locus-tag class description ISU54_00005 PF11638 DnaA N-terminal domain ISU54_00005 PF08299 Bacterial dnaA protein helix-turn-helix ISU54_00005 PF00308 Bacterial dnaA protein ISU54_00010 PF02767 DNA polymerase III beta subunit, central domain ISU54_00010 PF00712 DNA polymerase III beta subunit, N-terminal domain ISU54_00010 PF02768 DNA polymerase III beta subunit, C-terminal domain ISU54_00020 PF02463 RecF/RecN/SMC N terminal domain ISU54_00025 PF18053 DNA gyrase B subunit insert domain ISU54_00025 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ISU54_00025 PF01751 Toprim domain ISU54_00025 PF00204 DNA gyrase B ISU54_00025 PF00986 DNA gyrase B subunit, carboxyl terminus ISU54_00040 PF02423 Ornithine cyclodeaminase/mu-crystallin family ISU54_00045 PF13291 ACT domain ISU54_00045 PF00291 Pyridoxal-phosphate dependent enzyme ISU54_00055 PF07119 Protein of unknown function (DUF1375) ISU54_00060 PF00011 Hsp20/alpha crystallin family ISU54_00065 PF00011 Hsp20/alpha crystallin family ISU54_00070 PF06826 Predicted Permease Membrane Region ISU54_00070 PF02080 TrkA-C domain ISU54_00075 PF00155 Aminotransferase class I and II ISU54_00085 PF00128 Alpha amylase, catalytic domain ISU54_00090 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain ISU54_00090 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ISU54_00100 PF00691 OmpA family ISU54_00100 PF13488 Glycine zipper ISU54_00110 PF03352 Methyladenine glycosylase ISU54_00115 PF02091 Glycyl-tRNA synthetase alpha subunit ISU54_00120 PF05746 DALR anticodon binding domain ISU54_00120 PF02092 Glycyl-tRNA synthetase beta subunit ISU54_00130 PF11254 Protein of unknown function (DUF3053) ISU54_00135 PF02378 Phosphotransferase system, EIIC ISU54_00135 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 ISU54_00135 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit ISU54_00140 PF01232 Mannitol dehydrogenase Rossmann domain ISU54_00140 PF08125 Mannitol dehydrogenase C-terminal domain ISU54_00145 PF05068 Mannitol repressor ISU54_00150 PF10928 Protein of unknown function (DUF2810) ISU54_00165 PF00672 HAMP domain ISU54_00165 PF02203 Tar ligand binding domain homologue ISU54_00165 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ISU54_00170 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain ISU54_00170 PF02777 Iron/manganese superoxide dismutases, C-terminal domain ISU54_00175 PF02634 FdhD/NarQ family ISU54_00185 PF09163 Formate dehydrogenase N, transmembrane ISU54_00185 PF13247 4Fe-4S dicluster domain ISU54_00190 PF01292 Prokaryotic cytochrome b561 ISU54_00195 PF04216 Protein involved in formate dehydrogenase formation ISU54_00200 PF03841 L-seryl-tRNA selenium transferase ISU54_00200 PF12390 Selenocysteine synthase N terminal ISU54_00205 PF00009 Elongation factor Tu GTP binding domain ISU54_00205 PF09107 Elongation factor SelB, winged helix ISU54_00205 PF09106 Elongation factor SelB, winged helix ISU54_00205 PF03144 Elongation factor Tu domain 2 ISU54_00235 PF07690 Major Facilitator Superfamily ISU54_00250 PF01757 Acyltransferase family ISU54_00255 PF00419 Fimbrial protein ISU54_00275 PF02782 FGGY family of carbohydrate kinases, C-terminal domain ISU54_00275 PF00370 FGGY family of carbohydrate kinases, N-terminal domain ISU54_00285 PF13407 Periplasmic binding protein domain ISU54_00290 PF00005 ABC transporter ISU54_00295 PF02653 Branched-chain amino acid transport system / permease component ISU54_00300 PF12833 Helix-turn-helix domain ISU54_00310 PF00589 Phage integrase family ISU54_00310 PF13356 Arm DNA-binding domain ISU54_00310 PF14659 Phage integrase, N-terminal SAM-like domain ISU54_00320 PF04606 Ogr/Delta-like zinc finger ISU54_00355 PF00005 ABC transporter ISU54_00360 PF01032 FecCD transport family ISU54_00365 PF01032 FecCD transport family ISU54_00370 PF01497 Periplasmic binding protein ISU54_00385 PF00156 Phosphoribosyl transferase domain ISU54_00390 PF00291 Pyridoxal-phosphate dependent enzyme ISU54_00395 PF17391 Urocanase N-terminal domain ISU54_00395 PF17392 Urocanase C-terminal domain ISU54_00395 PF01175 Urocanase Rossmann-like domain ISU54_00400 PF00221 Aromatic amino acid lyase ISU54_00405 PF00324 Amino acid permease ISU54_00410 PF12146 Serine aminopeptidase, S33 ISU54_00415 PF08019 Phosphoethanolamine transferase EptA/EptB ISU54_00415 PF00884 Sulfatase ISU54_00420 PF00072 Response regulator receiver domain ISU54_00420 PF00196 Bacterial regulatory proteins, luxR family ISU54_00430 PF02796 Helix-turn-helix domain of resolvase ISU54_00430 PF00665 Integrase core domain ISU54_00435 PF01695 IstB-like ATP binding protein ISU54_00440 PF00132 Bacterial transferase hexapeptide (six repeats) ISU54_00445 PF08501 Shikimate dehydrogenase substrate binding domain ISU54_00445 PF01488 Shikimate / quinate 5-dehydrogenase ISU54_00445 PF18317 Shikimate 5'-dehydrogenase C-terminal domain ISU54_00450 PF01300 Telomere recombination ISU54_00455 PF01396 Topoisomerase DNA binding C4 zinc finger ISU54_00460 PF04361 Protein of unknown function (DUF494) ISU54_00465 PF17782 DprA winged helix domain ISU54_00465 PF02481 DNA recombination-mediator protein A ISU54_00470 PF01327 Polypeptide deformylase ISU54_00475 PF00551 Formyl transferase ISU54_00475 PF02911 Formyl transferase, C-terminal domain ISU54_00480 PF01029 NusB family ISU54_00480 PF01189 16S rRNA methyltransferase RsmB/F ISU54_00485 PF02254 TrkA-N domain ISU54_00485 PF02080 TrkA-C domain ISU54_00490 PF01741 Large-conductance mechanosensitive channel, MscL ISU54_00495 PF03889 Alternative ribosome-rescue factor A ISU54_00500 PF13411 MerR HTH family regulatory protein ISU54_00505 PF01196 Ribosomal protein L17 ISU54_00510 PF01000 RNA polymerase Rpb3/RpoA insert domain ISU54_00510 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain ISU54_00510 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain ISU54_00515 PF01479 S4 domain ISU54_00515 PF00163 Ribosomal protein S4/S9 N-terminal domain ISU54_00520 PF00411 Ribosomal protein S11 ISU54_00525 PF00416 Ribosomal protein S13/S18 ISU54_00530 PF00444 Ribosomal protein L36 ISU54_00535 PF00344 SecY translocase ISU54_00540 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A ISU54_00545 PF00327 Ribosomal protein L30p/L7e ISU54_00550 PF03719 Ribosomal protein S5, C-terminal domain ISU54_00550 PF00333 Ribosomal protein S5, N-terminal domain ISU54_00555 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast ISU54_00560 PF00347 Ribosomal protein L6 ISU54_00565 PF00410 Ribosomal protein S8 ISU54_00570 PF00253 Ribosomal protein S14p/S29e ISU54_00575 PF00673 ribosomal L5P family C-terminus ISU54_00575 PF00281 Ribosomal protein L5 ISU54_00580 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 ISU54_00580 PF00467 KOW motif ISU54_00585 PF00238 Ribosomal protein L14p/L23e ISU54_00590 PF00366 Ribosomal protein S17 ISU54_00595 PF00831 Ribosomal L29 protein ISU54_00600 PF00252 Ribosomal protein L16p/L10e ISU54_00605 PF00189 Ribosomal protein S3, C-terminal domain ISU54_00605 PF07650 KH domain ISU54_00610 PF00237 Ribosomal protein L22p/L17e ISU54_00615 PF00203 Ribosomal protein S19 ISU54_00620 PF03947 Ribosomal Proteins L2, C-terminal domain ISU54_00620 PF00181 Ribosomal Proteins L2, RNA binding domain ISU54_00625 PF00276 Ribosomal protein L23 ISU54_00630 PF00573 Ribosomal protein L4/L1 family ISU54_00635 PF00297 Ribosomal protein L3 ISU54_00640 PF00338 Ribosomal protein S10p/S20e ISU54_00645 PF00210 Ferritin-like domain ISU54_00650 PF04324 BFD-like [2Fe-2S] binding domain ISU54_00655 PF01797 Transposase IS200 like ISU54_00660 PF03143 Elongation factor Tu C-terminal domain ISU54_00660 PF00009 Elongation factor Tu GTP binding domain ISU54_00660 PF03144 Elongation factor Tu domain 2 ISU54_00665 PF03144 Elongation factor Tu domain 2 ISU54_00665 PF03764 Elongation factor G, domain IV ISU54_00665 PF14492 Elongation Factor G, domain II ISU54_00665 PF00679 Elongation factor G C-terminus ISU54_00665 PF00009 Elongation factor Tu GTP binding domain ISU54_00670 PF00177 Ribosomal protein S7p/S5e ISU54_00675 PF00164 Ribosomal protein S12/S23 ISU54_00680 PF04077 DsrH like protein ISU54_00685 PF02635 DsrE/DsrF-like family ISU54_00690 PF02635 DsrE/DsrF-like family ISU54_00695 PF08348 YheO-like PAS domain ISU54_00695 PF13309 HTH domain ISU54_00700 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase ISU54_00700 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase ISU54_00705 PF04102 SlyX ISU54_00710 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase ISU54_00715 PF09526 Probable metal-binding protein (DUF2387) ISU54_00720 PF00999 Sodium/hydrogen exchanger family ISU54_00720 PF02254 TrkA-N domain ISU54_00725 PF02525 Flavodoxin-like fold ISU54_00735 PF00535 Glycosyl transferase family 2 ISU54_00745 PF02668 Taurine catabolism dioxygenase TauD, TfdA family ISU54_00750 PF00528 Binding-protein-dependent transport system inner membrane component ISU54_00755 PF00005 ABC transporter ISU54_00760 PF04069 Substrate binding domain of ABC-type glycine betaine transport system ISU54_00765 PF01810 LysE type translocator ISU54_00770 PF00561 alpha/beta hydrolase fold ISU54_00775 PF06794 Uncharacterised protein family (UPF0270) ISU54_00780 PF00485 Phosphoribulokinase / Uridine kinase family ISU54_00790 PF02566 OsmC-like protein ISU54_00795 PF13545 Crp-like helix-turn-helix domain ISU54_00795 PF00027 Cyclic nucleotide-binding domain ISU54_00800 PF12805 FUSC-like inner membrane protein yccS ISU54_00805 PF00202 Aminotransferase class-III ISU54_00810 PF00117 Glutamine amidotransferase class-I ISU54_00815 PF05872 Bacterial protein of unknown function (DUF853) ISU54_00820 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD ISU54_00825 PF02056 Family 4 glycosyl hydrolase ISU54_00825 PF11975 Family 4 glycosyl hydrolase C-terminal domain ISU54_00830 PF00356 Bacterial regulatory proteins, lacI family ISU54_00840 PF07690 Major Facilitator Superfamily ISU54_00845 PF07969 Amidohydrolase family ISU54_00850 PF18267 Rubredoxin NAD+ reductase C-terminal domain ISU54_00850 PF04324 BFD-like [2Fe-2S] binding domain ISU54_00850 PF01077 Nitrite and sulphite reductase 4Fe-4S domain ISU54_00850 PF07992 Pyridine nucleotide-disulphide oxidoreductase ISU54_00850 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain ISU54_00855 PF13806 Rieske-like [2Fe-2S] domain ISU54_00860 PF01226 Formate/nitrite transporter ISU54_00865 PF10414 Sirohaem synthase dimerisation region ISU54_00865 PF14824 Sirohaem biosynthesis protein central ISU54_00865 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases ISU54_00870 PF00579 tRNA synthetases class I (W and Y) ISU54_00875 PF13419 Haloacid dehalogenase-like hydrolase ISU54_00880 PF00834 Ribulose-phosphate 3 epimerase family ISU54_00885 PF02086 D12 class N6 adenine-specific DNA methyltransferase ISU54_00890 PF05036 Sporulation related domain ISU54_00895 PF01761 3-dehydroquinate synthase ISU54_00900 PF01202 Shikimate kinase ISU54_00905 PF03958 Bacterial type II/III secretion system short domain ISU54_00905 PF00263 Bacterial type II and III secretion system protein ISU54_00930 PF00905 Penicillin binding protein transpeptidase domain ISU54_00930 PF17092 Penicillin-binding protein OB-like domain ISU54_00930 PF00912 Transglycosylase ISU54_00935 PF00293 NUDIX domain ISU54_00940 PF07095 Intracellular growth attenuator protein IgaA ISU54_00945 PF13419 Haloacid dehalogenase-like hydrolase ISU54_00950 PF01479 S4 domain ISU54_00955 PF01430 Hsp33 protein ISU54_00960 PF01293 Phosphoenolpyruvate carboxykinase ISU54_00965 PF00672 HAMP domain ISU54_00965 PF00512 His Kinase A (phospho-acceptor) domain ISU54_00965 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ISU54_00970 PF00486 Transcriptional regulatory protein, C terminal ISU54_00970 PF00072 Response regulator receiver domain ISU54_00975 PF03449 Transcription elongation factor, N-terminal ISU54_00975 PF01272 Transcription elongation factor, GreA/GreB, C-term ISU54_00980 PF00575 S1 RNA binding domain ISU54_00980 PF17674 HHH domain ISU54_00980 PF09371 Tex-like protein N-terminal domain ISU54_00980 PF16921 Tex protein YqgF-like domain ISU54_00985 PF04023 FeoA domain ISU54_00990 PF07664 Ferrous iron transport protein B C terminus ISU54_00990 PF02421 Ferrous iron transport protein B ISU54_00990 PF07670 Nucleoside recognition ISU54_00990 PF17910 FeoB cytosolic helical domain ISU54_00995 PF09012 FeoC like transcriptional regulator ISU54_01000 PF07338 Protein of unknown function (DUF1471) ISU54_01005 PF00561 alpha/beta hydrolase fold ISU54_01010 PF00156 Phosphoribosyl transferase domain ISU54_01015 PF01106 NifU-like domain ISU54_01015 PF01521 Iron-sulphur cluster biosynthesis ISU54_01020 PF02446 4-alpha-glucanotransferase ISU54_01025 PF00343 Carbohydrate phosphorylase ISU54_01030 PF00343 Carbohydrate phosphorylase ISU54_01035 PF17874 MalT-like TPR region ISU54_01035 PF00196 Bacterial regulatory proteins, luxR family ISU54_01040 PF00581 Rhodanese-like domain ISU54_01045 PF01694 Rhomboid family ISU54_01045 PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease ISU54_01050 PF08220 DeoR-like helix-turn-helix domain ISU54_01050 PF00455 DeoR C terminal sensor domain ISU54_01075 PF16901 C-terminal domain of alpha-glycerophosphate oxidase ISU54_01075 PF01266 FAD dependent oxidoreductase ISU54_01080 PF00343 Carbohydrate phosphorylase ISU54_01085 PF08323 Starch synthase catalytic domain ISU54_01085 PF00534 Glycosyl transferases group 1 ISU54_01090 PF00483 Nucleotidyl transferase ISU54_01095 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) ISU54_01095 PF18390 Glycogen debranching enzyme C-terminal domain ISU54_01095 PF00128 Alpha amylase, catalytic domain ISU54_01100 PF00128 Alpha amylase, catalytic domain ISU54_01100 PF02806 Alpha amylase, C-terminal all-beta domain ISU54_01100 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) ISU54_01105 PF06580 Histidine kinase ISU54_01105 PF07694 5TMR of 5TMR-LYT ISU54_01110 PF09134 Invasin, domain 3 ISU54_01110 PF07979 Intimin C-type lectin domain ISU54_01110 PF11924 Inverse autotransporter, beta-domain ISU54_01110 PF02369 Bacterial Ig-like domain (group 1) ISU54_01140 PF01118 Semialdehyde dehydrogenase, NAD binding domain ISU54_01140 PF02774 Semialdehyde dehydrogenase, dimerisation domain ISU54_01145 PF01914 MarC family integral membrane protein ISU54_01160 PF01202 Shikimate kinase ISU54_01165 PF02447 GntP family permease ISU54_01170 PF00356 Bacterial regulatory proteins, lacI family ISU54_01170 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family ISU54_01175 PF17954 Quercetinase C-terminal cupin domain ISU54_01175 PF02678 Pirin ISU54_01185 PF00072 Response regulator receiver domain ISU54_01185 PF00486 Transcriptional regulatory protein, C terminal ISU54_01195 PF01116 Fructose-bisphosphate aldolase class-II ISU54_01205 PF13407 Periplasmic binding protein domain ISU54_01210 PF02653 Branched-chain amino acid transport system / permease component ISU54_01215 PF00005 ABC transporter ISU54_01220 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ISU54_01220 PF08448 PAS fold ISU54_01220 PF13188 PAS domain ISU54_01220 PF00072 Response regulator receiver domain ISU54_01220 PF00512 His Kinase A (phospho-acceptor) domain ISU54_01230 PF01384 Phosphate transporter family ISU54_01235 PF01797 Transposase IS200 like ISU54_01240 PF10625 Universal stress protein B (UspB) ISU54_01245 PF00582 Universal stress protein family ISU54_01250 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain ISU54_01250 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase ISU54_01255 PF08548 Peptidase M10 serralysin C terminal ISU54_01255 PF00413 Matrixin ISU54_01255 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) ISU54_01260 PF04445 Putative SAM-dependent methyltransferase ISU54_01265 PF01432 Peptidase family M3 ISU54_01270 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ ISU54_01275 PF07992 Pyridine nucleotide-disulphide oxidoreductase ISU54_01275 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain ISU54_01280 PF13556 PucR C-terminal helix-turn-helix domain ISU54_01280 PF05651 Putative sugar diacid recognition ISU54_01280 PF17853 GGDEF-like domain ISU54_01290 PF02447 GntP family permease ISU54_01295 PF02595 Glycerate kinase family ISU54_01320 PF03631 Virulence factor BrkB ISU54_01325 PF02611 CDP-diacylglycerol pyrophosphatase ISU54_01330 PF05170 AsmA family ISU54_01335 PF00563 EAL domain ISU54_01340 PF01361 Tautomerase enzyme ISU54_01345 PF00294 pfkB family carbohydrate kinase ISU54_01350 PF05193 Peptidase M16 inactive domain ISU54_01350 PF00675 Insulinase (Peptidase family M16) ISU54_01355 PF00375 Sodium:dicarboxylate symporter family ISU54_01365 PF06917 Periplasmic pectate lyase ISU54_01370 PF06178 Oligogalacturonate-specific porin protein (KdgM) ISU54_01375 PF17154 Gammaproteobacterial periplasmic sensor domain ISU54_01375 PF00990 Diguanylate cyclase, GGDEF domain ISU54_01375 PF00672 HAMP domain ISU54_01375 PF00563 EAL domain ISU54_01380 PF01270 Glycosyl hydrolases family 8 ISU54_01385 PF08352 Oligopeptide/dipeptide transporter, C-terminal region ISU54_01385 PF00005 ABC transporter ISU54_01390 PF00005 ABC transporter ISU54_01390 PF08352 Oligopeptide/dipeptide transporter, C-terminal region ISU54_01395 PF12911 N-terminal TM domain of oligopeptide transport permease C ISU54_01395 PF00528 Binding-protein-dependent transport system inner membrane component ISU54_01400 PF00528 Binding-protein-dependent transport system inner membrane component ISU54_01405 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle ISU54_01410 PF17287 POTRA domain ISU54_01410 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB ISU54_01410 PF08479 POTRA domain, ShlB-type ISU54_01415 PF05860 haemagglutination activity domain ISU54_01415 PF13332 Hemagglutinin repeat ISU54_01415 PF05594 Haemagluttinin repeat ISU54_01415 PF04829 Pre-toxin domain with VENN motif ISU54_01425 PF07690 Major Facilitator Superfamily ISU54_01430 PF07730 Histidine kinase ISU54_01430 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ISU54_01430 PF05231 MASE1 ISU54_01435 PF01695 IstB-like ATP binding protein ISU54_01440 PF00665 Integrase core domain ISU54_01440 PF02796 Helix-turn-helix domain of resolvase ISU54_01475 PF04204 Homoserine O-succinyltransferase ISU54_01480 PF01274 Malate synthase ISU54_01485 PF00463 Isocitrate lyase family ISU54_01490 PF06315 Isocitrate dehydrogenase kinase/phosphatase (AceK) ISU54_01500 PF02607 B12 binding domain ISU54_01500 PF02310 B12 binding domain ISU54_01500 PF00809 Pterin binding enzyme ISU54_01500 PF02965 Vitamin B12 dependent methionine synthase, activation domain ISU54_01500 PF02574 Homocysteine S-methyltransferase ISU54_01505 PF13332 Hemagglutinin repeat ISU54_01505 PF05860 haemagglutination activity domain ISU54_01515 PF01842 ACT domain ISU54_01515 PF00696 Amino acid kinase family ISU54_01520 PF00342 Phosphoglucose isomerase ISU54_01525 PF06146 Phosphate-starvation-inducible E ISU54_01530 PF00528 Binding-protein-dependent transport system inner membrane component ISU54_01535 PF00528 Binding-protein-dependent transport system inner membrane component ISU54_01535 PF14785 Maltose transport system permease protein MalF P2 domain ISU54_01540 PF01547 Bacterial extracellular solute-binding protein ISU54_01550 PF17912 MalK OB fold domain ISU54_01550 PF00005 ABC transporter ISU54_01555 PF02264 LamB porin ISU54_01560 PF07148 Maltose operon periplasmic protein precursor (MalM) ISU54_01570 PF05638 Type VI secretion system effector, Hcp ISU54_01580 PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath ISU54_01600 PF01695 IstB-like ATP binding protein ISU54_01605 PF02796 Helix-turn-helix domain of resolvase ISU54_01605 PF00665 Integrase core domain ISU54_01615 PF00691 OmpA family ISU54_01620 PF00990 Diguanylate cyclase, GGDEF domain ISU54_01620 PF17152 Periplasmic sensor domain ISU54_01630 PF00689 Cation transporting ATPase, C-terminus ISU54_01630 PF00690 Cation transporter/ATPase, N-terminus ISU54_01635 PF01464 Transglycosylase SLT domain ISU54_01635 PF14718 Soluble lytic murein transglycosylase L domain ISU54_01640 PF01371 Trp repressor protein ISU54_01645 PF01931 Protein of unknown function DUF84 ISU54_01650 PF00300 Histidine phosphatase superfamily (branch 1) ISU54_01655 PF06445 GyrI-like small molecule binding domain ISU54_01655 PF12833 Helix-turn-helix domain ISU54_01660 PF05981 CreA protein ISU54_01665 PF00072 Response regulator receiver domain ISU54_01665 PF00486 Transcriptional regulatory protein, C terminal ISU54_01670 PF08254 Threonine leader peptide ISU54_01675 PF00742 Homoserine dehydrogenase ISU54_01675 PF13840 ACT domain ISU54_01675 PF01842 ACT domain ISU54_01675 PF00696 Amino acid kinase family ISU54_01675 PF03447 Homoserine dehydrogenase, NAD binding domain ISU54_01680 PF00288 GHMP kinases N terminal domain ISU54_01680 PF08544 GHMP kinases C terminal ISU54_01685 PF00291 Pyridoxal-phosphate dependent enzyme ISU54_01685 PF14821 Threonine synthase N terminus ISU54_01690 PF03883 Peroxide stress protein YaaA ISU54_01700 PF00923 Transaldolase/Fructose-6-phosphate aldolase ISU54_01705 PF00994 Probable molybdopterin binding domain ISU54_01710 PF07690 Major Facilitator Superfamily ISU54_01720 PF01184 GPR1/FUN34/yaaH family ISU54_01725 PF00012 Hsp70 protein ISU54_01730 PF00226 DnaJ domain ISU54_01730 PF01556 DnaJ C terminal domain ISU54_01730 PF00684 DnaJ central domain ISU54_01735 PF06965 Na+/H+ antiporter 1 ISU54_01740 PF03466 LysR substrate binding domain ISU54_01740 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ISU54_01745 PF01649 Ribosomal protein S20 ISU54_01750 PF06574 FAD synthetase ISU54_01750 PF01687 Riboflavin kinase ISU54_01755 PF06827 Zinc finger found in FPG and IleRS ISU54_01755 PF08264 Anticodon-binding domain of tRNA ISU54_01755 PF00133 tRNA synthetases class I (I, L, M and V) ISU54_01760 PF01252 Signal peptidase (SPase) II ISU54_01765 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase ISU54_01770 PF02401 LytB protein ISU54_01775 PF01797 Transposase IS200 like ISU54_01780 PF01113 Dihydrodipicolinate reductase, N-terminus ISU54_01780 PF05173 Dihydrodipicolinate reductase, C-terminus ISU54_01785 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain ISU54_01785 PF00117 Glutamine amidotransferase class-I ISU54_01790 PF02142 MGS-like domain ISU54_01790 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain ISU54_01790 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain ISU54_01795 PF01810 LysE type translocator ISU54_01800 PF06738 Putative threonine/serine exporter ISU54_01805 PF12821 Threonine/Serine exporter, ThrE ISU54_01810 PF00186 Dihydrofolate reductase ISU54_01815 PF01797 Transposase IS200 like ISU54_01830 PF00149 Calcineurin-like phosphoesterase ISU54_01835 PF04379 ApaG domain ISU54_01840 PF00398 Ribosomal RNA adenine dimethylase ISU54_01845 PF04166 Pyridoxal phosphate biosynthetic protein PdxA ISU54_01850 PF00639 PPIC-type PPIASE domain ISU54_01850 PF09312 SurA N-terminal domain ISU54_01855 PF03968 OstA-like protein ISU54_01855 PF04453 LPS transport system D ISU54_01860 PF05099 Tellurite resistance protein TerB ISU54_01860 PF00226 DnaJ domain ISU54_01865 PF00849 RNA pseudouridylate synthase ISU54_01880 PF05591 Type VI secretion system, VipA, VC_A0107 or Hcp2 ISU54_01885 PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath ISU54_01900 PF05947 Type VI secretion system, TssF ISU54_01910 PF07724 AAA domain (Cdc48 subfamily) ISU54_01910 PF10431 C-terminal, D2-small domain, of ClpB protein ISU54_01910 PF17871 AAA lid domain ISU54_01910 PF00004 ATPase family associated with various cellular activities (AAA) ISU54_01915 PF04717 Type VI secretion system, phage-baseplate injector ISU54_01915 PF06715 Gp5 C-terminal repeat (3 copies) ISU54_01945 PF05936 Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE ISU54_01950 PF05736 OprF membrane domain ISU54_01950 PF00691 OmpA family ISU54_01965 PF12137 RNA polymerase recycling family C-terminal ISU54_01965 PF00176 SNF2 family N-terminal domain ISU54_01965 PF18339 RapA N-terminal Tudor like domain 1 ISU54_01965 PF00271 Helicase conserved C-terminal domain ISU54_01965 PF18337 RapA N-terminal Tudor like domain ISU54_01970 PF03104 DNA polymerase family B, exonuclease domain ISU54_01970 PF00136 DNA polymerase family B ISU54_01975 PF09335 SNARE associated Golgi protein ISU54_01980 PF00005 ABC transporter ISU54_01985 PF00528 Binding-protein-dependent transport system inner membrane component ISU54_01995 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle ISU54_01995 PF12793 Sugar transport-related sRNA regulator N-term ISU54_02000 PF07690 Major Facilitator Superfamily ISU54_02005 PF00694 Aconitase C-terminal domain ISU54_02010 PF00330 Aconitase family (aconitate hydratase) ISU54_02015 PF00180 Isocitrate/isopropylmalate dehydrogenase ISU54_02020 PF00682 HMGL-like ISU54_02020 PF08502 LeuA allosteric (dimerisation) domain ISU54_02025 PF01797 Transposase IS200 like ISU54_02035 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ISU54_02035 PF03466 LysR substrate binding domain ISU54_02040 PF00501 AMP-binding enzyme ISU54_02045 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain ISU54_02045 PF00205 Thiamine pyrophosphate enzyme, central domain ISU54_02045 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain ISU54_02050 PF10369 Small subunit of acetolactate synthase ISU54_02055 PF01797 Transposase IS200 like ISU54_02060 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family ISU54_02060 PF00356 Bacterial regulatory proteins, lacI family ISU54_02065 PF06610 L-alanine exporter ISU54_02075 PF02381 MraZ protein, putative antitoxin-like ISU54_02080 PF01795 MraW methylase family ISU54_02085 PF04999 Cell division protein FtsL ISU54_02090 PF00905 Penicillin binding protein transpeptidase domain ISU54_02090 PF03717 Penicillin-binding Protein dimerisation domain ISU54_02095 PF02875 Mur ligase family, glutamate ligase domain ISU54_02095 PF01225 Mur ligase family, catalytic domain ISU54_02095 PF08245 Mur ligase middle domain ISU54_02100 PF01225 Mur ligase family, catalytic domain ISU54_02100 PF02875 Mur ligase family, glutamate ligase domain ISU54_02100 PF08245 Mur ligase middle domain ISU54_02105 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 ISU54_02105 PF00953 Glycosyl transferase family 4 ISU54_02110 PF08245 Mur ligase middle domain ISU54_02110 PF02875 Mur ligase family, glutamate ligase domain ISU54_02115 PF01098 Cell cycle protein ISU54_02120 PF03033 Glycosyltransferase family 28 N-terminal domain ISU54_02120 PF04101 Glycosyltransferase family 28 C-terminal domain ISU54_02125 PF02875 Mur ligase family, glutamate ligase domain ISU54_02125 PF08245 Mur ligase middle domain ISU54_02125 PF01225 Mur ligase family, catalytic domain ISU54_02130 PF01820 D-ala D-ala ligase N-terminus ISU54_02130 PF07478 D-ala D-ala ligase C-terminus ISU54_02135 PF03799 Cell division protein FtsQ ISU54_02135 PF08478 POTRA domain, FtsQ-type ISU54_02140 PF02491 SHS2 domain inserted in FTSA ISU54_02145 PF12327 FtsZ family, C-terminal domain ISU54_02145 PF00091 Tubulin/FtsZ family, GTPase domain ISU54_02150 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase ISU54_02160 PF06558 Secretion monitor precursor protein (SecM) ISU54_02165 PF02810 SEC-C motif ISU54_02165 PF07517 SecA DEAD-like domain ISU54_02165 PF07516 SecA Wing and Scaffold domain ISU54_02165 PF01043 SecA preprotein cross-linking domain ISU54_02175 PF00293 NUDIX domain ISU54_02180 PF01695 IstB-like ATP binding protein ISU54_02185 PF00665 Integrase core domain ISU54_02185 PF02796 Helix-turn-helix domain of resolvase ISU54_02195 PF07681 DoxX ISU54_02205 PF07332 Putative Actinobacterial Holin-X, holin superfamily III ISU54_02210 PF05957 Bacterial protein of unknown function (DUF883) ISU54_02220 PF13721 SecD export protein N-terminal TM region ISU54_02225 PF09335 SNARE associated Golgi protein ISU54_02235 PF00392 Bacterial regulatory proteins, gntR family ISU54_02235 PF07729 FCD domain ISU54_02240 PF07690 Major Facilitator Superfamily ISU54_02245 PF02614 Glucuronate isomerase ISU54_02250 PF08125 Mannitol dehydrogenase C-terminal domain ISU54_02250 PF01232 Mannitol dehydrogenase Rossmann domain ISU54_02255 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus ISU54_02255 PF08666 SAF domain ISU54_02260 PF10688 Bacterial inner membrane protein ISU54_02265 PF01797 Transposase IS200 like ISU54_02270 PF00375 Sodium:dicarboxylate symporter family ISU54_02275 PF01408 Oxidoreductase family, NAD-binding Rossmann fold ISU54_02280 PF01863 Protein of unknown function DUF45 ISU54_02290 PF05175 Methyltransferase small domain ISU54_02295 PF00724 NADH:flavin oxidoreductase / NADH oxidase family ISU54_02295 PF07992 Pyridine nucleotide-disulphide oxidoreductase ISU54_02300 PF03729 Short repeat of unknown function (DUF308) ISU54_02315 PF00092 von Willebrand factor type A domain ISU54_02325 PF02342 TerD domain ISU54_02330 PF00092 von Willebrand factor type A domain ISU54_02335 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB ISU54_02335 PF17287 POTRA domain ISU54_02335 PF08479 POTRA domain, ShlB-type ISU54_02340 PF13018 Extended Signal Peptide of Type V secretion system ISU54_02340 PF13332 Hemagglutinin repeat ISU54_02340 PF05860 haemagglutination activity domain ISU54_02340 PF04829 Pre-toxin domain with VENN motif ISU54_02350 PF04829 Pre-toxin domain with VENN motif ISU54_02350 PF13332 Hemagglutinin repeat ISU54_02355 PF13332 Hemagglutinin repeat ISU54_02355 PF04829 Pre-toxin domain with VENN motif ISU54_02370 PF04829 Pre-toxin domain with VENN motif ISU54_02370 PF13332 Hemagglutinin repeat ISU54_02370 PF05860 haemagglutination activity domain ISU54_02370 PF13018 Extended Signal Peptide of Type V secretion system ISU54_02375 PF13018 Extended Signal Peptide of Type V secretion system ISU54_02375 PF04829 Pre-toxin domain with VENN motif ISU54_02375 PF13332 Hemagglutinin repeat ISU54_02375 PF05860 haemagglutination activity domain ISU54_02395 PF00005 ABC transporter ISU54_02395 PF17912 MalK OB fold domain ISU54_02395 PF03459 TOBE domain ISU54_02400 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain ISU54_02405 PF00356 Bacterial regulatory proteins, lacI family ISU54_02410 PF01547 Bacterial extracellular solute-binding protein ISU54_02415 PF00528 Binding-protein-dependent transport system inner membrane component ISU54_02420 PF00528 Binding-protein-dependent transport system inner membrane component ISU54_02430 PF00933 Glycosyl hydrolase family 3 N terminal domain ISU54_02430 PF14310 Fibronectin type III-like domain ISU54_02430 PF01915 Glycosyl hydrolase family 3 C-terminal domain ISU54_02440 PF04632 Fusaric acid resistance protein family ISU54_02445 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion ISU54_02445 PF00529 HlyD membrane-fusion protein of T1SS ISU54_02460 PF00155 Aminotransferase class I and II ISU54_02480 PF01042 Endoribonuclease L-PSP ISU54_02500 PF03466 LysR substrate binding domain ISU54_02500 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ISU54_02545 PF04539 Sigma-70 region 3 ISU54_02545 PF00140 Sigma-70 factor, region 1.2 ISU54_02545 PF04542 Sigma-70 region 2 ISU54_02545 PF03979 Sigma-70 factor, region 1.1 ISU54_02545 PF04546 Sigma-70, non-essential region ISU54_02545 PF04545 Sigma-70, region 4 ISU54_02550 PF10410 DnaB-helicase binding domain of primase ISU54_02550 PF08275 DNA primase catalytic core, N-terminal domain ISU54_02550 PF08278 DNA primase DnaG DnaB-binding ISU54_02550 PF01807 CHC2 zinc finger ISU54_02555 PF01165 Ribosomal protein S21 ISU54_02560 PF00814 Glycoprotease family ISU54_02565 PF02660 Glycerol-3-phosphate acyltransferase ISU54_02570 PF02152 Dihydroneopterin aldolase ISU54_02575 PF02673 Bacitracin resistance protein BacA ISU54_02580 PF01966 HD domain ISU54_02580 PF01743 Poly A polymerase head domain ISU54_02580 PF12627 Probable RNA and SrmB- binding site of polymerase A ISU54_02585 PF08239 Bacterial SH3 domain ISU54_02590 PF01928 CYTH domain ISU54_02595 PF03710 Glutamate-ammonia ligase adenylyltransferase ISU54_02595 PF08335 GlnD PII-uridylyltransferase ISU54_02600 PF01467 Cytidylyltransferase-like ISU54_02600 PF00294 pfkB family carbohydrate kinase ISU54_02605 PF13520 Amino acid permease ISU54_02615 PF04380 Membrane fusogenic activity ISU54_02620 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase ISU54_02625 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase ISU54_02630 PF03738 Glutathionylspermidine synthase preATP-grasp ISU54_02635 PF06693 Protein of unknown function (DUF1190) ISU54_02640 PF02321 Outer membrane efflux protein ISU54_02645 PF00293 NUDIX domain ISU54_02650 PF06853 Protein of unknown function (DUF1249) ISU54_02655 PF00149 Calcineurin-like phosphoesterase ISU54_02660 PF05728 Uncharacterised protein family (UPF0227) ISU54_02665 PF00204 DNA gyrase B ISU54_02665 PF00986 DNA gyrase B subunit, carboxyl terminus ISU54_02665 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ISU54_02665 PF01751 Toprim domain ISU54_02670 PF03466 LysR substrate binding domain ISU54_02670 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ISU54_02675 PF02525 Flavodoxin-like fold ISU54_02685 PF00521 DNA gyrase/topoisomerase IV, subunit A ISU54_02685 PF03989 DNA gyrase C-terminal domain, beta-propeller ISU54_02690 PF01553 Acyltransferase ISU54_02695 PF07731 Multicopper oxidase ISU54_02695 PF07732 Multicopper oxidase ISU54_02705 PF00248 Aldo/keto reductase family ISU54_02715 PF00465 Iron-containing alcohol dehydrogenase ISU54_02720 PF12833 Helix-turn-helix domain ISU54_02720 PF06719 AraC-type transcriptional regulator N-terminus ISU54_02725 PF09335 SNARE associated Golgi protein ISU54_02730 PF01053 Cys/Met metabolism PLP-dependent enzyme ISU54_02735 PF01618 MotA/TolQ/ExbB proton channel family ISU54_02740 PF02472 Biopolymer transport protein ExbD/TolR ISU54_02775 PF00437 Type II/IV secretion system protein ISU54_02790 PF04972 BON domain ISU54_02790 PF00263 Bacterial type II and III secretion system protein ISU54_02790 PF13629 Pilus formation protein N terminal region ISU54_02795 PF04972 BON domain ISU54_02795 PF13629 Pilus formation protein N terminal region ISU54_02795 PF00263 Bacterial type II and III secretion system protein ISU54_02810 PF01797 Transposase IS200 like ISU54_02815 PF13953 PapC C-terminal domain ISU54_02815 PF13954 PapC N-terminal domain ISU54_02815 PF00577 Outer membrane usher protein ISU54_02820 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain ISU54_02820 PF02753 Pili assembly chaperone PapD, C-terminal domain ISU54_02825 PF09222 Fimbrial adhesin F17-AG, lectin domain ISU54_02825 PF00419 Fimbrial protein ISU54_02830 PF01497 Periplasmic binding protein ISU54_02850 PF01312 FlhB HrpN YscU SpaS Family ISU54_02855 PF01311 Bacterial export proteins, family 1 ISU54_02860 PF01313 Bacterial export proteins, family 3 ISU54_02865 PF00813 FliP family ISU54_02870 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term ISU54_02880 PF00072 Response regulator receiver domain ISU54_02880 PF00158 Sigma-54 interaction domain ISU54_02880 PF02954 Bacterial regulatory protein, Fis family ISU54_02885 PF02049 Flagellar hook-basal body complex protein FliE ISU54_02890 PF08345 Flagellar M-ring protein C-terminal ISU54_02890 PF01514 Secretory protein of YscJ/FliF family ISU54_02905 PF18269 T3SS EscN ATPase C-terminal domain ISU54_02905 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain ISU54_02925 PF13144 Chaperone for flagella basal body P-ring formation ISU54_02930 PF00460 Flagella basal body rod protein ISU54_02935 PF06429 Flagellar basal body rod FlgEFG protein C-terminal ISU54_02935 PF00460 Flagella basal body rod protein ISU54_02940 PF13861 FlgD Tudor-like domain ISU54_02940 PF13860 FlgD Ig-like domain ISU54_02940 PF03963 Flagellar hook capping protein - N-terminal region ISU54_02945 PF06429 Flagellar basal body rod FlgEFG protein C-terminal ISU54_02945 PF00460 Flagella basal body rod protein ISU54_02945 PF07559 Flagellar basal body protein FlaE ISU54_02950 PF00460 Flagella basal body rod protein ISU54_02950 PF06429 Flagellar basal body rod FlgEFG protein C-terminal ISU54_02955 PF00460 Flagella basal body rod protein ISU54_02955 PF06429 Flagellar basal body rod FlgEFG protein C-terminal ISU54_02960 PF02107 Flagellar L-ring protein ISU54_02965 PF02119 Flagellar P-ring protein ISU54_02975 PF00460 Flagella basal body rod protein ISU54_02975 PF06429 Flagellar basal body rod FlgEFG protein C-terminal ISU54_02995 PF18500 CadC C-terminal domain 1 ISU54_02995 PF00486 Transcriptional regulatory protein, C terminal ISU54_03000 PF00669 Bacterial flagellin N-terminal helical region ISU54_03000 PF00700 Bacterial flagellin C-terminal helical region ISU54_03015 PF00356 Bacterial regulatory proteins, lacI family ISU54_03020 PF00939 Sodium:sulfate symporter transmembrane region ISU54_03035 PF03527 RHS protein ISU54_03035 PF05593 RHS Repeat ISU54_03045 PF04717 Type VI secretion system, phage-baseplate injector ISU54_03050 PF12951 Passenger-associated-transport-repeat ISU54_03060 PF02447 GntP family permease ISU54_03075 PF00005 ABC transporter ISU54_03075 PF00664 ABC transporter transmembrane region ISU54_03080 PF08021 Siderophore-interacting FAD-binding domain ISU54_03080 PF00005 ABC transporter ISU54_03080 PF00664 ABC transporter transmembrane region ISU54_03080 PF04954 Siderophore-interacting protein ISU54_03090 PF00975 Thioesterase domain ISU54_03105 PF00501 AMP-binding enzyme ISU54_03105 PF00668 Condensation domain ISU54_03105 PF08242 Methyltransferase domain ISU54_03105 PF00550 Phosphopantetheine attachment site ISU54_03110 PF00501 AMP-binding enzyme ISU54_03110 PF13193 AMP-binding enzyme C-terminal domain ISU54_03110 PF00668 Condensation domain ISU54_03115 PF00550 Phosphopantetheine attachment site ISU54_03115 PF08242 Methyltransferase domain ISU54_03115 PF00668 Condensation domain ISU54_03115 PF00501 AMP-binding enzyme ISU54_03120 PF01695 IstB-like ATP binding protein ISU54_03125 PF00665 Integrase core domain ISU54_03125 PF02796 Helix-turn-helix domain of resolvase ISU54_03135 PF07715 TonB-dependent Receptor Plug Domain ISU54_03135 PF00593 TonB dependent receptor ISU54_03140 PF07687 Peptidase dimerisation domain ISU54_03140 PF01546 Peptidase family M20/M25/M40 ISU54_03145 PF03806 AbgT putative transporter family ISU54_03150 PF14496 C-terminal novel E3 ligase, LRR-interacting ISU54_03150 PF12468 Type III secretion system leucine rich repeat protein ISU54_03155 PF12468 Type III secretion system leucine rich repeat protein ISU54_03155 PF12468 Type III secretion system leucine rich repeat protein ISU54_03155 PF14496 C-terminal novel E3 ligase, LRR-interacting ISU54_03155 PF14496 C-terminal novel E3 ligase, LRR-interacting ISU54_03165 PF12468 Type III secretion system leucine rich repeat protein ISU54_03165 PF14496 C-terminal novel E3 ligase, LRR-interacting ISU54_03170 PF03797 Autotransporter beta-domain ISU54_03180 PF07906 ShET2 enterotoxin, N-terminal region ISU54_03185 PF00873 AcrB/AcrD/AcrF family ISU54_03190 PF00529 HlyD membrane-fusion protein of T1SS ISU54_03190 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion ISU54_03200 PF00563 EAL domain ISU54_03200 PF00990 Diguanylate cyclase, GGDEF domain ISU54_03200 PF08448 PAS fold ISU54_03200 PF08447 PAS fold ISU54_03215 PF00593 TonB dependent receptor ISU54_03215 PF07715 TonB-dependent Receptor Plug Domain ISU54_03220 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) ISU54_03225 PF04183 IucA / IucC family ISU54_03225 PF06276 Ferric iron reductase FhuF-like transporter ISU54_03260 PF03472 Autoinducer binding domain ISU54_03260 PF00196 Bacterial regulatory proteins, luxR family ISU54_03265 PF00765 Autoinducer synthase ISU54_03270 PF02517 CPBP intramembrane metalloprotease ISU54_03295 PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath ISU54_03310 PF05736 OprF membrane domain ISU54_03310 PF00691 OmpA family ISU54_03320 PF00004 ATPase family associated with various cellular activities (AAA) ISU54_03320 PF07724 AAA domain (Cdc48 subfamily) ISU54_03320 PF10431 C-terminal, D2-small domain, of ClpB protein ISU54_03320 PF17871 AAA lid domain ISU54_03325 PF13296 Putative type VI secretion system Rhs element Vgr ISU54_03325 PF04717 Type VI secretion system, phage-baseplate injector ISU54_03325 PF10106 Uncharacterized protein conserved in bacteria (DUF2345) ISU54_03385 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain ISU54_03385 PF01276 Orn/Lys/Arg decarboxylase, major domain ISU54_03385 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain ISU54_03390 PF13407 Periplasmic binding protein domain ISU54_03395 PF00005 ABC transporter ISU54_03400 PF02653 Branched-chain amino acid transport system / permease component ISU54_03405 PF07715 TonB-dependent Receptor Plug Domain ISU54_03415 PF01464 Transglycosylase SLT domain ISU54_03415 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain ISU54_03420 PF04362 Bacterial Fe(2+) trafficking ISU54_03425 PF14815 NUDIX domain ISU54_03425 PF00730 HhH-GPD superfamily base excision DNA repair protein ISU54_03425 PF00633 Helix-hairpin-helix motif ISU54_03425 PF10576 Iron-sulfur binding domain of endonuclease III ISU54_03430 PF02390 Putative methyltransferase ISU54_03435 PF04320 Protein with unknown function (DUF469) ISU54_03440 PF04960 Glutaminase ISU54_03445 PF11101 Protein of unknown function (DUF2884) ISU54_03450 PF11101 Protein of unknown function (DUF2884) ISU54_03460 PF12146 Serine aminopeptidase, S33 ISU54_03460 PF16671 Actin cross-linking domain ISU54_03460 PF11713 Peptidase C80 family ISU54_03460 PF11647 Membrane Localization Domain ISU54_03460 PF07634 RtxA repeat ISU54_03465 PF04055 Radical SAM superfamily ISU54_03465 PF06969 HemN C-terminal domain ISU54_03470 PF01725 Ham1 family ISU54_03475 PF02594 Uncharacterised ACR, YggU family COG1872 ISU54_03480 PF02325 YGGT family ISU54_03485 PF14748 Pyrroline-5-carboxylate reductase dimerisation ISU54_03485 PF03807 NADP oxidoreductase coenzyme F420-dependent ISU54_03490 PF01168 Alanine racemase, N-terminal domain ISU54_03495 PF00437 Type II/IV secretion system protein ISU54_03500 PF04371 Porphyromonas-type peptidyl-arginine deiminase ISU54_03505 PF00795 Carbon-nitrogen hydrolase ISU54_03510 PF03652 Holliday junction resolvase ISU54_03515 PF02622 Uncharacterized ACR, COG1678 ISU54_03520 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain ISU54_03520 PF02951 Prokaryotic glutathione synthetase, N-terminal domain ISU54_03525 PF04452 RNA methyltransferase ISU54_03530 PF04231 Endonuclease I ISU54_03535 PF17283 SprT-like zinc ribbon domain ISU54_03535 PF10263 SprT-like family ISU54_03540 PF02773 S-adenosylmethionine synthetase, C-terminal domain ISU54_03540 PF02772 S-adenosylmethionine synthetase, central domain ISU54_03540 PF00438 S-adenosylmethionine synthetase, N-terminal domain ISU54_03545 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain ISU54_03545 PF17944 Arginine decarboxylase C-terminal helical extension ISU54_03545 PF17810 Arginine decarboxylase helical bundle domain ISU54_03560 PF01435 Peptidase family M48 ISU54_03565 PF02779 Transketolase, pyrimidine binding domain ISU54_03565 PF02780 Transketolase, C-terminal domain ISU54_03565 PF00456 Transketolase, thiamine diphosphate binding domain ISU54_03570 PF01797 Transposase IS200 like ISU54_03575 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain ISU54_03575 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain ISU54_03580 PF00162 Phosphoglycerate kinase ISU54_03585 PF01116 Fructose-bisphosphate aldolase class-II ISU54_03595 PF00924 Mechanosensitive ion channel ISU54_03595 PF05552 Conserved TM helix ISU54_03600 PF01810 LysE type translocator ISU54_03605 PF04402 Protein of unknown function (DUF541) ISU54_03610 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ISU54_03610 PF03466 LysR substrate binding domain ISU54_03615 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) ISU54_03620 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain ISU54_03620 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ISU54_03620 PF01842 ACT domain ISU54_03630 PF01812 5-formyltetrahydrofolate cyclo-ligase family ISU54_03640 PF05164 Cell division protein ZapA ISU54_03645 PF03695 Uncharacterised protein family (UPF0149) ISU54_03650 PF00557 Metallopeptidase family M24 ISU54_03650 PF05195 Aminopeptidase P, N-terminal domain ISU54_03655 PF01494 FAD binding domain ISU54_03660 PF01494 FAD binding domain ISU54_03665 PF08669 Glycine cleavage T-protein C-terminal barrel domain ISU54_03665 PF01571 Aminomethyltransferase folate-binding domain ISU54_03670 PF01597 Glycine cleavage H-protein ISU54_03675 PF02347 Glycine cleavage system P-protein ISU54_03705 PF03006 Haemolysin-III related ISU54_03715 PF01571 Aminomethyltransferase folate-binding domain ISU54_03720 PF03937 Flavinator of succinate dehydrogenase ISU54_03725 PF07254 Membrane-bound toxin component of toxin-antitoxin system ISU54_03730 PF00486 Transcriptional regulatory protein, C terminal ISU54_03730 PF00072 Response regulator receiver domain ISU54_03735 PF00512 His Kinase A (phospho-acceptor) domain ISU54_03735 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ISU54_03735 PF00672 HAMP domain ISU54_03740 PF06123 Inner membrane protein CreD ISU54_03745 PF00258 Flavodoxin ISU54_03750 PF02899 Phage integrase, N-terminal SAM-like domain ISU54_03750 PF00589 Phage integrase family ISU54_03755 PF13098 Thioredoxin-like domain ISU54_03755 PF10411 Disulfide bond isomerase protein N-terminus ISU54_03760 PF17768 RecJ OB domain ISU54_03760 PF02272 DHHA1 domain ISU54_03760 PF01368 DHH family ISU54_03770 PF01336 OB-fold nucleic acid binding domain ISU54_03770 PF00152 tRNA synthetases class II (D, K and N) ISU54_03780 PF14659 Phage integrase, N-terminal SAM-like domain ISU54_03780 PF00589 Phage integrase family ISU54_03780 PF13356 Arm DNA-binding domain ISU54_03800 PF15723 Motility quorum-sensing regulator, toxin of MqsA ISU54_03805 PF15731 Antitoxin component of bacterial toxin-antitoxin system, MqsA ISU54_03895 PF03551 Transcriptional regulator PadR-like family ISU54_03900 PF05708 Permuted papain-like amidase enzyme, YaeF/YiiX, C92 family ISU54_03910 PF13407 Periplasmic binding protein domain ISU54_03915 PF02653 Branched-chain amino acid transport system / permease component ISU54_03920 PF00005 ABC transporter ISU54_03925 PF17912 MalK OB fold domain ISU54_03925 PF00005 ABC transporter ISU54_03930 PF13416 Bacterial extracellular solute-binding protein ISU54_03935 PF00528 Binding-protein-dependent transport system inner membrane component ISU54_03940 PF00528 Binding-protein-dependent transport system inner membrane component ISU54_03945 PF07745 Glycosyl hydrolase family 53 ISU54_03950 PF02449 Beta-galactosidase ISU54_03950 PF08533 Beta-galactosidase C-terminal domain ISU54_03950 PF08532 Beta-galactosidase trimerisation domain ISU54_03955 PF02378 Phosphotransferase system, EIIC ISU54_03955 PF00367 phosphotransferase system, EIIB ISU54_03960 PF02264 LamB porin ISU54_03965 PF00356 Bacterial regulatory proteins, lacI family ISU54_03970 PF16338 Domain of unknown function (DUF4968) ISU54_03970 PF17137 Domain of unknown function (DUF5110) ISU54_03970 PF13802 Galactose mutarotase-like ISU54_03970 PF01055 Glycosyl hydrolases family 31 ISU54_03975 PF07690 Major Facilitator Superfamily ISU54_03980 PF00356 Bacterial regulatory proteins, lacI family ISU54_03990 PF01116 Fructose-bisphosphate aldolase class-II ISU54_04000 PF00884 Sulfatase ISU54_04005 PF13186 Iron-sulfur cluster-binding domain ISU54_04005 PF04055 Radical SAM superfamily ISU54_04010 PF07470 Glycosyl Hydrolase Family 88 ISU54_04020 PF01979 Amidohydrolase family ISU54_04025 PF03610 PTS system fructose IIA component ISU54_04030 PF03613 PTS system mannose/fructose/sorbose family IID component ISU54_04035 PF03609 PTS system sorbose-specific iic component ISU54_04040 PF03830 PTS system sorbose subfamily IIB component ISU54_04045 PF01380 SIS domain ISU54_04050 PF08013 Tagatose 6 phosphate kinase ISU54_04055 PF08220 DeoR-like helix-turn-helix domain ISU54_04055 PF00455 DeoR C terminal sensor domain ISU54_04060 PF00884 Sulfatase ISU54_04065 PF01797 Transposase IS200 like ISU54_04070 PF00665 Integrase core domain ISU54_04070 PF02796 Helix-turn-helix domain of resolvase ISU54_04075 PF01695 IstB-like ATP binding protein ISU54_04080 PF09093 Lyase, catalytic ISU54_04080 PF09092 Lyase, N terminal ISU54_04080 PF02884 Polysaccharide lyase family 8, C-terminal beta-sandwich domain ISU54_04080 PF02278 Polysaccharide lyase family 8, super-sandwich domain ISU54_04100 PF00484 Carbonic anhydrase ISU54_04115 PF00263 Bacterial type II and III secretion system protein ISU54_04115 PF03958 Bacterial type II/III secretion system short domain ISU54_04120 PF00437 Type II/IV secretion system protein ISU54_04130 PF08334 Type II secretion system (T2SS), protein G ISU54_04130 PF07963 Prokaryotic N-terminal methylation motif ISU54_04140 PF07963 Prokaryotic N-terminal methylation motif ISU54_04140 PF02501 Type II secretion system (T2SS), protein I ISU54_04145 PF11612 Type II secretion system (T2SS), protein J ISU54_04145 PF07963 Prokaryotic N-terminal methylation motif ISU54_04165 PF06750 Bacterial Peptidase A24 N-terminal domain ISU54_04165 PF01478 Type IV leader peptidase family ISU54_04185 PF00672 HAMP domain ISU54_04185 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ISU54_04185 PF02203 Tar ligand binding domain homologue ISU54_04200 PF03466 LysR substrate binding domain ISU54_04200 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ISU54_04205 PF07690 Major Facilitator Superfamily ISU54_04210 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ISU54_04210 PF03466 LysR substrate binding domain ISU54_04215 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain ISU54_04215 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain ISU54_04220 PF00356 Bacterial regulatory proteins, lacI family ISU54_04225 PF00384 Molybdopterin oxidoreductase ISU54_04225 PF01568 Molydopterin dinucleotide binding domain ISU54_04230 PF00501 AMP-binding enzyme ISU54_04230 PF01553 Acyltransferase ISU54_04230 PF13193 AMP-binding enzyme C-terminal domain ISU54_04235 PF07690 Major Facilitator Superfamily ISU54_04250 PF00248 Aldo/keto reductase family ISU54_04255 PF02976 DNA mismatch repair enzyme MutH ISU54_04260 PF00293 NUDIX domain ISU54_04265 PF01590 GAF domain ISU54_04265 PF05524 PEP-utilising enzyme, N-terminal ISU54_04265 PF00391 PEP-utilising enzyme, mobile domain ISU54_04265 PF02896 PEP-utilising enzyme, TIM barrel domain ISU54_04270 PF01790 Prolipoprotein diacylglyceryl transferase ISU54_04275 PF00303 Thymidylate synthase ISU54_04300 PF17946 RecC C-terminal domain ISU54_04305 PF00675 Insulinase (Peptidase family M16) ISU54_04305 PF16187 Middle or third domain of peptidase_M16 ISU54_04305 PF05193 Peptidase M16 inactive domain ISU54_04310 PF00580 UvrD/REP helicase N-terminal domain ISU54_04310 PF12705 PD-(D/E)XK nuclease superfamily ISU54_04310 PF13361 UvrD-like helicase C-terminal domain ISU54_04315 PF13538 UvrD-like helicase C-terminal domain ISU54_04320 PF00583 Acetyltransferase (GNAT) family ISU54_04320 PF00696 Amino acid kinase family ISU54_04325 PF01520 N-acetylmuramoyl-L-alanine amidase ISU54_04325 PF11741 AMIN domain ISU54_04340 PF06725 3D domain ISU54_04340 PF03562 MltA specific insert domain ISU54_04345 PF00899 ThiF family ISU54_04350 PF02657 Fe-S metabolism associated domain ISU54_04355 PF00266 Aminotransferase class-V ISU54_04365 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ISU54_04365 PF03466 LysR substrate binding domain ISU54_04370 PF04241 Protein of unknown function (DUF423) ISU54_04375 PF18125 RlmM ferredoxin-like domain ISU54_04375 PF01728 FtsJ-like methyltransferase ISU54_04380 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain ISU54_04380 PF01367 5'-3' exonuclease, C-terminal SAM fold ISU54_04385 PF01695 IstB-like ATP binding protein ISU54_04390 PF00665 Integrase core domain ISU54_04390 PF02796 Helix-turn-helix domain of resolvase ISU54_04395 PF11892 Domain of unknown function (DUF3412) ISU54_04395 PF03641 Possible lysine decarboxylase ISU54_04395 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases ISU54_04400 PF14489 QueF-like protein ISU54_04400 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term ISU54_04405 PF07348 Syd protein (SUKH-2) ISU54_04410 PF01797 Transposase IS200 like ISU54_04415 PF04287 tRNA pseudouridine synthase C ISU54_04420 PF00849 RNA pseudouridylate synthase ISU54_04425 PF00258 Flavodoxin ISU54_04430 PF11944 Protein of unknown function (DUF3461) ISU54_04435 PF14602 Hexapeptide repeat of succinyl-transferase ISU54_04435 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal ISU54_04435 PF00132 Bacterial transferase hexapeptide (six repeats) ISU54_04440 PF01909 Nucleotidyltransferase domain ISU54_04440 PF01966 HD domain ISU54_04440 PF08335 GlnD PII-uridylyltransferase ISU54_04440 PF01842 ACT domain ISU54_04445 PF00557 Metallopeptidase family M24 ISU54_04450 PF00318 Ribosomal protein S2 ISU54_04455 PF00889 Elongation factor TS ISU54_04460 PF00696 Amino acid kinase family ISU54_04465 PF01765 Ribosome recycling factor ISU54_04470 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase ISU54_04470 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain ISU54_04470 PF13288 DXP reductoisomerase C-terminal domain ISU54_04475 PF01255 Putative undecaprenyl diphosphate synthase ISU54_04485 PF02163 Peptidase family M50 ISU54_04485 PF17820 PDZ domain ISU54_04490 PF01103 Surface antigen ISU54_04490 PF07244 Surface antigen variable number repeat ISU54_04495 PF03938 Outer membrane protein (OmpH-like) ISU54_04500 PF00132 Bacterial transferase hexapeptide (six repeats) ISU54_04500 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD ISU54_04505 PF07977 FabA-like domain ISU54_04510 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 ISU54_04510 PF00132 Bacterial transferase hexapeptide (six repeats) ISU54_04515 PF02684 Lipid-A-disaccharide synthetase ISU54_04520 PF01351 Ribonuclease HII ISU54_04525 PF07733 Bacterial DNA polymerase III alpha NTPase domain ISU54_04525 PF01336 OB-fold nucleic acid binding domain ISU54_04525 PF17657 Bacterial DNA polymerase III alpha subunit finger domain ISU54_04525 PF14579 Helix-hairpin-helix motif ISU54_04525 PF02811 PHP domain ISU54_04530 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit ISU54_04535 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily ISU54_04540 PF01171 PP-loop family ISU54_04540 PF11734 TilS substrate C-terminal domain ISU54_04540 PF09179 TilS substrate binding domain ISU54_04545 PF00034 Cytochrome c ISU54_04550 PF07073 Modulator of Rho-dependent transcription termination (ROF) ISU54_04555 PF06786 Uncharacterised protein family (UPF0253) ISU54_04560 PF07152 YaeQ protein ISU54_04565 PF00472 RF-1 domain ISU54_04570 PF17185 NlpE C-terminal OB domain ISU54_04570 PF04170 NlpE N-terminal domain ISU54_04575 PF04073 Aminoacyl-tRNA editing domain ISU54_04575 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) ISU54_04575 PF03129 Anticodon binding domain ISU54_04580 PF18389 TrmO C-terminal domain ISU54_04580 PF01980 tRNA-methyltransferase O ISU54_04585 PF16358 RcsF lipoprotein ISU54_04590 PF03180 NLPA lipoprotein ISU54_04595 PF00528 Binding-protein-dependent transport system inner membrane component ISU54_04600 PF00005 ABC transporter ISU54_04600 PF09383 NIL domain ISU54_04635 PF00248 Aldo/keto reductase family ISU54_04645 PF03372 Endonuclease/Exonuclease/phosphatase family ISU54_04650 PF01464 Transglycosylase SLT domain ISU54_04650 PF01476 LysM domain ISU54_04655 PF00753 Metallo-beta-lactamase superfamily ISU54_04655 PF16123 Hydroxyacylglutathione hydrolase C-terminus ISU54_04660 PF08241 Methyltransferase domain ISU54_04665 PF00075 RNase H ISU54_04670 PF00929 Exonuclease ISU54_04680 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin ISU54_04690 PF01695 IstB-like ATP binding protein ISU54_04695 PF02796 Helix-turn-helix domain of resolvase ISU54_04695 PF00665 Integrase core domain ISU54_04705 PF05973 Phage derived protein Gp49-like (DUF891) ISU54_04755 PF00589 Phage integrase family ISU54_04755 PF13356 Arm DNA-binding domain ISU54_04760 PF01797 Transposase IS200 like ISU54_04770 PF01668 SmpB protein ISU54_04775 PF03364 Polyketide cyclase / dehydrase and lipid transport ISU54_04780 PF03658 RnfH family Ubiquitin ISU54_04785 PF04355 SmpA / OmlA family ISU54_04790 PF02463 RecF/RecN/SMC N terminal domain ISU54_04795 PF01513 ATP-NAD kinase ISU54_04800 PF01025 GrpE ISU54_04805 PF00285 Citrate synthase, C-terminal domain ISU54_04810 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit ISU54_04815 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit ISU54_04820 PF00890 FAD binding domain ISU54_04820 PF02910 Fumarate reductase flavoprotein C-term ISU54_04825 PF13085 2Fe-2S iron-sulfur cluster binding domain ISU54_04830 PF00676 Dehydrogenase E1 component ISU54_04830 PF16078 2-oxoglutarate dehydrogenase N-terminus ISU54_04830 PF16870 2-oxoglutarate dehydrogenase C-terminal ISU54_04830 PF02779 Transketolase, pyrimidine binding domain ISU54_04835 PF00364 Biotin-requiring enzyme ISU54_04835 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) ISU54_04835 PF02817 e3 binding domain ISU54_04840 PF08442 ATP-grasp domain ISU54_04840 PF00549 CoA-ligase ISU54_04845 PF00549 CoA-ligase ISU54_04845 PF02629 CoA binding domain ISU54_04850 PF01654 Cytochrome bd terminal oxidase subunit I ISU54_04855 PF02322 Cytochrome bd terminal oxidase subunit II ISU54_04860 PF08173 Membrane bound YbgT-like protein ISU54_04865 PF09600 Cyd operon protein YbgE (Cyd_oper_YbgE) ISU54_04870 PF03061 Thioesterase superfamily ISU54_04875 PF01618 MotA/TolQ/ExbB proton channel family ISU54_04880 PF02472 Biopolymer transport protein ExbD/TolR ISU54_04885 PF06519 TolA C-terminal ISU54_04885 PF06519 TolA C-terminal ISU54_04890 PF04052 TolB amino-terminal domain ISU54_04890 PF07676 WD40-like Beta Propeller Repeat ISU54_04895 PF00691 OmpA family ISU54_04900 PF16331 TolA binding protein trimerisation ISU54_04900 PF13174 Tetratricopeptide repeat ISU54_04920 PF02445 Quinolinate synthetase A protein ISU54_04925 PF04973 Nicotinamide mononucleotide transporter ISU54_04930 PF01545 Cation efflux family ISU54_04935 PF00793 DAHP synthetase I family ISU54_04940 PF00300 Histidine phosphatase superfamily (branch 1) ISU54_04950 PF01263 Aldose 1-epimerase ISU54_04960 PF00288 GHMP kinases N terminal domain ISU54_04960 PF10509 Galactokinase galactose-binding signature ISU54_04960 PF08544 GHMP kinases C terminal ISU54_04965 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain ISU54_04965 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain ISU54_04970 PF16363 GDP-mannose 4,6 dehydratase ISU54_04980 PF00005 ABC transporter ISU54_04985 PF03459 TOBE domain ISU54_04985 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ISU54_04990 PF10766 Multidrug efflux pump-associated protein AcrZ ISU54_05000 PF00528 Binding-protein-dependent transport system inner membrane component ISU54_05005 PF03459 TOBE domain ISU54_05005 PF00005 ABC transporter ISU54_05015 PF10282 Lactonase, 7-bladed beta-propeller ISU54_05020 PF00202 Aminotransferase class-III ISU54_05025 PF06968 Biotin and Thiamin Synthesis associated domain ISU54_05025 PF04055 Radical SAM superfamily ISU54_05030 PF00155 Aminotransferase class I and II ISU54_05035 PF08241 Methyltransferase domain ISU54_05045 PF09383 NIL domain ISU54_05045 PF00005 ABC transporter ISU54_05050 PF12344 Ultra-violet resistance protein B ISU54_05050 PF02151 UvrB/uvrC motif ISU54_05050 PF00271 Helicase conserved C-terminal domain ISU54_05050 PF04851 Type III restriction enzyme, res subunit ISU54_05050 PF17757 UvrB interaction domain ISU54_05055 PF09905 DNA-binding protein VF530 ISU54_05060 PF01933 Uncharacterised protein family UPF0052 ISU54_05065 PF06463 Molybdenum Cofactor Synthesis C ISU54_05065 PF04055 Radical SAM superfamily ISU54_05070 PF01967 MoaC family ISU54_05075 PF02597 ThiS family ISU54_05080 PF02391 MoaE protein ISU54_05085 PF01027 Inhibitor of apoptosis-promoting Bax1 ISU54_05090 PF01797 Transposase IS200 like ISU54_05100 PF01207 Dihydrouridine synthase (Dus) ISU54_05110 PF00768 D-alanyl-D-alanine carboxypeptidase ISU54_05115 PF01565 FAD binding domain ISU54_05115 PF09330 D-lactate dehydrogenase, membrane binding ISU54_05120 PF01928 CYTH domain ISU54_05125 PF01844 HNH endonuclease ISU54_05135 PF04226 Transglycosylase associated protein ISU54_05140 PF00005 ABC transporter ISU54_05150 PF00528 Binding-protein-dependent transport system inner membrane component ISU54_05155 PF00528 Binding-protein-dependent transport system inner membrane component ISU54_05160 PF07308 Protein of unknown function (DUF1456) ISU54_05165 PF00158 Sigma-54 interaction domain ISU54_05165 PF13188 PAS domain ISU54_05165 PF02954 Bacterial regulatory protein, Fis family ISU54_05170 PF02653 Branched-chain amino acid transport system / permease component ISU54_05175 PF02653 Branched-chain amino acid transport system / permease component ISU54_05180 PF00005 ABC transporter ISU54_05185 PF00005 ABC transporter ISU54_05200 PF00581 Rhodanese-like domain ISU54_05205 PF04069 Substrate binding domain of ABC-type glycine betaine transport system ISU54_05210 PF04069 Substrate binding domain of ABC-type glycine betaine transport system ISU54_05215 PF00528 Binding-protein-dependent transport system inner membrane component ISU54_05220 PF00005 ABC transporter ISU54_05225 PF00528 Binding-protein-dependent transport system inner membrane component ISU54_05230 PF13520 Amino acid permease ISU54_05235 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain ISU54_05235 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain ISU54_05235 PF01276 Orn/Lys/Arg decarboxylase, major domain ISU54_05245 PF00892 EamA-like transporter family ISU54_05250 PF00267 Gram-negative porin ISU54_05255 PF06733 DEAD_2 ISU54_05255 PF13307 Helicase C-terminal domain ISU54_05260 PF00199 Catalase ISU54_05260 PF06628 Catalase-related immune-responsive ISU54_05265 PF07437 YfaZ precursor ISU54_05270 PF03222 Tryptophan/tyrosine permease family ISU54_05275 PF00994 Probable molybdopterin binding domain ISU54_05280 PF03974 Ecotin ISU54_05285 PF00111 2Fe-2S iron-sulfur cluster binding domain ISU54_05290 PF00268 Ribonucleotide reductase, small chain ISU54_05295 PF02867 Ribonucleotide reductase, barrel domain ISU54_05295 PF00317 Ribonucleotide reductase, all-alpha domain ISU54_05295 PF03477 ATP cone domain ISU54_05305 PF03989 DNA gyrase C-terminal domain, beta-propeller ISU54_05305 PF00521 DNA gyrase/topoisomerase IV, subunit A ISU54_05310 PF09456 RcsC Alpha-Beta-Loop (ABL) ISU54_05310 PF00072 Response regulator receiver domain ISU54_05310 PF00512 His Kinase A (phospho-acceptor) domain ISU54_05310 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ISU54_05315 PF00072 Response regulator receiver domain ISU54_05315 PF00196 Bacterial regulatory proteins, luxR family ISU54_05320 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ISU54_05320 PF16359 RcsD-ABL domain ISU54_05320 PF01627 Hpt domain ISU54_05325 PF16359 RcsD-ABL domain ISU54_05325 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ISU54_05325 PF01627 Hpt domain ISU54_05330 PF07690 Major Facilitator Superfamily ISU54_05335 PF00267 Gram-negative porin ISU54_05340 PF01797 Transposase IS200 like ISU54_05355 PF00144 Beta-lactamase ISU54_05365 PF12706 Beta-lactamase superfamily domain ISU54_05370 PF00672 HAMP domain ISU54_05370 PF02743 Cache domain ISU54_05370 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ISU54_05375 PF01278 Omptin family ISU54_05380 PF06183 DinI-like family ISU54_05385 PF01381 Helix-turn-helix ISU54_05385 PF00717 Peptidase S24-like ISU54_05390 PF06530 Phage antitermination protein Q ISU54_05395 PF07005 Sugar-binding N-terminal domain ISU54_05395 PF17042 Nucleotide-binding C-terminal domain ISU54_05405 PF00455 DeoR C terminal sensor domain ISU54_05405 PF08220 DeoR-like helix-turn-helix domain ISU54_05410 PF01261 Xylose isomerase-like TIM barrel ISU54_05430 PF04984 Phage tail sheath protein subtilisin-like domain ISU54_05430 PF17482 Phage tail sheath C-terminal domain ISU54_05470 PF04865 Baseplate J-like protein ISU54_05485 PF07484 Phage Tail Collar Domain ISU54_05490 PF01418 Helix-turn-helix domain, rpiR family ISU54_05490 PF01380 SIS domain ISU54_05495 PF00232 Glycosyl hydrolase family 1 ISU54_05515 PF05638 Type VI secretion system effector, Hcp ISU54_05530 PF00884 Sulfatase ISU54_05530 PF11893 Domain of unknown function (DUF3413) ISU54_05535 PF07208 Protein of unknown function (DUF1414) ISU54_05540 PF04245 37-kD nucleoid-associated bacterial protein ISU54_05545 PF01797 Transposase IS200 like ISU54_05550 PF01386 Ribosomal L25p family ISU54_05555 PF04851 Type III restriction enzyme, res subunit ISU54_05555 PF00271 Helicase conserved C-terminal domain ISU54_05560 PF00849 RNA pseudouridylate synthase ISU54_05560 PF01479 S4 domain ISU54_05565 PF07690 Major Facilitator Superfamily ISU54_05570 PF13989 YejG-like protein ISU54_05575 PF08352 Oligopeptide/dipeptide transporter, C-terminal region ISU54_05575 PF00005 ABC transporter ISU54_05580 PF00528 Binding-protein-dependent transport system inner membrane component ISU54_05580 PF12911 N-terminal TM domain of oligopeptide transport permease C ISU54_05585 PF00528 Binding-protein-dependent transport system inner membrane component ISU54_05590 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle ISU54_05595 PF00563 EAL domain ISU54_05595 PF12792 CSS motif domain associated with EAL ISU54_05600 PF00877 NlpC/P60 family ISU54_05605 PF01569 PAP2 superfamily ISU54_05610 PF02492 CobW/HypB/UreG, nucleotide-binding domain ISU54_05610 PF07683 Cobalamin synthesis protein cobW C-terminal domain ISU54_05615 PF00392 Bacterial regulatory proteins, gntR family ISU54_05615 PF07729 FCD domain ISU54_05620 PF01232 Mannitol dehydrogenase Rossmann domain ISU54_05620 PF08125 Mannitol dehydrogenase C-terminal domain ISU54_05625 PF03786 D-mannonate dehydratase (UxuA) ISU54_05630 PF09285 Elongation factor P, C-terminal ISU54_05630 PF01132 Elongation factor P (EF-P) OB domain ISU54_05630 PF08207 Elongation factor P (EF-P) KOW-like domain ISU54_05635 PF03222 Tryptophan/tyrosine permease family ISU54_05640 PF03692 Putative zinc- or iron-chelating domain ISU54_05650 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ISU54_05650 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain ISU54_05650 PF01842 ACT domain ISU54_05660 PF00171 Aldehyde dehydrogenase family ISU54_05665 PF02782 FGGY family of carbohydrate kinases, C-terminal domain ISU54_05665 PF00370 FGGY family of carbohydrate kinases, N-terminal domain ISU54_05670 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) ISU54_05680 PF00005 ABC transporter ISU54_05685 PF02653 Branched-chain amino acid transport system / permease component ISU54_05690 PF00293 NUDIX domain ISU54_05695 PF00381 PTS HPr component phosphorylation site ISU54_05695 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 ISU54_05700 PF00294 pfkB family carbohydrate kinase ISU54_05705 PF02378 Phosphotransferase system, EIIC ISU54_05705 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit ISU54_05710 PF00486 Transcriptional regulatory protein, C terminal ISU54_05715 PF17550 Family of unknown function ISU54_05725 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain ISU54_05725 PF02753 Pili assembly chaperone PapD, C-terminal domain ISU54_05730 PF00577 Outer membrane usher protein ISU54_05730 PF13954 PapC N-terminal domain ISU54_05730 PF13953 PapC C-terminal domain ISU54_05735 PF01261 Xylose isomerase-like TIM barrel ISU54_05740 PF03601 Conserved hypothetical protein 698 ISU54_05745 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ISU54_05745 PF03466 LysR substrate binding domain ISU54_05750 PF00324 Amino acid permease ISU54_05760 PF01032 FecCD transport family ISU54_05765 PF00005 ABC transporter ISU54_05770 PF07715 TonB-dependent Receptor Plug Domain ISU54_05770 PF00593 TonB dependent receptor ISU54_05775 PF13417 Glutathione S-transferase, N-terminal domain ISU54_05775 PF00043 Glutathione S-transferase, C-terminal domain ISU54_05790 PF03180 NLPA lipoprotein ISU54_05795 PF09383 NIL domain ISU54_05795 PF00005 ABC transporter ISU54_05800 PF00528 Binding-protein-dependent transport system inner membrane component ISU54_05805 PF00768 D-alanyl-D-alanine carboxypeptidase ISU54_05805 PF07943 Penicillin-binding protein 5, C-terminal domain ISU54_05815 PF00455 DeoR C terminal sensor domain ISU54_05815 PF08220 DeoR-like helix-turn-helix domain ISU54_05820 PF01791 DeoC/LacD family aldolase ISU54_05825 PF01569 PAP2 superfamily ISU54_05835 PF06826 Predicted Permease Membrane Region ISU54_05835 PF02080 TrkA-C domain ISU54_05840 PF00462 Glutaredoxin ISU54_05845 PF07214 Protein of unknown function (DUF1418) ISU54_05850 PF10722 Putative bacterial sensory transduction regulator ISU54_05855 PF13416 Bacterial extracellular solute-binding protein ISU54_05860 PF08402 TOBE domain ISU54_05860 PF00005 ABC transporter ISU54_05865 PF00528 Binding-protein-dependent transport system inner membrane component ISU54_05870 PF00528 Binding-protein-dependent transport system inner membrane component ISU54_05875 PF10767 Protein of unknown function (DUF2593) ISU54_05880 PF05958 tRNA (Uracil-5-)-methyltransferase ISU54_05885 PF00497 Bacterial extracellular solute-binding proteins, family 3 ISU54_05910 PF01032 FecCD transport family ISU54_05915 PF01032 FecCD transport family ISU54_05920 PF00005 ABC transporter ISU54_05925 PF03059 Nicotianamine synthase protein ISU54_05930 PF10100 Staphylopine dehydrogenase ISU54_05935 PF00892 EamA-like transporter family ISU54_05945 PF00528 Binding-protein-dependent transport system inner membrane component ISU54_05950 PF00528 Binding-protein-dependent transport system inner membrane component ISU54_05955 PF00497 Bacterial extracellular solute-binding proteins, family 3 ISU54_05960 PF00005 ABC transporter ISU54_05965 PF01817 Chorismate mutase type II ISU54_05970 PF12883 Protein of unknown function (DUF3828) ISU54_05975 PF01370 NAD dependent epimerase/dehydratase family ISU54_05980 PF11066 Protein of unknown function (DUF2867) ISU54_05980 PF13460 NAD(P)H-binding ISU54_05985 PF01212 Beta-eliminating lyase ISU54_05995 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain ISU54_05995 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain ISU54_05995 PF00205 Thiamine pyrophosphate enzyme, central domain ISU54_06000 PF00970 Oxidoreductase FAD-binding domain ISU54_06000 PF00111 2Fe-2S iron-sulfur cluster binding domain ISU54_06000 PF00175 Oxidoreductase NAD-binding domain ISU54_06005 PF03063 Prismane/CO dehydrogenase family ISU54_06010 PF03956 Lysine exporter LysO ISU54_06015 PF11398 Protein of unknown function (DUF2813) ISU54_06020 PF04393 Protein of unknown function (DUF535) ISU54_06025 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion ISU54_06030 PF02687 FtsX-like permease family ISU54_06030 PF12704 MacB-like periplasmic core domain ISU54_06030 PF00005 ABC transporter ISU54_06035 PF00313 'Cold-shock' DNA-binding domain ISU54_06040 PF02617 ATP-dependent Clp protease adaptor protein ClpS ISU54_06045 PF10431 C-terminal, D2-small domain, of ClpB protein ISU54_06045 PF00004 ATPase family associated with various cellular activities (AAA) ISU54_06045 PF07724 AAA domain (Cdc48 subfamily) ISU54_06045 PF17871 AAA lid domain ISU54_06045 PF02861 Clp amino terminal domain, pathogenicity island component ISU54_06050 PF01797 Transposase IS200 like ISU54_06055 PF01176 Translation initiation factor 1A / IF-1 ISU54_06060 PF03588 Leucyl/phenylalanyl-tRNA protein transferase ISU54_06065 PF00005 ABC transporter ISU54_06065 PF00664 ABC transporter transmembrane region ISU54_06070 PF00664 ABC transporter transmembrane region ISU54_06070 PF00005 ABC transporter ISU54_06075 PF07992 Pyridine nucleotide-disulphide oxidoreductase ISU54_06080 PF01037 Lrp/AsnC ligand binding domain ISU54_06085 PF09397 Ftsk gamma domain ISU54_06085 PF01580 FtsK/SpoIIIE family ISU54_06085 PF13491 4TM region of DNA translocase FtsK/SpoIIIE ISU54_06085 PF17854 FtsK alpha domain ISU54_06090 PF03548 Outer membrane lipoprotein carrier protein LolA ISU54_06095 PF12002 MgsA AAA+ ATPase C terminal ISU54_06095 PF16193 AAA C-terminal domain ISU54_06095 PF00004 ATPase family associated with various cellular activities (AAA) ISU54_06100 PF02403 Seryl-tRNA synthetase N-terminal domain ISU54_06100 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) ISU54_06110 PF01695 IstB-like ATP binding protein ISU54_06115 PF00665 Integrase core domain ISU54_06115 PF02796 Helix-turn-helix domain of resolvase ISU54_06125 PF04055 Radical SAM superfamily ISU54_06135 PF02901 Pyruvate formate lyase-like ISU54_06135 PF01228 Glycine radical ISU54_06140 PF01226 Formate/nitrite transporter ISU54_06145 PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding ISU54_06145 PF18381 YcaO cyclodehydratase C-terminal domain ISU54_06150 PF17763 Glutaminase/Asparaginase C-terminal domain ISU54_06150 PF00710 Asparaginase, N-terminal ISU54_06155 PF05662 Coiled stalk of trimeric autotransporter adhesin ISU54_06155 PF05662 Coiled stalk of trimeric autotransporter adhesin ISU54_06155 PF05658 Head domain of trimeric autotransporter adhesin ISU54_06155 PF13018 Extended Signal Peptide of Type V secretion system ISU54_06155 PF03895 YadA-like membrane anchor domain ISU54_06155 PF13018 Extended Signal Peptide of Type V secretion system ISU54_06155 PF05658 Head domain of trimeric autotransporter adhesin ISU54_06155 PF03895 YadA-like membrane anchor domain ISU54_06165 PF00266 Aminotransferase class-V ISU54_06170 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) ISU54_06175 PF02224 Cytidylate kinase ISU54_06180 PF00575 S1 RNA binding domain ISU54_06185 PF00216 Bacterial DNA-binding protein ISU54_06190 PF03772 Competence protein ISU54_06190 PF00753 Metallo-beta-lactamase superfamily ISU54_06195 PF00664 ABC transporter transmembrane region ISU54_06195 PF00005 ABC transporter ISU54_06200 PF02606 Tetraacyldisaccharide-1-P 4'-kinase ISU54_06205 PF07063 Domain of unknown function (DUF1338) ISU54_06210 PF00313 'Cold-shock' DNA-binding domain ISU54_06215 PF03966 Trm112p-like protein ISU54_06220 PF02348 Cytidylyltransferase ISU54_06225 PF01636 Phosphotransferase enzyme family ISU54_06230 PF13847 Methyltransferase domain ISU54_06235 PF17192 MukF middle domain ISU54_06235 PF03882 MukF winged-helix domain ISU54_06235 PF17193 MukF C-terminal domain ISU54_06240 PF04288 MukE-like family ISU54_06245 PF04310 MukB N-terminal ISU54_06245 PF16330 MukB hinge domain ISU54_06250 PF01797 Transposase IS200 like ISU54_06255 PF03734 L,D-transpeptidase catalytic domain ISU54_06255 PF01471 Putative peptidoglycan binding domain ISU54_06260 PF05951 Bacterial protein of unknown function (DUF882) ISU54_06265 PF00753 Metallo-beta-lactamase superfamily ISU54_06275 PF00155 Aminotransferase class I and II ISU54_06280 PF00267 Gram-negative porin ISU54_06285 PF01336 OB-fold nucleic acid binding domain ISU54_06285 PF00152 tRNA synthetases class II (D, K and N) ISU54_06290 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family ISU54_06290 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain ISU54_06295 PF01433 Peptidase family M1 domain ISU54_06295 PF17432 Domain of unknown function (DUF3458_C) ARM repeats ISU54_06295 PF11940 Domain of unknown function (DUF3458) Ig-like fold ISU54_06300 PF01180 Dihydroorotate dehydrogenase ISU54_06305 PF07126 Cell-division protein ZapC ISU54_06310 PF03473 MOSC domain ISU54_06310 PF03476 MOSC N-terminal beta barrel domain ISU54_06310 PF00111 2Fe-2S iron-sulfur cluster binding domain ISU54_06315 PF10672 S-adenosylmethionine-dependent methyltransferase ISU54_06315 PF02926 THUMP domain ISU54_06315 PF01170 Putative RNA methylase family UPF0020 ISU54_06320 PF00005 ABC transporter ISU54_06320 PF16326 ABC transporter C-terminal domain ISU54_06320 PF12848 ABC transporter ISU54_06325 PF04403 Paraquat-inducible protein A ISU54_06330 PF02470 MlaD protein ISU54_06335 PF03886 ABC-type transport auxiliary lipoprotein component ISU54_06340 PF04957 Ribosome modulation factor ISU54_06345 PF01797 Transposase IS200 like ISU54_06355 PF01695 IstB-like ATP binding protein ISU54_06360 PF02796 Helix-turn-helix domain of resolvase ISU54_06360 PF00665 Integrase core domain ISU54_06375 PF07977 FabA-like domain ISU54_06380 PF13654 AAA domain ISU54_06380 PF05362 Lon protease (S16) C-terminal proteolytic domain ISU54_06385 PF06303 MatP N-terminal domain ISU54_06385 PF17414 MatP C-terminal ribbon-helix-helix domain ISU54_06390 PF01797 Transposase IS200 like ISU54_06395 PF00691 OmpA family ISU54_06395 PF01389 OmpA-like transmembrane domain ISU54_06400 PF03846 Cell division inhibitor SulA ISU54_06405 PF04994 TfoX C-terminal domain ISU54_06405 PF04993 TfoX N-terminal domain ISU54_06410 PF12805 FUSC-like inner membrane protein yccS ISU54_06415 PF03733 Inner membrane component domain ISU54_06420 PF12462 DNA helicase IV / RNA helicase N terminal ISU54_06420 PF13361 UvrD-like helicase C-terminal domain ISU54_06420 PF00580 UvrD/REP helicase N-terminal domain ISU54_06425 PF02142 MGS-like domain ISU54_06430 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) ISU54_06435 PF13380 CoA binding domain ISU54_06440 PF08755 Hemimethylated DNA-binding protein YccV like ISU54_06445 PF17785 PUA-like domain ISU54_06445 PF10672 S-adenosylmethionine-dependent methyltransferase ISU54_06450 PF00708 Acylphosphatase ISU54_06455 PF04358 DsrC like protein ISU54_06475 PF08031 Berberine and berberine like ISU54_06475 PF01565 FAD binding domain ISU54_06490 PF07977 FabA-like domain ISU54_06495 PF00109 Beta-ketoacyl synthase, N-terminal domain ISU54_06495 PF02801 Beta-ketoacyl synthase, C-terminal domain ISU54_06505 PF01154 Hydroxymethylglutaryl-coenzyme A synthase N terminal ISU54_06505 PF08540 Hydroxymethylglutaryl-coenzyme A synthase C terminal ISU54_06515 PF00378 Enoyl-CoA hydratase/isomerase ISU54_06530 PF00550 Phosphopantetheine attachment site ISU54_06535 PF00698 Acyl transferase domain ISU54_06545 PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath ISU54_06560 PF05736 OprF membrane domain ISU54_06560 PF00691 OmpA family ISU54_06570 PF00004 ATPase family associated with various cellular activities (AAA) ISU54_06570 PF10431 C-terminal, D2-small domain, of ClpB protein ISU54_06570 PF17871 AAA lid domain ISU54_06570 PF07724 AAA domain (Cdc48 subfamily) ISU54_06575 PF04717 Type VI secretion system, phage-baseplate injector ISU54_06575 PF13296 Putative type VI secretion system Rhs element Vgr ISU54_06575 PF10106 Uncharacterized protein conserved in bacteria (DUF2345) ISU54_06665 PF00005 ABC transporter ISU54_06665 PF12848 ABC transporter ISU54_06675 PF00872 Transposase, Mutator family ISU54_06680 PF00899 ThiF family ISU54_06685 PF00994 Probable molybdopterin binding domain ISU54_06685 PF03453 MoeA N-terminal region (domain I and II) ISU54_06685 PF03454 MoeA C-terminal region (domain IV) ISU54_06695 PF00005 ABC transporter ISU54_06700 PF13533 Biotin-lipoyl like ISU54_06715 PF00756 Putative esterase ISU54_06720 PF08240 Alcohol dehydrogenase GroES-like domain ISU54_06720 PF00107 Zinc-binding dehydrogenase ISU54_06725 PF03466 LysR substrate binding domain ISU54_06725 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ISU54_06730 PF06779 Uncharacterised MFS-type transporter YbfB ISU54_06735 PF01227 GTP cyclohydrolase I ISU54_06740 PF04235 Protein of unknown function (DUF418) ISU54_06745 PF13407 Periplasmic binding protein domain ISU54_06750 PF00005 ABC transporter ISU54_06755 PF02653 Branched-chain amino acid transport system / permease component ISU54_06760 PF02698 DUF218 domain ISU54_06765 PF03949 Malic enzyme, NAD binding domain ISU54_06765 PF00390 Malic enzyme, N-terminal domain ISU54_06770 PF08211 Cytidine and deoxycytidylate deaminase zinc-binding region ISU54_06770 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region ISU54_06775 PF04172 LrgB-like family ISU54_06780 PF03788 LrgA family ISU54_06785 PF07690 Major Facilitator Superfamily ISU54_06805 PF01797 Transposase IS200 like ISU54_06810 PF01588 Putative tRNA binding domain ISU54_06810 PF09334 tRNA synthetases class I (M) ISU54_06815 PF10609 NUBPL iron-transfer P-loop NTPase ISU54_06820 PF00485 Phosphoribulokinase / Uridine kinase family ISU54_06825 PF00692 dUTPase ISU54_06830 PF05170 AsmA family ISU54_06835 PF00571 CBS domain ISU54_06835 PF03741 Integral membrane protein TerC family ISU54_06835 PF03471 Transporter associated domain ISU54_06840 PF11575 FhuF 2Fe-2S C-terminal domain ISU54_06840 PF06276 Ferric iron reductase FhuF-like transporter ISU54_06845 PF00282 Pyridoxal-dependent decarboxylase conserved domain ISU54_06850 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) ISU54_06860 PF04183 IucA / IucC family ISU54_06860 PF06276 Ferric iron reductase FhuF-like transporter ISU54_06865 PF00005 ABC transporter ISU54_06870 PF01032 FecCD transport family ISU54_06875 PF01032 FecCD transport family ISU54_06880 PF01497 Periplasmic binding protein ISU54_06885 PF07715 TonB-dependent Receptor Plug Domain ISU54_06885 PF00593 TonB dependent receptor ISU54_06885 PF07660 Secretin and TonB N terminus short domain ISU54_06895 PF00483 Nucleotidyl transferase ISU54_06900 PF00483 Nucleotidyl transferase ISU54_06905 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase ISU54_06905 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain ISU54_06910 PF01502 Phosphoribosyl-AMP cyclohydrolase ISU54_06910 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase ISU54_06915 PF00977 Histidine biosynthesis protein ISU54_06920 PF00977 Histidine biosynthesis protein ISU54_06925 PF00117 Glutamine amidotransferase class-I ISU54_06930 PF00475 Imidazoleglycerol-phosphate dehydratase ISU54_06935 PF00155 Aminotransferase class I and II ISU54_06940 PF00815 Histidinol dehydrogenase ISU54_06945 PF08029 HisG, C-terminal domain ISU54_06945 PF01634 ATP phosphoribosyltransferase ISU54_06955 PF01370 NAD dependent epimerase/dehydratase family ISU54_06970 PF02653 Branched-chain amino acid transport system / permease component ISU54_06975 PF00005 ABC transporter ISU54_06980 PF00005 ABC transporter ISU54_06985 PF00465 Iron-containing alcohol dehydrogenase ISU54_06990 PF13520 Amino acid permease ISU54_07000 PF00929 Exonuclease ISU54_07000 PF08411 Exonuclease C-terminal ISU54_07010 PF04363 Protein of unknown function (DUF496) ISU54_07015 PF00872 Transposase, Mutator family ISU54_07020 PF09134 Invasin, domain 3 ISU54_07020 PF11924 Inverse autotransporter, beta-domain ISU54_07020 PF02369 Bacterial Ig-like domain (group 1) ISU54_07025 PF07690 Major Facilitator Superfamily ISU54_07030 PF04134 Protein of unknown function, DUF393 ISU54_07040 PF01557 Fumarylacetoacetate (FAA) hydrolase family ISU54_07045 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain ISU54_07045 PF13378 Enolase C-terminal domain-like ISU54_07050 PF01070 FMN-dependent dehydrogenase ISU54_07055 PF00764 Arginosuccinate synthase ISU54_07060 PF01554 MatE ISU54_07070 PF01522 Polysaccharide deacetylase ISU54_07080 PF09831 Uncharacterized protein conserved in bacteria (DUF2058) ISU54_07090 PF00072 Response regulator receiver domain ISU54_07090 PF00196 Bacterial regulatory proteins, luxR family ISU54_07095 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component ISU54_07105 PF03480 Bacterial extracellular solute-binding protein, family 7 ISU54_07110 PF17837 4'-phosphopantetheinyl transferase N-terminal domain ISU54_07110 PF01648 4'-phosphopantetheinyl transferase superfamily ISU54_07120 PF16875 Glycosyl hydrolase family 36 N-terminal domain ISU54_07120 PF16874 Glycosyl hydrolase family 36 C-terminal domain ISU54_07125 PF01306 LacY proton/sugar symporter ISU54_07130 PF00872 Transposase, Mutator family ISU54_07140 PF02796 Helix-turn-helix domain of resolvase ISU54_07140 PF00665 Integrase core domain ISU54_07145 PF01695 IstB-like ATP binding protein ISU54_07150 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family ISU54_07150 PF00356 Bacterial regulatory proteins, lacI family ISU54_07160 PF06167 Glucose-regulated metallo-peptidase M90 ISU54_07175 PF00664 ABC transporter transmembrane region ISU54_07175 PF00005 ABC transporter ISU54_07185 PF12833 Helix-turn-helix domain ISU54_07190 PF10964 Protein of unknown function (DUF2766) ISU54_07195 PF13996 YobH-like protein ISU54_07200 PF13998 MgrB protein ISU54_07205 PF13974 YebO-like protein ISU54_07220 PF00324 Amino acid permease ISU54_07225 PF07017 Antimicrobial peptide resistance and lipid A acylation protein PagP ISU54_07230 PF10736 Protein of unknown function (DUF2627) ISU54_07235 PF00313 'Cold-shock' DNA-binding domain ISU54_07240 PF02578 Multi-copper polyphenol oxidoreductase laccase ISU54_07245 PF13847 Methyltransferase domain ISU54_07260 PF00593 TonB dependent receptor ISU54_07260 PF07715 TonB-dependent Receptor Plug Domain ISU54_07265 PF02659 Putative manganese efflux pump ISU54_07270 PF06173 Protein of unknown function (DUF986) ISU54_07275 PF03613 PTS system mannose/fructose/sorbose family IID component ISU54_07280 PF03609 PTS system sorbose-specific iic component ISU54_07285 PF03610 PTS system fructose IIA component ISU54_07285 PF03830 PTS system sorbose subfamily IIB component ISU54_07290 PF03741 Integral membrane protein TerC family ISU54_07290 PF03471 Transporter associated domain ISU54_07295 PF01047 MarR family ISU54_07300 PF01557 Fumarylacetoacetate (FAA) hydrolase family ISU54_07305 PF01557 Fumarylacetoacetate (FAA) hydrolase family ISU54_07310 PF00171 Aldehyde dehydrogenase family ISU54_07315 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase ISU54_07320 PF02962 5-carboxymethyl-2-hydroxymuconate isomerase ISU54_07325 PF01557 Fumarylacetoacetate (FAA) hydrolase family ISU54_07330 PF03328 HpcH/HpaI aldolase/citrate lyase family ISU54_07335 PF07690 Major Facilitator Superfamily ISU54_07340 PF03241 4-hydroxyphenylacetate 3-hydroxylase C terminal ISU54_07340 PF11794 4-hydroxyphenylacetate 3-hydroxylase N terminal ISU54_07345 PF01613 Flavin reductase like domain ISU54_07350 PF03313 Serine dehydratase alpha chain ISU54_07350 PF03315 Serine dehydratase beta chain ISU54_07355 PF00293 NUDIX domain ISU54_07360 PF04715 Anthranilate synthase component I, N terminal region ISU54_07360 PF00425 chorismate binding enzyme ISU54_07365 PF03701 Uncharacterised protein family (UPF0181) ISU54_07370 PF02222 ATP-grasp domain ISU54_07375 PF03880 DbpA RNA binding domain ISU54_07375 PF00270 DEAD/DEAH box helicase ISU54_07375 PF00271 Helicase conserved C-terminal domain ISU54_07380 PF07130 YebG protein ISU54_07385 PF04266 ASCH domain ISU54_07390 PF13995 YebF-like protein ISU54_07395 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain ISU54_07395 PF00326 Prolyl oligopeptidase family ISU54_07400 PF00561 alpha/beta hydrolase fold ISU54_07405 PF06440 DNA polymerase III, theta subunit ISU54_07410 PF00210 Ferritin-like domain ISU54_07415 PF04234 CopC domain ISU54_07425 PF10709 Protein of unknown function (DUF2511) ISU54_07440 PF01312 FlhB HrpN YscU SpaS Family ISU54_07445 PF00771 FHIPEP family ISU54_07450 PF06366 Flagellar protein FlhE ISU54_07460 PF01797 Transposase IS200 like ISU54_07470 PF05130 FlgN protein ISU54_07475 PF04316 Anti-sigma-28 factor, FlgM ISU54_07480 PF13144 Chaperone for flagella basal body P-ring formation ISU54_07480 PF17656 FlgA N-terminal domain ISU54_07485 PF00460 Flagella basal body rod protein ISU54_07490 PF06429 Flagellar basal body rod FlgEFG protein C-terminal ISU54_07490 PF00460 Flagella basal body rod protein ISU54_07495 PF13861 FlgD Tudor-like domain ISU54_07495 PF03963 Flagellar hook capping protein - N-terminal region ISU54_07495 PF13860 FlgD Ig-like domain ISU54_07500 PF06429 Flagellar basal body rod FlgEFG protein C-terminal ISU54_07500 PF00460 Flagella basal body rod protein ISU54_07500 PF07559 Flagellar basal body protein FlaE ISU54_07515 PF02107 Flagellar L-ring protein ISU54_07520 PF02119 Flagellar P-ring protein ISU54_07525 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase ISU54_07525 PF10135 Rod binding protein ISU54_07530 PF00460 Flagella basal body rod protein ISU54_07530 PF06429 Flagellar basal body rod FlgEFG protein C-terminal ISU54_07535 PF00669 Bacterial flagellin N-terminal helical region ISU54_07540 PF04198 Putative sugar-binding domain ISU54_07545 PF00596 Class II Aldolase and Adducin N-terminal domain ISU54_07550 PF02653 Branched-chain amino acid transport system / permease component ISU54_07555 PF13407 Periplasmic binding protein domain ISU54_07560 PF00005 ABC transporter ISU54_07565 PF02653 Branched-chain amino acid transport system / permease component ISU54_07570 PF00294 pfkB family carbohydrate kinase ISU54_07585 PF01311 Bacterial export proteins, family 1 ISU54_07590 PF01313 Bacterial export proteins, family 3 ISU54_07595 PF00813 FliP family ISU54_07600 PF04347 Flagellar biosynthesis protein, FliO ISU54_07605 PF16973 Flagellar motor switch protein FliN N-terminal ISU54_07605 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term ISU54_07610 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term ISU54_07610 PF02154 Flagellar motor switch protein FliM ISU54_07615 PF03748 Flagellar basal body-associated protein FliL ISU54_07620 PF02120 Flagellar hook-length control protein FliK ISU54_07625 PF02050 Flagellar FliJ protein ISU54_07630 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain ISU54_07630 PF18269 T3SS EscN ATPase C-terminal domain ISU54_07635 PF02108 Flagellar assembly protein FliH ISU54_07640 PF14841 FliG middle domain ISU54_07640 PF01706 FliG C-terminal domain ISU54_07640 PF14842 FliG N-terminal domain ISU54_07645 PF01514 Secretory protein of YscJ/FliF family ISU54_07645 PF08345 Flagellar M-ring protein C-terminal ISU54_07650 PF02049 Flagellar hook-basal body complex protein FliE ISU54_07670 PF00730 HhH-GPD superfamily base excision DNA repair protein ISU54_07675 PF01966 HD domain ISU54_07680 PF00672 HAMP domain ISU54_07680 PF02743 Cache domain ISU54_07680 PF00211 Adenylate and Guanylate cyclase catalytic domain ISU54_07685 PF12833 Helix-turn-helix domain ISU54_07690 PF05400 Flagellar protein FliT ISU54_07695 PF02561 Flagellar protein FliS ISU54_07700 PF02465 Flagellar hook-associated protein 2 N-terminus ISU54_07700 PF07195 Flagellar hook-associated protein 2 C-terminus ISU54_07700 PF07196 Flagellin hook IN motif ISU54_07705 PF00669 Bacterial flagellin N-terminal helical region ISU54_07705 PF00700 Bacterial flagellin C-terminal helical region ISU54_07705 PF08884 Flagellin D3 domain ISU54_07710 PF04539 Sigma-70 region 3 ISU54_07710 PF04542 Sigma-70 region 2 ISU54_07710 PF04545 Sigma-70, region 4 ISU54_07715 PF02899 Phage integrase, N-terminal SAM-like domain ISU54_07720 PF00291 Pyridoxal-phosphate dependent enzyme ISU54_07725 PF00497 Bacterial extracellular solute-binding proteins, family 3 ISU54_07730 PF00528 Binding-protein-dependent transport system inner membrane component ISU54_07735 PF00005 ABC transporter ISU54_07750 PF18327 Proline utilization A proline dehydrogenase N-terminal domain ISU54_07750 PF01619 Proline dehydrogenase ISU54_07750 PF00171 Aldehyde dehydrogenase family ISU54_07750 PF14850 DNA-binding domain of Proline dehydrogenase ISU54_07760 PF00474 Sodium:solute symporter family ISU54_07765 PF03239 Iron permease FTR1 family ISU54_07770 PF13473 Cupredoxin-like domain ISU54_07770 PF09375 Imelysin ISU54_07775 PF04261 Dyp-type peroxidase family ISU54_07780 PF03358 NADPH-dependent FMN reductase ISU54_07785 PF01344 Kelch motif ISU54_07790 PF00324 Amino acid permease ISU54_07800 PF13505 Outer membrane protein beta-barrel domain ISU54_07810 PF06942 GlpM protein ISU54_07815 PF10769 Protein of unknown function (DUF2594) ISU54_07820 PF00196 Bacterial regulatory proteins, luxR family ISU54_07820 PF00072 Response regulator receiver domain ISU54_07825 PF01541 GIY-YIG catalytic domain ISU54_07825 PF02151 UvrB/uvrC motif ISU54_07825 PF08459 UvrC Helix-hairpin-helix N-terminal ISU54_07830 PF01066 CDP-alcohol phosphatidyltransferase ISU54_07870 PF05638 Type VI secretion system effector, Hcp ISU54_07940 PF00392 Bacterial regulatory proteins, gntR family ISU54_07940 PF07702 UTRA domain ISU54_07945 PF02894 Oxidoreductase family, C-terminal alpha/beta domain ISU54_07945 PF01408 Oxidoreductase family, NAD-binding Rossmann fold ISU54_07955 PF00528 Binding-protein-dependent transport system inner membrane component ISU54_07960 PF00528 Binding-protein-dependent transport system inner membrane component ISU54_07965 PF08402 TOBE domain ISU54_07965 PF00005 ABC transporter ISU54_07985 PF02796 Helix-turn-helix domain of resolvase ISU54_07985 PF00665 Integrase core domain ISU54_07990 PF01695 IstB-like ATP binding protein ISU54_08025 PF07715 TonB-dependent Receptor Plug Domain ISU54_08025 PF00593 TonB dependent receptor ISU54_08030 PF00501 AMP-binding enzyme ISU54_08030 PF13193 AMP-binding enzyme C-terminal domain ISU54_08035 PF00975 Thioesterase domain ISU54_08045 PF00698 Acyl transferase domain ISU54_08045 PF16197 Ketoacyl-synthetase C-terminal extension ISU54_08045 PF00668 Condensation domain ISU54_08045 PF00109 Beta-ketoacyl synthase, N-terminal domain ISU54_08045 PF02801 Beta-ketoacyl synthase, C-terminal domain ISU54_08045 PF00550 Phosphopantetheine attachment site ISU54_08050 PF08242 Methyltransferase domain ISU54_08050 PF00501 AMP-binding enzyme ISU54_08050 PF00668 Condensation domain ISU54_08050 PF00550 Phosphopantetheine attachment site ISU54_08060 PF00664 ABC transporter transmembrane region ISU54_08060 PF00005 ABC transporter ISU54_08060 PF08021 Siderophore-interacting FAD-binding domain ISU54_08060 PF04954 Siderophore-interacting protein ISU54_08065 PF00664 ABC transporter transmembrane region ISU54_08065 PF00005 ABC transporter ISU54_08070 PF07690 Major Facilitator Superfamily ISU54_08075 PF00425 chorismate binding enzyme ISU54_08080 PF00589 Phage integrase family ISU54_08080 PF13356 Arm DNA-binding domain ISU54_08090 PF02753 Pili assembly chaperone PapD, C-terminal domain ISU54_08090 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain ISU54_08100 PF13953 PapC C-terminal domain ISU54_08100 PF13954 PapC N-terminal domain ISU54_08100 PF00577 Outer membrane usher protein ISU54_08105 PF02753 Pili assembly chaperone PapD, C-terminal domain ISU54_08105 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain ISU54_08115 PF00497 Bacterial extracellular solute-binding proteins, family 3 ISU54_08115 PF00072 Response regulator receiver domain ISU54_08115 PF00989 PAS fold ISU54_08115 PF01627 Hpt domain ISU54_08115 PF00512 His Kinase A (phospho-acceptor) domain ISU54_08115 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ISU54_08120 PF00072 Response regulator receiver domain ISU54_08120 PF00196 Bacterial regulatory proteins, luxR family ISU54_08125 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain ISU54_08125 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain ISU54_08130 PF01575 MaoC like domain ISU54_08135 PF03328 HpcH/HpaI aldolase/citrate lyase family ISU54_08140 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ISU54_08140 PF03466 LysR substrate binding domain ISU54_08155 PF07690 Major Facilitator Superfamily ISU54_08160 PF04909 Amidohydrolase ISU54_08170 PF02508 Rnf-Nqr subunit, membrane protein ISU54_08175 PF00155 Aminotransferase class I and II ISU54_08180 PF00324 Amino acid permease ISU54_08185 PF08220 DeoR-like helix-turn-helix domain ISU54_08185 PF00455 DeoR C terminal sensor domain ISU54_08195 PF04960 Glutaminase ISU54_08210 PF03239 Iron permease FTR1 family ISU54_08215 PF10634 Fe2+ transport protein ISU54_08225 PF12704 MacB-like periplasmic core domain ISU54_08225 PF02687 FtsX-like permease family ISU54_08225 PF00005 ABC transporter ISU54_08235 PF12704 MacB-like periplasmic core domain ISU54_08235 PF02687 FtsX-like permease family ISU54_08235 PF00005 ABC transporter ISU54_08240 PF00578 AhpC/TSA family ISU54_08250 PF03848 Tellurite resistance protein TehB ISU54_08250 PF09313 Domain of unknown function (DUF1971) ISU54_08255 PF00557 Metallopeptidase family M24 ISU54_08265 PF14883 Hypothetical glycosyl hydrolase family 13 ISU54_08265 PF01522 Polysaccharide deacetylase ISU54_08270 PF00535 Glycosyl transferase family 2 ISU54_08275 PF13994 PgaD-like protein ISU54_08290 PF02562 PhoH-like protein ISU54_08295 PF01699 Sodium/calcium exchanger protein ISU54_08300 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term ISU54_08300 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ISU54_08300 PF00672 HAMP domain ISU54_08300 PF07730 Histidine kinase ISU54_08310 PF00155 Aminotransferase class I and II ISU54_08310 PF00392 Bacterial regulatory proteins, gntR family ISU54_08315 PF00202 Aminotransferase class-III ISU54_08325 PF00171 Aldehyde dehydrogenase family ISU54_08330 PF04996 Succinylarginine dihydrolase ISU54_08335 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family ISU54_08345 PF02796 Helix-turn-helix domain of resolvase ISU54_08345 PF00665 Integrase core domain ISU54_08350 PF01695 IstB-like ATP binding protein ISU54_08365 PF01979 Amidohydrolase family ISU54_08370 PF00392 Bacterial regulatory proteins, gntR family ISU54_08370 PF07702 UTRA domain ISU54_08375 PF01979 Amidohydrolase family ISU54_08380 PF05962 HutD ISU54_08390 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal ISU54_08390 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III ISU54_08395 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III ISU54_08395 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal ISU54_08400 PF01370 NAD dependent epimerase/dehydratase family ISU54_08445 PF00872 Transposase, Mutator family ISU54_08465 PF08242 Methyltransferase domain ISU54_08510 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ISU54_08510 PF00512 His Kinase A (phospho-acceptor) domain ISU54_08510 PF00672 HAMP domain ISU54_08515 PF00486 Transcriptional regulatory protein, C terminal ISU54_08515 PF00072 Response regulator receiver domain ISU54_08520 PF02129 X-Pro dipeptidyl-peptidase (S15 family) ISU54_08560 PF01926 50S ribosome-binding GTPase ISU54_08560 PF06071 Protein of unknown function (DUF933) ISU54_08565 PF01195 Peptidyl-tRNA hydrolase ISU54_08570 PF10762 Protein of unknown function (DUF2583) ISU54_08575 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase ISU54_08575 PF14572 Phosphoribosyl synthetase-associated domain ISU54_08580 PF08544 GHMP kinases C terminal ISU54_08580 PF00288 GHMP kinases N terminal domain ISU54_08585 PF03550 Outer membrane lipoprotein LolB ISU54_08590 PF01488 Shikimate / quinate 5-dehydrogenase ISU54_08590 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain ISU54_08590 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain ISU54_08595 PF00472 RF-1 domain ISU54_08595 PF03462 PCRF domain ISU54_08600 PF17827 PrmC N-terminal domain ISU54_08600 PF13847 Methyltransferase domain ISU54_08605 PF04247 Invasion gene expression up-regulator, SirB ISU54_08610 PF13369 Transglutaminase-like superfamily ISU54_08615 PF00793 DAHP synthetase I family ISU54_08620 PF01740 STAS domain ISU54_08620 PF00916 Sulfate permease family ISU54_08630 PF03009 Glycerophosphoryl diester phosphodiesterase family ISU54_08640 PF00528 Binding-protein-dependent transport system inner membrane component ISU54_08645 PF00528 Binding-protein-dependent transport system inner membrane component ISU54_08650 PF00005 ABC transporter ISU54_08650 PF08402 TOBE domain ISU54_08655 PF01797 Transposase IS200 like ISU54_08665 PF03009 Glycerophosphoryl diester phosphodiesterase family ISU54_08670 PF01325 Iron dependent repressor, N-terminal DNA binding domain ISU54_08670 PF00480 ROK family ISU54_08680 PF02811 PHP domain ISU54_08685 PF02613 Nitrate reductase delta subunit ISU54_08690 PF07273 Protein of unknown function (DUF1439) ISU54_08695 PF07690 Major Facilitator Superfamily ISU54_08700 PF13302 Acetyltransferase (GNAT) domain ISU54_08705 PF04337 Protein of unknown function, DUF480 ISU54_08710 PF03023 Lipid II flippase MurJ ISU54_08715 PF08479 POTRA domain, ShlB-type ISU54_08715 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB ISU54_08715 PF17287 POTRA domain ISU54_08720 PF05860 haemagglutination activity domain ISU54_08720 PF13332 Hemagglutinin repeat ISU54_08725 PF00750 tRNA synthetases class I (R) ISU54_08725 PF05746 DALR anticodon binding domain ISU54_08725 PF03485 Arginyl tRNA synthetase N terminal domain ISU54_08730 PF06185 YecM protein ISU54_08735 PF03932 CutC family ISU54_08740 PF08003 Protein of unknown function (DUF1698) ISU54_08745 PF13649 Methyltransferase domain ISU54_08750 PF01124 MAPEG family ISU54_08755 PF01904 Protein of unknown function DUF72 ISU54_08760 PF02938 GAD domain ISU54_08760 PF01336 OB-fold nucleic acid binding domain ISU54_08760 PF00152 tRNA synthetases class II (D, K and N) ISU54_08765 PF00293 NUDIX domain ISU54_08770 PF01709 Transcriptional regulator ISU54_08775 PF02075 Crossover junction endodeoxyribonuclease RuvC ISU54_08780 PF01330 RuvA N terminal domain ISU54_08780 PF07499 RuvA, C-terminal domain ISU54_08785 PF17864 RuvB AAA lid domain ISU54_08785 PF05491 RuvB C-terminal winged helix domain ISU54_08785 PF05496 Holliday junction DNA helicase RuvB P-loop domain ISU54_08790 PF00950 ABC 3 transport family ISU54_08795 PF00005 ABC transporter ISU54_08800 PF01297 Zinc-uptake complex component A periplasmic ISU54_08805 PF01476 LysM domain ISU54_08805 PF08525 Opacity-associated protein A N-terminal motif ISU54_08805 PF01551 Peptidase family M23 ISU54_08810 PF03279 Bacterial lipid A biosynthesis acyltransferase ISU54_08820 PF00224 Pyruvate kinase, barrel domain ISU54_08820 PF02887 Pyruvate kinase, alpha/beta domain ISU54_08825 PF01380 SIS domain ISU54_08825 PF01418 Helix-turn-helix domain, rpiR family ISU54_08830 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain ISU54_08830 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain ISU54_08835 PF01081 KDPG and KHG aldolase ISU54_08840 PF00893 Small Multidrug Resistance protein ISU54_08845 PF00893 Small Multidrug Resistance protein ISU54_08850 PF01042 Endoribonuclease L-PSP ISU54_08855 PF13307 Helicase C-terminal domain ISU54_08855 PF04851 Type III restriction enzyme, res subunit ISU54_08860 PF00814 Glycoprotease family ISU54_08865 PF03843 Outer membrane lipoprotein Slp family ISU54_08875 PF00501 AMP-binding enzyme ISU54_08875 PF13193 AMP-binding enzyme C-terminal domain ISU54_08880 PF01612 3'-5' exonuclease ISU54_08880 PF00570 HRDC domain ISU54_08885 PF03776 Septum formation topological specificity factor MinE ISU54_08890 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain ISU54_08895 PF05209 Septum formation inhibitor MinC, N-terminal domain ISU54_08895 PF03775 Septum formation inhibitor MinC, C-terminal domain ISU54_08900 PF05166 YcgL domain ISU54_08905 PF13406 Transglycosylase SLT domain ISU54_08910 PF01557 Fumarylacetoacetate (FAA) hydrolase family ISU54_08915 PF03692 Putative zinc- or iron-chelating domain ISU54_08920 PF12167 Arm DNA-binding domain ISU54_08920 PF00589 Phage integrase family ISU54_08925 PF00665 Integrase core domain ISU54_08925 PF02796 Helix-turn-helix domain of resolvase ISU54_08930 PF01695 IstB-like ATP binding protein ISU54_08945 PF05772 NinB protein ISU54_08955 PF06530 Phage antitermination protein Q ISU54_09020 PF00872 Transposase, Mutator family ISU54_09175 PF02413 Caudovirales tail fibre assembly protein, lambda gpK ISU54_09180 PF00872 Transposase, Mutator family ISU54_09190 PF00266 Aminotransferase class-V ISU54_09205 PF02600 Disulfide bond formation protein DsbB ISU54_09215 PF00392 Bacterial regulatory proteins, gntR family ISU54_09215 PF07840 FadR C-terminal domain ISU54_09220 PF04293 SpoVR like protein ISU54_09225 PF01266 FAD dependent oxidoreductase ISU54_09230 PF07690 Major Facilitator Superfamily ISU54_09235 PF02678 Pirin ISU54_09235 PF05726 Pirin C-terminal cupin domain ISU54_09240 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ISU54_09240 PF03466 LysR substrate binding domain ISU54_09250 PF04285 Protein of unknown function (DUF444) ISU54_09255 PF06798 PrkA serine protein kinase C-terminal domain ISU54_09255 PF08298 PrkA AAA domain ISU54_09260 PF06629 MltA-interacting protein MipA ISU54_09265 PF01263 Aldose 1-epimerase ISU54_09270 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain ISU54_09270 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain ISU54_09275 PF01641 SelR domain ISU54_09280 PF07023 Protein of unknown function (DUF1315) ISU54_09285 PF00857 Isochorismatase family ISU54_09290 PF00710 Asparaginase, N-terminal ISU54_09290 PF17763 Glutaminase/Asparaginase C-terminal domain ISU54_09295 PF01343 Peptidase family S49 ISU54_09300 PF00881 Nitroreductase family ISU54_09305 PF00586 AIR synthase related protein, N-terminal domain ISU54_09305 PF02769 AIR synthase related protein, C-terminal domain ISU54_09310 PF01751 Toprim domain ISU54_09310 PF01131 DNA topoisomerase ISU54_09315 PF07383 Protein of unknown function (DUF1496) ISU54_09320 PF00293 NUDIX domain ISU54_09325 PF03372 Endonuclease/Exonuclease/phosphatase family ISU54_09330 PF03466 LysR substrate binding domain ISU54_09330 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ISU54_09350 PF00872 Transposase, Mutator family ISU54_09355 PF00551 Formyl transferase ISU54_09355 PF01842 ACT domain ISU54_09360 PF02810 SEC-C motif ISU54_09365 PF00072 Response regulator receiver domain ISU54_09370 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain ISU54_09370 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain ISU54_09370 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain ISU54_09375 PF00816 H-NS histone family ISU54_09380 PF00265 Thymidine kinase ISU54_09385 PF01695 IstB-like ATP binding protein ISU54_09390 PF00665 Integrase core domain ISU54_09390 PF02796 Helix-turn-helix domain of resolvase ISU54_09395 PF01797 Transposase IS200 like ISU54_09400 PF02074 Carboxypeptidase Taq (M32) metallopeptidase ISU54_09405 PF00672 HAMP domain ISU54_09405 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ISU54_09405 PF00512 His Kinase A (phospho-acceptor) domain ISU54_09410 PF00072 Response regulator receiver domain ISU54_09410 PF00486 Transcriptional regulatory protein, C terminal ISU54_09420 PF13520 Amino acid permease ISU54_09425 PF07338 Protein of unknown function (DUF1471) ISU54_09430 PF05222 Alanine dehydrogenase/PNT, N-terminal domain ISU54_09430 PF01262 Alanine dehydrogenase/PNT, C-terminal domain ISU54_09430 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch ISU54_09435 PF02233 NAD(P) transhydrogenase beta subunit ISU54_09440 PF00582 Universal stress protein family ISU54_09445 PF13545 Crp-like helix-turn-helix domain ISU54_09445 PF00027 Cyclic nucleotide-binding domain ISU54_09450 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain ISU54_09450 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain ISU54_09455 PF00245 Alkaline phosphatase ISU54_09465 PF13419 Haloacid dehalogenase-like hydrolase ISU54_09470 PF01842 ACT domain ISU54_09475 PF00205 Thiamine pyrophosphate enzyme, central domain ISU54_09475 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain ISU54_09475 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain ISU54_09505 PF10423 Bacterial AMP nucleoside phosphorylase N-terminus ISU54_09505 PF01048 Phosphorylase superfamily ISU54_09510 PF00005 ABC transporter ISU54_09515 PF00528 Binding-protein-dependent transport system inner membrane component ISU54_09520 PF09084 NMT1/THI5 like ISU54_09535 PF00356 Bacterial regulatory proteins, lacI family ISU54_09540 PF00654 Voltage gated chloride channel ISU54_09550 PF00480 ROK family ISU54_09555 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ISU54_09555 PF03466 LysR substrate binding domain ISU54_09560 PF07690 Major Facilitator Superfamily ISU54_09565 PF05472 DNA replication terminus site-binding protein (Ter protein) ISU54_09570 PF10415 Fumarase C C-terminus ISU54_09570 PF00206 Lyase ISU54_09575 PF01238 Phosphomannose isomerase type I ISU54_09580 PF06097 Bacterial protein of unknown function (DUF945) ISU54_09590 PF13593 SBF-like CPA transporter family (DUF4137) ISU54_09595 PF01408 Oxidoreductase family, NAD-binding Rossmann fold ISU54_09595 PF02894 Oxidoreductase family, C-terminal alpha/beta domain ISU54_09600 PF12833 Helix-turn-helix domain ISU54_09600 PF02311 AraC-like ligand binding domain ISU54_09605 PF02653 Branched-chain amino acid transport system / permease component ISU54_09610 PF00005 ABC transporter ISU54_09615 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family ISU54_09620 PF02782 FGGY family of carbohydrate kinases, C-terminal domain ISU54_09625 PF02610 L-arabinose isomerase ISU54_09625 PF11762 L-arabinose isomerase C-terminal domain ISU54_09630 PF00664 ABC transporter transmembrane region ISU54_09630 PF03412 Peptidase C39 family ISU54_09630 PF00005 ABC transporter ISU54_09640 PF13533 Biotin-lipoyl like ISU54_09645 PF00005 ABC transporter ISU54_09645 PF00664 ABC transporter transmembrane region ISU54_09645 PF03412 Peptidase C39 family ISU54_09650 PF03412 Peptidase C39 family ISU54_09650 PF00005 ABC transporter ISU54_09650 PF00664 ABC transporter transmembrane region ISU54_09655 PF10754 Protein of unknown function (DUF2569) ISU54_09660 PF02508 Rnf-Nqr subunit, membrane protein ISU54_09665 PF04060 Putative Fe-S cluster ISU54_09670 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit ISU54_09670 PF13237 4Fe-4S dicluster domain ISU54_09670 PF13375 RnfC Barrel sandwich hybrid domain ISU54_09670 PF10531 SLBB domain ISU54_09675 PF12833 Helix-turn-helix domain ISU54_09675 PF06445 GyrI-like small molecule binding domain ISU54_09680 PF03116 NQR2, RnfD, RnfE family ISU54_09685 PF04205 FMN-binding domain ISU54_09690 PF02508 Rnf-Nqr subunit, membrane protein ISU54_09695 PF10576 Iron-sulfur binding domain of endonuclease III ISU54_09695 PF00633 Helix-hairpin-helix motif ISU54_09695 PF00730 HhH-GPD superfamily base excision DNA repair protein ISU54_09700 PF01370 NAD dependent epimerase/dehydratase family ISU54_09705 PF07690 Major Facilitator Superfamily ISU54_09710 PF00773 RNB domain ISU54_09710 PF17876 Cold shock domain ISU54_09710 PF08206 Ribonuclease B OB domain ISU54_09710 PF00575 S1 RNA binding domain ISU54_09715 PF02554 Carbon starvation protein CstA ISU54_09715 PF13722 5TM C-terminal transporter carbon starvation CstA ISU54_09720 PF04328 Selenoprotein, putative ISU54_09725 PF00923 Transaldolase/Fructose-6-phosphate aldolase ISU54_09735 PF00596 Class II Aldolase and Adducin N-terminal domain ISU54_09740 PF05433 Glycine zipper 2TM domain ISU54_09745 PF01253 Translation initiation factor SUI1 ISU54_09750 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family ISU54_09760 PF18073 Rubredoxin metal binding domain ISU54_09765 PF06305 Lipopolysaccharide assembly protein A domain ISU54_09770 PF01569 PAP2 superfamily ISU54_09775 PF00925 GTP cyclohydrolase II ISU54_09780 PF00330 Aconitase family (aconitate hydratase) ISU54_09780 PF00694 Aconitase C-terminal domain ISU54_09790 PF03466 LysR substrate binding domain ISU54_09790 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ISU54_09795 PF01396 Topoisomerase DNA binding C4 zinc finger ISU54_09795 PF01751 Toprim domain ISU54_09795 PF01131 DNA topoisomerase ISU54_09795 PF08272 Topoisomerase I zinc-ribbon-like ISU54_09805 PF10692 Protein of unknown function (DUF2498) ISU54_09810 PF01343 Peptidase family S49 ISU54_09810 PF08496 Peptidase family S49 N-terminal ISU54_09815 PF00106 short chain dehydrogenase ISU54_09820 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP ISU54_09825 PF01479 S4 domain ISU54_09825 PF00849 RNA pseudouridylate synthase ISU54_09830 PF01300 Telomere recombination ISU54_09835 PF02811 PHP domain ISU54_09845 PF00425 chorismate binding enzyme ISU54_09845 PF04715 Anthranilate synthase component I, N terminal region ISU54_09850 PF00117 Glutamine amidotransferase class-I ISU54_09855 PF00591 Glycosyl transferase family, a/b domain ISU54_09855 PF02885 Glycosyl transferase family, helical bundle domain ISU54_09860 PF00218 Indole-3-glycerol phosphate synthase ISU54_09860 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase ISU54_09865 PF00291 Pyridoxal-phosphate dependent enzyme ISU54_09870 PF00290 Tryptophan synthase alpha chain ISU54_09880 PF03922 OmpW family ISU54_09905 PF04279 Intracellular septation protein A ISU54_09910 PF03061 Thioesterase superfamily ISU54_09915 PF00872 Transposase, Mutator family ISU54_09920 PF03544 Gram-negative bacterial TonB protein C-terminal ISU54_09925 PF03795 YCII-related domain ISU54_09940 PF13505 Outer membrane protein beta-barrel domain ISU54_09955 PF13396 Phospholipase_D-nuclease N-terminal ISU54_09955 PF13091 PLD-like domain ISU54_09960 PF04269 Protein of unknown function, DUF440 ISU54_09970 PF08352 Oligopeptide/dipeptide transporter, C-terminal region ISU54_09970 PF00005 ABC transporter ISU54_09975 PF08352 Oligopeptide/dipeptide transporter, C-terminal region ISU54_09975 PF00005 ABC transporter ISU54_09980 PF00528 Binding-protein-dependent transport system inner membrane component ISU54_09980 PF12911 N-terminal TM domain of oligopeptide transport permease C ISU54_09985 PF00528 Binding-protein-dependent transport system inner membrane component ISU54_09990 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle ISU54_09995 PF01914 MarC family integral membrane protein ISU54_10000 PF00465 Iron-containing alcohol dehydrogenase ISU54_10000 PF00171 Aldehyde dehydrogenase family ISU54_10005 PF02796 Helix-turn-helix domain of resolvase ISU54_10005 PF00665 Integrase core domain ISU54_10010 PF01695 IstB-like ATP binding protein ISU54_10040 PF00089 Trypsin ISU54_10055 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold ISU54_10055 PF00271 Helicase conserved C-terminal domain ISU54_10055 PF04408 Helicase associated domain (HA2) ISU54_10055 PF11898 Domain of unknown function (DUF3418) ISU54_10055 PF00270 DEAD/DEAH box helicase ISU54_10060 PF02525 Flavodoxin-like fold ISU54_10065 PF04198 Putative sugar-binding domain ISU54_10065 PF00325 Bacterial regulatory proteins, crp family ISU54_10070 PF01232 Mannitol dehydrogenase Rossmann domain ISU54_10070 PF08125 Mannitol dehydrogenase C-terminal domain ISU54_10075 PF07027 Protein of unknown function (DUF1318) ISU54_10080 PF13617 YnbE-like lipoprotein ISU54_10085 PF11739 Dicarboxylate transport ISU54_10090 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ISU54_10090 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain ISU54_10095 PF03724 META domain ISU54_10100 PF03891 Domain of unknown function (DUF333) ISU54_10105 PF02308 MgtC family ISU54_10110 PF00893 Small Multidrug Resistance protein ISU54_10115 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg ISU54_10115 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase ISU54_10115 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II ISU54_10115 PF10371 Domain of unknown function ISU54_10115 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain ISU54_10120 PF01171 PP-loop family ISU54_10125 PF07859 alpha/beta hydrolase fold ISU54_10135 PF01544 CorA-like Mg2+ transporter protein ISU54_10140 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle ISU54_10145 PF00246 Zinc carboxypeptidase ISU54_10150 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain ISU54_10150 PF13378 Enolase C-terminal domain-like ISU54_10155 PF08534 Redoxin ISU54_10160 PF01797 Transposase IS200 like ISU54_10165 PF00158 Sigma-54 interaction domain ISU54_10165 PF18024 Helix-turn-helix domain ISU54_10170 PF09722 Protein of unknown function (DUF2384) ISU54_10175 PF08808 RES domain ISU54_10180 PF05128 Domain of unknown function (DUF697) ISU54_10185 PF04317 YcjX-like family, DUF463 ISU54_10195 PF04024 PspC domain ISU54_10200 PF06667 Phage shock protein B ISU54_10205 PF04012 PspA/IM30 family ISU54_10210 PF02954 Bacterial regulatory protein, Fis family ISU54_10210 PF00158 Sigma-54 interaction domain ISU54_10215 PF01797 Transposase IS200 like ISU54_10220 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle ISU54_10225 PF00528 Binding-protein-dependent transport system inner membrane component ISU54_10230 PF12911 N-terminal TM domain of oligopeptide transport permease C ISU54_10230 PF00528 Binding-protein-dependent transport system inner membrane component ISU54_10235 PF00005 ABC transporter ISU54_10235 PF08352 Oligopeptide/dipeptide transporter, C-terminal region ISU54_10240 PF00005 ABC transporter ISU54_10250 PF00854 POT family ISU54_10255 PF04893 Yip1 domain ISU54_10260 PF11656 YjbD family (DUF3811) ISU54_10265 PF00043 Glutathione S-transferase, C-terminal domain ISU54_10265 PF02798 Glutathione S-transferase, N-terminal domain ISU54_10270 PF08543 Phosphomethylpyrimidine kinase ISU54_10275 PF01479 S4 domain ISU54_10275 PF00579 tRNA synthetases class I (W and Y) ISU54_10280 PF01243 Pyridoxamine 5'-phosphate oxidase ISU54_10280 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region ISU54_10285 PF09864 Membrane-bound lysozyme-inhibitor of c-type lysozyme ISU54_10290 PF03702 Anhydro-N-acetylmuramic acid kinase ISU54_10295 PF05433 Glycine zipper 2TM domain ISU54_10300 PF01047 MarR family ISU54_10305 PF00884 Sulfatase ISU54_10305 PF08019 Phosphoethanolamine transferase EptA/EptB ISU54_10310 PF16925 Tetracyclin repressor-like, C-terminal domain ISU54_10310 PF00440 Bacterial regulatory proteins, tetR family ISU54_10320 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily ISU54_10325 PF00929 Exonuclease ISU54_10335 PF00462 Glutaredoxin ISU54_10340 PF00877 NlpC/P60 family ISU54_10345 PF02777 Iron/manganese superoxide dismutases, C-terminal domain ISU54_10345 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain ISU54_10355 PF00356 Bacterial regulatory proteins, lacI family ISU54_10360 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ISU54_10360 PF03466 LysR substrate binding domain ISU54_10365 PF07690 Major Facilitator Superfamily ISU54_10375 PF00677 Lumazine binding domain ISU54_10385 PF01554 MatE ISU54_10400 PF02887 Pyruvate kinase, alpha/beta domain ISU54_10400 PF00224 Pyruvate kinase, barrel domain ISU54_10405 PF04728 Lipoprotein leucine-zipper ISU54_10410 PF01797 Transposase IS200 like ISU54_10415 PF00665 Integrase core domain ISU54_10415 PF02796 Helix-turn-helix domain of resolvase ISU54_10420 PF01695 IstB-like ATP binding protein ISU54_10430 PF17969 L,D-transpeptidase C-terminal domain ISU54_10430 PF01476 LysM domain ISU54_10430 PF03734 L,D-transpeptidase catalytic domain ISU54_10435 PF02657 Fe-S metabolism associated domain ISU54_10440 PF00266 Aminotransferase class-V ISU54_10445 PF01458 Uncharacterized protein family (UPF0051) ISU54_10450 PF00005 ABC transporter ISU54_10455 PF01458 Uncharacterized protein family (UPF0051) ISU54_10460 PF01521 Iron-sulphur cluster biosynthesis ISU54_10465 PF03061 Thioesterase superfamily ISU54_10470 PF02913 FAD linked oxidases, C-terminal domain ISU54_10470 PF13183 4Fe-4S dicluster domain ISU54_10470 PF01565 FAD binding domain ISU54_10475 PF01594 AI-2E family transporter ISU54_10485 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain ISU54_10485 PF00391 PEP-utilising enzyme, mobile domain ISU54_10485 PF02896 PEP-utilising enzyme, TIM barrel domain ISU54_10490 PF03618 Kinase/pyrophosphorylase ISU54_10495 PF00793 DAHP synthetase I family ISU54_10505 PF03099 Biotin/lipoate A/B protein ligase family ISU54_10505 PF10437 Bacterial lipoate protein ligase C-terminus ISU54_10510 PF00877 NlpC/P60 family ISU54_10525 PF00892 EamA-like transporter family ISU54_10530 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase ISU54_10535 PF01522 Polysaccharide deacetylase ISU54_10540 PF00551 Formyl transferase ISU54_10540 PF02911 Formyl transferase, C-terminal domain ISU54_10540 PF01370 NAD dependent epimerase/dehydratase family ISU54_10545 PF00535 Glycosyl transferase family 2 ISU54_10550 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family ISU54_10555 PF00005 ABC transporter ISU54_10560 PF00255 Glutathione peroxidase ISU54_10565 PF01032 FecCD transport family ISU54_10575 PF00216 Bacterial DNA-binding protein ISU54_10580 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain ISU54_10580 PF03484 tRNA synthetase B5 domain ISU54_10580 PF03147 Ferredoxin-fold anticodon binding domain ISU54_10580 PF01588 Putative tRNA binding domain ISU54_10580 PF03483 B3/4 domain ISU54_10585 PF01409 tRNA synthetases class II core domain (F) ISU54_10585 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain ISU54_10595 PF00453 Ribosomal protein L20 ISU54_10600 PF01632 Ribosomal protein L35 ISU54_10605 PF00707 Translation initiation factor IF-3, C-terminal domain ISU54_10605 PF05198 Translation initiation factor IF-3, N-terminal domain ISU54_10610 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain ISU54_10610 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) ISU54_10610 PF02824 TGS domain ISU54_10610 PF03129 Anticodon binding domain ISU54_10615 PF13619 KTSC domain ISU54_10625 PF01914 MarC family integral membrane protein ISU54_10630 PF01464 Transglycosylase SLT domain ISU54_10635 PF01297 Zinc-uptake complex component A periplasmic ISU54_10640 PF00005 ABC transporter ISU54_10645 PF00950 ABC 3 transport family ISU54_10650 PF00950 ABC 3 transport family ISU54_10660 PF03881 Fructosamine kinase ISU54_10665 PF14002 YniB-like protein ISU54_10670 PF13419 Haloacid dehalogenase-like hydrolase ISU54_10675 PF00872 Transposase, Mutator family ISU54_10680 PF07883 Cupin domain ISU54_10685 PF04962 KduI/IolB family ISU54_10695 PF06917 Periplasmic pectate lyase ISU54_10700 PF00528 Binding-protein-dependent transport system inner membrane component ISU54_10705 PF00528 Binding-protein-dependent transport system inner membrane component ISU54_10710 PF03459 TOBE domain ISU54_10710 PF17912 MalK OB fold domain ISU54_10710 PF00005 ABC transporter ISU54_10715 PF01547 Bacterial extracellular solute-binding protein ISU54_10720 PF06178 Oligogalacturonate-specific porin protein (KdgM) ISU54_10725 PF04307 LexA-binding, inner membrane-associated putative hydrolase ISU54_10730 PF00375 Sodium:dicarboxylate symporter family ISU54_10735 PF01510 N-acetylmuramoyl-L-alanine amidase ISU54_10740 PF01614 Bacterial transcriptional regulator ISU54_10740 PF09339 IclR helix-turn-helix domain ISU54_10745 PF14583 Oligogalacturonate lyase ISU54_10750 PF07690 Major Facilitator Superfamily ISU54_10755 PF02753 Pili assembly chaperone PapD, C-terminal domain ISU54_10755 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain ISU54_10765 PF00577 Outer membrane usher protein ISU54_10765 PF13953 PapC C-terminal domain ISU54_10765 PF13954 PapC N-terminal domain ISU54_10770 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain ISU54_10770 PF02753 Pili assembly chaperone PapD, C-terminal domain ISU54_10775 PF00419 Fimbrial protein ISU54_10780 PF01435 Peptidase family M48 ISU54_10785 PF17804 Tail specific protease N-terminal domain ISU54_10785 PF11818 C-terminal domain of tail specific protease (DUF3340) ISU54_10785 PF00595 PDZ domain ISU54_10785 PF03572 Peptidase family S41 ISU54_10790 PF17516 ProQ C-terminal domain ISU54_10790 PF04352 ProQ/FINO family ISU54_10795 PF13185 GAF domain ISU54_10800 PF04403 Paraquat-inducible protein A ISU54_10805 PF02470 MlaD protein ISU54_10825 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain ISU54_10825 PF02753 Pili assembly chaperone PapD, C-terminal domain ISU54_10840 PF07351 Protein of unknown function (DUF1480) ISU54_10850 PF02796 Helix-turn-helix domain of resolvase ISU54_10850 PF00665 Integrase core domain ISU54_10855 PF01695 IstB-like ATP binding protein ISU54_10880 PF01168 Alanine racemase, N-terminal domain ISU54_10880 PF00842 Alanine racemase, C-terminal domain ISU54_10890 PF03895 YadA-like membrane anchor domain ISU54_10890 PF05658 Head domain of trimeric autotransporter adhesin ISU54_10890 PF05662 Coiled stalk of trimeric autotransporter adhesin ISU54_10890 PF13018 Extended Signal Peptide of Type V secretion system ISU54_10895 PF05662 Coiled stalk of trimeric autotransporter adhesin ISU54_10895 PF03895 YadA-like membrane anchor domain ISU54_10895 PF05658 Head domain of trimeric autotransporter adhesin ISU54_10895 PF13018 Extended Signal Peptide of Type V secretion system ISU54_10900 PF01510 N-acetylmuramoyl-L-alanine amidase ISU54_10905 PF04344 Chemotaxis phosphatase, CheZ ISU54_10910 PF00072 Response regulator receiver domain ISU54_10915 PF00072 Response regulator receiver domain ISU54_10915 PF01339 CheB methylesterase ISU54_10920 PF03705 CheR methyltransferase, all-alpha domain ISU54_10920 PF01739 CheR methyltransferase, SAM binding domain ISU54_10925 PF00672 HAMP domain ISU54_10925 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ISU54_10925 PF02203 Tar ligand binding domain homologue ISU54_10930 PF00672 HAMP domain ISU54_10930 PF02203 Tar ligand binding domain homologue ISU54_10930 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ISU54_10945 PF12951 Passenger-associated-transport-repeat ISU54_10950 PF13309 HTH domain ISU54_10950 PF08348 YheO-like PAS domain ISU54_10960 PF01042 Endoribonuclease L-PSP ISU54_10965 PF07690 Major Facilitator Superfamily ISU54_10970 PF01584 CheW-like domain ISU54_10975 PF09078 CheY binding ISU54_10975 PF02895 Signal transducing histidine kinase, homodimeric domain ISU54_10975 PF01584 CheW-like domain ISU54_10975 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ISU54_10975 PF01627 Hpt domain ISU54_10980 PF13677 Membrane MotB of proton-channel complex MotA/MotB ISU54_10980 PF00691 OmpA family ISU54_10985 PF01618 MotA/TolQ/ExbB proton channel family ISU54_10990 PF05280 Flagellar transcriptional activator (FlhC) ISU54_11000 PF00690 Cation transporter/ATPase, N-terminus ISU54_11000 PF00689 Cation transporting ATPase, C-terminus ISU54_11005 PF02308 MgtC family ISU54_11015 PF10781 Dextransucrase DSRB ISU54_11020 PF00313 'Cold-shock' DNA-binding domain ISU54_11025 PF02836 Glycosyl hydrolases family 2, TIM barrel domain ISU54_11025 PF00703 Glycosyl hydrolases family 2 ISU54_11025 PF16353 Domain of unknown function(DUF4981) ISU54_11025 PF02929 Beta galactosidase small chain ISU54_11025 PF02837 Glycosyl hydrolases family 2, sugar binding domain ISU54_11030 PF08659 KR domain ISU54_11030 PF02801 Beta-ketoacyl synthase, C-terminal domain ISU54_11030 PF14765 Polyketide synthase dehydratase ISU54_11030 PF16197 Ketoacyl-synthetase C-terminal extension ISU54_11030 PF00107 Zinc-binding dehydrogenase ISU54_11030 PF08240 Alcohol dehydrogenase GroES-like domain ISU54_11030 PF00698 Acyl transferase domain ISU54_11030 PF00109 Beta-ketoacyl synthase, N-terminal domain ISU54_11030 PF00550 Phosphopantetheine attachment site ISU54_11035 PF10777 Inner membrane protein YlaC ISU54_11045 PF13404 AsnC-type helix-turn-helix domain ISU54_11045 PF01037 Lrp/AsnC ligand binding domain ISU54_11055 PF14001 YdfZ protein ISU54_11060 PF00328 Histidine phosphatase superfamily (branch 2) ISU54_11070 PF01638 HxlR-like helix-turn-helix ISU54_11075 PF05368 NmrA-like family ISU54_11080 PF08447 PAS fold ISU54_11080 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ISU54_11090 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family ISU54_11090 PF00356 Bacterial regulatory proteins, lacI family ISU54_11095 PF00180 Isocitrate/isopropylmalate dehydrogenase ISU54_11100 PF00849 RNA pseudouridylate synthase ISU54_11105 PF00293 NUDIX domain ISU54_11115 PF04356 Protein of unknown function (DUF489) ISU54_11120 PF00206 Lyase ISU54_11120 PF08328 Adenylosuccinate lyase C-terminal ISU54_11130 PF00486 Transcriptional regulatory protein, C terminal ISU54_11130 PF00072 Response regulator receiver domain ISU54_11135 PF08918 PhoQ Sensor ISU54_11135 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ISU54_11140 PF08007 Cupin superfamily protein ISU54_11145 PF07687 Peptidase dimerisation domain ISU54_11145 PF01546 Peptidase family M20/M25/M40 ISU54_11150 PF02146 Sir2 family ISU54_11155 PF00480 ROK family ISU54_11160 PF00480 ROK family ISU54_11165 PF12704 MacB-like periplasmic core domain ISU54_11165 PF02687 FtsX-like permease family ISU54_11170 PF00005 ABC transporter ISU54_11175 PF02687 FtsX-like permease family ISU54_11175 PF12704 MacB-like periplasmic core domain ISU54_11180 PF02559 CarD-like/TRCF domain ISU54_11180 PF00270 DEAD/DEAH box helicase ISU54_11180 PF00271 Helicase conserved C-terminal domain ISU54_11180 PF17757 UvrB interaction domain ISU54_11180 PF03461 TRCF domain ISU54_11185 PF05433 Glycine zipper 2TM domain ISU54_11190 PF00872 Transposase, Mutator family ISU54_11205 PF07992 Pyridine nucleotide-disulphide oxidoreductase ISU54_11210 PF05728 Uncharacterised protein family (UPF0227) ISU54_11215 PF00933 Glycosyl hydrolase family 3 N terminal domain ISU54_11220 PF01636 Phosphotransferase enzyme family ISU54_11225 PF08139 Prokaryotic membrane lipoprotein lipid attachment site ISU54_11225 PF13036 Peptidoglycan-synthase activator LpoB ISU54_11230 PF07233 Protein of unknown function (DUF1425) ISU54_11235 PF01230 HIT domain ISU54_11240 PF08501 Shikimate dehydrogenase substrate binding domain ISU54_11245 PF01797 Transposase IS200 like ISU54_11250 PF02378 Phosphotransferase system, EIIC ISU54_11250 PF00367 phosphotransferase system, EIIB ISU54_11255 PF01026 TatD related DNase ISU54_11260 PF09115 DNA polymerase III, delta subunit, C terminal ISU54_11265 PF02223 Thymidylate kinase ISU54_11270 PF02618 YceG-like family ISU54_11275 PF01063 Amino-transferase class IV ISU54_11280 PF01797 Transposase IS200 like ISU54_11285 PF02801 Beta-ketoacyl synthase, C-terminal domain ISU54_11285 PF00109 Beta-ketoacyl synthase, N-terminal domain ISU54_11290 PF00550 Phosphopantetheine attachment site ISU54_11300 PF00698 Acyl transferase domain ISU54_11305 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III ISU54_11305 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal ISU54_11310 PF02504 Fatty acid synthesis protein ISU54_11315 PF01783 Ribosomal L32p protein family ISU54_11320 PF02620 Large ribosomal RNA subunit accumulation protein YceD ISU54_11325 PF02545 Maf-like protein ISU54_11330 PF01479 S4 domain ISU54_11330 PF00849 RNA pseudouridylate synthase ISU54_11335 PF12111 Polyribonucleotide phosphorylase C terminal ISU54_11335 PF00575 S1 RNA binding domain ISU54_11335 PF10150 Ribonuclease E/G family ISU54_11340 PF00872 Transposase, Mutator family ISU54_11345 PF13991 BssS protein family ISU54_11350 PF06183 DinI-like family ISU54_11355 PF01979 Amidohydrolase family ISU54_11360 PF03992 Antibiotic biosynthesis monooxygenase ISU54_11370 PF00872 Transposase, Mutator family ISU54_11375 PF01266 FAD dependent oxidoreductase ISU54_11380 PF00196 Bacterial regulatory proteins, luxR family ISU54_11390 PF01594 AI-2E family transporter ISU54_11395 PF00581 Rhodanese-like domain ISU54_11395 PF12368 Rhodanase C-terminal ISU54_11395 PF17773 UPF0176 acylphosphatase like domain ISU54_11410 PF00765 Autoinducer synthase ISU54_11415 PF03472 Autoinducer binding domain ISU54_11415 PF00196 Bacterial regulatory proteins, luxR family ISU54_11420 PF03466 LysR substrate binding domain ISU54_11420 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ISU54_11430 PF00083 Sugar (and other) transporter ISU54_11440 PF00248 Aldo/keto reductase family ISU54_11445 PF09618 CRISPR-associated protein (Cas_Csy4) ISU54_11450 PF09615 CRISPR-associated protein (Cas_Csy3) ISU54_11455 PF09614 CRISPR-associated protein (Cas_Csy2) ISU54_11460 PF09611 CRISPR-associated protein (Cas_Csy1) ISU54_11470 PF01867 CRISPR associated protein Cas1 ISU54_11475 PF00924 Mechanosensitive ion channel ISU54_11500 PF04041 beta-1,4-mannooligosaccharide phosphorylase ISU54_11505 PF00528 Binding-protein-dependent transport system inner membrane component ISU54_11510 PF00528 Binding-protein-dependent transport system inner membrane component ISU54_11520 PF00356 Bacterial regulatory proteins, lacI family ISU54_11525 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I ISU54_11525 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II ISU54_11525 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III ISU54_11525 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain ISU54_11530 PF17912 MalK OB fold domain ISU54_11530 PF00005 ABC transporter ISU54_11540 PF04829 Pre-toxin domain with VENN motif ISU54_11540 PF05594 Haemagluttinin repeat ISU54_11540 PF05860 haemagglutination activity domain ISU54_11540 PF13332 Hemagglutinin repeat ISU54_11540 PF15526 Novel toxin 21 ISU54_11580 PF05860 haemagglutination activity domain ISU54_11580 PF13018 Extended Signal Peptide of Type V secretion system ISU54_11580 PF04829 Pre-toxin domain with VENN motif ISU54_11580 PF13332 Hemagglutinin repeat ISU54_11585 PF08479 POTRA domain, ShlB-type ISU54_11585 PF17287 POTRA domain ISU54_11585 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB ISU54_11590 PF00111 2Fe-2S iron-sulfur cluster binding domain ISU54_11590 PF00970 Oxidoreductase FAD-binding domain ISU54_11590 PF00175 Oxidoreductase NAD-binding domain ISU54_11600 PF02028 BCCT, betaine/carnitine/choline family transporter ISU54_11610 PF00180 Isocitrate/isopropylmalate dehydrogenase ISU54_11615 PF03466 LysR substrate binding domain ISU54_11615 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ISU54_11620 PF00356 Bacterial regulatory proteins, lacI family ISU54_11625 PF02653 Branched-chain amino acid transport system / permease component ISU54_11630 PF00005 ABC transporter ISU54_11635 PF13407 Periplasmic binding protein domain ISU54_11640 PF08240 Alcohol dehydrogenase GroES-like domain ISU54_11640 PF00107 Zinc-binding dehydrogenase ISU54_11660 PF13505 Outer membrane protein beta-barrel domain ISU54_11665 PF00892 EamA-like transporter family ISU54_11675 PF13649 Methyltransferase domain ISU54_11680 PF00210 Ferritin-like domain ISU54_11690 PF00497 Bacterial extracellular solute-binding proteins, family 3 ISU54_11695 PF00528 Binding-protein-dependent transport system inner membrane component ISU54_11700 PF00005 ABC transporter ISU54_11705 PF13426 PAS domain ISU54_11705 PF08447 PAS fold ISU54_11705 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ISU54_11710 PF00665 Integrase core domain ISU54_11710 PF02796 Helix-turn-helix domain of resolvase ISU54_11715 PF01695 IstB-like ATP binding protein ISU54_11725 PF05971 RNA methyltransferase ISU54_11730 PF07338 Protein of unknown function (DUF1471) ISU54_11735 PF02885 Glycosyl transferase family, helical bundle domain ISU54_11745 PF13378 Enolase C-terminal domain-like ISU54_11750 PF00378 Enoyl-CoA hydratase/isomerase ISU54_11755 PF12697 Alpha/beta hydrolase family ISU54_11760 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain ISU54_11760 PF16582 Middle domain of thiamine pyrophosphate ISU54_11760 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain ISU54_11765 PF00425 chorismate binding enzyme ISU54_11775 PF05957 Bacterial protein of unknown function (DUF883) ISU54_11780 PF00920 Dehydratase family ISU54_11785 PF03928 Haem-degrading ISU54_11790 PF07690 Major Facilitator Superfamily ISU54_11795 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ISU54_11795 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain ISU54_11800 PF00356 Bacterial regulatory proteins, lacI family ISU54_11805 PF02638 Glycosyl hydrolase-like 10 ISU54_11820 PF01202 Shikimate kinase ISU54_11825 PF00106 short chain dehydrogenase ISU54_11830 PF04074 YhcH/YjgK/YiaL ISU54_11840 PF00361 Proton-conducting membrane transporter ISU54_11845 PF00361 Proton-conducting membrane transporter ISU54_11850 PF00361 Proton-conducting membrane transporter ISU54_11850 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus ISU54_11855 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L ISU54_11860 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 ISU54_11865 PF12838 4Fe-4S dicluster domain ISU54_11870 PF00146 NADH dehydrogenase ISU54_11875 PF01568 Molydopterin dinucleotide binding domain ISU54_11875 PF04879 Molybdopterin oxidoreductase Fe4S4 domain ISU54_11875 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region ISU54_11875 PF00384 Molybdopterin oxidoreductase ISU54_11880 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit ISU54_11880 PF10531 SLBB domain ISU54_11880 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region ISU54_11890 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit ISU54_11890 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit ISU54_11895 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit ISU54_11900 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 ISU54_11905 PF03466 LysR substrate binding domain ISU54_11905 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ISU54_11910 PF00155 Aminotransferase class I and II ISU54_11920 PF02080 TrkA-C domain ISU54_11920 PF03600 Citrate transporter ISU54_11925 PF13419 Haloacid dehalogenase-like hydrolase ISU54_11930 PF03887 YfbU domain ISU54_11935 PF04217 Protein of unknown function, DUF412 ISU54_11940 PF00871 Acetokinase family ISU54_11945 PF07085 DRTGG domain ISU54_11945 PF01515 Phosphate acetyl/butaryl transferase ISU54_11950 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family ISU54_11950 PF00356 Bacterial regulatory proteins, lacI family ISU54_11955 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 ISU54_11965 PF00872 Transposase, Mutator family ISU54_11970 PF03611 PTS system sugar-specific permease component ISU54_11975 PF00293 NUDIX domain ISU54_11980 PF12850 Calcineurin-like phosphoesterase superfamily domain ISU54_11990 PF01370 NAD dependent epimerase/dehydratase family ISU54_11990 PF08338 Domain of unknown function (DUF1731) ISU54_11995 PF00005 ABC transporter ISU54_12000 PF00528 Binding-protein-dependent transport system inner membrane component ISU54_12005 PF00528 Binding-protein-dependent transport system inner membrane component ISU54_12010 PF00497 Bacterial extracellular solute-binding proteins, family 3 ISU54_12015 PF02441 Flavoprotein ISU54_12020 PF00156 Phosphoribosyl transferase domain ISU54_12025 PF02674 Colicin V production protein ISU54_12030 PF05036 Sporulation related domain ISU54_12035 PF02875 Mur ligase family, glutamate ligase domain ISU54_12035 PF08245 Mur ligase middle domain ISU54_12040 PF01039 Carboxyl transferase domain ISU54_12040 PF17848 Acetyl-coA carboxylase zinc finger domain ISU54_12045 PF09335 SNARE associated Golgi protein ISU54_12050 PF01416 tRNA pseudouridine synthase ISU54_12055 PF02774 Semialdehyde dehydrogenase, dimerisation domain ISU54_12055 PF01118 Semialdehyde dehydrogenase, NAD binding domain ISU54_12060 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ISU54_12060 PF11890 Domain of unknown function (DUF3410) ISU54_12060 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain ISU54_12070 PF00892 EamA-like transporter family ISU54_12080 PF00419 Fimbrial protein ISU54_12085 PF01177 Asp/Glu/Hydantoin racemase ISU54_12090 PF02801 Beta-ketoacyl synthase, C-terminal domain ISU54_12090 PF00109 Beta-ketoacyl synthase, N-terminal domain ISU54_12095 PF01266 FAD dependent oxidoreductase ISU54_12095 PF05430 S-adenosyl-L-methionine-dependent methyltransferase ISU54_12100 PF08891 YfcL protein ISU54_12105 PF04315 Elongation factor P hydroxylase ISU54_12110 PF01925 Sulfite exporter TauE/SafE ISU54_12115 PF03411 Penicillin-insensitive murein endopeptidase ISU54_12120 PF01264 Chorismate synthase ISU54_12125 PF05175 Methyltransferase small domain ISU54_12130 PF01713 Smr domain ISU54_12135 PF00300 Histidine phosphatase superfamily (branch 1) ISU54_12140 PF00378 Enoyl-CoA hydratase/isomerase ISU54_12140 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain ISU54_12140 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ISU54_12145 PF00108 Thiolase, N-terminal domain ISU54_12145 PF02803 Thiolase, C-terminal domain ISU54_12150 PF04175 Protein of unknown function (DUF406) ISU54_12155 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) ISU54_12160 PF04333 MlaA lipoprotein ISU54_12165 PF03918 Cytochrome C biogenesis protein ISU54_12170 PF03918 Cytochrome C biogenesis protein ISU54_12175 PF08534 Redoxin ISU54_12180 PF01578 Cytochrome C assembly protein ISU54_12180 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal ISU54_12185 PF03100 CcmE ISU54_12190 PF04995 Heme exporter protein D (CcmD) ISU54_12195 PF01578 Cytochrome C assembly protein ISU54_12200 PF03379 CcmB protein ISU54_12205 PF00005 ABC transporter ISU54_12220 PF04011 LemA family ISU54_12230 PF08274 PhnA Zinc-Ribbon ISU54_12230 PF03831 PhnA domain ISU54_12245 PF07024 ImpE protein ISU54_12260 PF04717 Type VI secretion system, phage-baseplate injector ISU54_12260 PF06715 Gp5 C-terminal repeat (3 copies) ISU54_12265 PF14331 ImcF-related N-terminal domain ISU54_12265 PF06744 Type VI secretion protein IcmF C-terminal ISU54_12265 PF06761 Intracellular multiplication and human macrophage-killing ISU54_12275 PF01695 IstB-like ATP binding protein ISU54_12280 PF00665 Integrase core domain ISU54_12280 PF02796 Helix-turn-helix domain of resolvase ISU54_12290 PF05936 Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE ISU54_12305 PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath ISU54_12310 PF05591 Type VI secretion system, VipA, VC_A0107 or Hcp2 ISU54_12320 PF13954 PapC N-terminal domain ISU54_12320 PF00577 Outer membrane usher protein ISU54_12320 PF13953 PapC C-terminal domain ISU54_12325 PF00872 Transposase, Mutator family ISU54_12330 PF00577 Outer membrane usher protein ISU54_12330 PF13953 PapC C-terminal domain ISU54_12330 PF13954 PapC N-terminal domain ISU54_12335 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain ISU54_12335 PF02753 Pili assembly chaperone PapD, C-terminal domain ISU54_12340 PF16970 Type-1 fimbrial protein, A ISU54_12345 PF17871 AAA lid domain ISU54_12345 PF10431 C-terminal, D2-small domain, of ClpB protein ISU54_12345 PF07724 AAA domain (Cdc48 subfamily) ISU54_12345 PF00004 ATPase family associated with various cellular activities (AAA) ISU54_12350 PF05947 Type VI secretion system, TssF ISU54_12395 PF13406 Transglycosylase SLT domain ISU54_12405 PF00528 Binding-protein-dependent transport system inner membrane component ISU54_12410 PF00005 ABC transporter ISU54_12420 PF05638 Type VI secretion system effector, Hcp ISU54_12430 PF04879 Molybdopterin oxidoreductase Fe4S4 domain ISU54_12430 PF01568 Molydopterin dinucleotide binding domain ISU54_12430 PF00384 Molybdopterin oxidoreductase ISU54_12435 PF12800 4Fe-4S binding domain ISU54_12435 PF13247 4Fe-4S dicluster domain ISU54_12440 PF04976 DMSO reductase anchor subunit (DmsC) ISU54_12445 PF02613 Nitrate reductase delta subunit ISU54_12455 PF05643 Putative bacterial lipoprotein (DUF799) ISU54_12465 PF03783 Curli production assembly/transport component CsgG ISU54_12475 PF01292 Prokaryotic cytochrome b561 ISU54_12480 PF00155 Aminotransferase class I and II ISU54_12485 PF07350 Protein of unknown function (DUF1479) ISU54_12490 PF02685 Glucokinase ISU54_12500 PF03466 LysR substrate binding domain ISU54_12500 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ISU54_12505 PF00248 Aldo/keto reductase family ISU54_12515 PF01566 Natural resistance-associated macrophage protein ISU54_12520 PF01773 Na+ dependent nucleoside transporter N-terminus ISU54_12520 PF07670 Nucleoside recognition ISU54_12520 PF07662 Na+ dependent nucleoside transporter C-terminus ISU54_12555 PF00749 tRNA synthetases class I (E and Q), catalytic domain ISU54_12560 PF01797 Transposase IS200 like ISU54_12585 PF12843 Putative quorum-sensing-regulated virulence factor ISU54_12590 PF03119 NAD-dependent DNA ligase C4 zinc finger domain ISU54_12590 PF03120 NAD-dependent DNA ligase OB-fold domain ISU54_12590 PF12826 Helix-hairpin-helix motif ISU54_12590 PF01653 NAD-dependent DNA ligase adenylation domain ISU54_12590 PF00533 BRCA1 C Terminus (BRCT) domain ISU54_12595 PF04354 ZipA, C-terminal FtsZ-binding domain ISU54_12605 PF00291 Pyridoxal-phosphate dependent enzyme ISU54_12610 PF00381 PTS HPr component phosphorylation site ISU54_12615 PF02896 PEP-utilising enzyme, TIM barrel domain ISU54_12615 PF00391 PEP-utilising enzyme, mobile domain ISU54_12615 PF05524 PEP-utilising enzyme, N-terminal ISU54_12620 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 ISU54_12625 PF01797 Transposase IS200 like ISU54_12630 PF00512 His Kinase A (phospho-acceptor) domain ISU54_12630 PF00672 HAMP domain ISU54_12630 PF16527 Two-component sensor protein CpxA, periplasmic domain ISU54_12630 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ISU54_12635 PF00486 Transcriptional regulatory protein, C terminal ISU54_12635 PF00072 Response regulator receiver domain ISU54_12640 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion ISU54_12645 PF02687 FtsX-like permease family ISU54_12645 PF00005 ABC transporter ISU54_12645 PF12704 MacB-like periplasmic core domain ISU54_12650 PF07992 Pyridine nucleotide-disulphide oxidoreductase ISU54_12650 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain ISU54_12655 PF00474 Sodium:solute symporter family ISU54_12665 PF00557 Metallopeptidase family M24 ISU54_12675 PF00155 Aminotransferase class I and II ISU54_12685 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ISU54_12685 PF00512 His Kinase A (phospho-acceptor) domain ISU54_12685 PF00672 HAMP domain ISU54_12690 PF00486 Transcriptional regulatory protein, C terminal ISU54_12690 PF00072 Response regulator receiver domain ISU54_12700 PF00291 Pyridoxal-phosphate dependent enzyme ISU54_12705 PF00005 ABC transporter ISU54_12710 PF00528 Binding-protein-dependent transport system inner membrane component ISU54_12715 PF00528 Binding-protein-dependent transport system inner membrane component ISU54_12725 PF07690 Major Facilitator Superfamily ISU54_12730 PF01380 SIS domain ISU54_12730 PF01418 Helix-turn-helix domain, rpiR family ISU54_12735 PF04074 YhcH/YjgK/YiaL ISU54_12740 PF00480 ROK family ISU54_12745 PF12468 Type III secretion system leucine rich repeat protein ISU54_12750 PF04131 Putative N-acetylmannosamine-6-phosphate epimerase ISU54_12755 PF00701 Dihydrodipicolinate synthetase family ISU54_12760 PF04261 Dyp-type peroxidase family ISU54_12765 PF06572 Protein of unknown function (DUF1131) ISU54_12770 PF04076 Bacterial OB fold (BOF) protein ISU54_12775 PF03797 Autotransporter beta-domain ISU54_12775 PF13018 Extended Signal Peptide of Type V secretion system ISU54_12775 PF03212 Pertactin ISU54_12775 PF16168 Adhesin of bacterial autotransporter system, probable stalk ISU54_12785 PF00583 Acetyltransferase (GNAT) family ISU54_12790 PF01218 Coproporphyrinogen III oxidase ISU54_12795 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 ISU54_12800 PF00390 Malic enzyme, N-terminal domain ISU54_12800 PF03949 Malic enzyme, NAD binding domain ISU54_12800 PF01515 Phosphate acetyl/butaryl transferase ISU54_12805 PF00293 NUDIX domain ISU54_12810 PF03264 NapC/NirT cytochrome c family, N-terminal region ISU54_12815 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) ISU54_12825 PF03927 NapD protein ISU54_12830 PF12800 4Fe-4S binding domain ISU54_12830 PF13187 4Fe-4S dicluster domain ISU54_12830 PF00037 4Fe-4S binding domain ISU54_12835 PF00196 Bacterial regulatory proteins, luxR family ISU54_12835 PF00072 Response regulator receiver domain ISU54_12845 PF00873 AcrB/AcrD/AcrF family ISU54_12855 PF04307 LexA-binding, inner membrane-associated putative hydrolase ISU54_12860 PF04055 Radical SAM superfamily ISU54_12860 PF13186 Iron-sulfur cluster-binding domain ISU54_12865 PF00884 Sulfatase ISU54_12875 PF00005 ABC transporter ISU54_12875 PF08402 TOBE domain ISU54_12880 PF00528 Binding-protein-dependent transport system inner membrane component ISU54_12895 PF03960 ArsC family ISU54_12900 PF01546 Peptidase family M20/M25/M40 ISU54_12900 PF07687 Peptidase dimerisation domain ISU54_12905 PF02557 D-alanyl-D-alanine carboxypeptidase ISU54_12910 PF13980 Uncharacterised protein family (UPF0370) ISU54_12915 PF08351 Domain of unknown function (DUF1726) ISU54_12915 PF13718 GNAT acetyltransferase 2 ISU54_12915 PF05127 Helicase ISU54_12915 PF17176 tRNA-binding domain ISU54_12920 PF04284 Protein of unknown function (DUF441) ISU54_12925 PF04228 Putative neutral zinc metallopeptidase ISU54_12930 PF01259 SAICAR synthetase ISU54_12935 PF01797 Transposase IS200 like ISU54_12940 PF06804 NlpB/DapX lipoprotein ISU54_12945 PF00701 Dihydrodipicolinate synthetase family ISU54_12950 PF01842 ACT domain ISU54_12955 PF00578 AhpC/TSA family ISU54_12965 PF01594 AI-2E family transporter ISU54_12970 PF01435 Peptidase family M48 ISU54_12970 PF07720 Tetratricopeptide repeat ISU54_12975 PF03960 ArsC family ISU54_12980 PF00308 Bacterial dnaA protein ISU54_12985 PF01797 Transposase IS200 like ISU54_12995 PF00586 AIR synthase related protein, N-terminal domain ISU54_12995 PF02769 AIR synthase related protein, C-terminal domain ISU54_13000 PF00551 Formyl transferase ISU54_13005 PF13302 Acetyltransferase (GNAT) domain ISU54_13015 PF00005 ABC transporter ISU54_13020 PF00528 Binding-protein-dependent transport system inner membrane component ISU54_13025 PF00528 Binding-protein-dependent transport system inner membrane component ISU54_13030 PF13089 Polyphosphate kinase N-terminal domain ISU54_13030 PF13090 Polyphosphate kinase C-terminal domain 2 ISU54_13030 PF02503 Polyphosphate kinase middle domain ISU54_13030 PF17941 Polyphosphate kinase C-terminal domain 1 ISU54_13035 PF02541 Ppx/GppA phosphatase family ISU54_13045 PF03448 MgtE intracellular N domain ISU54_13045 PF00571 CBS domain ISU54_13045 PF01769 Divalent cation transporter ISU54_13055 PF00528 Binding-protein-dependent transport system inner membrane component ISU54_13060 PF00528 Binding-protein-dependent transport system inner membrane component ISU54_13070 PF00202 Aminotransferase class-III ISU54_13075 PF00155 Aminotransferase class I and II ISU54_13075 PF00392 Bacterial regulatory proteins, gntR family ISU54_13080 PF08402 TOBE domain ISU54_13080 PF00005 ABC transporter ISU54_13085 PF13533 Biotin-lipoyl like ISU54_13090 PF00873 AcrB/AcrD/AcrF family ISU54_13095 PF00873 AcrB/AcrD/AcrF family ISU54_13100 PF07690 Major Facilitator Superfamily ISU54_13110 PF00486 Transcriptional regulatory protein, C terminal ISU54_13110 PF00072 Response regulator receiver domain ISU54_13115 PF07411 Domain of unknown function (DUF1508) ISU54_13120 PF16325 Peptidase family U32 C-terminal domain ISU54_13120 PF01136 Peptidase family U32 ISU54_13125 PF00781 Diacylglycerol kinase catalytic domain ISU54_13145 PF08543 Phosphomethylpyrimidine kinase ISU54_13160 PF00872 Transposase, Mutator family ISU54_13185 PF05638 Type VI secretion system effector, Hcp ISU54_13190 PF01797 Transposase IS200 like ISU54_13195 PF02540 NAD synthase ISU54_13195 PF00958 GMP synthase C terminal domain ISU54_13195 PF00117 Glutamine amidotransferase class-I ISU54_13200 PF00478 IMP dehydrogenase / GMP reductase domain ISU54_13200 PF00571 CBS domain ISU54_13205 PF02601 Exonuclease VII, large subunit ISU54_13205 PF13742 OB-fold nucleic acid binding domain ISU54_13210 PF07191 zinc-ribbons ISU54_13220 PF01926 50S ribosome-binding GTPase ISU54_13220 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal ISU54_13225 PF13360 PQQ-like domain ISU54_13230 PF09976 Tetratricopeptide repeat-like domain ISU54_13235 PF13393 Histidyl-tRNA synthetase ISU54_13235 PF03129 Anticodon binding domain ISU54_13240 PF04551 GcpE protein ISU54_13245 PF13464 Domain of unknown function (DUF4115) ISU54_13255 PF04055 Radical SAM superfamily ISU54_13260 PF00334 Nucleoside diphosphate kinase ISU54_13270 PF16168 Adhesin of bacterial autotransporter system, probable stalk ISU54_13270 PF03212 Pertactin ISU54_13270 PF03797 Autotransporter beta-domain ISU54_13275 PF16168 Adhesin of bacterial autotransporter system, probable stalk ISU54_13275 PF03797 Autotransporter beta-domain ISU54_13275 PF03212 Pertactin ISU54_13290 PF07179 SseB protein N-terminal domain ISU54_13290 PF14581 SseB protein C-terminal domain ISU54_13295 PF12404 Peptidase ISU54_13295 PF00883 Cytosol aminopeptidase family, catalytic domain ISU54_13300 PF04384 Iron-sulphur cluster assembly ISU54_13305 PF00111 2Fe-2S iron-sulfur cluster binding domain ISU54_13310 PF00012 Hsp70 protein ISU54_13315 PF00226 DnaJ domain ISU54_13315 PF07743 HSCB C-terminal oligomerisation domain ISU54_13320 PF01521 Iron-sulphur cluster biosynthesis ISU54_13325 PF01592 NifU-like N terminal domain ISU54_13330 PF00266 Aminotransferase class-V ISU54_13335 PF02082 Transcriptional regulator ISU54_13340 PF00588 SpoU rRNA Methylase family ISU54_13345 PF00459 Inositol monophosphatase family ISU54_13350 PF03824 High-affinity nickel-transport protein ISU54_13355 PF06226 Protein of unknown function (DUF1007) ISU54_13360 PF00874 PRD domain ISU54_13365 PF12832 MFS_1 like family ISU54_13370 PF13505 Outer membrane protein beta-barrel domain ISU54_13380 PF00464 Serine hydroxymethyltransferase ISU54_13385 PF00970 Oxidoreductase FAD-binding domain ISU54_13385 PF00042 Globin ISU54_13385 PF00175 Oxidoreductase NAD-binding domain ISU54_13395 PF01695 IstB-like ATP binding protein ISU54_13400 PF02796 Helix-turn-helix domain of resolvase ISU54_13400 PF00665 Integrase core domain ISU54_13410 PF00543 Nitrogen regulatory protein P-II ISU54_13415 PF00795 Carbon-nitrogen hydrolase ISU54_13415 PF02540 NAD synthase ISU54_13420 PF00072 Response regulator receiver domain ISU54_13420 PF00158 Sigma-54 interaction domain ISU54_13425 PF13942 YfhG lipoprotein ISU54_13430 PF00512 His Kinase A (phospho-acceptor) domain ISU54_13430 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ISU54_13435 PF01797 Transposase IS200 like ISU54_13460 PF02769 AIR synthase related protein, C-terminal domain ISU54_13460 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal ISU54_13460 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain ISU54_13465 PF01464 Transglycosylase SLT domain ISU54_13465 PF00497 Bacterial extracellular solute-binding proteins, family 3 ISU54_13470 PF14437 MafB19-like deaminase ISU54_13480 PF01380 SIS domain ISU54_13485 PF01418 Helix-turn-helix domain, rpiR family ISU54_13485 PF01380 SIS domain ISU54_13490 PF12838 4Fe-4S dicluster domain ISU54_13495 PF01797 Transposase IS200 like ISU54_13500 PF01648 4'-phosphopantetheinyl transferase superfamily ISU54_13505 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ ISU54_13510 PF11967 Recombination protein O N terminal ISU54_13510 PF02565 Recombination protein O C terminal ISU54_13515 PF01926 50S ribosome-binding GTPase ISU54_13515 PF07650 KH domain ISU54_13520 PF14622 Ribonuclease-III-like ISU54_13520 PF00035 Double-stranded RNA binding motif ISU54_13525 PF10502 Signal peptidase, peptidase S26 ISU54_13530 PF00009 Elongation factor Tu GTP binding domain ISU54_13530 PF03144 Elongation factor Tu domain 2 ISU54_13530 PF06421 GTP-binding protein LepA C-terminus ISU54_13530 PF00679 Elongation factor G C-terminus ISU54_13545 PF17188 MucB/RseB C-terminal domain ISU54_13545 PF03888 MucB/RseB N-terminal domain ISU54_13550 PF03872 Anti sigma-E protein RseA, N-terminal domain ISU54_13550 PF03873 Anti sigma-E protein RseA, C-terminal domain ISU54_13555 PF08281 Sigma-70, region 4 ISU54_13555 PF04542 Sigma-70 region 2 ISU54_13560 PF02910 Fumarate reductase flavoprotein C-term ISU54_13560 PF00890 FAD binding domain ISU54_13565 PF05175 Methyltransferase small domain ISU54_13570 PF00270 DEAD/DEAH box helicase ISU54_13570 PF00271 Helicase conserved C-terminal domain ISU54_13575 PF12796 Ankyrin repeats (3 copies) ISU54_13585 PF01228 Glycine radical ISU54_13590 PF03167 Uracil DNA glycosylase superfamily ISU54_13595 PF01470 Pyroglutamyl peptidase ISU54_13610 PF03746 LamB/YcsF family ISU54_13615 PF02626 Carboxyltransferase domain, subdomain A and B ISU54_13630 PF01784 NIF3 (NGG1p interacting factor 3) ISU54_13635 PF02112 cAMP phosphodiesterases class-II ISU54_13640 PF00875 DNA photolyase ISU54_13640 PF03441 FAD binding domain of DNA photolyase ISU54_13645 PF08349 Protein of unknown function (DUF1722) ISU54_13650 PF10725 Protein of unknown function (DUF2517) ISU54_13665 PF03814 Potassium-transporting ATPase A subunit ISU54_13675 PF02669 K+-transporting ATPase, c chain ISU54_13680 PF13492 GAF domain ISU54_13680 PF00512 His Kinase A (phospho-acceptor) domain ISU54_13680 PF02702 Osmosensitive K+ channel His kinase sensor domain ISU54_13680 PF13493 Domain of unknown function (DUF4118) ISU54_13680 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ISU54_13685 PF00072 Response regulator receiver domain ISU54_13685 PF00486 Transcriptional regulatory protein, C terminal ISU54_13700 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I ISU54_13700 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II ISU54_13700 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain ISU54_13700 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III ISU54_13705 PF17206 SeqA protein N-terminal domain ISU54_13705 PF03925 SeqA protein C-terminal domain ISU54_13715 PF04794 YdjC-like protein ISU54_13720 PF07883 Cupin domain ISU54_13720 PF12833 Helix-turn-helix domain ISU54_13725 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit ISU54_13730 PF02378 Phosphotransferase system, EIIC ISU54_13735 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit ISU54_13745 PF02537 CrcB-like protein, Camphor Resistance (CrcB) ISU54_13750 PF02537 CrcB-like protein, Camphor Resistance (CrcB) ISU54_13755 PF07885 Ion channel ISU54_13755 PF02254 TrkA-N domain ISU54_13760 PF06411 HdeA/HdeB family ISU54_13765 PF03824 High-affinity nickel-transport protein ISU54_13770 PF03253 Urea transporter ISU54_13780 PF02492 CobW/HypB/UreG, nucleotide-binding domain ISU54_13785 PF01730 UreF ISU54_13790 PF02814 UreE urease accessory protein, N-terminal domain ISU54_13790 PF05194 UreE urease accessory protein, C-terminal domain ISU54_13795 PF00449 Urease alpha-subunit, N-terminal domain ISU54_13795 PF01979 Amidohydrolase family ISU54_13800 PF00699 Urease beta subunit ISU54_13805 PF00547 Urease, gamma subunit ISU54_13810 PF00005 ABC transporter ISU54_13815 PF00005 ABC transporter ISU54_13820 PF00528 Binding-protein-dependent transport system inner membrane component ISU54_13820 PF12911 N-terminal TM domain of oligopeptide transport permease C ISU54_13825 PF00528 Binding-protein-dependent transport system inner membrane component ISU54_13830 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle ISU54_13835 PF00313 'Cold-shock' DNA-binding domain ISU54_13845 PF06711 Protein of unknown function (DUF1198) ISU54_13850 PF09400 Protein of unknown function (DUF2002) ISU54_13855 PF06392 Acid shock protein repeat ISU54_13870 PF02867 Ribonucleotide reductase, barrel domain ISU54_13870 PF00317 Ribonucleotide reductase, all-alpha domain ISU54_13870 PF08343 Ribonucleotide reductase N-terminal ISU54_13875 PF00268 Ribonucleotide reductase, small chain ISU54_13880 PF00571 CBS domain ISU54_13880 PF00005 ABC transporter ISU54_13885 PF00528 Binding-protein-dependent transport system inner membrane component ISU54_13890 PF04069 Substrate binding domain of ABC-type glycine betaine transport system ISU54_13905 PF00665 Integrase core domain ISU54_13905 PF02796 Helix-turn-helix domain of resolvase ISU54_13910 PF01695 IstB-like ATP binding protein ISU54_13925 PF13356 Arm DNA-binding domain ISU54_13925 PF00589 Phage integrase family ISU54_13935 PF12697 Alpha/beta hydrolase family ISU54_13940 PF01402 Ribbon-helix-helix protein, copG family ISU54_13945 PF00258 Flavodoxin ISU54_13950 PF01475 Ferric uptake regulator family ISU54_13960 PF03573 outer membrane porin, OprD family ISU54_13965 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain ISU54_13965 PF00749 tRNA synthetases class I (E and Q), catalytic domain ISU54_13970 PF01797 Transposase IS200 like ISU54_13975 PF02378 Phosphotransferase system, EIIC ISU54_13975 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 ISU54_13975 PF00367 phosphotransferase system, EIIB ISU54_13980 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase ISU54_13985 PF01979 Amidohydrolase family ISU54_13990 PF00480 ROK family ISU54_13990 PF01047 MarR family ISU54_13995 PF13344 Haloacid dehalogenase-like hydrolase ISU54_14000 PF13537 Glutamine amidotransferase domain ISU54_14000 PF00733 Asparagine synthase ISU54_14035 PF01494 FAD binding domain ISU54_14040 PF04055 Radical SAM superfamily ISU54_14040 PF00919 Uncharacterized protein family UPF0004 ISU54_14040 PF01938 TRAM domain ISU54_14045 PF02562 PhoH-like protein ISU54_14050 PF02130 Uncharacterized protein family UPF0054 ISU54_14055 PF00571 CBS domain ISU54_14055 PF03471 Transporter associated domain ISU54_14060 PF00795 Carbon-nitrogen hydrolase ISU54_14065 PF00497 Bacterial extracellular solute-binding proteins, family 3 ISU54_14070 PF00528 Binding-protein-dependent transport system inner membrane component ISU54_14075 PF00528 Binding-protein-dependent transport system inner membrane component ISU54_14080 PF00005 ABC transporter ISU54_14085 PF07295 Zinc-ribbon containing domain ISU54_14090 PF08264 Anticodon-binding domain of tRNA ISU54_14090 PF00133 tRNA synthetases class I (I, L, M and V) ISU54_14090 PF13603 Leucyl-tRNA synthetase, Domain 2 ISU54_14095 PF04390 Lipopolysaccharide-assembly ISU54_14100 PF06144 DNA polymerase III, delta subunit ISU54_14100 PF14840 Processivity clamp loader gamma complex DNA pol III C-term ISU54_14105 PF01467 Cytidylyltransferase-like ISU54_14115 PF02590 Predicted SPOUT methyltransferase ISU54_14120 PF03717 Penicillin-binding Protein dimerisation domain ISU54_14120 PF00905 Penicillin binding protein transpeptidase domain ISU54_14125 PF01098 Cell cycle protein ISU54_14130 PF03330 Lytic transglycolase ISU54_14130 PF05036 Sporulation related domain ISU54_14135 PF07943 Penicillin-binding protein 5, C-terminal domain ISU54_14135 PF00768 D-alanyl-D-alanine carboxypeptidase ISU54_14140 PF04359 Protein of unknown function (DUF493) ISU54_14145 PF03099 Biotin/lipoate A/B protein ligase family ISU54_14150 PF04055 Radical SAM superfamily ISU54_14150 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family ISU54_14155 PF02416 mttA/Hcf106 family ISU54_14160 PF02537 CrcB-like protein, Camphor Resistance (CrcB) ISU54_14165 PF00313 'Cold-shock' DNA-binding domain ISU54_14170 PF00313 'Cold-shock' DNA-binding domain ISU54_14175 PF00196 Bacterial regulatory proteins, luxR family ISU54_14200 PF00005 ABC transporter ISU54_14200 PF00664 ABC transporter transmembrane region ISU54_14210 PF04962 KduI/IolB family ISU54_14215 PF01261 Xylose isomerase-like TIM barrel ISU54_14220 PF00294 pfkB family carbohydrate kinase ISU54_14225 PF01408 Oxidoreductase family, NAD-binding Rossmann fold ISU54_14225 PF02894 Oxidoreductase family, C-terminal alpha/beta domain ISU54_14230 PF02653 Branched-chain amino acid transport system / permease component ISU54_14235 PF00005 ABC transporter ISU54_14240 PF13407 Periplasmic binding protein domain ISU54_14250 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain ISU54_14250 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain ISU54_14250 PF00205 Thiamine pyrophosphate enzyme, central domain ISU54_14255 PF00171 Aldehyde dehydrogenase family ISU54_14270 PF17972 Bacterial Alpha-2-macroglobulin MG5 domain ISU54_14270 PF11974 Bacterial alpha-2-macroglobulin MG3 domain ISU54_14270 PF01835 MG2 domain ISU54_14270 PF17973 Bacterial Alpha-2-macroglobulin MG10 domain ISU54_14270 PF07703 Alpha-2-macroglobulin bait region domain ISU54_14270 PF00207 Alpha-2-macroglobulin family ISU54_14270 PF17962 Bacterial macroglobulin domain 6 ISU54_14275 PF01797 Transposase IS200 like ISU54_14280 PF06832 Penicillin-Binding Protein C-terminus Family ISU54_14280 PF00912 Transglycosylase ISU54_14280 PF00905 Penicillin binding protein transpeptidase domain ISU54_14285 PF13693 Winged helix-turn-helix DNA-binding ISU54_14305 PF05638 Type VI secretion system effector, Hcp ISU54_14320 PF13018 Extended Signal Peptide of Type V secretion system ISU54_14320 PF03212 Pertactin ISU54_14320 PF16168 Adhesin of bacterial autotransporter system, probable stalk ISU54_14320 PF03797 Autotransporter beta-domain ISU54_14340 PF00872 Transposase, Mutator family ISU54_14355 PF01915 Glycosyl hydrolase family 3 C-terminal domain ISU54_14355 PF14310 Fibronectin type III-like domain ISU54_14355 PF00933 Glycosyl hydrolase family 3 N terminal domain ISU54_14365 PF00248 Aldo/keto reductase family ISU54_14370 PF00248 Aldo/keto reductase family ISU54_14375 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ISU54_14375 PF03466 LysR substrate binding domain ISU54_14380 PF02796 Helix-turn-helix domain of resolvase ISU54_14380 PF00665 Integrase core domain ISU54_14385 PF01695 IstB-like ATP binding protein ISU54_14400 PF00782 Dual specificity phosphatase, catalytic domain ISU54_14405 PF12146 Serine aminopeptidase, S33 ISU54_14405 PF12147 Putative methyltransferase ISU54_14410 PF01553 Acyltransferase ISU54_14420 PF01066 CDP-alcohol phosphatidyltransferase ISU54_14430 PF00589 Phage integrase family ISU54_14460 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain ISU54_14460 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain ISU54_14470 PF01797 Transposase IS200 like ISU54_14475 PF09190 DALR domain ISU54_14475 PF01406 tRNA synthetases class I (C) catalytic domain ISU54_14480 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD ISU54_14485 PF00149 Calcineurin-like phosphoesterase ISU54_14490 PF00731 AIR carboxylase ISU54_14495 PF02222 ATP-grasp domain ISU54_14495 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain ISU54_14505 PF00005 ABC transporter ISU54_14510 PF13472 GDSL-like Lipase/Acylhydrolase family ISU54_14515 PF00106 short chain dehydrogenase ISU54_14520 PF00085 Thioredoxin ISU54_14525 PF01145 SPFH domain / Band 7 family ISU54_14525 PF16200 C-terminal region of band_7 ISU54_14530 PF01957 NfeD-like C-terminal, partner-binding ISU54_14535 PF13411 MerR HTH family regulatory protein ISU54_14540 PF00403 Heavy-metal-associated domain ISU54_14545 PF01963 TraB family ISU54_14550 PF04073 Aminoacyl-tRNA editing domain ISU54_14565 PF07690 Major Facilitator Superfamily ISU54_14570 PF00999 Sodium/hydrogen exchanger family ISU54_14570 PF02254 TrkA-N domain ISU54_14575 PF00294 pfkB family carbohydrate kinase ISU54_14580 PF02706 Chain length determinant protein ISU54_14585 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I ISU54_14585 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II ISU54_14585 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III ISU54_14585 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain ISU54_14590 PF00535 Glycosyl transferase family 2 ISU54_14595 PF01050 Mannose-6-phosphate isomerase ISU54_14595 PF00483 Nucleotidyl transferase ISU54_14600 PF01370 NAD dependent epimerase/dehydratase family ISU54_14610 PF13439 Glycosyltransferase Family 4 ISU54_14610 PF00534 Glycosyl transferases group 1 ISU54_14640 PF01370 NAD dependent epimerase/dehydratase family ISU54_14645 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family ISU54_14650 PF16363 GDP-mannose 4,6 dehydratase ISU54_14655 PF00483 Nucleotidyl transferase ISU54_14660 PF00970 Oxidoreductase FAD-binding domain ISU54_14660 PF00111 2Fe-2S iron-sulfur cluster binding domain ISU54_14660 PF00175 Oxidoreductase NAD-binding domain ISU54_14665 PF00762 Ferrochelatase ISU54_14670 PF05191 Adenylate kinase, active site lid ISU54_14675 PF00183 Hsp90 protein ISU54_14675 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ISU54_14680 PF13662 Toprim domain ISU54_14680 PF02132 RecR protein ISU54_14685 PF02575 YbaB/EbfC DNA-binding family ISU54_14690 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding ISU54_14690 PF12169 DNA polymerase III subunits gamma and tau domain III ISU54_14690 PF12170 DNA polymerase III tau subunit V interacting with alpha ISU54_14695 PF00156 Phosphoribosyl transferase domain ISU54_14700 PF04304 Protein of unknown function (DUF454) ISU54_14710 PF10689 Protein of unknown function (DUF2496) ISU54_14715 PF00924 Mechanosensitive ion channel ISU54_14715 PF12794 Mechanosensitive ion channel inner membrane domain 1 ISU54_14715 PF12795 Mechanosensitive ion channel porin domain ISU54_14720 PF02635 DsrE/DsrF-like family ISU54_14725 PF08361 MAATS-type transcriptional repressor, C-terminal region ISU54_14725 PF00440 Bacterial regulatory proteins, tetR family ISU54_14730 PF00529 HlyD membrane-fusion protein of T1SS ISU54_14730 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion ISU54_14735 PF00873 AcrB/AcrD/AcrF family ISU54_14740 PF01197 Ribosomal protein L31 ISU54_14745 PF00444 Ribosomal protein L36 ISU54_14755 PF10757 Biofilm formation regulator YbaJ ISU54_14760 PF05321 Haemolysin expression modulating protein ISU54_14770 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain ISU54_14775 PF09619 Type III secretion system lipoprotein chaperone (YscW) ISU54_14785 PF00909 Ammonium Transporter Family ISU54_14790 PF00543 Nitrogen regulatory protein P-II ISU54_14795 PF00664 ABC transporter transmembrane region ISU54_14795 PF00005 ABC transporter ISU54_14800 PF00005 ABC transporter ISU54_14800 PF00664 ABC transporter transmembrane region ISU54_14805 PF01037 Lrp/AsnC ligand binding domain ISU54_14805 PF13404 AsnC-type helix-turn-helix domain ISU54_14810 PF00291 Pyridoxal-phosphate dependent enzyme ISU54_14820 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle ISU54_14820 PF12793 Sugar transport-related sRNA regulator N-term ISU54_14825 PF06508 Queuosine biosynthesis protein QueC ISU54_14840 PF13145 PPIC-type PPIASE domain ISU54_14845 PF00216 Bacterial DNA-binding protein ISU54_14850 PF02190 ATP-dependent protease La (LON) substrate-binding domain ISU54_14850 PF00004 ATPase family associated with various cellular activities (AAA) ISU54_14850 PF05362 Lon protease (S16) C-terminal proteolytic domain ISU54_14855 PF06689 ClpX C4-type zinc finger ISU54_14855 PF07724 AAA domain (Cdc48 subfamily) ISU54_14855 PF10431 C-terminal, D2-small domain, of ClpB protein ISU54_14860 PF00574 Clp protease ISU54_14865 PF05697 Bacterial trigger factor protein (TF) ISU54_14865 PF05698 Bacterial trigger factor protein (TF) C-terminus ISU54_14865 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase ISU54_14870 PF01722 BolA-like protein ISU54_14875 PF03923 Uncharacterized lipoprotein ISU54_14875 PF08139 Prokaryotic membrane lipoprotein lipid attachment site ISU54_14880 PF07690 Major Facilitator Superfamily ISU54_14885 PF03502 Nucleoside-specific channel-forming protein, Tsx ISU54_14890 PF06481 COX Aromatic Rich Motif ISU54_14890 PF00116 Cytochrome C oxidase subunit II, periplasmic domain ISU54_14895 PF00115 Cytochrome C and Quinol oxidase polypeptide I ISU54_14900 PF00510 Cytochrome c oxidase subunit III ISU54_14905 PF03626 Prokaryotic Cytochrome C oxidase subunit IV ISU54_14910 PF01040 UbiA prenyltransferase family ISU54_14915 PF07690 Major Facilitator Superfamily ISU54_14920 PF04461 Protein of unknown function (DUF520) ISU54_14925 PF08546 Ketopantoate reductase PanE/ApbA C terminal ISU54_14925 PF02558 Ketopantoate reductase PanE/ApbA ISU54_14930 PF01965 DJ-1/PfpI family ISU54_14935 PF02568 Thiamine biosynthesis protein (ThiI) ISU54_14935 PF02926 THUMP domain ISU54_14940 PF02609 Exonuclease VII small subunit ISU54_14945 PF00348 Polyprenyl synthetase ISU54_14950 PF13292 1-deoxy-D-xylulose-5-phosphate synthase ISU54_14950 PF02779 Transketolase, pyrimidine binding domain ISU54_14950 PF02780 Transketolase, C-terminal domain ISU54_14955 PF01797 Transposase IS200 like ISU54_14960 PF01695 IstB-like ATP binding protein ISU54_14965 PF02796 Helix-turn-helix domain of resolvase ISU54_14965 PF00665 Integrase core domain ISU54_14970 PF04608 Phosphatidylglycerophosphatase A ISU54_14975 PF02769 AIR synthase related protein, C-terminal domain ISU54_14975 PF00586 AIR synthase related protein, N-terminal domain ISU54_14980 PF01029 NusB family ISU54_14985 PF00885 6,7-dimethyl-8-ribityllumazine synthase ISU54_14990 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region ISU54_14990 PF01872 RibD C-terminal domain ISU54_14995 PF03477 ATP cone domain ISU54_15010 PF01797 Transposase IS200 like ISU54_15015 PF07549 SecD/SecF GG Motif ISU54_15015 PF02355 Protein export membrane protein ISU54_15020 PF07549 SecD/SecF GG Motif ISU54_15020 PF13721 SecD export protein N-terminal TM region ISU54_15020 PF02355 Protein export membrane protein ISU54_15025 PF02699 Preprotein translocase subunit ISU54_15030 PF01702 Queuine tRNA-ribosyltransferase ISU54_15035 PF02547 Queuosine biosynthesis protein ISU54_15040 PF04336 Acyl carrier protein phosphodiesterase ISU54_15045 PF10417 C-terminal domain of 1-Cys peroxiredoxin ISU54_15045 PF00578 AhpC/TSA family ISU54_15065 PF00128 Alpha amylase, catalytic domain ISU54_15065 PF02903 Alpha amylase, N-terminal ig-like domain ISU54_15070 PF00324 Amino acid permease ISU54_15075 PF05525 Branched-chain amino acid transport protein ISU54_15080 PF12849 PBP superfamily domain ISU54_15085 PF00512 His Kinase A (phospho-acceptor) domain ISU54_15085 PF00989 PAS fold ISU54_15085 PF11808 Phosphate regulon sensor protein PhoR ISU54_15085 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ISU54_15090 PF00486 Transcriptional regulatory protein, C terminal ISU54_15090 PF00072 Response regulator receiver domain ISU54_15095 PF12320 Type 5 capsule protein repressor C-terminal domain ISU54_15095 PF00149 Calcineurin-like phosphoesterase ISU54_15100 PF13476 AAA domain ISU54_15105 PF00480 ROK family ISU54_15110 PF04381 Putative exonuclease, RdgC ISU54_15115 PF06865 Pyrimidine/purine nucleoside phosphorylase ISU54_15120 PF01202 Shikimate kinase ISU54_15130 PF08241 Methyltransferase domain ISU54_15140 PF07238 PilZ domain ISU54_15140 PF07317 Flagellar regulator YcgR ISU54_15145 PF00171 Aldehyde dehydrogenase family ISU54_15150 PF01472 PUA domain ISU54_15150 PF00696 Amino acid kinase family ISU54_15155 PF07417 Sigma factor-binding transcriptional regulator Crl ISU54_15160 PF06500 Alpha/beta hydrolase of unknown function (DUF1100) ISU54_15165 PF00156 Phosphoribosyl transferase domain ISU54_15180 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ISU54_15180 PF03466 LysR substrate binding domain ISU54_15185 PF07687 Peptidase dimerisation domain ISU54_15185 PF01546 Peptidase family M20/M25/M40 ISU54_15190 PF11799 impB/mucB/samB family C-terminal domain ISU54_15190 PF00817 impB/mucB/samB family ISU54_15190 PF11798 IMS family HHH motif ISU54_15195 PF03009 Glycerophosphoryl diester phosphodiesterase family ISU54_15205 PF02424 ApbE family ISU54_15210 PF00970 Oxidoreductase FAD-binding domain ISU54_15210 PF00175 Oxidoreductase NAD-binding domain ISU54_15210 PF00111 2Fe-2S iron-sulfur cluster binding domain ISU54_15215 PF02508 Rnf-Nqr subunit, membrane protein ISU54_15220 PF02508 Rnf-Nqr subunit, membrane protein ISU54_15225 PF04205 FMN-binding domain ISU54_15230 PF03116 NQR2, RnfD, RnfE family ISU54_15235 PF11973 NQRA C-terminal domain ISU54_15235 PF05896 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) ISU54_15240 PF03734 L,D-transpeptidase catalytic domain ISU54_15245 PF13230 Glutamine amidotransferases class-II ISU54_15250 PF13580 SIS domain ISU54_15255 PF00441 Acyl-CoA dehydrogenase, C-terminal domain ISU54_15255 PF02771 Acyl-CoA dehydrogenase, N-terminal domain ISU54_15255 PF09317 Domain of unknown function (DUF1974) ISU54_15265 PF18254 HMW1 domain 2 ISU54_15265 PF18071 HMW1C N-terminal ISU54_15270 PF05860 haemagglutination activity domain ISU54_15275 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB ISU54_15275 PF08479 POTRA domain, ShlB-type ISU54_15285 PF07687 Peptidase dimerisation domain ISU54_15285 PF01546 Peptidase family M20/M25/M40 ISU54_15290 PF00266 Aminotransferase class-V ISU54_15295 PF02796 Helix-turn-helix domain of resolvase ISU54_15295 PF00665 Integrase core domain ISU54_15300 PF01695 IstB-like ATP binding protein ISU54_15305 PF00266 Aminotransferase class-V ISU54_15310 PF00005 ABC transporter ISU54_15315 PF00528 Binding-protein-dependent transport system inner membrane component ISU54_15320 PF00528 Binding-protein-dependent transport system inner membrane component ISU54_15325 PF00497 Bacterial extracellular solute-binding proteins, family 3 ISU54_15340 PF01425 Amidase ISU54_15350 PF07690 Major Facilitator Superfamily ISU54_15355 PF03591 AzlC protein ISU54_15360 PF05437 Branched-chain amino acid transport protein (AzlD) ISU54_15365 PF01047 MarR family ISU54_15370 PF00529 HlyD membrane-fusion protein of T1SS ISU54_15370 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion ISU54_15375 PF07690 Major Facilitator Superfamily ISU54_15380 PF08032 RNA 2'-O ribose methyltransferase substrate binding ISU54_15380 PF00588 SpoU rRNA Methylase family ISU54_15385 PF00085 Thioredoxin ISU54_15390 PF03942 DTW domain ISU54_15395 PF13607 Succinyl-CoA ligase like flavodoxin domain ISU54_15395 PF13380 CoA binding domain ISU54_15395 PF00583 Acetyltransferase (GNAT) family ISU54_15400 PF13091 PLD-like domain ISU54_15405 PF10043 Predicted periplasmic lipoprotein (DUF2279) ISU54_15435 PF02861 Clp amino terminal domain, pathogenicity island component ISU54_15435 PF10431 C-terminal, D2-small domain, of ClpB protein ISU54_15435 PF17871 AAA lid domain ISU54_15435 PF07724 AAA domain (Cdc48 subfamily) ISU54_15435 PF00004 ATPase family associated with various cellular activities (AAA) ISU54_15440 PF02578 Multi-copper polyphenol oxidoreductase laccase ISU54_15445 PF01479 S4 domain ISU54_15445 PF00849 RNA pseudouridylate synthase ISU54_15450 PF13525 Outer membrane lipoprotein ISU54_15455 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein ISU54_15460 PF01797 Transposase IS200 like ISU54_15470 PF02796 Helix-turn-helix domain of resolvase ISU54_15470 PF00665 Integrase core domain ISU54_15475 PF01695 IstB-like ATP binding protein ISU54_15485 PF01817 Chorismate mutase type II ISU54_15485 PF02153 Prephenate dehydrogenase ISU54_15490 PF00793 DAHP synthetase I family ISU54_15495 PF00072 Response regulator receiver domain ISU54_15495 PF04397 LytTr DNA-binding domain ISU54_15505 PF04338 Protein of unknown function, DUF481 ISU54_15510 PF01797 Transposase IS200 like ISU54_15515 PF01245 Ribosomal protein L19 ISU54_15520 PF01746 tRNA (Guanine-1)-methyltransferase ISU54_15525 PF05239 PRC-barrel domain ISU54_15525 PF01782 RimM N-terminal domain ISU54_15530 PF00886 Ribosomal protein S16 ISU54_15535 PF02881 SRP54-type protein, helical bundle domain ISU54_15535 PF00448 SRP54-type protein, GTPase domain ISU54_15535 PF02978 Signal peptide binding domain ISU54_15540 PF01578 Cytochrome C assembly protein ISU54_15545 PF03471 Transporter associated domain ISU54_15545 PF01595 Cyclin M transmembrane N-terminal domain ISU54_15545 PF00571 CBS domain ISU54_15550 PF01797 Transposase IS200 like ISU54_15555 PF02664 S-Ribosylhomocysteinase (LuxS) ISU54_15560 PF04262 Glutamate-cysteine ligase ISU54_15565 PF09335 SNARE associated Golgi protein ISU54_15570 PF13419 Haloacid dehalogenase-like hydrolase ISU54_15600 PF02599 Global regulator protein family ISU54_15605 PF02272 DHHA1 domain ISU54_15605 PF01411 tRNA synthetases class II (A) ISU54_15605 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain ISU54_15610 PF02631 RecX family ISU54_15615 PF00154 recA bacterial DNA recombination protein ISU54_15620 PF02464 Competence-damaged protein ISU54_15625 PF07690 Major Facilitator Superfamily ISU54_15640 PF00370 FGGY family of carbohydrate kinases, N-terminal domain ISU54_15640 PF02782 FGGY family of carbohydrate kinases, C-terminal domain ISU54_15645 PF02779 Transketolase, pyrimidine binding domain ISU54_15645 PF02780 Transketolase, C-terminal domain ISU54_15650 PF00456 Transketolase, thiamine diphosphate binding domain ISU54_15655 PF02653 Branched-chain amino acid transport system / permease component ISU54_15660 PF00005 ABC transporter ISU54_15670 PF13407 Periplasmic binding protein domain ISU54_15675 PF00141 Peroxidase ISU54_15680 PF07361 Cytochrome b562 ISU54_15685 PF01292 Prokaryotic cytochrome b561 ISU54_15690 PF02613 Nitrate reductase delta subunit ISU54_15695 PF04976 DMSO reductase anchor subunit (DmsC) ISU54_15700 PF13247 4Fe-4S dicluster domain ISU54_15700 PF12800 4Fe-4S binding domain ISU54_15705 PF01568 Molydopterin dinucleotide binding domain ISU54_15705 PF00384 Molybdopterin oxidoreductase ISU54_15705 PF04879 Molybdopterin oxidoreductase Fe4S4 domain ISU54_15710 PF00596 Class II Aldolase and Adducin N-terminal domain ISU54_15715 PF00455 DeoR C terminal sensor domain ISU54_15715 PF08220 DeoR-like helix-turn-helix domain ISU54_15725 PF01797 Transposase IS200 like ISU54_15730 PF00005 ABC transporter ISU54_15735 PF02653 Branched-chain amino acid transport system / permease component ISU54_15740 PF02653 Branched-chain amino acid transport system / permease component ISU54_15745 PF01261 Xylose isomerase-like TIM barrel ISU54_15750 PF02782 FGGY family of carbohydrate kinases, C-terminal domain ISU54_15750 PF00370 FGGY family of carbohydrate kinases, N-terminal domain ISU54_15755 PF05683 Fumarase C-terminus ISU54_15755 PF05681 Fumarate hydratase (Fumerase) ISU54_15765 PF00557 Metallopeptidase family M24 ISU54_15775 PF07715 TonB-dependent Receptor Plug Domain ISU54_15775 PF00593 TonB dependent receptor ISU54_15785 PF14376 Haem-binding domain ISU54_15785 PF03150 Di-haem cytochrome c peroxidase ISU54_15785 PF00034 Cytochrome c ISU54_15790 PF00497 Bacterial extracellular solute-binding proteins, family 3 ISU54_15805 PF01022 Bacterial regulatory protein, arsR family ISU54_15810 PF02040 Arsenical pump membrane protein ISU54_15815 PF04198 Putative sugar-binding domain ISU54_15815 PF13936 Helix-turn-helix domain ISU54_15820 PF02734 DAK2 domain ISU54_15825 PF02733 Dak1 domain ISU54_15835 PF00107 Zinc-binding dehydrogenase ISU54_15835 PF08240 Alcohol dehydrogenase GroES-like domain ISU54_15840 PF02502 Ribose/Galactose Isomerase ISU54_15845 PF05190 MutS family domain IV ISU54_15845 PF00488 MutS domain V ISU54_15845 PF05192 MutS domain III ISU54_15845 PF05188 MutS domain II ISU54_15845 PF01624 MutS domain I ISU54_15850 PF04539 Sigma-70 region 3 ISU54_15850 PF00140 Sigma-70 factor, region 1.2 ISU54_15850 PF04542 Sigma-70 region 2 ISU54_15850 PF04545 Sigma-70, region 4 ISU54_15855 PF01551 Peptidase family M23 ISU54_15855 PF01476 LysM domain ISU54_15865 PF01975 Survival protein SurE ISU54_15870 PF01142 tRNA pseudouridine synthase D (TruD) ISU54_15875 PF02542 YgbB family ISU54_15880 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase ISU54_15885 PF04977 Septum formation initiator ISU54_15890 PF12084 Protein of unknown function (DUF3561) ISU54_15900 PF00009 Elongation factor Tu GTP binding domain ISU54_15905 PF01507 Phosphoadenosine phosphosulfate reductase family ISU54_15940 PF01077 Nitrite and sulphite reductase 4Fe-4S domain ISU54_15940 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain ISU54_15945 PF00667 FAD binding domain ISU54_15945 PF00258 Flavodoxin ISU54_15945 PF00175 Oxidoreductase NAD-binding domain ISU54_15950 PF01242 6-pyruvoyl tetrahydropterin synthase ISU54_15955 PF04055 Radical SAM superfamily ISU54_15960 PF00080 Copper/zinc superoxide dismutase (SODC) ISU54_15965 PF03952 Enolase, N-terminal domain ISU54_15965 PF00113 Enolase, C-terminal TIM barrel domain ISU54_15970 PF00117 Glutamine amidotransferase class-I ISU54_15970 PF06418 CTP synthase N-terminus ISU54_15975 PF03819 MazG nucleotide pyrophosphohydrolase domain ISU54_15980 PF13291 ACT domain ISU54_15980 PF04607 Region found in RelA / SpoT proteins ISU54_15980 PF02824 TGS domain ISU54_15985 PF05958 tRNA (Uracil-5-)-methyltransferase ISU54_15985 PF01938 TRAM domain ISU54_15995 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) ISU54_15995 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ISU54_15995 PF00512 His Kinase A (phospho-acceptor) domain ISU54_15995 PF01627 Hpt domain ISU54_15995 PF00072 Response regulator receiver domain ISU54_15995 PF00672 HAMP domain ISU54_16000 PF00595 PDZ domain ISU54_16005 PF01966 HD domain ISU54_16005 PF13286 Phosphohydrolase-associated domain ISU54_16010 PF01048 Phosphorylase superfamily ISU54_16015 PF01497 Periplasmic binding protein ISU54_16020 PF03458 UPF0126 domain ISU54_16025 PF01521 Iron-sulphur cluster biosynthesis ISU54_16030 PF00654 Voltage gated chloride channel ISU54_16035 PF00202 Aminotransferase class-III ISU54_16040 PF01032 FecCD transport family ISU54_16045 PF01497 Periplasmic binding protein ISU54_16050 PF00005 ABC transporter ISU54_16055 PF00905 Penicillin binding protein transpeptidase domain ISU54_16055 PF14814 Bifunctional transglycosylase second domain ISU54_16055 PF14812 Transmembrane domain of transglycosylase PBP1 at N-terminal ISU54_16055 PF00912 Transglycosylase ISU54_16060 PF08482 ATP-dependent helicase C-terminal ISU54_16060 PF00270 DEAD/DEAH box helicase ISU54_16060 PF00271 Helicase conserved C-terminal domain ISU54_16060 PF04408 Helicase associated domain (HA2) ISU54_16065 PF02834 LigT like Phosphoesterase ISU54_16070 PF17746 SfsA N-terminal OB domain ISU54_16070 PF03749 Sugar fermentation stimulation protein RE domain ISU54_16075 PF01258 Prokaryotic dksA/traR C4-type zinc finger ISU54_16080 PF00749 tRNA synthetases class I (E and Q), catalytic domain ISU54_16085 PF01743 Poly A polymerase head domain ISU54_16085 PF12626 Polymerase A arginine-rich C-terminus ISU54_16085 PF12627 Probable RNA and SrmB- binding site of polymerase A ISU54_16090 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) ISU54_16095 PF02548 Ketopantoate hydroxymethyltransferase ISU54_16100 PF02569 Pantoate-beta-alanine ligase ISU54_16105 PF02261 Aspartate decarboxylase ISU54_16115 PF01061 ABC-2 type transporter ISU54_16120 PF00005 ABC transporter ISU54_16125 PF00484 Carbonic anhydrase ISU54_16130 PF00156 Phosphoribosyl transferase domain ISU54_16135 PF10518 TAT (twin-arginine translocation) pathway signal sequence ISU54_16135 PF07732 Multicopper oxidase ISU54_16135 PF07731 Multicopper oxidase ISU54_16135 PF00394 Multicopper oxidase ISU54_16140 PF09691 Type II secretion system pilotin lipoprotein (PulS_OutS) ISU54_16145 PF17284 Spermidine synthase tetramerisation domain ISU54_16150 PF02675 S-adenosylmethionine decarboxylase ISU54_16155 PF00892 EamA-like transporter family ISU54_16160 PF06062 Uncharacterised protein family (UPF0231) ISU54_16165 PF00330 Aconitase family (aconitate hydratase) ISU54_16165 PF06434 Aconitate hydratase 2 N-terminus ISU54_16165 PF11791 Aconitate B N-terminal domain ISU54_16170 PF01797 Transposase IS200 like ISU54_16175 PF07992 Pyridine nucleotide-disulphide oxidoreductase ISU54_16175 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain ISU54_16180 PF02817 e3 binding domain ISU54_16180 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) ISU54_16180 PF00364 Biotin-requiring enzyme ISU54_16185 PF17831 Pyruvate dehydrogenase E1 component middle domain ISU54_16185 PF00456 Transketolase, thiamine diphosphate binding domain ISU54_16190 PF07729 FCD domain ISU54_16190 PF00392 Bacterial regulatory proteins, gntR family ISU54_16195 PF00324 Amino acid permease ISU54_16200 PF17113 Regulatory signalling modulator protein AmpE ISU54_16205 PF01510 N-acetylmuramoyl-L-alanine amidase ISU54_16210 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain ISU54_16210 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain ISU54_16215 PF07963 Prokaryotic N-terminal methylation motif ISU54_16220 PF00437 Type II/IV secretion system protein ISU54_16220 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain ISU54_16225 PF00482 Type II secretion system (T2SS), protein F ISU54_16230 PF00478 IMP dehydrogenase / GMP reductase domain ISU54_16235 PF01121 Dephospho-CoA kinase ISU54_16240 PF07072 Cell division protein ISU54_16245 PF03884 DNA gyrase inhibitor YacG ISU54_16250 PF01797 Transposase IS200 like ISU54_16255 PF00665 Integrase core domain ISU54_16255 PF02796 Helix-turn-helix domain of resolvase ISU54_16260 PF01695 IstB-like ATP binding protein ISU54_16265 PF08676 MutL C terminal dimerisation domain ISU54_16265 PF01119 DNA mismatch repair protein, C-terminal domain ISU54_16275 PF13356 Arm DNA-binding domain ISU54_16275 PF00589 Phage integrase family ISU54_16285 PF03739 Lipopolysaccharide export system permease LptF/LptG ISU54_16290 PF03739 Lipopolysaccharide export system permease LptF/LptG ISU54_16295 PF00883 Cytosol aminopeptidase family, catalytic domain ISU54_16295 PF02789 Cytosol aminopeptidase family, N-terminal domain ISU54_16300 PF04364 DNA polymerase III chi subunit, HolC ISU54_16305 PF08264 Anticodon-binding domain of tRNA ISU54_16305 PF10458 Valyl tRNA synthetase tRNA binding arm ISU54_16305 PF00133 tRNA synthetases class I (I, L, M and V) ISU54_16310 PF00583 Acetyltransferase (GNAT) family ISU54_16315 PF06877 Regulator of ribonuclease activity B ISU54_16320 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain ISU54_16320 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain ISU54_16325 PF04074 YhcH/YjgK/YiaL ISU54_16335 PF00528 Binding-protein-dependent transport system inner membrane component ISU54_16340 PF12911 N-terminal TM domain of oligopeptide transport permease C ISU54_16340 PF00528 Binding-protein-dependent transport system inner membrane component ISU54_16345 PF08352 Oligopeptide/dipeptide transporter, C-terminal region ISU54_16345 PF00005 ABC transporter ISU54_16350 PF00005 ABC transporter ISU54_16350 PF08352 Oligopeptide/dipeptide transporter, C-terminal region ISU54_16355 PF13597 Anaerobic ribonucleoside-triphosphate reductase ISU54_16355 PF03477 ATP cone domain ISU54_16365 PF00392 Bacterial regulatory proteins, gntR family ISU54_16365 PF07702 UTRA domain ISU54_16370 PF06754 Phosphonate metabolism protein PhnG ISU54_16375 PF05845 Bacterial phosphonate metabolism protein (PhnH) ISU54_16380 PF05861 Bacterial phosphonate metabolism protein (PhnI) ISU54_16385 PF06007 Phosphonate metabolism protein PhnJ ISU54_16390 PF00005 ABC transporter ISU54_16395 PF00005 ABC transporter ISU54_16400 PF07969 Amidohydrolase family ISU54_16410 PF12706 Beta-lactamase superfamily domain ISU54_16415 PF13460 NAD(P)H-binding ISU54_16430 PF00005 ABC transporter ISU54_16430 PF17912 MalK OB fold domain ISU54_16430 PF03459 TOBE domain ISU54_16435 PF00528 Binding-protein-dependent transport system inner membrane component ISU54_16440 PF00528 Binding-protein-dependent transport system inner membrane component ISU54_16445 PF13416 Bacterial extracellular solute-binding protein ISU54_16460 PF01541 GIY-YIG catalytic domain ISU54_16465 PF13508 Acetyltransferase (GNAT) domain ISU54_16470 PF02036 SCP-2 sterol transfer family ISU54_16475 PF01136 Peptidase family U32 ISU54_16480 PF01136 Peptidase family U32 ISU54_16485 PF08139 Prokaryotic membrane lipoprotein lipid attachment site ISU54_16485 PF02321 Outer membrane efflux protein ISU54_16490 PF00873 AcrB/AcrD/AcrF family ISU54_16495 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion ISU54_16495 PF00529 HlyD membrane-fusion protein of T1SS ISU54_16500 PF00296 Luciferase-like monooxygenase ISU54_16510 PF01381 Helix-turn-helix ISU54_16520 PF03880 DbpA RNA binding domain ISU54_16520 PF12343 Cold shock protein DEAD box A ISU54_16520 PF00271 Helicase conserved C-terminal domain ISU54_16520 PF00270 DEAD/DEAH box helicase ISU54_16530 PF13181 Tetratricopeptide repeat ISU54_16530 PF07719 Tetratricopeptide repeat ISU54_16535 PF00013 KH domain ISU54_16535 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain ISU54_16535 PF01138 3' exoribonuclease family, domain 1 ISU54_16535 PF03725 3' exoribonuclease family, domain 2 ISU54_16535 PF00575 S1 RNA binding domain ISU54_16545 PF00312 Ribosomal protein S15 ISU54_16550 PF01509 TruB family pseudouridylate synthase (N terminal domain) ISU54_16550 PF16198 tRNA pseudouridylate synthase B C-terminal domain ISU54_16550 PF09157 Pseudouridine synthase II TruB, C-terminal ISU54_16555 PF02033 Ribosome-binding factor A ISU54_16560 PF04760 Translation initiation factor IF-2, N-terminal region ISU54_16560 PF08364 Bacterial translation initiation factor IF-2 associated region ISU54_16560 PF11987 Translation-initiation factor 2 ISU54_16560 PF03144 Elongation factor Tu domain 2 ISU54_16560 PF00009 Elongation factor Tu GTP binding domain ISU54_16565 PF00575 S1 RNA binding domain ISU54_16565 PF08529 NusA N-terminal domain ISU54_16565 PF13184 NusA-like KH domain ISU54_16570 PF02576 RimP N-terminal domain ISU54_16570 PF17384 RimP C-terminal SH3 domain ISU54_16585 PF03840 Preprotein translocase SecG subunit ISU54_16590 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I ISU54_16590 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II ISU54_16590 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III ISU54_16590 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain ISU54_16595 PF00809 Pterin binding enzyme ISU54_16600 PF17862 AAA+ lid domain ISU54_16600 PF01434 Peptidase family M41 ISU54_16600 PF06480 FtsH Extracellular ISU54_16600 PF00004 ATPase family associated with various cellular activities (AAA) ISU54_16605 PF01728 FtsJ-like methyltransferase ISU54_16610 PF01985 CRS1 / YhbY (CRM) domain ISU54_16615 PF01272 Transcription elongation factor, GreA/GreB, C-term ISU54_16615 PF03449 Transcription elongation factor, N-terminal ISU54_16620 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family ISU54_16625 PF00072 Response regulator receiver domain ISU54_16625 PF00486 Transcriptional regulatory protein, C terminal ISU54_16630 PF00512 His Kinase A (phospho-acceptor) domain ISU54_16630 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ISU54_16630 PF00672 HAMP domain ISU54_16635 PF01018 GTP1/OBG ISU54_16635 PF01926 50S ribosome-binding GTPase ISU54_16640 PF00892 EamA-like transporter family ISU54_16645 PF01016 Ribosomal L27 protein ISU54_16650 PF00829 Ribosomal prokaryotic L21 protein ISU54_16655 PF00348 Polyprenyl synthetase ISU54_16665 PF13693 Winged helix-turn-helix DNA-binding ISU54_16670 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain ISU54_16670 PF00056 lactate/malate dehydrogenase, NAD binding domain ISU54_16675 PF02863 Arginine repressor, C-terminal domain ISU54_16675 PF01316 Arginine repressor, DNA binding domain ISU54_16685 PF08245 Mur ligase middle domain ISU54_16685 PF02875 Mur ligase family, glutamate ligase domain ISU54_16685 PF01225 Mur ligase family, catalytic domain ISU54_16690 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain ISU54_16695 PF00719 Inorganic pyrophosphatase ISU54_16700 PF06094 Gamma-glutamyl cyclotransferase, AIG2-like ISU54_16705 PF04357 TamB, inner membrane protein subunit of TAM complex ISU54_16710 PF01103 Surface antigen ISU54_16710 PF17243 POTRA domain TamA domain 1 ISU54_16710 PF07244 Surface antigen variable number repeat ISU54_16715 PF01625 Peptide methionine sulfoxide reductase ISU54_16720 PF00571 CBS domain ISU54_16720 PF03471 Transporter associated domain ISU54_16720 PF01595 Cyclin M transmembrane N-terminal domain ISU54_16725 PF06526 Protein of unknown function (DUF1107) ISU54_16730 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) ISU54_16735 PF00459 Inositol monophosphatase family ISU54_16740 PF02872 5'-nucleotidase, C-terminal domain ISU54_16740 PF00149 Calcineurin-like phosphoesterase ISU54_16745 PF01814 Hemerythrin HHE cation binding domain ISU54_16745 PF04405 Domain of Unknown function (DUF542) ISU54_16750 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase ISU54_16750 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase ISU54_16755 PF04225 Opacity-associated protein A LysM-like domain ISU54_16755 PF08525 Opacity-associated protein A N-terminal motif ISU54_16765 PF01797 Transposase IS200 like ISU54_16770 PF03948 Ribosomal protein L9, C-terminal domain ISU54_16770 PF01281 Ribosomal protein L9, N-terminal domain ISU54_16775 PF01084 Ribosomal protein S18 ISU54_16780 PF00436 Single-strand binding protein family ISU54_16785 PF01250 Ribosomal protein S6 ISU54_16790 PF00326 Prolyl oligopeptidase family ISU54_16795 PF00665 Integrase core domain ISU54_16795 PF02796 Helix-turn-helix domain of resolvase ISU54_16800 PF01695 IstB-like ATP binding protein ISU54_16810 PF07338 Protein of unknown function (DUF1471) ISU54_16815 PF00441 Acyl-CoA dehydrogenase, C-terminal domain ISU54_16815 PF02770 Acyl-CoA dehydrogenase, middle domain ISU54_16815 PF18158 Adaptive response protein AidB N-terminal domain ISU54_16820 PF00588 SpoU rRNA Methylase family ISU54_16820 PF08032 RNA 2'-O ribose methyltransferase substrate binding ISU54_16825 PF08206 Ribonuclease B OB domain ISU54_16825 PF17876 Cold shock domain ISU54_16825 PF08461 Ribonuclease R winged-helix domain ISU54_16825 PF00773 RNB domain ISU54_16825 PF00575 S1 RNA binding domain ISU54_16830 PF02082 Transcriptional regulator ISU54_16835 PF00709 Adenylosuccinate synthetase ISU54_16840 PF09838 Uncharacterized protein conserved in bacteria (DUF2065) ISU54_16845 PF01145 SPFH domain / Band 7 family ISU54_16850 PF12221 Bacterial membrane protein N terminal ISU54_16850 PF01145 SPFH domain / Band 7 family ISU54_16855 PF13167 GTP-binding GTPase N-terminal ISU54_16855 PF16360 GTP-binding GTPase Middle Region ISU54_16855 PF01926 50S ribosome-binding GTPase ISU54_16860 PF17209 Hfq protein ISU54_16870 PF08676 MutL C terminal dimerisation domain ISU54_16870 PF01119 DNA mismatch repair protein, C-terminal domain ISU54_16875 PF01520 N-acetylmuramoyl-L-alanine amidase ISU54_16880 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE ISU54_16885 PF01256 Carbohydrate kinase ISU54_16885 PF03853 YjeF-related protein N-terminus ISU54_16890 PF08331 Domain of unknown function (DUF1730) ISU54_16905 PF00929 Exonuclease ISU54_16910 PF03193 RsgA GTPase ISU54_16915 PF02666 Phosphatidylserine decarboxylase ISU54_16920 PF12795 Mechanosensitive ion channel porin domain ISU54_16920 PF00924 Mechanosensitive ion channel ISU54_16920 PF12794 Mechanosensitive ion channel inner membrane domain 1 ISU54_16925 PF00152 tRNA synthetases class II (D, K and N) ISU54_16935 PF02910 Fumarate reductase flavoprotein C-term ISU54_16935 PF00890 FAD binding domain ISU54_16940 PF13085 2Fe-2S iron-sulfur cluster binding domain ISU54_16940 PF13183 4Fe-4S dicluster domain ISU54_16945 PF02300 Fumarate reductase subunit C ISU54_16950 PF02313 Fumarate reductase subunit D ISU54_16955 PF00893 Small Multidrug Resistance protein ISU54_16960 PF08207 Elongation factor P (EF-P) KOW-like domain ISU54_16960 PF09285 Elongation factor P, C-terminal ISU54_16960 PF01132 Elongation factor P (EF-P) OB domain ISU54_16965 PF04055 Radical SAM superfamily ISU54_16970 PF13698 Domain of unknown function (DUF4156) ISU54_16975 PF00118 TCP-1/cpn60 chaperonin family ISU54_16980 PF00166 Chaperonin 10 Kd subunit ISU54_16985 PF04186 FxsA cytoplasmic membrane protein ISU54_16990 PF10415 Fumarase C C-terminus ISU54_16990 PF00206 Lyase ISU54_16995 PF03605 Anaerobic c4-dicarboxylate membrane transporter ISU54_17000 PF03091 CutA1 divalent ion tolerance protein ISU54_17005 PF02683 Cytochrome C biogenesis protein transmembrane region ISU54_17005 PF11412 Disulphide bond corrector protein DsbC ISU54_17010 PF01568 Molydopterin dinucleotide binding domain ISU54_17010 PF00384 Molybdopterin oxidoreductase ISU54_17010 PF04879 Molybdopterin oxidoreductase Fe4S4 domain ISU54_17015 PF13247 4Fe-4S dicluster domain ISU54_17015 PF12800 4Fe-4S binding domain ISU54_17020 PF07992 Pyridine nucleotide-disulphide oxidoreductase ISU54_17020 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster ISU54_17020 PF13247 4Fe-4S dicluster domain ISU54_17050 PF06379 L-rhamnose-proton symport protein (RhaT) ISU54_17055 PF12833 Helix-turn-helix domain ISU54_17055 PF02311 AraC-like ligand binding domain ISU54_17060 PF02311 AraC-like ligand binding domain ISU54_17060 PF12833 Helix-turn-helix domain ISU54_17070 PF02782 FGGY family of carbohydrate kinases, C-terminal domain ISU54_17070 PF00370 FGGY family of carbohydrate kinases, N-terminal domain ISU54_17075 PF06134 L-rhamnose isomerase (RhaA) ISU54_17080 PF00596 Class II Aldolase and Adducin N-terminal domain ISU54_17085 PF00465 Iron-containing alcohol dehydrogenase ISU54_17090 PF05336 L-rhamnose mutarotase ISU54_17095 PF00436 Single-strand binding protein family ISU54_17100 PF17755 UvrA DNA-binding domain ISU54_17100 PF00005 ABC transporter ISU54_17100 PF17760 UvrA interaction domain ISU54_17105 PF04237 YjbR ISU54_17110 PF00155 Aminotransferase class I and II ISU54_17115 PF00842 Alanine racemase, C-terminal domain ISU54_17115 PF01168 Alanine racemase, N-terminal domain ISU54_17120 PF00772 DnaB-like helicase N terminal domain ISU54_17120 PF03796 DnaB-like helicase C terminal domain ISU54_17125 PF08240 Alcohol dehydrogenase GroES-like domain ISU54_17125 PF00107 Zinc-binding dehydrogenase ISU54_17130 PF09583 Phage shock protein G (Phageshock_PspG) ISU54_17135 PF01207 Dihydrouridine synthase (Dus) ISU54_17140 PF01475 Ferric uptake regulator family ISU54_17145 PF01726 LexA DNA binding domain ISU54_17145 PF00717 Peptidase S24-like ISU54_17150 PF01219 Prokaryotic diacylglycerol kinase ISU54_17155 PF01553 Acyltransferase ISU54_17160 PF01040 UbiA prenyltransferase family ISU54_17165 PF04345 Chorismate lyase ISU54_17170 PF12951 Passenger-associated-transport-repeat ISU54_17175 PF08031 Berberine and berberine like ISU54_17175 PF01565 FAD binding domain ISU54_17190 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain ISU54_17195 PF13953 PapC C-terminal domain ISU54_17195 PF00577 Outer membrane usher protein ISU54_17195 PF13954 PapC N-terminal domain ISU54_17205 PF02342 TerD domain ISU54_17210 PF02342 TerD domain ISU54_17215 PF03741 Integral membrane protein TerC family ISU54_17220 PF05099 Tellurite resistance protein TerB ISU54_17225 PF02342 TerD domain ISU54_17230 PF02342 TerD domain ISU54_17250 PF15608 PELOTA RNA binding domain ISU54_17250 PF11202 Phosphoribosyl transferase (PRTase) ISU54_17270 PF04055 Radical SAM superfamily ISU54_17275 PF06228 Haem utilisation ChuX/HutX ISU54_17280 PF13460 NAD(P)H-binding ISU54_17290 PF07715 TonB-dependent Receptor Plug Domain ISU54_17290 PF00593 TonB dependent receptor ISU54_17295 PF05171 Haemin-degrading HemS.ChuX domain ISU54_17300 PF01497 Periplasmic binding protein ISU54_17305 PF01032 FecCD transport family ISU54_17310 PF00005 ABC transporter ISU54_17315 PF01053 Cys/Met metabolism PLP-dependent enzyme ISU54_17320 PF03222 Tryptophan/tyrosine permease family ISU54_17325 PF03466 LysR substrate binding domain ISU54_17325 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ISU54_17330 PF01206 Sulfurtransferase TusA ISU54_17335 PF04143 Sulphur transport ISU54_17340 PF01312 FlhB HrpN YscU SpaS Family ISU54_17345 PF01311 Bacterial export proteins, family 1 ISU54_17350 PF01313 Bacterial export proteins, family 3 ISU54_17355 PF00813 FliP family ISU54_17360 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term ISU54_17375 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain ISU54_17375 PF18269 T3SS EscN ATPase C-terminal domain ISU54_17380 PF00771 FHIPEP family ISU54_17430 PF00263 Bacterial type II and III secretion system protein ISU54_17430 PF03958 Bacterial type II/III secretion system short domain ISU54_17435 PF00072 Response regulator receiver domain ISU54_17435 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ISU54_17435 PF00512 His Kinase A (phospho-acceptor) domain ISU54_17435 PF01627 Hpt domain ISU54_17435 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) ISU54_17435 PF00672 HAMP domain ISU54_17440 PF00196 Bacterial regulatory proteins, luxR family ISU54_17440 PF00072 Response regulator receiver domain ISU54_17445 PF00375 Sodium:dicarboxylate symporter family ISU54_17450 PF16177 Acetyl-coenzyme A synthetase N-terminus ISU54_17450 PF00501 AMP-binding enzyme ISU54_17450 PF13193 AMP-binding enzyme C-terminal domain ISU54_17455 PF04341 Protein of unknown function, DUF485 ISU54_17460 PF00474 Sodium:solute symporter family ISU54_17470 PF02796 Helix-turn-helix domain of resolvase ISU54_17470 PF00665 Integrase core domain ISU54_17475 PF01695 IstB-like ATP binding protein ISU54_17510 PF02142 MGS-like domain ISU54_17510 PF01808 AICARFT/IMPCHase bienzyme ISU54_17515 PF02844 Phosphoribosylglycinamide synthetase, N domain ISU54_17515 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain ISU54_17515 PF02843 Phosphoribosylglycinamide synthetase, C domain ISU54_17520 PF07356 Protein of unknown function (DUF1481) ISU54_17525 PF00216 Bacterial DNA-binding protein ISU54_17530 PF04222 Protein of unknown function (DUF416) ISU54_17535 PF04493 Endonuclease V ISU54_17540 PF01208 Uroporphyrinogen decarboxylase (URO-D) ISU54_17550 PF00293 NUDIX domain ISU54_17550 PF09297 NADH pyrophosphatase zinc ribbon domain ISU54_17555 PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ ISU54_17560 PF01964 Radical SAM ThiC family ISU54_17560 PF13667 ThiC-associated domain ISU54_17565 PF02581 Thiamine monophosphate synthase ISU54_17570 PF00899 ThiF family ISU54_17580 PF05690 Thiazole biosynthesis protein ThiG ISU54_17585 PF04055 Radical SAM superfamily ISU54_17585 PF06968 Biotin and Thiamin Synthesis associated domain ISU54_17590 PF01797 Transposase IS200 like ISU54_17595 PF04997 RNA polymerase Rpb1, domain 1 ISU54_17595 PF05000 RNA polymerase Rpb1, domain 4 ISU54_17595 PF00623 RNA polymerase Rpb1, domain 2 ISU54_17595 PF04983 RNA polymerase Rpb1, domain 3 ISU54_17595 PF04998 RNA polymerase Rpb1, domain 5 ISU54_17600 PF04560 RNA polymerase Rpb2, domain 7 ISU54_17600 PF00562 RNA polymerase Rpb2, domain 6 ISU54_17600 PF10385 RNA polymerase beta subunit external 1 domain ISU54_17600 PF04565 RNA polymerase Rpb2, domain 3 ISU54_17600 PF04561 RNA polymerase Rpb2, domain 2 ISU54_17600 PF04563 RNA polymerase beta subunit ISU54_17605 PF00542 Ribosomal protein L7/L12 C-terminal domain ISU54_17605 PF16320 Ribosomal protein L7/L12 dimerisation domain ISU54_17610 PF00466 Ribosomal protein L10 ISU54_17615 PF00687 Ribosomal protein L1p/L10e family ISU54_17620 PF00298 Ribosomal protein L11, RNA binding domain ISU54_17620 PF03946 Ribosomal protein L11, N-terminal domain ISU54_17625 PF02357 Transcription termination factor nusG ISU54_17625 PF00467 KOW motif ISU54_17630 PF00584 SecE/Sec61-gamma subunits of protein translocation complex ISU54_17635 PF03144 Elongation factor Tu domain 2 ISU54_17635 PF00009 Elongation factor Tu GTP binding domain ISU54_17635 PF03143 Elongation factor Tu C-terminal domain ISU54_17660 PF01695 IstB-like ATP binding protein ISU54_17665 PF02796 Helix-turn-helix domain of resolvase ISU54_17665 PF00665 Integrase core domain ISU54_17670 PF13673 Acetyltransferase (GNAT) domain ISU54_17675 PF00485 Phosphoribulokinase / Uridine kinase family ISU54_17680 PF02237 Biotin protein ligase C terminal domain ISU54_17680 PF08279 HTH domain ISU54_17680 PF03099 Biotin/lipoate A/B protein ligase family ISU54_17685 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain ISU54_17685 PF01565 FAD binding domain ISU54_17715 PF12724 Flavodoxin domain ISU54_17720 PF02386 Cation transport protein ISU54_17730 PF01797 Transposase IS200 like ISU54_17735 PF01205 Uncharacterized protein family UPF0029 ISU54_17735 PF09186 Domain of unknown function (DUF1949) ISU54_17740 PF00557 Metallopeptidase family M24 ISU54_17745 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ISU54_17745 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain ISU54_17745 PF00378 Enoyl-CoA hydratase/isomerase ISU54_17750 PF00108 Thiolase, N-terminal domain ISU54_17750 PF02803 Thiolase, C-terminal domain ISU54_17755 PF00970 Oxidoreductase FAD-binding domain ISU54_17755 PF00175 Oxidoreductase NAD-binding domain ISU54_17760 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase ISU54_17765 PF02357 Transcription termination factor nusG ISU54_17770 PF00490 Delta-aminolevulinic acid dehydratase ISU54_17775 PF01026 TatD related DNase ISU54_17780 PF01695 IstB-like ATP binding protein ISU54_17785 PF00665 Integrase core domain ISU54_17785 PF02796 Helix-turn-helix domain of resolvase ISU54_17795 PF00902 Sec-independent protein translocase protein (TatC) ISU54_17805 PF02416 mttA/Hcf106 family ISU54_17810 PF03109 ABC1 family ISU54_17815 PF02036 SCP-2 sterol transfer family ISU54_17820 PF01209 ubiE/COQ5 methyltransferase family ISU54_17825 PF02646 RmuC family ISU54_17830 PF09335 SNARE associated Golgi protein ISU54_17835 PF13722 5TM C-terminal transporter carbon starvation CstA ISU54_17835 PF02554 Carbon starvation protein CstA ISU54_17845 PF01048 Phosphorylase superfamily ISU54_17850 PF01738 Dienelactone hydrolase family ISU54_17855 PF08267 Cobalamin-independent synthase, N-terminal domain ISU54_17855 PF01717 Cobalamin-independent synthase, Catalytic domain ISU54_17860 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ISU54_17860 PF03466 LysR substrate binding domain ISU54_17865 PF00892 EamA-like transporter family ISU54_17870 PF03547 Membrane transport protein ISU54_17875 PF03009 Glycerophosphoryl diester phosphodiesterase family ISU54_17880 PF00005 ABC transporter ISU54_17880 PF17912 MalK OB fold domain ISU54_17885 PF00528 Binding-protein-dependent transport system inner membrane component ISU54_17890 PF00528 Binding-protein-dependent transport system inner membrane component ISU54_17895 PF13416 Bacterial extracellular solute-binding protein ISU54_17935 PF00005 ABC transporter ISU54_17940 PF12399 Branched-chain amino acid ATP-binding cassette transporter ISU54_17940 PF00005 ABC transporter ISU54_17945 PF02653 Branched-chain amino acid transport system / permease component ISU54_17945 PF11862 Domain of unknown function (DUF3382) ISU54_17950 PF02653 Branched-chain amino acid transport system / permease component ISU54_17955 PF13458 Periplasmic binding protein ISU54_17960 PF12568 Acetyltransferase (GNAT) domain, PanZ ISU54_17965 PF01797 Transposase IS200 like ISU54_17970 PF04542 Sigma-70 region 2 ISU54_17970 PF04545 Sigma-70, region 4 ISU54_17970 PF00140 Sigma-70 factor, region 1.2 ISU54_17975 PF02687 FtsX-like permease family ISU54_17975 PF18075 FtsX extracellular domain ISU54_17980 PF00005 ABC transporter ISU54_17985 PF00448 SRP54-type protein, GTPase domain ISU54_17985 PF02881 SRP54-type protein, helical bundle domain ISU54_17985 PF02881 SRP54-type protein, helical bundle domain ISU54_17985 PF00448 SRP54-type protein, GTPase domain ISU54_17995 PF06611 Protein of unknown function (DUF1145) ISU54_18010 PF07947 YhhN family ISU54_18015 PF00403 Heavy-metal-associated domain ISU54_18020 PF01206 Sulfurtransferase TusA ISU54_18025 PF02592 Putative vitamin uptake transporter ISU54_18030 PF08786 DcrB ISU54_18035 PF13183 4Fe-4S dicluster domain ISU54_18035 PF02754 Cysteine-rich domain ISU54_18040 PF00890 FAD binding domain ISU54_18045 PF04324 BFD-like [2Fe-2S] binding domain ISU54_18045 PF01266 FAD dependent oxidoreductase ISU54_18050 PF03009 Glycerophosphoryl diester phosphodiesterase family ISU54_18065 PF12146 Serine aminopeptidase, S33 ISU54_18070 PF01810 LysE type translocator ISU54_18075 PF01810 LysE type translocator ISU54_18080 PF00270 DEAD/DEAH box helicase ISU54_18080 PF00271 Helicase conserved C-terminal domain ISU54_18080 PF16124 RecQ zinc-binding ISU54_18080 PF00570 HRDC domain ISU54_18080 PF09382 RQC domain ISU54_18085 PF02253 Phospholipase A1 ISU54_18090 PF03061 Thioesterase superfamily ISU54_18095 PF00892 EamA-like transporter family ISU54_18100 PF01544 CorA-like Mg2+ transporter protein ISU54_18105 PF09370 Phosphoenolpyruvate hydrolase-like ISU54_18120 PF00580 UvrD/REP helicase N-terminal domain ISU54_18120 PF13361 UvrD-like helicase C-terminal domain ISU54_18125 PF13419 Haloacid dehalogenase-like hydrolase ISU54_18130 PF00589 Phage integrase family ISU54_18130 PF02899 Phage integrase, N-terminal SAM-like domain ISU54_18135 PF04340 Protein of unknown function, DUF484 ISU54_18140 PF01678 Diaminopimelate epimerase ISU54_18145 PF13627 Prokaryotic lipoprotein-attachment site ISU54_18150 PF01491 Frataxin-like domain ISU54_18155 PF01295 Adenylate cyclase, class-I ISU54_18155 PF12633 Adenylate cyclase NT domain ISU54_18165 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain ISU54_18165 PF03900 Porphobilinogen deaminase, C-terminal domain ISU54_18170 PF02602 Uroporphyrinogen-III synthase HemD ISU54_18175 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase ISU54_18180 PF07719 Tetratricopeptide repeat ISU54_18180 PF07219 HemY protein N-terminus ISU54_18185 PF01797 Transposase IS200 like ISU54_18210 PF00324 Amino acid permease ISU54_18215 PF03808 Glycosyl transferase WecB/TagA/CpsF family ISU54_18220 PF06899 WzyE protein, O-antigen assembly polymerase ISU54_18225 PF07429 4-alpha-L-fucosyltransferase glycosyl transferase group 56 ISU54_18230 PF01943 Polysaccharide biosynthesis protein ISU54_18235 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family ISU54_18245 PF00483 Nucleotidyl transferase ISU54_18250 PF16363 GDP-mannose 4,6 dehydratase ISU54_18255 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain ISU54_18255 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain ISU54_18255 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain ISU54_18260 PF02350 UDP-N-acetylglucosamine 2-epimerase ISU54_18265 PF02706 Chain length determinant protein ISU54_18270 PF00953 Glycosyl transferase family 4 ISU54_18275 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain ISU54_18275 PF07497 Rho termination factor, RNA-binding domain ISU54_18275 PF07498 Rho termination factor, N-terminal domain ISU54_18280 PF00085 Thioredoxin ISU54_18285 PF00270 DEAD/DEAH box helicase ISU54_18285 PF00271 Helicase conserved C-terminal domain ISU54_18295 PF13361 UvrD-like helicase C-terminal domain ISU54_18295 PF00580 UvrD/REP helicase N-terminal domain ISU54_18315 PF00872 Transposase, Mutator family ISU54_18325 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain ISU54_18325 PF02753 Pili assembly chaperone PapD, C-terminal domain ISU54_18330 PF00577 Outer membrane usher protein ISU54_18330 PF13954 PapC N-terminal domain ISU54_18330 PF13953 PapC C-terminal domain ISU54_18340 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain ISU54_18340 PF02753 Pili assembly chaperone PapD, C-terminal domain ISU54_18345 PF01320 Colicin immunity protein / pyocin immunity protein ISU54_18370 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain ISU54_18370 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain ISU54_18375 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ISU54_18375 PF03466 LysR substrate binding domain ISU54_18410 PF00585 C-terminal regulatory domain of Threonine dehydratase ISU54_18410 PF00291 Pyridoxal-phosphate dependent enzyme ISU54_18415 PF00920 Dehydratase family ISU54_18420 PF01063 Amino-transferase class IV ISU54_18430 PF00205 Thiamine pyrophosphate enzyme, central domain ISU54_18430 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain ISU54_18430 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain ISU54_18435 PF08046 IlvGEDA operon leader peptide ISU54_18440 PF01078 Magnesium chelatase, subunit ChlI ISU54_18440 PF13335 Magnesium chelatase, subunit ChlI C-terminal ISU54_18445 PF04219 Protein of unknown function, DUF ISU54_18450 PF03466 LysR substrate binding domain ISU54_18450 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ISU54_18455 PF02653 Branched-chain amino acid transport system / permease component ISU54_18460 PF02653 Branched-chain amino acid transport system / permease component ISU54_18465 PF00005 ABC transporter ISU54_18470 PF13407 Periplasmic binding protein domain ISU54_18505 PF01177 Asp/Glu/Hydantoin racemase ISU54_18510 PF00593 TonB dependent receptor ISU54_18510 PF07715 TonB-dependent Receptor Plug Domain ISU54_18515 PF05958 tRNA (Uracil-5-)-methyltransferase ISU54_18520 PF07226 Protein of unknown function (DUF1422) ISU54_18525 PF00440 Bacterial regulatory proteins, tetR family ISU54_18530 PF07992 Pyridine nucleotide-disulphide oxidoreductase ISU54_18530 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain ISU54_18535 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ISU54_18535 PF03466 LysR substrate binding domain ISU54_18540 PF00462 Glutaredoxin ISU54_18540 PF08534 Redoxin ISU54_18545 PF07992 Pyridine nucleotide-disulphide oxidoreductase ISU54_18545 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain ISU54_18550 PF03544 Gram-negative bacterial TonB protein C-terminal ISU54_18555 PF00529 HlyD membrane-fusion protein of T1SS ISU54_18560 PF00005 ABC transporter ISU54_18560 PF00664 ABC transporter transmembrane region ISU54_18570 PF00593 TonB dependent receptor ISU54_18570 PF07715 TonB-dependent Receptor Plug Domain ISU54_18575 PF14698 Argininosuccinate lyase C-terminal ISU54_18575 PF00206 Lyase ISU54_18580 PF00696 Amino acid kinase family ISU54_18585 PF02774 Semialdehyde dehydrogenase, dimerisation domain ISU54_18585 PF01118 Semialdehyde dehydrogenase, NAD binding domain ISU54_18590 PF01546 Peptidase family M20/M25/M40 ISU54_18590 PF07687 Peptidase dimerisation domain ISU54_18595 PF00311 Phosphoenolpyruvate carboxylase ISU54_18605 PF02219 Methylenetetrahydrofolate reductase ISU54_18610 PF03447 Homoserine dehydrogenase, NAD binding domain ISU54_18610 PF00742 Homoserine dehydrogenase ISU54_18610 PF00696 Amino acid kinase family ISU54_18620 PF01340 Met Apo-repressor, MetJ ISU54_18625 PF05360 yiaA/B two helix domain ISU54_18630 PF01197 Ribosomal protein L31 ISU54_18635 PF18319 PriA DNA helicase Cys-rich region (CRR) domain ISU54_18635 PF00271 Helicase conserved C-terminal domain ISU54_18635 PF00270 DEAD/DEAH box helicase ISU54_18635 PF17764 3′ DNA-binding domain (3′BD) ISU54_18635 PF18074 Primosomal protein N C-terminal domain ISU54_18640 PF00356 Bacterial regulatory proteins, lacI family ISU54_18645 PF05036 Sporulation related domain ISU54_18650 PF00227 Proteasome subunit ISU54_18655 PF07724 AAA domain (Cdc48 subfamily) ISU54_18655 PF00004 ATPase family associated with various cellular activities (AAA) ISU54_18655 PF10431 C-terminal, D2-small domain, of ClpB protein ISU54_18660 PF01040 UbiA prenyltransferase family ISU54_18665 PF03737 Aldolase/RraA ISU54_18680 PF00529 HlyD membrane-fusion protein of T1SS ISU54_18680 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion ISU54_18685 PF03412 Peptidase C39 family ISU54_18685 PF00664 ABC transporter transmembrane region ISU54_18685 PF00005 ABC transporter ISU54_18690 PF01695 IstB-like ATP binding protein ISU54_18695 PF00665 Integrase core domain ISU54_18695 PF02796 Helix-turn-helix domain of resolvase ISU54_18725 PF05936 Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE ISU54_18735 PF10431 C-terminal, D2-small domain, of ClpB protein ISU54_18735 PF00004 ATPase family associated with various cellular activities (AAA) ISU54_18735 PF17871 AAA lid domain ISU54_18735 PF07724 AAA domain (Cdc48 subfamily) ISU54_18770 PF04717 Type VI secretion system, phage-baseplate injector ISU54_18785 PF05593 RHS Repeat ISU54_18785 PF03527 RHS protein ISU54_18815 PF04717 Type VI secretion system, phage-baseplate injector ISU54_18825 PF05593 RHS Repeat ISU54_18825 PF03527 RHS protein ISU54_18845 PF01408 Oxidoreductase family, NAD-binding Rossmann fold ISU54_18845 PF02894 Oxidoreductase family, C-terminal alpha/beta domain ISU54_18850 PF02311 AraC-like ligand binding domain ISU54_18850 PF12833 Helix-turn-helix domain ISU54_18855 PF05025 RbsD / FucU transport protein family ISU54_18860 PF00294 pfkB family carbohydrate kinase ISU54_18865 PF01791 DeoC/LacD family aldolase ISU54_18870 PF03358 NADPH-dependent FMN reductase ISU54_18875 PF09084 NMT1/THI5 like ISU54_18880 PF00296 Luciferase-like monooxygenase ISU54_18885 PF00528 Binding-protein-dependent transport system inner membrane component ISU54_18890 PF00005 ABC transporter ISU54_18900 PF04221 RelB antitoxin ISU54_18905 PF00860 Permease family ISU54_18910 PF00999 Sodium/hydrogen exchanger family ISU54_18920 PF03279 Bacterial lipid A biosynthesis acyltransferase ISU54_18930 PF00005 ABC transporter ISU54_18935 PF02653 Branched-chain amino acid transport system / permease component ISU54_18945 PF00370 FGGY family of carbohydrate kinases, N-terminal domain ISU54_18945 PF02782 FGGY family of carbohydrate kinases, C-terminal domain ISU54_18950 PF00571 CBS domain ISU54_18950 PF01380 SIS domain ISU54_18955 PF02798 Glutathione S-transferase, N-terminal domain ISU54_18970 PF01797 Transposase IS200 like ISU54_18975 PF00313 'Cold-shock' DNA-binding domain ISU54_18980 PF00313 'Cold-shock' DNA-binding domain ISU54_18985 PF05433 Glycine zipper 2TM domain ISU54_18990 PF00753 Metallo-beta-lactamase superfamily ISU54_18995 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase ISU54_18995 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase ISU54_19000 PF02627 Carboxymuconolactone decarboxylase family ISU54_19005 PF07690 Major Facilitator Superfamily ISU54_19030 PF02954 Bacterial regulatory protein, Fis family ISU54_19035 PF01207 Dihydrouridine synthase (Dus) ISU54_19045 PF00474 Sodium:solute symporter family ISU54_19050 PF06196 Protein of unknown function (DUF997) ISU54_19060 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain ISU54_19060 PF00289 Biotin carboxylase, N-terminal domain ISU54_19060 PF02785 Biotin carboxylase C-terminal domain ISU54_19065 PF00364 Biotin-requiring enzyme ISU54_19070 PF01220 Dehydroquinase class II ISU54_19075 PF01794 Ferric reductase like transmembrane component ISU54_19080 PF00174 Oxidoreductase molybdopterin binding domain ISU54_19085 PF00107 Zinc-binding dehydrogenase ISU54_19085 PF08240 Alcohol dehydrogenase GroES-like domain ISU54_19090 PF17157 Gammaproteobacterial periplasmic sensor domain ISU54_19090 PF00990 Diguanylate cyclase, GGDEF domain ISU54_19090 PF00563 EAL domain ISU54_19100 PF04085 rod shape-determining protein MreC ISU54_19105 PF04093 rod shape-determining protein MreD ISU54_19110 PF02545 Maf-like protein ISU54_19115 PF10150 Ribonuclease E/G family ISU54_19115 PF00575 S1 RNA binding domain ISU54_19120 PF13116 Protein of unknown function ISU54_19120 PF13502 AsmA-like C-terminal region ISU54_19125 PF00795 Carbon-nitrogen hydrolase ISU54_19130 PF01523 Putative modulator of DNA gyrase ISU54_19135 PF18807 Tripartite Tc toxins repeat ISU54_19135 PF14431 YwqJ-like deaminase ISU54_19140 PF05785 Rho-activating domain of cytotoxic necrotizing factor ISU54_19140 PF18807 Tripartite Tc toxins repeat ISU54_19160 PF12256 Insecticide toxin TcdB middle/N-terminal region ISU54_19160 PF12255 Insecticide toxin TcdB middle/C-terminal region ISU54_19160 PF03534 Salmonella virulence plasmid 65kDa B protein ISU54_19165 PF18413 Neuraminidase-like domain ISU54_19165 PF18276 Tc toxin complex TcA C-terminal TcB-binding domain ISU54_19175 PF03466 LysR substrate binding domain ISU54_19175 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ISU54_19180 PF03466 LysR substrate binding domain ISU54_19180 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ISU54_19185 PF07869 Protein of unknown function (DUF1656) ISU54_19190 PF13533 Biotin-lipoyl like ISU54_19195 PF04632 Fusaric acid resistance protein family ISU54_19210 PF01337 Barstar (barnase inhibitor) ISU54_19215 PF04751 Protein of unknown function (DUF615) ISU54_19220 PF01523 Putative modulator of DNA gyrase ISU54_19230 PF07361 Cytochrome b562 ISU54_19235 PF14760 Rnk N-terminus ISU54_19235 PF01272 Transcription elongation factor, GreA/GreB, C-term ISU54_19240 PF00128 Alpha amylase, catalytic domain ISU54_19240 PF11941 Domain of unknown function (DUF3459) ISU54_19245 PF00367 phosphotransferase system, EIIB ISU54_19245 PF02378 Phosphotransferase system, EIIC ISU54_19250 PF00356 Bacterial regulatory proteins, lacI family ISU54_19260 PF01042 Endoribonuclease L-PSP ISU54_19265 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain ISU54_19265 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain ISU54_19270 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain ISU54_19270 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain ISU54_19275 PF00381 PTS HPr component phosphorylation site ISU54_19280 PF03668 P-loop ATPase protein family ISU54_19285 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 ISU54_19295 PF00309 Sigma-54 factor, Activator interacting domain (AID) ISU54_19295 PF04963 Sigma-54 factor, core binding domain ISU54_19295 PF04552 Sigma-54, DNA binding domain ISU54_19300 PF00005 ABC transporter ISU54_19300 PF12399 Branched-chain amino acid ATP-binding cassette transporter ISU54_19305 PF03968 OstA-like protein ISU54_19310 PF06835 Lipopolysaccharide-assembly, LptC-related ISU54_19320 PF01380 SIS domain ISU54_19320 PF00571 CBS domain ISU54_19325 PF01699 Sodium/calcium exchanger protein ISU54_19330 PF00005 ABC transporter ISU54_19335 PF02405 Permease MlaE ISU54_19340 PF02470 MlaD protein ISU54_19345 PF05494 MlaC protein ISU54_19350 PF13466 STAS domain ISU54_19355 PF01722 BolA-like protein ISU54_19360 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) ISU54_19365 PF13180 PDZ domain ISU54_19370 PF01797 Transposase IS200 like ISU54_19375 PF13180 PDZ domain ISU54_19375 PF00595 PDZ domain ISU54_19380 PF06295 Protein of unknown function (DUF1043) ISU54_19385 PF03969 AFG1-like ATPase ISU54_19390 PF00572 Ribosomal protein L13 ISU54_19395 PF00380 Ribosomal protein S9/S16 ISU54_19405 PF02798 Glutathione S-transferase, N-terminal domain ISU54_19405 PF00043 Glutathione S-transferase, C-terminal domain ISU54_19410 PF04386 Stringent starvation protein B ISU54_19420 PF07992 Pyridine nucleotide-disulphide oxidoreductase ISU54_19420 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster ISU54_19425 PF01493 GXGXG motif ISU54_19425 PF01645 Conserved region in glutamate synthase ISU54_19425 PF04898 Glutamate synthase central domain ISU54_19425 PF00310 Glutamine amidotransferases class-II ISU54_19430 PF16199 Radical_SAM C-terminal domain ISU54_19430 PF04055 Radical SAM superfamily ISU54_19435 PF00512 His Kinase A (phospho-acceptor) domain ISU54_19435 PF18415 Histidine kinase receptor ArcB trans-membrane domain ISU54_19435 PF00072 Response regulator receiver domain ISU54_19435 PF00989 PAS fold ISU54_19435 PF01627 Hpt domain ISU54_19435 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ISU54_19445 PF00912 Transglycosylase ISU54_19450 PF04972 BON domain ISU54_19455 PF13580 SIS domain ISU54_19460 PF02021 Uncharacterised protein family UPF0102 ISU54_19465 PF04348 LppC putative lipoprotein ISU54_19470 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases ISU54_19480 PF02678 Pirin ISU54_19480 PF17954 Quercetinase C-terminal cupin domain ISU54_19485 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ISU54_19485 PF03466 LysR substrate binding domain ISU54_19495 PF01695 IstB-like ATP binding protein ISU54_19500 PF00665 Integrase core domain ISU54_19500 PF02796 Helix-turn-helix domain of resolvase ISU54_19505 PF09500 Putative thioesterase (yiiD_Cterm) ISU54_19505 PF00583 Acetyltransferase (GNAT) family ISU54_19510 PF05170 AsmA family ISU54_19515 PF00860 Permease family ISU54_19520 PF03616 Sodium/glutamate symporter ISU54_19530 PF17191 RecG wedge domain ISU54_19530 PF00270 DEAD/DEAH box helicase ISU54_19530 PF00271 Helicase conserved C-terminal domain ISU54_19535 PF12105 SpoU, rRNA methylase, C-terminal ISU54_19535 PF00588 SpoU rRNA Methylase family ISU54_19540 PF13291 ACT domain ISU54_19540 PF04607 Region found in RelA / SpoT proteins ISU54_19540 PF02824 TGS domain ISU54_19545 PF01192 RNA polymerase Rpb6 ISU54_19550 PF00625 Guanylate kinase ISU54_19555 PF01653 NAD-dependent DNA ligase adenylation domain ISU54_19555 PF03120 NAD-dependent DNA ligase OB-fold domain ISU54_19560 PF03458 UPF0126 domain ISU54_19565 PF08340 Domain of unknown function (DUF1732) ISU54_19565 PF03755 YicC-like family, N-terminal region ISU54_19570 PF03725 3' exoribonuclease family, domain 2 ISU54_19570 PF01138 3' exoribonuclease family, domain 1 ISU54_19575 PF00156 Phosphoribosyl transferase domain ISU54_19580 PF00440 Bacterial regulatory proteins, tetR family ISU54_19585 PF00692 dUTPase ISU54_19590 PF04127 DNA / pantothenate metabolism flavoprotein ISU54_19590 PF02441 Flavoprotein ISU54_19595 PF04002 RadC-like JAB domain ISU54_19600 PF00830 Ribosomal L28 family ISU54_19605 PF00471 Ribosomal protein L33 ISU54_19610 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain ISU54_19610 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain ISU54_19610 PF06827 Zinc finger found in FPG and IleRS ISU54_19615 PF01467 Cytidylyltransferase-like ISU54_19620 PF00535 Glycosyl transferase family 2 ISU54_19625 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) ISU54_19630 PF01075 Glycosyltransferase family 9 (heptosyltransferase) ISU54_19635 PF01075 Glycosyltransferase family 9 (heptosyltransferase) ISU54_19640 PF01370 NAD dependent epimerase/dehydratase family ISU54_19645 PF00155 Aminotransferase class I and II ISU54_19650 PF08240 Alcohol dehydrogenase GroES-like domain ISU54_19650 PF00107 Zinc-binding dehydrogenase ISU54_19660 PF01551 Peptidase family M23 ISU54_19665 PF01676 Metalloenzyme superfamily ISU54_19665 PF06415 BPG-independent PGAM N-terminus (iPGM_N) ISU54_19670 PF00581 Rhodanese-like domain ISU54_19675 PF00462 Glutaredoxin ISU54_19680 PF02556 Preprotein translocase subunit SecB ISU54_19685 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus ISU54_19685 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus ISU54_19690 PF06426 Serine acetyltransferase, N-terminal ISU54_19690 PF00132 Bacterial transferase hexapeptide (six repeats) ISU54_19695 PF00588 SpoU rRNA Methylase family ISU54_19700 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain ISU54_19700 PF12833 Helix-turn-helix domain ISU54_19700 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain ISU54_19700 PF02805 Metal binding domain of Ada ISU54_19705 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ISU54_19705 PF00512 His Kinase A (phospho-acceptor) domain ISU54_19705 PF16527 Two-component sensor protein CpxA, periplasmic domain ISU54_19705 PF00672 HAMP domain ISU54_19710 PF00072 Response regulator receiver domain ISU54_19710 PF00486 Transcriptional regulatory protein, C terminal ISU54_19715 PF07813 LTXXQ motif family protein ISU54_19725 PF04754 Putative transposase, YhgA-like ISU54_19730 PF01545 Cation efflux family ISU54_19730 PF16916 Dimerisation domain of Zinc Transporter ISU54_19735 PF00365 Phosphofructokinase ISU54_19750 PF00939 Sodium:sulfate symporter transmembrane region ISU54_19755 PF03737 Aldolase/RraA ISU54_19760 PF02585 GlcNAc-PI de-N-acetylase ISU54_19765 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ISU54_19765 PF03466 LysR substrate binding domain ISU54_19770 PF00121 Triosephosphate isomerase ISU54_19775 PF07305 Protein of unknown function (DUF1454) ISU54_19780 PF05656 Protein of unknown function (DUF805) ISU54_19785 PF00175 Oxidoreductase NAD-binding domain ISU54_19785 PF00970 Oxidoreductase FAD-binding domain ISU54_19790 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded ISU54_19795 PF00370 FGGY family of carbohydrate kinases, N-terminal domain ISU54_19795 PF02782 FGGY family of carbohydrate kinases, C-terminal domain ISU54_19800 PF00230 Major intrinsic protein ISU54_19805 PF06005 Cell division protein ZapB ISU54_19810 PF01797 Transposase IS200 like ISU54_19815 PF02796 Helix-turn-helix domain of resolvase ISU54_19815 PF00665 Integrase core domain ISU54_19820 PF01695 IstB-like ATP binding protein ISU54_19830 PF02661 Fic/DOC family ISU54_19835 PF01381 Helix-turn-helix ISU54_19835 PF13521 AAA domain ISU54_19840 PF18073 Rubredoxin metal binding domain ISU54_19845 PF18429 Domain of unknown function (DUF5609) ISU54_19850 PF10144 Bacterial virulence factor haemolysin ISU54_19855 PF01048 Phosphorylase superfamily ISU54_19860 PF01676 Metalloenzyme superfamily ISU54_19870 PF01791 DeoC/LacD family aldolase ISU54_19875 PF07662 Na+ dependent nucleoside transporter C-terminus ISU54_19875 PF07670 Nucleoside recognition ISU54_19875 PF01773 Na+ dependent nucleoside transporter N-terminus ISU54_19880 PF01026 TatD related DNase ISU54_19885 PF01734 Patatin-like phospholipase ISU54_19890 PF07043 Protein of unknown function (DUF1328) ISU54_19895 PF04972 BON domain ISU54_19900 PF03144 Elongation factor Tu domain 2 ISU54_19900 PF00009 Elongation factor Tu GTP binding domain ISU54_19900 PF16658 Class II release factor RF3, C-terminal domain ISU54_19905 PF00583 Acetyltransferase (GNAT) family ISU54_19910 PF03603 DNA polymerase III psi subunit ISU54_19915 PF05175 Methyltransferase small domain ISU54_19915 PF08468 Methyltransferase small domain N-terminal ISU54_19925 PF07256 Protein of unknown function (DUF1435) ISU54_19930 PF00990 Diguanylate cyclase, GGDEF domain ISU54_19935 PF01095 Pectinesterase ISU54_19950 PF00873 AcrB/AcrD/AcrF family ISU54_19955 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion ISU54_19970 PF01075 Glycosyltransferase family 9 (heptosyltransferase) ISU54_19975 PF02782 FGGY family of carbohydrate kinases, C-terminal domain ISU54_19975 PF00370 FGGY family of carbohydrate kinases, N-terminal domain ISU54_19990 PF00005 ABC transporter ISU54_19995 PF02653 Branched-chain amino acid transport system / permease component ISU54_20000 PF02653 Branched-chain amino acid transport system / permease component ISU54_20005 PF13407 Periplasmic binding protein domain ISU54_20010 PF01791 DeoC/LacD family aldolase ISU54_20015 PF03992 Antibiotic biosynthesis monooxygenase ISU54_20020 PF10696 Protein of unknown function (DUF2501) ISU54_20025 PF02896 PEP-utilising enzyme, TIM barrel domain ISU54_20025 PF00381 PTS HPr component phosphorylation site ISU54_20025 PF00391 PEP-utilising enzyme, mobile domain ISU54_20025 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 ISU54_20025 PF05524 PEP-utilising enzyme, N-terminal ISU54_20035 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit ISU54_20040 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit ISU54_20045 PF12833 Helix-turn-helix domain ISU54_20055 PF05987 Bacterial protein of unknown function (DUF898) ISU54_20095 PF01555 DNA methylase ISU54_20110 PF07728 AAA domain (dynein-related subfamily) ISU54_20110 PF12102 Domain of unknown function (DUF3578) ISU54_20115 PF00665 Integrase core domain ISU54_20115 PF02796 Helix-turn-helix domain of resolvase ISU54_20120 PF01695 IstB-like ATP binding protein ISU54_20125 PF02580 D-Tyr-tRNA(Tyr) deacylase ISU54_20130 PF03631 Virulence factor BrkB ISU54_20135 PF13419 Haloacid dehalogenase-like hydrolase ISU54_20140 PF00679 Elongation factor G C-terminus ISU54_20140 PF03144 Elongation factor Tu domain 2 ISU54_20140 PF00009 Elongation factor Tu GTP binding domain ISU54_20145 PF00120 Glutamine synthetase, catalytic domain ISU54_20145 PF03951 Glutamine synthetase, beta-Grasp domain ISU54_20150 PF00989 PAS fold ISU54_20150 PF00512 His Kinase A (phospho-acceptor) domain ISU54_20150 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ISU54_20155 PF00158 Sigma-54 interaction domain ISU54_20155 PF00072 Response regulator receiver domain ISU54_20155 PF02954 Bacterial regulatory protein, Fis family ISU54_20160 PF04055 Radical SAM superfamily ISU54_20160 PF06969 HemN C-terminal domain ISU54_20165 PF04220 Der GTPase activator (YihI) ISU54_20170 PF01926 50S ribosome-binding GTPase ISU54_20175 PF01797 Transposase IS200 like ISU54_20180 PF01797 Transposase IS200 like ISU54_20185 PF01612 3'-5' exonuclease ISU54_20185 PF01367 5'-3' exonuclease, C-terminal SAM fold ISU54_20185 PF00476 DNA polymerase family A ISU54_20185 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain ISU54_20190 PF01323 DSBA-like thioredoxin domain ISU54_20195 PF01636 Phosphotransferase enzyme family ISU54_20200 PF06288 Protein of unknown function (DUF1040) ISU54_20205 PF12804 MobA-like NTP transferase domain ISU54_20210 PF03205 Molybdopterin guanine dinucleotide synthesis protein B ISU54_20215 PF00872 Transposase, Mutator family ISU54_20240 PF07729 FCD domain ISU54_20240 PF00392 Bacterial regulatory proteins, gntR family ISU54_20245 PF07690 Major Facilitator Superfamily ISU54_20260 PF00294 pfkB family carbohydrate kinase ISU54_20265 PF05025 RbsD / FucU transport protein family ISU54_20270 PF02705 K+ potassium transporter ISU54_20275 PF17868 AAA lid domain ISU54_20275 PF07728 AAA domain (dynein-related subfamily) ISU54_20275 PF12592 Protein of unknown function (DUF3763) ISU54_20280 PF05762 VWA domain containing CoxE-like protein ISU54_20285 PF03590 Aspartate-ammonia ligase ISU54_20290 PF01037 Lrp/AsnC ligand binding domain ISU54_20295 PF00258 Flavodoxin ISU54_20300 PF13932 GidA associated domain ISU54_20300 PF01134 Glucose inhibited division protein A ISU54_20305 PF02527 rRNA small subunit methyltransferase G ISU54_20310 PF03899 ATP synthase I chain ISU54_20315 PF00119 ATP synthase A chain ISU54_20320 PF00137 ATP synthase subunit C ISU54_20325 PF00430 ATP synthase B/B' CF(0) ISU54_20330 PF00213 ATP synthase delta (OSCP) subunit ISU54_20335 PF02874 ATP synthase alpha/beta family, beta-barrel domain ISU54_20335 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain ISU54_20335 PF00306 ATP synthase alpha/beta chain, C terminal domain ISU54_20340 PF00231 ATP synthase ISU54_20345 PF02874 ATP synthase alpha/beta family, beta-barrel domain ISU54_20345 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain ISU54_20350 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain ISU54_20350 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain ISU54_20355 PF12804 MobA-like NTP transferase domain ISU54_20355 PF00132 Bacterial transferase hexapeptide (six repeats) ISU54_20360 PF01380 SIS domain ISU54_20365 PF12849 PBP superfamily domain ISU54_20370 PF00528 Binding-protein-dependent transport system inner membrane component ISU54_20375 PF00528 Binding-protein-dependent transport system inner membrane component ISU54_20380 PF00005 ABC transporter ISU54_20385 PF01895 PhoU domain ISU54_20395 PF00497 Bacterial extracellular solute-binding proteins, family 3 ISU54_20400 PF00528 Binding-protein-dependent transport system inner membrane component ISU54_20405 PF00528 Binding-protein-dependent transport system inner membrane component ISU54_20410 PF13419 Haloacid dehalogenase-like hydrolase ISU54_20420 PF00860 Permease family ISU54_20440 PF07055 Enoyl reductase FAD binding domain ISU54_20440 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase ISU54_20440 PF12241 Trans-2-enoyl-CoA reductase catalytic region ISU54_20445 PF01926 50S ribosome-binding GTPase ISU54_20445 PF10396 GTP-binding protein TrmE N-terminus ISU54_20445 PF12631 MnmE helical domain ISU54_20450 PF14849 YidC periplasmic domain ISU54_20450 PF02096 60Kd inner membrane protein ISU54_20455 PF01809 Putative membrane protein insertion efficiency factor ISU54_20460 PF00825 Ribonuclease P ISU54_20465 PF00468 Ribosomal protein L34