CH58_1 PF01124 MAPEG family CH58_10 PF00950 CH58_10 CH58_100 PF00551 Formyl transferase CH58_100 PF01842 ACT domain CH58_1000 PF03814 CH58_1000 CH58_1001 PF10725 CH58_1001 CH58_1002 PF08349 CH58_1002 CH58_1003 PF00875 DNA photolyase CH58_1003 PF03441 FAD binding domain of DNA photolyase CH58_1004 PF02112 CH58_1004 CH58_1005 PF01784 NIF3 (NGG1p interacting factor 3) CH58_1007 PF02682 Allophanate hydrolase subunit 1 CH58_1008 PF02626 Allophanate hydrolase subunit 2 CH58_1009 PF03746 LamB/YcsF family CH58_101 PF00872 CH58_101 CH58_1010 PF06149 CH58_1010 CH58_1011 PF06166 CH58_1011 CH58_1012 PF01470 Pyroglutamyl peptidase CH58_1013 PF03167 Uracil DNA glycosylase superfamily CH58_1014 PF01228 Glycine radical CH58_1015 PF11187 Protein of unknown function (DUF2974) CH58_1019 PF00270 DEAD/DEAH box helicase CH58_1019 PF00271 Helicase conserved C-terminal domain CH58_102 PF02810 SEC-C motif CH58_1020 PF05175 Methyltransferase small domain CH58_1021 PF00890 FAD binding domain CH58_1021 PF02910 Fumarate reductase flavoprotein C-term CH58_1022 PF04542 Sigma-70 region 2 CH58_1022 PF08281 Sigma-70, region 4 CH58_1023 PF03872 Anti sigma-E protein RseA, N-terminal domain CH58_1023 PF03873 Anti sigma-E protein RseA, C-terminal domain CH58_1024 PF03888 MucB/RseB family CH58_1024 PF17188 CH58_1024 CH58_1025 PF04246 CH58_1025 CH58_1027 PF00009 Elongation factor Tu GTP binding domain CH58_1027 PF00679 Elongation factor G C-terminus CH58_1027 PF03144 Elongation factor Tu domain 2 CH58_1027 PF06421 GTP-binding protein LepA C-terminus CH58_1028 PF00717 Peptidase S24-like CH58_1028 PF10502 Signal peptidase, peptidase S26 CH58_1029 PF00035 Double-stranded RNA binding motif CH58_1029 PF14622 Ribonuclease-III-like CH58_103 PF00072 Response regulator receiver domain CH58_1030 PF01926 50S ribosome-binding GTPase CH58_1030 PF07650 KH domain CH58_1031 PF02565 Recombination protein O C terminal CH58_1031 PF11967 Recombination protein O N terminal CH58_1032 PF00665 Integrase core domain CH58_1032 PF02796 Helix-turn-helix domain of resolvase CH58_1033 PF01695 IstB-like ATP binding protein CH58_1034 PF13356 Domain of unknown function (DUF4102) CH58_1035 PF01527 Transposase CH58_1037 PF12697 Alpha/beta hydrolase family CH58_1039 PF01402 Ribbon-helix-helix protein, copG family CH58_104 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain CH58_104 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain CH58_104 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain CH58_1040 PF00258 Flavodoxin CH58_1041 PF01475 Ferric uptake regulator family CH58_1042 PF00728 Glycosyl hydrolase family 20, catalytic domain CH58_1042 PF02838 Glycosyl hydrolase family 20, domain 2 CH58_1042 PF03174 Chitobiase/beta-hexosaminidase C-terminal domain CH58_1043 PF03173 Putative carbohydrate binding domain CH58_1044 PF03573 outer membrane porin, OprD family CH58_1045 PF00749 tRNA synthetases class I (E and Q), catalytic domain CH58_1045 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain CH58_1046 PF01797 Transposase IS200 like CH58_1047 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 CH58_1047 PF00367 phosphotransferase system, EIIB CH58_1047 PF02378 Phosphotransferase system, EIIC CH58_1048 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase CH58_1049 PF01979 Amidohydrolase family CH58_105 PF00816 H-NS histone family CH58_1050 PF00480 ROK family CH58_1050 PF01047 MarR family CH58_1051 PF13242 HAD-hyrolase-like CH58_1051 PF13344 Haloacid dehalogenase-like hydrolase CH58_1052 PF00733 Asparagine synthase CH58_1052 PF13537 Glutamine amidotransferase domain CH58_1059 PF01494 FAD binding domain CH58_106 PF00265 Thymidine kinase CH58_1060 PF00919 Uncharacterized protein family UPF0004 CH58_1060 PF01938 TRAM domain CH58_1060 PF04055 Radical SAM superfamily CH58_1061 PF02562 PhoH-like protein CH58_1062 PF02130 Uncharacterized protein family UPF0054 CH58_1063 PF00571 CBS domain CH58_1063 PF03471 Transporter associated domain CH58_1064 PF00795 Carbon-nitrogen hydrolase CH58_1065 PF00497 Bacterial extracellular solute-binding proteins, family 3 CH58_1066 PF00528 Binding-protein-dependent transport system inner membrane component CH58_1067 PF00528 Binding-protein-dependent transport system inner membrane component CH58_1068 PF00005 ABC transporter CH58_1069 PF07295 CH58_1069 CH58_107 PF01695 IstB-like ATP binding protein CH58_1070 PF00133 tRNA synthetases class I (I, L, M and V) CH58_1070 PF08264 Anticodon-binding domain of tRNA CH58_1070 PF13603 Leucyl-tRNA synthetase, Domain 2 CH58_1071 PF04390 Lipopolysaccharide-assembly CH58_1072 PF06144 DNA polymerase III, delta subunit CH58_1072 PF14840 Processivity clamp loader gamma complex DNA pol III C-term CH58_1073 PF01467 Cytidylyltransferase CH58_1074 PF02410 Oligomerisation domain CH58_1075 PF02590 Predicted SPOUT methyltransferase CH58_1076 PF00905 Penicillin binding protein transpeptidase domain CH58_1076 PF03717 Penicillin-binding Protein dimerisation domain CH58_1077 PF01098 CH58_1077 CH58_1078 PF03330 Rare lipoprotein A (RlpA)-like double-psi beta-barrel CH58_1078 PF05036 Sporulation related domain CH58_1079 PF00665 Integrase core domain CH58_1079 PF02796 Helix-turn-helix domain of resolvase CH58_108 PF01695 IstB-like ATP binding protein CH58_1080 PF01695 IstB-like ATP binding protein CH58_1081 PF00768 D-alanyl-D-alanine carboxypeptidase CH58_1081 PF07943 Penicillin-binding protein 5, C-terminal domain CH58_1082 PF04359 Protein of unknown function (DUF493) CH58_1083 PF03099 Biotin/lipoate A/B protein ligase family CH58_1084 PF04055 Radical SAM superfamily CH58_1084 PF16881 CH58_1084 CH58_1085 PF02416 mttA/Hcf106 family CH58_1086 PF02537 CH58_1086 CH58_1087 PF00313 'Cold-shock' DNA-binding domain CH58_1088 PF00313 'Cold-shock' DNA-binding domain CH58_1089 PF00196 Bacterial regulatory proteins, luxR family CH58_1092 PF08971 Glycogen synthesis protein CH58_1093 PF03992 Antibiotic biosynthesis monooxygenase CH58_1094 PF00005 ABC transporter CH58_1094 PF00664 ABC transporter transmembrane region CH58_1096 PF04962 KduI/IolB family CH58_1097 PF01261 Xylose isomerase-like TIM barrel CH58_1098 PF09863 Uncharacterized protein conserved in bacteria (DUF2090) CH58_1099 PF00294 pfkB family carbohydrate kinase CH58_11 PF00005 ABC transporter CH58_1100 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CH58_1100 PF02894 Oxidoreductase family, C-terminal alpha/beta domain CH58_1101 PF02653 CH58_1101 CH58_1102 PF00005 ABC transporter CH58_1103 PF13407 Periplasmic binding protein domain CH58_1104 PF02894 Oxidoreductase family, C-terminal alpha/beta domain CH58_1105 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CH58_1106 PF00205 Thiamine pyrophosphate enzyme, central domain CH58_1106 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CH58_1106 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CH58_1107 PF00171 Aldehyde dehydrogenase family CH58_1109 PF01380 SIS domain CH58_1109 PF01418 Helix-turn-helix domain, rpiR family CH58_1110 PF07274 CH58_1110 CH58_1112 PF00207 Alpha-2-macroglobulin family CH58_1112 PF01835 MG2 domain CH58_1112 PF07703 Alpha-2-macroglobulin family N-terminal region CH58_1112 PF11974 Alpha-2-macroglobulin MG1 domain CH58_1113 PF00912 Transglycosylase CH58_1114 PF00872 CH58_1114 CH58_1115 PF00905 Penicillin binding protein transpeptidase domain CH58_1115 PF06832 CH58_1115 CH58_1116 PF13693 Winged helix-turn-helix DNA-binding CH58_1118 PF06836 CH58_1118 CH58_1119 PF06836 CH58_1119 CH58_1120 PF05638 Protein of unknown function (DUF796) CH58_1123 PF03212 Pertactin CH58_1123 PF03797 Autotransporter beta-domain CH58_1124 PF11459 CH58_1124 CH58_1124 PF17194 CH58_1124 CH58_1126 PF00872 CH58_1126 CH58_1127 PF00872 CH58_1127 CH58_1128 PF09925 CH58_1128 CH58_1128 PF14351 CH58_1128 CH58_1129 PF14345 CH58_1129 CH58_113 PF00171 Aldehyde dehydrogenase family CH58_113 PF00465 Iron-containing alcohol dehydrogenase CH58_1130 PF00933 Glycosyl hydrolase family 3 N terminal domain CH58_1130 PF01915 Glycosyl hydrolase family 3 C-terminal domain CH58_1130 PF14310 Fibronectin type III-like domain CH58_1132 PF00248 Aldo/keto reductase family CH58_1133 PF00248 Aldo/keto reductase family CH58_1134 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH58_1134 PF03466 LysR substrate binding domain CH58_1135 PF00665 Integrase core domain CH58_1135 PF02796 Helix-turn-helix domain of resolvase CH58_1137 PF01695 IstB-like ATP binding protein CH58_114 PF01914 CH58_114 CH58_1140 PF00782 Dual specificity phosphatase, catalytic domain CH58_1140 PF14378 CH58_1140 CH58_1141 PF12146 Putative lysophospholipase CH58_1141 PF12147 CH58_1141 CH58_1142 PF01553 Acyltransferase CH58_1143 PF01148 Cytidylyltransferase family CH58_1144 PF01066 CDP-alcohol phosphatidyltransferase CH58_115 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CH58_1151 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain CH58_1151 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain CH58_1152 PF13275 S4 domain CH58_1153 PF01797 Transposase IS200 like CH58_1155 PF01406 tRNA synthetases class I (C) catalytic domain CH58_1155 PF09190 DALR domain CH58_1156 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD CH58_1157 PF00149 Calcineurin-like phosphoesterase CH58_1158 PF00731 AIR carboxylase CH58_1159 PF02222 ATP-grasp domain CH58_116 PF00528 Binding-protein-dependent transport system inner membrane component CH58_1160 PF02687 CH58_1160 CH58_1161 PF00005 ABC transporter CH58_1162 PF13472 GDSL-like Lipase/Acylhydrolase family CH58_1163 PF00106 short chain dehydrogenase CH58_1164 PF00085 Thioredoxin CH58_1164 PF14559 Tetratricopeptide repeat CH58_1164 PF14561 Tetratricopeptide repeat CH58_1165 PF01145 SPFH domain / Band 7 family CH58_1166 PF01957 NfeD-like C-terminal, partner-binding CH58_1167 PF13411 MerR HTH family regulatory protein CH58_1168 PF00122 E1-E2 ATPase CH58_1168 PF00403 Heavy-metal-associated domain CH58_1168 PF00702 haloacid dehalogenase-like hydrolase CH58_1169 PF01963 CH58_1169 CH58_117 PF00528 Binding-protein-dependent transport system inner membrane component CH58_117 PF12911 CH58_117 CH58_1170 PF04073 Aminoacyl-tRNA editing domain CH58_1173 PF02872 5'-nucleotidase, C-terminal domain CH58_1174 PF00149 Calcineurin-like phosphoesterase CH58_1176 PF07690 Major Facilitator Superfamily CH58_1177 PF00999 Sodium/hydrogen exchanger family CH58_1177 PF02254 TrkA-N domain CH58_1178 PF00294 pfkB family carbohydrate kinase CH58_1179 PF02706 Chain length determinant protein CH58_118 PF00005 ABC transporter CH58_118 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CH58_1180 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain CH58_1180 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I CH58_1180 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II CH58_1180 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III CH58_1181 PF00535 Glycosyl transferase family 2 CH58_1182 PF00483 Nucleotidyl transferase CH58_1182 PF01050 Mannose-6-phosphate isomerase CH58_1183 PF01370 NAD dependent epimerase/dehydratase family CH58_1184 PF16363 CH58_1184 CH58_1185 PF16363 CH58_1185 CH58_1186 PF00534 Glycosyl transferases group 1 CH58_1186 PF13439 Glycosyltransferase Family 4 CH58_1189 PF13692 Glycosyl transferases group 1 CH58_119 PF00005 ABC transporter CH58_119 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CH58_1191 PF00535 Glycosyl transferase family 2 CH58_1193 PF13450 NAD(P)-binding Rossmann-like domain CH58_1194 PF01370 NAD dependent epimerase/dehydratase family CH58_1195 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family CH58_1196 PF16363 CH58_1196 CH58_1197 PF00483 Nucleotidyl transferase CH58_1198 PF00111 2Fe-2S iron-sulfur cluster binding domain CH58_1198 PF00175 Oxidoreductase NAD-binding domain CH58_1198 PF00970 Oxidoreductase FAD-binding domain CH58_1199 PF00762 Ferrochelatase CH58_12 PF01297 Periplasmic solute binding protein family CH58_1200 PF00406 Adenylate kinase CH58_1200 PF05191 Adenylate kinase, active site lid CH58_1201 PF00183 Hsp90 protein CH58_1201 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH58_1202 PF02132 RecR protein CH58_1202 PF13662 Toprim domain CH58_1203 PF02575 YbaB/EbfC DNA-binding family CH58_1204 PF12168 CH58_1204 CH58_1204 PF12169 DNA polymerase III subunits gamma and tau domain III CH58_1204 PF12170 DNA polymerase III tau subunit V interacting with alpha CH58_1204 PF13177 DNA polymerase III, delta subunit CH58_1205 PF00156 Phosphoribosyl transferase domain CH58_1206 PF04304 CH58_1206 CH58_1207 PF07445 Primosomal replication protein priB and priC CH58_1208 PF00924 Mechanosensitive ion channel CH58_1208 PF12794 CH58_1208 CH58_1209 PF00665 Integrase core domain CH58_1209 PF02796 Helix-turn-helix domain of resolvase CH58_121 PF04269 Protein of unknown function, DUF440 CH58_1211 PF01695 IstB-like ATP binding protein CH58_1212 PF12794 CH58_1212 CH58_1212 PF12795 CH58_1212 CH58_1213 PF02635 DsrE/DsrF-like family CH58_1214 PF00440 Bacterial regulatory proteins, tetR family CH58_1214 PF08361 MAATS-type transcriptional repressor, C-terminal region CH58_1215 PF00529 HlyD family secretion protein CH58_1215 PF16576 CH58_1215 CH58_1216 PF00873 AcrB/AcrD/AcrF family CH58_1217 PF01197 Ribosomal protein L31 CH58_1218 PF00444 Ribosomal protein L36 CH58_122 PF13091 PLD-like domain CH58_122 PF13396 CH58_122 CH58_1220 PF10757 CH58_1220 CH58_1221 PF05321 Haemolysin expression modulating protein CH58_1222 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain CH58_1223 PF09619 Type III secretion system lipoprotein chaperone (YscW) CH58_1224 PF13622 Thioesterase-like superfamily CH58_1225 PF00909 Ammonium Transporter Family CH58_1226 PF00543 Nitrogen regulatory protein P-II CH58_1227 PF00005 ABC transporter CH58_1227 PF00664 ABC transporter transmembrane region CH58_1228 PF00005 ABC transporter CH58_1228 PF00664 ABC transporter transmembrane region CH58_1229 PF01037 AsnC family CH58_1229 PF13412 Winged helix-turn-helix DNA-binding CH58_123 PF13505 Outer membrane protein beta-barrel domain CH58_1230 PF00291 Pyridoxal-phosphate dependent enzyme CH58_1231 PF08282 haloacid dehalogenase-like hydrolase CH58_1232 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CH58_1232 PF12793 CH58_1232 CH58_1233 PF06508 Queuosine biosynthesis protein QueC CH58_1234 PF13279 Thioesterase-like superfamily CH58_1235 PF12836 Helix-hairpin-helix motif CH58_1236 PF13145 PPIC-type PPIASE domain CH58_1236 PF13624 SurA N-terminal domain CH58_1237 PF00216 Bacterial DNA-binding protein CH58_1238 PF00004 ATPase family associated with various cellular activities (AAA) CH58_1238 PF02190 ATP-dependent protease La (LON) domain CH58_1238 PF05362 Lon protease (S16) C-terminal proteolytic domain CH58_1239 PF06689 ClpX C4-type zinc finger CH58_1239 PF07724 AAA domain (Cdc48 subfamily) CH58_1239 PF10431 C-terminal, D2-small domain, of ClpB protein CH58_1240 PF00574 Clp protease CH58_1241 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CH58_1241 PF05697 Bacterial trigger factor protein (TF) CH58_1241 PF05698 Bacterial trigger factor protein (TF) C-terminus CH58_1243 PF01722 BolA-like protein CH58_1244 PF03923 CH58_1244 CH58_1244 PF08139 CH58_1244 CH58_1245 PF07690 Major Facilitator Superfamily CH58_1246 PF03502 Nucleoside-specific channel-forming protein, Tsx CH58_1247 PF06481 COX Aromatic Rich Motif CH58_1248 PF00115 Cytochrome C and Quinol oxidase polypeptide I CH58_1249 PF00510 Cytochrome c oxidase subunit III CH58_125 PF13453 CH58_125 CH58_1250 PF03626 CH58_1250 CH58_1251 PF01040 UbiA prenyltransferase family CH58_1252 PF07690 Major Facilitator Superfamily CH58_1253 PF04461 Protein of unknown function (DUF520) CH58_1254 PF02558 Ketopantoate reductase PanE/ApbA CH58_1254 PF08546 Ketopantoate reductase PanE/ApbA C terminal CH58_1255 PF01965 DJ-1/PfpI family CH58_1256 PF02568 Thiamine biosynthesis protein (ThiI) CH58_1256 PF02926 THUMP domain CH58_1257 PF02609 Exonuclease VII small subunit CH58_1258 PF00348 Polyprenyl synthetase CH58_1259 PF02779 Transketolase, pyrimidine binding domain CH58_1259 PF02780 Transketolase, C-terminal domain CH58_1259 PF13292 1-deoxy-D-xylulose-5-phosphate synthase CH58_126 PF03795 YCII-related domain CH58_1260 PF01797 Transposase IS200 like CH58_1261 PF04608 Phosphatidylglycerophosphatase A CH58_1262 PF00586 AIR synthase related protein, N-terminal domain CH58_1262 PF02769 AIR synthase related protein, C-terminal domain CH58_1263 PF01029 NusB family CH58_1264 PF00885 6,7-dimethyl-8-ribityllumazine synthase CH58_1265 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region CH58_1265 PF01872 RibD C-terminal domain CH58_1266 PF03477 ATP cone domain CH58_1269 PF01797 Transposase IS200 like CH58_1270 PF01797 Transposase IS200 like CH58_1271 PF02355 Protein export membrane protein CH58_1271 PF07549 SecD/SecF GG Motif CH58_1272 PF02355 Protein export membrane protein CH58_1272 PF07549 SecD/SecF GG Motif CH58_1272 PF13721 SecD export protein N-terminal TM region CH58_1273 PF02699 Preprotein translocase subunit CH58_1274 PF01702 Queuine tRNA-ribosyltransferase CH58_1275 PF02547 Queuosine biosynthesis protein CH58_1276 PF04336 CH58_1276 CH58_1277 PF00578 AhpC/TSA family CH58_1277 PF10417 C-terminal domain of 1-Cys peroxiredoxin CH58_1278 PF01019 Gamma-glutamyltranspeptidase CH58_1279 PF01019 Gamma-glutamyltranspeptidase CH58_128 PF03544 Gram-negative bacterial TonB protein C-terminal CH58_128 PF16031 CH58_128 CH58_1280 PF00106 short chain dehydrogenase CH58_1281 PF00128 Alpha amylase, catalytic domain CH58_1281 PF02903 Alpha amylase, N-terminal ig-like domain CH58_1282 PF00324 Amino acid permease CH58_1283 PF05525 CH58_1283 CH58_1284 PF12849 PBP superfamily domain CH58_1285 PF00512 His Kinase A (phospho-acceptor) domain CH58_1285 PF00989 PAS fold CH58_1285 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH58_1285 PF11808 CH58_1285 CH58_1286 PF00072 Response regulator receiver domain CH58_1286 PF00486 Transcriptional regulatory protein, C terminal CH58_1287 PF00149 Calcineurin-like phosphoesterase CH58_1287 PF12320 Type 5 capsule protein repressor C-terminal domain CH58_1288 PF13476 AAA domain CH58_1289 PF00665 Integrase core domain CH58_1289 PF02796 Helix-turn-helix domain of resolvase CH58_129 PF00872 CH58_129 CH58_1290 PF01695 IstB-like ATP binding protein CH58_1291 PF01695 IstB-like ATP binding protein CH58_1292 PF13558 Putative exonuclease SbcCD, C subunit CH58_1293 PF00480 ROK family CH58_1294 PF04381 Putative exonuclease, RdgC CH58_1295 PF06865 Protein of unknown function (DUF1255) CH58_1296 PF01202 Shikimate kinase CH58_1297 PF00398 Ribosomal RNA adenine dimethylase CH58_1298 PF08241 Methyltransferase domain CH58_13 PF01551 Peptidase family M23 CH58_13 PF04225 Opacity-associated protein A LysM-like domain CH58_13 PF08525 CH58_13 CH58_130 PF03061 Thioesterase superfamily CH58_1300 PF07238 PilZ domain CH58_1300 PF07317 Flagellar regulator YcgR CH58_1301 PF00171 Aldehyde dehydrogenase family CH58_1302 PF00696 Amino acid kinase family CH58_1302 PF01472 PUA domain CH58_1303 PF07417 Transcriptional regulator Crl CH58_1304 PF06500 Alpha/beta hydrolase of unknown function (DUF1100) CH58_1305 PF00156 Phosphoribosyl transferase domain CH58_1306 PF16083 CH58_1306 CH58_1307 PF03067 Chitin binding domain CH58_1309 PF01546 Peptidase family M20/M25/M40 CH58_1309 PF07687 Peptidase dimerisation domain CH58_131 PF04279 CH58_131 CH58_1310 PF00817 impB/mucB/samB family CH58_1310 PF11798 IMS family HHH motif CH58_1310 PF11799 impB/mucB/samB family C-terminal domain CH58_1311 PF03009 Glycerophosphoryl diester phosphodiesterase family CH58_1312 PF04400 CH58_1312 CH58_1313 PF02424 ApbE family CH58_1314 PF00111 2Fe-2S iron-sulfur cluster binding domain CH58_1314 PF00175 Oxidoreductase NAD-binding domain CH58_1314 PF00970 Oxidoreductase FAD-binding domain CH58_1315 PF02508 CH58_1315 CH58_1316 PF02508 CH58_1316 CH58_1317 PF04205 FMN-binding domain CH58_1318 PF03116 CH58_1318 CH58_1319 PF05896 CH58_1319 CH58_1319 PF11973 CH58_1319 CH58_132 PF00916 CH58_132 CH58_1320 PF13230 Glutamine amidotransferases class-II CH58_1321 PF03734 L,D-transpeptidase catalytic domain CH58_1322 PF13580 SIS domain CH58_1323 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CH58_1323 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CH58_1323 PF09317 CH58_1323 CH58_1324 PF03333 Adhesin biosynthesis transcription regulatory protein CH58_1326 PF05860 haemagglutination activity domain CH58_1326 PF13018 CH58_1326 CH58_1327 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB CH58_1327 PF08479 POTRA domain, ShlB-type CH58_1328 PF01546 Peptidase family M20/M25/M40 CH58_133 PF01740 STAS domain CH58_1330 PF00665 Integrase core domain CH58_1330 PF02796 Helix-turn-helix domain of resolvase CH58_1331 PF01695 IstB-like ATP binding protein CH58_1332 PF00266 Aminotransferase class-V CH58_1333 PF00005 ABC transporter CH58_1334 PF00528 Binding-protein-dependent transport system inner membrane component CH58_1335 PF00528 Binding-protein-dependent transport system inner membrane component CH58_1336 PF00497 Bacterial extracellular solute-binding proteins, family 3 CH58_1337 PF01380 SIS domain CH58_1337 PF01418 Helix-turn-helix domain, rpiR family CH58_1338 PF13318 CH58_1338 CH58_1339 PF01425 Amidase CH58_134 PF06790 CH58_134 CH58_1340 PF11533 Protein of unknown function (DUF3225) CH58_1341 PF07690 Major Facilitator Superfamily CH58_1342 PF03591 CH58_1342 CH58_1343 PF05437 CH58_1343 CH58_1344 PF01047 MarR family CH58_1345 PF00529 HlyD family secretion protein CH58_1345 PF16576 CH58_1345 CH58_1346 PF07690 Major Facilitator Superfamily CH58_1347 PF00588 SpoU rRNA Methylase family CH58_1347 PF08032 RNA 2'-O ribose methyltransferase substrate binding CH58_1348 PF00085 Thioredoxin CH58_1349 PF03942 CH58_1349 CH58_135 PF03922 OmpW family CH58_1350 PF00583 Acetyltransferase (GNAT) family CH58_1350 PF13380 CoA binding domain CH58_1350 PF13549 ATP-grasp domain CH58_1350 PF13607 Succinyl-CoA ligase like flavodoxin domain CH58_1351 PF13091 PLD-like domain CH58_1352 PF10043 CH58_1352 CH58_1359 PF00004 ATPase family associated with various cellular activities (AAA) CH58_1359 PF02861 Clp amino terminal domain CH58_1359 PF07724 AAA domain (Cdc48 subfamily) CH58_1359 PF10431 C-terminal, D2-small domain, of ClpB protein CH58_136 PF04972 BON domain CH58_1360 PF02578 Multi-copper polyphenol oxidoreductase laccase CH58_1361 PF00849 RNA pseudouridylate synthase CH58_1361 PF01479 S4 domain CH58_1362 PF13525 Outer membrane lipoprotein CH58_1363 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein CH58_1364 PF01797 Transposase IS200 like CH58_1365 PF01797 Transposase IS200 like CH58_1366 PF00800 Prephenate dehydratase CH58_1366 PF01817 Chorismate mutase type II CH58_1367 PF02796 Helix-turn-helix domain of resolvase CH58_1368 PF00665 Integrase core domain CH58_1369 PF01695 IstB-like ATP binding protein CH58_137 PF00290 Tryptophan synthase alpha chain CH58_1370 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CH58_1371 PF01507 Phosphoadenosine phosphosulfate reductase family CH58_1372 PF00009 Elongation factor Tu GTP binding domain CH58_1373 PF01583 Adenylylsulphate kinase CH58_1374 PF12084 CH58_1374 CH58_1375 PF04977 Septum formation initiator CH58_1376 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase CH58_1377 PF02542 YgbB family CH58_1378 PF01142 tRNA pseudouridine synthase D (TruD) CH58_1379 PF01975 Survival protein SurE CH58_138 PF00291 Pyridoxal-phosphate dependent enzyme CH58_1380 PF01135 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) CH58_1381 PF01476 LysM domain CH58_1381 PF01551 Peptidase family M23 CH58_1382 PF00140 Sigma-70 factor, region 1 CH58_1382 PF04539 Sigma-70 region 3 CH58_1382 PF04542 Sigma-70 region 2 CH58_1382 PF04545 Sigma-70, region 4 CH58_1383 PF00488 MutS domain V CH58_1383 PF01624 MutS domain I CH58_1383 PF05188 MutS domain II CH58_1383 PF05190 MutS family domain IV CH58_1383 PF05192 MutS domain III CH58_1384 PF02502 Ribose/Galactose Isomerase CH58_1385 PF00107 Zinc-binding dehydrogenase CH58_1385 PF08240 Alcohol dehydrogenase GroES-like domain CH58_1386 PF13561 Enoyl-(Acyl carrier protein) reductase CH58_1387 PF02733 Dak1 domain CH58_1388 PF02734 DAK2 domain CH58_1389 PF04198 Putative sugar-binding domain CH58_1389 PF13518 Helix-turn-helix domain CH58_139 PF00218 Indole-3-glycerol phosphate synthase CH58_139 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase CH58_1390 PF02040 CH58_1390 CH58_1391 PF01022 Bacterial regulatory protein, arsR family CH58_1392 PF04703 FaeA-like protein CH58_1394 PF00497 Bacterial extracellular solute-binding proteins, family 3 CH58_1395 PF00034 Cytochrome c CH58_1395 PF03150 Di-haem cytochrome c peroxidase CH58_1395 PF14376 CH58_1395 CH58_1397 PF00593 TonB dependent receptor CH58_1397 PF07715 TonB-dependent Receptor Plug Domain CH58_1398 PF00593 TonB dependent receptor CH58_1399 PF07906 CH58_1399 CH58_14 PF03279 CH58_14 CH58_140 PF00591 Glycosyl transferase family, a/b domain CH58_140 PF02885 Glycosyl transferase family, helical bundle domain CH58_1400 PF00557 Metallopeptidase family M24 CH58_1401 PF11903 CH58_1401 CH58_1402 PF05681 CH58_1402 CH58_1402 PF05683 Fumarase C-terminus CH58_1403 PF00370 FGGY family of carbohydrate kinases, N-terminal domain CH58_1403 PF02782 FGGY family of carbohydrate kinases, C-terminal domain CH58_1404 PF01261 Xylose isomerase-like TIM barrel CH58_1405 PF02653 CH58_1405 CH58_1406 PF02653 CH58_1406 CH58_1407 PF00005 ABC transporter CH58_1408 PF01797 Transposase IS200 like CH58_1409 PF13407 Periplasmic binding protein domain CH58_141 PF00117 Glutamine amidotransferase class-I CH58_1410 PF00455 CH58_1410 CH58_1410 PF08220 DeoR-like helix-turn-helix domain CH58_1411 PF00596 Class II Aldolase and Adducin N-terminal domain CH58_1412 PF00384 Molybdopterin oxidoreductase CH58_1412 PF01568 Molydopterin dinucleotide binding domain CH58_1412 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CH58_1413 PF12800 4Fe-4S binding domain CH58_1413 PF13247 4Fe-4S dicluster domain CH58_1414 PF04976 CH58_1414 CH58_1415 PF02613 Nitrate reductase delta subunit CH58_1416 PF01292 Prokaryotic cytochrome b561 CH58_1417 PF07361 Cytochrome b562 CH58_1418 PF00141 Peroxidase CH58_1419 PF13407 Periplasmic binding protein domain CH58_142 PF00425 chorismate binding enzyme CH58_142 PF04715 Anthranilate synthase component I, N terminal region CH58_1420 PF10054 Predicted periplasmic lipoprotein (DUF2291) CH58_1421 PF00005 ABC transporter CH58_1422 PF02653 CH58_1422 CH58_1423 PF00456 Transketolase, thiamine diphosphate binding domain CH58_1424 PF02779 Transketolase, pyrimidine binding domain CH58_1424 PF02780 Transketolase, C-terminal domain CH58_1425 PF00370 FGGY family of carbohydrate kinases, N-terminal domain CH58_1425 PF02782 FGGY family of carbohydrate kinases, C-terminal domain CH58_1426 PF02952 L-fucose isomerase, C-terminal domain CH58_1427 PF01047 MarR family CH58_1427 PF04198 Putative sugar-binding domain CH58_1428 PF07690 Major Facilitator Superfamily CH58_1429 PF02464 Competence-damaged protein CH58_143 PF02811 PHP domain CH58_1430 PF00154 recA bacterial DNA recombination protein CH58_1431 PF02631 RecX family CH58_1432 PF01411 tRNA synthetases class II (A) CH58_1432 PF02272 DHHA1 domain CH58_1432 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain CH58_1433 PF02599 Global regulator protein family CH58_1438 PF13419 Haloacid dehalogenase-like hydrolase CH58_144 PF01300 Telomere recombination CH58_1440 PF04262 Glutamate-cysteine ligase CH58_1441 PF02664 S-Ribosylhomocysteinase (LuxS) CH58_1442 PF01797 Transposase IS200 like CH58_1443 PF00571 CBS domain CH58_1443 PF01595 CH58_1443 CH58_1443 PF03471 Transporter associated domain CH58_1444 PF01578 CH58_1444 CH58_1445 PF00448 SRP54-type protein, GTPase domain CH58_1445 PF02881 SRP54-type protein, helical bundle domain CH58_1445 PF02978 Signal peptide binding domain CH58_1446 PF00886 Ribosomal protein S16 CH58_1447 PF01782 RimM N-terminal domain CH58_1447 PF05239 PRC-barrel domain CH58_1448 PF01746 tRNA (Guanine-1)-methyltransferase CH58_1449 PF01245 Ribosomal protein L19 CH58_145 PF00849 RNA pseudouridylate synthase CH58_145 PF01479 S4 domain CH58_1450 PF01797 Transposase IS200 like CH58_1451 PF04338 Protein of unknown function, DUF481 CH58_1452 PF03605 CH58_1452 CH58_1453 PF03605 CH58_1453 CH58_1454 PF03605 CH58_1454 CH58_1455 PF00072 Response regulator receiver domain CH58_1455 PF04397 LytTr DNA-binding domain CH58_1456 PF00793 DAHP synthetase I family CH58_1457 PF01817 Chorismate mutase type II CH58_1457 PF02153 Prephenate dehydrogenase CH58_1458 PF00800 Prephenate dehydratase CH58_1459 PF01695 IstB-like ATP binding protein CH58_146 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP CH58_146 PF12557 Cob(I)alamin adenosyltransferase N terminal CH58_1460 PF01695 IstB-like ATP binding protein CH58_1462 PF00665 Integrase core domain CH58_1462 PF02796 Helix-turn-helix domain of resolvase CH58_1463 PF10414 Sirohaem synthase dimerisation region CH58_1463 PF13241 Putative NAD(P)-binding CH58_1463 PF14824 Sirohaem biosynthesis protein central CH58_1465 PF07927 YcfA-like protein CH58_1466 PF15919 CH58_1466 CH58_1467 PF01507 Phosphoadenosine phosphosulfate reductase family CH58_1468 PF01507 Phosphoadenosine phosphosulfate reductase family CH58_1469 PF01077 Nitrite and sulphite reductase 4Fe-4S domain CH58_1469 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain CH58_147 PF00106 short chain dehydrogenase CH58_1470 PF00175 Oxidoreductase NAD-binding domain CH58_1470 PF00258 Flavodoxin CH58_1470 PF00667 FAD binding domain CH58_1471 PF01242 6-pyruvoyl tetrahydropterin synthase CH58_1472 PF04055 Radical SAM superfamily CH58_1472 PF13394 4Fe-4S single cluster domain CH58_1473 PF00080 Copper/zinc superoxide dismutase (SODC) CH58_1474 PF00113 Enolase, C-terminal TIM barrel domain CH58_1474 PF03952 Enolase, N-terminal domain CH58_1475 PF00117 Glutamine amidotransferase class-I CH58_1475 PF06418 CTP synthase N-terminus CH58_1476 PF03819 MazG nucleotide pyrophosphohydrolase domain CH58_1477 PF02824 TGS domain CH58_1477 PF04607 Region found in RelA / SpoT proteins CH58_1477 PF13291 ACT domain CH58_1477 PF13328 HD domain CH58_1478 PF00072 Response regulator receiver domain CH58_1478 PF00512 His Kinase A (phospho-acceptor) domain CH58_1478 PF01627 Hpt domain CH58_1478 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH58_1478 PF09984 CH58_1478 CH58_1479 PF00595 PDZ domain (Also known as DHR or GLGF) CH58_1479 PF13180 PDZ domain CH58_1479 PF13365 Trypsin-like peptidase domain CH58_148 PF01343 Peptidase family S49 CH58_148 PF08496 CH58_148 CH58_1480 PF01966 HD domain CH58_1480 PF13286 Phosphohydrolase-associated domain CH58_1481 PF01048 Phosphorylase superfamily CH58_1482 PF01497 Periplasmic binding protein CH58_1483 PF03458 CH58_1483 CH58_1484 PF01521 Iron-sulphur cluster biosynthesis CH58_1485 PF00654 Voltage gated chloride channel CH58_1486 PF00202 Aminotransferase class-III CH58_1487 PF01032 FecCD transport family CH58_1488 PF01497 Periplasmic binding protein CH58_1489 PF00005 ABC transporter CH58_149 PF10692 Protein of unknown function (DUF2498) CH58_1490 PF00905 Penicillin binding protein transpeptidase domain CH58_1490 PF00912 Transglycosylase CH58_1490 PF14812 CH58_1490 CH58_1490 PF14814 Bifunctional transglycosylase second domain CH58_1491 PF00270 DEAD/DEAH box helicase CH58_1491 PF00271 Helicase conserved C-terminal domain CH58_1491 PF04408 Helicase associated domain (HA2) CH58_1491 PF08482 CH58_1491 CH58_1492 PF02834 LigT like Phosphoesterase CH58_1493 PF03749 Sugar fermentation stimulation protein CH58_1494 PF01258 Prokaryotic dksA/traR C4-type zinc finger CH58_1495 PF00749 tRNA synthetases class I (E and Q), catalytic domain CH58_1496 PF01743 Poly A polymerase head domain CH58_1496 PF12626 Polymerase A arginine-rich C-terminus CH58_1496 PF12627 Probable RNA and SrmB- binding site of polymerase A CH58_1497 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) CH58_1498 PF02548 Ketopantoate hydroxymethyltransferase CH58_1499 PF02569 Pantoate-beta-alanine ligase CH58_15 PF00224 Pyruvate kinase, barrel domain CH58_15 PF02887 Pyruvate kinase, alpha/beta domain CH58_1500 PF02261 Aspartate decarboxylase CH58_1501 PF01522 Polysaccharide deacetylase CH58_1503 PF01061 CH58_1503 CH58_1504 PF00005 ABC transporter CH58_1505 PF00484 Carbonic anhydrase CH58_1506 PF00156 Phosphoribosyl transferase domain CH58_1507 PF00394 Multicopper oxidase CH58_1507 PF07731 Multicopper oxidase CH58_1507 PF07732 Multicopper oxidase CH58_1507 PF10518 TAT (twin-arginine translocation) pathway signal sequence CH58_1508 PF09691 Bacterial chaperone lipoprotein (PulS_OutS) CH58_1509 PF01564 Spermine/spermidine synthase CH58_1509 PF17284 CH58_1509 CH58_151 PF01131 DNA topoisomerase CH58_151 PF01396 CH58_151 CH58_151 PF01751 Toprim domain CH58_151 PF08272 Topoisomerase I zinc-ribbon-like CH58_1510 PF02675 S-adenosylmethionine decarboxylase CH58_1511 PF00892 EamA-like transporter family CH58_1512 PF06062 CH58_1512 CH58_1513 PF00330 Aconitase family (aconitate hydratase) CH58_1513 PF06434 Aconitate hydratase 2 N-terminus CH58_1513 PF11791 Aconitate B N-terminal domain CH58_1514 PF01797 Transposase IS200 like CH58_1515 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CH58_1515 PF07992 Pyridine nucleotide-disulphide oxidoreductase CH58_1516 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) CH58_1516 PF00364 Biotin-requiring enzyme CH58_1516 PF02817 e3 binding domain CH58_1517 PF00456 Transketolase, thiamine diphosphate binding domain CH58_1518 PF00392 Bacterial regulatory proteins, gntR family CH58_1518 PF07729 FCD domain CH58_1519 PF00324 Amino acid permease CH58_152 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH58_152 PF03466 LysR substrate binding domain CH58_1520 PF17113 CH58_1520 CH58_1521 PF01510 N-acetylmuramoyl-L-alanine amidase CH58_1522 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain CH58_1522 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain CH58_1523 PF07963 Prokaryotic N-terminal methylation motif CH58_1524 PF00437 Type II/IV secretion system protein CH58_1525 PF00482 Type II secretion system (T2SS), protein F CH58_1526 PF00478 IMP dehydrogenase / GMP reductase domain CH58_1527 PF01121 Dephospho-CoA kinase CH58_1528 PF07072 Protein of unknown function (DUF1342) CH58_1529 PF03884 Domain of unknown function (DUF329) CH58_1530 PF00665 Integrase core domain CH58_1530 PF02796 Helix-turn-helix domain of resolvase CH58_1531 PF01695 IstB-like ATP binding protein CH58_1532 PF13589 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH58_1533 PF03235 CH58_1533 CH58_1533 PF07510 CH58_1533 CH58_1534 PF00589 Phage integrase family CH58_1534 PF13356 Domain of unknown function (DUF4102) CH58_1536 PF03739 CH58_1536 CH58_1537 PF03739 CH58_1537 CH58_1538 PF00883 Cytosol aminopeptidase family, catalytic domain CH58_1538 PF02789 Cytosol aminopeptidase family, N-terminal domain CH58_1539 PF04364 DNA polymerase III chi subunit, HolC CH58_154 PF00330 Aconitase family (aconitate hydratase) CH58_154 PF00694 Aconitase C-terminal domain CH58_1540 PF00133 tRNA synthetases class I (I, L, M and V) CH58_1540 PF08264 Anticodon-binding domain of tRNA CH58_1540 PF10458 Valyl tRNA synthetase tRNA binding arm CH58_1541 PF00583 Acetyltransferase (GNAT) family CH58_1542 PF06877 Regulator of ribonuclease activity B CH58_1543 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain CH58_1543 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain CH58_1544 PF04074 Domain of unknown function (DUF386) CH58_1547 PF00528 Binding-protein-dependent transport system inner membrane component CH58_1548 PF00528 Binding-protein-dependent transport system inner membrane component CH58_1548 PF12911 CH58_1548 CH58_1549 PF00005 ABC transporter CH58_155 PF00925 GTP cyclohydrolase II CH58_1550 PF00005 ABC transporter CH58_1551 PF03477 ATP cone domain CH58_1551 PF13597 Anaerobic ribonucleoside-triphosphate reductase CH58_1552 PF13353 4Fe-4S single cluster domain CH58_1554 PF00392 Bacterial regulatory proteins, gntR family CH58_1554 PF07702 UTRA domain CH58_1555 PF06754 CH58_1555 CH58_1556 PF05845 Bacterial phosphonate metabolism protein (PhnH) CH58_1557 PF05861 CH58_1557 CH58_1558 PF06007 CH58_1558 CH58_1559 PF00005 ABC transporter CH58_156 PF01569 PAP2 superfamily CH58_1560 PF00005 ABC transporter CH58_1561 PF07969 Amidohydrolase family CH58_1562 PF13238 AAA domain CH58_1563 PF12706 Beta-lactamase superfamily domain CH58_1566 PF05426 Alginate lyase CH58_1567 PF00005 ABC transporter CH58_1567 PF08402 TOBE domain CH58_1568 PF00528 Binding-protein-dependent transport system inner membrane component CH58_1569 PF00528 Binding-protein-dependent transport system inner membrane component CH58_157 PF06305 CH58_157 CH58_1570 PF01547 Bacterial extracellular solute-binding protein CH58_1571 PF05426 Alginate lyase CH58_1572 PF05426 Alginate lyase CH58_1572 PF07940 Heparinase II/III-like protein CH58_1573 PF01541 GIY-YIG catalytic domain CH58_1574 PF00583 Acetyltransferase (GNAT) family CH58_1575 PF02036 SCP-2 sterol transfer family CH58_1576 PF01136 CH58_1576 CH58_1577 PF01136 CH58_1577 CH58_1578 PF02321 Outer membrane efflux protein CH58_1579 PF00873 AcrB/AcrD/AcrF family CH58_158 PF13176 Tetratricopeptide repeat CH58_158 PF13432 Tetratricopeptide repeat CH58_1580 PF16576 CH58_1580 CH58_1582 PF00296 Luciferase-like monooxygenase CH58_1583 PF01381 Helix-turn-helix CH58_1584 PF05973 CH58_1584 CH58_1585 PF00270 DEAD/DEAH box helicase CH58_1585 PF00271 Helicase conserved C-terminal domain CH58_1585 PF03880 DbpA RNA binding domain CH58_1585 PF12343 CH58_1585 CH58_1586 PF07719 Tetratricopeptide repeat CH58_1586 PF13181 Tetratricopeptide repeat CH58_1587 PF00013 KH domain CH58_1587 PF00575 S1 RNA binding domain CH58_1587 PF01138 3' exoribonuclease family, domain 1 CH58_1587 PF03725 3' exoribonuclease family, domain 2 CH58_1587 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain CH58_1588 PF00665 Integrase core domain CH58_1588 PF13276 CH58_1588 CH58_1590 PF13518 Helix-turn-helix domain CH58_1591 PF02423 Ornithine cyclodeaminase/mu-crystallin family CH58_1592 PF00291 Pyridoxal-phosphate dependent enzyme CH58_1594 PF07676 WD40-like Beta Propeller Repeat CH58_1595 PF07119 CH58_1595 CH58_1596 PF00011 Hsp20/alpha crystallin family CH58_1597 PF00011 Hsp20/alpha crystallin family CH58_1598 PF02080 TrkA-C domain CH58_1598 PF06826 CH58_1598 CH58_1599 PF00155 Aminotransferase class I and II CH58_16 PF01380 SIS domain CH58_16 PF01418 Helix-turn-helix domain, rpiR family CH58_160 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family CH58_1601 PF00128 Alpha amylase, catalytic domain CH58_1602 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CH58_1602 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CH58_1604 PF00691 OmpA family CH58_1604 PF13488 CH58_1604 CH58_1605 PF13673 Acetyltransferase (GNAT) domain CH58_1606 PF03352 Methyladenine glycosylase CH58_1608 PF02091 Glycyl-tRNA synthetase alpha subunit CH58_1609 PF02092 CH58_1609 CH58_1609 PF05746 DALR anticodon binding domain CH58_161 PF01253 Translation initiation factor SUI1 CH58_1610 PF11254 CH58_1610 CH58_1611 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 CH58_1611 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit CH58_1611 PF02378 Phosphotransferase system, EIIC CH58_1612 PF01232 Mannitol dehydrogenase Rossmann domain CH58_1612 PF08125 Mannitol dehydrogenase C-terminal domain CH58_1613 PF05068 Mannitol repressor CH58_1615 PF10928 Protein of unknown function (DUF2810) CH58_1616 PF10517 CH58_1616 CH58_1619 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CH58_162 PF05433 CH58_162 CH58_1620 PF01695 IstB-like ATP binding protein CH58_1621 PF00665 Integrase core domain CH58_1621 PF02796 Helix-turn-helix domain of resolvase CH58_1622 PF00672 HAMP domain CH58_1622 PF16591 CH58_1622 CH58_1623 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain CH58_1623 PF02777 Iron/manganese superoxide dismutases, C-terminal domain CH58_1624 PF02634 FdhD/NarQ family CH58_1625 PF00384 Molybdopterin oxidoreductase CH58_1625 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CH58_1626 PF00384 Molybdopterin oxidoreductase CH58_1626 PF01568 Molydopterin dinucleotide binding domain CH58_1627 PF09163 Formate dehydrogenase N, transmembrane CH58_1627 PF13247 4Fe-4S dicluster domain CH58_1628 PF01292 Prokaryotic cytochrome b561 CH58_1629 PF04216 Protein involved in formate dehydrogenase formation CH58_163 PF00596 Class II Aldolase and Adducin N-terminal domain CH58_1630 PF03841 L-seryl-tRNA selenium transferase CH58_1630 PF12390 CH58_1630 CH58_1631 PF00009 Elongation factor Tu GTP binding domain CH58_1631 PF09106 Elongation factor SelB, winged helix CH58_1631 PF09107 Elongation factor SelB, winged helix CH58_1632 PF01526 CH58_1632 CH58_1634 PF13988 CH58_1634 CH58_1637 PF07690 Major Facilitator Superfamily CH58_1638 PF00665 Integrase core domain CH58_1638 PF13276 CH58_1638 CH58_1639 PF13518 Helix-turn-helix domain CH58_164 PF09932 CH58_164 CH58_1642 PF05656 CH58_1642 CH58_1645 PF00691 OmpA family CH58_1645 PF13677 CH58_1645 CH58_1646 PF01618 CH58_1646 CH58_1647 PF04539 Sigma-70 region 3 CH58_1647 PF04542 Sigma-70 region 2 CH58_1647 PF04545 Sigma-70, region 4 CH58_1648 PF03748 CH58_1648 CH58_1649 PF02120 Flagellar hook-length control protein FliK CH58_165 PF00923 Transaldolase CH58_1651 PF02561 Flagellar protein FliS CH58_1652 PF02465 CH58_1652 CH58_1652 PF07195 CH58_1652 CH58_1652 PF07196 Flagellin hook IN motif CH58_1653 PF00669 Bacterial flagellin N-terminal helical region CH58_1653 PF00700 Bacterial flagellin C-terminal helical region CH58_1654 PF00669 Bacterial flagellin N-terminal helical region CH58_1654 PF00700 Bacterial flagellin C-terminal helical region CH58_1655 PF00669 Bacterial flagellin N-terminal helical region CH58_1655 PF00700 Bacterial flagellin C-terminal helical region CH58_1656 PF00486 Transcriptional regulatory protein, C terminal CH58_1659 PF00669 Bacterial flagellin N-terminal helical region CH58_166 PF04328 CH58_166 CH58_1660 PF00460 Flagella basal body rod protein CH58_1660 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CH58_1661 PF10135 CH58_1661 CH58_1662 PF02119 CH58_1662 CH58_1663 PF02107 CH58_1663 CH58_1664 PF00460 Flagella basal body rod protein CH58_1664 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CH58_1665 PF00460 Flagella basal body rod protein CH58_1665 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CH58_1666 PF00460 Flagella basal body rod protein CH58_1666 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CH58_1666 PF07559 Flagellar basal body protein FlaE CH58_1667 PF03963 CH58_1667 CH58_1667 PF13860 FlgD Ig-like domain CH58_1667 PF13861 FlgD Tudor-like domain CH58_1668 PF00460 Flagella basal body rod protein CH58_1668 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CH58_1669 PF00460 Flagella basal body rod protein CH58_167 PF02554 CH58_167 CH58_167 PF13722 CH58_167 CH58_1670 PF13144 SAF-like CH58_1671 PF04316 Anti-sigma-28 factor, FlgM CH58_1672 PF05130 FlgN protein CH58_1673 PF02050 Flagellar FliJ protein CH58_1674 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CH58_1675 PF02108 CH58_1675 CH58_1675 PF09811 CH58_1675 CH58_1676 PF01706 FliG C-terminal domain CH58_1676 PF14841 FliG middle domain CH58_1677 PF00665 Integrase core domain CH58_1677 PF02796 Helix-turn-helix domain of resolvase CH58_1679 PF01695 IstB-like ATP binding protein CH58_168 PF00575 S1 RNA binding domain CH58_168 PF00773 RNB domain CH58_168 PF08206 Ribonuclease B OB domain CH58_1680 PF14842 FliG N-terminal domain CH58_1681 PF01514 Secretory protein of YscJ/FliF family CH58_1681 PF08345 CH58_1681 CH58_1682 PF02049 CH58_1682 CH58_1683 PF00158 Sigma-54 interaction domain CH58_1683 PF02954 Bacterial regulatory protein, Fis family CH58_1685 PF01052 Surface presentation of antigens (SPOA) CH58_1686 PF01052 Surface presentation of antigens (SPOA) CH58_1687 PF00813 CH58_1687 CH58_1688 PF01313 CH58_1688 CH58_1689 PF01311 CH58_1689 CH58_169 PF07690 Major Facilitator Superfamily CH58_1690 PF01312 FlhB HrpN YscU SpaS Family CH58_1691 PF00771 FHIPEP family CH58_1692 PF11153 CH58_1692 CH58_1694 PF01497 Periplasmic binding protein CH58_1695 PF00419 Fimbrial protein CH58_1696 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain CH58_1696 PF02753 Pili assembly chaperone PapD, C-terminal domain CH58_1697 PF00577 Outer membrane usher protein CH58_1697 PF13953 PapC C-terminal domain CH58_1697 PF13954 PapC N-terminal domain CH58_1698 PF01797 Transposase IS200 like CH58_1699 PF01478 Type IV leader peptidase family CH58_17 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain CH58_17 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain CH58_170 PF01370 NAD dependent epimerase/dehydratase family CH58_1701 PF13629 CH58_1701 CH58_1702 PF00263 CH58_1702 CH58_1705 PF00437 Type II/IV secretion system protein CH58_1706 PF00482 Type II secretion system (T2SS), protein F CH58_1707 PF00482 Type II secretion system (T2SS), protein F CH58_1709 PF07811 CH58_1709 CH58_171 PF00633 Helix-hairpin-helix motif CH58_171 PF00730 HhH-GPD superfamily base excision DNA repair protein CH58_171 PF10576 Iron-sulfur binding domain of endonuclease III CH58_1710 PF16964 CH58_1710 CH58_1712 PF02472 Biopolymer transport protein ExbD/TolR CH58_1714 PF01618 CH58_1714 CH58_1715 PF01053 Cys/Met metabolism PLP-dependent enzyme CH58_1716 PF09335 CH58_1716 CH58_1717 PF06719 CH58_1717 CH58_1717 PF12833 Helix-turn-helix domain CH58_1718 PF00465 Iron-containing alcohol dehydrogenase CH58_1719 PF00248 Aldo/keto reductase family CH58_172 PF02508 CH58_172 CH58_1720 PF11842 CH58_1720 CH58_1721 PF04055 Radical SAM superfamily CH58_1721 PF08497 CH58_1721 CH58_1722 PF07731 Multicopper oxidase CH58_1722 PF07732 Multicopper oxidase CH58_1723 PF01553 Acyltransferase CH58_1724 PF00521 DNA gyrase/topoisomerase IV, subunit A CH58_1724 PF03989 DNA gyrase C-terminal domain, beta-propeller CH58_1725 PF02525 Flavodoxin-like fold CH58_1726 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH58_1726 PF03466 LysR substrate binding domain CH58_1727 PF00204 DNA gyrase B CH58_1727 PF00986 DNA gyrase B subunit, carboxyl terminus CH58_1727 PF01751 Toprim domain CH58_1727 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH58_1728 PF05728 Uncharacterised protein family (UPF0227) CH58_1729 PF00149 Calcineurin-like phosphoesterase CH58_173 PF04205 FMN-binding domain CH58_1730 PF06853 CH58_1730 CH58_1731 PF00293 NUDIX domain CH58_1732 PF02321 Outer membrane efflux protein CH58_1734 PF06693 CH58_1734 CH58_1735 PF03738 Glutathionylspermidine synthase preATP-grasp CH58_1736 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase CH58_1737 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase CH58_1739 PF04380 CH58_1739 CH58_174 PF03116 CH58_174 CH58_1740 PF13520 Amino acid permease CH58_1741 PF00294 pfkB family carbohydrate kinase CH58_1741 PF01467 Cytidylyltransferase CH58_1742 PF03710 Glutamate-ammonia ligase adenylyltransferase CH58_1742 PF08335 GlnD PII-uridylyltransferase CH58_1743 PF01928 CYTH domain CH58_1744 PF08239 Bacterial SH3 domain CH58_1745 PF01743 Poly A polymerase head domain CH58_1745 PF01966 HD domain CH58_1745 PF12627 Probable RNA and SrmB- binding site of polymerase A CH58_1746 PF02673 CH58_1746 CH58_1747 PF02152 Dihydroneopterin aldolase CH58_1748 PF02660 CH58_1748 CH58_1749 PF00814 Glycoprotease family CH58_175 PF06445 GyrI-like small molecule binding domain CH58_175 PF12833 Helix-turn-helix domain CH58_1750 PF01165 Ribosomal protein S21 CH58_1751 PF01807 CHC2 zinc finger CH58_1751 PF08275 DNA primase catalytic core, N-terminal domain CH58_1751 PF08278 DNA primase DnaG DnaB-binding CH58_1751 PF10410 DnaB-helicase binding domain of primase CH58_1751 PF13155 Toprim-like CH58_1752 PF00140 Sigma-70 factor, region 1 CH58_1752 PF03979 Sigma-70 factor, region 1 CH58_1752 PF04539 Sigma-70 region 3 CH58_1752 PF04542 Sigma-70 region 2 CH58_1752 PF04545 Sigma-70, region 4 CH58_1752 PF04546 Sigma-70, non-essential region CH58_1755 PF03592 Terminase small subunit CH58_176 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit CH58_176 PF10531 SLBB domain CH58_176 PF13237 4Fe-4S dicluster domain CH58_176 PF13375 RnfC Barrel sandwich hybrid domain CH58_1760 PF01695 IstB-like ATP binding protein CH58_1762 PF00665 Integrase core domain CH58_1762 PF02796 Helix-turn-helix domain of resolvase CH58_1763 PF02661 Fic/DOC family CH58_1766 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH58_1766 PF03466 LysR substrate binding domain CH58_1768 PF08803 Putative mono-oxygenase ydhR CH58_1769 PF01042 Endoribonuclease L-PSP CH58_177 PF04060 Putative Fe-S cluster CH58_177 PF14697 4Fe-4S dicluster domain CH58_1770 PF01042 Endoribonuclease L-PSP CH58_1771 PF08348 CH58_1771 CH58_1772 PF10604 Polyketide cyclase / dehydrase and lipid transport CH58_1773 PF03553 CH58_1773 CH58_1774 PF00155 Aminotransferase class I and II CH58_1776 PF17090 CH58_1776 CH58_1777 PF13437 HlyD family secretion protein CH58_1777 PF13533 Biotin-lipoyl like CH58_1778 PF04632 CH58_1778 CH58_1779 PF02321 Outer membrane efflux protein CH58_178 PF02508 CH58_178 CH58_1780 PF00933 Glycosyl hydrolase family 3 N terminal domain CH58_1780 PF01915 Glycosyl hydrolase family 3 C-terminal domain CH58_1780 PF14310 Fibronectin type III-like domain CH58_1782 PF00528 Binding-protein-dependent transport system inner membrane component CH58_1783 PF00528 Binding-protein-dependent transport system inner membrane component CH58_1784 PF01547 Bacterial extracellular solute-binding protein CH58_1785 PF00356 Bacterial regulatory proteins, lacI family CH58_1785 PF13377 Periplasmic binding protein-like domain CH58_1787 PF00005 ABC transporter CH58_1787 PF08402 TOBE domain CH58_1788 PF10091 Putative glucoamylase CH58_1789 PF13557 CH58_1789 CH58_179 PF10754 CH58_179 CH58_1790 PF03797 Autotransporter beta-domain CH58_1792 PF15599 CH58_1792 CH58_1795 PF04829 CH58_1795 CH58_1795 PF05860 haemagglutination activity domain CH58_1795 PF13018 CH58_1795 CH58_1795 PF13332 CH58_1795 CH58_1796 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB CH58_1796 PF08479 POTRA domain, ShlB-type CH58_1796 PF17287 CH58_1796 CH58_1797 PF00092 von Willebrand factor type A domain CH58_1798 PF02342 TerD domain CH58_1799 PF00092 von Willebrand factor type A domain CH58_180 PF00005 ABC transporter CH58_180 PF00664 ABC transporter transmembrane region CH58_1800 PF00092 von Willebrand factor type A domain CH58_1800 PF15616 CH58_1800 CH58_1801 PF13672 Protein phosphatase 2C CH58_1802 PF00069 Protein kinase domain CH58_1803 PF03729 CH58_1803 CH58_1804 PF00724 NADH:flavin oxidoreductase / NADH oxidase family CH58_1804 PF07992 Pyridine nucleotide-disulphide oxidoreductase CH58_1805 PF05175 Methyltransferase small domain CH58_1806 PF03212 Pertactin CH58_1806 PF03797 Autotransporter beta-domain CH58_1807 PF01863 Protein of unknown function DUF45 CH58_1808 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CH58_1809 PF00375 Sodium:dicarboxylate symporter family CH58_181 PF13533 Biotin-lipoyl like CH58_1811 PF01797 Transposase IS200 like CH58_1812 PF10688 CH58_1812 CH58_1813 PF04295 CH58_1813 CH58_1813 PF08666 SAF domain CH58_1814 PF08125 Mannitol dehydrogenase C-terminal domain CH58_1815 PF01232 Mannitol dehydrogenase Rossmann domain CH58_1816 PF02614 Glucuronate isomerase CH58_1817 PF07690 Major Facilitator Superfamily CH58_1818 PF00392 Bacterial regulatory proteins, gntR family CH58_1818 PF07729 FCD domain CH58_182 PF00529 HlyD family secretion protein CH58_1820 PF09335 CH58_1820 CH58_1821 PF13721 SecD export protein N-terminal TM region CH58_1822 PF06476 CH58_1822 CH58_1823 PF05957 CH58_1823 CH58_1824 PF07332 CH58_1824 CH58_1825 PF13997 CH58_1825 CH58_1826 PF07681 CH58_1826 CH58_183 PF00005 ABC transporter CH58_183 PF00664 ABC transporter transmembrane region CH58_183 PF03412 Peptidase C39 family CH58_1831 PF01695 IstB-like ATP binding protein CH58_1832 PF00132 Bacterial transferase hexapeptide (six repeats) CH58_1833 PF01488 Shikimate / quinate 5-dehydrogenase CH58_1833 PF08501 Shikimate dehydrogenase substrate binding domain CH58_1834 PF01300 Telomere recombination CH58_1835 PF01396 CH58_1835 CH58_1836 PF04361 CH58_1836 CH58_1837 PF02481 DNA recombination-mediator protein A CH58_1838 PF01327 Polypeptide deformylase CH58_1839 PF00551 Formyl transferase CH58_1839 PF02911 Formyl transferase, C-terminal domain CH58_1840 PF01029 NusB family CH58_1840 PF01189 NOL1/NOP2/sun family CH58_1841 PF02080 TrkA-C domain CH58_1841 PF02254 TrkA-N domain CH58_1842 PF01741 Large-conductance mechanosensitive channel, MscL CH58_1843 PF03889 CH58_1843 CH58_1844 PF13411 MerR HTH family regulatory protein CH58_1845 PF01196 Ribosomal protein L17 CH58_1846 PF01000 RNA polymerase Rpb3/RpoA insert domain CH58_1846 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain CH58_1846 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain CH58_1847 PF00163 Ribosomal protein S4/S9 N-terminal domain CH58_1847 PF01479 S4 domain CH58_1848 PF00411 Ribosomal protein S11 CH58_1849 PF00416 Ribosomal protein S13/S18 CH58_185 PF02610 L-arabinose isomerase CH58_185 PF11762 L-arabinose isomerase C-terminal domain CH58_1850 PF00444 Ribosomal protein L36 CH58_1851 PF00344 SecY translocase CH58_1852 PF00828 Ribosomal protein L18e/L15 CH58_1853 PF00327 Ribosomal protein L30p/L7e CH58_1854 PF00333 Ribosomal protein S5, N-terminal domain CH58_1854 PF03719 Ribosomal protein S5, C-terminal domain CH58_1855 PF00861 Ribosomal L18p/L5e family CH58_1856 PF00347 Ribosomal protein L6 CH58_1857 PF00410 Ribosomal protein S8 CH58_1858 PF00253 Ribosomal protein S14p/S29e CH58_1859 PF00281 Ribosomal protein L5 CH58_1859 PF00673 ribosomal L5P family C-terminus CH58_186 PF00370 FGGY family of carbohydrate kinases, N-terminal domain CH58_186 PF02782 FGGY family of carbohydrate kinases, C-terminal domain CH58_1860 PF00467 KOW motif CH58_1860 PF17136 CH58_1860 CH58_1861 PF00238 Ribosomal protein L14p/L23e CH58_1862 PF00366 Ribosomal protein S17 CH58_1863 PF00831 Ribosomal L29 protein CH58_1864 PF00252 Ribosomal protein L16p/L10e CH58_1865 PF00189 Ribosomal protein S3, C-terminal domain CH58_1865 PF07650 KH domain CH58_1866 PF00237 Ribosomal protein L22p/L17e CH58_1867 PF00203 Ribosomal protein S19 CH58_1868 PF00181 Ribosomal Proteins L2, RNA binding domain CH58_1868 PF03947 Ribosomal Proteins L2, C-terminal domain CH58_1869 PF00276 Ribosomal protein L23 CH58_187 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family CH58_1870 PF00573 Ribosomal protein L4/L1 family CH58_1871 PF00297 Ribosomal protein L3 CH58_1872 PF00338 Ribosomal protein S10p/S20e CH58_1873 PF00210 Ferritin-like domain CH58_1874 PF04324 BFD-like [2Fe-2S] binding domain CH58_1875 PF00665 Integrase core domain CH58_1875 PF02796 Helix-turn-helix domain of resolvase CH58_1876 PF01695 IstB-like ATP binding protein CH58_1877 PF01797 Transposase IS200 like CH58_1878 PF00009 Elongation factor Tu GTP binding domain CH58_1878 PF03143 Elongation factor Tu C-terminal domain CH58_1878 PF03144 Elongation factor Tu domain 2 CH58_1879 PF00009 Elongation factor Tu GTP binding domain CH58_1879 PF00679 Elongation factor G C-terminus CH58_1879 PF03144 Elongation factor Tu domain 2 CH58_1879 PF03764 Elongation factor G, domain IV CH58_1879 PF14492 Elongation Factor G, domain II CH58_188 PF00005 ABC transporter CH58_1880 PF00177 Ribosomal protein S7p/S5e CH58_1881 PF00164 Ribosomal protein S12/S23 CH58_1882 PF04077 DsrH like protein CH58_1883 PF02635 DsrE/DsrF-like family CH58_1884 PF02635 DsrE/DsrF-like family CH58_1885 PF08348 CH58_1885 CH58_1885 PF13309 CH58_1885 CH58_1886 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CH58_1886 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase CH58_1887 PF04102 SlyX CH58_1888 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CH58_1889 PF09526 CH58_1889 CH58_189 PF02653 CH58_189 CH58_1890 PF00999 Sodium/hydrogen exchanger family CH58_1890 PF02254 TrkA-N domain CH58_1891 PF02525 Flavodoxin-like fold CH58_1892 PF00005 ABC transporter CH58_1893 PF00005 ABC transporter CH58_1893 PF12848 ABC transporter CH58_1894 PF00535 Glycosyl transferase family 2 CH58_1895 PF01075 Glycosyltransferase family 9 (heptosyltransferase) CH58_1896 PF02668 Taurine catabolism dioxygenase TauD, TfdA family CH58_1897 PF00528 Binding-protein-dependent transport system inner membrane component CH58_1898 PF00005 ABC transporter CH58_1899 PF04069 Substrate binding domain of ABC-type glycine betaine transport system CH58_19 PF01081 KDPG and KHG aldolase CH58_190 PF02311 AraC-like ligand binding domain CH58_190 PF12833 Helix-turn-helix domain CH58_1900 PF01810 CH58_1900 CH58_1901 PF00561 alpha/beta hydrolase fold CH58_1902 PF06794 Uncharacterised protein family (UPF0270) CH58_1903 PF00485 Phosphoribulokinase / Uridine kinase family CH58_1904 PF06836 CH58_1904 CH58_1905 PF02566 OsmC-like protein CH58_1906 PF00027 Cyclic nucleotide-binding domain CH58_1906 PF00325 Bacterial regulatory proteins, crp family CH58_1907 PF12805 CH58_1907 CH58_1907 PF13515 CH58_1907 CH58_1908 PF00202 Aminotransferase class-III CH58_1909 PF00117 Glutamine amidotransferase class-I CH58_191 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CH58_191 PF02894 Oxidoreductase family, C-terminal alpha/beta domain CH58_1910 PF05872 CH58_1910 CH58_1911 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD CH58_1912 PF02056 Family 4 glycosyl hydrolase CH58_1912 PF11975 Family 4 glycosyl hydrolase C-terminal domain CH58_1913 PF00356 Bacterial regulatory proteins, lacI family CH58_1913 PF13377 Periplasmic binding protein-like domain CH58_1914 PF00593 TonB dependent receptor CH58_1914 PF07715 TonB-dependent Receptor Plug Domain CH58_1915 PF07690 Major Facilitator Superfamily CH58_1916 PF07969 Amidohydrolase family CH58_1917 PF01077 Nitrite and sulphite reductase 4Fe-4S domain CH58_1917 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain CH58_1917 PF04324 BFD-like [2Fe-2S] binding domain CH58_1917 PF07992 Pyridine nucleotide-disulphide oxidoreductase CH58_1918 PF13806 Rieske-like [2Fe-2S] domain CH58_1919 PF01226 Formate/nitrite transporter CH58_192 PF13593 SBF-like CPA transporter family (DUF4137) CH58_1920 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CH58_1920 PF10414 Sirohaem synthase dimerisation region CH58_1920 PF13241 Putative NAD(P)-binding CH58_1920 PF14824 Sirohaem biosynthesis protein central CH58_1921 PF00579 tRNA synthetases class I (W and Y) CH58_1922 PF13419 Haloacid dehalogenase-like hydrolase CH58_1923 PF00834 Ribulose-phosphate 3 epimerase family CH58_1924 PF02086 D12 class N6 adenine-specific DNA methyltransferase CH58_1925 PF05036 Sporulation related domain CH58_1926 PF01761 3-dehydroquinate synthase CH58_1927 PF01202 Shikimate kinase CH58_1928 PF00263 CH58_1928 CH58_1928 PF03958 Bacterial type II/III secretion system short domain CH58_1929 PF10748 CH58_1929 CH58_1931 PF05137 CH58_1931 CH58_1932 PF11104 Type IV pilus assembly protein PilM; CH58_1933 PF00905 Penicillin binding protein transpeptidase domain CH58_1933 PF00912 Transglycosylase CH58_1933 PF17092 CH58_1933 CH58_1934 PF00293 NUDIX domain CH58_1936 PF07095 Intracellular growth attenuator protein IgaA CH58_1937 PF13419 Haloacid dehalogenase-like hydrolase CH58_1938 PF01479 S4 domain CH58_1939 PF01430 Hsp33 protein CH58_194 PF06097 CH58_194 CH58_1940 PF01293 Phosphoenolpyruvate carboxykinase CH58_1941 PF00512 His Kinase A (phospho-acceptor) domain CH58_1941 PF00672 HAMP domain CH58_1941 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH58_1942 PF00072 Response regulator receiver domain CH58_1942 PF00486 Transcriptional regulatory protein, C terminal CH58_1943 PF01272 Transcription elongation factor, GreA/GreB, C-term CH58_1943 PF03449 Transcription elongation factor, N-terminal CH58_1944 PF00575 S1 RNA binding domain CH58_1944 PF09371 Tex-like protein N-terminal domain CH58_1944 PF12836 Helix-hairpin-helix motif CH58_1944 PF16921 CH58_1944 CH58_1945 PF04023 FeoA domain CH58_1946 PF02421 Ferrous iron transport protein B CH58_1946 PF07664 CH58_1946 CH58_1946 PF07670 Nucleoside recognition CH58_1947 PF09012 FeoC like transcriptional regulator CH58_1948 PF07338 Protein of unknown function (DUF1471) CH58_1949 PF00561 alpha/beta hydrolase fold CH58_195 PF01238 Phosphomannose isomerase type I CH58_1950 PF00156 Phosphoribosyl transferase domain CH58_1951 PF01106 NifU-like domain CH58_1951 PF01521 Iron-sulphur cluster biosynthesis CH58_1952 PF02446 4-alpha-glucanotransferase CH58_1953 PF00343 Carbohydrate phosphorylase CH58_1955 PF00196 Bacterial regulatory proteins, luxR family CH58_1956 PF00581 Rhodanese-like domain CH58_1957 PF01694 Rhomboid family CH58_1957 PF12122 Protein of unknown function (DUF3582) CH58_1958 PF00455 CH58_1958 CH58_1958 PF08220 DeoR-like helix-turn-helix domain CH58_1959 PF13518 Helix-turn-helix domain CH58_196 PF00206 Lyase CH58_196 PF10415 Fumarase C C-terminus CH58_1960 PF01695 IstB-like ATP binding protein CH58_1961 PF00665 Integrase core domain CH58_1961 PF02796 Helix-turn-helix domain of resolvase CH58_1962 PF00665 Integrase core domain CH58_1962 PF13276 CH58_1962 CH58_1963 PF00563 EAL domain CH58_1963 PF00989 PAS fold CH58_1963 PF00990 GGDEF domain CH58_1963 PF05228 CH58_1963 CH58_1965 PF16576 CH58_1965 CH58_1966 PF00873 AcrB/AcrD/AcrF family CH58_1967 PF07906 CH58_1967 CH58_1969 PF13018 CH58_1969 CH58_197 PF05472 DNA replication terminus site-binding protein (Ter protein) CH58_1970 PF12468 Type III secretion system leucine rich repeat protein CH58_1970 PF14496 C-terminal novel E3 ligase, LRR-interacting CH58_1971 PF12468 Type III secretion system leucine rich repeat protein CH58_1973 PF01797 Transposase IS200 like CH58_1974 PF12468 Type III secretion system leucine rich repeat protein CH58_1974 PF14496 C-terminal novel E3 ligase, LRR-interacting CH58_1975 PF03806 CH58_1975 CH58_1976 PF01546 Peptidase family M20/M25/M40 CH58_1976 PF07687 Peptidase dimerisation domain CH58_1977 PF00593 TonB dependent receptor CH58_1977 PF07715 TonB-dependent Receptor Plug Domain CH58_1978 PF00109 Beta-ketoacyl synthase, N-terminal domain CH58_1978 PF00501 AMP-binding enzyme CH58_1978 PF00550 Phosphopantetheine attachment site CH58_1978 PF02801 Beta-ketoacyl synthase, C-terminal domain CH58_198 PF07690 Major Facilitator Superfamily CH58_1983 PF01695 IstB-like ATP binding protein CH58_1984 PF00501 AMP-binding enzyme CH58_1984 PF00550 Phosphopantetheine attachment site CH58_1984 PF00668 Condensation domain CH58_1985 PF00501 AMP-binding enzyme CH58_1985 PF00550 Phosphopantetheine attachment site CH58_1986 PF00501 AMP-binding enzyme CH58_1986 PF00550 Phosphopantetheine attachment site CH58_1986 PF00668 Condensation domain CH58_1986 PF00975 Thioesterase domain CH58_1986 PF08242 Methyltransferase domain CH58_1987 PF01370 NAD dependent epimerase/dehydratase family CH58_1988 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CH58_1989 PF00975 Thioesterase domain CH58_199 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH58_199 PF03466 LysR substrate binding domain CH58_1990 PF07690 Major Facilitator Superfamily CH58_1993 PF00005 ABC transporter CH58_1993 PF00664 ABC transporter transmembrane region CH58_1997 PF02447 CH58_1997 CH58_1999 PF03797 Autotransporter beta-domain CH58_2 PF01904 Protein of unknown function DUF72 CH58_20 PF00893 Small Multidrug Resistance protein CH58_200 PF00480 ROK family CH58_2000 PF03797 Autotransporter beta-domain CH58_2001 PF05954 Phage late control gene D protein (GPD) CH58_2001 PF06715 Gp5 C-terminal repeat (3 copies) CH58_2003 PF03527 CH58_2003 CH58_2003 PF05593 CH58_2003 CH58_2006 PF00939 Sodium:sulfate symporter transmembrane region CH58_2007 PF00356 Bacterial regulatory proteins, lacI family CH58_2007 PF13377 Periplasmic binding protein-like domain CH58_2008 PF00665 Integrase core domain CH58_2008 PF13276 CH58_2008 CH58_2009 PF00150 Cellulase (glycosyl hydrolase family 5) CH58_2010 PF13518 Helix-turn-helix domain CH58_2011 PF05947 CH58_2011 CH58_2012 PF06996 CH58_2012 CH58_2014 PF12790 Type VI secretion lipoprotein CH58_2015 PF05936 CH58_2015 CH58_2016 PF09850 Uncharacterized protein conserved in bacteria (DUF2077) CH58_2017 PF00004 ATPase family associated with various cellular activities (AAA) CH58_2017 PF07724 AAA domain (Cdc48 subfamily) CH58_2017 PF10431 C-terminal, D2-small domain, of ClpB protein CH58_2018 PF02954 Bacterial regulatory protein, Fis family CH58_2019 PF11319 CH58_2019 CH58_202 PF13500 AAA domain CH58_2020 PF06812 CH58_2020 CH58_2020 PF16989 CH58_2020 CH58_2021 PF06744 CH58_2021 CH58_2021 PF06761 CH58_2021 CH58_2021 PF14331 CH58_2021 CH58_2022 PF06812 CH58_2022 CH58_2023 PF12486 CH58_2023 CH58_2024 PF05954 Phage late control gene D protein (GPD) CH58_2025 PF08786 Domain of unknown function (DUF1795) CH58_2026 PF05488 PAAR motif CH58_2026 PF05593 CH58_2026 CH58_2027 PF03527 CH58_2027 CH58_2027 PF14414 CH58_2027 CH58_2028 PF09346 SMI1 / KNR4 family (SUKH-1) CH58_203 PF13377 Periplasmic binding protein-like domain CH58_2030 PF08845 CH58_2030 CH58_2031 PF01381 Helix-turn-helix CH58_2032 PF12486 CH58_2032 CH58_2033 PF05954 Phage late control gene D protein (GPD) CH58_2034 PF08786 Domain of unknown function (DUF1795) CH58_2035 PF03527 CH58_2035 CH58_2035 PF05488 PAAR motif CH58_2035 PF05593 CH58_2035 CH58_2037 PF01261 Xylose isomerase-like TIM barrel CH58_2039 PF01695 IstB-like ATP binding protein CH58_2041 PF00665 Integrase core domain CH58_2041 PF02796 Helix-turn-helix domain of resolvase CH58_2042 PF13673 Acetyltransferase (GNAT) domain CH58_2043 PF00485 Phosphoribulokinase / Uridine kinase family CH58_2044 PF02237 Biotin protein ligase C terminal domain CH58_2044 PF03099 Biotin/lipoate A/B protein ligase family CH58_2044 PF08279 HTH domain CH58_2045 PF01565 FAD binding domain CH58_2045 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain CH58_205 PF01695 IstB-like ATP binding protein CH58_2051 PF12724 Flavodoxin domain CH58_2052 PF02386 Cation transport protein CH58_2053 PF01205 Uncharacterized protein family UPF0029 CH58_2053 PF09186 Domain of unknown function (DUF1949) CH58_2054 PF01797 Transposase IS200 like CH58_2055 PF01205 Uncharacterized protein family UPF0029 CH58_2056 PF00557 Metallopeptidase family M24 CH58_2057 PF00378 Enoyl-CoA hydratase/isomerase family CH58_2057 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain CH58_2057 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain CH58_2058 PF00108 Thiolase, N-terminal domain CH58_2058 PF02803 Thiolase, C-terminal domain CH58_2059 PF00175 Oxidoreductase NAD-binding domain CH58_2059 PF00970 Oxidoreductase FAD-binding domain CH58_206 PF00665 Integrase core domain CH58_206 PF02796 Helix-turn-helix domain of resolvase CH58_2060 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase CH58_2061 PF02357 Transcription termination factor nusG CH58_2062 PF00490 Delta-aminolevulinic acid dehydratase CH58_2063 PF01026 TatD related DNase CH58_2064 PF01695 IstB-like ATP binding protein CH58_2066 PF00665 Integrase core domain CH58_2066 PF02796 Helix-turn-helix domain of resolvase CH58_2068 PF13437 HlyD family secretion protein CH58_2069 PF00005 ABC transporter CH58_2069 PF00664 ABC transporter transmembrane region CH58_2069 PF03412 Peptidase C39 family CH58_2070 PF01797 Transposase IS200 like CH58_2071 PF06005 Protein of unknown function (DUF904) CH58_2072 PF00230 Major intrinsic protein CH58_2073 PF00370 FGGY family of carbohydrate kinases, N-terminal domain CH58_2073 PF02782 FGGY family of carbohydrate kinases, C-terminal domain CH58_2074 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded CH58_2075 PF00175 Oxidoreductase NAD-binding domain CH58_2075 PF00970 Oxidoreductase FAD-binding domain CH58_2076 PF05656 CH58_2076 CH58_2077 PF07305 CH58_2077 CH58_2078 PF00121 Triosephosphate isomerase CH58_2079 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH58_2079 PF03466 LysR substrate binding domain CH58_208 PF00528 Binding-protein-dependent transport system inner membrane component CH58_2080 PF02585 GlcNAc-PI de-N-acetylase CH58_2081 PF03737 Demethylmenaquinone methyltransferase CH58_2082 PF00939 Sodium:sulfate symporter transmembrane region CH58_2083 PF13531 Bacterial extracellular solute-binding protein CH58_2084 PF13531 Bacterial extracellular solute-binding protein CH58_2086 PF00365 Phosphofructokinase CH58_2087 PF01545 Cation efflux family CH58_2087 PF16916 CH58_2087 CH58_2088 PF04754 CH58_2088 CH58_2089 PF07813 LTXXQ motif family protein CH58_209 PF01048 Phosphorylase superfamily CH58_209 PF10423 Bacterial AMP nucleoside phosphorylase N-terminus CH58_2090 PF00072 Response regulator receiver domain CH58_2090 PF00486 Transcriptional regulatory protein, C terminal CH58_2091 PF00512 His Kinase A (phospho-acceptor) domain CH58_2091 PF00672 HAMP domain CH58_2091 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH58_2091 PF16527 CH58_2091 CH58_2092 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain CH58_2092 PF02805 Metal binding domain of Ada CH58_2092 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain CH58_2092 PF12833 Helix-turn-helix domain CH58_2093 PF00588 SpoU rRNA Methylase family CH58_2094 PF00132 Bacterial transferase hexapeptide (six repeats) CH58_2094 PF06426 Serine acetyltransferase, N-terminal CH58_2095 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus CH58_2095 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus CH58_2096 PF02556 Preprotein translocase subunit SecB CH58_2097 PF00462 Glutaredoxin CH58_2098 PF00581 Rhodanese-like domain CH58_2099 PF01676 Metalloenzyme superfamily CH58_2099 PF06415 BPG-independent PGAM N-terminus (iPGM_N) CH58_21 PF00893 Small Multidrug Resistance protein CH58_2100 PF01551 Peptidase family M23 CH58_2101 PF04748 Divergent polysaccharide deacetylase CH58_2102 PF04748 Divergent polysaccharide deacetylase CH58_2103 PF00107 Zinc-binding dehydrogenase CH58_2103 PF08240 Alcohol dehydrogenase GroES-like domain CH58_2104 PF00155 Aminotransferase class I and II CH58_2105 PF01370 NAD dependent epimerase/dehydratase family CH58_2106 PF01075 Glycosyltransferase family 9 (heptosyltransferase) CH58_2107 PF01075 Glycosyltransferase family 9 (heptosyltransferase) CH58_2108 PF00534 Glycosyl transferases group 1 CH58_2108 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) CH58_2109 PF00535 Glycosyl transferase family 2 CH58_211 PF07520 CH58_211 CH58_2110 PF01467 Cytidylyltransferase CH58_2111 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain CH58_2111 PF06827 Zinc finger found in FPG and IleRS CH58_2111 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain CH58_2112 PF00471 Ribosomal protein L33 CH58_2113 PF00830 Ribosomal L28 family CH58_2114 PF04002 RadC-like JAB domain CH58_2115 PF02441 Flavoprotein CH58_2115 PF04127 DNA / pantothenate metabolism flavoprotein CH58_2116 PF00692 dUTPase CH58_2117 PF00440 Bacterial regulatory proteins, tetR family CH58_2118 PF00156 Phosphoribosyl transferase domain CH58_2119 PF01138 3' exoribonuclease family, domain 1 CH58_2119 PF03725 3' exoribonuclease family, domain 2 CH58_212 PF10139 CH58_212 CH58_2120 PF03755 CH58_2120 CH58_2120 PF08340 CH58_2120 CH58_2121 PF03458 CH58_2121 CH58_2122 PF01653 NAD-dependent DNA ligase adenylation domain CH58_2122 PF03120 NAD-dependent DNA ligase OB-fold domain CH58_2123 PF00625 Guanylate kinase CH58_2124 PF01192 RNA polymerase Rpb6 CH58_2125 PF02824 TGS domain CH58_2125 PF04607 Region found in RelA / SpoT proteins CH58_2125 PF13291 ACT domain CH58_2125 PF13328 HD domain CH58_2126 PF00588 SpoU rRNA Methylase family CH58_2126 PF12105 SpoU, rRNA methylase, C-terminal CH58_2127 PF00270 DEAD/DEAH box helicase CH58_2127 PF00271 Helicase conserved C-terminal domain CH58_2127 PF17191 CH58_2127 CH58_2128 PF03616 CH58_2128 CH58_2129 PF00860 Permease family CH58_213 PF07313 Protein of unknown function (DUF1460) CH58_2131 PF00583 Acetyltransferase (GNAT) family CH58_2131 PF09500 Putative thioesterase (yiiD_Cterm) CH58_2132 PF02796 Helix-turn-helix domain of resolvase CH58_2134 PF01695 IstB-like ATP binding protein CH58_2135 PF02580 D-Tyr-tRNA(Tyr) deacylase CH58_2136 PF03631 CH58_2136 CH58_2137 PF13419 Haloacid dehalogenase-like hydrolase CH58_2138 PF00009 Elongation factor Tu GTP binding domain CH58_2138 PF00679 Elongation factor G C-terminus CH58_2138 PF03144 Elongation factor Tu domain 2 CH58_2139 PF00120 Glutamine synthetase, catalytic domain CH58_2139 PF03951 Glutamine synthetase, beta-Grasp domain CH58_214 PF00205 Thiamine pyrophosphate enzyme, central domain CH58_214 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CH58_214 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CH58_2140 PF01797 Transposase IS200 like CH58_2141 PF00512 His Kinase A (phospho-acceptor) domain CH58_2141 PF00989 PAS fold CH58_2141 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH58_2142 PF00072 Response regulator receiver domain CH58_2142 PF00158 Sigma-54 interaction domain CH58_2142 PF02954 Bacterial regulatory protein, Fis family CH58_2143 PF04055 Radical SAM superfamily CH58_2143 PF06969 HemN C-terminal domain CH58_2144 PF04220 CH58_2144 CH58_2145 PF01926 50S ribosome-binding GTPase CH58_2146 PF01797 Transposase IS200 like CH58_2147 PF00476 DNA polymerase family A CH58_2147 PF01367 5'-3' exonuclease, C-terminal SAM fold CH58_2147 PF01612 3'-5' exonuclease CH58_2147 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain CH58_2148 PF01323 DSBA-like thioredoxin domain CH58_2149 PF01636 Phosphotransferase enzyme family CH58_215 PF13710 ACT domain CH58_2150 PF06288 Protein of unknown function (DUF1040) CH58_2151 PF12804 MobA-like NTP transferase domain CH58_2152 PF03205 Molybdopterin guanine dinucleotide synthesis protein B CH58_2153 PF00872 CH58_2153 CH58_2159 PF00392 Bacterial regulatory proteins, gntR family CH58_2159 PF07729 FCD domain CH58_216 PF13419 Haloacid dehalogenase-like hydrolase CH58_2161 PF07690 Major Facilitator Superfamily CH58_2162 PF00294 pfkB family carbohydrate kinase CH58_2163 PF05025 RbsD / FucU transport protein family CH58_2164 PF02705 CH58_2164 CH58_2165 PF01695 IstB-like ATP binding protein CH58_2168 PF00665 Integrase core domain CH58_2168 PF02796 Helix-turn-helix domain of resolvase CH58_2169 PF07728 AAA domain (dynein-related subfamily) CH58_2169 PF12592 Protein of unknown function (DUF3763) CH58_217 PF15615 CH58_217 CH58_2170 PF05762 VWA domain containing CoxE-like protein CH58_2171 PF03590 Aspartate-ammonia ligase CH58_2172 PF01037 AsnC family CH58_2172 PF13404 AsnC-type helix-turn-helix domain CH58_2173 PF00258 Flavodoxin CH58_2174 PF01134 Glucose inhibited division protein A CH58_2174 PF13932 GidA associated domain 3 CH58_2175 PF02527 rRNA small subunit methyltransferase G CH58_2176 PF03899 CH58_2176 CH58_2177 PF00119 ATP synthase A chain CH58_2178 PF00137 ATP synthase subunit C CH58_2179 PF00430 ATP synthase B/B' CF(0) CH58_218 PF13208 CH58_218 CH58_2180 PF00213 ATP synthase delta (OSCP) subunit CH58_2181 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CH58_2181 PF00306 ATP synthase alpha/beta chain, C terminal domain CH58_2181 PF02874 ATP synthase alpha/beta family, beta-barrel domain CH58_2182 PF00231 ATP synthase CH58_2183 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CH58_2183 PF02874 ATP synthase alpha/beta family, beta-barrel domain CH58_2184 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain CH58_2184 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain CH58_2185 PF00132 Bacterial transferase hexapeptide (six repeats) CH58_2185 PF12804 MobA-like NTP transferase domain CH58_2186 PF01380 SIS domain CH58_2186 PF13522 Glutamine amidotransferase domain CH58_2187 PF12849 PBP superfamily domain CH58_2188 PF00528 Binding-protein-dependent transport system inner membrane component CH58_2189 PF00528 Binding-protein-dependent transport system inner membrane component CH58_219 PF00245 Alkaline phosphatase CH58_2190 PF00005 ABC transporter CH58_2191 PF01895 PhoU domain CH58_2192 PF04519 CH58_2192 CH58_2193 PF00497 Bacterial extracellular solute-binding proteins, family 3 CH58_2194 PF00528 Binding-protein-dependent transport system inner membrane component CH58_2195 PF00528 Binding-protein-dependent transport system inner membrane component CH58_2196 PF13419 Haloacid dehalogenase-like hydrolase CH58_2197 PF00860 Permease family CH58_22 PF01042 Endoribonuclease L-PSP CH58_220 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain CH58_220 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain CH58_2200 PF07055 Enoyl reductase FAD binding domain CH58_2200 PF12241 Trans-2-enoyl-CoA reductase catalytic region CH58_2200 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase CH58_2201 PF01926 50S ribosome-binding GTPase CH58_2201 PF10396 GTP-binding protein TrmE N-terminus CH58_2201 PF12631 Catalytic cysteine-containing C-terminus of GTPase, MnmE CH58_2202 PF02096 60Kd inner membrane protein CH58_2202 PF14849 YidC periplasmic domain CH58_2203 PF01809 CH58_2203 CH58_2204 PF00825 Ribonuclease P CH58_2205 PF00468 Ribosomal protein L34 CH58_2207 PF00308 Bacterial dnaA protein CH58_2207 PF08299 Bacterial dnaA protein helix-turn-helix CH58_2207 PF11638 DnaA N-terminal domain CH58_2208 PF00712 DNA polymerase III beta subunit, N-terminal domain CH58_2208 PF02767 DNA polymerase III beta subunit, central domain CH58_2208 PF02768 DNA polymerase III beta subunit, C-terminal domain CH58_2209 PF02463 RecF/RecN/SMC N terminal domain CH58_221 PF00027 Cyclic nucleotide-binding domain CH58_221 PF13545 Crp-like helix-turn-helix domain CH58_2210 PF00204 DNA gyrase B CH58_2210 PF00986 DNA gyrase B subunit, carboxyl terminus CH58_2210 PF01751 Toprim domain CH58_2210 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH58_2211 PF08282 haloacid dehalogenase-like hydrolase CH58_2212 PF00665 Integrase core domain CH58_2212 PF13276 CH58_2212 CH58_2214 PF13518 Helix-turn-helix domain CH58_2215 PF01757 CH58_2215 CH58_2216 PF00419 Fimbrial protein CH58_2217 PF00577 Outer membrane usher protein CH58_2217 PF13954 PapC N-terminal domain CH58_2218 PF00577 Outer membrane usher protein CH58_2219 PF13953 PapC C-terminal domain CH58_222 PF00582 Universal stress protein family CH58_2220 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain CH58_2220 PF02753 Pili assembly chaperone PapD, C-terminal domain CH58_2221 PF00419 Fimbrial protein CH58_2222 PF00370 FGGY family of carbohydrate kinases, N-terminal domain CH58_2222 PF02782 FGGY family of carbohydrate kinases, C-terminal domain CH58_2224 PF13407 Periplasmic binding protein domain CH58_2225 PF00005 ABC transporter CH58_2226 PF02653 CH58_2226 CH58_2227 PF12833 Helix-turn-helix domain CH58_2227 PF13377 Periplasmic binding protein-like domain CH58_2229 PF00589 Phage integrase family CH58_2229 PF13356 Domain of unknown function (DUF4102) CH58_223 PF02233 NAD(P) transhydrogenase beta subunit CH58_2231 PF04606 CH58_2231 CH58_2233 PF13737 CH58_2233 CH58_2234 PF01381 Helix-turn-helix CH58_2236 PF00005 ABC transporter CH58_2237 PF13310 CH58_2237 CH58_2238 PF01032 FecCD transport family CH58_2239 PF01032 FecCD transport family CH58_224 PF01262 Alanine dehydrogenase/PNT, C-terminal domain CH58_224 PF05222 Alanine dehydrogenase/PNT, N-terminal domain CH58_224 PF12769 Domain of unknown function (DUF3814) CH58_2240 PF01497 Periplasmic binding protein CH58_2241 PF13535 ATP-grasp domain CH58_2242 PF01695 IstB-like ATP binding protein CH58_2243 PF00665 Integrase core domain CH58_2243 PF02796 Helix-turn-helix domain of resolvase CH58_2245 PF00892 EamA-like transporter family CH58_2246 PF00156 Phosphoribosyl transferase domain CH58_2247 PF00291 Pyridoxal-phosphate dependent enzyme CH58_2248 PF01175 Urocanase CH58_2248 PF17391 CH58_2248 CH58_2248 PF17392 CH58_2248 CH58_2249 PF00221 Aromatic amino acid lyase CH58_225 PF07338 Protein of unknown function (DUF1471) CH58_2250 PF00324 Amino acid permease CH58_2251 PF12146 Putative lysophospholipase CH58_2252 PF08019 CH58_2252 CH58_2253 PF00884 Sulfatase CH58_2254 PF00072 Response regulator receiver domain CH58_2254 PF00196 Bacterial regulatory proteins, luxR family CH58_2255 PF05231 CH58_2255 CH58_2256 PF02796 Helix-turn-helix domain of resolvase CH58_2257 PF00665 Integrase core domain CH58_2258 PF01695 IstB-like ATP binding protein CH58_2259 PF05943 CH58_2259 CH58_226 PF13520 Amino acid permease CH58_2260 PF05591 CH58_2260 CH58_2261 PF06812 CH58_2261 CH58_2262 PF10074 CH58_2262 CH58_2263 PF00849 RNA pseudouridylate synthase CH58_2264 PF00226 DnaJ domain CH58_2264 PF05099 Tellurite resistance protein TerB CH58_2265 PF03968 OstA-like protein CH58_2265 PF04453 Organic solvent tolerance protein CH58_2266 PF00639 PPIC-type PPIASE domain CH58_2266 PF09312 SurA N-terminal domain CH58_2267 PF04166 Pyridoxal phosphate biosynthetic protein PdxA CH58_2268 PF00398 Ribosomal RNA adenine dimethylase CH58_2269 PF04379 Protein of unknown function (DUF525) CH58_2270 PF00149 Calcineurin-like phosphoesterase CH58_2271 PF12582 CH58_2271 CH58_2272 PF01797 Transposase IS200 like CH58_2273 PF00186 Dihydrofolate reductase CH58_2274 PF12821 CH58_2274 CH58_2275 PF06738 CH58_2275 CH58_2276 PF01810 CH58_2276 CH58_2277 PF02142 MGS-like domain CH58_2277 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain CH58_2277 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain CH58_2278 PF00117 Glutamine amidotransferase class-I CH58_2278 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain CH58_2279 PF01113 Dihydrodipicolinate reductase, N-terminus CH58_2279 PF05173 Dihydrodipicolinate reductase, C-terminus CH58_228 PF00072 Response regulator receiver domain CH58_228 PF00486 Transcriptional regulatory protein, C terminal CH58_2280 PF01797 Transposase IS200 like CH58_2281 PF02401 LytB protein CH58_2282 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CH58_2283 PF01252 CH58_2283 CH58_2284 PF00133 tRNA synthetases class I (I, L, M and V) CH58_2284 PF06827 Zinc finger found in FPG and IleRS CH58_2284 PF08264 Anticodon-binding domain of tRNA CH58_2285 PF01687 Riboflavin kinase CH58_2285 PF06574 FAD synthetase CH58_2286 PF01649 Ribosomal protein S20 CH58_2287 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH58_2287 PF03466 LysR substrate binding domain CH58_2288 PF06965 Na+/H+ antiporter 1 CH58_2289 PF00226 DnaJ domain CH58_2289 PF00684 DnaJ central domain CH58_2289 PF01556 DnaJ C terminal domain CH58_229 PF00512 His Kinase A (phospho-acceptor) domain CH58_229 PF00672 HAMP domain CH58_229 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH58_2290 PF00012 Hsp70 protein CH58_2291 PF01184 CH58_2291 CH58_2293 PF07690 Major Facilitator Superfamily CH58_2294 PF00994 Probable molybdopterin binding domain CH58_2295 PF00923 Transaldolase CH58_2296 PF03883 CH58_2296 CH58_2298 PF00291 Pyridoxal-phosphate dependent enzyme CH58_2298 PF14821 Threonine synthase N terminus CH58_2299 PF00288 GHMP kinases N terminal domain CH58_2299 PF08544 GHMP kinases C terminal CH58_23 PF06733 DEAD_2 CH58_23 PF13307 Helicase C-terminal domain CH58_230 PF02074 Carboxypeptidase Taq (M32) metallopeptidase CH58_2300 PF00696 Amino acid kinase family CH58_2300 PF00742 Homoserine dehydrogenase CH58_2300 PF01842 ACT domain CH58_2300 PF03447 Homoserine dehydrogenase, NAD binding domain CH58_2300 PF13840 ACT domain CH58_2302 PF00072 Response regulator receiver domain CH58_2302 PF00486 Transcriptional regulatory protein, C terminal CH58_2303 PF05981 CH58_2303 CH58_2305 PF00300 Histidine phosphatase superfamily (branch 1) CH58_2306 PF06445 GyrI-like small molecule binding domain CH58_2306 PF12833 Helix-turn-helix domain CH58_2307 PF01371 Trp repressor protein CH58_2308 PF01931 Protein of unknown function DUF84 CH58_2309 PF01464 Transglycosylase SLT domain CH58_2309 PF14718 Soluble lytic murein transglycosylase L domain CH58_231 PF01797 Transposase IS200 like CH58_2310 PF00122 E1-E2 ATPase CH58_2310 PF00689 Cation transporting ATPase, C-terminus CH58_2310 PF00690 Cation transporter/ATPase, N-terminus CH58_2310 PF00702 haloacid dehalogenase-like hydrolase CH58_2311 PF13689 CH58_2311 CH58_2312 PF00990 GGDEF domain CH58_2312 PF17152 CH58_2312 CH58_2313 PF00691 OmpA family CH58_2314 PF00005 ABC transporter CH58_2315 PF12848 ABC transporter CH58_2316 PF01695 IstB-like ATP binding protein CH58_2318 PF00665 Integrase core domain CH58_2318 PF02796 Helix-turn-helix domain of resolvase CH58_2319 PF12715 Abhydrolase family CH58_232 PF03497 Anthrax toxin LF subunit CH58_2320 PF00474 Sodium:solute symporter family CH58_2321 PF04341 CH58_2321 CH58_2322 PF00501 AMP-binding enzyme CH58_2322 PF13193 AMP-binding enzyme C-terminal domain CH58_2322 PF16177 CH58_2322 CH58_2323 PF00375 Sodium:dicarboxylate symporter family CH58_2324 PF00072 Response regulator receiver domain CH58_2324 PF00196 Bacterial regulatory proteins, luxR family CH58_2325 PF00072 Response regulator receiver domain CH58_2325 PF00512 His Kinase A (phospho-acceptor) domain CH58_2325 PF01627 Hpt domain CH58_2325 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH58_2326 PF00263 CH58_2326 CH58_2326 PF03958 Bacterial type II/III secretion system short domain CH58_2327 PF16693 CH58_2327 CH58_2328 PF08988 Protein of unknown function (DUF1895) CH58_2329 PF12833 Helix-turn-helix domain CH58_2330 PF09392 Type III secretion needle MxiH like CH58_2331 PF06287 CH58_2331 CH58_2333 PF01514 Secretory protein of YscJ/FliF family CH58_2334 PF13327 CH58_2334 CH58_2335 PF06188 CH58_2335 CH58_2336 PF00771 FHIPEP family CH58_2337 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CH58_2337 PF02874 ATP synthase alpha/beta family, beta-barrel domain CH58_234 PF04264 YceI-like domain CH58_2340 PF01052 Surface presentation of antigens (SPOA) CH58_2341 PF00813 CH58_2341 CH58_2342 PF01313 CH58_2342 CH58_2343 PF01311 CH58_2343 CH58_2344 PF01312 FlhB HrpN YscU SpaS Family CH58_2345 PF04143 CH58_2345 CH58_2346 PF01206 Sulfurtransferase TusA CH58_2347 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH58_2347 PF03466 LysR substrate binding domain CH58_2349 PF01053 Cys/Met metabolism PLP-dependent enzyme CH58_235 PF01292 Prokaryotic cytochrome b561 CH58_2350 PF00005 ABC transporter CH58_2351 PF01032 FecCD transport family CH58_2352 PF01497 Periplasmic binding protein CH58_2353 PF05171 Haemin-degrading HemS CH58_2354 PF00593 TonB dependent receptor CH58_2354 PF07715 TonB-dependent Receptor Plug Domain CH58_2355 PF13460 NADH(P)-binding CH58_2356 PF06228 Haem utilisation ChuX/HutX CH58_2357 PF04055 Radical SAM superfamily CH58_2358 PF02219 Methylenetetrahydrofolate reductase CH58_2360 PF15617 CH58_2360 CH58_2361 PF11202 CH58_2361 CH58_2361 PF15608 CH58_2361 CH58_2363 PF12500 CH58_2363 CH58_2363 PF15609 CH58_2363 CH58_2364 PF15632 CH58_2364 CH58_2365 PF02342 TerD domain CH58_2366 PF02342 TerD domain CH58_2367 PF05099 Tellurite resistance protein TerB CH58_2368 PF03741 CH58_2368 CH58_2369 PF02342 TerD domain CH58_237 PF00089 Trypsin CH58_2370 PF02342 TerD domain CH58_2371 PF06551 CH58_2371 CH58_2372 PF00577 Outer membrane usher protein CH58_2372 PF13953 PapC C-terminal domain CH58_2372 PF13954 PapC N-terminal domain CH58_2373 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain CH58_2376 PF01565 FAD binding domain CH58_2376 PF08031 Berberine and berberine like CH58_2377 PF03797 Autotransporter beta-domain CH58_2378 PF04345 Chorismate lyase CH58_2379 PF01040 UbiA prenyltransferase family CH58_238 PF01381 Helix-turn-helix CH58_2382 PF01219 Prokaryotic diacylglycerol kinase CH58_2383 PF00717 Peptidase S24-like CH58_2383 PF01726 LexA DNA binding domain CH58_2384 PF01475 Ferric uptake regulator family CH58_2385 PF01207 Dihydrouridine synthase (Dus) CH58_2386 PF09583 CH58_2386 CH58_2387 PF00107 Zinc-binding dehydrogenase CH58_2387 PF08240 Alcohol dehydrogenase GroES-like domain CH58_2388 PF00772 DnaB-like helicase N terminal domain CH58_2388 PF03796 DnaB-like helicase C terminal domain CH58_2389 PF00842 Alanine racemase, C-terminal domain CH58_2389 PF01168 Alanine racemase, N-terminal domain CH58_239 PF05973 CH58_239 CH58_2390 PF00155 Aminotransferase class I and II CH58_2391 PF04237 YjbR CH58_2392 PF00005 ABC transporter CH58_2393 PF00436 Single-strand binding protein family CH58_2394 PF05336 Domain of unknown function (DUF718) CH58_2395 PF00465 Iron-containing alcohol dehydrogenase CH58_2396 PF00665 Integrase core domain CH58_2396 PF02796 Helix-turn-helix domain of resolvase CH58_2397 PF01695 IstB-like ATP binding protein CH58_2398 PF00465 Iron-containing alcohol dehydrogenase CH58_2399 PF00596 Class II Aldolase and Adducin N-terminal domain CH58_24 PF00814 Glycoprotease family CH58_240 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold CH58_240 PF11898 CH58_240 CH58_2400 PF06134 L-rhamnose isomerase (RhaA) CH58_2401 PF00370 FGGY family of carbohydrate kinases, N-terminal domain CH58_2401 PF02782 FGGY family of carbohydrate kinases, C-terminal domain CH58_2404 PF02311 AraC-like ligand binding domain CH58_2404 PF12833 Helix-turn-helix domain CH58_2405 PF02311 AraC-like ligand binding domain CH58_2405 PF12833 Helix-turn-helix domain CH58_2406 PF06379 CH58_2406 CH58_2409 PF03272 CH58_2409 CH58_2409 PF13402 Peptidase M60-like family CH58_2411 PF00440 Bacterial regulatory proteins, tetR family CH58_2412 PF07992 Pyridine nucleotide-disulphide oxidoreductase CH58_2412 PF13247 4Fe-4S dicluster domain CH58_2412 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster CH58_2413 PF12800 4Fe-4S binding domain CH58_2413 PF13187 4Fe-4S dicluster domain CH58_2414 PF00384 Molybdopterin oxidoreductase CH58_2414 PF01568 Molydopterin dinucleotide binding domain CH58_2414 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CH58_2415 PF02683 CH58_2415 CH58_2415 PF11412 Disulphide bond corrector protein DsbC CH58_2415 PF13899 Thioredoxin-like CH58_2416 PF03091 CutA1 divalent ion tolerance protein CH58_2417 PF03605 CH58_2417 CH58_2418 PF00206 Lyase CH58_2418 PF10415 Fumarase C C-terminus CH58_2419 PF04186 CH58_2419 CH58_2420 PF00166 Chaperonin 10 Kd subunit CH58_2421 PF00118 TCP-1/cpn60 chaperonin family CH58_2422 PF13698 CH58_2422 CH58_2423 PF04055 Radical SAM superfamily CH58_2423 PF13353 4Fe-4S single cluster domain CH58_2424 PF01132 Elongation factor P (EF-P) OB domain CH58_2424 PF08207 Elongation factor P (EF-P) KOW-like domain CH58_2424 PF09285 Elongation factor P, C-terminal CH58_2425 PF00893 Small Multidrug Resistance protein CH58_2426 PF02313 Fumarate reductase subunit D CH58_2427 PF02300 Fumarate reductase subunit C CH58_2428 PF13085 2Fe-2S iron-sulfur cluster binding domain CH58_2428 PF13183 4Fe-4S dicluster domain CH58_2429 PF00890 FAD binding domain CH58_2429 PF02910 Fumarate reductase flavoprotein C-term CH58_243 PF00665 Integrase core domain CH58_2430 PF00152 tRNA synthetases class II (D, K and N) CH58_2431 PF00924 Mechanosensitive ion channel CH58_2431 PF12794 CH58_2431 CH58_2431 PF12795 CH58_2431 CH58_2432 PF02666 CH58_2432 CH58_2433 PF03193 Protein of unknown function, DUF258 CH58_2434 PF00929 Exonuclease CH58_2438 PF08331 CH58_2438 CH58_2438 PF13484 CH58_2438 CH58_2439 PF01256 Carbohydrate kinase CH58_2439 PF03853 YjeF-related protein N-terminus CH58_244 PF01695 IstB-like ATP binding protein CH58_2440 PF02367 Uncharacterised P-loop hydrolase UPF0079 CH58_2441 PF01476 LysM domain CH58_2441 PF01520 N-acetylmuramoyl-L-alanine amidase CH58_2441 PF11741 AMIN domain CH58_2442 PF01119 DNA mismatch repair protein, C-terminal domain CH58_2442 PF08676 MutL C terminal dimerisation domain CH58_2442 PF13589 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH58_2443 PF01715 IPP transferase CH58_2444 PF17209 CH58_2444 CH58_2445 PF01926 50S ribosome-binding GTPase CH58_2445 PF13167 CH58_2445 CH58_2445 PF16360 CH58_2445 CH58_2446 PF01145 SPFH domain / Band 7 family CH58_2446 PF12221 CH58_2446 CH58_2447 PF01145 SPFH domain / Band 7 family CH58_2448 PF09838 CH58_2448 CH58_2449 PF00709 Adenylosuccinate synthetase CH58_245 PF01695 IstB-like ATP binding protein CH58_2450 PF02082 Transcriptional regulator CH58_2451 PF00575 S1 RNA binding domain CH58_2451 PF00773 RNB domain CH58_2451 PF08206 Ribonuclease B OB domain CH58_2451 PF08461 Ribonuclease R winged-helix domain CH58_2452 PF00588 SpoU rRNA Methylase family CH58_2452 PF08032 RNA 2'-O ribose methyltransferase substrate binding CH58_2453 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CH58_2453 PF02770 Acyl-CoA dehydrogenase, middle domain CH58_2454 PF07338 Protein of unknown function (DUF1471) CH58_2456 PF01695 IstB-like ATP binding protein CH58_2457 PF00665 Integrase core domain CH58_2457 PF02796 Helix-turn-helix domain of resolvase CH58_2458 PF07728 AAA domain (dynein-related subfamily) CH58_2459 PF10117 CH58_2459 CH58_246 PF00270 DEAD/DEAH box helicase CH58_246 PF00271 Helicase conserved C-terminal domain CH58_246 PF04408 Helicase associated domain (HA2) CH58_2460 PF01527 Transposase CH58_2461 PF01555 DNA methylase CH58_2462 PF13589 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH58_2467 PF13558 Putative exonuclease SbcCD, C subunit CH58_2468 PF09983 CH58_2468 CH58_2468 PF11795 CH58_2468 CH58_2469 PF01435 Peptidase family M48 CH58_247 PF02525 Flavodoxin-like fold CH58_2470 PF05987 CH58_2470 CH58_2472 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit CH58_2473 PF12833 Helix-turn-helix domain CH58_2474 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit CH58_2475 PF02378 Phosphotransferase system, EIIC CH58_2476 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 CH58_2476 PF00381 PTS HPr component phosphorylation site CH58_2476 PF00391 PEP-utilising enzyme, mobile domain CH58_2476 PF02896 PEP-utilising enzyme, TIM barrel domain CH58_2476 PF05524 PEP-utilising enzyme, N-terminal CH58_2477 PF10696 CH58_2477 CH58_2478 PF03992 Antibiotic biosynthesis monooxygenase CH58_2479 PF01791 DeoC/LacD family aldolase CH58_248 PF04198 Putative sugar-binding domain CH58_2480 PF13407 Periplasmic binding protein domain CH58_2481 PF02653 CH58_2481 CH58_2482 PF02653 CH58_2482 CH58_2483 PF00005 ABC transporter CH58_2484 PF00325 Bacterial regulatory proteins, crp family CH58_2485 PF04198 Putative sugar-binding domain CH58_2486 PF00370 FGGY family of carbohydrate kinases, N-terminal domain CH58_2486 PF02782 FGGY family of carbohydrate kinases, C-terminal domain CH58_2487 PF01075 Glycosyltransferase family 9 (heptosyltransferase) CH58_2488 PF04932 CH58_2488 CH58_2489 PF06305 CH58_2489 CH58_249 PF01232 Mannitol dehydrogenase Rossmann domain CH58_249 PF08125 Mannitol dehydrogenase C-terminal domain CH58_2490 PF16576 CH58_2490 CH58_2491 PF00873 AcrB/AcrD/AcrF family CH58_2492 PF00873 AcrB/AcrD/AcrF family CH58_2494 PF01095 Pectinesterase CH58_2495 PF00990 GGDEF domain CH58_2496 PF07256 CH58_2496 CH58_2498 PF05175 Methyltransferase small domain CH58_2498 PF08468 Methyltransferase small domain N-terminal CH58_2499 PF03603 DNA polymerase III psi subunit CH58_25 PF03843 CH58_25 CH58_250 PF07027 CH58_250 CH58_2500 PF00583 Acetyltransferase (GNAT) family CH58_2501 PF00009 Elongation factor Tu GTP binding domain CH58_2501 PF03144 Elongation factor Tu domain 2 CH58_2501 PF16658 CH58_2501 CH58_2502 PF04972 BON domain CH58_2503 PF07043 CH58_2503 CH58_2504 PF01734 Patatin-like phospholipase CH58_2505 PF01026 TatD related DNase CH58_2506 PF01773 Na+ dependent nucleoside transporter N-terminus CH58_2506 PF07662 Na+ dependent nucleoside transporter C-terminus CH58_2506 PF07670 Nucleoside recognition CH58_2507 PF01791 DeoC/LacD family aldolase CH58_2508 PF00591 Glycosyl transferase family, a/b domain CH58_2508 PF02885 Glycosyl transferase family, helical bundle domain CH58_2509 PF00591 Glycosyl transferase family, a/b domain CH58_2509 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain CH58_251 PF13617 CH58_251 CH58_2510 PF01676 Metalloenzyme superfamily CH58_2511 PF01048 Phosphorylase superfamily CH58_2512 PF10144 CH58_2512 CH58_2513 PF12710 haloacid dehalogenase-like hydrolase CH58_2514 PF13481 AAA domain CH58_2514 PF13541 Subunit ChlI of Mg-chelatase CH58_2515 PF01381 Helix-turn-helix CH58_2515 PF13521 AAA domain CH58_2516 PF02661 Fic/DOC family CH58_2516 PF13776 CH58_2516 CH58_2517 PF00005 ABC transporter CH58_2518 PF00665 Integrase core domain CH58_2518 PF02796 Helix-turn-helix domain of resolvase CH58_252 PF11739 CH58_252 CH58_2520 PF01695 IstB-like ATP binding protein CH58_2521 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH58_2521 PF07730 Histidine kinase CH58_2522 PF07690 Major Facilitator Superfamily CH58_2524 PF01797 Transposase IS200 like CH58_2525 PF05860 haemagglutination activity domain CH58_2526 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB CH58_2526 PF08479 POTRA domain, ShlB-type CH58_2526 PF17287 CH58_2526 CH58_2528 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CH58_2529 PF00528 Binding-protein-dependent transport system inner membrane component CH58_253 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CH58_253 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CH58_2530 PF00528 Binding-protein-dependent transport system inner membrane component CH58_2530 PF12911 CH58_2530 CH58_2531 PF00005 ABC transporter CH58_2531 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CH58_2532 PF00005 ABC transporter CH58_2532 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CH58_2533 PF01270 Glycosyl hydrolases family 8 CH58_2534 PF00563 EAL domain CH58_2534 PF00990 GGDEF domain CH58_2534 PF17154 CH58_2534 CH58_2535 PF06178 Oligogalacturonate-specific porin protein (KdgM) CH58_2536 PF06917 Periplasmic pectate lyase CH58_2537 PF00754 F5/8 type C domain CH58_2538 PF00375 Sodium:dicarboxylate symporter family CH58_254 PF03724 META domain CH58_2540 PF00675 Insulinase (Peptidase family M16) CH58_2540 PF05193 Peptidase M16 inactive domain CH58_2541 PF00294 pfkB family carbohydrate kinase CH58_2542 PF01361 Tautomerase enzyme CH58_2543 PF00563 EAL domain CH58_2544 PF02611 CDP-diacylglycerol pyrophosphatase CH58_2545 PF05170 CH58_2545 CH58_2546 PF03631 CH58_2546 CH58_2547 PF03212 Pertactin CH58_2547 PF03797 Autotransporter beta-domain CH58_2548 PF11692 CH58_2548 CH58_2549 PF06092 CH58_2549 CH58_255 PF03891 CH58_255 CH58_2550 PF06092 CH58_2550 CH58_2551 PF02595 Glycerate kinase family CH58_2552 PF02447 CH58_2552 CH58_2553 PF05651 CH58_2553 CH58_2553 PF13556 PucR C-terminal helix-turn-helix domain CH58_2554 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CH58_2554 PF07992 Pyridine nucleotide-disulphide oxidoreductase CH58_2555 PF04378 Ribosomal RNA small subunit methyltransferase D, RsmJ CH58_2556 PF01432 Peptidase family M3 CH58_2557 PF04445 Putative SAM-dependent methyltransferase CH58_2558 PF08548 Peptidase M10 serralysin C terminal CH58_2559 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase CH58_2559 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain CH58_256 PF02308 CH58_256 CH58_2560 PF00582 Universal stress protein family CH58_2561 PF10625 CH58_2561 CH58_2562 PF01797 Transposase IS200 like CH58_2563 PF01384 CH58_2563 CH58_2564 PF03486 HI0933-like protein CH58_2565 PF00072 Response regulator receiver domain CH58_2565 PF00512 His Kinase A (phospho-acceptor) domain CH58_2565 PF00672 HAMP domain CH58_2565 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH58_2565 PF12860 CH58_2565 CH58_2566 PF00005 ABC transporter CH58_2567 PF02653 CH58_2567 CH58_2568 PF13407 Periplasmic binding protein domain CH58_2569 PF07385 Protein of unknown function (DUF1498) CH58_257 PF00893 Small Multidrug Resistance protein CH58_2570 PF01116 Fructose-bisphosphate aldolase class-II CH58_2571 PF00294 pfkB family carbohydrate kinase CH58_2572 PF00072 Response regulator receiver domain CH58_2572 PF00486 Transcriptional regulatory protein, C terminal CH58_2574 PF02678 Pirin CH58_2575 PF00356 Bacterial regulatory proteins, lacI family CH58_2575 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family CH58_2576 PF02447 CH58_2576 CH58_2577 PF01202 Shikimate kinase CH58_258 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase CH58_258 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg CH58_258 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CH58_258 PF10371 Domain of unknown function CH58_258 PF12838 4Fe-4S dicluster domain CH58_258 PF17147 CH58_258 CH58_2581 PF01914 CH58_2581 CH58_2582 PF01118 Semialdehyde dehydrogenase, NAD binding domain CH58_2582 PF02774 Semialdehyde dehydrogenase, dimerisation domain CH58_2588 PF01476 LysM domain CH58_2588 PF02369 Bacterial Ig-like domain (group 1) CH58_2588 PF11924 Protein of unknown function (DUF3442) CH58_2589 PF06580 CH58_2589 CH58_2589 PF07694 5TMR of 5TMR-LYT CH58_259 PF01171 PP-loop family CH58_2590 PF00128 Alpha amylase, catalytic domain CH58_2590 PF02806 Alpha amylase, C-terminal all-beta domain CH58_2590 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) CH58_2591 PF00128 Alpha amylase, catalytic domain CH58_2591 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) CH58_2592 PF00483 Nucleotidyl transferase CH58_2593 PF00534 Glycosyl transferases group 1 CH58_2593 PF08323 Starch synthase catalytic domain CH58_2594 PF00343 Carbohydrate phosphorylase CH58_2595 PF01266 FAD dependent oxidoreductase CH58_2595 PF16901 CH58_2595 CH58_2597 PF06092 CH58_2597 CH58_2598 PF13333 CH58_2598 CH58_2599 PF13518 Helix-turn-helix domain CH58_26 PF00501 AMP-binding enzyme CH58_26 PF13193 AMP-binding enzyme C-terminal domain CH58_2600 PF00665 Integrase core domain CH58_2600 PF02796 Helix-turn-helix domain of resolvase CH58_2602 PF01695 IstB-like ATP binding protein CH58_2603 PF13409 Glutathione S-transferase, N-terminal domain CH58_2603 PF13410 Glutathione S-transferase, C-terminal domain CH58_2604 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH58_2604 PF03466 LysR substrate binding domain CH58_2605 PF02678 Pirin CH58_2606 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CH58_2607 PF04348 LppC putative lipoprotein CH58_2608 PF02021 Uncharacterised protein family UPF0102 CH58_2609 PF13580 SIS domain CH58_261 PF07859 alpha/beta hydrolase fold CH58_2610 PF04972 BON domain CH58_2611 PF00912 Transglycosylase CH58_2613 PF00072 Response regulator receiver domain CH58_2613 PF00512 His Kinase A (phospho-acceptor) domain CH58_2613 PF00989 PAS fold CH58_2613 PF01627 Hpt domain CH58_2613 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH58_2614 PF04055 Radical SAM superfamily CH58_2614 PF16199 CH58_2614 CH58_2615 PF00310 Glutamine amidotransferases class-II CH58_2615 PF01493 GXGXG motif CH58_2615 PF01645 Conserved region in glutamate synthase CH58_2615 PF04898 Glutamate synthase central domain CH58_2616 PF07992 Pyridine nucleotide-disulphide oxidoreductase CH58_2616 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster CH58_2618 PF04386 Stringent starvation protein B CH58_2619 PF00043 Glutathione S-transferase, C-terminal domain CH58_2619 PF02798 Glutathione S-transferase, N-terminal domain CH58_262 PF13411 MerR HTH family regulatory protein CH58_2620 PF00380 Ribosomal protein S9/S16 CH58_2621 PF00572 Ribosomal protein L13 CH58_2622 PF03969 AFG1-like ATPase CH58_2623 PF06295 CH58_2623 CH58_2624 PF00595 PDZ domain (Also known as DHR or GLGF) CH58_2624 PF13180 PDZ domain CH58_2624 PF13365 Trypsin-like peptidase domain CH58_2625 PF01797 Transposase IS200 like CH58_2626 PF13180 PDZ domain CH58_2626 PF13365 Trypsin-like peptidase domain CH58_2627 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) CH58_2628 PF01722 BolA-like protein CH58_2629 PF13466 STAS domain CH58_263 PF01544 CorA-like Mg2+ transporter protein CH58_2630 PF05494 Toluene tolerance, Ttg2 CH58_2631 PF02470 CH58_2631 CH58_2632 PF02405 CH58_2632 CH58_2633 PF00005 ABC transporter CH58_2634 PF01699 Sodium/calcium exchanger protein CH58_2635 PF00571 CBS domain CH58_2635 PF01380 SIS domain CH58_2636 PF08282 haloacid dehalogenase-like hydrolase CH58_2637 PF06835 Lipopolysaccharide-assembly, LptC-related CH58_2638 PF03968 OstA-like protein CH58_2639 PF00005 ABC transporter CH58_2639 PF12399 Branched-chain amino acid ATP-binding cassette transporter CH58_264 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CH58_2640 PF00309 CH58_2640 CH58_2640 PF04552 Sigma-54, DNA binding domain CH58_2640 PF04963 Sigma-54 factor, core binding domain CH58_2641 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein CH58_2642 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 CH58_2643 PF03668 CH58_2643 CH58_2644 PF00381 PTS HPr component phosphorylation site CH58_2645 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain CH58_2645 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain CH58_2646 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain CH58_2646 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain CH58_2647 PF01042 Endoribonuclease L-PSP CH58_2648 PF16743 CH58_2648 CH58_2649 PF00356 Bacterial regulatory proteins, lacI family CH58_2649 PF13377 Periplasmic binding protein-like domain CH58_265 PF00246 Zinc carboxypeptidase CH58_2650 PF00367 phosphotransferase system, EIIB CH58_2650 PF02378 Phosphotransferase system, EIIC CH58_2651 PF00128 Alpha amylase, catalytic domain CH58_2651 PF11941 Domain of unknown function (DUF3459) CH58_2652 PF01272 Transcription elongation factor, GreA/GreB, C-term CH58_2652 PF14760 Rnk N-terminus CH58_2653 PF07361 Cytochrome b562 CH58_2655 PF01523 Putative modulator of DNA gyrase CH58_2656 PF04751 Protein of unknown function (DUF615) CH58_2657 PF01337 Barstar (barnase inhibitor) CH58_2658 PF00545 ribonuclease CH58_2659 PF00171 Aldehyde dehydrogenase family CH58_266 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain CH58_266 PF13378 Enolase C-terminal domain-like CH58_2660 PF00171 Aldehyde dehydrogenase family CH58_2661 PF04632 CH58_2661 CH58_2662 PF13437 HlyD family secretion protein CH58_2662 PF13533 Biotin-lipoyl like CH58_2663 PF07869 CH58_2663 CH58_2664 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH58_2664 PF03466 LysR substrate binding domain CH58_2665 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH58_2666 PF03538 Salmonella virulence plasmid 28 CH58_267 PF08534 Redoxin CH58_2670 PF03534 Salmonella virulence plasmid 65kDa B protein CH58_2670 PF12255 Insecticide toxin TcdB middle/C-terminal region CH58_2670 PF12256 Insecticide toxin TcdB middle/N-terminal region CH58_2671 PF16083 CH58_2671 CH58_2672 PF13539 D-alanyl-D-alanine carboxypeptidase CH58_2673 PF10828 CH58_2673 CH58_2674 PF00782 Dual specificity phosphatase, catalytic domain CH58_2676 PF01523 Putative modulator of DNA gyrase CH58_2677 PF00795 Carbon-nitrogen hydrolase CH58_2678 PF13116 CH58_2678 CH58_2678 PF13502 CH58_2678 CH58_2679 PF00575 S1 RNA binding domain CH58_2679 PF10150 Ribonuclease E/G family CH58_268 PF01797 Transposase IS200 like CH58_2680 PF02545 Maf-like protein CH58_2681 PF04093 CH58_2681 CH58_2682 PF04085 rod shape-determining protein MreC CH58_2683 PF06723 MreB/Mbl protein CH58_2684 PF00563 EAL domain CH58_2684 PF00990 GGDEF domain CH58_2684 PF17157 CH58_2684 CH58_2685 PF00107 Zinc-binding dehydrogenase CH58_2685 PF08240 Alcohol dehydrogenase GroES-like domain CH58_2686 PF00174 Oxidoreductase molybdopterin binding domain CH58_2687 PF01794 CH58_2687 CH58_2688 PF01220 Dehydroquinase class II CH58_2689 PF00364 Biotin-requiring enzyme CH58_269 PF00158 Sigma-54 interaction domain CH58_269 PF00989 PAS fold CH58_2690 PF00289 Carbamoyl-phosphate synthase L chain, N-terminal domain CH58_2690 PF02785 Biotin carboxylase C-terminal domain CH58_2690 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain CH58_2692 PF06196 CH58_2692 CH58_2693 PF00474 Sodium:solute symporter family CH58_2694 PF06325 Ribosomal protein L11 methyltransferase (PrmA) CH58_2695 PF01207 Dihydrouridine synthase (Dus) CH58_2696 PF02954 Bacterial regulatory protein, Fis family CH58_2698 PF00392 Bacterial regulatory proteins, gntR family CH58_2698 PF07729 FCD domain CH58_2699 PF07690 Major Facilitator Superfamily CH58_27 PF00570 HRDC domain CH58_27 PF01612 3'-5' exonuclease CH58_270 PF09722 CH58_270 CH58_2700 PF02627 Carboxymuconolactone decarboxylase family CH58_2701 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase CH58_2701 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase CH58_2702 PF00753 Metallo-beta-lactamase superfamily CH58_2703 PF05433 CH58_2703 CH58_2704 PF00313 'Cold-shock' DNA-binding domain CH58_2705 PF00313 'Cold-shock' DNA-binding domain CH58_2706 PF01797 Transposase IS200 like CH58_2708 PF13449 Esterase-like activity of phytase CH58_2709 PF02798 Glutathione S-transferase, N-terminal domain CH58_2709 PF13410 Glutathione S-transferase, C-terminal domain CH58_271 PF08808 CH58_271 CH58_2710 PF01380 SIS domain CH58_2711 PF00370 FGGY family of carbohydrate kinases, N-terminal domain CH58_2711 PF02782 FGGY family of carbohydrate kinases, C-terminal domain CH58_2712 PF02653 CH58_2712 CH58_2713 PF02653 CH58_2713 CH58_2714 PF00005 ABC transporter CH58_2715 PF13407 Periplasmic binding protein domain CH58_2716 PF03279 CH58_2716 CH58_2718 PF00999 Sodium/hydrogen exchanger family CH58_2719 PF00860 Permease family CH58_272 PF05128 CH58_272 CH58_2720 PF04221 RelB antitoxin CH58_2721 PF00005 ABC transporter CH58_2722 PF00528 Binding-protein-dependent transport system inner membrane component CH58_2723 PF00296 Luciferase-like monooxygenase CH58_2724 PF09084 NMT1/THI5 like CH58_2725 PF03358 NADPH-dependent FMN reductase CH58_2726 PF01791 DeoC/LacD family aldolase CH58_2727 PF00294 pfkB family carbohydrate kinase CH58_2728 PF05025 RbsD / FucU transport protein family CH58_2729 PF02311 AraC-like ligand binding domain CH58_2729 PF12833 Helix-turn-helix domain CH58_273 PF04317 CH58_273 CH58_2730 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CH58_2731 PF00665 Integrase core domain CH58_2731 PF02796 Helix-turn-helix domain of resolvase CH58_2733 PF01695 IstB-like ATP binding protein CH58_2738 PF00009 Elongation factor Tu GTP binding domain CH58_2738 PF03143 Elongation factor Tu C-terminal domain CH58_2738 PF03144 Elongation factor Tu domain 2 CH58_2739 PF00584 SecE/Sec61-gamma subunits of protein translocation complex CH58_274 PF09584 CH58_274 CH58_2740 PF00467 KOW motif CH58_2740 PF02357 Transcription termination factor nusG CH58_2741 PF00298 Ribosomal protein L11, RNA binding domain CH58_2741 PF03946 Ribosomal protein L11, N-terminal domain CH58_2742 PF00687 Ribosomal protein L1p/L10e family CH58_2743 PF00466 Ribosomal protein L10 CH58_2744 PF00542 Ribosomal protein L7/L12 C-terminal domain CH58_2744 PF16320 CH58_2744 CH58_2745 PF00562 RNA polymerase Rpb2, domain 6 CH58_2745 PF04560 RNA polymerase Rpb2, domain 7 CH58_2745 PF04561 RNA polymerase Rpb2, domain 2 CH58_2745 PF04563 RNA polymerase beta subunit CH58_2745 PF04565 RNA polymerase Rpb2, domain 3 CH58_2745 PF10385 RNA polymerase beta subunit external 1 domain CH58_2746 PF00623 RNA polymerase Rpb1, domain 2 CH58_2746 PF04983 RNA polymerase Rpb1, domain 3 CH58_2746 PF04997 RNA polymerase Rpb1, domain 1 CH58_2746 PF04998 RNA polymerase Rpb1, domain 5 CH58_2746 PF05000 RNA polymerase Rpb1, domain 4 CH58_2747 PF01797 Transposase IS200 like CH58_2748 PF04055 Radical SAM superfamily CH58_2748 PF06968 Biotin and Thiamin Synthesis associated domain CH58_2749 PF05690 Thiazole biosynthesis protein ThiG CH58_275 PF04024 CH58_275 CH58_2750 PF02597 ThiS family CH58_2751 PF00899 ThiF family CH58_2752 PF02581 Thiamine monophosphate synthase/TENI CH58_2753 PF01964 ThiC family CH58_2753 PF13667 ThiC-associated domain CH58_2754 PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ CH58_2755 PF00293 NUDIX domain CH58_2755 PF09297 NADH pyrophosphatase zinc ribbon domain CH58_2757 PF01208 Uroporphyrinogen decarboxylase (URO-D) CH58_2758 PF04493 Endonuclease V CH58_2759 PF04222 Protein of unknown function (DUF416) CH58_276 PF06667 CH58_276 CH58_2760 PF00216 Bacterial DNA-binding protein CH58_2761 PF07356 CH58_2761 CH58_2762 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain CH58_2762 PF02843 Phosphoribosylglycinamide synthetase, C domain CH58_2762 PF02844 Phosphoribosylglycinamide synthetase, N domain CH58_2763 PF01808 AICARFT/IMPCHase bienzyme CH58_2763 PF02142 MGS-like domain CH58_277 PF04012 CH58_277 CH58_2770 PF01527 Transposase CH58_2771 PF13276 CH58_2771 CH58_2771 PF13683 CH58_2771 CH58_2773 PF01695 IstB-like ATP binding protein CH58_2775 PF00665 Integrase core domain CH58_2775 PF02796 Helix-turn-helix domain of resolvase CH58_2776 PF05943 CH58_2776 CH58_2777 PF05638 Protein of unknown function (DUF796) CH58_2778 PF04965 Gene 25-like lysozyme CH58_2779 PF05947 CH58_2779 CH58_278 PF00158 Sigma-54 interaction domain CH58_278 PF02954 Bacterial regulatory protein, Fis family CH58_2780 PF06996 CH58_2780 CH58_2781 PF00004 ATPase family associated with various cellular activities (AAA) CH58_2781 PF02861 Clp amino terminal domain CH58_2781 PF07724 AAA domain (Cdc48 subfamily) CH58_2782 PF05954 Phage late control gene D protein (GPD) CH58_2785 PF00805 Pentapeptide repeats (8 copies) CH58_2785 PF13599 Pentapeptide repeats (9 copies) CH58_2786 PF12059 CH58_2786 CH58_2787 PF13665 CH58_2787 CH58_2788 PF12790 Type VI secretion lipoprotein CH58_2789 PF05936 CH58_2789 CH58_279 PF01797 Transposase IS200 like CH58_2790 PF00691 OmpA family CH58_2790 PF09850 Uncharacterized protein conserved in bacteria (DUF2077) CH58_2791 PF06744 CH58_2791 CH58_2791 PF06761 CH58_2791 CH58_2791 PF14331 CH58_2791 CH58_2793 PF00176 SNF2 family N-terminal domain CH58_2793 PF00271 Helicase conserved C-terminal domain CH58_2793 PF12137 RNA polymerase recycling family C-terminal CH58_2794 PF00136 DNA polymerase family B CH58_2794 PF03104 DNA polymerase family B, exonuclease domain CH58_2795 PF09335 CH58_2795 CH58_2796 PF00005 ABC transporter CH58_2797 PF00528 Binding-protein-dependent transport system inner membrane component CH58_2798 PF13343 Bacterial extracellular solute-binding protein CH58_28 PF03776 Septum formation topological specificity factor MinE CH58_280 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CH58_2800 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CH58_2800 PF12793 CH58_2800 CH58_2801 PF07690 Major Facilitator Superfamily CH58_2802 PF01695 IstB-like ATP binding protein CH58_2803 PF00665 Integrase core domain CH58_2803 PF02796 Helix-turn-helix domain of resolvase CH58_2805 PF00694 Aconitase C-terminal domain CH58_2806 PF00330 Aconitase family (aconitate hydratase) CH58_2807 PF00180 Isocitrate/isopropylmalate dehydrogenase CH58_2808 PF00682 HMGL-like CH58_2808 PF08502 LeuA allosteric (dimerisation) domain CH58_2809 PF01797 Transposase IS200 like CH58_281 PF00528 Binding-protein-dependent transport system inner membrane component CH58_2811 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH58_2811 PF03466 LysR substrate binding domain CH58_2812 PF00501 AMP-binding enzyme CH58_2813 PF00205 Thiamine pyrophosphate enzyme, central domain CH58_2813 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CH58_2813 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CH58_2814 PF01842 ACT domain CH58_2814 PF10369 Small subunit of acetolactate synthase CH58_2815 PF01797 Transposase IS200 like CH58_2816 PF00356 Bacterial regulatory proteins, lacI family CH58_2816 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family CH58_2817 PF06610 CH58_2817 CH58_2818 PF02381 MraZ protein CH58_2819 PF01795 MraW methylase family CH58_282 PF00528 Binding-protein-dependent transport system inner membrane component CH58_282 PF12911 CH58_282 CH58_2820 PF04999 CH58_2820 CH58_2821 PF00905 Penicillin binding protein transpeptidase domain CH58_2821 PF03717 Penicillin-binding Protein dimerisation domain CH58_2822 PF01225 Mur ligase family, catalytic domain CH58_2822 PF02875 Mur ligase family, glutamate ligase domain CH58_2822 PF08245 Mur ligase middle domain CH58_2823 PF01225 Mur ligase family, catalytic domain CH58_2823 PF02875 Mur ligase family, glutamate ligase domain CH58_2823 PF08245 Mur ligase middle domain CH58_2824 PF00953 Glycosyl transferase family 4 CH58_2824 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 CH58_2825 PF02875 Mur ligase family, glutamate ligase domain CH58_2825 PF08245 Mur ligase middle domain CH58_2826 PF01098 CH58_2826 CH58_2827 PF03033 Glycosyltransferase family 28 N-terminal domain CH58_2827 PF04101 Glycosyltransferase family 28 C-terminal domain CH58_2828 PF01225 Mur ligase family, catalytic domain CH58_2828 PF02875 Mur ligase family, glutamate ligase domain CH58_2828 PF08245 Mur ligase middle domain CH58_2829 PF01820 D-ala D-ala ligase N-terminus CH58_2829 PF07478 D-ala D-ala ligase C-terminus CH58_283 PF00005 ABC transporter CH58_283 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CH58_2830 PF03799 Cell division protein FtsQ CH58_2830 PF08478 POTRA domain, FtsQ-type CH58_2831 PF02491 SHS2 domain inserted in FTSA CH58_2831 PF14450 Cell division protein FtsA CH58_2832 PF00091 Tubulin/FtsZ family, GTPase domain CH58_2832 PF12327 FtsZ family, C-terminal domain CH58_2833 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase CH58_2834 PF05258 CH58_2834 CH58_2835 PF06558 CH58_2835 CH58_2836 PF01043 SecA preprotein cross-linking domain CH58_2836 PF02810 SEC-C motif CH58_2836 PF07516 SecA Wing and Scaffold domain CH58_2836 PF07517 SecA DEAD-like domain CH58_2837 PF00293 NUDIX domain CH58_2838 PF01695 IstB-like ATP binding protein CH58_2839 PF00665 Integrase core domain CH58_2839 PF02796 Helix-turn-helix domain of resolvase CH58_284 PF00005 ABC transporter CH58_2849 PF04204 Homoserine O-succinyltransferase CH58_2850 PF01274 Malate synthase CH58_2851 PF00463 Isocitrate lyase family CH58_2852 PF06315 Isocitrate dehydrogenase kinase/phosphatase (AceK) CH58_2853 PF01614 Bacterial transcriptional regulator CH58_2854 PF09339 IclR helix-turn-helix domain CH58_2855 PF00809 Pterin binding enzyme CH58_2855 PF02310 B12 binding domain CH58_2855 PF02574 Homocysteine S-methyltransferase CH58_2855 PF02607 B12 binding domain CH58_2855 PF02965 Vitamin B12 dependent methionine synthase, activation domain CH58_2856 PF05860 haemagglutination activity domain CH58_2856 PF13332 CH58_2856 CH58_2857 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB CH58_2857 PF08479 POTRA domain, ShlB-type CH58_2857 PF17287 CH58_2857 CH58_2859 PF00696 Amino acid kinase family CH58_2860 PF00342 Phosphoglucose isomerase CH58_2861 PF06146 CH58_2861 CH58_2862 PF00528 Binding-protein-dependent transport system inner membrane component CH58_2863 PF00528 Binding-protein-dependent transport system inner membrane component CH58_2863 PF14785 Maltose transport system permease protein MalF P2 domain CH58_2864 PF13416 Bacterial extracellular solute-binding protein CH58_2866 PF00005 ABC transporter CH58_2866 PF08402 TOBE domain CH58_2867 PF02264 LamB porin CH58_2868 PF07148 CH58_2868 CH58_287 PF00854 POT family CH58_2870 PF05638 Protein of unknown function (DUF796) CH58_2871 PF05591 CH58_2871 CH58_2872 PF05943 CH58_2872 CH58_2873 PF04965 Gene 25-like lysozyme CH58_2874 PF00665 Integrase core domain CH58_2874 PF13276 CH58_2874 CH58_2875 PF05947 CH58_2875 CH58_2876 PF13518 Helix-turn-helix domain CH58_2877 PF00312 Ribosomal protein S15 CH58_2878 PF01509 TruB family pseudouridylate synthase (N terminal domain) CH58_2878 PF09157 Pseudouridine synthase II TruB, C-terminal CH58_2878 PF16198 CH58_2878 CH58_2879 PF02033 Ribosome-binding factor A CH58_288 PF06930 CH58_288 CH58_2880 PF00009 Elongation factor Tu GTP binding domain CH58_2880 PF03144 Elongation factor Tu domain 2 CH58_2880 PF04760 Translation initiation factor IF-2, N-terminal region CH58_2880 PF08364 CH58_2880 CH58_2880 PF11987 Translation-initiation factor 2 CH58_2881 PF08529 NusA N-terminal domain CH58_2881 PF13184 NusA-like KH domain CH58_2881 PF14520 Helix-hairpin-helix domain CH58_2882 PF02576 Uncharacterised BCR, YhbC family COG0779 CH58_2882 PF17384 CH58_2882 CH58_2885 PF03840 Preprotein translocase SecG subunit CH58_2886 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain CH58_2886 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I CH58_2886 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II CH58_2886 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III CH58_2887 PF00809 Pterin binding enzyme CH58_2888 PF00004 ATPase family associated with various cellular activities (AAA) CH58_2888 PF01434 Peptidase family M41 CH58_2888 PF06480 FtsH Extracellular CH58_2889 PF01728 FtsJ-like methyltransferase CH58_289 PF11656 CH58_289 CH58_2890 PF01985 CRS1 / YhbY (CRM) domain CH58_2891 PF01272 Transcription elongation factor, GreA/GreB, C-term CH58_2891 PF03449 Transcription elongation factor, N-terminal CH58_2892 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family CH58_2893 PF00072 Response regulator receiver domain CH58_2893 PF00486 Transcriptional regulatory protein, C terminal CH58_2894 PF00512 His Kinase A (phospho-acceptor) domain CH58_2894 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH58_2895 PF01018 GTP1/OBG CH58_2895 PF01926 50S ribosome-binding GTPase CH58_2896 PF00892 EamA-like transporter family CH58_2897 PF01016 Ribosomal L27 protein CH58_2898 PF00829 Ribosomal prokaryotic L21 protein CH58_2899 PF00348 Polyprenyl synthetase CH58_29 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain CH58_290 PF08543 Phosphomethylpyrimidine kinase CH58_2900 PF02316 Mu DNA-binding domain CH58_2901 PF13693 Winged helix-turn-helix DNA-binding CH58_2902 PF00056 lactate/malate dehydrogenase, NAD binding domain CH58_2902 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain CH58_2903 PF01316 Arginine repressor, DNA binding domain CH58_2903 PF02863 Arginine repressor, C-terminal domain CH58_2904 PF07338 Protein of unknown function (DUF1471) CH58_2905 PF01225 Mur ligase family, catalytic domain CH58_2905 PF02875 Mur ligase family, glutamate ligase domain CH58_2905 PF08245 Mur ligase middle domain CH58_2906 PF00316 Fructose-1-6-bisphosphatase CH58_2907 PF00719 Inorganic pyrophosphatase CH58_2908 PF06094 AIG2-like family CH58_2909 PF04357 CH58_2909 CH58_291 PF00579 tRNA synthetases class I (W and Y) CH58_291 PF01479 S4 domain CH58_2910 PF01103 Surface antigen CH58_2910 PF07244 Surface antigen variable number repeat CH58_2910 PF17243 CH58_2910 CH58_2911 PF01625 Peptide methionine sulfoxide reductase CH58_2912 PF00571 CBS domain CH58_2912 PF01595 CH58_2912 CH58_2912 PF03471 Transporter associated domain CH58_2913 PF06526 Protein of unknown function (DUF1107) CH58_2914 PF09695 CH58_2914 CH58_2915 PF00459 Inositol monophosphatase family CH58_2916 PF00149 Calcineurin-like phosphoesterase CH58_2916 PF02872 5'-nucleotidase, C-terminal domain CH58_2917 PF01814 Hemerythrin HHE cation binding domain CH58_2917 PF04405 CH58_2917 CH58_2918 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CH58_2918 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase CH58_2919 PF04225 Opacity-associated protein A LysM-like domain CH58_2919 PF08525 CH58_2919 CH58_292 PF01243 Pyridoxamine 5'-phosphate oxidase CH58_292 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region CH58_2920 PF12582 CH58_2920 CH58_2921 PF01797 Transposase IS200 like CH58_2922 PF01281 Ribosomal protein L9, N-terminal domain CH58_2922 PF03948 Ribosomal protein L9, C-terminal domain CH58_2923 PF01084 Ribosomal protein S18 CH58_2924 PF01250 Ribosomal protein S6 CH58_2926 PF00326 Prolyl oligopeptidase family CH58_2927 PF00665 Integrase core domain CH58_2927 PF02796 Helix-turn-helix domain of resolvase CH58_2928 PF01695 IstB-like ATP binding protein CH58_2929 PF13518 Helix-turn-helix domain CH58_293 PF09864 Membrane-bound lysozyme-inhibitor of c-type lysozyme CH58_2930 PF00311 Phosphoenolpyruvate carboxylase CH58_2931 PF01546 Peptidase family M20/M25/M40 CH58_2931 PF07687 Peptidase dimerisation domain CH58_2932 PF01118 Semialdehyde dehydrogenase, NAD binding domain CH58_2932 PF02774 Semialdehyde dehydrogenase, dimerisation domain CH58_2933 PF00696 Amino acid kinase family CH58_2934 PF00206 Lyase CH58_2934 PF14698 Argininosuccinate lyase C-terminal CH58_2936 PF00593 TonB dependent receptor CH58_2936 PF07715 TonB-dependent Receptor Plug Domain CH58_2937 PF06438 Heme-binding protein A (HasA) CH58_2938 PF00005 ABC transporter CH58_2938 PF00664 ABC transporter transmembrane region CH58_2939 PF13437 HlyD family secretion protein CH58_2939 PF13533 Biotin-lipoyl like CH58_294 PF03702 Uncharacterised protein family (UPF0075) CH58_2940 PF03544 Gram-negative bacterial TonB protein C-terminal CH58_2941 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CH58_2941 PF07992 Pyridine nucleotide-disulphide oxidoreductase CH58_2942 PF00462 Glutaredoxin CH58_2942 PF08534 Redoxin CH58_2943 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CH58_2943 PF07992 Pyridine nucleotide-disulphide oxidoreductase CH58_2944 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH58_2944 PF03466 LysR substrate binding domain CH58_2945 PF00440 Bacterial regulatory proteins, tetR family CH58_2946 PF07226 CH58_2946 CH58_2947 PF05958 tRNA (Uracil-5-)-methyltransferase CH58_2948 PF00593 TonB dependent receptor CH58_2948 PF07715 TonB-dependent Receptor Plug Domain CH58_2949 PF01177 Asp/Glu/Hydantoin racemase CH58_295 PF05433 CH58_295 CH58_2956 PF13407 Periplasmic binding protein domain CH58_2957 PF00005 ABC transporter CH58_2958 PF02653 CH58_2958 CH58_2959 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH58_2959 PF03466 LysR substrate binding domain CH58_296 PF01047 MarR family CH58_2960 PF02653 CH58_2960 CH58_2961 PF04219 CH58_2961 CH58_2962 PF01078 Magnesium chelatase, subunit ChlI CH58_2962 PF13335 CH58_2962 CH58_2962 PF13541 Subunit ChlI of Mg-chelatase CH58_2963 PF00205 Thiamine pyrophosphate enzyme, central domain CH58_2963 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CH58_2963 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CH58_2964 PF13710 ACT domain CH58_2965 PF01063 Aminotransferase class IV CH58_2966 PF00920 Dehydratase family CH58_2967 PF00291 Pyridoxal-phosphate dependent enzyme CH58_2967 PF00585 C-terminal regulatory domain of Threonine dehydratase CH58_2968 PF06092 CH58_2968 CH58_2969 PF06092 CH58_2969 CH58_297 PF00248 Aldo/keto reductase family CH58_2973 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH58_2973 PF03466 LysR substrate binding domain CH58_2974 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain CH58_2974 PF07991 Acetohydroxy acid isomeroreductase, catalytic domain CH58_2976 PF06958 S-type Pyocin CH58_2979 PF01320 Colicin immunity protein / pyocin immunity protein CH58_298 PF06945 CH58_298 CH58_2980 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain CH58_2980 PF02753 Pili assembly chaperone PapD, C-terminal domain CH58_2981 PF00419 Fimbrial protein CH58_2982 PF00577 Outer membrane usher protein CH58_2982 PF13953 PapC C-terminal domain CH58_2982 PF13954 PapC N-terminal domain CH58_2983 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain CH58_2983 PF02753 Pili assembly chaperone PapD, C-terminal domain CH58_2984 PF16970 CH58_2984 CH58_2985 PF00872 CH58_2985 CH58_2986 PF05096 Glutamine cyclotransferase CH58_2987 PF13616 PPIC-type PPIASE domain CH58_2988 PF00580 UvrD/REP helicase N-terminal domain CH58_2988 PF13361 UvrD-like helicase C-terminal domain CH58_299 PF00884 Sulfatase CH58_299 PF08019 CH58_299 CH58_2991 PF00270 DEAD/DEAH box helicase CH58_2991 PF00271 Helicase conserved C-terminal domain CH58_2992 PF00085 Thioredoxin CH58_2993 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CH58_2993 PF07497 Rho termination factor, RNA-binding domain CH58_2993 PF07498 Rho termination factor, N-terminal domain CH58_2994 PF00953 Glycosyl transferase family 4 CH58_2995 PF02706 Chain length determinant protein CH58_2996 PF02350 UDP-N-acetylglucosamine 2-epimerase CH58_2997 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain CH58_2997 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain CH58_2997 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain CH58_2998 PF16363 CH58_2998 CH58_2999 PF00483 Nucleotidyl transferase CH58_3 PF00152 tRNA synthetases class II (D, K and N) CH58_3 PF01336 OB-fold nucleic acid binding domain CH58_3 PF02938 GAD domain CH58_30 PF03775 Septum formation inhibitor MinC, C-terminal domain CH58_30 PF05209 Septum formation inhibitor MinC, N-terminal domain CH58_300 PF00440 Bacterial regulatory proteins, tetR family CH58_300 PF16925 CH58_300 CH58_3000 PF00583 Acetyltransferase (GNAT) family CH58_3001 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family CH58_3002 PF01943 CH58_3002 CH58_3003 PF07429 CH58_3003 CH58_3004 PF06899 CH58_3004 CH58_3005 PF03808 CH58_3005 CH58_3006 PF00324 Amino acid permease CH58_301 PF00724 NADH:flavin oxidoreductase / NADH oxidase family CH58_3012 PF00665 Integrase core domain CH58_3012 PF02796 Helix-turn-helix domain of resolvase CH58_3013 PF01695 IstB-like ATP binding protein CH58_3014 PF01797 Transposase IS200 like CH58_3015 PF07219 CH58_3015 CH58_3016 PF04375 CH58_3016 CH58_3017 PF02602 Uroporphyrinogen-III synthase HemD CH58_3018 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain CH58_3018 PF03900 Porphobilinogen deaminase, C-terminal domain CH58_3019 PF01295 CH58_3019 CH58_3019 PF12633 CH58_3019 CH58_3020 PF01491 Frataxin-like domain CH58_3021 PF13627 CH58_3021 CH58_3022 PF01678 Diaminopimelate epimerase CH58_3023 PF04340 Protein of unknown function, DUF484 CH58_3024 PF00589 Phage integrase family CH58_3024 PF02899 Phage integrase, N-terminal SAM-like domain CH58_3025 PF00702 haloacid dehalogenase-like hydrolase CH58_3026 PF00580 UvrD/REP helicase N-terminal domain CH58_3026 PF13361 UvrD-like helicase C-terminal domain CH58_3027 PF00440 Bacterial regulatory proteins, tetR family CH58_3028 PF06792 Uncharacterised protein family (UPF0261) CH58_3029 PF09370 TIM-barrel signal transduction protein CH58_303 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CH58_3030 PF01544 CorA-like Mg2+ transporter protein CH58_3031 PF00892 EamA-like transporter family CH58_3032 PF03061 Thioesterase superfamily CH58_3033 PF02253 Phospholipase A1 CH58_3034 PF00270 DEAD/DEAH box helicase CH58_3034 PF00271 Helicase conserved C-terminal domain CH58_3034 PF00570 HRDC domain CH58_3034 PF09382 RQC domain CH58_3034 PF16124 CH58_3034 CH58_3035 PF01810 CH58_3035 CH58_3036 PF01810 CH58_3036 CH58_3037 PF12146 Putative lysophospholipase CH58_3038 PF08282 haloacid dehalogenase-like hydrolase CH58_3039 PF03272 CH58_3039 CH58_304 PF00929 Exonuclease CH58_3040 PF03009 Glycerophosphoryl diester phosphodiesterase family CH58_3041 PF01266 FAD dependent oxidoreductase CH58_3041 PF04324 BFD-like [2Fe-2S] binding domain CH58_3042 PF00890 FAD binding domain CH58_3043 PF02754 CH58_3043 CH58_3044 PF08786 Domain of unknown function (DUF1795) CH58_3045 PF02592 CH58_3045 CH58_3046 PF01206 Sulfurtransferase TusA CH58_3047 PF00122 E1-E2 ATPase CH58_3047 PF00403 Heavy-metal-associated domain CH58_3047 PF00702 haloacid dehalogenase-like hydrolase CH58_3048 PF07947 CH58_3048 CH58_3049 PF08850 CH58_3049 CH58_305 PF00462 Glutaredoxin CH58_3050 PF10694 Protein of unknown function (DUF2500) CH58_3051 PF06611 CH58_3051 CH58_3052 PF03602 Conserved hypothetical protein 95 CH58_3053 PF00448 SRP54-type protein, GTPase domain CH58_3053 PF02881 SRP54-type protein, helical bundle domain CH58_3054 PF00005 ABC transporter CH58_3055 PF02687 CH58_3055 CH58_3056 PF00140 Sigma-70 factor, region 1 CH58_3056 PF04542 Sigma-70 region 2 CH58_3056 PF04545 Sigma-70, region 4 CH58_3057 PF01797 Transposase IS200 like CH58_3058 PF12568 Acetyltransferase (GNAT) domain CH58_3059 PF13458 Periplasmic binding protein CH58_3060 PF01695 IstB-like ATP binding protein CH58_3061 PF00665 Integrase core domain CH58_3061 PF02796 Helix-turn-helix domain of resolvase CH58_3062 PF02653 CH58_3062 CH58_3063 PF02653 CH58_3063 CH58_3063 PF11862 CH58_3063 CH58_3064 PF00005 ABC transporter CH58_3064 PF12399 Branched-chain amino acid ATP-binding cassette transporter CH58_3065 PF00005 ABC transporter CH58_307 PF00877 NlpC/P60 family CH58_3071 PF16967 CH58_3071 CH58_3072 PF04449 CS1 type fimbrial major subunit CH58_3073 PF13416 Bacterial extracellular solute-binding protein CH58_3074 PF00528 Binding-protein-dependent transport system inner membrane component CH58_3075 PF00528 Binding-protein-dependent transport system inner membrane component CH58_3076 PF00005 ABC transporter CH58_3076 PF08402 TOBE domain CH58_3077 PF03009 Glycerophosphoryl diester phosphodiesterase family CH58_3078 PF03547 CH58_3078 CH58_3079 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH58_3079 PF03466 LysR substrate binding domain CH58_308 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain CH58_308 PF02777 Iron/manganese superoxide dismutases, C-terminal domain CH58_3080 PF00892 EamA-like transporter family CH58_3081 PF01717 Cobalamin-independent synthase, Catalytic domain CH58_3081 PF08267 Cobalamin-independent synthase, N-terminal domain CH58_3082 PF01738 Dienelactone hydrolase family CH58_3083 PF01048 Phosphorylase superfamily CH58_3084 PF13350 Tyrosine phosphatase family CH58_3085 PF02554 CH58_3085 CH58_3085 PF13722 CH58_3085 CH58_3086 PF09335 CH58_3086 CH58_3087 PF02646 CH58_3087 CH58_3088 PF01209 ubiE/COQ5 methyltransferase family CH58_3089 PF02036 SCP-2 sterol transfer family CH58_3090 PF03109 CH58_3090 CH58_3091 PF02416 mttA/Hcf106 family CH58_3093 PF00902 Sec-independent protein translocase protein (TatC) CH58_3094 PF01026 TatD related DNase CH58_3095 PF00665 Integrase core domain CH58_3095 PF02796 Helix-turn-helix domain of resolvase CH58_3096 PF01695 IstB-like ATP binding protein CH58_3097 PF14016 CH58_3097 CH58_3098 PF03737 Demethylmenaquinone methyltransferase CH58_3099 PF01040 UbiA prenyltransferase family CH58_31 PF05166 YcgL domain CH58_310 PF00356 Bacterial regulatory proteins, lacI family CH58_310 PF13377 Periplasmic binding protein-like domain CH58_3100 PF00004 ATPase family associated with various cellular activities (AAA) CH58_3100 PF07724 AAA domain (Cdc48 subfamily) CH58_3100 PF10431 C-terminal, D2-small domain, of ClpB protein CH58_3101 PF00227 Proteasome subunit CH58_3102 PF05036 Sporulation related domain CH58_3103 PF00356 Bacterial regulatory proteins, lacI family CH58_3103 PF13377 Periplasmic binding protein-like domain CH58_3105 PF00270 DEAD/DEAH box helicase CH58_3105 PF00271 Helicase conserved C-terminal domain CH58_3106 PF01197 Ribosomal protein L31 CH58_3107 PF05360 CH58_3107 CH58_3108 PF01340 Met Apo-repressor, MetJ CH58_3109 PF01053 Cys/Met metabolism PLP-dependent enzyme CH58_311 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH58_311 PF03466 LysR substrate binding domain CH58_3110 PF01053 Cys/Met metabolism PLP-dependent enzyme CH58_3111 PF00696 Amino acid kinase family CH58_3111 PF00742 Homoserine dehydrogenase CH58_3111 PF03447 Homoserine dehydrogenase, NAD binding domain CH58_3112 PF02219 Methylenetetrahydrofolate reductase CH58_3113 PF00665 Integrase core domain CH58_3113 PF13276 CH58_3113 CH58_3114 PF13518 Helix-turn-helix domain CH58_3115 PF13347 MFS/sugar transport protein CH58_3116 PF00593 TonB dependent receptor CH58_3116 PF07715 TonB-dependent Receptor Plug Domain CH58_3117 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) CH58_3118 PF04183 IucA / IucC family CH58_3118 PF06276 Ferric iron reductase FhuF-like transporter CH58_3119 PF13523 Acetyltransferase (GNAT) domain CH58_312 PF07690 Major Facilitator Superfamily CH58_3120 PF04183 IucA / IucC family CH58_3120 PF06276 Ferric iron reductase FhuF-like transporter CH58_3121 PF04183 IucA / IucC family CH58_3122 PF07690 Major Facilitator Superfamily CH58_3123 PF00775 Dioxygenase CH58_3124 PF10503 Esterase PHB depolymerase CH58_3125 PF00765 Autoinducer synthetase CH58_3126 PF00196 Bacterial regulatory proteins, luxR family CH58_3126 PF03472 Autoinducer binding domain CH58_3128 PF02517 CAAX protease self-immunity CH58_313 PF02353 Mycolic acid cyclopropane synthetase CH58_3130 PF03811 CH58_3130 CH58_3130 PF12759 CH58_3130 CH58_3133 PF05591 CH58_3133 CH58_3134 PF05943 CH58_3134 CH58_3135 PF05936 CH58_3135 CH58_3136 PF09850 Uncharacterized protein conserved in bacteria (DUF2077) CH58_3137 PF00691 OmpA family CH58_3138 PF05638 Protein of unknown function (DUF796) CH58_3139 PF00004 ATPase family associated with various cellular activities (AAA) CH58_3139 PF07724 AAA domain (Cdc48 subfamily) CH58_3139 PF10431 C-terminal, D2-small domain, of ClpB protein CH58_314 PF00677 Lumazine binding domain CH58_3140 PF05954 Phage late control gene D protein (GPD) CH58_3140 PF10106 CH58_3140 CH58_3140 PF13296 CH58_3140 CH58_3142 PF03811 CH58_3142 CH58_3142 PF12759 CH58_3142 CH58_3143 PF10106 CH58_3143 CH58_3144 PF01551 Peptidase family M23 CH58_3146 PF03811 CH58_3146 CH58_3146 PF12759 CH58_3146 CH58_3147 PF03400 CH58_3147 CH58_3148 PF10106 CH58_3148 CH58_3149 PF00589 Phage integrase family CH58_315 PF01554 MatE CH58_3151 PF01276 Orn/Lys/Arg decarboxylase, major domain CH58_3151 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain CH58_3151 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain CH58_3152 PF13407 Periplasmic binding protein domain CH58_3153 PF00005 ABC transporter CH58_3154 PF02653 CH58_3154 CH58_3155 PF00593 TonB dependent receptor CH58_3155 PF07715 TonB-dependent Receptor Plug Domain CH58_3156 PF01497 Periplasmic binding protein CH58_3157 PF01464 Transglycosylase SLT domain CH58_3157 PF11873 Domain of unknown function (DUF3393) CH58_3158 PF04362 Bacterial Fe(2+) trafficking CH58_3159 PF00633 Helix-hairpin-helix motif CH58_3159 PF00730 HhH-GPD superfamily base excision DNA repair protein CH58_3159 PF10576 Iron-sulfur binding domain of endonuclease III CH58_3159 PF14815 NUDIX domain CH58_3160 PF02390 Putative methyltransferase CH58_3161 PF04320 CH58_3161 CH58_3162 PF04960 Glutaminase CH58_3163 PF11101 CH58_3163 CH58_3164 PF11101 CH58_3164 CH58_3167 PF04055 Radical SAM superfamily CH58_3167 PF06969 HemN C-terminal domain CH58_3168 PF01725 Ham1 family CH58_3169 PF02594 Uncharacterised ACR, YggU family COG1872 CH58_3170 PF02325 CH58_3170 CH58_3171 PF03807 NADP oxidoreductase coenzyme F420-dependent CH58_3171 PF14748 Pyrroline-5-carboxylate reductase dimerisation CH58_3172 PF01168 Alanine racemase, N-terminal domain CH58_3173 PF00437 Type II/IV secretion system protein CH58_3174 PF04371 Porphyromonas-type peptidyl-arginine deiminase CH58_3175 PF00795 Carbon-nitrogen hydrolase CH58_3176 PF03652 Uncharacterised protein family (UPF0081) CH58_3177 PF02622 Uncharacterized ACR, COG1678 CH58_3178 PF02951 Prokaryotic glutathione synthetase, N-terminal domain CH58_3178 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain CH58_3179 PF04452 RNA methyltransferase CH58_318 PF00224 Pyruvate kinase, barrel domain CH58_318 PF02887 Pyruvate kinase, alpha/beta domain CH58_3180 PF04231 Endonuclease I CH58_3181 PF10263 CH58_3181 CH58_3181 PF17283 CH58_3181 CH58_3182 PF00438 S-adenosylmethionine synthetase, N-terminal domain CH58_3182 PF02772 S-adenosylmethionine synthetase, central domain CH58_3182 PF02773 S-adenosylmethionine synthetase, C-terminal domain CH58_3184 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain CH58_3185 PF01797 Transposase IS200 like CH58_3186 PF00355 Rieske [2Fe-2S] domain CH58_3187 PF01435 Peptidase family M48 CH58_3188 PF00456 Transketolase, thiamine diphosphate binding domain CH58_3188 PF02779 Transketolase, pyrimidine binding domain CH58_3188 PF02780 Transketolase, C-terminal domain CH58_319 PF04728 Lipoprotein leucine-zipper CH58_3190 PF01797 Transposase IS200 like CH58_3191 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain CH58_3191 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain CH58_3192 PF00162 Phosphoglycerate kinase CH58_3193 PF01116 Fructose-bisphosphate aldolase class-II CH58_3194 PF00924 Mechanosensitive ion channel CH58_3194 PF05552 Conserved TM helix CH58_3195 PF01810 CH58_3195 CH58_3196 PF01695 IstB-like ATP binding protein CH58_3197 PF00665 Integrase core domain CH58_3197 PF02796 Helix-turn-helix domain of resolvase CH58_3198 PF04402 Protein of unknown function (DUF541) CH58_3199 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH58_3199 PF03466 LysR substrate binding domain CH58_32 PF13406 Transglycosylase SLT domain CH58_320 PF01797 Transposase IS200 like CH58_3200 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) CH58_3201 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CH58_3201 PF01842 ACT domain CH58_3201 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CH58_3202 PF01812 5-formyltetrahydrofolate cyclo-ligase family CH58_3203 PF05164 Cell division protein ZapA CH58_3204 PF03695 Uncharacterised protein family (UPF0149) CH58_3205 PF00557 Metallopeptidase family M24 CH58_3205 PF05195 Aminopeptidase P, N-terminal domain CH58_3206 PF01494 FAD binding domain CH58_3207 PF01494 FAD binding domain CH58_3208 PF01571 Aminomethyltransferase folate-binding domain CH58_3208 PF08669 Glycine cleavage T-protein C-terminal barrel domain CH58_3209 PF01597 Glycine cleavage H-protein CH58_321 PF00665 Integrase core domain CH58_321 PF02796 Helix-turn-helix domain of resolvase CH58_3210 PF02347 Glycine cleavage system P-protein CH58_3211 PF13924 CH58_3211 CH58_3213 PF03895 YadA-like C-terminal region CH58_3213 PF05658 Head domain of trimeric autotransporter adhesin CH58_3213 PF05662 Coiled stalk of trimeric autotransporter adhesin CH58_3215 PF03006 CH58_3215 CH58_3216 PF09933 CH58_3216 CH58_3217 PF01571 Aminomethyltransferase folate-binding domain CH58_3218 PF03937 Flavinator of succinate dehydrogenase CH58_3219 PF00072 Response regulator receiver domain CH58_3219 PF00486 Transcriptional regulatory protein, C terminal CH58_322 PF01695 IstB-like ATP binding protein CH58_3220 PF00512 His Kinase A (phospho-acceptor) domain CH58_3220 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH58_3220 PF14827 Sensory domain of two-component sensor kinase CH58_3221 PF06123 CH58_3221 CH58_3222 PF00258 Flavodoxin CH58_3223 PF00589 Phage integrase family CH58_3223 PF02899 Phage integrase, N-terminal SAM-like domain CH58_3224 PF10411 Disulfide bond isomerase protein N-terminus CH58_3224 PF13098 Thioredoxin-like domain CH58_3225 PF01368 DHH family CH58_3225 PF02272 DHHA1 domain CH58_3226 PF00472 RF-1 domain CH58_3226 PF03462 PCRF domain CH58_3227 PF00152 tRNA synthetases class II (D, K and N) CH58_3227 PF01336 OB-fold nucleic acid binding domain CH58_3229 PF13356 Domain of unknown function (DUF4102) CH58_323 PF03734 L,D-transpeptidase catalytic domain CH58_3230 PF01695 IstB-like ATP binding protein CH58_3231 PF00665 Integrase core domain CH58_3231 PF02796 Helix-turn-helix domain of resolvase CH58_3232 PF00589 Phage integrase family CH58_3234 PF05016 Plasmid stabilisation system protein CH58_3235 PF01381 Helix-turn-helix CH58_3236 PF15723 CH58_3236 CH58_3237 PF15731 CH58_3237 CH58_3238 PF03288 Poxvirus D5 protein-like CH58_3238 PF08273 Zinc-binding domain of primase-helicase CH58_3238 PF08706 CH58_3238 CH58_3238 PF13362 Toprim domain CH58_3239 PF05973 CH58_3239 CH58_324 PF02657 Fe-S metabolism associated domain CH58_3240 PF05930 Prophage CP4-57 regulatory protein (AlpA) CH58_3244 PF02661 Fic/DOC family CH58_3245 PF05488 PAAR motif CH58_3245 PF06958 S-type Pyocin CH58_3246 PF14206 CH58_3246 CH58_3248 PF09204 Bacterial self-protective colicin-like immunity CH58_325 PF00266 Aminotransferase class-V CH58_3250 PF11340 CH58_3250 CH58_3252 PF05488 PAAR motif CH58_3253 PF12977 Domain of Unknown Function with PDB structure (DUF3861) CH58_3254 PF03551 Transcriptional regulator PadR-like family CH58_3255 PF05708 Orthopoxvirus protein of unknown function (DUF830) CH58_3257 PF13407 Periplasmic binding protein domain CH58_3258 PF02653 CH58_3258 CH58_3259 PF00005 ABC transporter CH58_326 PF01458 Uncharacterized protein family (UPF0051) CH58_3260 PF00005 ABC transporter CH58_3260 PF08402 TOBE domain CH58_3261 PF13416 Bacterial extracellular solute-binding protein CH58_3262 PF00528 Binding-protein-dependent transport system inner membrane component CH58_3263 PF00528 Binding-protein-dependent transport system inner membrane component CH58_3264 PF07745 Glycosyl hydrolase family 53 CH58_3265 PF02449 Beta-galactosidase CH58_3265 PF08532 Beta-galactosidase trimerisation domain CH58_3265 PF08533 Beta-galactosidase C-terminal domain CH58_3266 PF00367 phosphotransferase system, EIIB CH58_3267 PF02264 LamB porin CH58_3268 PF00356 Bacterial regulatory proteins, lacI family CH58_3268 PF13377 Periplasmic binding protein-like domain CH58_3269 PF01055 Glycosyl hydrolases family 31 CH58_3269 PF13802 Galactose mutarotase-like CH58_3269 PF17137 CH58_3269 CH58_327 PF00005 ABC transporter CH58_3270 PF07690 Major Facilitator Superfamily CH58_3271 PF00356 Bacterial regulatory proteins, lacI family CH58_3271 PF13377 Periplasmic binding protein-like domain CH58_3272 PF01965 DJ-1/PfpI family CH58_3274 PF01116 Fructose-bisphosphate aldolase class-II CH58_3275 PF10022 CH58_3275 CH58_3276 PF00884 Sulfatase CH58_3277 PF04055 Radical SAM superfamily CH58_3277 PF13186 Iron-sulfur cluster-binding domain CH58_3278 PF07470 Glycosyl Hydrolase Family 88 CH58_3279 PF13561 Enoyl-(Acyl carrier protein) reductase CH58_328 PF01458 Uncharacterized protein family (UPF0051) CH58_3280 PF01979 Amidohydrolase family CH58_3281 PF03610 PTS system fructose IIA component CH58_3282 PF03613 CH58_3282 CH58_3283 PF03609 CH58_3283 CH58_3284 PF03830 PTS system sorbose subfamily IIB component CH58_3285 PF01380 SIS domain CH58_3286 PF08013 Tagatose 6 phosphate kinase CH58_3287 PF00455 CH58_3287 CH58_3287 PF08220 DeoR-like helix-turn-helix domain CH58_3288 PF00884 Sulfatase CH58_3289 PF01797 Transposase IS200 like CH58_329 PF01521 Iron-sulphur cluster biosynthesis CH58_3290 PF00665 Integrase core domain CH58_3290 PF02796 Helix-turn-helix domain of resolvase CH58_3291 PF01695 IstB-like ATP binding protein CH58_3292 PF02278 Polysaccharide lyase family 8, super-sandwich domain CH58_3292 PF02884 Polysaccharide lyase family 8, C-terminal beta-sandwich domain CH58_3292 PF09092 Lyase, N terminal CH58_3292 PF09093 Lyase, catalytic CH58_3293 PF03797 Autotransporter beta-domain CH58_3294 PF16946 CH58_3294 CH58_3296 PF00484 Carbonic anhydrase CH58_3298 PF11356 Type IV pilus biogenesis CH58_3299 PF00263 CH58_3299 CH58_3299 PF03958 Bacterial type II/III secretion system short domain CH58_33 PF01557 Fumarylacetoacetate (FAA) hydrolase family CH58_330 PF03061 Thioesterase superfamily CH58_3300 PF00437 Type II/IV secretion system protein CH58_3302 PF00482 Type II secretion system (T2SS), protein F CH58_3305 PF07963 Prokaryotic N-terminal methylation motif CH58_3306 PF02501 Type II secretion system (T2SS), protein I CH58_3307 PF07963 Prokaryotic N-terminal methylation motif CH58_3307 PF11612 Type II secretion system (T2SS), protein J CH58_3308 PF03934 Type II secretion system (T2SS), protein K CH58_3309 PF05134 Type II secretion system (T2SS), protein L CH58_3309 PF12693 GspL periplasmic domain CH58_331 PF01565 FAD binding domain CH58_331 PF02913 FAD linked oxidases, C-terminal domain CH58_331 PF13183 4Fe-4S dicluster domain CH58_3311 PF01478 Type IV leader peptidase family CH58_3311 PF06750 CH58_3311 CH58_3312 PF09691 Bacterial chaperone lipoprotein (PulS_OutS) CH58_3315 PF01323 DSBA-like thioredoxin domain CH58_3316 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CH58_3316 PF02203 Tar ligand binding domain homologue CH58_3317 PF00753 Metallo-beta-lactamase superfamily CH58_3318 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH58_3318 PF03466 LysR substrate binding domain CH58_3319 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH58_3319 PF03466 LysR substrate binding domain CH58_332 PF01594 CH58_332 CH58_3320 PF07690 Major Facilitator Superfamily CH58_3321 PF00356 Bacterial regulatory proteins, lacI family CH58_3321 PF13377 Periplasmic binding protein-like domain CH58_3322 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain CH58_3322 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain CH58_3323 PF00384 Molybdopterin oxidoreductase CH58_3323 PF01568 Molydopterin dinucleotide binding domain CH58_3324 PF00501 AMP-binding enzyme CH58_3324 PF01553 Acyltransferase CH58_3324 PF13193 AMP-binding enzyme C-terminal domain CH58_3325 PF07690 Major Facilitator Superfamily CH58_3328 PF00248 Aldo/keto reductase family CH58_3329 PF02976 DNA mismatch repair enzyme MutH CH58_333 PF00391 PEP-utilising enzyme, mobile domain CH58_333 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain CH58_333 PF02896 PEP-utilising enzyme, TIM barrel domain CH58_3330 PF00293 NUDIX domain CH58_3331 PF00391 PEP-utilising enzyme, mobile domain CH58_3331 PF01590 GAF domain CH58_3331 PF02896 PEP-utilising enzyme, TIM barrel domain CH58_3331 PF05524 PEP-utilising enzyme, N-terminal CH58_3332 PF01790 CH58_3332 CH58_3333 PF00303 Thymidylate synthase CH58_3335 PF07963 Prokaryotic N-terminal methylation motif CH58_3337 PF10713 CH58_3337 CH58_3338 PF07963 Prokaryotic N-terminal methylation motif CH58_3338 PF12528 CH58_3338 CH58_3339 PF04257 Exodeoxyribonuclease V, gamma subunit CH58_334 PF03618 CH58_334 CH58_3340 PF00675 Insulinase (Peptidase family M16) CH58_3340 PF05193 Peptidase M16 inactive domain CH58_3340 PF16187 CH58_3340 CH58_3341 PF00580 UvrD/REP helicase N-terminal domain CH58_3341 PF13361 UvrD-like helicase C-terminal domain CH58_3342 PF13538 UvrD-like helicase C-terminal domain CH58_3342 PF13604 AAA domain CH58_3343 PF00583 Acetyltransferase (GNAT) family CH58_3343 PF00696 Amino acid kinase family CH58_3344 PF01520 N-acetylmuramoyl-L-alanine amidase CH58_3344 PF11741 AMIN domain CH58_3347 PF03562 MltA specific insert domain CH58_3347 PF06725 3D domain CH58_3348 PF00899 ThiF family CH58_3349 PF02657 Fe-S metabolism associated domain CH58_335 PF00793 DAHP synthetase I family CH58_3350 PF00266 Aminotransferase class-V CH58_3351 PF06004 Bacterial protein of unknown function (DUF903) CH58_3352 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH58_3352 PF03466 LysR substrate binding domain CH58_3353 PF04241 CH58_3353 CH58_3354 PF01728 FtsJ-like methyltransferase CH58_3355 PF00665 Integrase core domain CH58_3355 PF02796 Helix-turn-helix domain of resolvase CH58_3357 PF01695 IstB-like ATP binding protein CH58_3358 PF01367 5'-3' exonuclease, C-terminal SAM fold CH58_3358 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain CH58_3359 PF03641 Possible lysine decarboxylase CH58_3359 PF11892 Domain of unknown function (DUF3412) CH58_3359 PF14793 Domain of unknown function (DUF4478) CH58_336 PF02696 CH58_336 CH58_3360 PF14489 QueF-like protein CH58_3360 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term CH58_3361 PF07348 Syd protein (SUKH-2) CH58_3362 PF01797 Transposase IS200 like CH58_3363 PF04287 tRNA pseudouridine synthase C CH58_3364 PF00849 RNA pseudouridylate synthase CH58_3365 PF00258 Flavodoxin CH58_3366 PF11944 CH58_3366 CH58_3367 PF00132 Bacterial transferase hexapeptide (six repeats) CH58_3367 PF14602 Hexapeptide repeat of succinyl-transferase CH58_3367 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal CH58_3368 PF01842 ACT domain CH58_3368 PF01909 Nucleotidyltransferase domain CH58_3368 PF01966 HD domain CH58_3368 PF08335 GlnD PII-uridylyltransferase CH58_3369 PF00557 Metallopeptidase family M24 CH58_337 PF02696 CH58_337 CH58_3370 PF00318 Ribosomal protein S2 CH58_3371 PF00889 Elongation factor TS CH58_3373 PF01797 Transposase IS200 like CH58_3374 PF00696 Amino acid kinase family CH58_3375 PF01765 Ribosome recycling factor CH58_3376 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase CH58_3376 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal CH58_3376 PF13288 DXP reductoisomerase C-terminal domain CH58_3377 PF01255 Putative undecaprenyl diphosphate synthase CH58_3378 PF01148 Cytidylyltransferase family CH58_3379 PF00595 PDZ domain (Also known as DHR or GLGF) CH58_3379 PF02163 Peptidase family M50 CH58_338 PF03099 Biotin/lipoate A/B protein ligase family CH58_338 PF10437 Bacterial lipoate protein ligase C-terminus CH58_3380 PF01103 Surface antigen CH58_3380 PF07244 Surface antigen variable number repeat CH58_3381 PF03938 Outer membrane protein (OmpH-like) CH58_3382 PF00132 Bacterial transferase hexapeptide (six repeats) CH58_3382 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD CH58_3383 PF07977 FabA-like domain CH58_3384 PF00132 Bacterial transferase hexapeptide (six repeats) CH58_3384 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 CH58_3385 PF02684 CH58_3385 CH58_3386 PF01351 Ribonuclease HII CH58_3387 PF01336 OB-fold nucleic acid binding domain CH58_3387 PF02811 PHP domain CH58_3387 PF07733 Bacterial DNA polymerase III alpha subunit CH58_3387 PF14579 Helix-hairpin-helix motif CH58_3388 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit CH58_3389 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CH58_339 PF00877 NlpC/P60 family CH58_3390 PF01171 PP-loop family CH58_3390 PF09179 TilS substrate binding domain CH58_3390 PF11734 TilS substrate C-terminal domain CH58_3391 PF00034 Cytochrome c CH58_3392 PF07073 Modulator of Rho-dependent transcription termination (ROF) CH58_3393 PF06786 CH58_3393 CH58_3394 PF07152 YaeQ protein CH58_3395 PF00472 RF-1 domain CH58_3396 PF04170 NlpE N-terminal domain CH58_3396 PF17185 CH58_3396 CH58_3397 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CH58_3397 PF03129 Anticodon binding domain CH58_3397 PF04073 Aminoacyl-tRNA editing domain CH58_3398 PF01980 Uncharacterised protein family UPF0066 CH58_3399 PF16358 CH58_3399 CH58_34 PF03692 CH58_34 CH58_3400 PF03180 NLPA lipoprotein CH58_3401 PF00528 Binding-protein-dependent transport system inner membrane component CH58_3402 PF00005 ABC transporter CH58_3402 PF09383 NIL domain CH58_3403 PF13242 HAD-hyrolase-like CH58_3409 PF00248 Aldo/keto reductase family CH58_341 PF00892 EamA-like transporter family CH58_3411 PF03372 Endonuclease/Exonuclease/phosphatase family CH58_3412 PF01464 Transglycosylase SLT domain CH58_3412 PF01476 LysM domain CH58_3413 PF00753 Metallo-beta-lactamase superfamily CH58_3413 PF16123 CH58_3413 CH58_3414 PF08241 Methyltransferase domain CH58_3415 PF00075 RNase H CH58_3416 PF00929 Exonuclease CH58_3418 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin CH58_342 PF02366 CH58_342 CH58_3421 PF01695 IstB-like ATP binding protein CH58_3423 PF00665 Integrase core domain CH58_3423 PF02796 Helix-turn-helix domain of resolvase CH58_3425 PF05973 CH58_3425 CH58_3428 PF13481 AAA domain CH58_3429 PF08273 Zinc-binding domain of primase-helicase CH58_3429 PF13362 Toprim domain CH58_343 PF01522 Polysaccharide deacetylase CH58_3430 PF10554 CH58_3430 CH58_3431 PF05930 Prophage CP4-57 regulatory protein (AlpA) CH58_3432 PF12834 CH58_3432 CH58_3432 PF12835 Integrase CH58_3434 PF14130 CH58_3434 CH58_3435 PF00589 Phage integrase family CH58_3435 PF13356 Domain of unknown function (DUF4102) CH58_3436 PF01797 Transposase IS200 like CH58_3437 PF01668 SmpB protein CH58_3438 PF03364 Polyketide cyclase / dehydrase and lipid transport CH58_3439 PF03658 RnfH family Ubiquitin CH58_344 PF00551 Formyl transferase CH58_344 PF01370 NAD dependent epimerase/dehydratase family CH58_344 PF02911 Formyl transferase, C-terminal domain CH58_3440 PF04355 SmpA / OmlA family CH58_3441 PF02463 RecF/RecN/SMC N terminal domain CH58_3442 PF01513 ATP-NAD kinase CH58_3443 PF01025 GrpE CH58_3444 PF00285 Citrate synthase CH58_3445 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit CH58_3447 PF00890 FAD binding domain CH58_3447 PF02910 Fumarate reductase flavoprotein C-term CH58_3448 PF13085 2Fe-2S iron-sulfur cluster binding domain CH58_3448 PF13534 4Fe-4S dicluster domain CH58_3449 PF00676 Dehydrogenase E1 component CH58_3449 PF02779 Transketolase, pyrimidine binding domain CH58_3449 PF16078 CH58_3449 CH58_3449 PF16870 CH58_3449 CH58_345 PF00535 Glycosyl transferase family 2 CH58_3450 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) CH58_3450 PF00364 Biotin-requiring enzyme CH58_3450 PF02817 e3 binding domain CH58_3451 PF00549 CoA-ligase CH58_3451 PF08442 ATP-grasp domain CH58_3452 PF00549 CoA-ligase CH58_3452 PF02629 CoA binding domain CH58_3453 PF01654 CH58_3453 CH58_3454 PF02322 CH58_3454 CH58_3455 PF08173 CH58_3455 CH58_3456 PF09600 CH58_3456 CH58_3457 PF03061 Thioesterase superfamily CH58_3458 PF01618 CH58_3458 CH58_3459 PF02472 Biopolymer transport protein ExbD/TolR CH58_346 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family CH58_3460 PF06519 TolA C-terminal CH58_3461 PF04052 TolB amino-terminal domain CH58_3461 PF07676 WD40-like Beta Propeller Repeat CH58_3462 PF00691 OmpA family CH58_3463 PF13174 Tetratricopeptide repeat CH58_3463 PF13432 Tetratricopeptide repeat CH58_3463 PF16331 CH58_3463 CH58_3467 PF02445 Quinolinate synthetase A protein CH58_3468 PF04973 CH58_3468 CH58_3469 PF01545 Cation efflux family CH58_347 PF00005 ABC transporter CH58_3471 PF00793 DAHP synthetase I family CH58_3472 PF01695 IstB-like ATP binding protein CH58_3473 PF00665 Integrase core domain CH58_3473 PF02796 Helix-turn-helix domain of resolvase CH58_3474 PF00768 D-alanyl-D-alanine carboxypeptidase CH58_3474 PF07943 Penicillin-binding protein 5, C-terminal domain CH58_3475 PF03222 Tryptophan/tyrosine permease family CH58_3476 PF00455 CH58_3476 CH58_3476 PF08220 DeoR-like helix-turn-helix domain CH58_3477 PF01791 DeoC/LacD family aldolase CH58_3478 PF01569 PAP2 superfamily CH58_3479 PF01569 PAP2 superfamily CH58_348 PF00255 Glutathione peroxidase CH58_3480 PF02080 TrkA-C domain CH58_3480 PF06826 CH58_3480 CH58_3481 PF00462 Glutaredoxin CH58_3482 PF07214 CH58_3482 CH58_3483 PF10722 Putative bacterial sensory transduction regulator CH58_3484 PF13416 Bacterial extracellular solute-binding protein CH58_3485 PF00005 ABC transporter CH58_3485 PF08402 TOBE domain CH58_3486 PF00528 Binding-protein-dependent transport system inner membrane component CH58_3487 PF00528 Binding-protein-dependent transport system inner membrane component CH58_3488 PF10767 CH58_3488 CH58_3489 PF05958 tRNA (Uracil-5-)-methyltransferase CH58_349 PF01032 FecCD transport family CH58_3490 PF00497 Bacterial extracellular solute-binding proteins, family 3 CH58_3492 PF01145 SPFH domain / Band 7 family CH58_3493 PF01497 Periplasmic binding protein CH58_3495 PF01032 FecCD transport family CH58_3496 PF00005 ABC transporter CH58_3497 PF03059 Nicotianamine synthase protein CH58_3498 PF10100 CH58_3498 CH58_3499 PF00892 EamA-like transporter family CH58_35 PF00589 Phage integrase family CH58_35 PF12167 CH58_35 CH58_350 PF10697 CH58_350 CH58_3500 PF00528 Binding-protein-dependent transport system inner membrane component CH58_3501 PF00528 Binding-protein-dependent transport system inner membrane component CH58_3502 PF00497 Bacterial extracellular solute-binding proteins, family 3 CH58_3503 PF00005 ABC transporter CH58_3504 PF01817 Chorismate mutase type II CH58_3505 PF12883 Protein of unknown function (DUF3828) CH58_3506 PF01370 NAD dependent epimerase/dehydratase family CH58_3507 PF11066 CH58_3507 CH58_3507 PF13460 NADH(P)-binding CH58_3508 PF01212 Beta-eliminating lyase CH58_3509 PF00205 Thiamine pyrophosphate enzyme, central domain CH58_3509 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CH58_3509 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CH58_351 PF00216 Bacterial DNA-binding protein CH58_3510 PF00111 2Fe-2S iron-sulfur cluster binding domain CH58_3510 PF00175 Oxidoreductase NAD-binding domain CH58_3510 PF00970 Oxidoreductase FAD-binding domain CH58_3511 PF03063 Prismane/CO dehydrogenase family CH58_3512 PF03956 CH58_3512 CH58_3513 PF11398 Protein of unknown function (DUF2813) CH58_3514 PF04393 CH58_3514 CH58_3515 PF16576 CH58_3515 CH58_3516 PF00005 ABC transporter CH58_3516 PF02687 CH58_3516 CH58_3516 PF12704 MacB-like periplasmic core domain CH58_3517 PF00313 'Cold-shock' DNA-binding domain CH58_3518 PF02617 ATP-dependent Clp protease adaptor protein ClpS CH58_3519 PF00004 ATPase family associated with various cellular activities (AAA) CH58_3519 PF02861 Clp amino terminal domain CH58_3519 PF07724 AAA domain (Cdc48 subfamily) CH58_3519 PF10431 C-terminal, D2-small domain, of ClpB protein CH58_352 PF01588 Putative tRNA binding domain CH58_352 PF03147 Ferredoxin-fold anticodon binding domain CH58_352 PF03483 B3/4 domain CH58_352 PF03484 tRNA synthetase B5 domain CH58_3520 PF01797 Transposase IS200 like CH58_3521 PF01176 Translation initiation factor 1A / IF-1 CH58_3522 PF03588 Leucyl/phenylalanyl-tRNA protein transferase CH58_3523 PF00005 ABC transporter CH58_3523 PF00664 ABC transporter transmembrane region CH58_3524 PF00005 ABC transporter CH58_3524 PF00664 ABC transporter transmembrane region CH58_3525 PF07992 Pyridine nucleotide-disulphide oxidoreductase CH58_3526 PF01037 AsnC family CH58_3526 PF13412 Winged helix-turn-helix DNA-binding CH58_3527 PF01580 FtsK/SpoIIIE family CH58_3527 PF09397 Ftsk gamma domain CH58_3527 PF13491 CH58_3527 CH58_3528 PF03548 Outer membrane lipoprotein carrier protein LolA CH58_353 PF01409 tRNA synthetases class II core domain (F) CH58_353 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain CH58_3530 PF00004 ATPase family associated with various cellular activities (AAA) CH58_3530 PF12002 MgsA AAA+ ATPase C terminal CH58_3530 PF16193 CH58_3530 CH58_3531 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CH58_3531 PF02403 Seryl-tRNA synthetase N-terminal domain CH58_3534 PF04055 Radical SAM superfamily CH58_3534 PF13353 4Fe-4S single cluster domain CH58_3535 PF01755 CH58_3535 CH58_3536 PF01228 Glycine radical CH58_3536 PF02901 Pyruvate formate lyase CH58_3537 PF01226 Formate/nitrite transporter CH58_3538 PF02624 YcaO-like family CH58_3539 PF00710 Asparaginase CH58_354 PF00453 Ribosomal protein L20 CH58_3540 PF03895 YadA-like C-terminal region CH58_3541 PF03895 YadA-like C-terminal region CH58_3542 PF00266 Aminotransferase class-V CH58_3543 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) CH58_3544 PF02224 Cytidylate kinase CH58_3545 PF00575 S1 RNA binding domain CH58_3547 PF00216 Bacterial DNA-binding protein CH58_3548 PF00753 Metallo-beta-lactamase superfamily CH58_3548 PF03772 CH58_3548 CH58_3548 PF13567 CH58_3548 CH58_3549 PF00005 ABC transporter CH58_3549 PF00664 ABC transporter transmembrane region CH58_355 PF01632 Ribosomal protein L35 CH58_3550 PF02606 Tetraacyldisaccharide-1-P 4'-kinase CH58_3551 PF07063 Domain of unknown function (DUF1338) CH58_3552 PF01695 IstB-like ATP binding protein CH58_3553 PF00665 Integrase core domain CH58_3553 PF02796 Helix-turn-helix domain of resolvase CH58_3554 PF07063 Domain of unknown function (DUF1338) CH58_3555 PF00313 'Cold-shock' DNA-binding domain CH58_3556 PF03966 Trm112p-like protein CH58_3557 PF02348 Cytidylyltransferase CH58_3558 PF03881 Fructosamine kinase CH58_3559 PF13847 Methyltransferase domain CH58_356 PF00707 Translation initiation factor IF-3, C-terminal domain CH58_3560 PF03882 KicB killing factor CH58_3560 PF17192 CH58_3560 CH58_3560 PF17193 CH58_3560 CH58_3561 PF04288 MukE-like family CH58_3562 PF04310 MukB N-terminal CH58_3562 PF13558 Putative exonuclease SbcCD, C subunit CH58_3562 PF16330 CH58_3562 CH58_3563 PF01797 Transposase IS200 like CH58_3564 PF01471 Putative peptidoglycan binding domain CH58_3564 PF03734 L,D-transpeptidase catalytic domain CH58_3565 PF05951 CH58_3565 CH58_3566 PF00753 Metallo-beta-lactamase superfamily CH58_3567 PF00155 Aminotransferase class I and II CH58_3568 PF00267 Gram-negative porin CH58_3569 PF00152 tRNA synthetases class II (D, K and N) CH58_3569 PF01336 OB-fold nucleic acid binding domain CH58_357 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CH58_357 PF02824 TGS domain CH58_357 PF03129 Anticodon binding domain CH58_357 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain CH58_3570 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family CH58_3571 PF01433 Peptidase family M1 CH58_3571 PF11940 Domain of unknown function (DUF3458) CH58_3571 PF17432 CH58_3571 CH58_3572 PF01180 Dihydroorotate dehydrogenase CH58_3573 PF07126 CH58_3573 CH58_3574 PF00111 2Fe-2S iron-sulfur cluster binding domain CH58_3574 PF03473 MOSC domain CH58_3574 PF03476 MOSC N-terminal beta barrel domain CH58_3575 PF01170 Putative RNA methylase family UPF0020 CH58_3575 PF02926 THUMP domain CH58_3575 PF10672 S-adenosylmethionine-dependent methyltransferase CH58_3576 PF00005 ABC transporter CH58_3576 PF12848 ABC transporter CH58_3576 PF16326 CH58_3576 CH58_3577 PF04403 CH58_3577 CH58_3578 PF02470 CH58_3578 CH58_3579 PF03886 Protein of unknown function (DUF330) CH58_358 PF13619 CH58_358 CH58_3580 PF01797 Transposase IS200 like CH58_3581 PF00109 Beta-ketoacyl synthase, N-terminal domain CH58_3581 PF02801 Beta-ketoacyl synthase, C-terminal domain CH58_3582 PF01695 IstB-like ATP binding protein CH58_3584 PF00665 Integrase core domain CH58_3584 PF02796 Helix-turn-helix domain of resolvase CH58_3585 PF00109 Beta-ketoacyl synthase, N-terminal domain CH58_3587 PF07977 FabA-like domain CH58_3588 PF05362 Lon protease (S16) C-terminal proteolytic domain CH58_3588 PF13654 AAA domain CH58_3589 PF06303 Organiser of macrodomain of Terminus of chromosome CH58_3589 PF17414 CH58_3589 CH58_3590 PF01797 Transposase IS200 like CH58_3591 PF00691 OmpA family CH58_3591 PF01389 OmpA-like transmembrane domain CH58_3592 PF03846 Cell division inhibitor SulA CH58_3593 PF04993 TfoX N-terminal domain CH58_3593 PF04994 TfoX C-terminal domain CH58_3594 PF12805 CH58_3594 CH58_3594 PF13515 CH58_3594 CH58_3595 PF03733 CH58_3595 CH58_3596 PF00580 UvrD/REP helicase N-terminal domain CH58_3596 PF12462 CH58_3596 CH58_3596 PF13361 UvrD-like helicase C-terminal domain CH58_3597 PF02142 MGS-like domain CH58_3598 PF09829 CH58_3598 CH58_3599 PF13380 CoA binding domain CH58_36 PF00665 Integrase core domain CH58_36 PF02796 Helix-turn-helix domain of resolvase CH58_360 PF01914 CH58_360 CH58_3600 PF08755 Hemimethylated DNA-binding protein YccV like CH58_3601 PF10672 S-adenosylmethionine-dependent methyltransferase CH58_3602 PF00708 Acylphosphatase CH58_3603 PF04358 DsrC like protein CH58_3605 PF13610 CH58_3605 CH58_3609 PF01565 FAD binding domain CH58_3609 PF13480 Acetyltransferase (GNAT) domain CH58_361 PF01464 Transglycosylase SLT domain CH58_3610 PF13561 Enoyl-(Acyl carrier protein) reductase CH58_3612 PF07977 FabA-like domain CH58_3613 PF00109 Beta-ketoacyl synthase, N-terminal domain CH58_3613 PF02801 Beta-ketoacyl synthase, C-terminal domain CH58_3614 PF13561 Enoyl-(Acyl carrier protein) reductase CH58_3615 PF01154 Hydroxymethylglutaryl-coenzyme A synthase N terminal CH58_3615 PF08540 Hydroxymethylglutaryl-coenzyme A synthase C terminal CH58_3616 PF00378 Enoyl-CoA hydratase/isomerase family CH58_3617 PF00378 Enoyl-CoA hydratase/isomerase family CH58_3618 PF13561 Enoyl-(Acyl carrier protein) reductase CH58_3619 PF13924 CH58_3619 CH58_362 PF01297 Periplasmic solute binding protein family CH58_3620 PF00550 Phosphopantetheine attachment site CH58_3621 PF00698 Acyl transferase domain CH58_3623 PF00665 Integrase core domain CH58_3623 PF02796 Helix-turn-helix domain of resolvase CH58_3625 PF01695 IstB-like ATP binding protein CH58_3626 PF05591 CH58_3626 CH58_3627 PF05943 CH58_3627 CH58_3628 PF05936 CH58_3628 CH58_363 PF00005 ABC transporter CH58_3631 PF00691 OmpA family CH58_3632 PF05638 Protein of unknown function (DUF796) CH58_3633 PF00004 ATPase family associated with various cellular activities (AAA) CH58_3633 PF07724 AAA domain (Cdc48 subfamily) CH58_3633 PF10431 C-terminal, D2-small domain, of ClpB protein CH58_3634 PF05954 Phage late control gene D protein (GPD) CH58_3634 PF10106 CH58_3634 CH58_3634 PF13296 CH58_3634 CH58_3635 PF01551 Peptidase family M23 CH58_3637 PF10106 CH58_3637 CH58_3639 PF01551 Peptidase family M23 CH58_364 PF00950 CH58_364 CH58_3642 PF06744 CH58_3642 CH58_3642 PF06761 CH58_3642 CH58_3645 PF05488 PAAR motif CH58_3645 PF15607 CH58_3645 CH58_3647 PF05947 CH58_3647 CH58_3648 PF06996 CH58_3648 CH58_3649 PF12790 Type VI secretion lipoprotein CH58_365 PF00950 CH58_365 CH58_3650 PF04965 Gene 25-like lysozyme CH58_3651 PF06812 CH58_3651 CH58_3651 PF12486 CH58_3651 CH58_3652 PF16809 CH58_3652 CH58_3653 PF00005 ABC transporter CH58_3653 PF12848 ABC transporter CH58_3654 PF16809 CH58_3654 CH58_3655 PF00872 CH58_3655 CH58_3656 PF00899 ThiF family CH58_3657 PF00994 Probable molybdopterin binding domain CH58_3657 PF03453 MoeA N-terminal region (domain I and II) CH58_3657 PF03454 MoeA C-terminal region (domain IV) CH58_3658 PF04055 Radical SAM superfamily CH58_3659 PF00005 ABC transporter CH58_366 PF03881 Fructosamine kinase CH58_3660 PF13437 HlyD family secretion protein CH58_3663 PF00756 Putative esterase CH58_3664 PF00107 Zinc-binding dehydrogenase CH58_3664 PF08240 Alcohol dehydrogenase GroES-like domain CH58_3665 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH58_3665 PF03466 LysR substrate binding domain CH58_3666 PF06779 CH58_3666 CH58_3667 PF01227 GTP cyclohydrolase I CH58_3668 PF04235 CH58_3668 CH58_3669 PF13407 Periplasmic binding protein domain CH58_367 PF14002 CH58_367 CH58_3670 PF00005 ABC transporter CH58_3671 PF02653 CH58_3671 CH58_3672 PF02698 DUF218 domain CH58_3673 PF00390 Malic enzyme, N-terminal domain CH58_3673 PF03949 Malic enzyme, NAD binding domain CH58_3674 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region CH58_3674 PF08211 Cytidine and deoxycytidylate deaminase zinc-binding region CH58_3675 PF04172 CH58_3675 CH58_3676 PF03788 CH58_3676 CH58_3677 PF07690 Major Facilitator Superfamily CH58_3678 PF08309 CH58_3678 CH58_3679 PF13407 Periplasmic binding protein domain CH58_368 PF13419 Haloacid dehalogenase-like hydrolase CH58_3681 PF01797 Transposase IS200 like CH58_3682 PF01588 Putative tRNA binding domain CH58_3682 PF09334 tRNA synthetases class I (M) CH58_3683 PF10609 ParA/MinD ATPase like CH58_3684 PF00485 Phosphoribulokinase / Uridine kinase family CH58_3685 PF00692 dUTPase CH58_3686 PF05170 CH58_3686 CH58_3686 PF13502 CH58_3686 CH58_3687 PF00571 CBS domain CH58_3687 PF03471 Transporter associated domain CH58_3687 PF03741 CH58_3687 CH58_3688 PF06276 Ferric iron reductase FhuF-like transporter CH58_3688 PF11575 CH58_3688 CH58_3689 PF00282 Pyridoxal-dependent decarboxylase conserved domain CH58_369 PF00872 CH58_369 CH58_3690 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) CH58_3691 PF13523 Acetyltransferase (GNAT) domain CH58_3692 PF04183 IucA / IucC family CH58_3692 PF06276 Ferric iron reductase FhuF-like transporter CH58_3693 PF00005 ABC transporter CH58_3694 PF01032 FecCD transport family CH58_3695 PF01032 FecCD transport family CH58_3696 PF01497 Periplasmic binding protein CH58_3697 PF00593 TonB dependent receptor CH58_3697 PF07715 TonB-dependent Receptor Plug Domain CH58_3698 PF04183 IucA / IucC family CH58_3698 PF06276 Ferric iron reductase FhuF-like transporter CH58_3699 PF04183 IucA / IucC family CH58_37 PF00665 Integrase core domain CH58_370 PF00872 CH58_370 CH58_3700 PF00483 Nucleotidyl transferase CH58_3701 PF00483 Nucleotidyl transferase CH58_3702 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain CH58_3702 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase CH58_3703 PF01502 Phosphoribosyl-AMP cyclohydrolase CH58_3703 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase CH58_3704 PF00977 Histidine biosynthesis protein CH58_3705 PF00977 Histidine biosynthesis protein CH58_3706 PF00117 Glutamine amidotransferase class-I CH58_3707 PF00475 Imidazoleglycerol-phosphate dehydratase CH58_3707 PF13242 HAD-hyrolase-like CH58_3708 PF00155 Aminotransferase class I and II CH58_3709 PF00815 Histidinol dehydrogenase CH58_371 PF07883 Cupin domain CH58_3710 PF01634 ATP phosphoribosyltransferase CH58_3710 PF08029 HisG, C-terminal domain CH58_3711 PF01370 NAD dependent epimerase/dehydratase family CH58_3712 PF16695 CH58_3712 CH58_3713 PF02653 CH58_3713 CH58_3714 PF00005 ABC transporter CH58_3715 PF00005 ABC transporter CH58_3716 PF00465 Iron-containing alcohol dehydrogenase CH58_3718 PF13520 Amino acid permease CH58_3719 PF00929 Exonuclease CH58_3719 PF08411 Exonuclease C-terminal CH58_372 PF04962 KduI/IolB family CH58_3720 PF07993 Male sterility protein CH58_3721 PF04363 CH58_3721 CH58_3722 PF02369 Bacterial Ig-like domain (group 1) CH58_3722 PF09134 Invasin, domain 3 CH58_3722 PF11924 Protein of unknown function (DUF3442) CH58_3723 PF00872 CH58_3723 CH58_3724 PF07690 Major Facilitator Superfamily CH58_3725 PF04134 CH58_3725 CH58_3726 PF13561 Enoyl-(Acyl carrier protein) reductase CH58_3727 PF01557 Fumarylacetoacetate (FAA) hydrolase family CH58_3728 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain CH58_3728 PF13378 Enolase C-terminal domain-like CH58_373 PF13561 Enoyl-(Acyl carrier protein) reductase CH58_3730 PF01070 FMN-dependent dehydrogenase CH58_3731 PF00764 Arginosuccinate synthase CH58_3732 PF01554 MatE CH58_3733 PF07690 Major Facilitator Superfamily CH58_3734 PF01522 Polysaccharide deacetylase CH58_3736 PF09831 CH58_3736 CH58_3738 PF00072 Response regulator receiver domain CH58_3738 PF00196 Bacterial regulatory proteins, luxR family CH58_3739 PF06808 CH58_3739 CH58_374 PF06917 Periplasmic pectate lyase CH58_3740 PF04290 CH58_3740 CH58_3741 PF03480 Bacterial extracellular solute-binding protein, family 7 CH58_3742 PF01648 4'-phosphopantetheinyl transferase superfamily CH58_3744 PF02065 Melibiase CH58_3744 PF16875 CH58_3744 CH58_3745 PF01306 LacY proton/sugar symporter CH58_3746 PF00872 CH58_3746 CH58_3747 PF00872 CH58_3747 CH58_3748 PF00872 CH58_3748 CH58_3749 PF00270 DEAD/DEAH box helicase CH58_3749 PF00271 Helicase conserved C-terminal domain CH58_375 PF01695 IstB-like ATP binding protein CH58_3750 PF01797 Transposase IS200 like CH58_3752 PF01207 Dihydrouridine synthase (Dus) CH58_3754 PF00768 D-alanyl-D-alanine carboxypeptidase CH58_3755 PF01565 FAD binding domain CH58_3755 PF09330 D-lactate dehydrogenase, membrane binding CH58_3756 PF01928 CYTH domain CH58_3757 PF01844 HNH endonuclease CH58_3758 PF05076 Suppressor of fused protein (SUFU) CH58_3759 PF04226 CH58_3759 CH58_376 PF00665 Integrase core domain CH58_3760 PF00005 ABC transporter CH58_3761 PF12974 ABC transporter, phosphonate, periplasmic substrate-binding protein CH58_3762 PF00528 Binding-protein-dependent transport system inner membrane component CH58_3763 PF00528 Binding-protein-dependent transport system inner membrane component CH58_3764 PF07308 CH58_3764 CH58_3765 PF13433 Periplasmic binding protein domain CH58_3766 PF02653 CH58_3766 CH58_3766 PF13646 HEAT repeats CH58_3767 PF02653 CH58_3767 CH58_3768 PF00005 ABC transporter CH58_3768 PF12399 Branched-chain amino acid ATP-binding cassette transporter CH58_3769 PF00005 ABC transporter CH58_377 PF02796 Helix-turn-helix domain of resolvase CH58_3770 PF13640 2OG-Fe(II) oxygenase superfamily CH58_3771 PF00282 Pyridoxal-dependent decarboxylase conserved domain CH58_3772 PF00581 Rhodanese-like domain CH58_3775 PF00528 Binding-protein-dependent transport system inner membrane component CH58_3776 PF00005 ABC transporter CH58_3777 PF00528 Binding-protein-dependent transport system inner membrane component CH58_3778 PF13520 Amino acid permease CH58_3779 PF01276 Orn/Lys/Arg decarboxylase, major domain CH58_3779 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain CH58_3779 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain CH58_378 PF06917 Periplasmic pectate lyase CH58_3781 PF00892 EamA-like transporter family CH58_3782 PF02796 Helix-turn-helix domain of resolvase CH58_3783 PF00665 Integrase core domain CH58_3784 PF01695 IstB-like ATP binding protein CH58_3786 PF00267 Gram-negative porin CH58_3787 PF06733 DEAD_2 CH58_3787 PF13307 Helicase C-terminal domain CH58_3788 PF00199 Catalase CH58_3788 PF06628 Catalase-related immune-responsive CH58_3789 PF07437 CH58_3789 CH58_379 PF00528 Binding-protein-dependent transport system inner membrane component CH58_3790 PF03222 Tryptophan/tyrosine permease family CH58_3791 PF00994 Probable molybdopterin binding domain CH58_3792 PF03974 Ecotin CH58_3793 PF00111 2Fe-2S iron-sulfur cluster binding domain CH58_3794 PF00268 Ribonucleotide reductase, small chain CH58_3795 PF00317 Ribonucleotide reductase, all-alpha domain CH58_3795 PF02867 Ribonucleotide reductase, barrel domain CH58_3795 PF03477 ATP cone domain CH58_3796 PF13489 Methyltransferase domain CH58_3797 PF00521 DNA gyrase/topoisomerase IV, subunit A CH58_3797 PF03989 DNA gyrase C-terminal domain, beta-propeller CH58_3798 PF00072 Response regulator receiver domain CH58_3798 PF00512 His Kinase A (phospho-acceptor) domain CH58_3798 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH58_3798 PF09456 RcsC Alpha-Beta-Loop (ABL) CH58_3799 PF00072 Response regulator receiver domain CH58_3799 PF00196 Bacterial regulatory proteins, luxR family CH58_38 PF01695 IstB-like ATP binding protein CH58_380 PF00528 Binding-protein-dependent transport system inner membrane component CH58_3800 PF01627 Hpt domain CH58_3800 PF16359 CH58_3800 CH58_3801 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH58_3802 PF07690 Major Facilitator Superfamily CH58_3804 PF00267 Gram-negative porin CH58_3807 PF00144 Beta-lactamase CH58_3808 PF13347 MFS/sugar transport protein CH58_3809 PF12706 Beta-lactamase superfamily domain CH58_381 PF00005 ABC transporter CH58_3810 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CH58_3810 PF00672 HAMP domain CH58_3810 PF02743 Cache domain CH58_3811 PF01278 Omptin family CH58_3812 PF06183 DinI-like family CH58_3813 PF00717 Peptidase S24-like CH58_3813 PF01381 Helix-turn-helix CH58_3814 PF06530 CH58_3814 CH58_3815 PF07005 Protein of unknown function, DUF1537 CH58_3815 PF17042 CH58_3815 CH58_3816 PF00596 Class II Aldolase and Adducin N-terminal domain CH58_3817 PF00455 CH58_3817 CH58_3817 PF08220 DeoR-like helix-turn-helix domain CH58_3818 PF01261 Xylose isomerase-like TIM barrel CH58_382 PF01547 Bacterial extracellular solute-binding protein CH58_3821 PF10948 CH58_3821 CH58_3822 PF04984 Phage tail sheath protein CH58_3822 PF17482 CH58_3822 CH58_3823 PF10618 CH58_3823 CH58_3824 PF10109 CH58_3824 CH58_3827 PF07157 CH58_3827 CH58_3828 PF05954 Phage late control gene D protein (GPD) CH58_3829 PF06890 Bacteriophage Mu Gp45 protein CH58_383 PF06178 Oligogalacturonate-specific porin protein (KdgM) CH58_3830 PF07409 CH58_3830 CH58_3831 PF04865 CH58_3831 CH58_3832 PF10076 CH58_3832 CH58_3833 PF10076 CH58_3833 CH58_3834 PF07484 Phage Tail Collar Domain CH58_3835 PF01380 SIS domain CH58_3835 PF01418 Helix-turn-helix domain, rpiR family CH58_3837 PF00232 Glycosyl hydrolase family 1 CH58_384 PF04307 CH58_384 CH58_3841 PF12639 DNase/tRNase domain of colicin-like bacteriocin CH58_3842 PF00665 Integrase core domain CH58_3842 PF02796 Helix-turn-helix domain of resolvase CH58_3844 PF01695 IstB-like ATP binding protein CH58_3848 PF00884 Sulfatase CH58_3848 PF11893 CH58_3848 CH58_3849 PF07208 Protein of unknown function (DUF1414) CH58_385 PF00375 Sodium:dicarboxylate symporter family CH58_3850 PF04245 CH58_3850 CH58_3851 PF01797 Transposase IS200 like CH58_3852 PF01386 Ribosomal L25p family CH58_3853 PF00271 Helicase conserved C-terminal domain CH58_3853 PF04851 Type III restriction enzyme, res subunit CH58_3854 PF00849 RNA pseudouridylate synthase CH58_3854 PF01479 S4 domain CH58_3855 PF07690 Major Facilitator Superfamily CH58_3856 PF13989 CH58_3856 CH58_3857 PF00005 ABC transporter CH58_3857 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CH58_3858 PF00528 Binding-protein-dependent transport system inner membrane component CH58_3858 PF12911 CH58_3858 CH58_3859 PF00528 Binding-protein-dependent transport system inner membrane component CH58_386 PF01471 Putative peptidoglycan binding domain CH58_386 PF01510 N-acetylmuramoyl-L-alanine amidase CH58_3860 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CH58_3861 PF00563 EAL domain CH58_3861 PF12792 CH58_3861 CH58_3863 PF00877 NlpC/P60 family CH58_3864 PF01569 PAP2 superfamily CH58_3865 PF02492 CobW/HypB/UreG, nucleotide-binding domain CH58_3865 PF07683 Cobalamin synthesis protein cobW C-terminal domain CH58_3867 PF00392 Bacterial regulatory proteins, gntR family CH58_3867 PF07729 FCD domain CH58_3868 PF01232 Mannitol dehydrogenase Rossmann domain CH58_3868 PF08125 Mannitol dehydrogenase C-terminal domain CH58_3869 PF03786 D-mannonate dehydratase (UxuA) CH58_387 PF01614 Bacterial transcriptional regulator CH58_387 PF09339 IclR helix-turn-helix domain CH58_3870 PF01132 Elongation factor P (EF-P) OB domain CH58_3870 PF08207 Elongation factor P (EF-P) KOW-like domain CH58_3870 PF09285 Elongation factor P, C-terminal CH58_3871 PF03222 Tryptophan/tyrosine permease family CH58_3872 PF03692 CH58_3872 CH58_3873 PF13561 Enoyl-(Acyl carrier protein) reductase CH58_3874 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CH58_3874 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CH58_3875 PF01557 Fumarylacetoacetate (FAA) hydrolase family CH58_3876 PF00665 Integrase core domain CH58_3876 PF13276 CH58_3876 CH58_3877 PF13518 Helix-turn-helix domain CH58_3878 PF00171 Aldehyde dehydrogenase family CH58_3879 PF00370 FGGY family of carbohydrate kinases, N-terminal domain CH58_3879 PF02782 FGGY family of carbohydrate kinases, C-terminal domain CH58_388 PF14583 Oligogalacturonate lyase CH58_3880 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) CH58_3881 PF13407 Periplasmic binding protein domain CH58_3882 PF00005 ABC transporter CH58_3883 PF02653 CH58_3883 CH58_3884 PF00293 NUDIX domain CH58_3885 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 CH58_3885 PF00381 PTS HPr component phosphorylation site CH58_3886 PF00294 pfkB family carbohydrate kinase CH58_3887 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit CH58_3887 PF02378 Phosphotransferase system, EIIC CH58_3888 PF00486 Transcriptional regulatory protein, C terminal CH58_3889 PF17550 CH58_3889 CH58_389 PF07690 Major Facilitator Superfamily CH58_3891 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain CH58_3891 PF02753 Pili assembly chaperone PapD, C-terminal domain CH58_3892 PF00577 Outer membrane usher protein CH58_3892 PF13953 PapC C-terminal domain CH58_3892 PF13954 PapC N-terminal domain CH58_3893 PF01261 Xylose isomerase-like TIM barrel CH58_3894 PF03601 CH58_3894 CH58_3895 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH58_3895 PF03466 LysR substrate binding domain CH58_3897 PF00324 Amino acid permease CH58_3898 PF01497 Periplasmic binding protein CH58_3899 PF01032 FecCD transport family CH58_390 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain CH58_390 PF02753 Pili assembly chaperone PapD, C-terminal domain CH58_3900 PF00005 ABC transporter CH58_3901 PF00593 TonB dependent receptor CH58_3901 PF07715 TonB-dependent Receptor Plug Domain CH58_3902 PF00043 Glutathione S-transferase, C-terminal domain CH58_3902 PF13417 Glutathione S-transferase, N-terminal domain CH58_3903 PF12710 haloacid dehalogenase-like hydrolase CH58_3905 PF03171 2OG-Fe(II) oxygenase superfamily CH58_3905 PF14226 non-haem dioxygenase in morphine synthesis N-terminal CH58_3906 PF03180 NLPA lipoprotein CH58_3907 PF00005 ABC transporter CH58_3907 PF09383 NIL domain CH58_3908 PF00528 Binding-protein-dependent transport system inner membrane component CH58_3909 PF00768 D-alanyl-D-alanine carboxypeptidase CH58_3910 PF01695 IstB-like ATP binding protein CH58_3912 PF00665 Integrase core domain CH58_3912 PF02796 Helix-turn-helix domain of resolvase CH58_3913 PF00300 Histidine phosphatase superfamily (branch 1) CH58_3914 PF07769 CH58_3914 CH58_3915 PF01263 Aldose 1-epimerase CH58_3917 PF00288 GHMP kinases N terminal domain CH58_3917 PF08544 GHMP kinases C terminal CH58_3917 PF10509 Galactokinase galactose-binding signature CH58_3918 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain CH58_3918 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain CH58_3919 PF16363 CH58_3919 CH58_3920 PF02517 CAAX protease self-immunity CH58_3922 PF00005 ABC transporter CH58_3923 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH58_3923 PF03459 TOBE domain CH58_3924 PF10766 Protein of unknown function (DUF2592) CH58_3925 PF13531 Bacterial extracellular solute-binding protein CH58_3926 PF00528 Binding-protein-dependent transport system inner membrane component CH58_3927 PF00005 ABC transporter CH58_3927 PF03459 TOBE domain CH58_3928 PF08282 haloacid dehalogenase-like hydrolase CH58_3929 PF10282 Lactonase, 7-bladed beta-propeller CH58_393 PF00577 Outer membrane usher protein CH58_393 PF13953 PapC C-terminal domain CH58_393 PF13954 PapC N-terminal domain CH58_3930 PF00202 Aminotransferase class-III CH58_3931 PF04055 Radical SAM superfamily CH58_3931 PF06968 Biotin and Thiamin Synthesis associated domain CH58_3932 PF00155 Aminotransferase class I and II CH58_3933 PF08241 Methyltransferase domain CH58_3934 PF13500 AAA domain CH58_3935 PF00005 ABC transporter CH58_3936 PF00271 Helicase conserved C-terminal domain CH58_3936 PF02151 UvrB/uvrC motif CH58_3936 PF04851 Type III restriction enzyme, res subunit CH58_3936 PF12344 Ultra-violet resistance protein B CH58_3937 PF09905 Uncharacterized conserved protein (DUF2132) CH58_3938 PF01933 Uncharacterised protein family UPF0052 CH58_394 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain CH58_394 PF02753 Pili assembly chaperone PapD, C-terminal domain CH58_3940 PF04055 Radical SAM superfamily CH58_3940 PF06463 Molybdenum Cofactor Synthesis C CH58_3940 PF13353 4Fe-4S single cluster domain CH58_3941 PF01967 MoaC family CH58_3942 PF02597 ThiS family CH58_3943 PF02391 MoaE protein CH58_3944 PF01027 Inhibitor of apoptosis-promoting Bax1 CH58_3945 PF01797 Transposase IS200 like CH58_3946 PF00732 GMC oxidoreductase CH58_3946 PF05199 GMC oxidoreductase CH58_3947 PF00171 Aldehyde dehydrogenase family CH58_3948 PF00440 Bacterial regulatory proteins, tetR family CH58_3948 PF13977 Bacterial transcriptional repressor CH58_3949 PF02028 BCCT family transporter CH58_395 PF16970 CH58_395 CH58_3950 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH58_3950 PF03466 LysR substrate binding domain CH58_3951 PF00892 EamA-like transporter family CH58_3952 PF01048 Phosphorylase superfamily CH58_3953 PF03825 CH58_3953 CH58_3954 PF01797 Transposase IS200 like CH58_3955 PF03825 CH58_3955 CH58_3956 PF13801 Heavy-metal resistance CH58_3957 PF00512 His Kinase A (phospho-acceptor) domain CH58_3957 PF00989 PAS fold CH58_3957 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH58_3957 PF17203 CH58_3957 CH58_3958 PF00072 Response regulator receiver domain CH58_3958 PF00158 Sigma-54 interaction domain CH58_3958 PF02954 Bacterial regulatory protein, Fis family CH58_3959 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH58_3959 PF03466 LysR substrate binding domain CH58_396 PF01435 Peptidase family M48 CH58_3960 PF00724 NADH:flavin oxidoreductase / NADH oxidase family CH58_3961 PF07110 EthD domain CH58_3962 PF12698 ABC-2 family transporter protein CH58_3963 PF12698 ABC-2 family transporter protein CH58_3964 PF00005 ABC transporter CH58_3965 PF16576 CH58_3965 CH58_3966 PF00440 Bacterial regulatory proteins, tetR family CH58_3966 PF09209 Domain of unknown function (DUF1956) CH58_3967 PF00270 DEAD/DEAH box helicase CH58_3967 PF00271 Helicase conserved C-terminal domain CH58_3969 PF13358 DDE superfamily endonuclease CH58_3974 PF00872 CH58_3974 CH58_3975 PF00356 Bacterial regulatory proteins, lacI family CH58_3975 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family CH58_3976 PF00665 Integrase core domain CH58_3976 PF02796 Helix-turn-helix domain of resolvase CH58_3978 PF01695 IstB-like ATP binding protein CH58_398 PF00595 PDZ domain (Also known as DHR or GLGF) CH58_398 PF03572 Peptidase family S41 CH58_398 PF11818 CH58_398 CH58_3981 PF06167 Glucose-regulated metallo-peptidase M90 CH58_3982 PF03795 YCII-related domain CH58_3983 PF01163 RIO1 family CH58_3984 PF00005 ABC transporter CH58_3984 PF00664 ABC transporter transmembrane region CH58_3986 PF12833 Helix-turn-helix domain CH58_3988 PF10964 CH58_3988 CH58_3989 PF13996 CH58_3989 CH58_399 PF04352 ProQ/FINO family CH58_399 PF17516 CH58_399 CH58_3990 PF13974 CH58_3990 CH58_3991 PF10765 Protein of unknown function (DUF2591) CH58_3992 PF13269 CH58_3992 CH58_3993 PF00324 Amino acid permease CH58_3994 PF07017 Antimicrobial peptide resistance and lipid A acylation protein PagP CH58_3995 PF00313 'Cold-shock' DNA-binding domain CH58_3996 PF02578 Multi-copper polyphenol oxidoreductase laccase CH58_3997 PF13847 Methyltransferase domain CH58_3999 PF00989 PAS fold CH58_3999 PF00990 GGDEF domain CH58_3999 PF13426 PAS domain CH58_4 PF00293 NUDIX domain CH58_400 PF13185 GAF domain CH58_4000 PF00593 TonB dependent receptor CH58_4000 PF07715 TonB-dependent Receptor Plug Domain CH58_4001 PF02659 CH58_4001 CH58_4002 PF06173 CH58_4002 CH58_4003 PF03613 CH58_4003 CH58_4004 PF03609 CH58_4004 CH58_4005 PF03610 PTS system fructose IIA component CH58_4005 PF03830 PTS system sorbose subfamily IIB component CH58_4006 PF00571 CBS domain CH58_4006 PF03471 Transporter associated domain CH58_4006 PF03741 CH58_4006 CH58_4007 PF01047 MarR family CH58_4008 PF01557 Fumarylacetoacetate (FAA) hydrolase family CH58_4009 PF01557 Fumarylacetoacetate (FAA) hydrolase family CH58_401 PF04403 CH58_401 CH58_4010 PF00171 Aldehyde dehydrogenase family CH58_4011 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase CH58_4012 PF02962 5-carboxymethyl-2-hydroxymuconate isomerase CH58_4014 PF03328 HpcH/HpaI aldolase/citrate lyase family CH58_4015 PF07690 Major Facilitator Superfamily CH58_4015 PF11700 CH58_4015 CH58_4016 PF03241 4-hydroxyphenylacetate 3-hydroxylase C terminal CH58_4016 PF11794 4-hydroxyphenylacetate 3-hydroxylase N terminal CH58_4018 PF01613 Flavin reductase like domain CH58_4019 PF03313 CH58_4019 CH58_4019 PF03315 Serine dehydratase beta chain CH58_402 PF02470 CH58_402 CH58_4020 PF00293 NUDIX domain CH58_4021 PF00425 chorismate binding enzyme CH58_4021 PF04715 Anthranilate synthase component I, N terminal region CH58_4022 PF03701 CH58_4022 CH58_4023 PF02222 ATP-grasp domain CH58_4024 PF00270 DEAD/DEAH box helicase CH58_4024 PF00271 Helicase conserved C-terminal domain CH58_4024 PF03880 DbpA RNA binding domain CH58_4025 PF07130 YebG protein CH58_4026 PF04266 ASCH domain CH58_4027 PF13995 YebF-like protein CH58_4028 PF00326 Prolyl oligopeptidase family CH58_4028 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain CH58_4029 PF00665 Integrase core domain CH58_4029 PF02796 Helix-turn-helix domain of resolvase CH58_403 PF05229 CH58_403 CH58_4031 PF01695 IstB-like ATP binding protein CH58_4032 PF00561 alpha/beta hydrolase fold CH58_4033 PF06440 DNA polymerase III, theta subunit CH58_4034 PF00210 Ferritin-like domain CH58_4035 PF04234 CopC domain CH58_4036 PF05425 CH58_4036 CH58_4037 PF10709 CH58_4037 CH58_4038 PF07377 Protein of unknown function (DUF1493) CH58_404 PF05229 CH58_404 CH58_4040 PF01312 FlhB HrpN YscU SpaS Family CH58_4041 PF00771 FHIPEP family CH58_4042 PF06366 CH58_4042 CH58_4043 PF11924 Protein of unknown function (DUF3442) CH58_4044 PF01797 Transposase IS200 like CH58_4045 PF02369 Bacterial Ig-like domain (group 1) CH58_4045 PF07979 Intimin C-type lectin domain CH58_4045 PF09134 Invasin, domain 3 CH58_4045 PF11924 Protein of unknown function (DUF3442) CH58_4046 PF05130 FlgN protein CH58_4047 PF04316 Anti-sigma-28 factor, FlgM CH58_4048 PF13144 SAF-like CH58_4049 PF00460 Flagella basal body rod protein CH58_405 PF05229 CH58_405 CH58_4050 PF00460 Flagella basal body rod protein CH58_4050 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CH58_4051 PF03963 CH58_4051 CH58_4051 PF13860 FlgD Ig-like domain CH58_4051 PF13861 FlgD Tudor-like domain CH58_4052 PF00460 Flagella basal body rod protein CH58_4052 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CH58_4052 PF07559 Flagellar basal body protein FlaE CH58_4053 PF00460 Flagella basal body rod protein CH58_4054 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CH58_4055 PF02107 CH58_4055 CH58_4056 PF02119 CH58_4056 CH58_4057 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase CH58_4057 PF10135 CH58_4057 CH58_4058 PF00460 Flagella basal body rod protein CH58_4058 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CH58_4059 PF00669 Bacterial flagellin N-terminal helical region CH58_406 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain CH58_4060 PF04198 Putative sugar-binding domain CH58_4061 PF00596 Class II Aldolase and Adducin N-terminal domain CH58_4061 PF13561 Enoyl-(Acyl carrier protein) reductase CH58_4062 PF02653 CH58_4062 CH58_4063 PF13407 Periplasmic binding protein domain CH58_4064 PF00005 ABC transporter CH58_4067 PF00294 pfkB family carbohydrate kinase CH58_4068 PF15919 CH58_4068 CH58_4069 PF07927 YcfA-like protein CH58_407 PF00577 Outer membrane usher protein CH58_407 PF13953 PapC C-terminal domain CH58_4070 PF01311 CH58_4070 CH58_4071 PF01313 CH58_4071 CH58_4072 PF00813 CH58_4072 CH58_4073 PF04347 CH58_4073 CH58_4074 PF01052 Surface presentation of antigens (SPOA) CH58_4074 PF16973 CH58_4074 CH58_4075 PF01052 Surface presentation of antigens (SPOA) CH58_4075 PF02154 Flagellar motor switch protein FliM CH58_4076 PF03748 CH58_4076 CH58_4077 PF02120 Flagellar hook-length control protein FliK CH58_4078 PF02050 Flagellar FliJ protein CH58_4079 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CH58_408 PF05229 CH58_408 CH58_4080 PF02108 CH58_4080 CH58_4081 PF01706 FliG C-terminal domain CH58_4081 PF14841 FliG middle domain CH58_4081 PF14842 FliG N-terminal domain CH58_4082 PF01514 Secretory protein of YscJ/FliF family CH58_4082 PF08345 CH58_4082 CH58_4083 PF02049 CH58_4083 CH58_4085 PF02661 Fic/DOC family CH58_4086 PF00730 HhH-GPD superfamily base excision DNA repair protein CH58_4087 PF13487 HD domain CH58_4089 PF12833 Helix-turn-helix domain CH58_409 PF07351 CH58_409 CH58_4090 PF05400 Flagellar protein FliT CH58_4091 PF02561 Flagellar protein FliS CH58_4092 PF02465 CH58_4092 CH58_4092 PF07195 CH58_4092 CH58_4092 PF07196 Flagellin hook IN motif CH58_4093 PF00669 Bacterial flagellin N-terminal helical region CH58_4093 PF00700 Bacterial flagellin C-terminal helical region CH58_4094 PF04539 Sigma-70 region 3 CH58_4094 PF04542 Sigma-70 region 2 CH58_4094 PF04545 Sigma-70, region 4 CH58_4095 PF02899 Phage integrase, N-terminal SAM-like domain CH58_4096 PF00291 Pyridoxal-phosphate dependent enzyme CH58_4097 PF00497 Bacterial extracellular solute-binding proteins, family 3 CH58_4098 PF00528 Binding-protein-dependent transport system inner membrane component CH58_4099 PF00005 ABC transporter CH58_41 PF02368 Bacterial Ig-like domain (group 2) CH58_410 PF04266 ASCH domain CH58_4102 PF01695 IstB-like ATP binding protein CH58_4103 PF01695 IstB-like ATP binding protein CH58_4105 PF00665 Integrase core domain CH58_4105 PF02796 Helix-turn-helix domain of resolvase CH58_4106 PF00171 Aldehyde dehydrogenase family CH58_4106 PF01619 Proline dehydrogenase CH58_4106 PF14850 DNA-binding domain of Proline dehydrogenase CH58_4108 PF00474 Sodium:solute symporter family CH58_4109 PF03239 CH58_4109 CH58_411 PF00665 Integrase core domain CH58_411 PF02796 Helix-turn-helix domain of resolvase CH58_4110 PF09375 Imelysin CH58_4110 PF13473 Cupredoxin-like domain CH58_4111 PF04261 Dyp-type peroxidase family CH58_4112 PF03358 NADPH-dependent FMN reductase CH58_4113 PF01344 Kelch motif CH58_4114 PF00324 Amino acid permease CH58_4116 PF13505 Outer membrane protein beta-barrel domain CH58_4118 PF06942 CH58_4118 CH58_4119 PF10769 CH58_4119 CH58_4120 PF00072 Response regulator receiver domain CH58_4120 PF00196 Bacterial regulatory proteins, luxR family CH58_4121 PF01541 GIY-YIG catalytic domain CH58_4121 PF02151 UvrB/uvrC motif CH58_4121 PF08459 UvrC Helix-hairpin-helix N-terminal CH58_4121 PF14520 Helix-hairpin-helix domain CH58_4122 PF01066 CDP-alcohol phosphatidyltransferase CH58_4127 PF03796 DnaB-like helicase C terminal domain CH58_413 PF01695 IstB-like ATP binding protein CH58_4131 PF05638 Protein of unknown function (DUF796) CH58_4132 PF00665 Integrase core domain CH58_4132 PF13565 CH58_4132 CH58_4133 PF01527 Transposase CH58_4136 PF10908 CH58_4136 CH58_4138 PF04965 Gene 25-like lysozyme CH58_4139 PF04717 Phage-related baseplate assembly protein CH58_4140 PF04365 Protein of unknown function (DUF497) CH58_4141 PF14384 CH58_4141 CH58_4142 PF13676 TIR domain CH58_4143 PF00872 CH58_4143 CH58_4144 PF00872 CH58_4144 CH58_4150 PF00392 Bacterial regulatory proteins, gntR family CH58_4150 PF07702 UTRA domain CH58_4151 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CH58_4152 PF01547 Bacterial extracellular solute-binding protein CH58_4153 PF00528 Binding-protein-dependent transport system inner membrane component CH58_4154 PF00528 Binding-protein-dependent transport system inner membrane component CH58_4155 PF00005 ABC transporter CH58_4156 PF08402 TOBE domain CH58_4158 PF00665 Integrase core domain CH58_4158 PF02796 Helix-turn-helix domain of resolvase CH58_416 PF01734 Patatin-like phospholipase CH58_4160 PF05321 Haemolysin expression modulating protein CH58_4161 PF01695 IstB-like ATP binding protein CH58_4162 PF01258 Prokaryotic dksA/traR C4-type zinc finger CH58_4163 PF11198 CH58_4163 CH58_4165 PF05930 Prophage CP4-57 regulatory protein (AlpA) CH58_4168 PF00593 TonB dependent receptor CH58_4168 PF07715 TonB-dependent Receptor Plug Domain CH58_4169 PF00501 AMP-binding enzyme CH58_4169 PF13193 AMP-binding enzyme C-terminal domain CH58_4170 PF00975 Thioesterase domain CH58_4171 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CH58_4172 PF00109 Beta-ketoacyl synthase, N-terminal domain CH58_4172 PF00550 Phosphopantetheine attachment site CH58_4172 PF00668 Condensation domain CH58_4172 PF00698 Acyl transferase domain CH58_4172 PF00975 Thioesterase domain CH58_4172 PF02801 Beta-ketoacyl synthase, C-terminal domain CH58_4172 PF08242 Methyltransferase domain CH58_4172 PF08659 KR domain CH58_4172 PF16197 CH58_4172 CH58_4173 PF00501 AMP-binding enzyme CH58_4173 PF00550 Phosphopantetheine attachment site CH58_4173 PF00668 Condensation domain CH58_4173 PF08242 Methyltransferase domain CH58_4174 PF12833 Helix-turn-helix domain CH58_4175 PF00005 ABC transporter CH58_4175 PF00664 ABC transporter transmembrane region CH58_4176 PF00005 ABC transporter CH58_4176 PF00664 ABC transporter transmembrane region CH58_4177 PF07690 Major Facilitator Superfamily CH58_4178 PF00425 chorismate binding enzyme CH58_4179 PF00589 Phage integrase family CH58_4179 PF13356 Domain of unknown function (DUF4102) CH58_4181 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain CH58_4181 PF02753 Pili assembly chaperone PapD, C-terminal domain CH58_4182 PF00419 Fimbrial protein CH58_4183 PF00577 Outer membrane usher protein CH58_4183 PF13953 PapC C-terminal domain CH58_4183 PF13954 PapC N-terminal domain CH58_4184 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain CH58_4184 PF02753 Pili assembly chaperone PapD, C-terminal domain CH58_4185 PF00419 Fimbrial protein CH58_4186 PF00072 Response regulator receiver domain CH58_4186 PF00497 Bacterial extracellular solute-binding proteins, family 3 CH58_4186 PF00512 His Kinase A (phospho-acceptor) domain CH58_4186 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH58_4187 PF00072 Response regulator receiver domain CH58_4187 PF00196 Bacterial regulatory proteins, luxR family CH58_4189 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain CH58_4189 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain CH58_419 PF00842 Alanine racemase, C-terminal domain CH58_419 PF01168 Alanine racemase, N-terminal domain CH58_4190 PF01575 MaoC like domain CH58_4191 PF03328 HpcH/HpaI aldolase/citrate lyase family CH58_4192 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH58_4192 PF03466 LysR substrate binding domain CH58_4195 PF07690 Major Facilitator Superfamily CH58_4196 PF01695 IstB-like ATP binding protein CH58_4197 PF00665 Integrase core domain CH58_4197 PF02796 Helix-turn-helix domain of resolvase CH58_4198 PF07690 Major Facilitator Superfamily CH58_4199 PF04909 Amidohydrolase CH58_4200 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH58_4200 PF03466 LysR substrate binding domain CH58_4201 PF02508 CH58_4201 CH58_4202 PF00155 Aminotransferase class I and II CH58_4203 PF00324 Amino acid permease CH58_4204 PF00455 CH58_4204 CH58_4204 PF08220 DeoR-like helix-turn-helix domain CH58_4205 PF04960 Glutaminase CH58_4206 PF07690 Major Facilitator Superfamily CH58_4207 PF03239 CH58_4207 CH58_4208 PF10634 Fe2+ transport protein CH58_4209 PF04945 YHS domain CH58_4209 PF10080 CH58_4209 CH58_4210 PF02687 CH58_4210 CH58_4211 PF02687 CH58_4211 CH58_4211 PF12704 MacB-like periplasmic core domain CH58_4212 PF00005 ABC transporter CH58_4213 PF00578 AhpC/TSA family CH58_4214 PF13442 Cytochrome C oxidase, cbb3-type, subunit III CH58_4215 PF03848 Tellurite resistance protein TehB CH58_4215 PF09313 Domain of unknown function (DUF1971) CH58_4216 PF00557 Metallopeptidase family M24 CH58_4216 PF01321 Creatinase/Prolidase N-terminal domain CH58_4218 PF01522 Polysaccharide deacetylase CH58_4218 PF14883 Hypothetical glycosyl hydrolase family 13 CH58_4219 PF00535 Glycosyl transferase family 2 CH58_422 PF03895 YadA-like C-terminal region CH58_422 PF05662 Coiled stalk of trimeric autotransporter adhesin CH58_4220 PF13994 CH58_4220 CH58_4221 PF13302 Acetyltransferase (GNAT) domain CH58_4223 PF02562 PhoH-like protein CH58_4224 PF01699 Sodium/calcium exchanger protein CH58_4225 PF00672 HAMP domain CH58_4225 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH58_4225 PF07730 Histidine kinase CH58_4225 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term CH58_4226 PF00155 Aminotransferase class I and II CH58_4226 PF00392 Bacterial regulatory proteins, gntR family CH58_4229 PF00202 Aminotransferase class-III CH58_423 PF05658 Head domain of trimeric autotransporter adhesin CH58_423 PF05662 Coiled stalk of trimeric autotransporter adhesin CH58_4230 PF04958 Arginine N-succinyltransferase beta subunit CH58_4231 PF00171 Aldehyde dehydrogenase family CH58_4232 PF04996 Succinylarginine dihydrolase CH58_4233 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family CH58_4234 PF00267 Gram-negative porin CH58_4235 PF00665 Integrase core domain CH58_4235 PF01695 IstB-like ATP binding protein CH58_4235 PF02796 Helix-turn-helix domain of resolvase CH58_4237 PF05013 N-formylglutamate amidohydrolase CH58_4238 PF01979 Amidohydrolase family CH58_4239 PF00392 Bacterial regulatory proteins, gntR family CH58_4239 PF07702 UTRA domain CH58_424 PF01510 N-acetylmuramoyl-L-alanine amidase CH58_4240 PF01979 Amidohydrolase family CH58_4241 PF05962 HutD CH58_4242 PF00425 chorismate binding enzyme CH58_4243 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III CH58_4244 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal CH58_4245 PF01370 NAD dependent epimerase/dehydratase family CH58_4246 PF00753 Metallo-beta-lactamase superfamily CH58_4248 PF01370 NAD dependent epimerase/dehydratase family CH58_4249 PF13506 Glycosyl transferase family 21 CH58_425 PF04344 Chemotaxis phosphatase, CheZ CH58_4251 PF04101 Glycosyltransferase family 28 C-terminal domain CH58_4254 PF00872 CH58_4254 CH58_4255 PF07661 CH58_4255 CH58_4255 PF08238 Sel1 repeat CH58_4257 PF13226 CH58_4257 CH58_4258 PF02502 Ribose/Galactose Isomerase CH58_4258 PF12408 Ribose-5-phosphate isomerase CH58_4259 PF08242 Methyltransferase domain CH58_426 PF00072 Response regulator receiver domain CH58_4260 PF00106 short chain dehydrogenase CH58_4264 PF13646 HEAT repeats CH58_4265 PF12697 Alpha/beta hydrolase family CH58_4266 PF07883 Cupin domain CH58_4267 PF02627 Carboxymuconolactone decarboxylase family CH58_4268 PF00512 His Kinase A (phospho-acceptor) domain CH58_4268 PF00672 HAMP domain CH58_4268 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH58_4269 PF00072 Response regulator receiver domain CH58_4269 PF00486 Transcriptional regulatory protein, C terminal CH58_427 PF00072 Response regulator receiver domain CH58_427 PF01339 CheB methylesterase CH58_4270 PF01738 Dienelactone hydrolase family CH58_4271 PF12682 Flavodoxin CH58_4272 PF14358 CH58_4272 CH58_4273 PF13316 CH58_4273 CH58_4275 PF07859 alpha/beta hydrolase fold CH58_4276 PF00581 Rhodanese-like domain CH58_4277 PF00665 Integrase core domain CH58_4279 PF01926 50S ribosome-binding GTPase CH58_4279 PF06071 Protein of unknown function (DUF933) CH58_428 PF01739 CheR methyltransferase, SAM binding domain CH58_428 PF03705 CheR methyltransferase, all-alpha domain CH58_4280 PF01195 Peptidyl-tRNA hydrolase CH58_4281 PF10762 CH58_4281 CH58_4282 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase CH58_4282 PF14572 Phosphoribosyl synthetase-associated domain CH58_4283 PF00288 GHMP kinases N terminal domain CH58_4283 PF08544 GHMP kinases C terminal CH58_4284 PF03550 Outer membrane lipoprotein LolB CH58_4285 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain CH58_4285 PF01488 Shikimate / quinate 5-dehydrogenase CH58_4285 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain CH58_4286 PF00472 RF-1 domain CH58_4286 PF03462 PCRF domain CH58_4287 PF13847 Methyltransferase domain CH58_4288 PF04247 CH58_4288 CH58_4289 PF13369 CH58_4289 CH58_4289 PF13371 Tetratricopeptide repeat CH58_429 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CH58_429 PF00672 HAMP domain CH58_429 PF02203 Tar ligand binding domain homologue CH58_4290 PF00793 DAHP synthetase I family CH58_4292 PF01695 IstB-like ATP binding protein CH58_4293 PF00665 Integrase core domain CH58_4293 PF02796 Helix-turn-helix domain of resolvase CH58_4294 PF00916 CH58_4294 CH58_4296 PF03009 Glycerophosphoryl diester phosphodiesterase family CH58_4297 PF13416 Bacterial extracellular solute-binding protein CH58_4298 PF00528 Binding-protein-dependent transport system inner membrane component CH58_4299 PF00528 Binding-protein-dependent transport system inner membrane component CH58_430 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CH58_430 PF00672 HAMP domain CH58_430 PF02203 Tar ligand binding domain homologue CH58_4300 PF00005 ABC transporter CH58_4301 PF01797 Transposase IS200 like CH58_4302 PF00005 ABC transporter CH58_4303 PF03009 Glycerophosphoryl diester phosphodiesterase family CH58_4304 PF00480 ROK family CH58_4304 PF13412 Winged helix-turn-helix DNA-binding CH58_4306 PF02811 PHP domain CH58_4307 PF02613 Nitrate reductase delta subunit CH58_4308 PF07273 Protein of unknown function (DUF1439) CH58_4309 PF07690 Major Facilitator Superfamily CH58_4310 PF13302 Acetyltransferase (GNAT) domain CH58_4311 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CH58_4312 PF03023 CH58_4312 CH58_4313 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB CH58_4313 PF08479 POTRA domain, ShlB-type CH58_4313 PF17287 CH58_4313 CH58_4314 PF05860 haemagglutination activity domain CH58_4314 PF13332 CH58_4314 CH58_4315 PF00750 tRNA synthetases class I (R) CH58_4315 PF03485 Arginyl tRNA synthetase N terminal domain CH58_4315 PF05746 DALR anticodon binding domain CH58_4316 PF06185 YecM protein CH58_4317 PF03932 CutC family CH58_4318 PF08003 Protein of unknown function (DUF1698) CH58_432 PF10101 CH58_432 CH58_4323 PF02811 PHP domain CH58_4323 PF07733 Bacterial DNA polymerase III alpha subunit CH58_4323 PF14579 Helix-hairpin-helix motif CH58_4324 PF07728 AAA domain (dynein-related subfamily) CH58_4325 PF06213 CH58_4325 CH58_4325 PF11775 CH58_4325 CH58_4326 PF01695 IstB-like ATP binding protein CH58_4328 PF00665 Integrase core domain CH58_4328 PF02796 Helix-turn-helix domain of resolvase CH58_4329 PF06213 CH58_4329 CH58_433 PF03797 Autotransporter beta-domain CH58_4330 PF00589 Phage integrase family CH58_4332 PF09255 Caf1 Capsule antigen CH58_4333 PF00577 Outer membrane usher protein CH58_4333 PF13953 PapC C-terminal domain CH58_4333 PF13954 PapC N-terminal domain CH58_4334 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain CH58_4334 PF02753 Pili assembly chaperone PapD, C-terminal domain CH58_4335 PF06445 GyrI-like small molecule binding domain CH58_4335 PF12833 Helix-turn-helix domain CH58_4336 PF00872 CH58_4336 CH58_4337 PF01548 CH58_4337 CH58_4337 PF02371 CH58_4337 CH58_4338 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) CH58_434 PF08348 CH58_434 CH58_434 PF13309 CH58_434 CH58_4340 PF13091 PLD-like domain CH58_4342 PF04754 CH58_4342 CH58_4343 PF00239 Resolvase, N terminal domain CH58_4344 PF05016 Plasmid stabilisation system protein CH58_4345 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system CH58_4346 PF13614 AAA domain CH58_4347 PF02195 ParB-like nuclease domain CH58_4347 PF08775 ParB family CH58_4348 PF13191 AAA ATPase domain CH58_435 PF01261 Xylose isomerase-like TIM barrel CH58_4350 PF01555 DNA methylase CH58_4352 PF07128 CH58_4352 CH58_4354 PF07275 Antirestriction protein (ArdA) CH58_4356 PF06006 Bacterial protein of unknown function (DUF905) CH58_4357 PF02195 ParB-like nuclease domain CH58_4358 PF00665 Integrase core domain CH58_4358 PF02796 Helix-turn-helix domain of resolvase CH58_4359 PF01695 IstB-like ATP binding protein CH58_436 PF01042 Endoribonuclease L-PSP CH58_4360 PF02413 CH58_4360 CH58_4362 PF03335 Phage tail fibre repeat CH58_4362 PF03406 CH58_4362 CH58_4362 PF07484 Phage Tail Collar Domain CH58_4363 PF14301 CH58_4363 CH58_4364 PF09327 CH58_4364 CH58_4364 PF12421 CH58_4364 CH58_4364 PF13550 CH58_4364 CH58_4366 PF00877 NlpC/P60 family CH58_4366 PF14464 Prokaryotic homologs of the JAB domain CH58_4367 PF05100 CH58_4367 CH58_4368 PF05939 CH58_4368 CH58_4369 PF09718 CH58_4369 CH58_437 PF07690 Major Facilitator Superfamily CH58_4373 PF02368 Bacterial Ig-like domain (group 2) CH58_4379 PF02368 Bacterial Ig-like domain (group 2) CH58_438 PF01584 CheW-like domain CH58_4383 PF03237 Terminase-like family CH58_4388 PF00005 ABC transporter CH58_4389 PF02195 ParB-like nuclease domain CH58_439 PF01584 CheW-like domain CH58_439 PF01627 Hpt domain CH58_439 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH58_439 PF02895 Signal transducing histidine kinase, homodimeric domain CH58_439 PF09078 CheY binding CH58_4390 PF02195 ParB-like nuclease domain CH58_4391 PF00270 DEAD/DEAH box helicase CH58_4391 PF00271 Helicase conserved C-terminal domain CH58_4394 PF03614 CH58_4394 CH58_4397 PF01797 Transposase IS200 like CH58_440 PF00691 OmpA family CH58_440 PF13677 CH58_440 CH58_4400 PF13476 AAA domain CH58_4402 PF00149 Calcineurin-like phosphoesterase CH58_4403 PF09084 NMT1/THI5 like CH58_4405 PF01051 Initiator Replication protein CH58_441 PF01618 CH58_441 CH58_4410 PF02796 Helix-turn-helix domain of resolvase CH58_4412 PF01695 IstB-like ATP binding protein CH58_4413 PF10765 Protein of unknown function (DUF2591) CH58_4414 PF01145 SPFH domain / Band 7 family CH58_4416 PF00154 recA bacterial DNA recombination protein CH58_4418 PF01367 5'-3' exonuclease, C-terminal SAM fold CH58_4418 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain CH58_442 PF05280 Flagellar transcriptional activator (FlhC) CH58_4421 PF09619 Type III secretion system lipoprotein chaperone (YscW) CH58_4424 PF05932 Tir chaperone protein (CesT) family CH58_4425 PF00263 CH58_4425 CH58_4425 PF03958 Bacterial type II/III secretion system short domain CH58_4426 PF16693 CH58_4426 CH58_4426 PF16697 CH58_4426 CH58_4427 PF08988 Protein of unknown function (DUF1895) CH58_4428 PF09392 Type III secretion needle MxiH like CH58_4429 PF09477 Bacterial type II secretion system chaperone protein (type_III_yscG) CH58_443 PF05247 Flagellar transcriptional activator (FlhD) CH58_4430 PF09025 YopR Core CH58_4431 PF17001 CH58_4431 CH58_4432 PF01514 Secretory protein of YscJ/FliF family CH58_4433 PF06578 CH58_4433 CH58_4434 PF02108 CH58_4434 CH58_4435 PF09013 YopH, N-terminal CH58_4436 PF01527 Transposase CH58_4437 PF01695 IstB-like ATP binding protein CH58_4439 PF00665 Integrase core domain CH58_4439 PF02796 Helix-turn-helix domain of resolvase CH58_444 PF00122 E1-E2 ATPase CH58_444 PF00689 Cation transporting ATPase, C-terminus CH58_444 PF00690 Cation transporter/ATPase, N-terminus CH58_444 PF00702 haloacid dehalogenase-like hydrolase CH58_4441 PF13683 CH58_4441 CH58_4442 PF00102 Protein-tyrosine phosphatase CH58_4442 PF09013 YopH, N-terminal CH58_4443 PF13683 CH58_4443 CH58_4444 PF03421 CH58_4444 CH58_4445 PF00069 Protein kinase domain CH58_4445 PF09632 Rac1-binding domain CH58_4448 PF13683 CH58_4448 CH58_445 PF02308 CH58_445 CH58_4452 PF02387 CH58_4452 CH58_4453 PF10723 Replication regulatory protein RepB CH58_4454 PF13276 CH58_4454 CH58_4455 PF00665 Integrase core domain CH58_4456 PF01527 Transposase CH58_4459 PF03895 YadA-like C-terminal region CH58_4459 PF05658 Head domain of trimeric autotransporter adhesin CH58_4459 PF05662 Coiled stalk of trimeric autotransporter adhesin CH58_446 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CH58_446 PF02203 Tar ligand binding domain homologue CH58_4462 PF01526 CH58_4462 CH58_4462 PF13700 CH58_4462 CH58_4464 PF00239 Resolvase, N terminal domain CH58_4464 PF02796 Helix-turn-helix domain of resolvase CH58_4467 PF01527 Transposase CH58_4468 PF13276 CH58_4468 CH58_4468 PF13683 CH58_4468 CH58_4469 PF05932 Tir chaperone protein (CesT) family CH58_447 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CH58_4470 PF01695 IstB-like ATP binding protein CH58_4471 PF00665 Integrase core domain CH58_4472 PF13683 CH58_4472 CH58_4473 PF05932 Tir chaperone protein (CesT) family CH58_4474 PF03545 Yersinia virulence determinant (YopE) CH58_4474 PF09020 YopE, N terminal CH58_4475 PF05016 Plasmid stabilisation system protein CH58_4476 PF03693 Uncharacterised protein family (UPF0156) CH58_4478 PF02195 ParB-like nuclease domain CH58_4479 PF00376 MerR family regulatory protein CH58_4479 PF13614 AAA domain CH58_448 PF10781 CH58_448 CH58_4480 PF13683 CH58_4480 CH58_4481 PF13276 CH58_4481 CH58_4482 PF01527 Transposase CH58_4483 PF05818 CH58_4483 CH58_4485 PF03543 Yersinia/Haemophilus virulence surface antigen CH58_4486 PF05932 Tir chaperone protein (CesT) family CH58_4489 PF00872 CH58_4489 CH58_449 PF00313 'Cold-shock' DNA-binding domain CH58_4490 PF12468 Type III secretion system leucine rich repeat protein CH58_4491 PF05844 YopD protein CH58_4492 PF04888 CH58_4492 CH58_4493 PF07720 Tetratricopeptide repeat CH58_4494 PF04792 V antigen (LcrV) protein CH58_4495 PF07216 CH58_4495 CH58_4496 PF09621 CH58_4496 CH58_4497 PF00771 FHIPEP family CH58_4499 PF09474 CH58_4499 CH58_450 PF01695 IstB-like ATP binding protein CH58_4501 PF09059 TyeA CH58_4502 PF07201 HrpJ-like domain CH58_4503 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CH58_4503 PF02874 ATP synthase alpha/beta family, beta-barrel domain CH58_4504 PF07321 Type III secretion protein YscO CH58_4505 PF02120 Flagellar hook-length control protein FliK CH58_4506 PF01052 Surface presentation of antigens (SPOA) CH58_4507 PF00813 CH58_4507 CH58_4508 PF01313 CH58_4508 CH58_4509 PF01311 CH58_4509 CH58_451 PF01695 IstB-like ATP binding protein CH58_4510 PF01312 FlhB HrpN YscU SpaS Family CH58_4511 PF01695 IstB-like ATP binding protein CH58_4512 PF00665 Integrase core domain CH58_4512 PF02796 Helix-turn-helix domain of resolvase CH58_4513 PF05973 CH58_4513 CH58_4514 PF13744 Helix-turn-helix domain CH58_4515 PF01278 Omptin family CH58_4517 PF16754 CH58_4517 CH58_4518 PF16765 CH58_4518 CH58_4519 PF01815 Rop protein CH58_452 PF00665 Integrase core domain CH58_452 PF02796 Helix-turn-helix domain of resolvase CH58_453 PF00703 Glycosyl hydrolases family 2 CH58_453 PF02836 Glycosyl hydrolases family 2, TIM barrel domain CH58_453 PF02837 Glycosyl hydrolases family 2, sugar binding domain CH58_453 PF02929 Beta galactosidase small chain CH58_453 PF16353 CH58_453 CH58_454 PF00107 Zinc-binding dehydrogenase CH58_454 PF08240 Alcohol dehydrogenase GroES-like domain CH58_455 PF10777 CH58_455 CH58_456 PF01037 AsnC family CH58_456 PF13412 Winged helix-turn-helix DNA-binding CH58_457 PF11004 CH58_457 CH58_458 PF14001 CH58_458 CH58_459 PF00328 Histidine phosphatase superfamily (branch 2) CH58_46 PF13554 Bacteriophage related domain of unknown function CH58_461 PF01638 HxlR-like helix-turn-helix CH58_462 PF05368 NmrA-like family CH58_463 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CH58_463 PF08447 PAS fold CH58_465 PF00356 Bacterial regulatory proteins, lacI family CH58_465 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family CH58_466 PF00180 Isocitrate/isopropylmalate dehydrogenase CH58_467 PF00849 RNA pseudouridylate synthase CH58_468 PF00293 NUDIX domain CH58_469 PF03054 tRNA methyl transferase CH58_47 PF02368 Bacterial Ig-like domain (group 2) CH58_47 PF08813 CH58_47 CH58_470 PF04356 Protein of unknown function (DUF489) CH58_471 PF00206 Lyase CH58_471 PF08328 Adenylosuccinate lyase C-terminal CH58_472 PF13505 Outer membrane protein beta-barrel domain CH58_473 PF00072 Response regulator receiver domain CH58_473 PF00486 Transcriptional regulatory protein, C terminal CH58_474 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH58_474 PF08918 PhoQ Sensor CH58_475 PF08007 Cupin superfamily protein CH58_476 PF01546 Peptidase family M20/M25/M40 CH58_476 PF07687 Peptidase dimerisation domain CH58_477 PF02146 Sir2 family CH58_478 PF00480 ROK family CH58_479 PF02687 CH58_479 CH58_479 PF12704 MacB-like periplasmic core domain CH58_48 PF08748 CH58_48 CH58_480 PF00005 ABC transporter CH58_481 PF02687 CH58_481 CH58_481 PF12704 MacB-like periplasmic core domain CH58_482 PF00270 DEAD/DEAH box helicase CH58_482 PF00271 Helicase conserved C-terminal domain CH58_482 PF02559 CarD-like/TRCF domain CH58_482 PF03461 TRCF domain CH58_483 PF05433 CH58_483 CH58_484 PF00872 CH58_484 CH58_487 PF07992 Pyridine nucleotide-disulphide oxidoreductase CH58_488 PF05728 Uncharacterised protein family (UPF0227) CH58_489 PF00933 Glycosyl hydrolase family 3 N terminal domain CH58_49 PF06791 CH58_49 CH58_49 PF09718 CH58_49 CH58_490 PF01636 Phosphotransferase enzyme family CH58_491 PF13036 Protein of unknown function (DUF3897) CH58_492 PF07233 Protein of unknown function (DUF1425) CH58_493 PF01230 HIT domain CH58_494 PF08501 Shikimate dehydrogenase substrate binding domain CH58_495 PF01695 IstB-like ATP binding protein CH58_496 PF00665 Integrase core domain CH58_496 PF02796 Helix-turn-helix domain of resolvase CH58_497 PF01797 Transposase IS200 like CH58_498 PF00367 phosphotransferase system, EIIB CH58_498 PF02378 Phosphotransferase system, EIIC CH58_499 PF01026 TatD related DNase CH58_5 PF01709 Transcriptional regulator CH58_50 PF05939 CH58_50 CH58_500 PF09115 DNA polymerase III, delta subunit, C terminal CH58_500 PF13177 DNA polymerase III, delta subunit CH58_501 PF02223 Thymidylate kinase CH58_502 PF02618 YceG-like family CH58_503 PF01063 Aminotransferase class IV CH58_504 PF01797 Transposase IS200 like CH58_505 PF00109 Beta-ketoacyl synthase, N-terminal domain CH58_505 PF02801 Beta-ketoacyl synthase, C-terminal domain CH58_506 PF00550 Phosphopantetheine attachment site CH58_507 PF13561 Enoyl-(Acyl carrier protein) reductase CH58_508 PF00698 Acyl transferase domain CH58_509 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal CH58_509 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III CH58_51 PF01797 Transposase IS200 like CH58_510 PF02504 Fatty acid synthesis protein CH58_511 PF01783 Ribosomal L32p protein family CH58_512 PF02620 CH58_512 CH58_513 PF02545 Maf-like protein CH58_514 PF01797 Transposase IS200 like CH58_515 PF00849 RNA pseudouridylate synthase CH58_515 PF01479 S4 domain CH58_516 PF00575 S1 RNA binding domain CH58_516 PF10150 Ribonuclease E/G family CH58_516 PF12111 Polyribonucleotide phosphorylase C terminal CH58_519 PF00872 CH58_519 CH58_52 PF05100 CH58_52 CH58_520 PF03992 Antibiotic biosynthesis monooxygenase CH58_521 PF01979 Amidohydrolase family CH58_522 PF06183 DinI-like family CH58_523 PF00872 CH58_523 CH58_524 PF13991 CH58_524 CH58_525 PF00872 CH58_525 CH58_526 PF01266 FAD dependent oxidoreductase CH58_527 PF00872 CH58_527 CH58_529 PF01594 CH58_529 CH58_53 PF00877 NlpC/P60 family CH58_53 PF14464 Prokaryotic homologs of the JAB domain CH58_533 PF00892 EamA-like transporter family CH58_534 PF00196 Bacterial regulatory proteins, luxR family CH58_534 PF03472 Autoinducer binding domain CH58_535 PF00765 Autoinducer synthetase CH58_536 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH58_536 PF03466 LysR substrate binding domain CH58_538 PF00083 Sugar (and other) transporter CH58_539 PF08714 Formaldehyde-activating enzyme (Fae) CH58_540 PF00248 Aldo/keto reductase family CH58_541 PF09618 CRISPR-associated protein (Cas_Csy4) CH58_542 PF09615 CH58_542 CH58_543 PF09614 CH58_543 CH58_544 PF09611 CH58_544 CH58_546 PF01867 CRISPR associated protein Cas1 CH58_547 PF00924 Mechanosensitive ion channel CH58_55 PF03869 Arc-like DNA binding domain CH58_550 PF08950 Protein of unknown function (DUF1861) CH58_551 PF04041 Domain of unknown function (DUF377) CH58_552 PF00528 Binding-protein-dependent transport system inner membrane component CH58_553 PF00528 Binding-protein-dependent transport system inner membrane component CH58_554 PF13416 Bacterial extracellular solute-binding protein CH58_555 PF00356 Bacterial regulatory proteins, lacI family CH58_555 PF13377 Periplasmic binding protein-like domain CH58_556 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain CH58_556 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I CH58_556 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II CH58_556 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III CH58_557 PF00005 ABC transporter CH58_557 PF08402 TOBE domain CH58_560 PF14106 CH58_560 CH58_562 PF04829 CH58_562 CH58_564 PF10004 CH58_564 CH58_565 PF04829 CH58_565 CH58_565 PF05594 CH58_565 CH58_565 PF05860 haemagglutination activity domain CH58_565 PF13018 CH58_565 CH58_565 PF13332 CH58_565 CH58_566 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB CH58_566 PF08479 POTRA domain, ShlB-type CH58_566 PF17287 CH58_566 CH58_567 PF00111 2Fe-2S iron-sulfur cluster binding domain CH58_567 PF00175 Oxidoreductase NAD-binding domain CH58_567 PF00970 Oxidoreductase FAD-binding domain CH58_568 PF00355 Rieske [2Fe-2S] domain CH58_568 PF00848 Ring hydroxylating alpha subunit (catalytic domain) CH58_569 PF02028 BCCT family transporter CH58_57 PF02498 CH58_57 CH58_570 PF00180 Isocitrate/isopropylmalate dehydrogenase CH58_571 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH58_571 PF03466 LysR substrate binding domain CH58_572 PF00356 Bacterial regulatory proteins, lacI family CH58_572 PF13407 Periplasmic binding protein domain CH58_573 PF02653 CH58_573 CH58_574 PF00005 ABC transporter CH58_575 PF13407 Periplasmic binding protein domain CH58_576 PF00107 Zinc-binding dehydrogenase CH58_577 PF00892 EamA-like transporter family CH58_578 PF00583 Acetyltransferase (GNAT) family CH58_579 PF13649 Methyltransferase domain CH58_58 PF13248 CH58_58 CH58_580 PF00210 Ferritin-like domain CH58_581 PF02698 DUF218 domain CH58_582 PF00497 Bacterial extracellular solute-binding proteins, family 3 CH58_583 PF00528 Binding-protein-dependent transport system inner membrane component CH58_584 PF00005 ABC transporter CH58_585 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CH58_585 PF08448 PAS fold CH58_585 PF13426 PAS domain CH58_586 PF00665 Integrase core domain CH58_586 PF02796 Helix-turn-helix domain of resolvase CH58_587 PF01695 IstB-like ATP binding protein CH58_588 PF05971 Protein of unknown function (DUF890) CH58_589 PF07338 Protein of unknown function (DUF1471) CH58_590 PF00591 Glycosyl transferase family, a/b domain CH58_590 PF02885 Glycosyl transferase family, helical bundle domain CH58_591 PF00501 AMP-binding enzyme CH58_592 PF13378 Enolase C-terminal domain-like CH58_593 PF00378 Enoyl-CoA hydratase/isomerase family CH58_594 PF12697 Alpha/beta hydrolase family CH58_595 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CH58_595 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CH58_595 PF16582 CH58_595 CH58_596 PF00425 chorismate binding enzyme CH58_598 PF05957 CH58_598 CH58_6 PF02075 Crossover junction endodeoxyribonuclease RuvC CH58_60 PF06805 CH58_60 CH58_600 PF00920 Dehydratase family CH58_601 PF03928 Domain of unknown function (DUF336) CH58_602 PF07690 Major Facilitator Superfamily CH58_603 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CH58_603 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CH58_604 PF00356 Bacterial regulatory proteins, lacI family CH58_604 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family CH58_605 PF02638 CH58_605 CH58_606 PF00106 short chain dehydrogenase CH58_607 PF01202 Shikimate kinase CH58_608 PF04074 Domain of unknown function (DUF386) CH58_610 PF00361 NADH-Ubiquinone/plastoquinone (complex I), various chains CH58_611 PF00361 NADH-Ubiquinone/plastoquinone (complex I), various chains CH58_612 PF00361 NADH-Ubiquinone/plastoquinone (complex I), various chains CH58_612 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus CH58_613 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L CH58_614 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 CH58_615 PF12838 4Fe-4S dicluster domain CH58_616 PF00146 NADH dehydrogenase CH58_617 PF00384 Molybdopterin oxidoreductase CH58_617 PF01568 Molydopterin dinucleotide binding domain CH58_617 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CH58_617 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region CH58_617 PF13510 2Fe-2S iron-sulfur cluster binding domain CH58_618 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit CH58_618 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region CH58_619 PF01257 Thioredoxin-like [2Fe-2S] ferredoxin CH58_620 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit CH58_620 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit CH58_621 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit CH58_622 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 CH58_623 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH58_623 PF03466 LysR substrate binding domain CH58_624 PF00155 Aminotransferase class I and II CH58_625 PF13023 HD domain CH58_626 PF02080 TrkA-C domain CH58_626 PF03600 Citrate transporter CH58_627 PF13419 Haloacid dehalogenase-like hydrolase CH58_628 PF03887 YfbU domain CH58_629 PF04217 CH58_629 CH58_63 PF09327 CH58_63 CH58_63 PF13550 CH58_63 CH58_630 PF00871 Acetokinase family CH58_631 PF01515 Phosphate acetyl/butaryl transferase CH58_631 PF07085 DRTGG domain CH58_631 PF13500 AAA domain CH58_632 PF00356 Bacterial regulatory proteins, lacI family CH58_632 PF13377 Periplasmic binding protein-like domain CH58_633 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 CH58_634 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit CH58_635 PF03611 CH58_635 CH58_636 PF00293 NUDIX domain CH58_637 PF12850 Calcineurin-like phosphoesterase superfamily domain CH58_640 PF01370 NAD dependent epimerase/dehydratase family CH58_640 PF08338 Domain of unknown function (DUF1731) CH58_641 PF00005 ABC transporter CH58_642 PF00528 Binding-protein-dependent transport system inner membrane component CH58_643 PF00528 Binding-protein-dependent transport system inner membrane component CH58_644 PF00497 Bacterial extracellular solute-binding proteins, family 3 CH58_645 PF00665 Integrase core domain CH58_645 PF02796 Helix-turn-helix domain of resolvase CH58_646 PF01695 IstB-like ATP binding protein CH58_647 PF02441 Flavoprotein CH58_648 PF00156 Phosphoribosyl transferase domain CH58_648 PF13522 Glutamine amidotransferase domain CH58_649 PF02674 CH58_649 CH58_650 PF05036 Sporulation related domain CH58_651 PF02875 Mur ligase family, glutamate ligase domain CH58_651 PF08245 Mur ligase middle domain CH58_652 PF01039 Carboxyl transferase domain CH58_653 PF09335 CH58_653 CH58_654 PF01416 tRNA pseudouridine synthase CH58_655 PF01118 Semialdehyde dehydrogenase, NAD binding domain CH58_655 PF02774 Semialdehyde dehydrogenase, dimerisation domain CH58_656 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CH58_656 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CH58_656 PF11890 Domain of unknown function (DUF3410) CH58_657 PF02311 AraC-like ligand binding domain CH58_657 PF12833 Helix-turn-helix domain CH58_658 PF00892 EamA-like transporter family CH58_66 PF02413 CH58_66 CH58_660 PF00419 Fimbrial protein CH58_661 PF01177 Asp/Glu/Hydantoin racemase CH58_662 PF00109 Beta-ketoacyl synthase, N-terminal domain CH58_662 PF02801 Beta-ketoacyl synthase, C-terminal domain CH58_663 PF01266 FAD dependent oxidoreductase CH58_663 PF05430 S-adenosyl-L-methionine-dependent methyltransferase CH58_664 PF08891 CH58_664 CH58_665 PF04315 CH58_665 CH58_666 PF01925 CH58_666 CH58_667 PF03411 Penicillin-insensitive murein endopeptidase CH58_668 PF01264 Chorismate synthase CH58_669 PF05175 Methyltransferase small domain CH58_67 PF00872 CH58_67 CH58_670 PF01713 Smr domain CH58_671 PF00300 Histidine phosphatase superfamily (branch 1) CH58_672 PF00378 Enoyl-CoA hydratase/isomerase family CH58_672 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain CH58_672 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain CH58_673 PF00108 Thiolase, N-terminal domain CH58_673 PF02803 Thiolase, C-terminal domain CH58_674 PF04175 Protein of unknown function (DUF406) CH58_675 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) CH58_676 PF04333 CH58_676 CH58_677 PF14559 Tetratricopeptide repeat CH58_678 PF03918 Cytochrome C biogenesis protein CH58_679 PF08534 Redoxin CH58_68 PF07690 Major Facilitator Superfamily CH58_680 PF01578 CH58_680 CH58_680 PF16327 CH58_680 CH58_681 PF03100 CcmE CH58_682 PF04995 CH58_682 CH58_683 PF01578 CH58_683 CH58_684 PF03379 CH58_684 CH58_685 PF00005 ABC transporter CH58_688 PF04011 LemA family CH58_689 PF09972 CH58_689 CH58_69 PF00266 Aminotransferase class-V CH58_690 PF03831 PhnA protein CH58_690 PF08274 PhnA Zinc-Ribbon CH58_692 PF04965 Gene 25-like lysozyme CH58_693 PF07024 ImpE protein CH58_695 PF05488 PAAR motif CH58_696 PF05954 Phage late control gene D protein (GPD) CH58_697 PF06744 CH58_697 CH58_697 PF06761 CH58_697 CH58_697 PF14331 CH58_697 CH58_698 PF00691 OmpA family CH58_698 PF09850 Uncharacterized protein conserved in bacteria (DUF2077) CH58_699 PF01695 IstB-like ATP binding protein CH58_7 PF01797 Transposase IS200 like CH58_700 PF01695 IstB-like ATP binding protein CH58_701 PF00665 Integrase core domain CH58_701 PF02796 Helix-turn-helix domain of resolvase CH58_702 PF09850 Uncharacterized protein conserved in bacteria (DUF2077) CH58_703 PF05936 CH58_703 CH58_704 PF12790 Type VI secretion lipoprotein CH58_705 PF05638 Protein of unknown function (DUF796) CH58_706 PF05943 CH58_706 CH58_707 PF05591 CH58_707 CH58_708 PF00419 Fimbrial protein CH58_709 PF00577 Outer membrane usher protein CH58_709 PF13953 PapC C-terminal domain CH58_710 PF00872 CH58_710 CH58_711 PF00872 CH58_711 CH58_712 PF00577 Outer membrane usher protein CH58_712 PF13954 PapC N-terminal domain CH58_713 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain CH58_713 PF02753 Pili assembly chaperone PapD, C-terminal domain CH58_714 PF16970 CH58_714 CH58_715 PF00004 ATPase family associated with various cellular activities (AAA) CH58_715 PF02861 Clp amino terminal domain CH58_715 PF07724 AAA domain (Cdc48 subfamily) CH58_715 PF10431 C-terminal, D2-small domain, of ClpB protein CH58_716 PF05947 CH58_716 CH58_717 PF06996 CH58_717 CH58_718 PF06812 CH58_718 CH58_719 PF00419 Fimbrial protein CH58_72 PF02600 Disulfide bond formation protein DsbB CH58_720 PF11397 CH58_720 CH58_722 PF00691 OmpA family CH58_723 PF08786 Domain of unknown function (DUF1795) CH58_724 PF00196 Bacterial regulatory proteins, luxR family CH58_725 PF13406 Transglycosylase SLT domain CH58_726 PF13343 Bacterial extracellular solute-binding protein CH58_727 PF00528 Binding-protein-dependent transport system inner membrane component CH58_728 PF00005 ABC transporter CH58_729 PF09900 CH58_729 CH58_73 PF06450 CH58_73 CH58_730 PF05638 Protein of unknown function (DUF796) CH58_731 PF13988 CH58_731 CH58_732 PF00384 Molybdopterin oxidoreductase CH58_732 PF01568 Molydopterin dinucleotide binding domain CH58_732 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CH58_733 PF12800 4Fe-4S binding domain CH58_733 PF13247 4Fe-4S dicluster domain CH58_734 PF04976 CH58_734 CH58_735 PF02613 Nitrate reductase delta subunit CH58_736 PF00037 4Fe-4S binding domain CH58_736 PF12838 4Fe-4S dicluster domain CH58_737 PF05643 Putative bacterial lipoprotein (DUF799) CH58_738 PF16068 CH58_738 CH58_739 PF03783 Curli production assembly/transport component CsgG CH58_74 PF00392 Bacterial regulatory proteins, gntR family CH58_74 PF07840 FadR C-terminal domain CH58_740 PF15970 CH58_740 CH58_741 PF01292 Prokaryotic cytochrome b561 CH58_742 PF00155 Aminotransferase class I and II CH58_743 PF07350 Protein of unknown function (DUF1479) CH58_744 PF02685 Glucokinase CH58_745 PF05232 CH58_745 CH58_746 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH58_746 PF03466 LysR substrate binding domain CH58_747 PF00248 Aldo/keto reductase family CH58_748 PF10697 CH58_748 CH58_749 PF01566 CH58_749 CH58_75 PF04293 CH58_75 CH58_750 PF01773 Na+ dependent nucleoside transporter N-terminus CH58_750 PF07662 Na+ dependent nucleoside transporter C-terminus CH58_750 PF07670 Nucleoside recognition CH58_754 PF00749 tRNA synthetases class I (E and Q), catalytic domain CH58_755 PF01797 Transposase IS200 like CH58_757 PF06042 Bacterial protein of unknown function (DUF925) CH58_758 PF14282 CH58_758 CH58_759 PF12843 CH58_759 CH58_76 PF01266 FAD dependent oxidoreductase CH58_760 PF00533 BRCA1 C Terminus (BRCT) domain CH58_760 PF01653 NAD-dependent DNA ligase adenylation domain CH58_760 PF03119 NAD-dependent DNA ligase C4 zinc finger domain CH58_760 PF03120 NAD-dependent DNA ligase OB-fold domain CH58_760 PF12826 Helix-hairpin-helix motif CH58_760 PF14520 Helix-hairpin-helix domain CH58_761 PF04354 ZipA, C-terminal FtsZ-binding domain CH58_762 PF07264 Etoposide-induced protein 2 CH58_763 PF00291 Pyridoxal-phosphate dependent enzyme CH58_764 PF00381 PTS HPr component phosphorylation site CH58_765 PF00391 PEP-utilising enzyme, mobile domain CH58_765 PF02896 PEP-utilising enzyme, TIM barrel domain CH58_765 PF05524 PEP-utilising enzyme, N-terminal CH58_766 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 CH58_767 PF01797 Transposase IS200 like CH58_769 PF00512 His Kinase A (phospho-acceptor) domain CH58_769 PF00672 HAMP domain CH58_769 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH58_77 PF07690 Major Facilitator Superfamily CH58_770 PF00072 Response regulator receiver domain CH58_770 PF00486 Transcriptional regulatory protein, C terminal CH58_771 PF16576 CH58_771 CH58_772 PF00005 ABC transporter CH58_772 PF02687 CH58_772 CH58_772 PF12704 MacB-like periplasmic core domain CH58_773 PF00581 Rhodanese-like domain CH58_773 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CH58_773 PF07992 Pyridine nucleotide-disulphide oxidoreductase CH58_775 PF11755 CH58_775 CH58_776 PF00557 Metallopeptidase family M24 CH58_776 PF01321 Creatinase/Prolidase N-terminal domain CH58_777 PF01321 Creatinase/Prolidase N-terminal domain CH58_778 PF00155 Aminotransferase class I and II CH58_779 PF00092 von Willebrand factor type A domain CH58_78 PF02678 Pirin CH58_78 PF05726 Pirin C-terminal cupin domain CH58_780 PF00512 His Kinase A (phospho-acceptor) domain CH58_780 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH58_781 PF00072 Response regulator receiver domain CH58_781 PF00486 Transcriptional regulatory protein, C terminal CH58_783 PF00291 Pyridoxal-phosphate dependent enzyme CH58_784 PF00005 ABC transporter CH58_785 PF00528 Binding-protein-dependent transport system inner membrane component CH58_786 PF00528 Binding-protein-dependent transport system inner membrane component CH58_787 PF13531 Bacterial extracellular solute-binding protein CH58_788 PF07690 Major Facilitator Superfamily CH58_789 PF01380 SIS domain CH58_789 PF01418 Helix-turn-helix domain, rpiR family CH58_79 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH58_79 PF03466 LysR substrate binding domain CH58_790 PF04074 Domain of unknown function (DUF386) CH58_791 PF00480 ROK family CH58_792 PF12468 Type III secretion system leucine rich repeat protein CH58_792 PF13855 Leucine rich repeat CH58_793 PF04131 Putative N-acetylmannosamine-6-phosphate epimerase CH58_794 PF00701 Dihydrodipicolinate synthetase family CH58_795 PF04261 Dyp-type peroxidase family CH58_796 PF06572 Protein of unknown function (DUF1131) CH58_797 PF04076 Bacterial OB fold (BOF) protein CH58_798 PF03212 Pertactin CH58_798 PF03797 Autotransporter beta-domain CH58_8 PF01330 RuvA N terminal domain CH58_8 PF07499 RuvA, C-terminal domain CH58_8 PF14520 Helix-hairpin-helix domain CH58_80 PF00892 EamA-like transporter family CH58_801 PF00583 Acetyltransferase (GNAT) family CH58_802 PF01218 Coproporphyrinogen III oxidase CH58_803 PF02639 CH58_803 CH58_804 PF00390 Malic enzyme, N-terminal domain CH58_804 PF01515 Phosphate acetyl/butaryl transferase CH58_804 PF03949 Malic enzyme, NAD binding domain CH58_805 PF00293 NUDIX domain CH58_806 PF01695 IstB-like ATP binding protein CH58_807 PF01695 IstB-like ATP binding protein CH58_808 PF00665 Integrase core domain CH58_81 PF04285 CH58_81 CH58_810 PF03264 NapC/NirT cytochrome c family, N-terminal region CH58_811 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) CH58_812 PF00384 Molybdopterin oxidoreductase CH58_812 PF01568 Molydopterin dinucleotide binding domain CH58_812 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CH58_812 PF10518 TAT (twin-arginine translocation) pathway signal sequence CH58_813 PF03927 NapD protein CH58_814 PF12838 4Fe-4S dicluster domain CH58_814 PF13187 4Fe-4S dicluster domain CH58_815 PF00072 Response regulator receiver domain CH58_815 PF00196 Bacterial regulatory proteins, luxR family CH58_816 PF09904 Winged helix-turn helix CH58_817 PF00873 AcrB/AcrD/AcrF family CH58_819 PF04307 CH58_819 CH58_82 PF06798 CH58_82 CH58_82 PF08298 PrkA AAA domain CH58_820 PF04055 Radical SAM superfamily CH58_820 PF13353 4Fe-4S single cluster domain CH58_821 PF00884 Sulfatase CH58_822 PF00005 ABC transporter CH58_823 PF00528 Binding-protein-dependent transport system inner membrane component CH58_824 PF13416 Bacterial extracellular solute-binding protein CH58_825 PF12688 Tetratrico peptide repeat CH58_826 PF03960 ArsC family CH58_827 PF01546 Peptidase family M20/M25/M40 CH58_827 PF07687 Peptidase dimerisation domain CH58_828 PF02557 D-alanyl-D-alanine carboxypeptidase CH58_829 PF13980 CH58_829 CH58_83 PF06629 CH58_83 CH58_830 PF05127 Helicase CH58_830 PF08351 Domain of unknown function (DUF1726) CH58_830 PF13718 GNAT acetyltransferase 2 CH58_830 PF17176 CH58_830 CH58_831 PF04284 CH58_831 CH58_832 PF04228 CH58_832 CH58_833 PF01259 SAICAR synthetase CH58_834 PF01797 Transposase IS200 like CH58_835 PF06804 NlpB/DapX lipoprotein CH58_836 PF00701 Dihydrodipicolinate synthetase family CH58_837 PF13740 ACT domain CH58_838 PF00578 AhpC/TSA family CH58_84 PF01263 Aldose 1-epimerase CH58_841 PF01594 CH58_841 CH58_842 PF01435 Peptidase family M48 CH58_842 PF07720 Tetratricopeptide repeat CH58_842 PF14559 Tetratricopeptide repeat CH58_843 PF03960 ArsC family CH58_844 PF00308 Bacterial dnaA protein CH58_845 PF01797 Transposase IS200 like CH58_846 PF14681 Uracil phosphoribosyltransferase CH58_847 PF00586 AIR synthase related protein, N-terminal domain CH58_847 PF02769 AIR synthase related protein, C-terminal domain CH58_848 PF00551 Formyl transferase CH58_849 PF13302 Acetyltransferase (GNAT) domain CH58_85 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain CH58_85 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain CH58_851 PF03692 CH58_851 CH58_852 PF00005 ABC transporter CH58_853 PF00528 Binding-protein-dependent transport system inner membrane component CH58_854 PF00528 Binding-protein-dependent transport system inner membrane component CH58_855 PF02503 Polyphosphate kinase middle domain CH58_855 PF13089 Polyphosphate kinase N-terminal domain CH58_855 PF13090 Polyphosphate kinase C-terminal domain CH58_856 PF02541 Ppx/GppA phosphatase family CH58_857 PF00571 CBS domain CH58_857 PF01769 Divalent cation transporter CH58_857 PF03448 MgtE intracellular N domain CH58_858 PF00012 Hsp70 protein CH58_859 PF00665 Integrase core domain CH58_859 PF02796 Helix-turn-helix domain of resolvase CH58_86 PF01641 SelR domain CH58_860 PF01695 IstB-like ATP binding protein CH58_861 PF00528 Binding-protein-dependent transport system inner membrane component CH58_862 PF00528 Binding-protein-dependent transport system inner membrane component CH58_863 PF13416 Bacterial extracellular solute-binding protein CH58_864 PF00202 Aminotransferase class-III CH58_865 PF00155 Aminotransferase class I and II CH58_865 PF00392 Bacterial regulatory proteins, gntR family CH58_866 PF00005 ABC transporter CH58_866 PF08402 TOBE domain CH58_867 PF13437 HlyD family secretion protein CH58_867 PF13533 Biotin-lipoyl like CH58_868 PF00873 AcrB/AcrD/AcrF family CH58_869 PF00873 AcrB/AcrD/AcrF family CH58_87 PF07023 CH58_87 CH58_870 PF07690 Major Facilitator Superfamily CH58_871 PF00512 His Kinase A (phospho-acceptor) domain CH58_871 PF00672 HAMP domain CH58_872 PF00072 Response regulator receiver domain CH58_872 PF00486 Transcriptional regulatory protein, C terminal CH58_873 PF07411 Domain of unknown function (DUF1508) CH58_874 PF01136 CH58_874 CH58_874 PF16325 CH58_874 CH58_875 PF00781 Diacylglycerol kinase catalytic domain CH58_876 PF08816 Inhibitor of vertebrate lysozyme (Ivy) CH58_879 PF08543 Phosphomethylpyrimidine kinase CH58_88 PF00857 Isochorismatase family CH58_880 PF06092 CH58_880 CH58_882 PF00872 CH58_882 CH58_884 PF06836 CH58_884 CH58_885 PF06836 CH58_885 CH58_886 PF06836 CH58_886 CH58_888 PF05638 Protein of unknown function (DUF796) CH58_889 PF01797 Transposase IS200 like CH58_89 PF00710 Asparaginase CH58_890 PF00117 Glutamine amidotransferase class-I CH58_890 PF00958 GMP synthase C terminal domain CH58_890 PF02540 NAD synthase CH58_891 PF00478 IMP dehydrogenase / GMP reductase domain CH58_891 PF00571 CBS domain CH58_892 PF02601 CH58_892 CH58_892 PF13742 CH58_892 CH58_893 PF07191 zinc-ribbons CH58_894 PF03547 CH58_894 CH58_895 PF01926 50S ribosome-binding GTPase CH58_895 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal CH58_896 PF13360 PQQ-like domain CH58_897 PF09976 Tetratricopeptide repeat CH58_898 PF03129 Anticodon binding domain CH58_898 PF13393 Histidyl-tRNA synthetase CH58_899 PF04551 GcpE protein CH58_9 PF05491 Holliday junction DNA helicase ruvB C-terminus CH58_9 PF05496 Holliday junction DNA helicase ruvB N-terminus CH58_90 PF01343 Peptidase family S49 CH58_900 PF13413 Helix-turn-helix domain CH58_900 PF13464 CH58_900 CH58_901 PF13181 Tetratricopeptide repeat CH58_901 PF13431 Tetratricopeptide repeat CH58_902 PF04055 Radical SAM superfamily CH58_903 PF00334 Nucleoside diphosphate kinase CH58_904 PF00030 Beta/Gamma crystallin CH58_904 PF08964 Beta/Gamma crystallin CH58_904 PF09101 Exotoxin A binding CH58_905 PF03212 Pertactin CH58_905 PF03797 Autotransporter beta-domain CH58_906 PF03212 Pertactin CH58_906 PF03797 Autotransporter beta-domain CH58_907 PF03797 Autotransporter beta-domain CH58_908 PF07179 CH58_908 CH58_908 PF14581 CH58_908 CH58_909 PF00883 Cytosol aminopeptidase family, catalytic domain CH58_909 PF12404 CH58_909 CH58_91 PF00881 Nitroreductase family CH58_910 PF04384 Iron-sulphur cluster assembly CH58_911 PF00111 2Fe-2S iron-sulfur cluster binding domain CH58_912 PF00012 Hsp70 protein CH58_913 PF00226 DnaJ domain CH58_913 PF07743 HSCB C-terminal oligomerisation domain CH58_914 PF01521 Iron-sulphur cluster biosynthesis CH58_915 PF01592 NifU-like N terminal domain CH58_916 PF00266 Aminotransferase class-V CH58_917 PF02082 Transcriptional regulator CH58_918 PF00588 SpoU rRNA Methylase family CH58_919 PF00459 Inositol monophosphatase family CH58_92 PF00586 AIR synthase related protein, N-terminal domain CH58_92 PF02769 AIR synthase related protein, C-terminal domain CH58_920 PF03824 CH58_920 CH58_921 PF06226 CH58_921 CH58_922 PF12832 MFS_1 like family CH58_923 PF00874 PRD domain CH58_924 PF13505 Outer membrane protein beta-barrel domain CH58_925 PF00464 Serine hydroxymethyltransferase CH58_926 PF00042 Globin CH58_926 PF00175 Oxidoreductase NAD-binding domain CH58_926 PF00970 Oxidoreductase FAD-binding domain CH58_929 PF00543 Nitrogen regulatory protein P-II CH58_93 PF01131 DNA topoisomerase CH58_93 PF01751 Toprim domain CH58_930 PF00795 Carbon-nitrogen hydrolase CH58_930 PF02540 NAD synthase CH58_931 PF00072 Response regulator receiver domain CH58_931 PF00158 Sigma-54 interaction domain CH58_932 PF13942 CH58_932 CH58_933 PF00512 His Kinase A (phospho-acceptor) domain CH58_933 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH58_934 PF01797 Transposase IS200 like CH58_938 PF02769 AIR synthase related protein, C-terminal domain CH58_938 PF13507 CobB/CobQ-like glutamine amidotransferase domain CH58_939 PF00497 Bacterial extracellular solute-binding proteins, family 3 CH58_939 PF01464 Transglycosylase SLT domain CH58_94 PF07383 CH58_94 CH58_940 PF14437 CH58_940 CH58_941 PF12710 haloacid dehalogenase-like hydrolase CH58_942 PF01380 SIS domain CH58_943 PF01380 SIS domain CH58_943 PF01418 Helix-turn-helix domain, rpiR family CH58_944 PF12838 4Fe-4S dicluster domain CH58_945 PF01797 Transposase IS200 like CH58_946 PF01648 4'-phosphopantetheinyl transferase superfamily CH58_947 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ CH58_948 PF01695 IstB-like ATP binding protein CH58_949 PF00665 Integrase core domain CH58_949 PF02796 Helix-turn-helix domain of resolvase CH58_95 PF00293 NUDIX domain CH58_950 PF01522 Polysaccharide deacetylase CH58_951 PF04069 Substrate binding domain of ABC-type glycine betaine transport system CH58_952 PF00528 Binding-protein-dependent transport system inner membrane component CH58_953 PF00005 ABC transporter CH58_953 PF00571 CBS domain CH58_954 PF00268 Ribonucleotide reductase, small chain CH58_955 PF00317 Ribonucleotide reductase, all-alpha domain CH58_955 PF02867 Ribonucleotide reductase, barrel domain CH58_955 PF08343 Ribonucleotide reductase N-terminal CH58_956 PF07972 NrdI Flavodoxin like CH58_957 PF00462 Glutaredoxin CH58_958 PF06392 CH58_958 CH58_959 PF09400 Protein of unknown function (DUF2002) CH58_96 PF03372 Endonuclease/Exonuclease/phosphatase family CH58_960 PF00872 CH58_960 CH58_961 PF09400 Protein of unknown function (DUF2002) CH58_962 PF06711 CH58_962 CH58_963 PF04899 CH58_963 CH58_964 PF00313 'Cold-shock' DNA-binding domain CH58_965 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CH58_966 PF00528 Binding-protein-dependent transport system inner membrane component CH58_967 PF00528 Binding-protein-dependent transport system inner membrane component CH58_968 PF00005 ABC transporter CH58_969 PF00005 ABC transporter CH58_97 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH58_971 PF00547 Urease, gamma subunit CH58_972 PF00699 Urease beta subunit CH58_973 PF00449 Urease alpha-subunit, N-terminal domain CH58_973 PF01979 Amidohydrolase family CH58_974 PF02814 UreE urease accessory protein, N-terminal domain CH58_974 PF05194 UreE urease accessory protein, C-terminal domain CH58_975 PF01730 UreF CH58_976 PF02492 CobW/HypB/UreG, nucleotide-binding domain CH58_977 PF01774 UreD urease accessory protein CH58_978 PF03253 Urea transporter CH58_979 PF03824 CH58_979 CH58_980 PF06411 HdeA/HdeB family CH58_981 PF02254 TrkA-N domain CH58_981 PF07885 Ion channel CH58_982 PF02537 CH58_982 CH58_983 PF02537 CH58_983 CH58_984 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit CH58_985 PF02378 Phosphotransferase system, EIIC CH58_986 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit CH58_987 PF07883 Cupin domain CH58_987 PF12833 Helix-turn-helix domain CH58_988 PF04794 YdjC-like protein CH58_991 PF03925 SeqA protein CH58_991 PF17206 CH58_991 CH58_992 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain CH58_992 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I CH58_992 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II CH58_992 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III CH58_995 PF00892 EamA-like transporter family CH58_996 PF00072 Response regulator receiver domain CH58_996 PF00486 Transcriptional regulatory protein, C terminal CH58_997 PF00512 His Kinase A (phospho-acceptor) domain CH58_997 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH58_997 PF02702 Osmosensitive K+ channel His kinase sensor domain CH58_997 PF13492 GAF domain CH58_997 PF13493 Domain of unknown function (DUF4118) CH58_998 PF02669 CH58_998 CH58_999 PF00122 E1-E2 ATPase CH58_999 PF00702 haloacid dehalogenase-like hydrolase