosphofructokinase
YPA_3464	SSF160240	Cation efflux protein cytoplasmic domain-like
YPA_3464	SSF161111	Cation efflux protein transmembrane domain-like
YPA_3467	SSF56349	DNA breaking-rejoining enzymes
YPA_3469	SSF52172	CheY-like
YPA_3470	SSF47384	Homodimeric domain of signal transducing histidine kinase
YPA_3470	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
YPA_3471	SSF46689	Homeodomain-like
YPA_3471	SSF46767	Methylated DNA-protein cysteine methyltransferase, C-terminal domain
YPA_3471	SSF53155	Methylated DNA-protein cysteine methyltransferase domain
YPA_3471	SSF57884	Ada DNA repair protein, N-terminal domain (N-Ada 10)
YPA_3472	SSF75217	alpha/beta knot
YPA_3473	SSF51161	Trimeric LpxA-like enzymes
YPA_3474	SSF48179	6-phosphogluconate dehydrogenase C-terminal domain-like
YPA_3474	SSF51735	NAD(P)-binding Rossmann-fold domains
YPA_3475	SSF54611	SecB-like
YPA_3476	SSF52833	Thioredoxin-like
YPA_3477	SSF52821	Rhodanese/Cell cycle control phosphatase
YPA_3478	SSF53649	Alkaline phosphatase-like
YPA_3478	SSF64158	2,3-Bisphosphoglycerate-independent phosphoglycerate mutase, substrate-binding domain
YPA_3479	SSF51261	Duplicated hybrid motif
YPA_3480	SSF88713	Glycoside hydrolase/deacetylase
YPA_3481	SSF88713	Glycoside hydrolase/deacetylase
YPA_3482	SSF50129	GroES-like
YPA_3482	SSF51735	NAD(P)-binding Rossmann-fold domains
YPA_3483	SSF53383	PLP-dependent transferases
YPA_3484	SSF51735	NAD(P)-binding Rossmann-fold domains
YPA_3485	SSF53756	UDP-Glycosyltransferase/glycogen phosphorylase
YPA_3486	SSF53756	UDP-Glycosyltransferase/glycogen phosphorylase
YPA_3487	SSF53756	UDP-Glycosyltransferase/glycogen phosphorylase
YPA_3488	SSF53448	Nucleotide-diphospho-sugar transferases
YPA_3489	SSF52374	Nucleotidylyl transferase
YPA_3490	SSF46946	S13-like H2TH domain
YPA_3490	SSF57716	Glucocorticoid receptor-like (DNA-binding domain)
YPA_3490	SSF81624	N-terminal domain of MutM-like DNA repair proteins
YPA_3491	SSF57829	Zn-binding ribosomal proteins
YPA_3492	SSF143800	L28p-like
YPA_3493	SSF47781	RuvA domain 2-like
YPA_3494	SSF102645	CoaB-like
YPA_3494	SSF52507	Homo-oligomeric flavin-containing Cys decarboxylases, HFCD
YPA_3495	SSF51283	dUTPase-like
YPA_3496	SSF46689	Homeodomain-like
YPA_3496	SSF48498	Tetracyclin repressor-like, C-terminal domain
YPA_3497	SSF53271	PRTase-like
YPA_3498	SSF54211	Ribosomal protein S5 domain 2-like
YPA_3498	SSF55666	Ribonuclease PH domain 2-like
YPA_3501	SSF47781	RuvA domain 2-like
YPA_3501	SSF50249	Nucleic acid-binding proteins
YPA_3501	SSF56091	DNA ligase/mRNA capping enzyme, catalytic domain
YPA_3502	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPA_3503	SSF63562	RPB6/omega subunit-like
YPA_3504	SSF109604	HD-domain/PDEase-like
YPA_3504	SSF55021	ACT-like
YPA_3504	SSF81271	TGS-like
YPA_3504	SSF81301	Nucleotidyltransferase
YPA_3505	SSF75217	alpha/beta knot
YPA_3506	SSF50249	Nucleic acid-binding proteins
YPA_3506	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPA_3510	SSF54637	Thioesterase/thiol ester dehydrase-isomerase
YPA_3510	SSF55729	Acyl-CoA N-acyltransferases (Nat)
YPA_3511	SSF46689	Homeodomain-like
YPA_3511	SSF53098	Ribonuclease H-like
YPA_3512	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPA_3513	SSF69500	DTD-like
YPA_3515	SSF56784	HAD-like
YPA_3516	SSF50447	Translation proteins
YPA_3516	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPA_3516	SSF54980	EF-G C-terminal domain-like
YPA_3517	SSF54368	Glutamine synthetase, N-terminal domain
YPA_3517	SSF55931	Glutamine synthetase/guanido kinase
YPA_3518	SSF143422	Transposase IS200-like
YPA_3519	SSF47384	Homodimeric domain of signal transducing histidine kinase
YPA_3519	SSF55785	PYP-like sensor domain (PAS domain)
YPA_3519	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
YPA_3520	SSF46689	Homeodomain-like
YPA_3520	SSF52172	CheY-like
YPA_3520	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPA_3521	SSF102114	Radical SAM enzymes
YPA_3523	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPA_3524	SSF143422	Transposase IS200-like
YPA_3525	SSF47807	5' to 3' exonuclease, C-terminal subdomain
YPA_3525	SSF53098	Ribonuclease H-like
YPA_3525	SSF56672	DNA/RNA polymerases
YPA_3525	SSF88723	PIN domain-like
YPA_3526	SSF52833	Thioredoxin-like
YPA_3527	SSF56112	Protein kinase-like (PK-like)
YPA_3529	SSF53448	Nucleotide-diphospho-sugar transferases
YPA_3530	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPA_3533	SSF46689	Homeodomain-like
YPA_3533	SSF53098	Ribonuclease H-like
YPA_3534	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPA_3536	SSF55811	Nudix
YPA_3537	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPA_3537	SSF81767	Pre-protein crosslinking domain of SecA
YPA_3537	SSF81886	Helical scaffold and wing domains of SecA
YPA_3540	SSF54211	Ribosomal protein S5 domain 2-like
YPA_3541	SSF52490	Tubulin nucleotide-binding domain-like
YPA_3541	SSF55307	Tubulin C-terminal domain-like
YPA_3542	SSF53067	Actin-like ATPase domain
YPA_3544	SSF52440	PreATP-grasp domain
YPA_3544	SSF56059	Glutathione synthetase ATP-binding domain-like
YPA_3545	SSF51984	MurCD N-terminal domain
YPA_3545	SSF53244	MurD-like peptide ligases, peptide-binding domain
YPA_3545	SSF53623	MurD-like peptide ligases, catalytic domain
YPA_3546	SSF53756	UDP-Glycosyltransferase/glycogen phosphorylase
YPA_3548	SSF51984	MurCD N-terminal domain
YPA_3548	SSF53244	MurD-like peptide ligases, peptide-binding domain
YPA_3548	SSF53623	MurD-like peptide ligases, catalytic domain
YPA_3550	SSF53244	MurD-like peptide ligases, peptide-binding domain
YPA_3550	SSF53623	MurD-like peptide ligases, catalytic domain
YPA_3550	SSF63418	MurE/MurF N-terminal domain
YPA_3551	SSF53244	MurD-like peptide ligases, peptide-binding domain
YPA_3551	SSF53623	MurD-like peptide ligases, catalytic domain
YPA_3551	SSF63418	MurE/MurF N-terminal domain
YPA_3552	SSF56519	Penicillin binding protein dimerisation domain
YPA_3552	SSF56601	beta-lactamase/transpeptidase-like
YPA_3554	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
YPA_3554	SSF81799	Putative methyltransferase TM0872, insert domain
YPA_3555	SSF89447	AbrB/MazE/MraZ-like
YPA_3557	SSF47413	lambda repressor-like DNA-binding domains
YPA_3557	SSF53822	Periplasmic binding protein-like I
YPA_3558	SSF143422	Transposase IS200-like
YPA_3559	SSF55021	ACT-like
YPA_3560	SSF52467	DHS-like NAD/FAD-binding domain
YPA_3560	SSF52518	Thiamin diphosphate-binding fold (THDP-binding)
YPA_3561	SSF56801	Acetyl-CoA synthetase-like
YPA_3562	SSF46785	"Winged helix" DNA-binding domain
YPA_3562	SSF53850	Periplasmic binding protein-like II
YPA_3563	SSF143422	Transposase IS200-like
YPA_3564	SSF110921	2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain
YPA_3564	SSF51569	Aldolase
YPA_3565	SSF53659	Isocitrate/Isopropylmalate dehydrogenase-like
YPA_3566	SSF53732	Aconitase iron-sulfur domain
YPA_3567	SSF52016	LeuD/IlvD-like
YPA_3568	SSF103473	MFS general substrate transporter
YPA_3569	SSF46689	Homeodomain-like
YPA_3569	SSF53098	Ribonuclease H-like
YPA_3570	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPA_3571	SSF103473	MFS general substrate transporter
YPA_3572	SSF46785	"Winged helix" DNA-binding domain
YPA_3572	SSF53850	Periplasmic binding protein-like II
YPA_3573	SSF53850	Periplasmic binding protein-like II
YPA_3574	SSF161098	MetI-like
YPA_3575	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPA_3577	SSF53098	Ribonuclease H-like
YPA_3577	SSF56672	DNA/RNA polymerases
YPA_3578	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPA_3580	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPA_3581	SSF103088	OmpA-like
YPA_3586	SSF141571	Pentapeptide repeat-like
YPA_3587	SSF141571	Pentapeptide repeat-like
YPA_3589	SSF69255	gp5 N-terminal domain-like
YPA_3589	SSF69279	Phage tail proteins
YPA_3589	SSF69349	Phage fibre proteins
YPA_3590	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPA_3590	SSF81923	Double Clp-N motif
YPA_3594	SSF141452	Hcp1-like
YPA_3596	SSF46689	Homeodomain-like
YPA_3596	SSF53098	Ribonuclease H-like
YPA_3597	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPA_3599	SSF53098	Ribonuclease H-like
YPA_3600	SSF46689	Homeodomain-like
YPA_3601	SSF52335	Methylglyoxal synthase-like
YPA_3601	SSF53927	Cytidine deaminase-like
YPA_3602	SSF51246	Rudiment single hybrid motif
YPA_3602	SSF52440	PreATP-grasp domain
YPA_3602	SSF56059	Glutathione synthetase ATP-binding domain-like
YPA_3604	SSF47729	IHF-like DNA-binding proteins
YPA_3607	SSF51726	UROD/MetE-like
YPA_3609	SSF55811	Nudix
YPA_3612	SSF51391	Thiamin phosphate synthase
YPA_3613	SSF69572	Activating enzymes of the ubiquitin-like proteins
YPA_3614	SSF54285	MoaD/ThiS
YPA_3615	SSF110399	ThiG-like
YPA_3616	SSF102114	Radical SAM enzymes
YPA_3617	SSF143422	Transposase IS200-like
YPA_3618	SSF64484	beta and beta-prime subunits of DNA dependent RNA-polymerase
YPA_3619	SSF64484	beta and beta-prime subunits of DNA dependent RNA-polymerase
YPA_3620	SSF48300	Ribosomal protein L7/12, oligomerisation (N-terminal) domain
YPA_3620	SSF54736	ClpS-like
YPA_3621	SSF160369	Ribosomal protein L10-like
YPA_3622	SSF56808	Ribosomal protein L1
YPA_3623	SSF46906	Ribosomal protein L11, C-terminal domain
YPA_3623	SSF54747	Ribosomal L11/L12e N-terminal domain
YPA_3624	SSF50104	Translation proteins SH3-like domain
YPA_3624	SSF82679	N-utilization substance G protein NusG, N-terminal domain
YPA_3626	SSF50447	Translation proteins
YPA_3626	SSF50465	EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
YPA_3626	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPA_3628	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPA_3629	SSF46689	Homeodomain-like
YPA_3629	SSF53098	Ribonuclease H-like
YPA_3631	SSF51735	NAD(P)-binding Rossmann-fold domains
YPA_3631	SSF55347	Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
YPA_3632	SSF46689	Homeodomain-like
YPA_3632	SSF51215	Regulatory protein AraC
YPA_3633	SSF102546	RbsD-like
YPA_3634	SSF53613	Ribokinase-like
YPA_3635	SSF51569	Aldolase
YPA_3636	SSF52218	Flavoproteins
YPA_3637	SSF53850	Periplasmic binding protein-like II
YPA_3638	SSF51679	Bacterial luciferase-like
YPA_3639	SSF161098	MetI-like
YPA_3640	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPA_3646	SSF53822	Periplasmic binding protein-like I
YPA_3647	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPA_3650	SSF53067	Actin-like ATPase domain
YPA_3651	SSF53697	SIS domain
YPA_3652	SSF47616	GST C-terminal domain-like
YPA_3652	SSF52833	Thioredoxin-like
YPA_3653	SSF63829	Calcium-dependent phosphotriesterase
YPA_3654	SSF46565	Chaperone J-domain
YPA_3655	SSF143422	Transposase IS200-like
YPA_3656	SSF50249	Nucleic acid-binding proteins
YPA_3657	SSF50249	Nucleic acid-binding proteins
YPA_3660	SSF56281	Metallo-hydrolase/oxidoreductase
YPA_3661	SSF48179	6-phosphogluconate dehydrogenase C-terminal domain-like
YPA_3661	SSF51735	NAD(P)-binding Rossmann-fold domains
YPA_3662	SSF69118	AhpD-like
YPA_3663	SSF103473	MFS general substrate transporter
YPA_3664	SSF46785	"Winged helix" DNA-binding domain
YPA_3664	SSF48008	GntR ligand-binding domain-like
YPA_3665	SSF160631	SMI1/KNR4-like
YPA_3666	SSF46689	Homeodomain-like
YPA_3667	SSF51395	FMN-linked oxidoreductases
YPA_3668	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
YPA_3671	SSF51246	Rudiment single hybrid motif
YPA_3671	SSF52440	PreATP-grasp domain
YPA_3671	SSF56059	Glutathione synthetase ATP-binding domain-like
YPA_3672	SSF51230	Single hybrid motif
YPA_3673	SSF52304	Type II 3-dehydroquinate dehydratase
YPA_3675	SSF56524	Oxidoreductase molybdopterin-binding domain
YPA_3676	SSF50129	GroES-like
YPA_3676	SSF51735	NAD(P)-binding Rossmann-fold domains
YPA_3677	SSF141868	EAL domain-like
YPA_3677	SSF55073	Nucleotide cyclase
YPA_3678	SSF53067	Actin-like ATPase domain
YPA_3681	SSF52972	ITPase-like
YPA_3682	SSF50249	Nucleic acid-binding proteins
YPA_3684	SSF56317	Carbon-nitrogen hydrolase
YPA_3685	SSF111283	Putative modulator of DNA gyrase, PmbA/TldD
YPA_3686	SSF52799	(Phosphotyrosine protein) phosphatases II
YPA_3687	SSF52799	(Phosphotyrosine protein) phosphatases II
YPA_3689	SSF55166	Hedgehog/DD-peptidase
YPA_3691	SSF69318	Integrin alpha N-terminal domain
YPA_3695	SSF46785	"Winged helix" DNA-binding domain
YPA_3696	SSF46785	"Winged helix" DNA-binding domain
YPA_3696	SSF53850	Periplasmic binding protein-like II
YPA_3698	SSF111369	HlyD-like secretion proteins
YPA_3700	SSF53720	ALDH-like
YPA_3701	SSF53720	ALDH-like
YPA_3702	SSF53933	Microbial ribonucleases
YPA_3703	SSF52038	Barstar-related
YPA_3704	SSF158710	PSPTO4464-like
YPA_3705	SSF111283	Putative modulator of DNA gyrase, PmbA/TldD
YPA_3707	SSF47175	Cytochromes
YPA_3708	SSF54534	FKBP-like
YPA_3709	SSF51011	Glycosyl hydrolase domain
YPA_3709	SSF51445	(Trans)glycosidases
YPA_3710	SSF55604	Glucose permease domain IIB
YPA_3711	SSF47413	lambda repressor-like DNA-binding domains
YPA_3711	SSF53822	Periplasmic binding protein-like I
YPA_3712	SSF69318	Integrin alpha N-terminal domain
YPA_3713	SSF55298	YjgF-like
YPA_3714	SSF54893	Aspartate carbamoyltransferase, Regulatory-chain, N-terminal domain
YPA_3714	SSF57825	Aspartate carbamoyltransferase, Regulatory-chain, C-terminal domain
YPA_3715	SSF53671	Aspartate/ornithine carbamoyltransferase
YPA_3716	SSF55594	HPr-like
YPA_3717	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPA_3718	SSF55804	Phoshotransferase/anion transport protein
YPA_3719	SSF69754	Ribosome binding protein Y (YfiA homologue)
YPA_3720	SSF69754	Ribosome binding protein Y (YfiA homologue)
YPA_3722	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPA_3725	SSF56784	HAD-like
YPA_3726	SSF53697	SIS domain
YPA_3728	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPA_3732	SSF52091	SpoIIaa-like
YPA_3733	SSF82657	BolA-like
YPA_3734	SSF55205	EPT/RTPC-like
YPA_3735	SSF50156	PDZ domain-like
YPA_3735	SSF50494	Trypsin-like serine proteases
YPA_3736	SSF143422	Transposase IS200-like
YPA_3737	SSF50156	PDZ domain-like
YPA_3737	SSF50494	Trypsin-like serine proteases
YPA_3739	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPA_3740	SSF52161	Ribosomal protein L13
YPA_3741	SSF54211	Ribosomal protein S5 domain 2-like
YPA_3742	SSF47616	GST C-terminal domain-like
YPA_3742	SSF52833	Thioredoxin-like
YPA_3743	SSF101738	SspB-like
YPA_3745	SSF46548	alpha-helical ferredoxin
YPA_3745	SSF51971	Nucleotide-binding domain
YPA_3746	SSF51395	FMN-linked oxidoreductases
YPA_3746	SSF56235	N-terminal nucleophile aminohydrolases (Ntn hydrolases)
YPA_3746	SSF69336	Alpha subunit of glutamate synthase, C-terminal domain
YPA_3747	SSF102114	Radical SAM enzymes
YPA_3748	SSF47226	Histidine-containing phosphotransfer domain, HPT domain
YPA_3748	SSF47384	Homodimeric domain of signal transducing histidine kinase
YPA_3748	SSF52172	CheY-like
YPA_3748	SSF55785	PYP-like sensor domain (PAS domain)
YPA_3748	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
YPA_3749	SSF52317	Class I glutamine amidotransferase-like
YPA_3750	SSF53955	Lysozyme-like
YPA_3752	SSF53697	SIS domain
YPA_3753	SSF52980	Restriction endonuclease-like
YPA_3754	SSF53822	Periplasmic binding protein-like I
YPA_3755	SSF53790	Tetrapyrrole methylase
YPA_3756	SSF51182	RmlC-like cupins
YPA_3757	SSF46785	"Winged helix" DNA-binding domain
YPA_3757	SSF53850	Periplasmic binding protein-like II
YPA_3758	SSF47616	GST C-terminal domain-like
YPA_3758	SSF52833	Thioredoxin-like
YPA_3759	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPA_3760	SSF46689	Homeodomain-like
YPA_3760	SSF53098	Ribonuclease H-like
YPA_3761	SSF46689	Homeodomain-like
YPA_3762	SSF53098	Ribonuclease H-like
YPA_3766	SSF51905	FAD/NAD(P)-binding domain
YPA_3766	SSF54373	FAD-linked reductases, C-terminal domain
YPA_3767	SSF53756	UDP-Glycosyltransferase/glycogen phosphorylase
YPA_3768	SSF53756	UDP-Glycosyltransferase/glycogen phosphorylase
YPA_3769	SSF51161	Trimeric LpxA-like enzymes
YPA_3769	SSF53448	Nucleotide-diphospho-sugar transferases
YPA_3770	SSF51011	Glycosyl hydrolase domain
YPA_3770	SSF51445	(Trans)glycosidases
YPA_3770	SSF81296	E set domains
YPA_3771	SSF51011	Glycosyl hydrolase domain
YPA_3771	SSF51445	(Trans)glycosidases
YPA_3771	SSF81296	E set domains
YPA_3772	SSF55781	GAF domain-like
YPA_3772	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
YPA_3773	SSF49373	Invasin/intimin cell-adhesion fragments
YPA_3777	SSF51735	NAD(P)-binding Rossmann-fold domains
YPA_3777	SSF55347	Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
YPA_3782	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPA_3784	SSF47413	lambda repressor-like DNA-binding domains
YPA_3784	SSF53822	Periplasmic binding protein-like I
YPA_3785	SSF51182	RmlC-like cupins
YPA_3786	SSF46894	C-terminal effector domain of the bipartite response regulators
YPA_3786	SSF52172	CheY-like
YPA_3787	SSF53613	Ribokinase-like
YPA_3788	SSF51569	Aldolase
YPA_3789	SSF51182	RmlC-like cupins
YPA_3790	SSF53822	Periplasmic binding protein-like I
YPA_3792	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPA_3793	SSF158472	HAMP domain-like
YPA_3793	SSF47384	Homodimeric domain of signal transducing histidine kinase
YPA_3793	SSF52172	CheY-like
YPA_3793	SSF55785	PYP-like sensor domain (PAS domain)
YPA_3793	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
YPA_3794	SSF160996	HI0933 insert domain-like
YPA_3794	SSF51905	FAD/NAD(P)-binding domain
YPA_3796	SSF143422	Transposase IS200-like
YPA_3798	SSF52402	Adenine nucleotide alpha hydrolases-like
YPA_3799	SSF51735	NAD(P)-binding Rossmann-fold domains
YPA_3799	SSF53223	Aminoacid dehydrogenase-like, N-terminal domain
YPA_3800	SSF51120	beta-Roll
YPA_3800	SSF55486	Metalloproteases ("zincins"), catalytic domain
YPA_3801	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
YPA_3802	SSF55486	Metalloproteases ("zincins"), catalytic domain
YPA_3804	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
YPA_3805	SSF51905	FAD/NAD(P)-binding domain
YPA_3805	SSF55424	FAD/NAD-linked reductases, dimerisation (C-terminal) domain
YPA_3808	SSF110738	Glycerate kinase I
YPA_3812	SSF103515	Autotransporter
YPA_3812	SSF51126	Pectin lyase-like
YPA_3814	SSF54197	HIT-like
YPA_3816	SSF141868	EAL domain-like
YPA_3817	SSF55331	Tautomerase/MIF
YPA_3818	SSF53613	Ribokinase-like
YPA_3819	SSF63411	LuxS/MPP-like metallohydrolase
YPA_3820	SSF118215	Proton glutamate symport protein
YPA_3821	SSF49785	Galactose-binding domain-like
YPA_3823	SSF56935	Porins
YPA_3824	SSF141868	EAL domain-like
YPA_3824	SSF55073	Nucleotide cyclase
YPA_3825	SSF48208	Six-hairpin glycosidases
YPA_3826	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPA_3827	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPA_3828	SSF161098	MetI-like
YPA_3829	SSF161098	MetI-like
YPA_3830	SSF53850	Periplasmic binding protein-like II
YPA_3832	SSF51126	Pectin lyase-like
YPA_3833	SSF143422	Transposase IS200-like
YPA_3834	SSF103473	MFS general substrate transporter
YPA_3835	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
YPA_3836	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPA_3837	SSF46689	Homeodomain-like
YPA_3837	SSF53098	Ribonuclease H-like
YPA_3838	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPA_3839	SSF140931	Fic-like
YPA_3840	SSF47413	lambda repressor-like DNA-binding domains
YPA_3840	SSF52374	Nucleotidylyl transferase
YPA_3840	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPA_3841	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPA_3841	SSF54211	Ribosomal protein S5 domain 2-like
YPA_3842	SSF56784	HAD-like
YPA_3844	SSF53167	Purine and uridine phosphorylases
YPA_3845	SSF143856	DeoB insert domain-like
YPA_3845	SSF53649	Alkaline phosphatase-like
YPA_3846	SSF52418	Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain
YPA_3846	SSF54680	Pyrimidine nucleoside phosphorylase C-terminal domain
YPA_3847	SSF47648	Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain
YPA_3847	SSF52418	Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain
YPA_3848	SSF51569	Aldolase
YPA_3850	SSF51556	Metallo-dependent hydrolases
YPA_3851	SSF52151	FabD/lysophospholipase-like
YPA_3854	SSF50447	Translation proteins
YPA_3854	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPA_3854	SSF54980	EF-G C-terminal domain-like
YPA_3855	SSF55729	Acyl-CoA N-acyltransferases (Nat)
YPA_3856	SSF102220	DNA polymerase III psi subunit
YPA_3857	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
YPA_3860	SSF55073	Nucleotide cyclase
YPA_3861	SSF51126	Pectin lyase-like
YPA_3864	SSF82693	Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains
YPA_3864	SSF82714	Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains
YPA_3864	SSF82866	Multidrug efflux transporter AcrB transmembrane domain
YPA_3865	SSF111369	HlyD-like secretion proteins
YPA_3868	SSF53756	UDP-Glycosyltransferase/glycogen phosphorylase
YPA_3869	SSF53067	Actin-like ATPase domain
YPA_3870	SSF100950	NagB/RpiA/CoA transferase-like
YPA_3873	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPA_3876	SSF53822	Periplasmic binding protein-like I
YPA_3877	SSF51569	Aldolase
YPA_3878	SSF54909	Dimeric alpha+beta barrel
YPA_3880	SSF47831	Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain
YPA_3880	SSF51621	Phosphoenolpyruvate/pyruvate domain
YPA_3880	SSF52009	Phosphohistidine domain
YPA_3880	SSF55594	HPr-like
YPA_3880	SSF55804	Phoshotransferase/anion transport protein
YPA_3882	SSF52794	PTS system IIB component-like
YPA_3883	SSF52794	PTS system IIB component-like
YPA_3884	SSF46689	Homeodomain-like
YPA_3892	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
YPA_3893	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
YPA_3897	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPA_3898	SSF46689	Homeodomain-like
YPA_3898	SSF53098	Ribonuclease H-like
YPA_3899	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPA_3901	SSF159871	YdgH-like
YPA_3902	SSF47203	Acyl-CoA dehydrogenase C-terminal domain-like
YPA_3902	SSF56645	Acyl-CoA dehydrogenase NM domain-like
YPA_3903	SSF55315	L30e-like
YPA_3903	SSF75217	alpha/beta knot
YPA_3904	SSF50249	Nucleic acid-binding proteins
YPA_3905	SSF46785	"Winged helix" DNA-binding domain
YPA_3906	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPA_3908	SSF117892	Band 7/SPFH domain
YPA_3909	SSF117892	Band 7/SPFH domain
YPA_3910	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPA_3910	SSF54980	EF-G C-terminal domain-like
YPA_3911	SSF50182	Sm-like ribonucleoproteins
YPA_3912	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPA_3913	SSF118116	DNA mismatch repair protein MutL
YPA_3913	SSF54211	Ribosomal protein S5 domain 2-like
YPA_3913	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
YPA_3914	SSF53187	Zn-dependent exopeptidases
YPA_3914	SSF54106	LysM domain
YPA_3915	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPA_3916	SSF53613	Ribokinase-like
YPA_3916	SSF64153	YjeF N-terminal domain-like
YPA_3917	SSF46548	alpha-helical ferredoxin
YPA_3918	SSF53098	Ribonuclease H-like
YPA_3919	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPA_3921	SSF50182	Sm-like ribonucleoproteins
YPA_3921	SSF82689	Mechanosensitive channel protein MscS (YggB), C-terminal domain
YPA_3921	SSF82861	Mechanosensitive channel protein MscS (YggB), transmembrane region
YPA_3922	SSF55681	Class II aaRS and biotin synthetases
YPA_3923	SSF46977	Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain
YPA_3923	SSF51905	FAD/NAD(P)-binding domain
YPA_3923	SSF56425	Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain
YPA_3924	SSF46548	alpha-helical ferredoxin
YPA_3924	SSF54292	2Fe-2S ferredoxin-like
YPA_3925	SSF81343	Fumarate reductase respiratory complex transmembrane subunits
YPA_3926	SSF81343	Fumarate reductase respiratory complex transmembrane subunits
YPA_3927	SSF103481	Multidrug resistance efflux transporter EmrE
YPA_3928	SSF50104	Translation proteins SH3-like domain
YPA_3928	SSF50249	Nucleic acid-binding proteins
YPA_3929	SSF102114	Radical SAM enzymes
YPA_3931	SSF48592	GroEL equatorial domain-like
YPA_3931	SSF52029	GroEL apical domain-like
YPA_3931	SSF54849	GroEL-intermediate domain like
YPA_3932	SSF50129	GroES-like
YPA_3934	SSF48557	L-aspartase-like
YPA_3936	SSF54913	GlnB-like
YPA_3937	SSF52833	Thioredoxin-like
YPA_3937	SSF74863	Thiol:disulfide interchange protein DsbD, N-terminal domain (DsbD-alpha)
YPA_3938	SSF50692	ADC-like
YPA_3938	SSF53706	Formate dehydrogenase/DMSO reductase, domains 1-3
YPA_3939	SSF54862	4Fe-4S ferredoxins
YPA_3940	SSF51971	Nucleotide-binding domain
YPA_3940	SSF54862	4Fe-4S ferredoxins
YPA_3941	SSF46689	Homeodomain-like
YPA_3941	SSF48498	Tetracyclin repressor-like, C-terminal domain
YPA_3944	SSF50203	Bacterial enterotoxins
YPA_3949	SSF46689	Homeodomain-like
YPA_3949	SSF51182	RmlC-like cupins
YPA_3950	SSF46689	Homeodomain-like
YPA_3950	SSF51215	Regulatory protein AraC
YPA_3952	SSF53067	Actin-like ATPase domain
YPA_3953	SSF51658	Xylose isomerase-like
YPA_3954	SSF53639	AraD/HMP-PK domain-like
YPA_3955	SSF56796	Dehydroquinate synthase-like
YPA_3956	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPA_3957	SSF46689	Homeodomain-like
YPA_3957	SSF53098	Ribonuclease H-like
YPA_3958	SSF56796	Dehydroquinate synthase-like
YPA_3959	SSF54909	Dimeric alpha+beta barrel
YPA_3960	SSF50249	Nucleic acid-binding proteins
YPA_3961	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPA_3962	SSF142906	YjbR-like
YPA_3963	SSF53383	PLP-dependent transferases
YPA_3964	SSF50621	Alanine racemase C-terminal domain-like
YPA_3964	SSF51419	PLP-binding barrel
YPA_3965	SSF48024	N-terminal domain of DnaB helicase
YPA_3965	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPA_3966	SSF50129	GroES-like
YPA_3966	SSF51735	NAD(P)-binding Rossmann-fold domains
YPA_3968	SSF51395	FMN-linked oxidoreductases
YPA_3969	SSF46785	"Winged helix" DNA-binding domain
YPA_3970	SSF46785	"Winged helix" DNA-binding domain
YPA_3970	SSF51306	LexA/Signal peptidase
YPA_3972	SSF69593	Glycerol-3-phosphate (1)-acyltransferase
YPA_3974	SSF64288	Chorismate lyase-like
YPA_3975	SSF103515	Autotransporter
YPA_3975	SSF51126	Pectin lyase-like
YPA_3976	SSF49265	Fibronectin type III
YPA_3976	SSF51055	Carbohydrate binding domain
YPA_3976	SSF56176	FAD-binding/transporter-associated domain-like
YPA_3978	SSF103473	MFS general substrate transporter
YPA_3979	SSF49354	PapD-like
YPA_3979	SSF49584	Periplasmic chaperone C-domain
YPA_3980	SSF141729	FimD N-terminal domain-like
YPA_3985	SSF158682	TerB-like
YPA_3988	SSF56059	Glutathione synthetase ATP-binding domain-like
YPA_3989	SSF53271	PRTase-like
YPA_3990	SSF56784	HAD-like
YPA_3992	SSF51621	Phosphoenolpyruvate/pyruvate domain
YPA_3993	SSF46785	"Winged helix" DNA-binding domain
YPA_3994	SSF51730	FAD-linked oxidoreductase
YPA_3995	SSF102114	Radical SAM enzymes
YPA_3996	SSF144064	Heme iron utilization protein-like
YPA_3997	SSF51735	NAD(P)-binding Rossmann-fold domains
YPA_3999	SSF56935	Porins
YPA_4000	SSF144064	Heme iron utilization protein-like
YPA_4001	SSF53807	"Helical backbone" metal receptor
YPA_4002	SSF81345	ABC transporter involved in vitamin B12 uptake, BtuC
YPA_4003	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPA_4004	SSF53383	PLP-dependent transferases
YPA_4006	SSF46785	"Winged helix" DNA-binding domain
YPA_4006	SSF53850	Periplasmic binding protein-like II
YPA_4007	SSF64307	SirA-like
YPA_4009	SSF160544	EscU C-terminal domain-like
YPA_4013	SSF101801	Surface presentation of antigens (SPOA)
YPA_4016	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPA_4023	SSF140129	MxiH-like
YPA_4024	SSF46689	Homeodomain-like
YPA_4028	SSF47226	Histidine-containing phosphotransfer domain, HPT domain
YPA_4028	SSF47384	Homodimeric domain of signal transducing histidine kinase
YPA_4028	SSF52172	CheY-like
YPA_4028	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
YPA_4029	SSF46894	C-terminal effector domain of the bipartite response regulators
YPA_4029	SSF52172	CheY-like
YPA_4030	SSF118215	Proton glutamate symport protein
YPA_4031	SSF56801	Acetyl-CoA synthetase-like
YPA_4034	SSF53474	alpha/beta-Hydrolases
YPA_4035	SSF46689	Homeodomain-like
YPA_4035	SSF53098	Ribonuclease H-like
YPA_4036	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPA_4037	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPA_4038	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPA_4039	SSF103088	OmpA-like
YPA_4040	SSF55073	Nucleotide cyclase
YPA_4042	SSF56784	HAD-like
YPA_4042	SSF81653	Calcium ATPase, transduction domain A
YPA_4042	SSF81660	Metal cation-transporting ATPase, ATP-binding domain N
YPA_4042	SSF81665	Calcium ATPase, transmembrane domain M
YPA_4043	SSF48435	Bacterial muramidases
YPA_4043	SSF53955	Lysozyme-like
YPA_4044	SSF48295	TrpR-like
YPA_4045	SSF52972	ITPase-like
YPA_4046	SSF53254	Phosphoglycerate mutase-like
YPA_4047	SSF46689	Homeodomain-like
YPA_4047	SSF55136	Probable bacterial effector-binding domain
YPA_4049	SSF46894	C-terminal effector domain of the bipartite response regulators
YPA_4049	SSF52172	CheY-like
YPA_4051	SSF51735	NAD(P)-binding Rossmann-fold domains
YPA_4051	SSF53633	Carbamate kinase-like
YPA_4051	SSF55021	ACT-like
YPA_4051	SSF55347	Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
YPA_4052	SSF54211	Ribosomal protein S5 domain 2-like
YPA_4052	SSF55060	GHMP Kinase, C-terminal domain
YPA_4053	SSF53686	Tryptophan synthase beta subunit-like PLP-dependent enzymes
YPA_4056	SSF51569	Aldolase
YPA_4058	SSF53218	Molybdenum cofactor biosynthesis proteins
YPA_4059	SSF103473	MFS general substrate transporter
YPA_4060	SSF49695	gamma-Crystallin-like
YPA_4060	SSF55729	Acyl-CoA N-acyltransferases (Nat)
YPA_4062	SSF100920	Heat shock protein 70kD (HSP70), peptide-binding domain
YPA_4062	SSF100934	Heat shock protein 70kD (HSP70), C-terminal subdomain
YPA_4062	SSF53067	Actin-like ATPase domain
YPA_4063	SSF46565	Chaperone J-domain
YPA_4063	SSF49493	HSP40/DnaJ peptide-binding domain
YPA_4063	SSF57938	DnaJ/Hsp40 cysteine-rich domain
YPA_4065	SSF46785	"Winged helix" DNA-binding domain
YPA_4065	SSF53850	Periplasmic binding protein-like II
YPA_4066	SSF46992	Ribosomal protein S20
YPA_4067	SSF52374	Nucleotidylyl transferase
YPA_4067	SSF82114	Riboflavin kinase-like
YPA_4068	SSF47323	Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
YPA_4068	SSF50677	ValRS/IleRS/LeuRS editing domain
YPA_4068	SSF52374	Nucleotidylyl transferase
YPA_4070	SSF54534	FKBP-like
YPA_4072	SSF143422	Transposase IS200-like
YPA_4073	SSF51735	NAD(P)-binding Rossmann-fold domains
YPA_4073	SSF55347	Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
YPA_4074	SSF52021	Carbamoyl phosphate synthetase, small subunit N-terminal domain
YPA_4074	SSF52317	Class I glutamine amidotransferase-like
YPA_4075	SSF48108	Carbamoyl phosphate synthetase, large subunit connection domain
YPA_4075	SSF52335	Methylglyoxal synthase-like
YPA_4075	SSF52440	PreATP-grasp domain
YPA_4075	SSF56059	Glutathione synthetase ATP-binding domain-like
YPA_4079	SSF53597	Dihydrofolate reductase-like
YPA_4080	SSF143422	Transposase IS200-like
YPA_4084	SSF56300	Metallo-dependent phosphatases
YPA_4085	SSF110069	ApaG-like
YPA_4086	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
YPA_4087	SSF53659	Isocitrate/Isopropylmalate dehydrogenase-like
YPA_4088	SSF109998	Triger factor/SurA peptide-binding domain-like
YPA_4088	SSF54534	FKBP-like
YPA_4090	SSF46565	Chaperone J-domain
YPA_4091	SSF55120	Pseudouridine synthase
YPA_4097	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPA_4098	SSF46689	Homeodomain-like
YPA_4098	SSF53098	Ribonuclease H-like
YPA_4100	SSF46894	C-terminal effector domain of the bipartite response regulators
YPA_4100	SSF52172	CheY-like
YPA_4101	SSF53649	Alkaline phosphatase-like
YPA_4102	SSF53474	alpha/beta-Hydrolases
YPA_4104	SSF48557	L-aspartase-like
YPA_4105	SSF111326	Urocanase
YPA_4106	SSF53686	Tryptophan synthase beta subunit-like PLP-dependent enzymes
YPA_4107	SSF53271	PRTase-like
YPA_4110	SSF46689	Homeodomain-like
YPA_4110	SSF53098	Ribonuclease H-like
YPA_4111	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPA_4112	SSF56059	Glutathione synthetase ATP-binding domain-like
YPA_4113	SSF53807	"Helical backbone" metal receptor
YPA_4114	SSF81345	ABC transporter involved in vitamin B12 uptake, BtuC
YPA_4115	SSF81345	ABC transporter involved in vitamin B12 uptake, BtuC
YPA_4116	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPA_4119	SSF47413	lambda repressor-like DNA-binding domains
YPA_4123	SSF56349	DNA breaking-rejoining enzymes
YPA_4124	SSF46689	Homeodomain-like
YPA_4124	SSF53822	Periplasmic binding protein-like I
YPA_4126	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPA_4127	SSF53822	Periplasmic binding protein-like I
YPA_4128	SSF51658	Xylose isomerase-like
YPA_4129	SSF53067	Actin-like ATPase domain
YPA_4130	SSF49401	Bacterial adhesins
YPA_4131	SSF49354	PapD-like
YPA_4131	SSF49584	Periplasmic chaperone C-domain
YPA_4134	SSF141729	FimD N-terminal domain-like
YPA_4135	SSF49401	Bacterial adhesins
YPA_4137	SSF46689	Homeodomain-like
YPA_4137	SSF48295	TrpR-like
YPA_4138	SSF53098	Ribonuclease H-like
YPA_4139	SSF56784	HAD-like
YPA_4140	SSF54211	Ribosomal protein S5 domain 2-like
YPA_4140	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
YPA_4140	SSF56719	Type II DNA topoisomerase
YPA_4141	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPA_4142	SSF55979	DNA clamp
YPA_4143	SSF48295	TrpR-like
YPA_4143	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPA_4145	SSF54211	Ribosomal protein S5 domain 2-like
YPA_4148	SSF116878	TrmE connector domain
YPA_4148	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPA_4153	SSF56784	HAD-like
YPA_4154	SSF161098	MetI-like
YPA_4155	SSF161098	MetI-like
YPA_4156	SSF53850	Periplasmic binding protein-like II
YPA_4158	SSF109755	PhoU-like
YPA_4159	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPA_4160	SSF161098	MetI-like
YPA_4161	SSF161098	MetI-like
YPA_4162	SSF53850	Periplasmic binding protein-like II
YPA_4163	SSF53697	SIS domain
YPA_4163	SSF56235	N-terminal nucleophile aminohydrolases (Ntn hydrolases)
YPA_4164	SSF51161	Trimeric LpxA-like enzymes
YPA_4164	SSF53448	Nucleotide-diphospho-sugar transferases
YPA_4165	SSF46604	Epsilon subunit of F1F0-ATP synthase C-terminal domain
YPA_4165	SSF51344	Epsilon subunit of F1F0-ATP synthase N-terminal domain
YPA_4166	SSF47917	C-terminal domain of alpha and beta subunits of F1 ATP synthase
YPA_4166	SSF50615	N-terminal domain of alpha and beta subunits of F1 ATP synthase
YPA_4166	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPA_4167	SSF52943	ATP synthase (F1-ATPase), gamma subunit
YPA_4168	SSF47917	C-terminal domain of alpha and beta subunits of F1 ATP synthase
YPA_4168	SSF50615	N-terminal domain of alpha and beta subunits of F1 ATP synthase
YPA_4168	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPA_4169	SSF47928	N-terminal domain of the delta subunit of the F1F0-ATP synthase
YPA_4170	SSF81573	F1F0 ATP synthase subunit B, membrane domain
YPA_4171	SSF81333	F1F0 ATP synthase subunit C
YPA_4172	SSF81336	F1F0 ATP synthase subunit A
YPA_4174	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
YPA_4175	SSF51905	FAD/NAD(P)-binding domain
YPA_CD0001	SSF46689	Homeodomain-like
YPA_CD0001	SSF53098	Ribonuclease H-like
YPA_CD0002	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPA_CD0003	SSF64449	YopH tyrosine phosphatase N-terminal domain
YPA_CD0004	SSF160527	V-type ATPase subunit E-like
YPA_CD0008	SSF140591	Type III secretion system domain
YPA_CD0010	SSF140129	MxiH-like
YPA_CD0011	SSF49879	SMAD/FHA domain
YPA_CD0013	SSF69635	Type III secretory system chaperone-like
YPA_CD0014	SSF46689	Homeodomain-like
YPA_CD0014	SSF51215	Regulatory protein AraC
YPA_CD0015	SSF160544	EscU C-terminal domain-like
YPA_CD0019	SSF101801	Surface presentation of antigens (SPOA)
YPA_CD0022	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPA_CD0023	SSF140591	Type III secretion system domain
YPA_CD0024	SSF140591	Type III secretion system domain
YPA_CD0025	SSF69635	Type III secretory system chaperone-like
YPA_CD0027	SSF48452	TPR-like
YPA_CD0030	SSF103388	Virulence-associated V antigen
YPA_CD0031	SSF48452	TPR-like
YPA_CD0037	SSF52058	L domain-like
YPA_CD0041	SSF69635	Type III secretory system chaperone-like
YPA_CD0042	SSF54001	Cysteine proteinases
YPA_CD0045	SSF46689	Homeodomain-like
YPA_CD0046	SSF53098	Ribonuclease H-like
YPA_CD0047	SSF53098	Ribonuclease H-like
YPA_CD0048	SSF46955	Putative DNA-binding domain
YPA_CD0048	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPA_CD0049	SSF109709	KorB DNA-binding domain-like
YPA_CD0049	SSF110849	ParB/Sulfiredoxin
YPA_CD0050	SSF47598	Ribbon-helix-helix
YPA_CD0051	SSF47233	Bacterial GAP domain
YPA_CD0051	SSF69635	Type III secretory system chaperone-like
YPA_CD0052	SSF69635	Type III secretory system chaperone-like
YPA_CD0053	SSF53098	Ribonuclease H-like
YPA_CD0054	SSF53098	Ribonuclease H-like
YPA_CD0055	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPA_CD0056	SSF69635	Type III secretory system chaperone-like
YPA_CD0057	SSF53098	Ribonuclease H-like
YPA_CD0058	SSF46689	Homeodomain-like
YPA_CD0059	SSF46689	Homeodomain-like
YPA_CD0059	SSF53041	Resolvase-like
YPA_CD0062	SSF101967	Adhesin YadA, collagen-binding domain
YPA_CD0062	SSF54523	Pili subunits
YPA_CD0063	SSF46689	Homeodomain-like
YPA_CD0064	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPA_CD0065	SSF46689	Homeodomain-like
YPA_CD0067	SSF56024	Phospholipase D/nuclease
YPA_CD0070	SSF53098	Ribonuclease H-like
YPA_CD0071	SSF56112	Protein kinase-like (PK-like)
YPA_CD0073	SSF53098	Ribonuclease H-like
YPA_CD0075	SSF52799	(Phosphotyrosine protein) phosphatases II
YPA_CD0075	SSF64449	YopH tyrosine phosphatase N-terminal domain
YPA_CD0077	SSF53098	Ribonuclease H-like
YPA_CD0080	SSF46689	Homeodomain-like
YPA_CD0088	SSF69635	Type III secretory system chaperone-like
YPA_MT0001	SSF46689	Homeodomain-like
YPA_MT0001	SSF53098	Ribonuclease H-like
YPA_MT0002	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPA_MT0004	SSF88874	Receptor-binding domain of short tail fibre protein gp12
YPA_MT0006	SSF49265	Fibronectin type III
YPA_MT0008	SSF102712	JAB1/MPN domain
YPA_MT0008	SSF54001	Cysteine proteinases
YPA_MT0012	SSF57997	Tropomyosin
YPA_MT0015	SSF49373	Invasin/intimin cell-adhesion fragments
YPA_MT0021	SSF49373	Invasin/intimin cell-adhesion fragments
YPA_MT0022	SSF56563	Major capsid protein gp5
YPA_MT0025	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPA_MT0028	SSF55729	Acyl-CoA N-acyltransferases (Nat)
YPA_MT0030	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPA_MT0031	SSF110849	ParB/Sulfiredoxin
YPA_MT0032	SSF110849	ParB/Sulfiredoxin
YPA_MT0033	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPA_MT0038	SSF143422	Transposase IS200-like
YPA_MT0039	SSF53098	Ribonuclease H-like
YPA_MT0040	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPA_MT0041	SSF56300	Metallo-dependent phosphatases
YPA_MT0042	SSF53850	Periplasmic binding protein-like II
YPA_MT0049	SSF46689	Homeodomain-like
YPA_MT0049	SSF53098	Ribonuclease H-like
YPA_MT0050	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPA_MT0052	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPA_MT0054	SSF47807	5' to 3' exonuclease, C-terminal subdomain
YPA_MT0054	SSF88723	PIN domain-like
YPA_MT0059	SSF52141	Uracil-DNA glycosylase-like
YPA_MT0060	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPA_MT0061	SSF53300	vWA-like
YPA_MT0062	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPA_MT0063	SSF46689	Homeodomain-like
YPA_MT0063	SSF53098	Ribonuclease H-like
YPA_MT0066	SSF56349	DNA breaking-rejoining enzymes
YPA_MT0068	SSF56349	DNA breaking-rejoining enzymes
YPA_MT0069	SSF141729	FimD N-terminal domain-like
YPA_MT0070	SSF49354	PapD-like
YPA_MT0070	SSF49584	Periplasmic chaperone C-domain
YPA_MT0074	SSF56672	DNA/RNA polymerases
YPA_MT0075	SSF56024	Phospholipase D/nuclease
YPA_MT0076	SSF56024	Phospholipase D/nuclease
YPA_MT0079	SSF53041	Resolvase-like
YPA_MT0080	SSF143120	YefM-like
YPA_MT0081	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPA_MT0083	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPA_MT0084	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
YPA_MT0089	SSF54786	YcfA/nrd intein domain
YPA_MT0090	SSF109709	KorB DNA-binding domain-like
YPA_MT0090	SSF110849	ParB/Sulfiredoxin
YPA_MT0095	SSF49401	Bacterial adhesins
YPA_MT0096	SSF46689	Homeodomain-like
YPA_MT0096	SSF55136	Probable bacterial effector-binding domain
YPA_PCP0001	SSF46689	Homeodomain-like
YPA_PCP0001	SSF53098	Ribonuclease H-like
YPA_PCP0002	SSF52540	P-loop containing nucleoside triphosphate hydrolases
YPA_PCP0003	SSF53955	Lysozyme-like
YPA_PCP0005	SSF69917	OMPT-like
YPA_PCP0006	SSF47413	lambda repressor-like DNA-binding domains
YPA_PCP0008	SSF47380	ROP protein
YPA_PCP0009	SSF47380	ROP protein