CH58_1007 SM00796 Allophanate hydrolase subunit 1 CH58_1008 SM00797 Allophanate hydrolase subunit 2 CH58_1013 SM00986 Uracil DNA glycosylase superfamily CH58_1013 SM00987 UreE urease accessory protein, C-terminal domain CH58_1017 SM00248 ankyrin repeats CH58_1019 SM00487 DEAD-like helicases superfamily CH58_1019 SM00490 helicase superfamily c-terminal domain CH58_1029 SM00358 Double-stranded RNA binding motif CH58_1029 SM00535 Ribonuclease III family CH58_103 SM00448 cheY-homologous receiver domain CH58_1033 SM00382 ATPases associated with a variety of cellular activities CH58_104 SM00984 UDP binding domain CH58_1043 SM01081 Putative carbohydrate binding domain CH58_1046 SM01321 CH58_1046 CH58_105 SM00528 Domain in histone-like proteins of HNS family CH58_1060 SM00729 Elongator protein 3, MiaB family, Radical SAM CH58_1063 SM00116 Domain in cystathionine beta-synthase and other proteins. CH58_1063 SM01091 Transporter associated domain CH58_1065 SM00062 Bacterial periplasmic substrate-binding proteins CH58_1068 SM00382 ATPases associated with a variety of cellular activities CH58_1080 SM00382 ATPases associated with a variety of cellular activities CH58_1081 SM00936 Penicillin-binding protein 5, C-terminal domain CH58_1084 SM00729 Elongator protein 3, MiaB family, Radical SAM CH58_1087 SM00357 Cold shock protein domain CH58_1089 SM00421 helix_turn_helix, Lux Regulon CH58_1094 SM00382 ATPases associated with a variety of cellular activities CH58_11 SM00382 ATPases associated with a variety of cellular activities CH58_1102 SM00382 ATPases associated with a variety of cellular activities CH58_1112 SM01359 CH58_1112 CH58_1112 SM01360 CH58_1112 CH58_1123 SM00869 Autotransporter beta-domain CH58_1130 SM01217 CH58_1130 CH58_1140 SM00195 Dual specificity phosphatase, catalytic domain CH58_1140 SM00404 Protein tyrosine phosphatase, catalytic domain motif CH58_1142 SM00563 Phosphate acyltransferases CH58_1153 SM01321 CH58_1153 CH58_1155 SM00840 CH58_1155 CH58_1158 SM01001 AIR carboxylase CH58_1161 SM00382 ATPases associated with a variety of cellular activities CH58_1163 SM00822 CH58_1163 CH58_1165 SM00244 prohibitin homologues CH58_1167 SM00422 helix_turn_helix, mercury resistance CH58_118 SM00382 ATPases associated with a variety of cellular activities CH58_119 SM00382 ATPases associated with a variety of cellular activities CH58_1201 SM00387 Histidine kinase-like ATPases CH58_1202 SM00493 CH58_1202 CH58_1204 SM00382 ATPases associated with a variety of cellular activities CH58_1211 SM00382 ATPases associated with a variety of cellular activities CH58_122 SM00155 Phospholipase D. Active site motifs. CH58_1226 SM00938 Nitrogen regulatory protein P-II CH58_1227 SM00382 ATPases associated with a variety of cellular activities CH58_1228 SM00382 ATPases associated with a variety of cellular activities CH58_1229 SM00344 helix_turn_helix ASNC type CH58_1237 SM00411 bacterial (prokaryotic) histone like domain CH58_1238 SM00382 ATPases associated with a variety of cellular activities CH58_1238 SM00464 Found in ATP-dependent protease La (LON) CH58_1239 SM00382 ATPases associated with a variety of cellular activities CH58_1239 SM00994 ClpX C4-type zinc finger CH58_1239 SM01086 C-terminal, D2-small domain, of ClpB protein CH58_1256 SM00981 CH58_1256 CH58_1259 SM00861 Transketolase, pyrimidine binding domain CH58_1260 SM01321 CH58_1260 CH58_1269 SM01321 CH58_1269 CH58_1270 SM01321 CH58_1270 CH58_1273 SM01323 CH58_1273 CH58_1281 SM00642 Alpha-amylase domain CH58_1285 SM00091 PAS domain CH58_1285 SM00387 Histidine kinase-like ATPases CH58_1285 SM00388 His Kinase A (phosphoacceptor) domain CH58_1286 SM00448 cheY-homologous receiver domain CH58_1286 SM00862 Transcriptional regulatory protein, C terminal CH58_13 SM00257 Lysin motif CH58_1302 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase CH58_1307 SM00089 Repeats in polycystic kidney disease 1 (PKD1) and other proteins CH58_1317 SM00900 CH58_1317 CH58_1326 SM00710 Parallel beta-helix repeats CH58_1326 SM00912 haemagglutination activity domain CH58_1331 SM00382 ATPases associated with a variety of cellular activities CH58_1333 SM00382 ATPases associated with a variety of cellular activities CH58_1336 SM00062 Bacterial periplasmic substrate-binding proteins CH58_1344 SM00347 helix_turn_helix multiple antibiotic resistance protein CH58_1347 SM00967 RNA 2'-O ribose methyltransferase substrate binding CH58_1349 SM01144 CH58_1349 CH58_1350 SM00881 CoA binding domain CH58_1351 SM00155 Phospholipase D. Active site motifs. CH58_1359 SM00382 ATPases associated with a variety of cellular activities CH58_1359 SM01086 C-terminal, D2-small domain, of ClpB protein CH58_136 SM00749 bacterial OsmY and nodulation domain CH58_1361 SM00363 S4 RNA-binding domain CH58_1365 SM01321 CH58_1365 CH58_1366 SM00830 Chorismate mutase type II CH58_1369 SM00382 ATPases associated with a variety of cellular activities CH58_1381 SM00257 Lysin motif CH58_1383 SM00533 DNA-binding domain of DNA mismatch repair MUTS family CH58_1383 SM00534 ATPase domain of DNA mismatch repair MUTS family CH58_1385 SM00829 Enoylreductase CH58_1388 SM01120 CH58_1388 CH58_1391 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor CH58_1394 SM00062 Bacterial periplasmic substrate-binding proteins CH58_1395 SM01235 CH58_1395 CH58_1407 SM00382 ATPases associated with a variety of cellular activities CH58_1408 SM01321 CH58_1408 CH58_1410 SM00420 helix_turn_helix, Deoxyribose operon repressor CH58_1410 SM01134 CH58_1410 CH58_1411 SM01007 Class II Aldolase and Adducin N-terminal domain CH58_1412 SM00926 Molybdopterin oxidoreductase Fe4S4 domain CH58_1421 SM00382 ATPases associated with a variety of cellular activities CH58_1424 SM00861 Transketolase, pyrimidine binding domain CH58_143 SM00481 DNA polymerase alpha chain like domain CH58_1430 SM00382 ATPases associated with a variety of cellular activities CH58_1432 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain CH58_1442 SM01321 CH58_1442 CH58_1443 SM01091 Transporter associated domain CH58_1445 SM00382 ATPases associated with a variety of cellular activities CH58_1445 SM00962 SRP54-type protein, GTPase domain CH58_1445 SM00963 SRP54-type protein, helical bundle domain CH58_145 SM00363 S4 RNA-binding domain CH58_1450 SM01321 CH58_1450 CH58_1455 SM00448 cheY-homologous receiver domain CH58_1455 SM00850 LytTr DNA-binding domain CH58_1457 SM00830 Chorismate mutase type II CH58_147 SM00822 CH58_147 CH58_1474 SM01192 CH58_1474 CH58_1474 SM01193 CH58_1474 CH58_1477 SM00954 Region found in RelA / SpoT proteins CH58_1478 SM00073 Histidine Phosphotransfer domain CH58_1478 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CH58_1478 SM00387 Histidine kinase-like ATPases CH58_1478 SM00388 His Kinase A (phosphoacceptor) domain CH58_1478 SM00448 cheY-homologous receiver domain CH58_1479 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. CH58_1480 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CH58_1489 SM00382 ATPases associated with a variety of cellular activities CH58_1491 SM00487 DEAD-like helicases superfamily CH58_1491 SM00490 helicase superfamily c-terminal domain CH58_1491 SM00847 Helicase associated domain (HA2) Add an annotation CH58_1504 SM00382 ATPases associated with a variety of cellular activities CH58_1505 SM00947 Carbonic anhydrase CH58_151 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain CH58_151 SM00437 Bacterial DNA topoisomerase I DNA-binding domain CH58_151 SM00493 CH58_151 CH58_1514 SM01321 CH58_1514 CH58_1518 SM00345 helix_turn_helix gluconate operon transcriptional repressor CH58_1518 SM00895 CH58_1518 CH58_1521 SM00644 CH58_1521 CH58_1526 SM01240 CH58_1526 CH58_1531 SM00382 ATPases associated with a variety of cellular activities CH58_1549 SM00382 ATPases associated with a variety of cellular activities CH58_1550 SM00382 ATPases associated with a variety of cellular activities CH58_1554 SM00345 helix_turn_helix gluconate operon transcriptional repressor CH58_1554 SM00866 CH58_1554 CH58_1559 SM00382 ATPases associated with a variety of cellular activities CH58_156 SM00014 Acid phosphatase homologues CH58_1560 SM00382 ATPases associated with a variety of cellular activities CH58_1562 SM00072 Guanylate kinase homologues. CH58_1563 SM00849 Metallo-beta-lactamase superfamily CH58_1564 SM00859 Semialdehyde dehydrogenase, NAD binding domain CH58_1567 SM00382 ATPases associated with a variety of cellular activities CH58_158 SM00028 Tetratricopeptide repeats CH58_1583 SM00530 Helix-turn-helix XRE-family like proteins CH58_1585 SM00487 DEAD-like helicases superfamily CH58_1585 SM00490 helicase superfamily c-terminal domain CH58_1586 SM00028 Tetratricopeptide repeats CH58_1587 SM00316 Ribosomal protein S1-like RNA-binding domain CH58_1587 SM00322 K homology RNA-binding domain CH58_160 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family CH58_1601 SM00642 Alpha-amylase domain CH58_1619 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CH58_1620 SM00382 ATPases associated with a variety of cellular activities CH58_1622 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CH58_1622 SM01358 CH58_1622 CH58_1625 SM00926 Molybdopterin oxidoreductase Fe4S4 domain CH58_163 SM01007 Class II Aldolase and Adducin N-terminal domain CH58_1656 SM00862 Transcriptional regulatory protein, C terminal CH58_1670 SM00858 CH58_1670 CH58_1674 SM00382 ATPases associated with a variety of cellular activities CH58_168 SM00357 Cold shock protein domain CH58_168 SM00955 CH58_168 CH58_1683 SM00382 ATPases associated with a variety of cellular activities CH58_1698 SM01321 CH58_1698 CH58_171 SM00478 endonuclease III CH58_171 SM00525 CH58_171 CH58_1717 SM00342 helix_turn_helix, arabinose operon control protein CH58_1723 SM00563 Phosphate acyltransferases CH58_1724 SM00434 DNA Topoisomerase IV CH58_1727 SM00387 Histidine kinase-like ATPases CH58_1727 SM00433 TopoisomeraseII CH58_173 SM00900 CH58_173 CH58_1743 SM01118 CH58_1743 CH58_1744 SM00287 Bacterial SH3 domain homologues CH58_1745 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CH58_1747 SM00905 Dihydroneopterin aldolase CH58_1748 SM01207 CH58_1748 CH58_175 SM00342 helix_turn_helix, arabinose operon control protein CH58_1751 SM00400 zinc finger CH58_1751 SM00493 CH58_1751 CH58_1751 SM00766 DNA primase DnaG DnaB-binding CH58_1760 SM00382 ATPases associated with a variety of cellular activities CH58_1780 SM01217 CH58_1780 CH58_1785 SM00354 helix_turn _helix lactose operon repressor CH58_1787 SM00382 ATPases associated with a variety of cellular activities CH58_1790 SM00869 Autotransporter beta-domain CH58_1795 SM00912 haemagglutination activity domain CH58_1797 SM00327 von Willebrand factor (vWF) type A domain CH58_1799 SM00327 von Willebrand factor (vWF) type A domain CH58_1800 SM00327 von Willebrand factor (vWF) type A domain CH58_1802 SM00220 Serine/Threonine protein kinases, catalytic domain CH58_1806 SM00869 Autotransporter beta-domain CH58_1811 SM01321 CH58_1811 CH58_1813 SM00858 CH58_1813 CH58_1818 SM00345 helix_turn_helix gluconate operon transcriptional repressor CH58_1818 SM00895 CH58_1818 CH58_183 SM00382 ATPases associated with a variety of cellular activities CH58_1831 SM00382 ATPases associated with a variety of cellular activities CH58_1844 SM00422 helix_turn_helix, mercury resistance CH58_1846 SM00662 RNA polymerases D CH58_1847 SM00363 S4 RNA-binding domain CH58_1847 SM01390 CH58_1847 CH58_1860 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. CH58_1861 SM01374 CH58_1861 CH58_1865 SM00322 K homology RNA-binding domain CH58_1868 SM01382 CH58_1868 CH58_1868 SM01383 CH58_1868 CH58_1872 SM01403 CH58_1872 CH58_1876 SM00382 ATPases associated with a variety of cellular activities CH58_1877 SM01321 CH58_1877 CH58_1879 SM00838 Elongation factor G C-terminus CH58_1879 SM00889 Elongation factor G, domain IV CH58_188 SM00382 ATPases associated with a variety of cellular activities CH58_1893 SM00382 ATPases associated with a variety of cellular activities CH58_1898 SM00382 ATPases associated with a variety of cellular activities CH58_1899 SM00062 Bacterial periplasmic substrate-binding proteins CH58_190 SM00342 helix_turn_helix, arabinose operon control protein CH58_1906 SM00100 Cyclic nucleotide-monophosphate binding domain CH58_1906 SM00419 helix_turn_helix, cAMP Regulatory protein CH58_1913 SM00354 helix_turn _helix lactose operon repressor CH58_1938 SM00363 S4 RNA-binding domain CH58_1941 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CH58_1941 SM00387 Histidine kinase-like ATPases CH58_1941 SM00388 His Kinase A (phosphoacceptor) domain CH58_1942 SM00448 cheY-homologous receiver domain CH58_1942 SM00862 Transcriptional regulatory protein, C terminal CH58_1944 SM00316 Ribosomal protein S1-like RNA-binding domain CH58_1944 SM00732 Likely ribonuclease with RNase H fold. CH58_1945 SM00899 CH58_1945 CH58_1955 SM00421 helix_turn_helix, Lux Regulon CH58_1956 SM00450 Rhodanese Homology Domain CH58_1958 SM00420 helix_turn_helix, Deoxyribose operon repressor CH58_1958 SM01134 CH58_1958 CH58_1960 SM00382 ATPases associated with a variety of cellular activities CH58_1963 SM00052 Putative diguanylate phosphodiesterase CH58_1963 SM00091 PAS domain CH58_1963 SM00267 diguanylate cyclase CH58_1969 SM00869 Autotransporter beta-domain CH58_1970 SM00364 Leucine-rich repeats, bacterial type CH58_1971 SM00364 Leucine-rich repeats, bacterial type CH58_1973 SM01321 CH58_1973 CH58_1974 SM00364 Leucine-rich repeats, bacterial type CH58_1974 SM00369 Leucine-rich repeats, typical (most populated) subfamily CH58_1978 SM00823 Phosphopantetheine attachment site CH58_1978 SM00825 Beta-ketoacyl synthase CH58_1993 SM00382 ATPases associated with a variety of cellular activities CH58_1999 SM00869 Autotransporter beta-domain CH58_2000 SM00869 Autotransporter beta-domain CH58_2007 SM00354 helix_turn _helix lactose operon repressor CH58_2017 SM00382 ATPases associated with a variety of cellular activities CH58_2017 SM01086 C-terminal, D2-small domain, of ClpB protein CH58_2028 SM00860 SMI1 / KNR4 family CH58_2031 SM00530 Helix-turn-helix XRE-family like proteins CH58_2039 SM00382 ATPases associated with a variety of cellular activities CH58_205 SM00382 ATPases associated with a variety of cellular activities CH58_2054 SM01321 CH58_2054 CH58_2061 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. CH58_2061 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. CH58_2062 SM01004 Delta-aminolevulinic acid dehydratase CH58_2064 SM00382 ATPases associated with a variety of cellular activities CH58_2069 SM00382 ATPases associated with a variety of cellular activities CH58_2070 SM01321 CH58_2070 CH58_2090 SM00448 cheY-homologous receiver domain CH58_2090 SM00862 Transcriptional regulatory protein, C terminal CH58_2091 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CH58_2091 SM00387 Histidine kinase-like ATPases CH58_2091 SM00388 His Kinase A (phosphoacceptor) domain CH58_2092 SM00342 helix_turn_helix, arabinose operon control protein CH58_2094 SM00971 Serine acetyltransferase, N-terminal CH58_2098 SM00450 Rhodanese Homology Domain CH58_2103 SM00829 Enoylreductase CH58_2111 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain CH58_2111 SM01232 CH58_2111 CH58_2122 SM00532 Ligase N family CH58_2123 SM00072 Guanylate kinase homologues. CH58_2124 SM01409 CH58_2124 CH58_2125 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CH58_2125 SM00954 Region found in RelA / SpoT proteins CH58_2127 SM00487 DEAD-like helicases superfamily CH58_2127 SM00490 helicase superfamily c-terminal domain CH58_2134 SM00382 ATPases associated with a variety of cellular activities CH58_2139 SM01230 CH58_2139 CH58_2140 SM01321 CH58_2140 CH58_2141 SM00091 PAS domain CH58_2141 SM00387 Histidine kinase-like ATPases CH58_2141 SM00388 His Kinase A (phosphoacceptor) domain CH58_2142 SM00382 ATPases associated with a variety of cellular activities CH58_2142 SM00448 cheY-homologous receiver domain CH58_2143 SM00729 Elongator protein 3, MiaB family, Radical SAM CH58_2146 SM01321 CH58_2146 CH58_2147 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs CH58_2147 SM00474 3'-5' exonuclease CH58_2147 SM00475 5'-3' exonuclease CH58_2147 SM00482 DNA polymerase A domain CH58_2159 SM00345 helix_turn_helix gluconate operon transcriptional repressor CH58_2159 SM00895 CH58_2159 CH58_2169 SM00382 ATPases associated with a variety of cellular activities CH58_2170 SM00327 von Willebrand factor (vWF) type A domain CH58_2172 SM00344 helix_turn_helix ASNC type CH58_2174 SM01228 CH58_2174 CH58_2183 SM00382 ATPases associated with a variety of cellular activities CH58_219 SM00098 Alkaline phosphatase homologues CH58_2190 SM00382 ATPases associated with a variety of cellular activities CH58_2193 SM00062 Bacterial periplasmic substrate-binding proteins CH58_2203 SM01234 CH58_2203 CH58_2207 SM00382 ATPases associated with a variety of cellular activities CH58_2207 SM00760 Bacterial dnaA protein helix-turn-helix domain CH58_2208 SM00480 DNA polymerase III beta subunit CH58_221 SM00100 Cyclic nucleotide-monophosphate binding domain CH58_221 SM00419 helix_turn_helix, cAMP Regulatory protein CH58_2210 SM00387 Histidine kinase-like ATPases CH58_2210 SM00433 TopoisomeraseII CH58_2225 SM00382 ATPases associated with a variety of cellular activities CH58_2227 SM00342 helix_turn_helix, arabinose operon control protein CH58_2234 SM00530 Helix-turn-helix XRE-family like proteins CH58_2236 SM00382 ATPases associated with a variety of cellular activities CH58_224 SM01002 Alanine dehydrogenase/PNT, C-terminal domain CH58_224 SM01003 Alanine dehydrogenase/PNT, N-terminal domain CH58_2242 SM00382 ATPases associated with a variety of cellular activities CH58_2254 SM00421 helix_turn_helix, Lux Regulon CH58_2254 SM00448 cheY-homologous receiver domain CH58_2258 SM00382 ATPases associated with a variety of cellular activities CH58_2264 SM00271 DnaJ molecular chaperone homology domain CH58_2268 SM00650 Ribosomal RNA adenine dimethylases CH58_2272 SM01321 CH58_2272 CH58_2277 SM00851 MGS-like domain CH58_2277 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain CH58_2278 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain CH58_228 SM00448 cheY-homologous receiver domain CH58_228 SM00862 Transcriptional regulatory protein, C terminal CH58_2280 SM01321 CH58_2280 CH58_2285 SM00904 Riboflavin kinase CH58_2289 SM00271 DnaJ molecular chaperone homology domain CH58_229 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CH58_229 SM00387 Histidine kinase-like ATPases CH58_229 SM00388 His Kinase A (phosphoacceptor) domain CH58_2294 SM00852 Probable molybdopterin binding domain CH58_23 SM00487 DEAD-like helicases superfamily CH58_23 SM00491 CH58_23 CH58_2302 SM00448 cheY-homologous receiver domain CH58_2302 SM00862 Transcriptional regulatory protein, C terminal CH58_2305 SM00855 Phosphoglycerate mutase family CH58_2306 SM00342 helix_turn_helix, arabinose operon control protein CH58_2306 SM00871 Bacterial transcription activator, effector binding domain CH58_231 SM01321 CH58_231 CH58_2310 SM00831 Cation transporter/ATPase, N-terminus CH58_2312 SM00267 diguanylate cyclase CH58_2316 SM00382 ATPases associated with a variety of cellular activities CH58_2324 SM00421 helix_turn_helix, Lux Regulon CH58_2324 SM00448 cheY-homologous receiver domain CH58_2325 SM00387 Histidine kinase-like ATPases CH58_2325 SM00388 His Kinase A (phosphoacceptor) domain CH58_2325 SM00448 cheY-homologous receiver domain CH58_2329 SM00342 helix_turn_helix, arabinose operon control protein CH58_2337 SM00382 ATPases associated with a variety of cellular activities CH58_234 SM00867 YceI-like domain CH58_2350 SM00382 ATPases associated with a variety of cellular activities CH58_2357 SM00729 Elongator protein 3, MiaB family, Radical SAM CH58_237 SM00020 Trypsin-like serine protease CH58_2376 SM00060 Fibronectin type 3 domain CH58_2377 SM00869 Autotransporter beta-domain CH58_238 SM00530 Helix-turn-helix XRE-family like proteins CH58_2387 SM00829 Enoylreductase CH58_2388 SM00382 ATPases associated with a variety of cellular activities CH58_2389 SM01005 Alanine racemase, C-terminal domain CH58_2397 SM00382 ATPases associated with a variety of cellular activities CH58_2399 SM01007 Class II Aldolase and Adducin N-terminal domain CH58_2404 SM00342 helix_turn_helix, arabinose operon control protein CH58_2405 SM00342 helix_turn_helix, arabinose operon control protein CH58_2409 SM01276 CH58_2409 CH58_2414 SM00926 Molybdopterin oxidoreductase Fe4S4 domain CH58_2420 SM00883 Chaperonin 10 Kd subunit CH58_2424 SM00841 Elongation factor P, C-terminal CH58_2424 SM01185 CH58_2424 CH58_2434 SM00479 CH58_2434 CH58_2441 SM00257 Lysin motif CH58_2441 SM00646 CH58_2441 CH58_2442 SM00853 MutL C terminal dimerisation domain CH58_2442 SM01340 CH58_2442 CH58_2446 SM00244 prohibitin homologues CH58_2447 SM00244 prohibitin homologues CH58_2449 SM00788 Adenylosuccinate synthetase CH58_2451 SM00316 Ribosomal protein S1-like RNA-binding domain CH58_2451 SM00357 Cold shock protein domain CH58_2451 SM00955 CH58_2451 CH58_2452 SM00967 RNA 2'-O ribose methyltransferase substrate binding CH58_2456 SM00382 ATPases associated with a variety of cellular activities CH58_2458 SM00382 ATPases associated with a variety of cellular activities CH58_246 SM00382 ATPases associated with a variety of cellular activities CH58_246 SM00487 DEAD-like helicases superfamily CH58_246 SM00490 helicase superfamily c-terminal domain CH58_246 SM00847 Helicase associated domain (HA2) Add an annotation CH58_2473 SM00342 helix_turn_helix, arabinose operon control protein CH58_2479 SM01133 CH58_2479 CH58_2483 SM00382 ATPases associated with a variety of cellular activities CH58_2495 SM00267 diguanylate cyclase CH58_2502 SM00749 bacterial OsmY and nodulation domain CH58_2507 SM01133 CH58_2507 CH58_2509 SM00941 Pyrimidine nucleoside phosphorylase C-terminal domain CH58_2514 SM00382 ATPases associated with a variety of cellular activities CH58_2515 SM00530 Helix-turn-helix XRE-family like proteins CH58_2517 SM00382 ATPases associated with a variety of cellular activities CH58_2520 SM00382 ATPases associated with a variety of cellular activities CH58_2521 SM00387 Histidine kinase-like ATPases CH58_2524 SM01321 CH58_2524 CH58_2525 SM00912 haemagglutination activity domain CH58_2531 SM00382 ATPases associated with a variety of cellular activities CH58_2532 SM00382 ATPases associated with a variety of cellular activities CH58_2534 SM00052 Putative diguanylate phosphodiesterase CH58_2534 SM00267 diguanylate cyclase CH58_2543 SM00052 Putative diguanylate phosphodiesterase CH58_2547 SM00869 Autotransporter beta-domain CH58_2558 SM00235 Zinc-dependent metalloprotease CH58_2559 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase CH58_2562 SM01321 CH58_2562 CH58_2565 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CH58_2565 SM00387 Histidine kinase-like ATPases CH58_2565 SM00388 His Kinase A (phosphoacceptor) domain CH58_2565 SM00448 cheY-homologous receiver domain CH58_2566 SM00382 ATPases associated with a variety of cellular activities CH58_2572 SM00448 cheY-homologous receiver domain CH58_2572 SM00862 Transcriptional regulatory protein, C terminal CH58_2575 SM00354 helix_turn _helix lactose operon repressor CH58_258 SM00890 Domain of unknown function CH58_2582 SM00859 Semialdehyde dehydrogenase, NAD binding domain CH58_2588 SM00257 Lysin motif CH58_2588 SM00634 Bacterial Ig-like domain (group 1) CH58_2590 SM00642 Alpha-amylase domain CH58_2591 SM00642 Alpha-amylase domain CH58_2610 SM00749 bacterial OsmY and nodulation domain CH58_2613 SM00073 Histidine Phosphotransfer domain CH58_2613 SM00091 PAS domain CH58_2613 SM00387 Histidine kinase-like ATPases CH58_2613 SM00388 His Kinase A (phosphoacceptor) domain CH58_2613 SM00448 cheY-homologous receiver domain CH58_2614 SM00729 Elongator protein 3, MiaB family, Radical SAM CH58_262 SM00422 helix_turn_helix, mercury resistance CH58_2624 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. CH58_2625 SM01321 CH58_2625 CH58_2626 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. CH58_2633 SM00382 ATPases associated with a variety of cellular activities CH58_2635 SM00116 Domain in cystathionine beta-synthase and other proteins. CH58_2639 SM00382 ATPases associated with a variety of cellular activities CH58_2649 SM00354 helix_turn _helix lactose operon repressor CH58_2651 SM00642 Alpha-amylase domain CH58_266 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain CH58_2679 SM00316 Ribosomal protein S1-like RNA-binding domain CH58_268 SM01321 CH58_268 CH58_2684 SM00052 Putative diguanylate phosphodiesterase CH58_2684 SM00267 diguanylate cyclase CH58_2685 SM00829 Enoylreductase CH58_269 SM00091 PAS domain CH58_269 SM00382 ATPases associated with a variety of cellular activities CH58_2690 SM00878 Biotin carboxylase C-terminal domain CH58_2698 SM00345 helix_turn_helix gluconate operon transcriptional repressor CH58_2698 SM00895 CH58_2698 CH58_27 SM00341 Helicase and RNase D C-terminal CH58_27 SM00474 3'-5' exonuclease CH58_2702 SM00849 Metallo-beta-lactamase superfamily CH58_2704 SM00357 Cold shock protein domain CH58_2705 SM00357 Cold shock protein domain CH58_2706 SM01321 CH58_2706 CH58_271 SM00953 CH58_271 CH58_2714 SM00382 ATPases associated with a variety of cellular activities CH58_2721 SM00382 ATPases associated with a variety of cellular activities CH58_2724 SM00062 Bacterial periplasmic substrate-binding proteins CH58_2726 SM01133 CH58_2726 CH58_2729 SM00342 helix_turn_helix, arabinose operon control protein CH58_2733 SM00382 ATPases associated with a variety of cellular activities CH58_2740 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. CH58_2740 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. CH58_2741 SM00649 Ribosomal protein L11/L12 CH58_2746 SM00663 RNA polymerase I subunit A N-terminus CH58_2747 SM01321 CH58_2747 CH58_2748 SM00876 Biotin and Thiamin Synthesis associated domain CH58_2760 SM00411 bacterial (prokaryotic) histone like domain CH58_2762 SM01209 CH58_2762 CH58_2762 SM01210 CH58_2762 CH58_2763 SM00798 AICARFT/IMPCHase bienzyme CH58_2763 SM00851 MGS-like domain CH58_2773 SM00382 ATPases associated with a variety of cellular activities CH58_278 SM00382 ATPases associated with a variety of cellular activities CH58_2781 SM00382 ATPases associated with a variety of cellular activities CH58_2781 SM01086 C-terminal, D2-small domain, of ClpB protein CH58_279 SM01321 CH58_279 CH58_2793 SM00487 DEAD-like helicases superfamily CH58_2793 SM00490 helicase superfamily c-terminal domain CH58_2794 SM00486 DNA polymerase type-B family CH58_2796 SM00382 ATPases associated with a variety of cellular activities CH58_2802 SM00382 ATPases associated with a variety of cellular activities CH58_2807 SM01329 CH58_2807 CH58_2808 SM00917 LeuA allosteric (dimerisation) domain CH58_2809 SM01321 CH58_2809 CH58_2815 SM01321 CH58_2815 CH58_2816 SM00354 helix_turn _helix lactose operon repressor CH58_283 SM00382 ATPases associated with a variety of cellular activities CH58_2831 SM00842 Cell division protein FtsA CH58_2832 SM00864 Tubulin/FtsZ family, GTPase domain CH58_2832 SM00865 Tubulin/FtsZ family, C-terminal domain CH58_2836 SM00957 SecA DEAD-like domain CH58_2836 SM00958 SecA preprotein cross-linking domain CH58_2838 SM00382 ATPases associated with a variety of cellular activities CH58_284 SM00382 ATPases associated with a variety of cellular activities CH58_2854 SM00346 helix_turn_helix isocitrate lyase regulation CH58_2855 SM01018 B12 binding domain CH58_2856 SM00912 haemagglutination activity domain CH58_2866 SM00382 ATPases associated with a variety of cellular activities CH58_2877 SM01387 CH58_2877 CH58_2881 SM00316 Ribosomal protein S1-like RNA-binding domain CH58_2881 SM00322 K homology RNA-binding domain CH58_2888 SM00382 ATPases associated with a variety of cellular activities CH58_2890 SM01103 CH58_2890 CH58_2893 SM00448 cheY-homologous receiver domain CH58_2893 SM00862 Transcriptional regulatory protein, C terminal CH58_2894 SM00387 Histidine kinase-like ATPases CH58_2894 SM00388 His Kinase A (phosphoacceptor) domain CH58_291 SM00363 S4 RNA-binding domain CH58_2912 SM00116 Domain in cystathionine beta-synthase and other proteins. CH58_2912 SM01091 Transporter associated domain CH58_2921 SM01321 CH58_2921 CH58_2928 SM00382 ATPases associated with a variety of cellular activities CH58_2932 SM00859 Semialdehyde dehydrogenase, NAD binding domain CH58_2938 SM00382 ATPases associated with a variety of cellular activities CH58_2957 SM00382 ATPases associated with a variety of cellular activities CH58_296 SM00347 helix_turn_helix multiple antibiotic resistance protein CH58_2962 SM00382 ATPases associated with a variety of cellular activities CH58_2978 SM00507 HNH nucleases CH58_2991 SM00487 DEAD-like helicases superfamily CH58_2991 SM00490 helicase superfamily c-terminal domain CH58_2993 SM00357 Cold shock protein domain CH58_2993 SM00382 ATPases associated with a variety of cellular activities CH58_2993 SM00959 Rho termination factor, N-terminal domain CH58_2997 SM00984 UDP binding domain CH58_3013 SM00382 ATPases associated with a variety of cellular activities CH58_3014 SM01321 CH58_3014 CH58_3020 SM01219 CH58_3020 CH58_3034 SM00341 Helicase and RNase D C-terminal CH58_3034 SM00487 DEAD-like helicases superfamily CH58_3034 SM00490 helicase superfamily c-terminal domain CH58_3034 SM00956 CH58_3034 CH58_304 SM00479 CH58_304 CH58_3053 SM00382 ATPases associated with a variety of cellular activities CH58_3053 SM00962 SRP54-type protein, GTPase domain CH58_3053 SM00963 SRP54-type protein, helical bundle domain CH58_3054 SM00382 ATPases associated with a variety of cellular activities CH58_3057 SM01321 CH58_3057 CH58_3060 SM00382 ATPases associated with a variety of cellular activities CH58_3064 SM00382 ATPases associated with a variety of cellular activities CH58_3065 SM00382 ATPases associated with a variety of cellular activities CH58_3076 SM00382 ATPases associated with a variety of cellular activities CH58_3096 SM00382 ATPases associated with a variety of cellular activities CH58_310 SM00354 helix_turn _helix lactose operon repressor CH58_3100 SM00382 ATPases associated with a variety of cellular activities CH58_3100 SM01086 C-terminal, D2-small domain, of ClpB protein CH58_3103 SM00354 helix_turn _helix lactose operon repressor CH58_3105 SM00487 DEAD-like helicases superfamily CH58_3105 SM00490 helicase superfamily c-terminal domain CH58_3119 SM01006 Siderophore biosynthesis protein domain CH58_3126 SM00421 helix_turn_helix, Lux Regulon CH58_3139 SM00382 ATPases associated with a variety of cellular activities CH58_3139 SM01086 C-terminal, D2-small domain, of ClpB protein CH58_3153 SM00382 ATPases associated with a variety of cellular activities CH58_3159 SM00478 endonuclease III CH58_3159 SM00525 CH58_3159 CH58_3167 SM00729 Elongator protein 3, MiaB family, Radical SAM CH58_3169 SM01152 CH58_3169 CH58_3173 SM00382 ATPases associated with a variety of cellular activities CH58_3176 SM00732 Likely ribonuclease with RNase H fold. CH58_3181 SM00731 SprT homologues. CH58_3185 SM01321 CH58_3185 CH58_3188 SM00861 Transketolase, pyrimidine binding domain CH58_3190 SM01321 CH58_3190 CH58_3191 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain CH58_3196 SM00382 ATPases associated with a variety of cellular activities CH58_320 SM01321 CH58_320 CH58_3205 SM01011 Aminopeptidase P, N-terminal domain CH58_3219 SM00448 cheY-homologous receiver domain CH58_3219 SM00862 Transcriptional regulatory protein, C terminal CH58_322 SM00382 ATPases associated with a variety of cellular activities CH58_3220 SM00387 Histidine kinase-like ATPases CH58_3220 SM00388 His Kinase A (phosphoacceptor) domain CH58_3226 SM00937 CH58_3226 CH58_3230 SM00382 ATPases associated with a variety of cellular activities CH58_3235 SM00530 Helix-turn-helix XRE-family like proteins CH58_3237 SM00530 Helix-turn-helix XRE-family like proteins CH58_3238 SM00778 Zinc-binding domain of primase-helicase CH58_3238 SM00885 D5 N terminal like CH58_3259 SM00382 ATPases associated with a variety of cellular activities CH58_3260 SM00382 ATPases associated with a variety of cellular activities CH58_3268 SM00354 helix_turn _helix lactose operon repressor CH58_327 SM00382 ATPases associated with a variety of cellular activities CH58_3271 SM00354 helix_turn _helix lactose operon repressor CH58_3287 SM00420 helix_turn_helix, Deoxyribose operon repressor CH58_3287 SM01134 CH58_3287 CH58_3291 SM00382 ATPases associated with a variety of cellular activities CH58_3293 SM00869 Autotransporter beta-domain CH58_3296 SM00947 Carbonic anhydrase CH58_3300 SM00382 ATPases associated with a variety of cellular activities CH58_3316 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CH58_3316 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CH58_3316 SM00319 Homologues of the ligand binding domain of Tar CH58_3317 SM00849 Metallo-beta-lactamase superfamily CH58_3321 SM00354 helix_turn _helix lactose operon repressor CH58_3324 SM00563 Phosphate acyltransferases CH58_3329 SM00927 DNA mismatch repair enzyme MutH CH58_3331 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. CH58_3344 SM00646 CH58_3344 CH58_3347 SM00925 MltA specific insert domain CH58_3357 SM00382 ATPases associated with a variety of cellular activities CH58_3358 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs CH58_3358 SM00475 5'-3' exonuclease CH58_3362 SM01321 CH58_3362 CH58_3368 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CH58_3373 SM01321 CH58_3373 CH58_3379 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. CH58_3381 SM00935 Outer membrane protein (OmpH-like) CH58_3387 SM00481 DNA polymerase alpha chain like domain CH58_3390 SM00977 TilS substrate C-terminal domain CH58_3394 SM01322 CH58_3394 CH58_3402 SM00382 ATPases associated with a variety of cellular activities CH58_3402 SM00930 CH58_3402 CH58_3412 SM00257 Lysin motif CH58_3413 SM00849 Metallo-beta-lactamase superfamily CH58_3416 SM00479 CH58_3416 CH58_3421 SM00382 ATPases associated with a variety of cellular activities CH58_3429 SM00778 Zinc-binding domain of primase-helicase CH58_3436 SM01321 CH58_3436 CH58_3449 SM00861 Transketolase, pyrimidine binding domain CH58_3452 SM00881 CoA binding domain CH58_347 SM00382 ATPases associated with a variety of cellular activities CH58_3472 SM00382 ATPases associated with a variety of cellular activities CH58_3474 SM00936 Penicillin-binding protein 5, C-terminal domain CH58_3476 SM00420 helix_turn_helix, Deoxyribose operon repressor CH58_3476 SM01134 CH58_3476 CH58_3477 SM01133 CH58_3477 CH58_3478 SM00014 Acid phosphatase homologues CH58_3485 SM00382 ATPases associated with a variety of cellular activities CH58_3490 SM00062 Bacterial periplasmic substrate-binding proteins CH58_3490 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. CH58_3492 SM00244 prohibitin homologues CH58_3496 SM00382 ATPases associated with a variety of cellular activities CH58_3502 SM00062 Bacterial periplasmic substrate-binding proteins CH58_3502 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. CH58_3503 SM00382 ATPases associated with a variety of cellular activities CH58_3504 SM00830 Chorismate mutase type II CH58_351 SM00411 bacterial (prokaryotic) histone like domain CH58_3516 SM00382 ATPases associated with a variety of cellular activities CH58_3517 SM00357 Cold shock protein domain CH58_3519 SM00382 ATPases associated with a variety of cellular activities CH58_3519 SM01086 C-terminal, D2-small domain, of ClpB protein CH58_352 SM00873 B3/4 domain CH58_352 SM00874 tRNA synthetase B5 domain CH58_352 SM00896 Ferredoxin-fold anticodon binding domain CH58_3520 SM01321 CH58_3520 CH58_3521 SM00316 Ribosomal protein S1-like RNA-binding domain CH58_3523 SM00382 ATPases associated with a variety of cellular activities CH58_3524 SM00382 ATPases associated with a variety of cellular activities CH58_3526 SM00344 helix_turn_helix ASNC type CH58_3527 SM00843 CH58_3527 CH58_3530 SM00382 ATPases associated with a variety of cellular activities CH58_3539 SM00870 CH58_3539 CH58_3545 SM00316 Ribosomal protein S1-like RNA-binding domain CH58_3547 SM00411 bacterial (prokaryotic) histone like domain CH58_3548 SM00849 Metallo-beta-lactamase superfamily CH58_3549 SM00382 ATPases associated with a variety of cellular activities CH58_3551 SM01150 CH58_3551 CH58_3552 SM00382 ATPases associated with a variety of cellular activities CH58_3554 SM01150 CH58_3554 CH58_3555 SM00357 Cold shock protein domain CH58_3563 SM01321 CH58_3563 CH58_3566 SM00849 Metallo-beta-lactamase superfamily CH58_357 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain CH58_3575 SM00981 CH58_3575 CH58_3576 SM00382 ATPases associated with a variety of cellular activities CH58_3580 SM01321 CH58_3580 CH58_3581 SM00825 Beta-ketoacyl synthase CH58_3590 SM01321 CH58_3590 CH58_3597 SM00851 MGS-like domain CH58_3599 SM00881 CoA binding domain CH58_3600 SM00992 Hemimethylated DNA-binding protein YccV like CH58_3601 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase CH58_3613 SM00825 Beta-ketoacyl synthase CH58_3621 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. CH58_3625 SM00382 ATPases associated with a variety of cellular activities CH58_363 SM00382 ATPases associated with a variety of cellular activities CH58_3633 SM00382 ATPases associated with a variety of cellular activities CH58_3633 SM01086 C-terminal, D2-small domain, of ClpB protein CH58_3653 SM00382 ATPases associated with a variety of cellular activities CH58_3657 SM00852 Probable molybdopterin binding domain CH58_3659 SM00382 ATPases associated with a variety of cellular activities CH58_3664 SM00829 Enoylreductase CH58_3670 SM00382 ATPases associated with a variety of cellular activities CH58_3673 SM00919 Malic enzyme, NAD binding domain CH58_3673 SM01274 CH58_3673 CH58_3681 SM01321 CH58_3681 CH58_3687 SM01091 Transporter associated domain CH58_3691 SM01006 Siderophore biosynthesis protein domain CH58_3693 SM00382 ATPases associated with a variety of cellular activities CH58_3702 SM01350 CH58_3702 CH58_3714 SM00382 ATPases associated with a variety of cellular activities CH58_3715 SM00382 ATPases associated with a variety of cellular activities CH58_3722 SM00634 Bacterial Ig-like domain (group 1) CH58_3728 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain CH58_3738 SM00421 helix_turn_helix, Lux Regulon CH58_3738 SM00448 cheY-homologous receiver domain CH58_3749 SM00490 helicase superfamily c-terminal domain CH58_375 SM00382 ATPases associated with a variety of cellular activities CH58_3750 SM01321 CH58_3750 CH58_3756 SM01118 CH58_3756 CH58_3757 SM00507 HNH nucleases CH58_3760 SM00382 ATPases associated with a variety of cellular activities CH58_3769 SM00382 ATPases associated with a variety of cellular activities CH58_3772 SM00450 Rhodanese Homology Domain CH58_3776 SM00382 ATPases associated with a variety of cellular activities CH58_3784 SM00382 ATPases associated with a variety of cellular activities CH58_3787 SM00487 DEAD-like helicases superfamily CH58_3787 SM00488 CH58_3787 CH58_3787 SM00491 CH58_3787 CH58_3788 SM01060 CH58_3788 CH58_3791 SM00852 Probable molybdopterin binding domain CH58_3797 SM00434 DNA Topoisomerase IV CH58_3798 SM00387 Histidine kinase-like ATPases CH58_3798 SM00388 His Kinase A (phosphoacceptor) domain CH58_3798 SM00448 cheY-homologous receiver domain CH58_3799 SM00421 helix_turn_helix, Lux Regulon CH58_3799 SM00448 cheY-homologous receiver domain CH58_38 SM00382 ATPases associated with a variety of cellular activities CH58_381 SM00382 ATPases associated with a variety of cellular activities CH58_3810 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CH58_3810 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CH58_3813 SM00530 Helix-turn-helix XRE-family like proteins CH58_3816 SM01007 Class II Aldolase and Adducin N-terminal domain CH58_3817 SM00420 helix_turn_helix, Deoxyribose operon repressor CH58_3817 SM01134 CH58_3817 CH58_3851 SM01321 CH58_3851 CH58_3853 SM00487 DEAD-like helicases superfamily CH58_3853 SM00490 helicase superfamily c-terminal domain CH58_3854 SM00363 S4 RNA-binding domain CH58_3857 SM00382 ATPases associated with a variety of cellular activities CH58_386 SM00644 CH58_386 CH58_3861 SM00052 Putative diguanylate phosphodiesterase CH58_3864 SM00014 Acid phosphatase homologues CH58_3865 SM00833 Cobalamin synthesis protein cobW C-terminal domain CH58_3867 SM00345 helix_turn_helix gluconate operon transcriptional repressor CH58_3867 SM00895 CH58_3867 CH58_387 SM00346 helix_turn_helix isocitrate lyase regulation CH58_3870 SM00841 Elongation factor P, C-terminal CH58_3870 SM01185 CH58_3870 CH58_3882 SM00382 ATPases associated with a variety of cellular activities CH58_3888 SM00862 Transcriptional regulatory protein, C terminal CH58_3893 SM00518 AP endonuclease family 2 CH58_3900 SM00382 ATPases associated with a variety of cellular activities CH58_3907 SM00382 ATPases associated with a variety of cellular activities CH58_3907 SM00930 CH58_3907 CH58_3910 SM00382 ATPases associated with a variety of cellular activities CH58_3913 SM00855 Phosphoglycerate mutase family CH58_3922 SM00382 ATPases associated with a variety of cellular activities CH58_3927 SM00382 ATPases associated with a variety of cellular activities CH58_3931 SM00729 Elongator protein 3, MiaB family, Radical SAM CH58_3931 SM00876 Biotin and Thiamin Synthesis associated domain CH58_3935 SM00382 ATPases associated with a variety of cellular activities CH58_3936 SM00487 DEAD-like helicases superfamily CH58_3936 SM00490 helicase superfamily c-terminal domain CH58_3940 SM00729 Elongator protein 3, MiaB family, Radical SAM CH58_3945 SM01321 CH58_3945 CH58_3954 SM01321 CH58_3954 CH58_3957 SM00091 PAS domain CH58_3957 SM00387 Histidine kinase-like ATPases CH58_3957 SM00388 His Kinase A (phosphoacceptor) domain CH58_3958 SM00382 ATPases associated with a variety of cellular activities CH58_3958 SM00448 cheY-homologous receiver domain CH58_3964 SM00382 ATPases associated with a variety of cellular activities CH58_3967 SM00487 DEAD-like helicases superfamily CH58_3967 SM00490 helicase superfamily c-terminal domain CH58_3975 SM00354 helix_turn _helix lactose operon repressor CH58_3978 SM00382 ATPases associated with a variety of cellular activities CH58_398 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. CH58_398 SM00245 tail specific protease CH58_3983 SM00090 RIO-like kinase CH58_3984 SM00382 ATPases associated with a variety of cellular activities CH58_3986 SM00342 helix_turn_helix, arabinose operon control protein CH58_399 SM00945 ProQ/FINO family CH58_3995 SM00357 Cold shock protein domain CH58_3999 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) CH58_3999 SM00091 PAS domain CH58_3999 SM00267 diguanylate cyclase CH58_4006 SM01091 Transporter associated domain CH58_4007 SM00347 helix_turn_helix multiple antibiotic resistance protein CH58_4018 SM00903 Flavin reductase like domain CH58_4024 SM00487 DEAD-like helicases superfamily CH58_4024 SM00490 helicase superfamily c-terminal domain CH58_4026 SM01022 CH58_4026 CH58_403 SM00972 Spore Coat Protein U domain CH58_4031 SM00382 ATPases associated with a variety of cellular activities CH58_404 SM00972 Spore Coat Protein U domain CH58_4044 SM01321 CH58_4044 CH58_4045 SM00634 Bacterial Ig-like domain (group 1) CH58_4048 SM00858 CH58_4048 CH58_405 SM00972 Spore Coat Protein U domain CH58_4057 SM00047 Lysozyme subfamily 2 CH58_4061 SM01007 Class II Aldolase and Adducin N-terminal domain CH58_4064 SM00382 ATPases associated with a variety of cellular activities CH58_4079 SM00382 ATPases associated with a variety of cellular activities CH58_408 SM00972 Spore Coat Protein U domain CH58_4086 SM00478 endonuclease III CH58_4089 SM00342 helix_turn_helix, arabinose operon control protein CH58_4097 SM00062 Bacterial periplasmic substrate-binding proteins CH58_4097 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. CH58_4099 SM00382 ATPases associated with a variety of cellular activities CH58_41 SM00635 Bacterial Ig-like domain 2 CH58_410 SM01022 CH58_410 CH58_4120 SM00421 helix_turn_helix, Lux Regulon CH58_4120 SM00448 cheY-homologous receiver domain CH58_4121 SM00278 Helix-hairpin-helix DNA-binding motif class 1 CH58_4121 SM00465 GIY-YIG type nucleases (URI domain) CH58_413 SM00382 ATPases associated with a variety of cellular activities CH58_4150 SM00345 helix_turn_helix gluconate operon transcriptional repressor CH58_4150 SM00866 CH58_4150 CH58_4155 SM00382 ATPases associated with a variety of cellular activities CH58_4161 SM00382 ATPases associated with a variety of cellular activities CH58_4172 SM00822 CH58_4172 CH58_4172 SM00823 Phosphopantetheine attachment site CH58_4172 SM00824 Thioesterase CH58_4172 SM00825 Beta-ketoacyl synthase CH58_4172 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. CH58_4173 SM00823 Phosphopantetheine attachment site CH58_4174 SM00342 helix_turn_helix, arabinose operon control protein CH58_4175 SM00382 ATPases associated with a variety of cellular activities CH58_4176 SM00382 ATPases associated with a variety of cellular activities CH58_4186 SM00062 Bacterial periplasmic substrate-binding proteins CH58_4186 SM00387 Histidine kinase-like ATPases CH58_4186 SM00388 His Kinase A (phosphoacceptor) domain CH58_4186 SM00448 cheY-homologous receiver domain CH58_4187 SM00421 helix_turn_helix, Lux Regulon CH58_4187 SM00448 cheY-homologous receiver domain CH58_419 SM01005 Alanine racemase, C-terminal domain CH58_4196 SM00382 ATPases associated with a variety of cellular activities CH58_4204 SM00420 helix_turn_helix, Deoxyribose operon repressor CH58_4204 SM01134 CH58_4204 CH58_4212 SM00382 ATPases associated with a variety of cellular activities CH58_4225 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CH58_4225 SM00387 Histidine kinase-like ATPases CH58_4226 SM00345 helix_turn_helix gluconate operon transcriptional repressor CH58_4235 SM00382 ATPases associated with a variety of cellular activities CH58_4239 SM00345 helix_turn_helix gluconate operon transcriptional repressor CH58_4239 SM00866 CH58_4239 CH58_424 SM00644 CH58_424 CH58_4255 SM00671 Sel1-like repeats. CH58_4257 SM00671 Sel1-like repeats. CH58_426 SM00448 cheY-homologous receiver domain CH58_4268 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CH58_4268 SM00387 Histidine kinase-like ATPases CH58_4268 SM00388 His Kinase A (phosphoacceptor) domain CH58_4269 SM00448 cheY-homologous receiver domain CH58_4269 SM00862 Transcriptional regulatory protein, C terminal CH58_427 SM00448 cheY-homologous receiver domain CH58_4276 SM00450 Rhodanese Homology Domain CH58_428 SM00138 Methyltransferase, chemotaxis proteins CH58_4282 SM01400 CH58_4282 CH58_4286 SM00937 CH58_4286 CH58_429 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CH58_429 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CH58_429 SM00319 Homologues of the ligand binding domain of Tar CH58_4292 SM00382 ATPases associated with a variety of cellular activities CH58_430 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CH58_430 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CH58_430 SM00319 Homologues of the ligand binding domain of Tar CH58_4301 SM01321 CH58_4301 CH58_4306 SM00481 DNA polymerase alpha chain like domain CH58_4314 SM00912 haemagglutination activity domain CH58_4315 SM00836 DALR anticodon binding domain CH58_4315 SM01016 Arginyl tRNA synthetase N terminal dom CH58_4323 SM00481 DNA polymerase alpha chain like domain CH58_433 SM00869 Autotransporter beta-domain CH58_4335 SM00342 helix_turn_helix, arabinose operon control protein CH58_4339 SM00155 Phospholipase D. Active site motifs. CH58_4343 SM00857 Resolvase, N terminal domain CH58_4347 SM00470 ParB-like nuclease domain CH58_4348 SM00382 ATPases associated with a variety of cellular activities CH58_4357 SM00470 ParB-like nuclease domain CH58_4359 SM00382 ATPases associated with a variety of cellular activities CH58_4366 SM00232 JAB/MPN domain CH58_4373 SM00635 Bacterial Ig-like domain 2 CH58_4379 SM00635 Bacterial Ig-like domain 2 CH58_438 SM00260 Two component signalling adaptor domain CH58_4388 SM00382 ATPases associated with a variety of cellular activities CH58_4389 SM00470 ParB-like nuclease domain CH58_439 SM00073 Histidine Phosphotransfer domain CH58_439 SM00260 Two component signalling adaptor domain CH58_439 SM00387 Histidine kinase-like ATPases CH58_439 SM01231 CH58_439 CH58_4390 SM00470 ParB-like nuclease domain CH58_4391 SM00487 DEAD-like helicases superfamily CH58_4391 SM00490 helicase superfamily c-terminal domain CH58_4397 SM01321 CH58_4397 CH58_4403 SM00062 Bacterial periplasmic substrate-binding proteins CH58_4412 SM00382 ATPases associated with a variety of cellular activities CH58_4414 SM00244 prohibitin homologues CH58_4418 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs CH58_4418 SM00475 5'-3' exonuclease CH58_4437 SM00382 ATPases associated with a variety of cellular activities CH58_444 SM00831 Cation transporter/ATPase, N-terminus CH58_4442 SM00194 Protein tyrosine phosphatase, catalytic domain CH58_4442 SM00404 Protein tyrosine phosphatase, catalytic domain motif CH58_4445 SM00220 Serine/Threonine protein kinases, catalytic domain CH58_446 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CH58_446 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CH58_446 SM00319 Homologues of the ligand binding domain of Tar CH58_4464 SM00857 Resolvase, N terminal domain CH58_4478 SM00470 ParB-like nuclease domain CH58_449 SM00357 Cold shock protein domain CH58_4490 SM00364 Leucine-rich repeats, bacterial type CH58_4503 SM00382 ATPases associated with a variety of cellular activities CH58_4511 SM00382 ATPases associated with a variety of cellular activities CH58_4514 SM00530 Helix-turn-helix XRE-family like proteins CH58_453 SM01038 Beta galactosidase small chain CH58_454 SM00829 Enoylreductase CH58_456 SM00344 helix_turn_helix ASNC type CH58_463 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) CH58_463 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CH58_465 SM00354 helix_turn _helix lactose operon repressor CH58_466 SM01329 CH58_466 CH58_47 SM00635 Bacterial Ig-like domain 2 CH58_473 SM00448 cheY-homologous receiver domain CH58_473 SM00862 Transcriptional regulatory protein, C terminal CH58_474 SM00387 Histidine kinase-like ATPases CH58_474 SM00388 His Kinase A (phosphoacceptor) domain CH58_475 SM00558 A domain family that is part of the cupin metalloenzyme superfamily. CH58_480 SM00382 ATPases associated with a variety of cellular activities CH58_482 SM00487 DEAD-like helicases superfamily CH58_482 SM00490 helicase superfamily c-terminal domain CH58_482 SM00982 CH58_482 CH58_482 SM01058 CarD-like/TRCF domain CH58_495 SM00382 ATPases associated with a variety of cellular activities CH58_497 SM01321 CH58_497 CH58_504 SM01321 CH58_504 CH58_505 SM00825 Beta-ketoacyl synthase CH58_507 SM00822 CH58_507 CH58_508 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. CH58_51 SM01321 CH58_51 CH58_514 SM01321 CH58_514 CH58_515 SM00363 S4 RNA-binding domain CH58_516 SM00316 Ribosomal protein S1-like RNA-binding domain CH58_53 SM00232 JAB/MPN domain CH58_534 SM00421 helix_turn_helix, Lux Regulon CH58_555 SM00354 helix_turn _helix lactose operon repressor CH58_557 SM00382 ATPases associated with a variety of cellular activities CH58_565 SM00912 haemagglutination activity domain CH58_57 SM01040 BRO family, N-terminal domain CH58_570 SM01329 CH58_570 CH58_572 SM00354 helix_turn _helix lactose operon repressor CH58_574 SM00382 ATPases associated with a variety of cellular activities CH58_582 SM00062 Bacterial periplasmic substrate-binding proteins CH58_582 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. CH58_584 SM00382 ATPases associated with a variety of cellular activities CH58_585 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) CH58_585 SM00091 PAS domain CH58_585 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CH58_587 SM00382 ATPases associated with a variety of cellular activities CH58_592 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain CH58_604 SM00354 helix_turn _helix lactose operon repressor CH58_617 SM00926 Molybdopterin oxidoreductase Fe4S4 domain CH58_617 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region CH58_618 SM00928 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region CH58_625 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CH58_63 SM00060 Fibronectin type 3 domain CH58_632 SM00354 helix_turn _helix lactose operon repressor CH58_641 SM00382 ATPases associated with a variety of cellular activities CH58_644 SM00062 Bacterial periplasmic substrate-binding proteins CH58_646 SM00382 ATPases associated with a variety of cellular activities CH58_655 SM00859 Semialdehyde dehydrogenase, NAD binding domain CH58_657 SM00342 helix_turn_helix, arabinose operon control protein CH58_662 SM00825 Beta-ketoacyl synthase CH58_670 SM00463 Small MutS-related domain CH58_671 SM00855 Phosphoglycerate mutase family CH58_685 SM00382 ATPases associated with a variety of cellular activities CH58_7 SM01321 CH58_7 CH58_715 SM00382 ATPases associated with a variety of cellular activities CH58_715 SM01086 C-terminal, D2-small domain, of ClpB protein CH58_724 SM00421 helix_turn_helix, Lux Regulon CH58_728 SM00382 ATPases associated with a variety of cellular activities CH58_732 SM00926 Molybdopterin oxidoreductase Fe4S4 domain CH58_74 SM00345 helix_turn_helix gluconate operon transcriptional repressor CH58_755 SM01321 CH58_755 CH58_760 SM00278 Helix-hairpin-helix DNA-binding motif class 1 CH58_760 SM00292 breast cancer carboxy-terminal domain CH58_760 SM00532 Ligase N family CH58_761 SM00771 ZipA, C-terminal domain (FtsZ-binding) CH58_767 SM01321 CH58_767 CH58_769 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CH58_769 SM00387 Histidine kinase-like ATPases CH58_769 SM00388 His Kinase A (phosphoacceptor) domain CH58_770 SM00448 cheY-homologous receiver domain CH58_770 SM00862 Transcriptional regulatory protein, C terminal CH58_772 SM00382 ATPases associated with a variety of cellular activities CH58_773 SM00450 Rhodanese Homology Domain CH58_779 SM00327 von Willebrand factor (vWF) type A domain CH58_780 SM00387 Histidine kinase-like ATPases CH58_780 SM00388 His Kinase A (phosphoacceptor) domain CH58_781 SM00448 cheY-homologous receiver domain CH58_781 SM00862 Transcriptional regulatory protein, C terminal CH58_784 SM00382 ATPases associated with a variety of cellular activities CH58_792 SM00364 Leucine-rich repeats, bacterial type CH58_794 SM01130 CH58_794 CH58_798 SM00869 Autotransporter beta-domain CH58_8 SM00278 Helix-hairpin-helix DNA-binding motif class 1 CH58_804 SM00919 Malic enzyme, NAD binding domain CH58_804 SM01274 CH58_804 CH58_812 SM00926 Molybdopterin oxidoreductase Fe4S4 domain CH58_815 SM00421 helix_turn_helix, Lux Regulon CH58_815 SM00448 cheY-homologous receiver domain CH58_82 SM00763 PrkA AAA domain CH58_822 SM00382 ATPases associated with a variety of cellular activities CH58_834 SM01321 CH58_834 CH58_836 SM01130 CH58_836 CH58_845 SM01321 CH58_845 CH58_85 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain CH58_852 SM00382 ATPases associated with a variety of cellular activities CH58_857 SM00924 MgtE intracellular N domain CH58_860 SM00382 ATPases associated with a variety of cellular activities CH58_865 SM00345 helix_turn_helix gluconate operon transcriptional repressor CH58_866 SM00382 ATPases associated with a variety of cellular activities CH58_871 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CH58_871 SM00388 His Kinase A (phosphoacceptor) domain CH58_872 SM00448 cheY-homologous receiver domain CH58_872 SM00862 Transcriptional regulatory protein, C terminal CH58_875 SM00046 Diacylglycerol kinase catalytic domain (presumed) CH58_889 SM01321 CH58_889 CH58_89 SM00870 CH58_89 CH58_891 SM00116 Domain in cystathionine beta-synthase and other proteins. CH58_891 SM01240 CH58_891 CH58_896 SM00564 beta-propeller repeat CH58_9 SM00382 ATPases associated with a variety of cellular activities CH58_900 SM00530 Helix-turn-helix XRE-family like proteins CH58_901 SM00028 Tetratricopeptide repeats CH58_903 SM00562 CH58_903 CH58_904 SM00247 Beta/gamma crystallins CH58_905 SM00869 Autotransporter beta-domain CH58_913 SM00271 DnaJ molecular chaperone homology domain CH58_929 SM00938 Nitrogen regulatory protein P-II CH58_93 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain CH58_93 SM00437 Bacterial DNA topoisomerase I DNA-binding domain CH58_93 SM00493 CH58_93 CH58_931 SM00382 ATPases associated with a variety of cellular activities CH58_931 SM00448 cheY-homologous receiver domain CH58_933 SM00387 Histidine kinase-like ATPases CH58_933 SM00388 His Kinase A (phosphoacceptor) domain CH58_934 SM01321 CH58_934 CH58_938 SM01211 CH58_938 CH58_939 SM00062 Bacterial periplasmic substrate-binding proteins CH58_945 SM01321 CH58_945 CH58_948 SM00382 ATPases associated with a variety of cellular activities CH58_953 SM00382 ATPases associated with a variety of cellular activities CH58_964 SM00357 Cold shock protein domain CH58_968 SM00382 ATPases associated with a variety of cellular activities CH58_969 SM00382 ATPases associated with a variety of cellular activities CH58_974 SM00988 UreE urease accessory protein, N-terminal domain CH58_987 SM00342 helix_turn_helix, arabinose operon control protein CH58_996 SM00448 cheY-homologous receiver domain CH58_996 SM00862 Transcriptional regulatory protein, C terminal CH58_997 SM00387 Histidine kinase-like ATPases CH58_997 SM00388 His Kinase A (phosphoacceptor) domain