locus-tag class description ISU55_00005 PF08299 Bacterial dnaA protein helix-turn-helix ISU55_00005 PF11638 DnaA N-terminal domain ISU55_00005 PF00308 Bacterial dnaA protein ISU55_00010 PF02768 DNA polymerase III beta subunit, C-terminal domain ISU55_00010 PF00712 DNA polymerase III beta subunit, N-terminal domain ISU55_00010 PF02767 DNA polymerase III beta subunit, central domain ISU55_00015 PF02463 RecF/RecN/SMC N terminal domain ISU55_00020 PF18053 DNA gyrase B subunit insert domain ISU55_00020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ISU55_00020 PF00986 DNA gyrase B subunit, carboxyl terminus ISU55_00020 PF01751 Toprim domain ISU55_00020 PF00204 DNA gyrase B ISU55_00035 PF02423 Ornithine cyclodeaminase/mu-crystallin family ISU55_00040 PF00291 Pyridoxal-phosphate dependent enzyme ISU55_00040 PF13291 ACT domain ISU55_00050 PF07119 Protein of unknown function (DUF1375) ISU55_00055 PF00011 Hsp20/alpha crystallin family ISU55_00060 PF00011 Hsp20/alpha crystallin family ISU55_00065 PF02080 TrkA-C domain ISU55_00065 PF06826 Predicted Permease Membrane Region ISU55_00070 PF00155 Aminotransferase class I and II ISU55_00080 PF00128 Alpha amylase, catalytic domain ISU55_00085 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ISU55_00085 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain ISU55_00095 PF13488 Glycine zipper ISU55_00095 PF00691 OmpA family ISU55_00105 PF03352 Methyladenine glycosylase ISU55_00110 PF02091 Glycyl-tRNA synthetase alpha subunit ISU55_00115 PF02092 Glycyl-tRNA synthetase beta subunit ISU55_00115 PF05746 DALR anticodon binding domain ISU55_00125 PF11254 Protein of unknown function (DUF3053) ISU55_00130 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 ISU55_00130 PF02378 Phosphotransferase system, EIIC ISU55_00130 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit ISU55_00135 PF08125 Mannitol dehydrogenase C-terminal domain ISU55_00135 PF01232 Mannitol dehydrogenase Rossmann domain ISU55_00140 PF05068 Mannitol repressor ISU55_00145 PF10928 Protein of unknown function (DUF2810) ISU55_00160 PF00672 HAMP domain ISU55_00160 PF02203 Tar ligand binding domain homologue ISU55_00160 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ISU55_00165 PF02777 Iron/manganese superoxide dismutases, C-terminal domain ISU55_00165 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain ISU55_00170 PF02634 FdhD/NarQ family ISU55_00180 PF09163 Formate dehydrogenase N, transmembrane ISU55_00180 PF13247 4Fe-4S dicluster domain ISU55_00185 PF01292 Prokaryotic cytochrome b561 ISU55_00190 PF04216 Protein involved in formate dehydrogenase formation ISU55_00195 PF12390 Selenocysteine synthase N terminal ISU55_00195 PF03841 L-seryl-tRNA selenium transferase ISU55_00200 PF00009 Elongation factor Tu GTP binding domain ISU55_00200 PF09107 Elongation factor SelB, winged helix ISU55_00200 PF09106 Elongation factor SelB, winged helix ISU55_00200 PF03144 Elongation factor Tu domain 2 ISU55_00230 PF07690 Major Facilitator Superfamily ISU55_00260 PF05936 Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE ISU55_00270 PF10431 C-terminal, D2-small domain, of ClpB protein ISU55_00270 PF00004 ATPase family associated with various cellular activities (AAA) ISU55_00270 PF07724 AAA domain (Cdc48 subfamily) ISU55_00270 PF17871 AAA lid domain ISU55_00305 PF04717 Type VI secretion system, phage-baseplate injector ISU55_00320 PF05593 RHS Repeat ISU55_00320 PF03527 RHS protein ISU55_00350 PF04717 Type VI secretion system, phage-baseplate injector ISU55_00360 PF03527 RHS protein ISU55_00360 PF05593 RHS Repeat ISU55_00380 PF02894 Oxidoreductase family, C-terminal alpha/beta domain ISU55_00380 PF01408 Oxidoreductase family, NAD-binding Rossmann fold ISU55_00385 PF12833 Helix-turn-helix domain ISU55_00385 PF02311 AraC-like ligand binding domain ISU55_00390 PF05025 RbsD / FucU transport protein family ISU55_00395 PF00294 pfkB family carbohydrate kinase ISU55_00400 PF01791 DeoC/LacD family aldolase ISU55_00405 PF03358 NADPH-dependent FMN reductase ISU55_00410 PF09084 NMT1/THI5 like ISU55_00415 PF00296 Luciferase-like monooxygenase ISU55_00420 PF00528 Binding-protein-dependent transport system inner membrane component ISU55_00425 PF00005 ABC transporter ISU55_00435 PF04221 RelB antitoxin ISU55_00440 PF00860 Permease family ISU55_00445 PF00999 Sodium/hydrogen exchanger family ISU55_00455 PF03279 Bacterial lipid A biosynthesis acyltransferase ISU55_00465 PF00005 ABC transporter ISU55_00470 PF02653 Branched-chain amino acid transport system / permease component ISU55_00480 PF00370 FGGY family of carbohydrate kinases, N-terminal domain ISU55_00480 PF02782 FGGY family of carbohydrate kinases, C-terminal domain ISU55_00485 PF01380 SIS domain ISU55_00485 PF00571 CBS domain ISU55_00490 PF02798 Glutathione S-transferase, N-terminal domain ISU55_00505 PF01797 Transposase IS200 like ISU55_00510 PF00313 'Cold-shock' DNA-binding domain ISU55_00515 PF00313 'Cold-shock' DNA-binding domain ISU55_00520 PF05433 Glycine zipper 2TM domain ISU55_00525 PF00753 Metallo-beta-lactamase superfamily ISU55_00530 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase ISU55_00530 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase ISU55_00535 PF02627 Carboxymuconolactone decarboxylase family ISU55_00540 PF07690 Major Facilitator Superfamily ISU55_00565 PF02954 Bacterial regulatory protein, Fis family ISU55_00570 PF01207 Dihydrouridine synthase (Dus) ISU55_00580 PF00474 Sodium:solute symporter family ISU55_00585 PF06196 Protein of unknown function (DUF997) ISU55_00595 PF00289 Biotin carboxylase, N-terminal domain ISU55_00595 PF02785 Biotin carboxylase C-terminal domain ISU55_00595 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain ISU55_00600 PF00364 Biotin-requiring enzyme ISU55_00605 PF01220 Dehydroquinase class II ISU55_00610 PF01794 Ferric reductase like transmembrane component ISU55_00615 PF00174 Oxidoreductase molybdopterin binding domain ISU55_00620 PF00107 Zinc-binding dehydrogenase ISU55_00620 PF08240 Alcohol dehydrogenase GroES-like domain ISU55_00625 PF00563 EAL domain ISU55_00625 PF17157 Gammaproteobacterial periplasmic sensor domain ISU55_00625 PF00990 Diguanylate cyclase, GGDEF domain ISU55_00635 PF04085 rod shape-determining protein MreC ISU55_00640 PF04093 rod shape-determining protein MreD ISU55_00645 PF02545 Maf-like protein ISU55_00650 PF00575 S1 RNA binding domain ISU55_00650 PF10150 Ribonuclease E/G family ISU55_00655 PF13116 Protein of unknown function ISU55_00655 PF13502 AsmA-like C-terminal region ISU55_00660 PF00795 Carbon-nitrogen hydrolase ISU55_00665 PF01523 Putative modulator of DNA gyrase ISU55_00670 PF14431 YwqJ-like deaminase ISU55_00670 PF18807 Tripartite Tc toxins repeat ISU55_00675 PF05785 Rho-activating domain of cytotoxic necrotizing factor ISU55_00675 PF18807 Tripartite Tc toxins repeat ISU55_00695 PF03534 Salmonella virulence plasmid 65kDa B protein ISU55_00695 PF12256 Insecticide toxin TcdB middle/N-terminal region ISU55_00695 PF12255 Insecticide toxin TcdB middle/C-terminal region ISU55_00700 PF01695 IstB-like ATP binding protein ISU55_00705 PF02796 Helix-turn-helix domain of resolvase ISU55_00705 PF00665 Integrase core domain ISU55_00710 PF18413 Neuraminidase-like domain ISU55_00710 PF18276 Tc toxin complex TcA C-terminal TcB-binding domain ISU55_00720 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ISU55_00720 PF03466 LysR substrate binding domain ISU55_00725 PF03466 LysR substrate binding domain ISU55_00725 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ISU55_00730 PF07869 Protein of unknown function (DUF1656) ISU55_00735 PF13533 Biotin-lipoyl like ISU55_00740 PF04632 Fusaric acid resistance protein family ISU55_00755 PF01337 Barstar (barnase inhibitor) ISU55_00760 PF04751 Protein of unknown function (DUF615) ISU55_00765 PF01523 Putative modulator of DNA gyrase ISU55_00775 PF07361 Cytochrome b562 ISU55_00780 PF01272 Transcription elongation factor, GreA/GreB, C-term ISU55_00780 PF14760 Rnk N-terminus ISU55_00785 PF00128 Alpha amylase, catalytic domain ISU55_00785 PF11941 Domain of unknown function (DUF3459) ISU55_00790 PF00367 phosphotransferase system, EIIB ISU55_00790 PF02378 Phosphotransferase system, EIIC ISU55_00795 PF00356 Bacterial regulatory proteins, lacI family ISU55_00805 PF01042 Endoribonuclease L-PSP ISU55_00810 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain ISU55_00810 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain ISU55_00815 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain ISU55_00815 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain ISU55_00820 PF00381 PTS HPr component phosphorylation site ISU55_00825 PF03668 P-loop ATPase protein family ISU55_00830 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 ISU55_00840 PF04552 Sigma-54, DNA binding domain ISU55_00840 PF04963 Sigma-54 factor, core binding domain ISU55_00840 PF00309 Sigma-54 factor, Activator interacting domain (AID) ISU55_00845 PF12399 Branched-chain amino acid ATP-binding cassette transporter ISU55_00845 PF00005 ABC transporter ISU55_00850 PF03968 OstA-like protein ISU55_00855 PF06835 Lipopolysaccharide-assembly, LptC-related ISU55_00865 PF01380 SIS domain ISU55_00865 PF00571 CBS domain ISU55_00870 PF01699 Sodium/calcium exchanger protein ISU55_00875 PF00005 ABC transporter ISU55_00880 PF02405 Permease MlaE ISU55_00885 PF02470 MlaD protein ISU55_00890 PF05494 MlaC protein ISU55_00895 PF13466 STAS domain ISU55_00900 PF01722 BolA-like protein ISU55_00905 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) ISU55_00910 PF13180 PDZ domain ISU55_00915 PF01797 Transposase IS200 like ISU55_00920 PF13180 PDZ domain ISU55_00920 PF00595 PDZ domain ISU55_00925 PF06295 Protein of unknown function (DUF1043) ISU55_00930 PF03969 AFG1-like ATPase ISU55_00935 PF00572 Ribosomal protein L13 ISU55_00940 PF00380 Ribosomal protein S9/S16 ISU55_00950 PF02798 Glutathione S-transferase, N-terminal domain ISU55_00950 PF00043 Glutathione S-transferase, C-terminal domain ISU55_00955 PF04386 Stringent starvation protein B ISU55_00965 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster ISU55_00965 PF07992 Pyridine nucleotide-disulphide oxidoreductase ISU55_00970 PF00310 Glutamine amidotransferases class-II ISU55_00970 PF04898 Glutamate synthase central domain ISU55_00970 PF01493 GXGXG motif ISU55_00970 PF01645 Conserved region in glutamate synthase ISU55_00975 PF16199 Radical_SAM C-terminal domain ISU55_00975 PF04055 Radical SAM superfamily ISU55_00980 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ISU55_00980 PF01627 Hpt domain ISU55_00980 PF00989 PAS fold ISU55_00980 PF00512 His Kinase A (phospho-acceptor) domain ISU55_00980 PF18415 Histidine kinase receptor ArcB trans-membrane domain ISU55_00980 PF00072 Response regulator receiver domain ISU55_00990 PF00912 Transglycosylase ISU55_00995 PF04972 BON domain ISU55_01000 PF13580 SIS domain ISU55_01005 PF02021 Uncharacterised protein family UPF0102 ISU55_01010 PF04348 LppC putative lipoprotein ISU55_01015 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases ISU55_01025 PF02678 Pirin ISU55_01025 PF17954 Quercetinase C-terminal cupin domain ISU55_01030 PF03466 LysR substrate binding domain ISU55_01030 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ISU55_01040 PF01695 IstB-like ATP binding protein ISU55_01045 PF02796 Helix-turn-helix domain of resolvase ISU55_01045 PF00665 Integrase core domain ISU55_01080 PF13407 Periplasmic binding protein domain ISU55_01085 PF00005 ABC transporter ISU55_01090 PF02653 Branched-chain amino acid transport system / permease component ISU55_01095 PF02653 Branched-chain amino acid transport system / permease component ISU55_01100 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ISU55_01100 PF03466 LysR substrate binding domain ISU55_01105 PF04219 Protein of unknown function, DUF ISU55_01110 PF13335 Magnesium chelatase, subunit ChlI C-terminal ISU55_01110 PF01078 Magnesium chelatase, subunit ChlI ISU55_01115 PF08046 IlvGEDA operon leader peptide ISU55_01120 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain ISU55_01120 PF00205 Thiamine pyrophosphate enzyme, central domain ISU55_01120 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain ISU55_01130 PF01063 Amino-transferase class IV ISU55_01135 PF00920 Dehydratase family ISU55_01140 PF00585 C-terminal regulatory domain of Threonine dehydratase ISU55_01140 PF00291 Pyridoxal-phosphate dependent enzyme ISU55_01175 PF03466 LysR substrate binding domain ISU55_01175 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ISU55_01180 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain ISU55_01180 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain ISU55_01205 PF01320 Colicin immunity protein / pyocin immunity protein ISU55_01210 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain ISU55_01210 PF02753 Pili assembly chaperone PapD, C-terminal domain ISU55_01220 PF13954 PapC N-terminal domain ISU55_01220 PF00577 Outer membrane usher protein ISU55_01220 PF13953 PapC C-terminal domain ISU55_01225 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain ISU55_01225 PF02753 Pili assembly chaperone PapD, C-terminal domain ISU55_01235 PF00872 Transposase, Mutator family ISU55_01255 PF13361 UvrD-like helicase C-terminal domain ISU55_01255 PF00580 UvrD/REP helicase N-terminal domain ISU55_01265 PF00271 Helicase conserved C-terminal domain ISU55_01265 PF00270 DEAD/DEAH box helicase ISU55_01270 PF00085 Thioredoxin ISU55_01275 PF07498 Rho termination factor, N-terminal domain ISU55_01275 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain ISU55_01275 PF07497 Rho termination factor, RNA-binding domain ISU55_01280 PF00953 Glycosyl transferase family 4 ISU55_01285 PF02706 Chain length determinant protein ISU55_01290 PF02350 UDP-N-acetylglucosamine 2-epimerase ISU55_01295 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain ISU55_01295 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain ISU55_01295 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain ISU55_01300 PF16363 GDP-mannose 4,6 dehydratase ISU55_01305 PF00483 Nucleotidyl transferase ISU55_01315 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family ISU55_01320 PF01943 Polysaccharide biosynthesis protein ISU55_01325 PF07429 4-alpha-L-fucosyltransferase glycosyl transferase group 56 ISU55_01330 PF06899 WzyE protein, O-antigen assembly polymerase ISU55_01335 PF03808 Glycosyl transferase WecB/TagA/CpsF family ISU55_01340 PF00324 Amino acid permease ISU55_01365 PF01797 Transposase IS200 like ISU55_01370 PF07219 HemY protein N-terminus ISU55_01370 PF07719 Tetratricopeptide repeat ISU55_01375 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase ISU55_01380 PF02602 Uroporphyrinogen-III synthase HemD ISU55_01385 PF03900 Porphobilinogen deaminase, C-terminal domain ISU55_01385 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain ISU55_01395 PF12633 Adenylate cyclase NT domain ISU55_01395 PF01295 Adenylate cyclase, class-I ISU55_01400 PF01491 Frataxin-like domain ISU55_01405 PF13627 Prokaryotic lipoprotein-attachment site ISU55_01410 PF01678 Diaminopimelate epimerase ISU55_01415 PF04340 Protein of unknown function, DUF484 ISU55_01420 PF02899 Phage integrase, N-terminal SAM-like domain ISU55_01420 PF00589 Phage integrase family ISU55_01425 PF13419 Haloacid dehalogenase-like hydrolase ISU55_01430 PF13361 UvrD-like helicase C-terminal domain ISU55_01430 PF00580 UvrD/REP helicase N-terminal domain ISU55_01445 PF09370 Phosphoenolpyruvate hydrolase-like ISU55_01450 PF01544 CorA-like Mg2+ transporter protein ISU55_01455 PF00892 EamA-like transporter family ISU55_01460 PF03061 Thioesterase superfamily ISU55_01465 PF02253 Phospholipase A1 ISU55_01470 PF00271 Helicase conserved C-terminal domain ISU55_01470 PF09382 RQC domain ISU55_01470 PF16124 RecQ zinc-binding ISU55_01470 PF00570 HRDC domain ISU55_01470 PF00270 DEAD/DEAH box helicase ISU55_01475 PF01810 LysE type translocator ISU55_01480 PF01810 LysE type translocator ISU55_01485 PF12146 Serine aminopeptidase, S33 ISU55_01500 PF03009 Glycerophosphoryl diester phosphodiesterase family ISU55_01505 PF01266 FAD dependent oxidoreductase ISU55_01505 PF04324 BFD-like [2Fe-2S] binding domain ISU55_01510 PF00890 FAD binding domain ISU55_01515 PF02754 Cysteine-rich domain ISU55_01515 PF13183 4Fe-4S dicluster domain ISU55_01520 PF08786 DcrB ISU55_01525 PF02592 Putative vitamin uptake transporter ISU55_01530 PF01206 Sulfurtransferase TusA ISU55_01535 PF00403 Heavy-metal-associated domain ISU55_01540 PF07947 YhhN family ISU55_01555 PF06611 Protein of unknown function (DUF1145) ISU55_01565 PF02881 SRP54-type protein, helical bundle domain ISU55_01565 PF00448 SRP54-type protein, GTPase domain ISU55_01565 PF00448 SRP54-type protein, GTPase domain ISU55_01565 PF02881 SRP54-type protein, helical bundle domain ISU55_01570 PF00005 ABC transporter ISU55_01575 PF02687 FtsX-like permease family ISU55_01575 PF18075 FtsX extracellular domain ISU55_01580 PF04542 Sigma-70 region 2 ISU55_01580 PF04545 Sigma-70, region 4 ISU55_01580 PF00140 Sigma-70 factor, region 1.2 ISU55_01585 PF01797 Transposase IS200 like ISU55_01590 PF12568 Acetyltransferase (GNAT) domain, PanZ ISU55_01595 PF13458 Periplasmic binding protein ISU55_01600 PF02653 Branched-chain amino acid transport system / permease component ISU55_01605 PF02653 Branched-chain amino acid transport system / permease component ISU55_01605 PF11862 Domain of unknown function (DUF3382) ISU55_01610 PF00005 ABC transporter ISU55_01610 PF12399 Branched-chain amino acid ATP-binding cassette transporter ISU55_01615 PF00005 ABC transporter ISU55_01655 PF13416 Bacterial extracellular solute-binding protein ISU55_01660 PF00528 Binding-protein-dependent transport system inner membrane component ISU55_01665 PF00528 Binding-protein-dependent transport system inner membrane component ISU55_01670 PF00005 ABC transporter ISU55_01670 PF17912 MalK OB fold domain ISU55_01675 PF03009 Glycerophosphoryl diester phosphodiesterase family ISU55_01680 PF03547 Membrane transport protein ISU55_01685 PF00892 EamA-like transporter family ISU55_01690 PF03466 LysR substrate binding domain ISU55_01690 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ISU55_01695 PF08267 Cobalamin-independent synthase, N-terminal domain ISU55_01695 PF01717 Cobalamin-independent synthase, Catalytic domain ISU55_01700 PF01738 Dienelactone hydrolase family ISU55_01705 PF01048 Phosphorylase superfamily ISU55_01715 PF02554 Carbon starvation protein CstA ISU55_01715 PF13722 5TM C-terminal transporter carbon starvation CstA ISU55_01720 PF09335 SNARE associated Golgi protein ISU55_01725 PF02646 RmuC family ISU55_01730 PF01209 ubiE/COQ5 methyltransferase family ISU55_01735 PF02036 SCP-2 sterol transfer family ISU55_01740 PF03109 ABC1 family ISU55_01745 PF02416 mttA/Hcf106 family ISU55_01755 PF00902 Sec-independent protein translocase protein (TatC) ISU55_01765 PF00665 Integrase core domain ISU55_01765 PF02796 Helix-turn-helix domain of resolvase ISU55_01770 PF01695 IstB-like ATP binding protein ISU55_01775 PF01026 TatD related DNase ISU55_01780 PF00490 Delta-aminolevulinic acid dehydratase ISU55_01785 PF02357 Transcription termination factor nusG ISU55_01790 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase ISU55_01795 PF00175 Oxidoreductase NAD-binding domain ISU55_01795 PF00970 Oxidoreductase FAD-binding domain ISU55_01800 PF00108 Thiolase, N-terminal domain ISU55_01800 PF02803 Thiolase, C-terminal domain ISU55_01805 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain ISU55_01805 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ISU55_01805 PF00378 Enoyl-CoA hydratase/isomerase ISU55_01810 PF00557 Metallopeptidase family M24 ISU55_01820 PF01797 Transposase IS200 like ISU55_01830 PF02386 Cation transport protein ISU55_01835 PF12724 Flavodoxin domain ISU55_01865 PF01565 FAD binding domain ISU55_01865 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain ISU55_01870 PF03099 Biotin/lipoate A/B protein ligase family ISU55_01870 PF08279 HTH domain ISU55_01870 PF02237 Biotin protein ligase C terminal domain ISU55_01875 PF00485 Phosphoribulokinase / Uridine kinase family ISU55_01880 PF13673 Acetyltransferase (GNAT) domain ISU55_01885 PF00665 Integrase core domain ISU55_01885 PF02796 Helix-turn-helix domain of resolvase ISU55_01890 PF01695 IstB-like ATP binding protein ISU55_01915 PF00009 Elongation factor Tu GTP binding domain ISU55_01915 PF03144 Elongation factor Tu domain 2 ISU55_01915 PF03143 Elongation factor Tu C-terminal domain ISU55_01920 PF00584 SecE/Sec61-gamma subunits of protein translocation complex ISU55_01925 PF00467 KOW motif ISU55_01925 PF02357 Transcription termination factor nusG ISU55_01930 PF00298 Ribosomal protein L11, RNA binding domain ISU55_01930 PF03946 Ribosomal protein L11, N-terminal domain ISU55_01935 PF00687 Ribosomal protein L1p/L10e family ISU55_01940 PF00466 Ribosomal protein L10 ISU55_01945 PF00542 Ribosomal protein L7/L12 C-terminal domain ISU55_01945 PF16320 Ribosomal protein L7/L12 dimerisation domain ISU55_01950 PF10385 RNA polymerase beta subunit external 1 domain ISU55_01950 PF04565 RNA polymerase Rpb2, domain 3 ISU55_01950 PF04561 RNA polymerase Rpb2, domain 2 ISU55_01950 PF04563 RNA polymerase beta subunit ISU55_01950 PF04560 RNA polymerase Rpb2, domain 7 ISU55_01950 PF00562 RNA polymerase Rpb2, domain 6 ISU55_01955 PF04998 RNA polymerase Rpb1, domain 5 ISU55_01955 PF05000 RNA polymerase Rpb1, domain 4 ISU55_01955 PF04997 RNA polymerase Rpb1, domain 1 ISU55_01955 PF04983 RNA polymerase Rpb1, domain 3 ISU55_01955 PF00623 RNA polymerase Rpb1, domain 2 ISU55_01960 PF01797 Transposase IS200 like ISU55_01965 PF04055 Radical SAM superfamily ISU55_01965 PF06968 Biotin and Thiamin Synthesis associated domain ISU55_01970 PF05690 Thiazole biosynthesis protein ThiG ISU55_01980 PF00899 ThiF family ISU55_01985 PF02581 Thiamine monophosphate synthase ISU55_01990 PF01964 Radical SAM ThiC family ISU55_01990 PF13667 ThiC-associated domain ISU55_01995 PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ ISU55_02000 PF09297 NADH pyrophosphatase zinc ribbon domain ISU55_02000 PF00293 NUDIX domain ISU55_02010 PF01208 Uroporphyrinogen decarboxylase (URO-D) ISU55_02015 PF04493 Endonuclease V ISU55_02020 PF04222 Protein of unknown function (DUF416) ISU55_02025 PF00216 Bacterial DNA-binding protein ISU55_02030 PF07356 Protein of unknown function (DUF1481) ISU55_02035 PF02843 Phosphoribosylglycinamide synthetase, C domain ISU55_02035 PF02844 Phosphoribosylglycinamide synthetase, N domain ISU55_02035 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain ISU55_02040 PF01808 AICARFT/IMPCHase bienzyme ISU55_02040 PF02142 MGS-like domain ISU55_02075 PF01695 IstB-like ATP binding protein ISU55_02080 PF00665 Integrase core domain ISU55_02080 PF02796 Helix-turn-helix domain of resolvase ISU55_02090 PF00474 Sodium:solute symporter family ISU55_02095 PF04341 Protein of unknown function, DUF485 ISU55_02100 PF00501 AMP-binding enzyme ISU55_02100 PF13193 AMP-binding enzyme C-terminal domain ISU55_02100 PF16177 Acetyl-coenzyme A synthetase N-terminus ISU55_02105 PF00375 Sodium:dicarboxylate symporter family ISU55_02110 PF00072 Response regulator receiver domain ISU55_02110 PF00196 Bacterial regulatory proteins, luxR family ISU55_02115 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ISU55_02115 PF00512 His Kinase A (phospho-acceptor) domain ISU55_02115 PF01627 Hpt domain ISU55_02115 PF00072 Response regulator receiver domain ISU55_02115 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) ISU55_02115 PF00672 HAMP domain ISU55_02120 PF00263 Bacterial type II and III secretion system protein ISU55_02120 PF03958 Bacterial type II/III secretion system short domain ISU55_02155 PF01514 Secretory protein of YscJ/FliF family ISU55_02170 PF00771 FHIPEP family ISU55_02175 PF18269 T3SS EscN ATPase C-terminal domain ISU55_02175 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain ISU55_02190 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term ISU55_02195 PF00813 FliP family ISU55_02200 PF01313 Bacterial export proteins, family 3 ISU55_02205 PF01311 Bacterial export proteins, family 1 ISU55_02210 PF01312 FlhB HrpN YscU SpaS Family ISU55_02215 PF04143 Sulphur transport ISU55_02220 PF01206 Sulfurtransferase TusA ISU55_02225 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ISU55_02225 PF03466 LysR substrate binding domain ISU55_02230 PF03222 Tryptophan/tyrosine permease family ISU55_02235 PF01053 Cys/Met metabolism PLP-dependent enzyme ISU55_02240 PF00005 ABC transporter ISU55_02245 PF01032 FecCD transport family ISU55_02250 PF01497 Periplasmic binding protein ISU55_02255 PF05171 Haemin-degrading HemS.ChuX domain ISU55_02260 PF07715 TonB-dependent Receptor Plug Domain ISU55_02260 PF00593 TonB dependent receptor ISU55_02270 PF13460 NAD(P)H-binding ISU55_02275 PF06228 Haem utilisation ChuX/HutX ISU55_02280 PF04055 Radical SAM superfamily ISU55_02300 PF11202 Phosphoribosyl transferase (PRTase) ISU55_02300 PF15608 PELOTA RNA binding domain ISU55_02320 PF02342 TerD domain ISU55_02325 PF02342 TerD domain ISU55_02330 PF05099 Tellurite resistance protein TerB ISU55_02335 PF03741 Integral membrane protein TerC family ISU55_02340 PF02342 TerD domain ISU55_02345 PF02342 TerD domain ISU55_02355 PF00577 Outer membrane usher protein ISU55_02355 PF13954 PapC N-terminal domain ISU55_02355 PF13953 PapC C-terminal domain ISU55_02360 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain ISU55_02375 PF01565 FAD binding domain ISU55_02375 PF08031 Berberine and berberine like ISU55_02385 PF04345 Chorismate lyase ISU55_02390 PF01040 UbiA prenyltransferase family ISU55_02395 PF01553 Acyltransferase ISU55_02400 PF01219 Prokaryotic diacylglycerol kinase ISU55_02405 PF01726 LexA DNA binding domain ISU55_02405 PF00717 Peptidase S24-like ISU55_02410 PF01475 Ferric uptake regulator family ISU55_02415 PF01207 Dihydrouridine synthase (Dus) ISU55_02420 PF09583 Phage shock protein G (Phageshock_PspG) ISU55_02425 PF08240 Alcohol dehydrogenase GroES-like domain ISU55_02425 PF00107 Zinc-binding dehydrogenase ISU55_02430 PF00772 DnaB-like helicase N terminal domain ISU55_02430 PF03796 DnaB-like helicase C terminal domain ISU55_02435 PF00842 Alanine racemase, C-terminal domain ISU55_02435 PF01168 Alanine racemase, N-terminal domain ISU55_02440 PF00155 Aminotransferase class I and II ISU55_02445 PF04237 YjbR ISU55_02450 PF17760 UvrA interaction domain ISU55_02450 PF17755 UvrA DNA-binding domain ISU55_02450 PF00005 ABC transporter ISU55_02455 PF00436 Single-strand binding protein family ISU55_02460 PF05336 L-rhamnose mutarotase ISU55_02465 PF00465 Iron-containing alcohol dehydrogenase ISU55_02470 PF00596 Class II Aldolase and Adducin N-terminal domain ISU55_02475 PF06134 L-rhamnose isomerase (RhaA) ISU55_02480 PF02782 FGGY family of carbohydrate kinases, C-terminal domain ISU55_02480 PF00370 FGGY family of carbohydrate kinases, N-terminal domain ISU55_02490 PF12833 Helix-turn-helix domain ISU55_02490 PF02311 AraC-like ligand binding domain ISU55_02495 PF12833 Helix-turn-helix domain ISU55_02495 PF02311 AraC-like ligand binding domain ISU55_02500 PF06379 L-rhamnose-proton symport protein (RhaT) ISU55_02530 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster ISU55_02530 PF13247 4Fe-4S dicluster domain ISU55_02530 PF07992 Pyridine nucleotide-disulphide oxidoreductase ISU55_02535 PF12800 4Fe-4S binding domain ISU55_02535 PF13247 4Fe-4S dicluster domain ISU55_02540 PF00384 Molybdopterin oxidoreductase ISU55_02540 PF04879 Molybdopterin oxidoreductase Fe4S4 domain ISU55_02540 PF01568 Molydopterin dinucleotide binding domain ISU55_02545 PF02683 Cytochrome C biogenesis protein transmembrane region ISU55_02545 PF11412 Disulphide bond corrector protein DsbC ISU55_02550 PF03091 CutA1 divalent ion tolerance protein ISU55_02555 PF03605 Anaerobic c4-dicarboxylate membrane transporter ISU55_02560 PF00206 Lyase ISU55_02560 PF10415 Fumarase C C-terminus ISU55_02565 PF04186 FxsA cytoplasmic membrane protein ISU55_02570 PF00166 Chaperonin 10 Kd subunit ISU55_02575 PF00118 TCP-1/cpn60 chaperonin family ISU55_02580 PF13698 Domain of unknown function (DUF4156) ISU55_02585 PF04055 Radical SAM superfamily ISU55_02590 PF09285 Elongation factor P, C-terminal ISU55_02590 PF08207 Elongation factor P (EF-P) KOW-like domain ISU55_02590 PF01132 Elongation factor P (EF-P) OB domain ISU55_02595 PF00893 Small Multidrug Resistance protein ISU55_02600 PF02313 Fumarate reductase subunit D ISU55_02605 PF02300 Fumarate reductase subunit C ISU55_02610 PF13183 4Fe-4S dicluster domain ISU55_02610 PF13085 2Fe-2S iron-sulfur cluster binding domain ISU55_02615 PF02910 Fumarate reductase flavoprotein C-term ISU55_02615 PF00890 FAD binding domain ISU55_02625 PF00152 tRNA synthetases class II (D, K and N) ISU55_02630 PF12795 Mechanosensitive ion channel porin domain ISU55_02630 PF00924 Mechanosensitive ion channel ISU55_02630 PF12794 Mechanosensitive ion channel inner membrane domain 1 ISU55_02635 PF02666 Phosphatidylserine decarboxylase ISU55_02640 PF03193 RsgA GTPase ISU55_02645 PF00929 Exonuclease ISU55_02660 PF08331 Domain of unknown function (DUF1730) ISU55_02665 PF01256 Carbohydrate kinase ISU55_02665 PF03853 YjeF-related protein N-terminus ISU55_02670 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE ISU55_02675 PF01520 N-acetylmuramoyl-L-alanine amidase ISU55_02680 PF01119 DNA mismatch repair protein, C-terminal domain ISU55_02680 PF08676 MutL C terminal dimerisation domain ISU55_02690 PF17209 Hfq protein ISU55_02695 PF16360 GTP-binding GTPase Middle Region ISU55_02695 PF13167 GTP-binding GTPase N-terminal ISU55_02695 PF01926 50S ribosome-binding GTPase ISU55_02700 PF01145 SPFH domain / Band 7 family ISU55_02700 PF12221 Bacterial membrane protein N terminal ISU55_02705 PF01145 SPFH domain / Band 7 family ISU55_02710 PF09838 Uncharacterized protein conserved in bacteria (DUF2065) ISU55_02715 PF00709 Adenylosuccinate synthetase ISU55_02720 PF02082 Transcriptional regulator ISU55_02725 PF17876 Cold shock domain ISU55_02725 PF08461 Ribonuclease R winged-helix domain ISU55_02725 PF08206 Ribonuclease B OB domain ISU55_02725 PF00773 RNB domain ISU55_02725 PF00575 S1 RNA binding domain ISU55_02730 PF08032 RNA 2'-O ribose methyltransferase substrate binding ISU55_02730 PF00588 SpoU rRNA Methylase family ISU55_02735 PF18158 Adaptive response protein AidB N-terminal domain ISU55_02735 PF00441 Acyl-CoA dehydrogenase, C-terminal domain ISU55_02735 PF02770 Acyl-CoA dehydrogenase, middle domain ISU55_02740 PF07338 Protein of unknown function (DUF1471) ISU55_02750 PF01695 IstB-like ATP binding protein ISU55_02755 PF00665 Integrase core domain ISU55_02755 PF02796 Helix-turn-helix domain of resolvase ISU55_02760 PF00326 Prolyl oligopeptidase family ISU55_02765 PF01250 Ribosomal protein S6 ISU55_02770 PF00436 Single-strand binding protein family ISU55_02775 PF01084 Ribosomal protein S18 ISU55_02780 PF03948 Ribosomal protein L9, C-terminal domain ISU55_02780 PF01281 Ribosomal protein L9, N-terminal domain ISU55_02785 PF01797 Transposase IS200 like ISU55_02795 PF04225 Opacity-associated protein A LysM-like domain ISU55_02795 PF08525 Opacity-associated protein A N-terminal motif ISU55_02800 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase ISU55_02800 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase ISU55_02805 PF01814 Hemerythrin HHE cation binding domain ISU55_02805 PF04405 Domain of Unknown function (DUF542) ISU55_02810 PF00149 Calcineurin-like phosphoesterase ISU55_02810 PF02872 5'-nucleotidase, C-terminal domain ISU55_02815 PF00459 Inositol monophosphatase family ISU55_02820 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) ISU55_02825 PF06526 Protein of unknown function (DUF1107) ISU55_02830 PF00571 CBS domain ISU55_02830 PF03471 Transporter associated domain ISU55_02830 PF01595 Cyclin M transmembrane N-terminal domain ISU55_02835 PF01625 Peptide methionine sulfoxide reductase ISU55_02840 PF07244 Surface antigen variable number repeat ISU55_02840 PF01103 Surface antigen ISU55_02840 PF17243 POTRA domain TamA domain 1 ISU55_02845 PF04357 TamB, inner membrane protein subunit of TAM complex ISU55_02850 PF06094 Gamma-glutamyl cyclotransferase, AIG2-like ISU55_02855 PF00719 Inorganic pyrophosphatase ISU55_02860 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain ISU55_02865 PF08245 Mur ligase middle domain ISU55_02865 PF02875 Mur ligase family, glutamate ligase domain ISU55_02865 PF01225 Mur ligase family, catalytic domain ISU55_02875 PF02863 Arginine repressor, C-terminal domain ISU55_02875 PF01316 Arginine repressor, DNA binding domain ISU55_02880 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain ISU55_02880 PF00056 lactate/malate dehydrogenase, NAD binding domain ISU55_02885 PF13693 Winged helix-turn-helix DNA-binding ISU55_02895 PF00348 Polyprenyl synthetase ISU55_02900 PF00829 Ribosomal prokaryotic L21 protein ISU55_02905 PF01016 Ribosomal L27 protein ISU55_02910 PF00892 EamA-like transporter family ISU55_02915 PF01018 GTP1/OBG ISU55_02915 PF01926 50S ribosome-binding GTPase ISU55_02920 PF00512 His Kinase A (phospho-acceptor) domain ISU55_02920 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ISU55_02920 PF00672 HAMP domain ISU55_02925 PF00072 Response regulator receiver domain ISU55_02925 PF00486 Transcriptional regulatory protein, C terminal ISU55_02930 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family ISU55_02935 PF01272 Transcription elongation factor, GreA/GreB, C-term ISU55_02935 PF03449 Transcription elongation factor, N-terminal ISU55_02940 PF01985 CRS1 / YhbY (CRM) domain ISU55_02945 PF01728 FtsJ-like methyltransferase ISU55_02950 PF17862 AAA+ lid domain ISU55_02950 PF06480 FtsH Extracellular ISU55_02950 PF00004 ATPase family associated with various cellular activities (AAA) ISU55_02950 PF01434 Peptidase family M41 ISU55_02955 PF00809 Pterin binding enzyme ISU55_02960 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain ISU55_02960 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III ISU55_02960 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II ISU55_02960 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I ISU55_02965 PF03840 Preprotein translocase SecG subunit ISU55_02980 PF17384 RimP C-terminal SH3 domain ISU55_02980 PF02576 RimP N-terminal domain ISU55_02985 PF13184 NusA-like KH domain ISU55_02985 PF08529 NusA N-terminal domain ISU55_02985 PF00575 S1 RNA binding domain ISU55_02990 PF04760 Translation initiation factor IF-2, N-terminal region ISU55_02990 PF08364 Bacterial translation initiation factor IF-2 associated region ISU55_02990 PF11987 Translation-initiation factor 2 ISU55_02990 PF03144 Elongation factor Tu domain 2 ISU55_02990 PF00009 Elongation factor Tu GTP binding domain ISU55_02995 PF02033 Ribosome-binding factor A ISU55_03000 PF01509 TruB family pseudouridylate synthase (N terminal domain) ISU55_03000 PF16198 tRNA pseudouridylate synthase B C-terminal domain ISU55_03000 PF09157 Pseudouridine synthase II TruB, C-terminal ISU55_03005 PF00312 Ribosomal protein S15 ISU55_03015 PF03725 3' exoribonuclease family, domain 2 ISU55_03015 PF00013 KH domain ISU55_03015 PF01138 3' exoribonuclease family, domain 1 ISU55_03015 PF00575 S1 RNA binding domain ISU55_03015 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain ISU55_03020 PF13181 Tetratricopeptide repeat ISU55_03020 PF07719 Tetratricopeptide repeat ISU55_03030 PF00271 Helicase conserved C-terminal domain ISU55_03030 PF12343 Cold shock protein DEAD box A ISU55_03030 PF00270 DEAD/DEAH box helicase ISU55_03030 PF03880 DbpA RNA binding domain ISU55_03040 PF01381 Helix-turn-helix ISU55_03050 PF00296 Luciferase-like monooxygenase ISU55_03055 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion ISU55_03055 PF00529 HlyD membrane-fusion protein of T1SS ISU55_03060 PF00873 AcrB/AcrD/AcrF family ISU55_03065 PF02321 Outer membrane efflux protein ISU55_03065 PF08139 Prokaryotic membrane lipoprotein lipid attachment site ISU55_03070 PF01136 Peptidase family U32 ISU55_03075 PF01136 Peptidase family U32 ISU55_03080 PF02036 SCP-2 sterol transfer family ISU55_03085 PF13508 Acetyltransferase (GNAT) domain ISU55_03090 PF01541 GIY-YIG catalytic domain ISU55_03105 PF13416 Bacterial extracellular solute-binding protein ISU55_03110 PF00528 Binding-protein-dependent transport system inner membrane component ISU55_03115 PF00528 Binding-protein-dependent transport system inner membrane component ISU55_03120 PF17912 MalK OB fold domain ISU55_03120 PF03459 TOBE domain ISU55_03120 PF00005 ABC transporter ISU55_03135 PF13460 NAD(P)H-binding ISU55_03140 PF12706 Beta-lactamase superfamily domain ISU55_03150 PF07969 Amidohydrolase family ISU55_03155 PF00005 ABC transporter ISU55_03160 PF00005 ABC transporter ISU55_03165 PF06007 Phosphonate metabolism protein PhnJ ISU55_03170 PF05861 Bacterial phosphonate metabolism protein (PhnI) ISU55_03175 PF05845 Bacterial phosphonate metabolism protein (PhnH) ISU55_03180 PF06754 Phosphonate metabolism protein PhnG ISU55_03185 PF07702 UTRA domain ISU55_03185 PF00392 Bacterial regulatory proteins, gntR family ISU55_03195 PF13597 Anaerobic ribonucleoside-triphosphate reductase ISU55_03195 PF03477 ATP cone domain ISU55_03200 PF00005 ABC transporter ISU55_03200 PF08352 Oligopeptide/dipeptide transporter, C-terminal region ISU55_03205 PF08352 Oligopeptide/dipeptide transporter, C-terminal region ISU55_03205 PF00005 ABC transporter ISU55_03210 PF12911 N-terminal TM domain of oligopeptide transport permease C ISU55_03210 PF00528 Binding-protein-dependent transport system inner membrane component ISU55_03215 PF00528 Binding-protein-dependent transport system inner membrane component ISU55_03225 PF04074 YhcH/YjgK/YiaL ISU55_03230 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain ISU55_03230 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain ISU55_03235 PF06877 Regulator of ribonuclease activity B ISU55_03240 PF00583 Acetyltransferase (GNAT) family ISU55_03245 PF10458 Valyl tRNA synthetase tRNA binding arm ISU55_03245 PF08264 Anticodon-binding domain of tRNA ISU55_03245 PF00133 tRNA synthetases class I (I, L, M and V) ISU55_03250 PF04364 DNA polymerase III chi subunit, HolC ISU55_03255 PF00883 Cytosol aminopeptidase family, catalytic domain ISU55_03255 PF02789 Cytosol aminopeptidase family, N-terminal domain ISU55_03260 PF03739 Lipopolysaccharide export system permease LptF/LptG ISU55_03265 PF03739 Lipopolysaccharide export system permease LptF/LptG ISU55_03275 PF13356 Arm DNA-binding domain ISU55_03275 PF00589 Phage integrase family ISU55_03285 PF01119 DNA mismatch repair protein, C-terminal domain ISU55_03285 PF08676 MutL C terminal dimerisation domain ISU55_03290 PF01695 IstB-like ATP binding protein ISU55_03295 PF02796 Helix-turn-helix domain of resolvase ISU55_03295 PF00665 Integrase core domain ISU55_03300 PF01797 Transposase IS200 like ISU55_03305 PF03884 DNA gyrase inhibitor YacG ISU55_03310 PF07072 Cell division protein ISU55_03315 PF01121 Dephospho-CoA kinase ISU55_03320 PF00478 IMP dehydrogenase / GMP reductase domain ISU55_03325 PF00482 Type II secretion system (T2SS), protein F ISU55_03330 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain ISU55_03330 PF00437 Type II/IV secretion system protein ISU55_03335 PF07963 Prokaryotic N-terminal methylation motif ISU55_03340 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain ISU55_03340 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain ISU55_03345 PF01510 N-acetylmuramoyl-L-alanine amidase ISU55_03350 PF17113 Regulatory signalling modulator protein AmpE ISU55_03355 PF00324 Amino acid permease ISU55_03360 PF00392 Bacterial regulatory proteins, gntR family ISU55_03360 PF07729 FCD domain ISU55_03365 PF17831 Pyruvate dehydrogenase E1 component middle domain ISU55_03365 PF00456 Transketolase, thiamine diphosphate binding domain ISU55_03370 PF00364 Biotin-requiring enzyme ISU55_03370 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) ISU55_03370 PF02817 e3 binding domain ISU55_03375 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain ISU55_03375 PF07992 Pyridine nucleotide-disulphide oxidoreductase ISU55_03380 PF01797 Transposase IS200 like ISU55_03385 PF06434 Aconitate hydratase 2 N-terminus ISU55_03385 PF00330 Aconitase family (aconitate hydratase) ISU55_03385 PF11791 Aconitate B N-terminal domain ISU55_03390 PF06062 Uncharacterised protein family (UPF0231) ISU55_03395 PF00892 EamA-like transporter family ISU55_03400 PF02675 S-adenosylmethionine decarboxylase ISU55_03405 PF17284 Spermidine synthase tetramerisation domain ISU55_03410 PF09691 Type II secretion system pilotin lipoprotein (PulS_OutS) ISU55_03415 PF10518 TAT (twin-arginine translocation) pathway signal sequence ISU55_03415 PF07732 Multicopper oxidase ISU55_03415 PF07731 Multicopper oxidase ISU55_03415 PF00394 Multicopper oxidase ISU55_03420 PF00156 Phosphoribosyl transferase domain ISU55_03425 PF00484 Carbonic anhydrase ISU55_03430 PF00005 ABC transporter ISU55_03435 PF01061 ABC-2 type transporter ISU55_03445 PF02261 Aspartate decarboxylase ISU55_03450 PF02569 Pantoate-beta-alanine ligase ISU55_03455 PF02548 Ketopantoate hydroxymethyltransferase ISU55_03460 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) ISU55_03465 PF01743 Poly A polymerase head domain ISU55_03465 PF12627 Probable RNA and SrmB- binding site of polymerase A ISU55_03465 PF12626 Polymerase A arginine-rich C-terminus ISU55_03470 PF00749 tRNA synthetases class I (E and Q), catalytic domain ISU55_03475 PF01258 Prokaryotic dksA/traR C4-type zinc finger ISU55_03480 PF03749 Sugar fermentation stimulation protein RE domain ISU55_03480 PF17746 SfsA N-terminal OB domain ISU55_03485 PF02834 LigT like Phosphoesterase ISU55_03490 PF08482 ATP-dependent helicase C-terminal ISU55_03490 PF04408 Helicase associated domain (HA2) ISU55_03490 PF00271 Helicase conserved C-terminal domain ISU55_03490 PF00270 DEAD/DEAH box helicase ISU55_03495 PF14812 Transmembrane domain of transglycosylase PBP1 at N-terminal ISU55_03495 PF00912 Transglycosylase ISU55_03495 PF00905 Penicillin binding protein transpeptidase domain ISU55_03495 PF14814 Bifunctional transglycosylase second domain ISU55_03500 PF00005 ABC transporter ISU55_03505 PF01497 Periplasmic binding protein ISU55_03510 PF01032 FecCD transport family ISU55_03515 PF00202 Aminotransferase class-III ISU55_03520 PF00654 Voltage gated chloride channel ISU55_03525 PF01521 Iron-sulphur cluster biosynthesis ISU55_03530 PF03458 UPF0126 domain ISU55_03535 PF01497 Periplasmic binding protein ISU55_03540 PF01048 Phosphorylase superfamily ISU55_03545 PF01966 HD domain ISU55_03545 PF13286 Phosphohydrolase-associated domain ISU55_03550 PF00595 PDZ domain ISU55_03555 PF01627 Hpt domain ISU55_03555 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) ISU55_03555 PF00512 His Kinase A (phospho-acceptor) domain ISU55_03555 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ISU55_03555 PF00672 HAMP domain ISU55_03555 PF00072 Response regulator receiver domain ISU55_03565 PF01938 TRAM domain ISU55_03565 PF05958 tRNA (Uracil-5-)-methyltransferase ISU55_03570 PF13291 ACT domain ISU55_03570 PF04607 Region found in RelA / SpoT proteins ISU55_03570 PF02824 TGS domain ISU55_03575 PF03819 MazG nucleotide pyrophosphohydrolase domain ISU55_03580 PF00117 Glutamine amidotransferase class-I ISU55_03580 PF06418 CTP synthase N-terminus ISU55_03585 PF03952 Enolase, N-terminal domain ISU55_03585 PF00113 Enolase, C-terminal TIM barrel domain ISU55_03590 PF00080 Copper/zinc superoxide dismutase (SODC) ISU55_03595 PF04055 Radical SAM superfamily ISU55_03600 PF01242 6-pyruvoyl tetrahydropterin synthase ISU55_03605 PF00258 Flavodoxin ISU55_03605 PF00667 FAD binding domain ISU55_03605 PF00175 Oxidoreductase NAD-binding domain ISU55_03610 PF01077 Nitrite and sulphite reductase 4Fe-4S domain ISU55_03610 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain ISU55_03640 PF10414 Sirohaem synthase dimerisation region ISU55_03640 PF14824 Sirohaem biosynthesis protein central ISU55_03640 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases ISU55_03645 PF01507 Phosphoadenosine phosphosulfate reductase family ISU55_03650 PF00009 Elongation factor Tu GTP binding domain ISU55_03660 PF12084 Protein of unknown function (DUF3561) ISU55_03665 PF04977 Septum formation initiator ISU55_03670 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase ISU55_03675 PF02542 YgbB family ISU55_03680 PF01142 tRNA pseudouridine synthase D (TruD) ISU55_03685 PF01975 Survival protein SurE ISU55_03695 PF01476 LysM domain ISU55_03695 PF01551 Peptidase family M23 ISU55_03700 PF04545 Sigma-70, region 4 ISU55_03700 PF04539 Sigma-70 region 3 ISU55_03700 PF04542 Sigma-70 region 2 ISU55_03700 PF00140 Sigma-70 factor, region 1.2 ISU55_03705 PF05188 MutS domain II ISU55_03705 PF05192 MutS domain III ISU55_03705 PF05190 MutS family domain IV ISU55_03705 PF00488 MutS domain V ISU55_03705 PF01624 MutS domain I ISU55_03710 PF02502 Ribose/Galactose Isomerase ISU55_03715 PF00107 Zinc-binding dehydrogenase ISU55_03715 PF08240 Alcohol dehydrogenase GroES-like domain ISU55_03725 PF02733 Dak1 domain ISU55_03730 PF02734 DAK2 domain ISU55_03735 PF13936 Helix-turn-helix domain ISU55_03735 PF04198 Putative sugar-binding domain ISU55_03740 PF02040 Arsenical pump membrane protein ISU55_03745 PF01022 Bacterial regulatory protein, arsR family ISU55_03760 PF00497 Bacterial extracellular solute-binding proteins, family 3 ISU55_03765 PF14376 Haem-binding domain ISU55_03765 PF03150 Di-haem cytochrome c peroxidase ISU55_03765 PF00034 Cytochrome c ISU55_03775 PF07715 TonB-dependent Receptor Plug Domain ISU55_03775 PF00593 TonB dependent receptor ISU55_03785 PF00557 Metallopeptidase family M24 ISU55_03795 PF05683 Fumarase C-terminus ISU55_03795 PF05681 Fumarate hydratase (Fumerase) ISU55_03800 PF00370 FGGY family of carbohydrate kinases, N-terminal domain ISU55_03800 PF02782 FGGY family of carbohydrate kinases, C-terminal domain ISU55_03805 PF01261 Xylose isomerase-like TIM barrel ISU55_03810 PF02653 Branched-chain amino acid transport system / permease component ISU55_03815 PF02653 Branched-chain amino acid transport system / permease component ISU55_03820 PF00005 ABC transporter ISU55_03825 PF01797 Transposase IS200 like ISU55_03830 PF00800 Prephenate dehydratase ISU55_03830 PF01817 Chorismate mutase type II ISU55_03835 PF01817 Chorismate mutase type II ISU55_03835 PF02153 Prephenate dehydrogenase ISU55_03840 PF00793 DAHP synthetase I family ISU55_03845 PF00072 Response regulator receiver domain ISU55_03845 PF04397 LytTr DNA-binding domain ISU55_03855 PF04338 Protein of unknown function, DUF481 ISU55_03865 PF00665 Integrase core domain ISU55_03865 PF02796 Helix-turn-helix domain of resolvase ISU55_03870 PF01695 IstB-like ATP binding protein ISU55_03880 PF01245 Ribosomal protein L19 ISU55_03885 PF01746 tRNA (Guanine-1)-methyltransferase ISU55_03890 PF05239 PRC-barrel domain ISU55_03890 PF01782 RimM N-terminal domain ISU55_03895 PF00886 Ribosomal protein S16 ISU55_03900 PF02978 Signal peptide binding domain ISU55_03900 PF02881 SRP54-type protein, helical bundle domain ISU55_03900 PF00448 SRP54-type protein, GTPase domain ISU55_03905 PF01578 Cytochrome C assembly protein ISU55_03910 PF01595 Cyclin M transmembrane N-terminal domain ISU55_03910 PF03471 Transporter associated domain ISU55_03910 PF00571 CBS domain ISU55_03915 PF01797 Transposase IS200 like ISU55_03920 PF02664 S-Ribosylhomocysteinase (LuxS) ISU55_03925 PF04262 Glutamate-cysteine ligase ISU55_03930 PF09335 SNARE associated Golgi protein ISU55_03935 PF13419 Haloacid dehalogenase-like hydrolase ISU55_03965 PF02599 Global regulator protein family ISU55_03970 PF02272 DHHA1 domain ISU55_03970 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain ISU55_03970 PF01411 tRNA synthetases class II (A) ISU55_03975 PF02631 RecX family ISU55_03980 PF00154 recA bacterial DNA recombination protein ISU55_03985 PF02464 Competence-damaged protein ISU55_03990 PF07690 Major Facilitator Superfamily ISU55_04005 PF00370 FGGY family of carbohydrate kinases, N-terminal domain ISU55_04005 PF02782 FGGY family of carbohydrate kinases, C-terminal domain ISU55_04010 PF02780 Transketolase, C-terminal domain ISU55_04010 PF02779 Transketolase, pyrimidine binding domain ISU55_04015 PF00456 Transketolase, thiamine diphosphate binding domain ISU55_04020 PF02653 Branched-chain amino acid transport system / permease component ISU55_04025 PF00005 ABC transporter ISU55_04035 PF13407 Periplasmic binding protein domain ISU55_04040 PF00141 Peroxidase ISU55_04045 PF07361 Cytochrome b562 ISU55_04050 PF01292 Prokaryotic cytochrome b561 ISU55_04055 PF02613 Nitrate reductase delta subunit ISU55_04060 PF04976 DMSO reductase anchor subunit (DmsC) ISU55_04065 PF12800 4Fe-4S binding domain ISU55_04065 PF13247 4Fe-4S dicluster domain ISU55_04070 PF04879 Molybdopterin oxidoreductase Fe4S4 domain ISU55_04070 PF00384 Molybdopterin oxidoreductase ISU55_04070 PF01568 Molydopterin dinucleotide binding domain ISU55_04075 PF00596 Class II Aldolase and Adducin N-terminal domain ISU55_04080 PF00455 DeoR C terminal sensor domain ISU55_04080 PF08220 DeoR-like helix-turn-helix domain ISU55_04090 PF01797 Transposase IS200 like ISU55_04095 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein ISU55_04100 PF13525 Outer membrane lipoprotein ISU55_04105 PF01479 S4 domain ISU55_04105 PF00849 RNA pseudouridylate synthase ISU55_04110 PF02578 Multi-copper polyphenol oxidoreductase laccase ISU55_04115 PF17871 AAA lid domain ISU55_04115 PF02861 Clp amino terminal domain, pathogenicity island component ISU55_04115 PF07724 AAA domain (Cdc48 subfamily) ISU55_04115 PF00004 ATPase family associated with various cellular activities (AAA) ISU55_04115 PF10431 C-terminal, D2-small domain, of ClpB protein ISU55_04145 PF10043 Predicted periplasmic lipoprotein (DUF2279) ISU55_04150 PF13091 PLD-like domain ISU55_04155 PF13607 Succinyl-CoA ligase like flavodoxin domain ISU55_04155 PF13380 CoA binding domain ISU55_04155 PF00583 Acetyltransferase (GNAT) family ISU55_04160 PF03942 DTW domain ISU55_04165 PF00085 Thioredoxin ISU55_04170 PF00588 SpoU rRNA Methylase family ISU55_04170 PF08032 RNA 2'-O ribose methyltransferase substrate binding ISU55_04175 PF07690 Major Facilitator Superfamily ISU55_04180 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion ISU55_04180 PF00529 HlyD membrane-fusion protein of T1SS ISU55_04185 PF01047 MarR family ISU55_04190 PF05437 Branched-chain amino acid transport protein (AzlD) ISU55_04195 PF03591 AzlC protein ISU55_04200 PF07690 Major Facilitator Superfamily ISU55_04210 PF01425 Amidase ISU55_04225 PF00497 Bacterial extracellular solute-binding proteins, family 3 ISU55_04230 PF00528 Binding-protein-dependent transport system inner membrane component ISU55_04235 PF00528 Binding-protein-dependent transport system inner membrane component ISU55_04240 PF00005 ABC transporter ISU55_04245 PF00266 Aminotransferase class-V ISU55_04250 PF01695 IstB-like ATP binding protein ISU55_04255 PF02796 Helix-turn-helix domain of resolvase ISU55_04255 PF00665 Integrase core domain ISU55_04260 PF00266 Aminotransferase class-V ISU55_04265 PF07687 Peptidase dimerisation domain ISU55_04265 PF01546 Peptidase family M20/M25/M40 ISU55_04275 PF08479 POTRA domain, ShlB-type ISU55_04275 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB ISU55_04285 PF18254 HMW1 domain 2 ISU55_04285 PF18071 HMW1C N-terminal ISU55_04295 PF09317 Domain of unknown function (DUF1974) ISU55_04295 PF02771 Acyl-CoA dehydrogenase, N-terminal domain ISU55_04295 PF00441 Acyl-CoA dehydrogenase, C-terminal domain ISU55_04300 PF13580 SIS domain ISU55_04305 PF13230 Glutamine amidotransferases class-II ISU55_04310 PF03734 L,D-transpeptidase catalytic domain ISU55_04315 PF05896 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) ISU55_04315 PF11973 NQRA C-terminal domain ISU55_04320 PF03116 NQR2, RnfD, RnfE family ISU55_04325 PF04205 FMN-binding domain ISU55_04330 PF02508 Rnf-Nqr subunit, membrane protein ISU55_04335 PF02508 Rnf-Nqr subunit, membrane protein ISU55_04340 PF00970 Oxidoreductase FAD-binding domain ISU55_04340 PF00111 2Fe-2S iron-sulfur cluster binding domain ISU55_04340 PF00175 Oxidoreductase NAD-binding domain ISU55_04345 PF02424 ApbE family ISU55_04355 PF03009 Glycerophosphoryl diester phosphodiesterase family ISU55_04360 PF00817 impB/mucB/samB family ISU55_04360 PF11799 impB/mucB/samB family C-terminal domain ISU55_04360 PF11798 IMS family HHH motif ISU55_04365 PF07687 Peptidase dimerisation domain ISU55_04365 PF01546 Peptidase family M20/M25/M40 ISU55_04370 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ISU55_04370 PF03466 LysR substrate binding domain ISU55_04385 PF00156 Phosphoribosyl transferase domain ISU55_04390 PF06500 Alpha/beta hydrolase of unknown function (DUF1100) ISU55_04395 PF07417 Sigma factor-binding transcriptional regulator Crl ISU55_04400 PF00696 Amino acid kinase family ISU55_04400 PF01472 PUA domain ISU55_04405 PF01695 IstB-like ATP binding protein ISU55_04410 PF00665 Integrase core domain ISU55_04410 PF02796 Helix-turn-helix domain of resolvase ISU55_04415 PF00171 Aldehyde dehydrogenase family ISU55_04420 PF07317 Flagellar regulator YcgR ISU55_04420 PF07238 PilZ domain ISU55_04430 PF08241 Methyltransferase domain ISU55_04440 PF01202 Shikimate kinase ISU55_04445 PF06865 Pyrimidine/purine nucleoside phosphorylase ISU55_04450 PF04381 Putative exonuclease, RdgC ISU55_04455 PF00480 ROK family ISU55_04460 PF13476 AAA domain ISU55_04465 PF12320 Type 5 capsule protein repressor C-terminal domain ISU55_04465 PF00149 Calcineurin-like phosphoesterase ISU55_04470 PF00486 Transcriptional regulatory protein, C terminal ISU55_04470 PF00072 Response regulator receiver domain ISU55_04475 PF00989 PAS fold ISU55_04475 PF00512 His Kinase A (phospho-acceptor) domain ISU55_04475 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ISU55_04475 PF11808 Phosphate regulon sensor protein PhoR ISU55_04480 PF12849 PBP superfamily domain ISU55_04485 PF05525 Branched-chain amino acid transport protein ISU55_04490 PF00324 Amino acid permease ISU55_04495 PF00128 Alpha amylase, catalytic domain ISU55_04495 PF02903 Alpha amylase, N-terminal ig-like domain ISU55_04515 PF10417 C-terminal domain of 1-Cys peroxiredoxin ISU55_04515 PF00578 AhpC/TSA family ISU55_04520 PF04336 Acyl carrier protein phosphodiesterase ISU55_04525 PF02547 Queuosine biosynthesis protein ISU55_04530 PF01702 Queuine tRNA-ribosyltransferase ISU55_04535 PF02699 Preprotein translocase subunit ISU55_04540 PF02355 Protein export membrane protein ISU55_04540 PF13721 SecD export protein N-terminal TM region ISU55_04540 PF07549 SecD/SecF GG Motif ISU55_04545 PF02355 Protein export membrane protein ISU55_04545 PF07549 SecD/SecF GG Motif ISU55_04550 PF01797 Transposase IS200 like ISU55_04565 PF03477 ATP cone domain ISU55_04570 PF01872 RibD C-terminal domain ISU55_04570 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region ISU55_04575 PF00885 6,7-dimethyl-8-ribityllumazine synthase ISU55_04580 PF01029 NusB family ISU55_04585 PF02769 AIR synthase related protein, C-terminal domain ISU55_04585 PF00586 AIR synthase related protein, N-terminal domain ISU55_04590 PF04608 Phosphatidylglycerophosphatase A ISU55_04595 PF01797 Transposase IS200 like ISU55_04600 PF13292 1-deoxy-D-xylulose-5-phosphate synthase ISU55_04600 PF02779 Transketolase, pyrimidine binding domain ISU55_04600 PF02780 Transketolase, C-terminal domain ISU55_04605 PF00348 Polyprenyl synthetase ISU55_04610 PF02609 Exonuclease VII small subunit ISU55_04615 PF02926 THUMP domain ISU55_04615 PF02568 Thiamine biosynthesis protein (ThiI) ISU55_04620 PF01965 DJ-1/PfpI family ISU55_04625 PF08546 Ketopantoate reductase PanE/ApbA C terminal ISU55_04625 PF02558 Ketopantoate reductase PanE/ApbA ISU55_04630 PF04461 Protein of unknown function (DUF520) ISU55_04635 PF07690 Major Facilitator Superfamily ISU55_04640 PF01040 UbiA prenyltransferase family ISU55_04645 PF03626 Prokaryotic Cytochrome C oxidase subunit IV ISU55_04650 PF00510 Cytochrome c oxidase subunit III ISU55_04655 PF00115 Cytochrome C and Quinol oxidase polypeptide I ISU55_04660 PF00116 Cytochrome C oxidase subunit II, periplasmic domain ISU55_04660 PF06481 COX Aromatic Rich Motif ISU55_04665 PF03502 Nucleoside-specific channel-forming protein, Tsx ISU55_04670 PF07690 Major Facilitator Superfamily ISU55_04675 PF08139 Prokaryotic membrane lipoprotein lipid attachment site ISU55_04675 PF03923 Uncharacterized lipoprotein ISU55_04680 PF01722 BolA-like protein ISU55_04685 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase ISU55_04685 PF05698 Bacterial trigger factor protein (TF) C-terminus ISU55_04685 PF05697 Bacterial trigger factor protein (TF) ISU55_04690 PF00574 Clp protease ISU55_04695 PF07724 AAA domain (Cdc48 subfamily) ISU55_04695 PF10431 C-terminal, D2-small domain, of ClpB protein ISU55_04695 PF06689 ClpX C4-type zinc finger ISU55_04700 PF05362 Lon protease (S16) C-terminal proteolytic domain ISU55_04700 PF02190 ATP-dependent protease La (LON) substrate-binding domain ISU55_04700 PF00004 ATPase family associated with various cellular activities (AAA) ISU55_04705 PF00216 Bacterial DNA-binding protein ISU55_04710 PF01797 Transposase IS200 like ISU55_04715 PF13145 PPIC-type PPIASE domain ISU55_04730 PF06508 Queuosine biosynthesis protein QueC ISU55_04735 PF12793 Sugar transport-related sRNA regulator N-term ISU55_04735 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle ISU55_04745 PF00291 Pyridoxal-phosphate dependent enzyme ISU55_04750 PF01037 Lrp/AsnC ligand binding domain ISU55_04750 PF13404 AsnC-type helix-turn-helix domain ISU55_04755 PF00005 ABC transporter ISU55_04755 PF00664 ABC transporter transmembrane region ISU55_04760 PF00664 ABC transporter transmembrane region ISU55_04760 PF00005 ABC transporter ISU55_04765 PF00543 Nitrogen regulatory protein P-II ISU55_04770 PF00909 Ammonium Transporter Family ISU55_04780 PF09619 Type III secretion system lipoprotein chaperone (YscW) ISU55_04785 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain ISU55_04795 PF05321 Haemolysin expression modulating protein ISU55_04800 PF10757 Biofilm formation regulator YbaJ ISU55_04810 PF00444 Ribosomal protein L36 ISU55_04815 PF01197 Ribosomal protein L31 ISU55_04820 PF00873 AcrB/AcrD/AcrF family ISU55_04825 PF00529 HlyD membrane-fusion protein of T1SS ISU55_04825 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion ISU55_04830 PF08361 MAATS-type transcriptional repressor, C-terminal region ISU55_04830 PF00440 Bacterial regulatory proteins, tetR family ISU55_04835 PF02635 DsrE/DsrF-like family ISU55_04840 PF12794 Mechanosensitive ion channel inner membrane domain 1 ISU55_04840 PF12795 Mechanosensitive ion channel porin domain ISU55_04840 PF00924 Mechanosensitive ion channel ISU55_04845 PF10689 Protein of unknown function (DUF2496) ISU55_04855 PF04304 Protein of unknown function (DUF454) ISU55_04860 PF00156 Phosphoribosyl transferase domain ISU55_04865 PF12169 DNA polymerase III subunits gamma and tau domain III ISU55_04865 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding ISU55_04865 PF12170 DNA polymerase III tau subunit V interacting with alpha ISU55_04870 PF02575 YbaB/EbfC DNA-binding family ISU55_04875 PF13662 Toprim domain ISU55_04875 PF02132 RecR protein ISU55_04880 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ISU55_04880 PF00183 Hsp90 protein ISU55_04885 PF05191 Adenylate kinase, active site lid ISU55_04890 PF00762 Ferrochelatase ISU55_04895 PF00175 Oxidoreductase NAD-binding domain ISU55_04895 PF00970 Oxidoreductase FAD-binding domain ISU55_04895 PF00111 2Fe-2S iron-sulfur cluster binding domain ISU55_04900 PF00483 Nucleotidyl transferase ISU55_04905 PF16363 GDP-mannose 4,6 dehydratase ISU55_04910 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family ISU55_04915 PF01370 NAD dependent epimerase/dehydratase family ISU55_04945 PF00534 Glycosyl transferases group 1 ISU55_04945 PF13439 Glycosyltransferase Family 4 ISU55_04955 PF01370 NAD dependent epimerase/dehydratase family ISU55_04960 PF01050 Mannose-6-phosphate isomerase ISU55_04960 PF00483 Nucleotidyl transferase ISU55_04965 PF00535 Glycosyl transferase family 2 ISU55_04970 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain ISU55_04970 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II ISU55_04970 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III ISU55_04970 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I ISU55_04975 PF02706 Chain length determinant protein ISU55_04980 PF00294 pfkB family carbohydrate kinase ISU55_04985 PF02254 TrkA-N domain ISU55_04985 PF00999 Sodium/hydrogen exchanger family ISU55_04990 PF07690 Major Facilitator Superfamily ISU55_05005 PF04073 Aminoacyl-tRNA editing domain ISU55_05010 PF01963 TraB family ISU55_05015 PF00403 Heavy-metal-associated domain ISU55_05020 PF13411 MerR HTH family regulatory protein ISU55_05025 PF01957 NfeD-like C-terminal, partner-binding ISU55_05030 PF16200 C-terminal region of band_7 ISU55_05030 PF01145 SPFH domain / Band 7 family ISU55_05035 PF00085 Thioredoxin ISU55_05040 PF00106 short chain dehydrogenase ISU55_05045 PF13472 GDSL-like Lipase/Acylhydrolase family ISU55_05050 PF00005 ABC transporter ISU55_05060 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain ISU55_05060 PF02222 ATP-grasp domain ISU55_05065 PF00731 AIR carboxylase ISU55_05070 PF00149 Calcineurin-like phosphoesterase ISU55_05075 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD ISU55_05080 PF01406 tRNA synthetases class I (C) catalytic domain ISU55_05080 PF09190 DALR domain ISU55_05085 PF01797 Transposase IS200 like ISU55_05095 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain ISU55_05095 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain ISU55_05125 PF00589 Phage integrase family ISU55_05135 PF01066 CDP-alcohol phosphatidyltransferase ISU55_05145 PF01553 Acyltransferase ISU55_05150 PF12146 Serine aminopeptidase, S33 ISU55_05150 PF12147 Putative methyltransferase ISU55_05155 PF00782 Dual specificity phosphatase, catalytic domain ISU55_05170 PF01695 IstB-like ATP binding protein ISU55_05175 PF02796 Helix-turn-helix domain of resolvase ISU55_05175 PF00665 Integrase core domain ISU55_05180 PF03466 LysR substrate binding domain ISU55_05180 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ISU55_05185 PF00248 Aldo/keto reductase family ISU55_05190 PF00248 Aldo/keto reductase family ISU55_05200 PF14310 Fibronectin type III-like domain ISU55_05200 PF00933 Glycosyl hydrolase family 3 N terminal domain ISU55_05200 PF01915 Glycosyl hydrolase family 3 C-terminal domain ISU55_05215 PF00872 Transposase, Mutator family ISU55_05235 PF03212 Pertactin ISU55_05235 PF13018 Extended Signal Peptide of Type V secretion system ISU55_05235 PF03797 Autotransporter beta-domain ISU55_05235 PF16168 Adhesin of bacterial autotransporter system, probable stalk ISU55_05250 PF05638 Type VI secretion system effector, Hcp ISU55_05270 PF13693 Winged helix-turn-helix DNA-binding ISU55_05275 PF00905 Penicillin binding protein transpeptidase domain ISU55_05275 PF00912 Transglycosylase ISU55_05275 PF06832 Penicillin-Binding Protein C-terminus Family ISU55_05280 PF01797 Transposase IS200 like ISU55_05285 PF11974 Bacterial alpha-2-macroglobulin MG3 domain ISU55_05285 PF17962 Bacterial macroglobulin domain 6 ISU55_05285 PF17973 Bacterial Alpha-2-macroglobulin MG10 domain ISU55_05285 PF07703 Alpha-2-macroglobulin bait region domain ISU55_05285 PF01835 MG2 domain ISU55_05285 PF17972 Bacterial Alpha-2-macroglobulin MG5 domain ISU55_05285 PF00207 Alpha-2-macroglobulin family ISU55_05300 PF00171 Aldehyde dehydrogenase family ISU55_05305 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain ISU55_05305 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain ISU55_05305 PF00205 Thiamine pyrophosphate enzyme, central domain ISU55_05315 PF13407 Periplasmic binding protein domain ISU55_05320 PF00005 ABC transporter ISU55_05325 PF02653 Branched-chain amino acid transport system / permease component ISU55_05330 PF02894 Oxidoreductase family, C-terminal alpha/beta domain ISU55_05330 PF01408 Oxidoreductase family, NAD-binding Rossmann fold ISU55_05335 PF00294 pfkB family carbohydrate kinase ISU55_05340 PF01261 Xylose isomerase-like TIM barrel ISU55_05345 PF04962 KduI/IolB family ISU55_05355 PF00005 ABC transporter ISU55_05355 PF00664 ABC transporter transmembrane region ISU55_05380 PF00196 Bacterial regulatory proteins, luxR family ISU55_05385 PF00313 'Cold-shock' DNA-binding domain ISU55_05390 PF00313 'Cold-shock' DNA-binding domain ISU55_05395 PF02537 CrcB-like protein, Camphor Resistance (CrcB) ISU55_05400 PF02416 mttA/Hcf106 family ISU55_05405 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family ISU55_05405 PF04055 Radical SAM superfamily ISU55_05410 PF03099 Biotin/lipoate A/B protein ligase family ISU55_05415 PF04359 Protein of unknown function (DUF493) ISU55_05420 PF00768 D-alanyl-D-alanine carboxypeptidase ISU55_05420 PF07943 Penicillin-binding protein 5, C-terminal domain ISU55_05425 PF03330 Lytic transglycolase ISU55_05425 PF05036 Sporulation related domain ISU55_05430 PF01098 Cell cycle protein ISU55_05435 PF00905 Penicillin binding protein transpeptidase domain ISU55_05435 PF03717 Penicillin-binding Protein dimerisation domain ISU55_05440 PF02590 Predicted SPOUT methyltransferase ISU55_05450 PF01467 Cytidylyltransferase-like ISU55_05455 PF14840 Processivity clamp loader gamma complex DNA pol III C-term ISU55_05455 PF06144 DNA polymerase III, delta subunit ISU55_05460 PF04390 Lipopolysaccharide-assembly ISU55_05465 PF08264 Anticodon-binding domain of tRNA ISU55_05465 PF00133 tRNA synthetases class I (I, L, M and V) ISU55_05465 PF13603 Leucyl-tRNA synthetase, Domain 2 ISU55_05470 PF07295 Zinc-ribbon containing domain ISU55_05475 PF00005 ABC transporter ISU55_05480 PF00528 Binding-protein-dependent transport system inner membrane component ISU55_05485 PF00528 Binding-protein-dependent transport system inner membrane component ISU55_05490 PF00497 Bacterial extracellular solute-binding proteins, family 3 ISU55_05495 PF00795 Carbon-nitrogen hydrolase ISU55_05500 PF00571 CBS domain ISU55_05500 PF03471 Transporter associated domain ISU55_05505 PF02130 Uncharacterized protein family UPF0054 ISU55_05510 PF02562 PhoH-like protein ISU55_05515 PF04055 Radical SAM superfamily ISU55_05515 PF01938 TRAM domain ISU55_05515 PF00919 Uncharacterized protein family UPF0004 ISU55_05520 PF01494 FAD binding domain ISU55_05555 PF00733 Asparagine synthase ISU55_05555 PF13537 Glutamine amidotransferase domain ISU55_05560 PF13344 Haloacid dehalogenase-like hydrolase ISU55_05565 PF01047 MarR family ISU55_05565 PF00480 ROK family ISU55_05570 PF01979 Amidohydrolase family ISU55_05575 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase ISU55_05580 PF02378 Phosphotransferase system, EIIC ISU55_05580 PF00367 phosphotransferase system, EIIB ISU55_05580 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 ISU55_05585 PF01797 Transposase IS200 like ISU55_05590 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain ISU55_05590 PF00749 tRNA synthetases class I (E and Q), catalytic domain ISU55_05595 PF03573 outer membrane porin, OprD family ISU55_05605 PF01475 Ferric uptake regulator family ISU55_05610 PF00258 Flavodoxin ISU55_05615 PF01402 Ribbon-helix-helix protein, copG family ISU55_05620 PF12697 Alpha/beta hydrolase family ISU55_05630 PF00589 Phage integrase family ISU55_05630 PF13356 Arm DNA-binding domain ISU55_05645 PF01695 IstB-like ATP binding protein ISU55_05650 PF02796 Helix-turn-helix domain of resolvase ISU55_05650 PF00665 Integrase core domain ISU55_05665 PF04069 Substrate binding domain of ABC-type glycine betaine transport system ISU55_05670 PF00528 Binding-protein-dependent transport system inner membrane component ISU55_05675 PF00571 CBS domain ISU55_05675 PF00005 ABC transporter ISU55_05680 PF00268 Ribonucleotide reductase, small chain ISU55_05685 PF00317 Ribonucleotide reductase, all-alpha domain ISU55_05685 PF02867 Ribonucleotide reductase, barrel domain ISU55_05685 PF08343 Ribonucleotide reductase N-terminal ISU55_05690 PF07972 NrdI Flavodoxin like ISU55_05700 PF06392 Acid shock protein repeat ISU55_05705 PF09400 Protein of unknown function (DUF2002) ISU55_05710 PF06711 Protein of unknown function (DUF1198) ISU55_05720 PF00313 'Cold-shock' DNA-binding domain ISU55_05725 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle ISU55_05730 PF00528 Binding-protein-dependent transport system inner membrane component ISU55_05735 PF00528 Binding-protein-dependent transport system inner membrane component ISU55_05735 PF12911 N-terminal TM domain of oligopeptide transport permease C ISU55_05740 PF00005 ABC transporter ISU55_05745 PF00005 ABC transporter ISU55_05750 PF00547 Urease, gamma subunit ISU55_05755 PF00699 Urease beta subunit ISU55_05760 PF01979 Amidohydrolase family ISU55_05760 PF00449 Urease alpha-subunit, N-terminal domain ISU55_05765 PF02814 UreE urease accessory protein, N-terminal domain ISU55_05765 PF05194 UreE urease accessory protein, C-terminal domain ISU55_05770 PF01730 UreF ISU55_05775 PF02492 CobW/HypB/UreG, nucleotide-binding domain ISU55_05785 PF03253 Urea transporter ISU55_05790 PF03824 High-affinity nickel-transport protein ISU55_05795 PF06411 HdeA/HdeB family ISU55_05800 PF02254 TrkA-N domain ISU55_05800 PF07885 Ion channel ISU55_05805 PF02537 CrcB-like protein, Camphor Resistance (CrcB) ISU55_05810 PF02537 CrcB-like protein, Camphor Resistance (CrcB) ISU55_05820 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit ISU55_05825 PF02378 Phosphotransferase system, EIIC ISU55_05830 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit ISU55_05835 PF12833 Helix-turn-helix domain ISU55_05835 PF07883 Cupin domain ISU55_05840 PF04794 YdjC-like protein ISU55_05850 PF03925 SeqA protein C-terminal domain ISU55_05850 PF17206 SeqA protein N-terminal domain ISU55_05855 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II ISU55_05855 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I ISU55_05855 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III ISU55_05855 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain ISU55_05870 PF00072 Response regulator receiver domain ISU55_05870 PF00486 Transcriptional regulatory protein, C terminal ISU55_05875 PF00512 His Kinase A (phospho-acceptor) domain ISU55_05875 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ISU55_05875 PF02702 Osmosensitive K+ channel His kinase sensor domain ISU55_05875 PF13492 GAF domain ISU55_05875 PF13493 Domain of unknown function (DUF4118) ISU55_05880 PF02669 K+-transporting ATPase, c chain ISU55_05890 PF03814 Potassium-transporting ATPase A subunit ISU55_05905 PF10725 Protein of unknown function (DUF2517) ISU55_05910 PF08349 Protein of unknown function (DUF1722) ISU55_05915 PF00875 DNA photolyase ISU55_05915 PF03441 FAD binding domain of DNA photolyase ISU55_05920 PF02112 cAMP phosphodiesterases class-II ISU55_05925 PF01784 NIF3 (NGG1p interacting factor 3) ISU55_05940 PF02626 Carboxyltransferase domain, subdomain A and B ISU55_05945 PF03746 LamB/YcsF family ISU55_05960 PF01470 Pyroglutamyl peptidase ISU55_05965 PF03167 Uracil DNA glycosylase superfamily ISU55_05970 PF01228 Glycine radical ISU55_05980 PF12796 Ankyrin repeats (3 copies) ISU55_05985 PF00270 DEAD/DEAH box helicase ISU55_05985 PF00271 Helicase conserved C-terminal domain ISU55_05990 PF05175 Methyltransferase small domain ISU55_05995 PF02910 Fumarate reductase flavoprotein C-term ISU55_05995 PF00890 FAD binding domain ISU55_06000 PF08281 Sigma-70, region 4 ISU55_06000 PF04542 Sigma-70 region 2 ISU55_06005 PF03872 Anti sigma-E protein RseA, N-terminal domain ISU55_06005 PF03873 Anti sigma-E protein RseA, C-terminal domain ISU55_06010 PF17188 MucB/RseB C-terminal domain ISU55_06010 PF03888 MucB/RseB N-terminal domain ISU55_06025 PF00009 Elongation factor Tu GTP binding domain ISU55_06025 PF03144 Elongation factor Tu domain 2 ISU55_06025 PF00679 Elongation factor G C-terminus ISU55_06025 PF06421 GTP-binding protein LepA C-terminus ISU55_06030 PF10502 Signal peptidase, peptidase S26 ISU55_06035 PF14622 Ribonuclease-III-like ISU55_06035 PF00035 Double-stranded RNA binding motif ISU55_06040 PF01926 50S ribosome-binding GTPase ISU55_06040 PF07650 KH domain ISU55_06045 PF02565 Recombination protein O C terminal ISU55_06045 PF11967 Recombination protein O N terminal ISU55_06050 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ ISU55_06055 PF01648 4'-phosphopantetheinyl transferase superfamily ISU55_06060 PF01797 Transposase IS200 like ISU55_06065 PF12838 4Fe-4S dicluster domain ISU55_06070 PF01418 Helix-turn-helix domain, rpiR family ISU55_06070 PF01380 SIS domain ISU55_06075 PF01380 SIS domain ISU55_06085 PF14437 MafB19-like deaminase ISU55_06090 PF00497 Bacterial extracellular solute-binding proteins, family 3 ISU55_06090 PF01464 Transglycosylase SLT domain ISU55_06095 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain ISU55_06095 PF02769 AIR synthase related protein, C-terminal domain ISU55_06095 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal ISU55_06120 PF01797 Transposase IS200 like ISU55_06125 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ISU55_06125 PF00512 His Kinase A (phospho-acceptor) domain ISU55_06130 PF13942 YfhG lipoprotein ISU55_06135 PF00072 Response regulator receiver domain ISU55_06135 PF00158 Sigma-54 interaction domain ISU55_06140 PF00795 Carbon-nitrogen hydrolase ISU55_06140 PF02540 NAD synthase ISU55_06145 PF00543 Nitrogen regulatory protein P-II ISU55_06155 PF02796 Helix-turn-helix domain of resolvase ISU55_06155 PF00665 Integrase core domain ISU55_06160 PF01695 IstB-like ATP binding protein ISU55_06170 PF00970 Oxidoreductase FAD-binding domain ISU55_06170 PF00175 Oxidoreductase NAD-binding domain ISU55_06170 PF00042 Globin ISU55_06175 PF00464 Serine hydroxymethyltransferase ISU55_06185 PF13505 Outer membrane protein beta-barrel domain ISU55_06190 PF12832 MFS_1 like family ISU55_06195 PF00874 PRD domain ISU55_06200 PF06226 Protein of unknown function (DUF1007) ISU55_06205 PF03824 High-affinity nickel-transport protein ISU55_06210 PF00459 Inositol monophosphatase family ISU55_06215 PF00588 SpoU rRNA Methylase family ISU55_06225 PF00266 Aminotransferase class-V ISU55_06230 PF01592 NifU-like N terminal domain ISU55_06235 PF01521 Iron-sulphur cluster biosynthesis ISU55_06240 PF00226 DnaJ domain ISU55_06240 PF07743 HSCB C-terminal oligomerisation domain ISU55_06245 PF00012 Hsp70 protein ISU55_06250 PF00111 2Fe-2S iron-sulfur cluster binding domain ISU55_06255 PF04384 Iron-sulphur cluster assembly ISU55_06260 PF00883 Cytosol aminopeptidase family, catalytic domain ISU55_06260 PF12404 Peptidase ISU55_06265 PF14581 SseB protein C-terminal domain ISU55_06265 PF07179 SseB protein N-terminal domain ISU55_06280 PF03212 Pertactin ISU55_06280 PF03797 Autotransporter beta-domain ISU55_06280 PF16168 Adhesin of bacterial autotransporter system, probable stalk ISU55_06285 PF16168 Adhesin of bacterial autotransporter system, probable stalk ISU55_06285 PF03797 Autotransporter beta-domain ISU55_06285 PF03212 Pertactin ISU55_06295 PF00334 Nucleoside diphosphate kinase ISU55_06300 PF04055 Radical SAM superfamily ISU55_06310 PF13464 Domain of unknown function (DUF4115) ISU55_06315 PF04551 GcpE protein ISU55_06320 PF03129 Anticodon binding domain ISU55_06320 PF13393 Histidyl-tRNA synthetase ISU55_06325 PF09976 Tetratricopeptide repeat-like domain ISU55_06330 PF13360 PQQ-like domain ISU55_06335 PF01926 50S ribosome-binding GTPase ISU55_06335 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal ISU55_06345 PF07191 zinc-ribbons ISU55_06350 PF02601 Exonuclease VII, large subunit ISU55_06350 PF13742 OB-fold nucleic acid binding domain ISU55_06355 PF00571 CBS domain ISU55_06355 PF00478 IMP dehydrogenase / GMP reductase domain ISU55_06360 PF02540 NAD synthase ISU55_06360 PF00958 GMP synthase C terminal domain ISU55_06360 PF00117 Glutamine amidotransferase class-I ISU55_06365 PF01797 Transposase IS200 like ISU55_06370 PF05638 Type VI secretion system effector, Hcp ISU55_06400 PF00872 Transposase, Mutator family ISU55_06415 PF08543 Phosphomethylpyrimidine kinase ISU55_06435 PF00781 Diacylglycerol kinase catalytic domain ISU55_06440 PF01136 Peptidase family U32 ISU55_06440 PF16325 Peptidase family U32 C-terminal domain ISU55_06445 PF07411 Domain of unknown function (DUF1508) ISU55_06450 PF00072 Response regulator receiver domain ISU55_06450 PF00486 Transcriptional regulatory protein, C terminal ISU55_06460 PF07690 Major Facilitator Superfamily ISU55_06465 PF00873 AcrB/AcrD/AcrF family ISU55_06470 PF00873 AcrB/AcrD/AcrF family ISU55_06475 PF13533 Biotin-lipoyl like ISU55_06480 PF08402 TOBE domain ISU55_06480 PF00005 ABC transporter ISU55_06485 PF00155 Aminotransferase class I and II ISU55_06485 PF00392 Bacterial regulatory proteins, gntR family ISU55_06490 PF00202 Aminotransferase class-III ISU55_06500 PF00528 Binding-protein-dependent transport system inner membrane component ISU55_06505 PF00528 Binding-protein-dependent transport system inner membrane component ISU55_06510 PF00012 Hsp70 protein ISU55_06515 PF00571 CBS domain ISU55_06515 PF01769 Divalent cation transporter ISU55_06515 PF03448 MgtE intracellular N domain ISU55_06525 PF02541 Ppx/GppA phosphatase family ISU55_06530 PF13089 Polyphosphate kinase N-terminal domain ISU55_06530 PF13090 Polyphosphate kinase C-terminal domain 2 ISU55_06530 PF02503 Polyphosphate kinase middle domain ISU55_06530 PF17941 Polyphosphate kinase C-terminal domain 1 ISU55_06535 PF00528 Binding-protein-dependent transport system inner membrane component ISU55_06540 PF00528 Binding-protein-dependent transport system inner membrane component ISU55_06545 PF00005 ABC transporter ISU55_06555 PF13302 Acetyltransferase (GNAT) domain ISU55_06560 PF00551 Formyl transferase ISU55_06565 PF02769 AIR synthase related protein, C-terminal domain ISU55_06565 PF00586 AIR synthase related protein, N-terminal domain ISU55_06575 PF01797 Transposase IS200 like ISU55_06580 PF00308 Bacterial dnaA protein ISU55_06585 PF03960 ArsC family ISU55_06590 PF01435 Peptidase family M48 ISU55_06590 PF07720 Tetratricopeptide repeat ISU55_06595 PF01594 AI-2E family transporter ISU55_06605 PF00578 AhpC/TSA family ISU55_06610 PF01842 ACT domain ISU55_06615 PF00701 Dihydrodipicolinate synthetase family ISU55_06620 PF06804 NlpB/DapX lipoprotein ISU55_06625 PF01797 Transposase IS200 like ISU55_06630 PF01259 SAICAR synthetase ISU55_06635 PF04228 Putative neutral zinc metallopeptidase ISU55_06640 PF04284 Protein of unknown function (DUF441) ISU55_06645 PF17176 tRNA-binding domain ISU55_06645 PF05127 Helicase ISU55_06645 PF13718 GNAT acetyltransferase 2 ISU55_06645 PF08351 Domain of unknown function (DUF1726) ISU55_06650 PF13980 Uncharacterised protein family (UPF0370) ISU55_06655 PF02557 D-alanyl-D-alanine carboxypeptidase ISU55_06660 PF01546 Peptidase family M20/M25/M40 ISU55_06660 PF07687 Peptidase dimerisation domain ISU55_06665 PF03960 ArsC family ISU55_06680 PF00528 Binding-protein-dependent transport system inner membrane component ISU55_06685 PF00005 ABC transporter ISU55_06685 PF08402 TOBE domain ISU55_06695 PF00884 Sulfatase ISU55_06700 PF04055 Radical SAM superfamily ISU55_06700 PF13186 Iron-sulfur cluster-binding domain ISU55_06705 PF04307 LexA-binding, inner membrane-associated putative hydrolase ISU55_06715 PF00873 AcrB/AcrD/AcrF family ISU55_06725 PF00196 Bacterial regulatory proteins, luxR family ISU55_06725 PF00072 Response regulator receiver domain ISU55_06730 PF13187 4Fe-4S dicluster domain ISU55_06730 PF12800 4Fe-4S binding domain ISU55_06730 PF00037 4Fe-4S binding domain ISU55_06735 PF03927 NapD protein ISU55_06745 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) ISU55_06750 PF03264 NapC/NirT cytochrome c family, N-terminal region ISU55_06755 PF00293 NUDIX domain ISU55_06765 PF01695 IstB-like ATP binding protein ISU55_06770 PF00665 Integrase core domain ISU55_06770 PF02796 Helix-turn-helix domain of resolvase ISU55_06780 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 ISU55_06785 PF01218 Coproporphyrinogen III oxidase ISU55_06790 PF00583 Acetyltransferase (GNAT) family ISU55_06800 PF03212 Pertactin ISU55_06800 PF13018 Extended Signal Peptide of Type V secretion system ISU55_06800 PF03797 Autotransporter beta-domain ISU55_06800 PF16168 Adhesin of bacterial autotransporter system, probable stalk ISU55_06805 PF04076 Bacterial OB fold (BOF) protein ISU55_06810 PF06572 Protein of unknown function (DUF1131) ISU55_06815 PF04261 Dyp-type peroxidase family ISU55_06820 PF00701 Dihydrodipicolinate synthetase family ISU55_06825 PF04131 Putative N-acetylmannosamine-6-phosphate epimerase ISU55_06830 PF12468 Type III secretion system leucine rich repeat protein ISU55_06835 PF00480 ROK family ISU55_06840 PF04074 YhcH/YjgK/YiaL ISU55_06845 PF01418 Helix-turn-helix domain, rpiR family ISU55_06845 PF01380 SIS domain ISU55_06850 PF07690 Major Facilitator Superfamily ISU55_06860 PF00528 Binding-protein-dependent transport system inner membrane component ISU55_06865 PF00528 Binding-protein-dependent transport system inner membrane component ISU55_06870 PF00005 ABC transporter ISU55_06875 PF00291 Pyridoxal-phosphate dependent enzyme ISU55_06885 PF00486 Transcriptional regulatory protein, C terminal ISU55_06885 PF00072 Response regulator receiver domain ISU55_06890 PF00512 His Kinase A (phospho-acceptor) domain ISU55_06890 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ISU55_06890 PF00672 HAMP domain ISU55_06900 PF00155 Aminotransferase class I and II ISU55_06910 PF00557 Metallopeptidase family M24 ISU55_06920 PF00474 Sodium:solute symporter family ISU55_06925 PF07992 Pyridine nucleotide-disulphide oxidoreductase ISU55_06925 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain ISU55_06930 PF12704 MacB-like periplasmic core domain ISU55_06930 PF00005 ABC transporter ISU55_06930 PF02687 FtsX-like permease family ISU55_06935 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion ISU55_06940 PF00072 Response regulator receiver domain ISU55_06940 PF00486 Transcriptional regulatory protein, C terminal ISU55_06945 PF16527 Two-component sensor protein CpxA, periplasmic domain ISU55_06945 PF00672 HAMP domain ISU55_06945 PF00512 His Kinase A (phospho-acceptor) domain ISU55_06945 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ISU55_06950 PF00665 Integrase core domain ISU55_06950 PF02796 Helix-turn-helix domain of resolvase ISU55_06955 PF01695 IstB-like ATP binding protein ISU55_06960 PF01797 Transposase IS200 like ISU55_06965 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 ISU55_06970 PF00391 PEP-utilising enzyme, mobile domain ISU55_06970 PF02896 PEP-utilising enzyme, TIM barrel domain ISU55_06970 PF05524 PEP-utilising enzyme, N-terminal ISU55_06975 PF00381 PTS HPr component phosphorylation site ISU55_06980 PF00291 Pyridoxal-phosphate dependent enzyme ISU55_06990 PF04354 ZipA, C-terminal FtsZ-binding domain ISU55_06995 PF03119 NAD-dependent DNA ligase C4 zinc finger domain ISU55_06995 PF01653 NAD-dependent DNA ligase adenylation domain ISU55_06995 PF12826 Helix-hairpin-helix motif ISU55_06995 PF03120 NAD-dependent DNA ligase OB-fold domain ISU55_06995 PF00533 BRCA1 C Terminus (BRCT) domain ISU55_07000 PF12843 Putative quorum-sensing-regulated virulence factor ISU55_07020 PF01797 Transposase IS200 like ISU55_07025 PF00749 tRNA synthetases class I (E and Q), catalytic domain ISU55_07060 PF07670 Nucleoside recognition ISU55_07060 PF01773 Na+ dependent nucleoside transporter N-terminus ISU55_07060 PF07662 Na+ dependent nucleoside transporter C-terminus ISU55_07065 PF01566 Natural resistance-associated macrophage protein ISU55_07075 PF00248 Aldo/keto reductase family ISU55_07080 PF03466 LysR substrate binding domain ISU55_07080 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ISU55_07090 PF02685 Glucokinase ISU55_07095 PF07350 Protein of unknown function (DUF1479) ISU55_07100 PF00155 Aminotransferase class I and II ISU55_07105 PF01292 Prokaryotic cytochrome b561 ISU55_07115 PF03783 Curli production assembly/transport component CsgG ISU55_07125 PF05643 Putative bacterial lipoprotein (DUF799) ISU55_07135 PF02613 Nitrate reductase delta subunit ISU55_07140 PF04976 DMSO reductase anchor subunit (DmsC) ISU55_07145 PF13247 4Fe-4S dicluster domain ISU55_07145 PF12800 4Fe-4S binding domain ISU55_07150 PF01568 Molydopterin dinucleotide binding domain ISU55_07150 PF00384 Molybdopterin oxidoreductase ISU55_07150 PF04879 Molybdopterin oxidoreductase Fe4S4 domain ISU55_07160 PF05638 Type VI secretion system effector, Hcp ISU55_07170 PF00005 ABC transporter ISU55_07175 PF00528 Binding-protein-dependent transport system inner membrane component ISU55_07230 PF05947 Type VI secretion system, TssF ISU55_07235 PF17871 AAA lid domain ISU55_07235 PF00004 ATPase family associated with various cellular activities (AAA) ISU55_07235 PF07724 AAA domain (Cdc48 subfamily) ISU55_07235 PF10431 C-terminal, D2-small domain, of ClpB protein ISU55_07240 PF16970 Type-1 fimbrial protein, A ISU55_07245 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain ISU55_07245 PF02753 Pili assembly chaperone PapD, C-terminal domain ISU55_07250 PF00577 Outer membrane usher protein ISU55_07250 PF13953 PapC C-terminal domain ISU55_07250 PF13954 PapC N-terminal domain ISU55_07255 PF00872 Transposase, Mutator family ISU55_07260 PF13954 PapC N-terminal domain ISU55_07260 PF00577 Outer membrane usher protein ISU55_07260 PF13953 PapC C-terminal domain ISU55_07270 PF05591 Type VI secretion system, VipA, VC_A0107 or Hcp2 ISU55_07275 PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath ISU55_07290 PF05936 Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE ISU55_07300 PF02796 Helix-turn-helix domain of resolvase ISU55_07300 PF00665 Integrase core domain ISU55_07305 PF01695 IstB-like ATP binding protein ISU55_07315 PF06744 Type VI secretion protein IcmF C-terminal ISU55_07315 PF14331 ImcF-related N-terminal domain ISU55_07315 PF06761 Intracellular multiplication and human macrophage-killing ISU55_07320 PF06715 Gp5 C-terminal repeat (3 copies) ISU55_07320 PF04717 Type VI secretion system, phage-baseplate injector ISU55_07335 PF07024 ImpE protein ISU55_07350 PF08274 PhnA Zinc-Ribbon ISU55_07350 PF03831 PhnA domain ISU55_07360 PF04011 LemA family ISU55_07375 PF00005 ABC transporter ISU55_07380 PF03379 CcmB protein ISU55_07385 PF01578 Cytochrome C assembly protein ISU55_07390 PF04995 Heme exporter protein D (CcmD) ISU55_07395 PF03100 CcmE ISU55_07400 PF01578 Cytochrome C assembly protein ISU55_07400 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal ISU55_07405 PF08534 Redoxin ISU55_07410 PF03918 Cytochrome C biogenesis protein ISU55_07415 PF03918 Cytochrome C biogenesis protein ISU55_07420 PF04333 MlaA lipoprotein ISU55_07425 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) ISU55_07430 PF04175 Protein of unknown function (DUF406) ISU55_07435 PF00108 Thiolase, N-terminal domain ISU55_07435 PF02803 Thiolase, C-terminal domain ISU55_07440 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain ISU55_07440 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ISU55_07440 PF00378 Enoyl-CoA hydratase/isomerase ISU55_07445 PF00300 Histidine phosphatase superfamily (branch 1) ISU55_07455 PF01713 Smr domain ISU55_07460 PF05175 Methyltransferase small domain ISU55_07465 PF01264 Chorismate synthase ISU55_07470 PF03411 Penicillin-insensitive murein endopeptidase ISU55_07475 PF01925 Sulfite exporter TauE/SafE ISU55_07480 PF04315 Elongation factor P hydroxylase ISU55_07485 PF08891 YfcL protein ISU55_07490 PF01266 FAD dependent oxidoreductase ISU55_07490 PF05430 S-adenosyl-L-methionine-dependent methyltransferase ISU55_07495 PF00109 Beta-ketoacyl synthase, N-terminal domain ISU55_07495 PF02801 Beta-ketoacyl synthase, C-terminal domain ISU55_07500 PF01177 Asp/Glu/Hydantoin racemase ISU55_07505 PF00419 Fimbrial protein ISU55_07515 PF00892 EamA-like transporter family ISU55_07525 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ISU55_07525 PF11890 Domain of unknown function (DUF3410) ISU55_07525 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain ISU55_07530 PF02774 Semialdehyde dehydrogenase, dimerisation domain ISU55_07530 PF01118 Semialdehyde dehydrogenase, NAD binding domain ISU55_07535 PF01416 tRNA pseudouridine synthase ISU55_07540 PF09335 SNARE associated Golgi protein ISU55_07545 PF17848 Acetyl-coA carboxylase zinc finger domain ISU55_07545 PF01039 Carboxyl transferase domain ISU55_07550 PF08245 Mur ligase middle domain ISU55_07550 PF02875 Mur ligase family, glutamate ligase domain ISU55_07555 PF05036 Sporulation related domain ISU55_07560 PF02674 Colicin V production protein ISU55_07565 PF00156 Phosphoribosyl transferase domain ISU55_07570 PF02441 Flavoprotein ISU55_07575 PF00497 Bacterial extracellular solute-binding proteins, family 3 ISU55_07580 PF00528 Binding-protein-dependent transport system inner membrane component ISU55_07585 PF00528 Binding-protein-dependent transport system inner membrane component ISU55_07590 PF00005 ABC transporter ISU55_07595 PF08338 Domain of unknown function (DUF1731) ISU55_07595 PF01370 NAD dependent epimerase/dehydratase family ISU55_07605 PF12850 Calcineurin-like phosphoesterase superfamily domain ISU55_07610 PF00293 NUDIX domain ISU55_07615 PF03611 PTS system sugar-specific permease component ISU55_07620 PF00872 Transposase, Mutator family ISU55_07630 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 ISU55_07635 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family ISU55_07635 PF00356 Bacterial regulatory proteins, lacI family ISU55_07640 PF07085 DRTGG domain ISU55_07640 PF01515 Phosphate acetyl/butaryl transferase ISU55_07645 PF00871 Acetokinase family ISU55_07650 PF04217 Protein of unknown function, DUF412 ISU55_07655 PF03887 YfbU domain ISU55_07660 PF13419 Haloacid dehalogenase-like hydrolase ISU55_07665 PF02080 TrkA-C domain ISU55_07665 PF03600 Citrate transporter ISU55_07675 PF00155 Aminotransferase class I and II ISU55_07680 PF03466 LysR substrate binding domain ISU55_07680 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ISU55_07685 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 ISU55_07690 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit ISU55_07695 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit ISU55_07695 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit ISU55_07705 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region ISU55_07705 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit ISU55_07705 PF10531 SLBB domain ISU55_07710 PF01568 Molydopterin dinucleotide binding domain ISU55_07710 PF00384 Molybdopterin oxidoreductase ISU55_07710 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region ISU55_07710 PF04879 Molybdopterin oxidoreductase Fe4S4 domain ISU55_07715 PF00146 NADH dehydrogenase ISU55_07720 PF12838 4Fe-4S dicluster domain ISU55_07725 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 ISU55_07730 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L ISU55_07735 PF00361 Proton-conducting membrane transporter ISU55_07735 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus ISU55_07740 PF00361 Proton-conducting membrane transporter ISU55_07745 PF00361 Proton-conducting membrane transporter ISU55_07760 PF00106 short chain dehydrogenase ISU55_07765 PF01202 Shikimate kinase ISU55_07780 PF02638 Glycosyl hydrolase-like 10 ISU55_07785 PF00356 Bacterial regulatory proteins, lacI family ISU55_07790 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ISU55_07790 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain ISU55_07795 PF07690 Major Facilitator Superfamily ISU55_07800 PF03928 Haem-degrading ISU55_07805 PF00920 Dehydratase family ISU55_07810 PF05957 Bacterial protein of unknown function (DUF883) ISU55_07820 PF00425 chorismate binding enzyme ISU55_07825 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain ISU55_07825 PF16582 Middle domain of thiamine pyrophosphate ISU55_07825 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain ISU55_07830 PF12697 Alpha/beta hydrolase family ISU55_07835 PF00378 Enoyl-CoA hydratase/isomerase ISU55_07840 PF13378 Enolase C-terminal domain-like ISU55_07845 PF13193 AMP-binding enzyme C-terminal domain ISU55_07845 PF00501 AMP-binding enzyme ISU55_07850 PF02885 Glycosyl transferase family, helical bundle domain ISU55_07855 PF07338 Protein of unknown function (DUF1471) ISU55_07860 PF05971 RNA methyltransferase ISU55_07870 PF01695 IstB-like ATP binding protein ISU55_07875 PF00665 Integrase core domain ISU55_07875 PF02796 Helix-turn-helix domain of resolvase ISU55_07880 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ISU55_07880 PF08447 PAS fold ISU55_07880 PF13426 PAS domain ISU55_07885 PF00005 ABC transporter ISU55_07890 PF00528 Binding-protein-dependent transport system inner membrane component ISU55_07895 PF00497 Bacterial extracellular solute-binding proteins, family 3 ISU55_07905 PF00210 Ferritin-like domain ISU55_07910 PF13649 Methyltransferase domain ISU55_07920 PF00892 EamA-like transporter family ISU55_07925 PF13505 Outer membrane protein beta-barrel domain ISU55_07945 PF00107 Zinc-binding dehydrogenase ISU55_07945 PF08240 Alcohol dehydrogenase GroES-like domain ISU55_07950 PF13407 Periplasmic binding protein domain ISU55_07955 PF00005 ABC transporter ISU55_07960 PF02653 Branched-chain amino acid transport system / permease component ISU55_07965 PF00356 Bacterial regulatory proteins, lacI family ISU55_07970 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ISU55_07970 PF03466 LysR substrate binding domain ISU55_07975 PF00180 Isocitrate/isopropylmalate dehydrogenase ISU55_07985 PF02028 BCCT, betaine/carnitine/choline family transporter ISU55_07995 PF00175 Oxidoreductase NAD-binding domain ISU55_07995 PF00111 2Fe-2S iron-sulfur cluster binding domain ISU55_07995 PF00970 Oxidoreductase FAD-binding domain ISU55_08000 PF08479 POTRA domain, ShlB-type ISU55_08000 PF17287 POTRA domain ISU55_08000 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB ISU55_08045 PF04829 Pre-toxin domain with VENN motif ISU55_08045 PF05860 haemagglutination activity domain ISU55_08045 PF15526 Novel toxin 21 ISU55_08045 PF05594 Haemagluttinin repeat ISU55_08045 PF13332 Hemagglutinin repeat ISU55_08055 PF17912 MalK OB fold domain ISU55_08055 PF00005 ABC transporter ISU55_08060 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain ISU55_08060 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III ISU55_08060 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II ISU55_08060 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I ISU55_08065 PF00356 Bacterial regulatory proteins, lacI family ISU55_08075 PF00528 Binding-protein-dependent transport system inner membrane component ISU55_08080 PF00528 Binding-protein-dependent transport system inner membrane component ISU55_08085 PF04041 beta-1,4-mannooligosaccharide phosphorylase ISU55_08105 PF00924 Mechanosensitive ion channel ISU55_08110 PF01867 CRISPR associated protein Cas1 ISU55_08120 PF09611 CRISPR-associated protein (Cas_Csy1) ISU55_08125 PF09614 CRISPR-associated protein (Cas_Csy2) ISU55_08130 PF09615 CRISPR-associated protein (Cas_Csy3) ISU55_08135 PF09618 CRISPR-associated protein (Cas_Csy4) ISU55_08140 PF00248 Aldo/keto reductase family ISU55_08160 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ISU55_08160 PF03466 LysR substrate binding domain ISU55_08165 PF00196 Bacterial regulatory proteins, luxR family ISU55_08165 PF03472 Autoinducer binding domain ISU55_08170 PF00765 Autoinducer synthase ISU55_08185 PF12368 Rhodanase C-terminal ISU55_08185 PF17773 UPF0176 acylphosphatase like domain ISU55_08185 PF00581 Rhodanese-like domain ISU55_08190 PF01594 AI-2E family transporter ISU55_08200 PF00196 Bacterial regulatory proteins, luxR family ISU55_08205 PF01266 FAD dependent oxidoreductase ISU55_08210 PF00872 Transposase, Mutator family ISU55_08220 PF03992 Antibiotic biosynthesis monooxygenase ISU55_08225 PF01979 Amidohydrolase family ISU55_08230 PF06183 DinI-like family ISU55_08235 PF13991 BssS protein family ISU55_08240 PF00872 Transposase, Mutator family ISU55_08245 PF00575 S1 RNA binding domain ISU55_08245 PF12111 Polyribonucleotide phosphorylase C terminal ISU55_08245 PF10150 Ribonuclease E/G family ISU55_08250 PF00849 RNA pseudouridylate synthase ISU55_08250 PF01479 S4 domain ISU55_08255 PF02545 Maf-like protein ISU55_08260 PF02620 Large ribosomal RNA subunit accumulation protein YceD ISU55_08265 PF01783 Ribosomal L32p protein family ISU55_08270 PF02504 Fatty acid synthesis protein ISU55_08275 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III ISU55_08275 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal ISU55_08280 PF00698 Acyl transferase domain ISU55_08290 PF00550 Phosphopantetheine attachment site ISU55_08295 PF02801 Beta-ketoacyl synthase, C-terminal domain ISU55_08295 PF00109 Beta-ketoacyl synthase, N-terminal domain ISU55_08300 PF01797 Transposase IS200 like ISU55_08305 PF01063 Amino-transferase class IV ISU55_08310 PF02618 YceG-like family ISU55_08315 PF02223 Thymidylate kinase ISU55_08320 PF09115 DNA polymerase III, delta subunit, C terminal ISU55_08325 PF01026 TatD related DNase ISU55_08330 PF00367 phosphotransferase system, EIIB ISU55_08330 PF02378 Phosphotransferase system, EIIC ISU55_08335 PF01797 Transposase IS200 like ISU55_08340 PF08501 Shikimate dehydrogenase substrate binding domain ISU55_08345 PF01230 HIT domain ISU55_08350 PF07233 Protein of unknown function (DUF1425) ISU55_08355 PF08139 Prokaryotic membrane lipoprotein lipid attachment site ISU55_08355 PF13036 Peptidoglycan-synthase activator LpoB ISU55_08360 PF01636 Phosphotransferase enzyme family ISU55_08365 PF00933 Glycosyl hydrolase family 3 N terminal domain ISU55_08370 PF05728 Uncharacterised protein family (UPF0227) ISU55_08375 PF07992 Pyridine nucleotide-disulphide oxidoreductase ISU55_08390 PF00872 Transposase, Mutator family ISU55_08395 PF05433 Glycine zipper 2TM domain ISU55_08400 PF02559 CarD-like/TRCF domain ISU55_08400 PF00270 DEAD/DEAH box helicase ISU55_08400 PF17757 UvrB interaction domain ISU55_08400 PF03461 TRCF domain ISU55_08400 PF00271 Helicase conserved C-terminal domain ISU55_08405 PF12704 MacB-like periplasmic core domain ISU55_08405 PF02687 FtsX-like permease family ISU55_08410 PF00005 ABC transporter ISU55_08415 PF12704 MacB-like periplasmic core domain ISU55_08415 PF02687 FtsX-like permease family ISU55_08420 PF00480 ROK family ISU55_08425 PF00480 ROK family ISU55_08430 PF02146 Sir2 family ISU55_08435 PF01546 Peptidase family M20/M25/M40 ISU55_08435 PF07687 Peptidase dimerisation domain ISU55_08440 PF08007 Cupin superfamily protein ISU55_08445 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ISU55_08445 PF08918 PhoQ Sensor ISU55_08450 PF00072 Response regulator receiver domain ISU55_08450 PF00486 Transcriptional regulatory protein, C terminal ISU55_08460 PF08328 Adenylosuccinate lyase C-terminal ISU55_08460 PF00206 Lyase ISU55_08465 PF04356 Protein of unknown function (DUF489) ISU55_08475 PF00293 NUDIX domain ISU55_08480 PF00849 RNA pseudouridylate synthase ISU55_08485 PF00180 Isocitrate/isopropylmalate dehydrogenase ISU55_08490 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family ISU55_08490 PF00356 Bacterial regulatory proteins, lacI family ISU55_08500 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ISU55_08500 PF08447 PAS fold ISU55_08505 PF05368 NmrA-like family ISU55_08510 PF01638 HxlR-like helix-turn-helix ISU55_08520 PF00328 Histidine phosphatase superfamily (branch 2) ISU55_08525 PF14001 YdfZ protein ISU55_08535 PF01037 Lrp/AsnC ligand binding domain ISU55_08535 PF13404 AsnC-type helix-turn-helix domain ISU55_08545 PF10777 Inner membrane protein YlaC ISU55_08550 PF00550 Phosphopantetheine attachment site ISU55_08550 PF00109 Beta-ketoacyl synthase, N-terminal domain ISU55_08550 PF14765 Polyketide synthase dehydratase ISU55_08550 PF02801 Beta-ketoacyl synthase, C-terminal domain ISU55_08550 PF00107 Zinc-binding dehydrogenase ISU55_08550 PF08240 Alcohol dehydrogenase GroES-like domain ISU55_08550 PF00698 Acyl transferase domain ISU55_08550 PF08659 KR domain ISU55_08550 PF16197 Ketoacyl-synthetase C-terminal extension ISU55_08555 PF01695 IstB-like ATP binding protein ISU55_08560 PF00665 Integrase core domain ISU55_08560 PF02796 Helix-turn-helix domain of resolvase ISU55_08565 PF16353 Domain of unknown function(DUF4981) ISU55_08565 PF02836 Glycosyl hydrolases family 2, TIM barrel domain ISU55_08565 PF00703 Glycosyl hydrolases family 2 ISU55_08565 PF02929 Beta galactosidase small chain ISU55_08565 PF02837 Glycosyl hydrolases family 2, sugar binding domain ISU55_08570 PF00313 'Cold-shock' DNA-binding domain ISU55_08575 PF10781 Dextransucrase DSRB ISU55_08585 PF02308 MgtC family ISU55_08590 PF00689 Cation transporting ATPase, C-terminus ISU55_08590 PF00690 Cation transporter/ATPase, N-terminus ISU55_08600 PF05280 Flagellar transcriptional activator (FlhC) ISU55_08605 PF01618 MotA/TolQ/ExbB proton channel family ISU55_08610 PF00691 OmpA family ISU55_08610 PF13677 Membrane MotB of proton-channel complex MotA/MotB ISU55_08615 PF01584 CheW-like domain ISU55_08615 PF09078 CheY binding ISU55_08615 PF02895 Signal transducing histidine kinase, homodimeric domain ISU55_08615 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ISU55_08615 PF01627 Hpt domain ISU55_08620 PF01584 CheW-like domain ISU55_08625 PF07690 Major Facilitator Superfamily ISU55_08630 PF01042 Endoribonuclease L-PSP ISU55_08640 PF08348 YheO-like PAS domain ISU55_08640 PF13309 HTH domain ISU55_08645 PF12951 Passenger-associated-transport-repeat ISU55_08660 PF02203 Tar ligand binding domain homologue ISU55_08660 PF00672 HAMP domain ISU55_08660 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ISU55_08665 PF00672 HAMP domain ISU55_08665 PF02203 Tar ligand binding domain homologue ISU55_08665 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ISU55_08670 PF03705 CheR methyltransferase, all-alpha domain ISU55_08670 PF01739 CheR methyltransferase, SAM binding domain ISU55_08675 PF00072 Response regulator receiver domain ISU55_08675 PF01339 CheB methylesterase ISU55_08680 PF00072 Response regulator receiver domain ISU55_08685 PF04344 Chemotaxis phosphatase, CheZ ISU55_08690 PF01510 N-acetylmuramoyl-L-alanine amidase ISU55_08695 PF13018 Extended Signal Peptide of Type V secretion system ISU55_08695 PF03895 YadA-like membrane anchor domain ISU55_08695 PF05658 Head domain of trimeric autotransporter adhesin ISU55_08695 PF05662 Coiled stalk of trimeric autotransporter adhesin ISU55_08700 PF13018 Extended Signal Peptide of Type V secretion system ISU55_08700 PF03895 YadA-like membrane anchor domain ISU55_08700 PF05658 Head domain of trimeric autotransporter adhesin ISU55_08700 PF05662 Coiled stalk of trimeric autotransporter adhesin ISU55_08710 PF01168 Alanine racemase, N-terminal domain ISU55_08710 PF00842 Alanine racemase, C-terminal domain ISU55_08735 PF01695 IstB-like ATP binding protein ISU55_08740 PF00665 Integrase core domain ISU55_08740 PF02796 Helix-turn-helix domain of resolvase ISU55_08750 PF07351 Protein of unknown function (DUF1480) ISU55_08765 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain ISU55_08765 PF02753 Pili assembly chaperone PapD, C-terminal domain ISU55_08785 PF02470 MlaD protein ISU55_08790 PF04403 Paraquat-inducible protein A ISU55_08795 PF13185 GAF domain ISU55_08800 PF04352 ProQ/FINO family ISU55_08800 PF17516 ProQ C-terminal domain ISU55_08805 PF17804 Tail specific protease N-terminal domain ISU55_08805 PF11818 C-terminal domain of tail specific protease (DUF3340) ISU55_08805 PF00595 PDZ domain ISU55_08805 PF03572 Peptidase family S41 ISU55_08810 PF01435 Peptidase family M48 ISU55_08815 PF00419 Fimbrial protein ISU55_08820 PF02753 Pili assembly chaperone PapD, C-terminal domain ISU55_08820 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain ISU55_08825 PF13954 PapC N-terminal domain ISU55_08825 PF13953 PapC C-terminal domain ISU55_08825 PF00577 Outer membrane usher protein ISU55_08835 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain ISU55_08835 PF02753 Pili assembly chaperone PapD, C-terminal domain ISU55_08840 PF07690 Major Facilitator Superfamily ISU55_08845 PF14583 Oligogalacturonate lyase ISU55_08850 PF09339 IclR helix-turn-helix domain ISU55_08850 PF01614 Bacterial transcriptional regulator ISU55_08855 PF01510 N-acetylmuramoyl-L-alanine amidase ISU55_08860 PF00375 Sodium:dicarboxylate symporter family ISU55_08865 PF04307 LexA-binding, inner membrane-associated putative hydrolase ISU55_08870 PF06178 Oligogalacturonate-specific porin protein (KdgM) ISU55_08875 PF01547 Bacterial extracellular solute-binding protein ISU55_08880 PF03459 TOBE domain ISU55_08880 PF17912 MalK OB fold domain ISU55_08880 PF00005 ABC transporter ISU55_08885 PF00528 Binding-protein-dependent transport system inner membrane component ISU55_08890 PF00528 Binding-protein-dependent transport system inner membrane component ISU55_08895 PF06917 Periplasmic pectate lyase ISU55_08905 PF04962 KduI/IolB family ISU55_08910 PF07883 Cupin domain ISU55_08915 PF00872 Transposase, Mutator family ISU55_08920 PF13419 Haloacid dehalogenase-like hydrolase ISU55_08925 PF14002 YniB-like protein ISU55_08930 PF03881 Fructosamine kinase ISU55_08940 PF00950 ABC 3 transport family ISU55_08945 PF00950 ABC 3 transport family ISU55_08950 PF00005 ABC transporter ISU55_08955 PF01297 Zinc-uptake complex component A periplasmic ISU55_08960 PF01464 Transglycosylase SLT domain ISU55_08965 PF01914 MarC family integral membrane protein ISU55_08975 PF13619 KTSC domain ISU55_08980 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) ISU55_08980 PF02824 TGS domain ISU55_08980 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain ISU55_08980 PF03129 Anticodon binding domain ISU55_08985 PF05198 Translation initiation factor IF-3, N-terminal domain ISU55_08985 PF00707 Translation initiation factor IF-3, C-terminal domain ISU55_08990 PF01632 Ribosomal protein L35 ISU55_08995 PF00453 Ribosomal protein L20 ISU55_09005 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain ISU55_09005 PF01409 tRNA synthetases class II core domain (F) ISU55_09010 PF01588 Putative tRNA binding domain ISU55_09010 PF03147 Ferredoxin-fold anticodon binding domain ISU55_09010 PF03484 tRNA synthetase B5 domain ISU55_09010 PF03483 B3/4 domain ISU55_09010 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain ISU55_09015 PF00216 Bacterial DNA-binding protein ISU55_09025 PF01032 FecCD transport family ISU55_09030 PF00255 Glutathione peroxidase ISU55_09035 PF00005 ABC transporter ISU55_09040 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family ISU55_09045 PF00535 Glycosyl transferase family 2 ISU55_09050 PF00551 Formyl transferase ISU55_09050 PF02911 Formyl transferase, C-terminal domain ISU55_09050 PF01370 NAD dependent epimerase/dehydratase family ISU55_09055 PF01522 Polysaccharide deacetylase ISU55_09060 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase ISU55_09065 PF00892 EamA-like transporter family ISU55_09080 PF00877 NlpC/P60 family ISU55_09085 PF03099 Biotin/lipoate A/B protein ligase family ISU55_09085 PF10437 Bacterial lipoate protein ligase C-terminus ISU55_09095 PF00793 DAHP synthetase I family ISU55_09100 PF03618 Kinase/pyrophosphorylase ISU55_09105 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain ISU55_09105 PF02896 PEP-utilising enzyme, TIM barrel domain ISU55_09105 PF00391 PEP-utilising enzyme, mobile domain ISU55_09115 PF01594 AI-2E family transporter ISU55_09120 PF01565 FAD binding domain ISU55_09120 PF13183 4Fe-4S dicluster domain ISU55_09120 PF02913 FAD linked oxidases, C-terminal domain ISU55_09125 PF03061 Thioesterase superfamily ISU55_09130 PF01521 Iron-sulphur cluster biosynthesis ISU55_09135 PF01458 Uncharacterized protein family (UPF0051) ISU55_09140 PF00005 ABC transporter ISU55_09145 PF01458 Uncharacterized protein family (UPF0051) ISU55_09150 PF00266 Aminotransferase class-V ISU55_09155 PF02657 Fe-S metabolism associated domain ISU55_09160 PF03734 L,D-transpeptidase catalytic domain ISU55_09160 PF01476 LysM domain ISU55_09160 PF17969 L,D-transpeptidase C-terminal domain ISU55_09170 PF01695 IstB-like ATP binding protein ISU55_09175 PF00665 Integrase core domain ISU55_09175 PF02796 Helix-turn-helix domain of resolvase ISU55_09180 PF01797 Transposase IS200 like ISU55_09185 PF04728 Lipoprotein leucine-zipper ISU55_09190 PF02887 Pyruvate kinase, alpha/beta domain ISU55_09190 PF00224 Pyruvate kinase, barrel domain ISU55_09205 PF01554 MatE ISU55_09215 PF00677 Lumazine binding domain ISU55_09225 PF07690 Major Facilitator Superfamily ISU55_09230 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ISU55_09230 PF03466 LysR substrate binding domain ISU55_09235 PF00356 Bacterial regulatory proteins, lacI family ISU55_09245 PF02777 Iron/manganese superoxide dismutases, C-terminal domain ISU55_09245 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain ISU55_09250 PF00877 NlpC/P60 family ISU55_09255 PF00462 Glutaredoxin ISU55_09265 PF00929 Exonuclease ISU55_09270 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily ISU55_09280 PF00440 Bacterial regulatory proteins, tetR family ISU55_09280 PF16925 Tetracyclin repressor-like, C-terminal domain ISU55_09285 PF00884 Sulfatase ISU55_09285 PF08019 Phosphoethanolamine transferase EptA/EptB ISU55_09290 PF01047 MarR family ISU55_09295 PF05433 Glycine zipper 2TM domain ISU55_09300 PF03702 Anhydro-N-acetylmuramic acid kinase ISU55_09305 PF09864 Membrane-bound lysozyme-inhibitor of c-type lysozyme ISU55_09310 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region ISU55_09310 PF01243 Pyridoxamine 5'-phosphate oxidase ISU55_09315 PF00579 tRNA synthetases class I (W and Y) ISU55_09315 PF01479 S4 domain ISU55_09320 PF08543 Phosphomethylpyrimidine kinase ISU55_09325 PF00043 Glutathione S-transferase, C-terminal domain ISU55_09325 PF02798 Glutathione S-transferase, N-terminal domain ISU55_09330 PF11656 YjbD family (DUF3811) ISU55_09335 PF04893 Yip1 domain ISU55_09340 PF00854 POT family ISU55_09350 PF00005 ABC transporter ISU55_09355 PF08352 Oligopeptide/dipeptide transporter, C-terminal region ISU55_09355 PF00005 ABC transporter ISU55_09360 PF00528 Binding-protein-dependent transport system inner membrane component ISU55_09360 PF12911 N-terminal TM domain of oligopeptide transport permease C ISU55_09365 PF00528 Binding-protein-dependent transport system inner membrane component ISU55_09370 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle ISU55_09375 PF01797 Transposase IS200 like ISU55_09380 PF00158 Sigma-54 interaction domain ISU55_09380 PF02954 Bacterial regulatory protein, Fis family ISU55_09385 PF04012 PspA/IM30 family ISU55_09390 PF06667 Phage shock protein B ISU55_09395 PF04024 PspC domain ISU55_09405 PF04317 YcjX-like family, DUF463 ISU55_09410 PF05128 Domain of unknown function (DUF697) ISU55_09415 PF08808 RES domain ISU55_09420 PF09722 Protein of unknown function (DUF2384) ISU55_09425 PF00158 Sigma-54 interaction domain ISU55_09425 PF18024 Helix-turn-helix domain ISU55_09435 PF02796 Helix-turn-helix domain of resolvase ISU55_09435 PF00665 Integrase core domain ISU55_09440 PF01695 IstB-like ATP binding protein ISU55_09445 PF01797 Transposase IS200 like ISU55_09450 PF08534 Redoxin ISU55_09455 PF13378 Enolase C-terminal domain-like ISU55_09455 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain ISU55_09460 PF00246 Zinc carboxypeptidase ISU55_09465 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle ISU55_09470 PF01544 CorA-like Mg2+ transporter protein ISU55_09480 PF07859 alpha/beta hydrolase fold ISU55_09485 PF01171 PP-loop family ISU55_09490 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg ISU55_09490 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase ISU55_09490 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II ISU55_09490 PF10371 Domain of unknown function ISU55_09490 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain ISU55_09495 PF00893 Small Multidrug Resistance protein ISU55_09500 PF02308 MgtC family ISU55_09505 PF03891 Domain of unknown function (DUF333) ISU55_09510 PF03724 META domain ISU55_09515 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ISU55_09515 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain ISU55_09520 PF11739 Dicarboxylate transport ISU55_09525 PF13617 YnbE-like lipoprotein ISU55_09530 PF07027 Protein of unknown function (DUF1318) ISU55_09535 PF01232 Mannitol dehydrogenase Rossmann domain ISU55_09535 PF08125 Mannitol dehydrogenase C-terminal domain ISU55_09540 PF00325 Bacterial regulatory proteins, crp family ISU55_09540 PF04198 Putative sugar-binding domain ISU55_09545 PF02525 Flavodoxin-like fold ISU55_09550 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold ISU55_09550 PF00271 Helicase conserved C-terminal domain ISU55_09550 PF04408 Helicase associated domain (HA2) ISU55_09550 PF11898 Domain of unknown function (DUF3418) ISU55_09550 PF00270 DEAD/DEAH box helicase ISU55_09565 PF00089 Trypsin ISU55_09595 PF01695 IstB-like ATP binding protein ISU55_09600 PF02796 Helix-turn-helix domain of resolvase ISU55_09600 PF00665 Integrase core domain ISU55_09605 PF00171 Aldehyde dehydrogenase family ISU55_09605 PF00465 Iron-containing alcohol dehydrogenase ISU55_09610 PF01914 MarC family integral membrane protein ISU55_09615 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle ISU55_09620 PF00528 Binding-protein-dependent transport system inner membrane component ISU55_09625 PF12911 N-terminal TM domain of oligopeptide transport permease C ISU55_09625 PF00528 Binding-protein-dependent transport system inner membrane component ISU55_09630 PF00005 ABC transporter ISU55_09630 PF08352 Oligopeptide/dipeptide transporter, C-terminal region ISU55_09635 PF08352 Oligopeptide/dipeptide transporter, C-terminal region ISU55_09635 PF00005 ABC transporter ISU55_09645 PF04269 Protein of unknown function, DUF440 ISU55_09650 PF13091 PLD-like domain ISU55_09650 PF13396 Phospholipase_D-nuclease N-terminal ISU55_09665 PF13505 Outer membrane protein beta-barrel domain ISU55_09680 PF03795 YCII-related domain ISU55_09685 PF03544 Gram-negative bacterial TonB protein C-terminal ISU55_09690 PF00872 Transposase, Mutator family ISU55_09695 PF03061 Thioesterase superfamily ISU55_09700 PF04279 Intracellular septation protein A ISU55_09725 PF03922 OmpW family ISU55_09735 PF00290 Tryptophan synthase alpha chain ISU55_09740 PF00291 Pyridoxal-phosphate dependent enzyme ISU55_09745 PF00218 Indole-3-glycerol phosphate synthase ISU55_09745 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase ISU55_09750 PF02885 Glycosyl transferase family, helical bundle domain ISU55_09750 PF00591 Glycosyl transferase family, a/b domain ISU55_09755 PF00117 Glutamine amidotransferase class-I ISU55_09760 PF04715 Anthranilate synthase component I, N terminal region ISU55_09760 PF00425 chorismate binding enzyme ISU55_09770 PF02811 PHP domain ISU55_09775 PF01300 Telomere recombination ISU55_09780 PF00849 RNA pseudouridylate synthase ISU55_09780 PF01479 S4 domain ISU55_09785 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP ISU55_09790 PF00106 short chain dehydrogenase ISU55_09795 PF08496 Peptidase family S49 N-terminal ISU55_09795 PF01343 Peptidase family S49 ISU55_09800 PF10692 Protein of unknown function (DUF2498) ISU55_09810 PF08272 Topoisomerase I zinc-ribbon-like ISU55_09810 PF01131 DNA topoisomerase ISU55_09810 PF01751 Toprim domain ISU55_09810 PF01396 Topoisomerase DNA binding C4 zinc finger ISU55_09815 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ISU55_09815 PF03466 LysR substrate binding domain ISU55_09825 PF00694 Aconitase C-terminal domain ISU55_09825 PF00330 Aconitase family (aconitate hydratase) ISU55_09830 PF00925 GTP cyclohydrolase II ISU55_09835 PF01569 PAP2 superfamily ISU55_09840 PF06305 Lipopolysaccharide assembly protein A domain ISU55_09845 PF18073 Rubredoxin metal binding domain ISU55_09855 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family ISU55_09860 PF01253 Translation initiation factor SUI1 ISU55_09865 PF05433 Glycine zipper 2TM domain ISU55_09870 PF00596 Class II Aldolase and Adducin N-terminal domain ISU55_09880 PF00923 Transaldolase/Fructose-6-phosphate aldolase ISU55_09885 PF04328 Selenoprotein, putative ISU55_09890 PF02554 Carbon starvation protein CstA ISU55_09890 PF13722 5TM C-terminal transporter carbon starvation CstA ISU55_09895 PF08206 Ribonuclease B OB domain ISU55_09895 PF17876 Cold shock domain ISU55_09895 PF00773 RNB domain ISU55_09895 PF00575 S1 RNA binding domain ISU55_09900 PF07690 Major Facilitator Superfamily ISU55_09905 PF01370 NAD dependent epimerase/dehydratase family ISU55_09910 PF00633 Helix-hairpin-helix motif ISU55_09910 PF00730 HhH-GPD superfamily base excision DNA repair protein ISU55_09910 PF10576 Iron-sulfur binding domain of endonuclease III ISU55_09915 PF02508 Rnf-Nqr subunit, membrane protein ISU55_09920 PF04205 FMN-binding domain ISU55_09925 PF03116 NQR2, RnfD, RnfE family ISU55_09930 PF06445 GyrI-like small molecule binding domain ISU55_09930 PF12833 Helix-turn-helix domain ISU55_09935 PF13237 4Fe-4S dicluster domain ISU55_09935 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit ISU55_09935 PF10531 SLBB domain ISU55_09935 PF13375 RnfC Barrel sandwich hybrid domain ISU55_09940 PF04060 Putative Fe-S cluster ISU55_09945 PF02508 Rnf-Nqr subunit, membrane protein ISU55_09950 PF10754 Protein of unknown function (DUF2569) ISU55_09955 PF03412 Peptidase C39 family ISU55_09955 PF00664 ABC transporter transmembrane region ISU55_09955 PF00005 ABC transporter ISU55_09960 PF00664 ABC transporter transmembrane region ISU55_09960 PF00005 ABC transporter ISU55_09965 PF13533 Biotin-lipoyl like ISU55_09975 PF00005 ABC transporter ISU55_09975 PF03412 Peptidase C39 family ISU55_09975 PF00664 ABC transporter transmembrane region ISU55_09980 PF02610 L-arabinose isomerase ISU55_09980 PF11762 L-arabinose isomerase C-terminal domain ISU55_09985 PF02782 FGGY family of carbohydrate kinases, C-terminal domain ISU55_09990 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family ISU55_09995 PF00005 ABC transporter ISU55_10000 PF02653 Branched-chain amino acid transport system / permease component ISU55_10005 PF12833 Helix-turn-helix domain ISU55_10005 PF02311 AraC-like ligand binding domain ISU55_10010 PF02894 Oxidoreductase family, C-terminal alpha/beta domain ISU55_10010 PF01408 Oxidoreductase family, NAD-binding Rossmann fold ISU55_10015 PF13593 SBF-like CPA transporter family (DUF4137) ISU55_10025 PF06097 Bacterial protein of unknown function (DUF945) ISU55_10030 PF01238 Phosphomannose isomerase type I ISU55_10035 PF00206 Lyase ISU55_10035 PF10415 Fumarase C C-terminus ISU55_10040 PF05472 DNA replication terminus site-binding protein (Ter protein) ISU55_10045 PF07690 Major Facilitator Superfamily ISU55_10050 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ISU55_10050 PF03466 LysR substrate binding domain ISU55_10055 PF00480 ROK family ISU55_10065 PF00654 Voltage gated chloride channel ISU55_10070 PF00356 Bacterial regulatory proteins, lacI family ISU55_10085 PF09084 NMT1/THI5 like ISU55_10090 PF00528 Binding-protein-dependent transport system inner membrane component ISU55_10095 PF00005 ABC transporter ISU55_10100 PF10423 Bacterial AMP nucleoside phosphorylase N-terminus ISU55_10100 PF01048 Phosphorylase superfamily ISU55_10130 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain ISU55_10130 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain ISU55_10130 PF00205 Thiamine pyrophosphate enzyme, central domain ISU55_10135 PF01842 ACT domain ISU55_10140 PF13419 Haloacid dehalogenase-like hydrolase ISU55_10150 PF00245 Alkaline phosphatase ISU55_10155 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain ISU55_10155 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain ISU55_10160 PF13545 Crp-like helix-turn-helix domain ISU55_10160 PF00027 Cyclic nucleotide-binding domain ISU55_10165 PF00582 Universal stress protein family ISU55_10170 PF02233 NAD(P) transhydrogenase beta subunit ISU55_10175 PF01262 Alanine dehydrogenase/PNT, C-terminal domain ISU55_10175 PF05222 Alanine dehydrogenase/PNT, N-terminal domain ISU55_10175 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch ISU55_10180 PF07338 Protein of unknown function (DUF1471) ISU55_10185 PF13520 Amino acid permease ISU55_10195 PF00486 Transcriptional regulatory protein, C terminal ISU55_10195 PF00072 Response regulator receiver domain ISU55_10200 PF00512 His Kinase A (phospho-acceptor) domain ISU55_10200 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ISU55_10200 PF00672 HAMP domain ISU55_10205 PF02074 Carboxypeptidase Taq (M32) metallopeptidase ISU55_10210 PF01797 Transposase IS200 like ISU55_10215 PF00665 Integrase core domain ISU55_10215 PF02796 Helix-turn-helix domain of resolvase ISU55_10220 PF01695 IstB-like ATP binding protein ISU55_10225 PF00265 Thymidine kinase ISU55_10230 PF00816 H-NS histone family ISU55_10235 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain ISU55_10235 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain ISU55_10235 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain ISU55_10240 PF00072 Response regulator receiver domain ISU55_10245 PF02810 SEC-C motif ISU55_10250 PF01842 ACT domain ISU55_10250 PF00551 Formyl transferase ISU55_10255 PF00872 Transposase, Mutator family ISU55_10275 PF03466 LysR substrate binding domain ISU55_10275 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ISU55_10280 PF03372 Endonuclease/Exonuclease/phosphatase family ISU55_10285 PF00293 NUDIX domain ISU55_10290 PF07383 Protein of unknown function (DUF1496) ISU55_10295 PF01131 DNA topoisomerase ISU55_10295 PF01751 Toprim domain ISU55_10300 PF02769 AIR synthase related protein, C-terminal domain ISU55_10300 PF00586 AIR synthase related protein, N-terminal domain ISU55_10305 PF00881 Nitroreductase family ISU55_10310 PF01343 Peptidase family S49 ISU55_10315 PF00710 Asparaginase, N-terminal ISU55_10315 PF17763 Glutaminase/Asparaginase C-terminal domain ISU55_10320 PF00857 Isochorismatase family ISU55_10325 PF07023 Protein of unknown function (DUF1315) ISU55_10330 PF01641 SelR domain ISU55_10335 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain ISU55_10335 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain ISU55_10340 PF01263 Aldose 1-epimerase ISU55_10345 PF06629 MltA-interacting protein MipA ISU55_10350 PF08298 PrkA AAA domain ISU55_10350 PF06798 PrkA serine protein kinase C-terminal domain ISU55_10355 PF04285 Protein of unknown function (DUF444) ISU55_10365 PF03466 LysR substrate binding domain ISU55_10365 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ISU55_10370 PF02678 Pirin ISU55_10370 PF05726 Pirin C-terminal cupin domain ISU55_10375 PF07690 Major Facilitator Superfamily ISU55_10380 PF01266 FAD dependent oxidoreductase ISU55_10385 PF04293 SpoVR like protein ISU55_10390 PF00392 Bacterial regulatory proteins, gntR family ISU55_10390 PF07840 FadR C-terminal domain ISU55_10395 PF06450 Bacterial Na+/H+ antiporter B (NhaB) ISU55_10400 PF02600 Disulfide bond formation protein DsbB ISU55_10415 PF00266 Aminotransferase class-V ISU55_10425 PF00872 Transposase, Mutator family ISU55_10430 PF02413 Caudovirales tail fibre assembly protein, lambda gpK ISU55_10585 PF00872 Transposase, Mutator family ISU55_10650 PF06530 Phage antitermination protein Q ISU55_10660 PF05772 NinB protein ISU55_10675 PF01695 IstB-like ATP binding protein ISU55_10680 PF02796 Helix-turn-helix domain of resolvase ISU55_10680 PF00665 Integrase core domain ISU55_10685 PF12167 Arm DNA-binding domain ISU55_10685 PF00589 Phage integrase family ISU55_10690 PF03692 Putative zinc- or iron-chelating domain ISU55_10695 PF01557 Fumarylacetoacetate (FAA) hydrolase family ISU55_10700 PF13406 Transglycosylase SLT domain ISU55_10705 PF05166 YcgL domain ISU55_10710 PF05209 Septum formation inhibitor MinC, N-terminal domain ISU55_10710 PF03775 Septum formation inhibitor MinC, C-terminal domain ISU55_10715 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain ISU55_10720 PF03776 Septum formation topological specificity factor MinE ISU55_10725 PF01612 3'-5' exonuclease ISU55_10725 PF00570 HRDC domain ISU55_10730 PF13193 AMP-binding enzyme C-terminal domain ISU55_10730 PF00501 AMP-binding enzyme ISU55_10740 PF03843 Outer membrane lipoprotein Slp family ISU55_10745 PF00814 Glycoprotease family ISU55_10750 PF04851 Type III restriction enzyme, res subunit ISU55_10750 PF13307 Helicase C-terminal domain ISU55_10755 PF01042 Endoribonuclease L-PSP ISU55_10760 PF00893 Small Multidrug Resistance protein ISU55_10765 PF00893 Small Multidrug Resistance protein ISU55_10770 PF01081 KDPG and KHG aldolase ISU55_10775 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain ISU55_10775 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain ISU55_10780 PF01380 SIS domain ISU55_10780 PF01418 Helix-turn-helix domain, rpiR family ISU55_10785 PF02887 Pyruvate kinase, alpha/beta domain ISU55_10785 PF00224 Pyruvate kinase, barrel domain ISU55_10795 PF03279 Bacterial lipid A biosynthesis acyltransferase ISU55_10800 PF01476 LysM domain ISU55_10800 PF08525 Opacity-associated protein A N-terminal motif ISU55_10800 PF01551 Peptidase family M23 ISU55_10805 PF01297 Zinc-uptake complex component A periplasmic ISU55_10810 PF00005 ABC transporter ISU55_10815 PF00950 ABC 3 transport family ISU55_10820 PF05491 RuvB C-terminal winged helix domain ISU55_10820 PF05496 Holliday junction DNA helicase RuvB P-loop domain ISU55_10820 PF17864 RuvB AAA lid domain ISU55_10825 PF01330 RuvA N terminal domain ISU55_10825 PF07499 RuvA, C-terminal domain ISU55_10830 PF02075 Crossover junction endodeoxyribonuclease RuvC ISU55_10835 PF01709 Transcriptional regulator ISU55_10840 PF00293 NUDIX domain ISU55_10845 PF01336 OB-fold nucleic acid binding domain ISU55_10845 PF00152 tRNA synthetases class II (D, K and N) ISU55_10845 PF02938 GAD domain ISU55_10850 PF01904 Protein of unknown function DUF72 ISU55_10855 PF01124 MAPEG family ISU55_10860 PF13649 Methyltransferase domain ISU55_10865 PF08003 Protein of unknown function (DUF1698) ISU55_10870 PF03932 CutC family ISU55_10875 PF06185 YecM protein ISU55_10880 PF03485 Arginyl tRNA synthetase N terminal domain ISU55_10880 PF05746 DALR anticodon binding domain ISU55_10880 PF00750 tRNA synthetases class I (R) ISU55_10885 PF05860 haemagglutination activity domain ISU55_10885 PF13332 Hemagglutinin repeat ISU55_10890 PF08479 POTRA domain, ShlB-type ISU55_10890 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB ISU55_10890 PF17287 POTRA domain ISU55_10895 PF03023 Lipid II flippase MurJ ISU55_10900 PF04337 Protein of unknown function, DUF480 ISU55_10905 PF13302 Acetyltransferase (GNAT) domain ISU55_10910 PF07690 Major Facilitator Superfamily ISU55_10915 PF07273 Protein of unknown function (DUF1439) ISU55_10920 PF02613 Nitrate reductase delta subunit ISU55_10925 PF02811 PHP domain ISU55_10935 PF01325 Iron dependent repressor, N-terminal DNA binding domain ISU55_10935 PF00480 ROK family ISU55_10940 PF03009 Glycerophosphoryl diester phosphodiesterase family ISU55_10950 PF01797 Transposase IS200 like ISU55_10955 PF08402 TOBE domain ISU55_10955 PF00005 ABC transporter ISU55_10960 PF00528 Binding-protein-dependent transport system inner membrane component ISU55_10965 PF00528 Binding-protein-dependent transport system inner membrane component ISU55_10975 PF03009 Glycerophosphoryl diester phosphodiesterase family ISU55_10985 PF01740 STAS domain ISU55_10985 PF00916 Sulfate permease family ISU55_10990 PF00793 DAHP synthetase I family ISU55_10995 PF13369 Transglutaminase-like superfamily ISU55_11000 PF04247 Invasion gene expression up-regulator, SirB ISU55_11005 PF17827 PrmC N-terminal domain ISU55_11005 PF13847 Methyltransferase domain ISU55_11010 PF00472 RF-1 domain ISU55_11010 PF03462 PCRF domain ISU55_11015 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain ISU55_11015 PF01488 Shikimate / quinate 5-dehydrogenase ISU55_11015 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain ISU55_11020 PF03550 Outer membrane lipoprotein LolB ISU55_11025 PF08544 GHMP kinases C terminal ISU55_11025 PF00288 GHMP kinases N terminal domain ISU55_11030 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase ISU55_11030 PF14572 Phosphoribosyl synthetase-associated domain ISU55_11035 PF10762 Protein of unknown function (DUF2583) ISU55_11040 PF01195 Peptidyl-tRNA hydrolase ISU55_11045 PF01926 50S ribosome-binding GTPase ISU55_11045 PF06071 Protein of unknown function (DUF933) ISU55_11085 PF02129 X-Pro dipeptidyl-peptidase (S15 family) ISU55_11090 PF00486 Transcriptional regulatory protein, C terminal ISU55_11090 PF00072 Response regulator receiver domain ISU55_11095 PF00672 HAMP domain ISU55_11095 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ISU55_11095 PF00512 His Kinase A (phospho-acceptor) domain ISU55_11140 PF08242 Methyltransferase domain ISU55_11160 PF00872 Transposase, Mutator family ISU55_11205 PF01370 NAD dependent epimerase/dehydratase family ISU55_11210 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III ISU55_11210 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal ISU55_11215 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III ISU55_11215 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal ISU55_11225 PF05962 HutD ISU55_11230 PF01979 Amidohydrolase family ISU55_11235 PF07702 UTRA domain ISU55_11235 PF00392 Bacterial regulatory proteins, gntR family ISU55_11240 PF01979 Amidohydrolase family ISU55_11255 PF01695 IstB-like ATP binding protein ISU55_11260 PF00665 Integrase core domain ISU55_11260 PF02796 Helix-turn-helix domain of resolvase ISU55_11280 PF00005 ABC transporter ISU55_11280 PF08402 TOBE domain ISU55_11285 PF00528 Binding-protein-dependent transport system inner membrane component ISU55_11290 PF00528 Binding-protein-dependent transport system inner membrane component ISU55_11300 PF02894 Oxidoreductase family, C-terminal alpha/beta domain ISU55_11300 PF01408 Oxidoreductase family, NAD-binding Rossmann fold ISU55_11305 PF07702 UTRA domain ISU55_11305 PF00392 Bacterial regulatory proteins, gntR family ISU55_11375 PF05638 Type VI secretion system effector, Hcp ISU55_11420 PF01066 CDP-alcohol phosphatidyltransferase ISU55_11425 PF02151 UvrB/uvrC motif ISU55_11425 PF01541 GIY-YIG catalytic domain ISU55_11425 PF08459 UvrC Helix-hairpin-helix N-terminal ISU55_11430 PF00072 Response regulator receiver domain ISU55_11430 PF00196 Bacterial regulatory proteins, luxR family ISU55_11435 PF10769 Protein of unknown function (DUF2594) ISU55_11440 PF06942 GlpM protein ISU55_11450 PF13505 Outer membrane protein beta-barrel domain ISU55_11460 PF00324 Amino acid permease ISU55_11465 PF01344 Kelch motif ISU55_11470 PF03358 NADPH-dependent FMN reductase ISU55_11475 PF04261 Dyp-type peroxidase family ISU55_11480 PF13473 Cupredoxin-like domain ISU55_11480 PF09375 Imelysin ISU55_11485 PF03239 Iron permease FTR1 family ISU55_11490 PF00474 Sodium:solute symporter family ISU55_11500 PF18327 Proline utilization A proline dehydrogenase N-terminal domain ISU55_11500 PF01619 Proline dehydrogenase ISU55_11500 PF14850 DNA-binding domain of Proline dehydrogenase ISU55_11500 PF00171 Aldehyde dehydrogenase family ISU55_11515 PF00005 ABC transporter ISU55_11520 PF00528 Binding-protein-dependent transport system inner membrane component ISU55_11525 PF00497 Bacterial extracellular solute-binding proteins, family 3 ISU55_11530 PF00291 Pyridoxal-phosphate dependent enzyme ISU55_11535 PF02899 Phage integrase, N-terminal SAM-like domain ISU55_11540 PF04545 Sigma-70, region 4 ISU55_11540 PF04542 Sigma-70 region 2 ISU55_11540 PF04539 Sigma-70 region 3 ISU55_11545 PF00700 Bacterial flagellin C-terminal helical region ISU55_11545 PF08884 Flagellin D3 domain ISU55_11545 PF00669 Bacterial flagellin N-terminal helical region ISU55_11550 PF07195 Flagellar hook-associated protein 2 C-terminus ISU55_11550 PF07196 Flagellin hook IN motif ISU55_11550 PF02465 Flagellar hook-associated protein 2 N-terminus ISU55_11555 PF02561 Flagellar protein FliS ISU55_11560 PF05400 Flagellar protein FliT ISU55_11565 PF12833 Helix-turn-helix domain ISU55_11570 PF00672 HAMP domain ISU55_11570 PF00211 Adenylate and Guanylate cyclase catalytic domain ISU55_11570 PF02743 Cache domain ISU55_11575 PF01966 HD domain ISU55_11580 PF00730 HhH-GPD superfamily base excision DNA repair protein ISU55_11600 PF02049 Flagellar hook-basal body complex protein FliE ISU55_11605 PF01514 Secretory protein of YscJ/FliF family ISU55_11605 PF08345 Flagellar M-ring protein C-terminal ISU55_11610 PF14842 FliG N-terminal domain ISU55_11610 PF01706 FliG C-terminal domain ISU55_11610 PF14841 FliG middle domain ISU55_11615 PF02108 Flagellar assembly protein FliH ISU55_11620 PF18269 T3SS EscN ATPase C-terminal domain ISU55_11620 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain ISU55_11625 PF02050 Flagellar FliJ protein ISU55_11630 PF02120 Flagellar hook-length control protein FliK ISU55_11635 PF03748 Flagellar basal body-associated protein FliL ISU55_11640 PF02154 Flagellar motor switch protein FliM ISU55_11640 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term ISU55_11645 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term ISU55_11645 PF16973 Flagellar motor switch protein FliN N-terminal ISU55_11650 PF04347 Flagellar biosynthesis protein, FliO ISU55_11655 PF00813 FliP family ISU55_11660 PF01313 Bacterial export proteins, family 3 ISU55_11665 PF01311 Bacterial export proteins, family 1 ISU55_11680 PF00294 pfkB family carbohydrate kinase ISU55_11685 PF02653 Branched-chain amino acid transport system / permease component ISU55_11690 PF00005 ABC transporter ISU55_11695 PF13407 Periplasmic binding protein domain ISU55_11700 PF02653 Branched-chain amino acid transport system / permease component ISU55_11705 PF00596 Class II Aldolase and Adducin N-terminal domain ISU55_11710 PF04198 Putative sugar-binding domain ISU55_11715 PF00669 Bacterial flagellin N-terminal helical region ISU55_11720 PF06429 Flagellar basal body rod FlgEFG protein C-terminal ISU55_11720 PF00460 Flagella basal body rod protein ISU55_11725 PF10135 Rod binding protein ISU55_11725 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase ISU55_11730 PF02119 Flagellar P-ring protein ISU55_11735 PF02107 Flagellar L-ring protein ISU55_11750 PF07559 Flagellar basal body protein FlaE ISU55_11750 PF00460 Flagella basal body rod protein ISU55_11750 PF06429 Flagellar basal body rod FlgEFG protein C-terminal ISU55_11755 PF03963 Flagellar hook capping protein - N-terminal region ISU55_11755 PF13860 FlgD Ig-like domain ISU55_11755 PF13861 FlgD Tudor-like domain ISU55_11760 PF00460 Flagella basal body rod protein ISU55_11760 PF06429 Flagellar basal body rod FlgEFG protein C-terminal ISU55_11765 PF00460 Flagella basal body rod protein ISU55_11770 PF13144 Chaperone for flagella basal body P-ring formation ISU55_11770 PF17656 FlgA N-terminal domain ISU55_11775 PF04316 Anti-sigma-28 factor, FlgM ISU55_11780 PF05130 FlgN protein ISU55_11790 PF01797 Transposase IS200 like ISU55_11800 PF06366 Flagellar protein FlhE ISU55_11805 PF00771 FHIPEP family ISU55_11810 PF01312 FlhB HrpN YscU SpaS Family ISU55_11825 PF10709 Protein of unknown function (DUF2511) ISU55_11835 PF04234 CopC domain ISU55_11840 PF00210 Ferritin-like domain ISU55_11845 PF06440 DNA polymerase III, theta subunit ISU55_11850 PF00561 alpha/beta hydrolase fold ISU55_11855 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain ISU55_11855 PF00326 Prolyl oligopeptidase family ISU55_11860 PF13995 YebF-like protein ISU55_11865 PF04266 ASCH domain ISU55_11870 PF07130 YebG protein ISU55_11875 PF00271 Helicase conserved C-terminal domain ISU55_11875 PF00270 DEAD/DEAH box helicase ISU55_11875 PF03880 DbpA RNA binding domain ISU55_11880 PF02222 ATP-grasp domain ISU55_11885 PF03701 Uncharacterised protein family (UPF0181) ISU55_11890 PF04715 Anthranilate synthase component I, N terminal region ISU55_11890 PF00425 chorismate binding enzyme ISU55_11895 PF00293 NUDIX domain ISU55_11900 PF03315 Serine dehydratase beta chain ISU55_11900 PF03313 Serine dehydratase alpha chain ISU55_11905 PF01613 Flavin reductase like domain ISU55_11910 PF11794 4-hydroxyphenylacetate 3-hydroxylase N terminal ISU55_11910 PF03241 4-hydroxyphenylacetate 3-hydroxylase C terminal ISU55_11915 PF07690 Major Facilitator Superfamily ISU55_11920 PF03328 HpcH/HpaI aldolase/citrate lyase family ISU55_11925 PF01557 Fumarylacetoacetate (FAA) hydrolase family ISU55_11930 PF02962 5-carboxymethyl-2-hydroxymuconate isomerase ISU55_11935 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase ISU55_11940 PF00171 Aldehyde dehydrogenase family ISU55_11945 PF01557 Fumarylacetoacetate (FAA) hydrolase family ISU55_11950 PF01557 Fumarylacetoacetate (FAA) hydrolase family ISU55_11955 PF01047 MarR family ISU55_11960 PF03471 Transporter associated domain ISU55_11960 PF03741 Integral membrane protein TerC family ISU55_11965 PF03830 PTS system sorbose subfamily IIB component ISU55_11965 PF03610 PTS system fructose IIA component ISU55_11970 PF03609 PTS system sorbose-specific iic component ISU55_11975 PF03613 PTS system mannose/fructose/sorbose family IID component ISU55_11980 PF06173 Protein of unknown function (DUF986) ISU55_11990 PF00665 Integrase core domain ISU55_11990 PF02796 Helix-turn-helix domain of resolvase ISU55_11995 PF01695 IstB-like ATP binding protein ISU55_12000 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family ISU55_12000 PF00356 Bacterial regulatory proteins, lacI family ISU55_12010 PF06167 Glucose-regulated metallo-peptidase M90 ISU55_12025 PF00664 ABC transporter transmembrane region ISU55_12025 PF00005 ABC transporter ISU55_12035 PF12833 Helix-turn-helix domain ISU55_12040 PF10964 Protein of unknown function (DUF2766) ISU55_12045 PF13996 YobH-like protein ISU55_12050 PF13998 MgrB protein ISU55_12055 PF13974 YebO-like protein ISU55_12070 PF00324 Amino acid permease ISU55_12075 PF07017 Antimicrobial peptide resistance and lipid A acylation protein PagP ISU55_12080 PF10736 Protein of unknown function (DUF2627) ISU55_12085 PF00313 'Cold-shock' DNA-binding domain ISU55_12090 PF02578 Multi-copper polyphenol oxidoreductase laccase ISU55_12095 PF13847 Methyltransferase domain ISU55_12110 PF07715 TonB-dependent Receptor Plug Domain ISU55_12110 PF00593 TonB dependent receptor ISU55_12120 PF01695 IstB-like ATP binding protein ISU55_12125 PF00665 Integrase core domain ISU55_12125 PF02796 Helix-turn-helix domain of resolvase ISU55_12135 PF00872 Transposase, Mutator family ISU55_12140 PF01306 LacY proton/sugar symporter ISU55_12145 PF16874 Glycosyl hydrolase family 36 C-terminal domain ISU55_12145 PF16875 Glycosyl hydrolase family 36 N-terminal domain ISU55_12155 PF17837 4'-phosphopantetheinyl transferase N-terminal domain ISU55_12155 PF01648 4'-phosphopantetheinyl transferase superfamily ISU55_12160 PF03480 Bacterial extracellular solute-binding protein, family 7 ISU55_12170 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component ISU55_12175 PF00072 Response regulator receiver domain ISU55_12175 PF00196 Bacterial regulatory proteins, luxR family ISU55_12185 PF09831 Uncharacterized protein conserved in bacteria (DUF2058) ISU55_12195 PF01522 Polysaccharide deacetylase ISU55_12205 PF01554 MatE ISU55_12210 PF00764 Arginosuccinate synthase ISU55_12215 PF01070 FMN-dependent dehydrogenase ISU55_12220 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain ISU55_12220 PF13378 Enolase C-terminal domain-like ISU55_12225 PF01557 Fumarylacetoacetate (FAA) hydrolase family ISU55_12235 PF04134 Protein of unknown function, DUF393 ISU55_12240 PF07690 Major Facilitator Superfamily ISU55_12245 PF02369 Bacterial Ig-like domain (group 1) ISU55_12245 PF11924 Inverse autotransporter, beta-domain ISU55_12245 PF09134 Invasin, domain 3 ISU55_12250 PF00872 Transposase, Mutator family ISU55_12255 PF04363 Protein of unknown function (DUF496) ISU55_12265 PF08411 Exonuclease C-terminal ISU55_12265 PF00929 Exonuclease ISU55_12275 PF13520 Amino acid permease ISU55_12280 PF00465 Iron-containing alcohol dehydrogenase ISU55_12285 PF00005 ABC transporter ISU55_12290 PF00005 ABC transporter ISU55_12295 PF02653 Branched-chain amino acid transport system / permease component ISU55_12310 PF01370 NAD dependent epimerase/dehydratase family ISU55_12320 PF08029 HisG, C-terminal domain ISU55_12320 PF01634 ATP phosphoribosyltransferase ISU55_12325 PF00815 Histidinol dehydrogenase ISU55_12330 PF00155 Aminotransferase class I and II ISU55_12335 PF00475 Imidazoleglycerol-phosphate dehydratase ISU55_12340 PF00117 Glutamine amidotransferase class-I ISU55_12345 PF00977 Histidine biosynthesis protein ISU55_12350 PF00977 Histidine biosynthesis protein ISU55_12355 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase ISU55_12355 PF01502 Phosphoribosyl-AMP cyclohydrolase ISU55_12360 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain ISU55_12360 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase ISU55_12365 PF00483 Nucleotidyl transferase ISU55_12370 PF00483 Nucleotidyl transferase ISU55_12375 PF04183 IucA / IucC family ISU55_12375 PF06276 Ferric iron reductase FhuF-like transporter ISU55_12380 PF07660 Secretin and TonB N terminus short domain ISU55_12380 PF07715 TonB-dependent Receptor Plug Domain ISU55_12380 PF00593 TonB dependent receptor ISU55_12385 PF01497 Periplasmic binding protein ISU55_12390 PF01032 FecCD transport family ISU55_12395 PF01032 FecCD transport family ISU55_12400 PF00005 ABC transporter ISU55_12405 PF04183 IucA / IucC family ISU55_12405 PF06276 Ferric iron reductase FhuF-like transporter ISU55_12415 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) ISU55_12420 PF00282 Pyridoxal-dependent decarboxylase conserved domain ISU55_12425 PF11575 FhuF 2Fe-2S C-terminal domain ISU55_12425 PF06276 Ferric iron reductase FhuF-like transporter ISU55_12430 PF00571 CBS domain ISU55_12430 PF03471 Transporter associated domain ISU55_12430 PF03741 Integral membrane protein TerC family ISU55_12435 PF05170 AsmA family ISU55_12440 PF00692 dUTPase ISU55_12445 PF00485 Phosphoribulokinase / Uridine kinase family ISU55_12450 PF10609 NUBPL iron-transfer P-loop NTPase ISU55_12455 PF09334 tRNA synthetases class I (M) ISU55_12455 PF01588 Putative tRNA binding domain ISU55_12460 PF01797 Transposase IS200 like ISU55_12480 PF07690 Major Facilitator Superfamily ISU55_12485 PF03788 LrgA family ISU55_12490 PF04172 LrgB-like family ISU55_12495 PF08211 Cytidine and deoxycytidylate deaminase zinc-binding region ISU55_12495 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region ISU55_12500 PF00390 Malic enzyme, N-terminal domain ISU55_12500 PF03949 Malic enzyme, NAD binding domain ISU55_12505 PF02698 DUF218 domain ISU55_12510 PF02653 Branched-chain amino acid transport system / permease component ISU55_12515 PF00005 ABC transporter ISU55_12520 PF13407 Periplasmic binding protein domain ISU55_12525 PF04235 Protein of unknown function (DUF418) ISU55_12530 PF01227 GTP cyclohydrolase I ISU55_12535 PF06779 Uncharacterised MFS-type transporter YbfB ISU55_12540 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ISU55_12540 PF03466 LysR substrate binding domain ISU55_12545 PF00107 Zinc-binding dehydrogenase ISU55_12545 PF08240 Alcohol dehydrogenase GroES-like domain ISU55_12550 PF00756 Putative esterase ISU55_12570 PF00005 ABC transporter ISU55_12580 PF00994 Probable molybdopterin binding domain ISU55_12580 PF03453 MoeA N-terminal region (domain I and II) ISU55_12580 PF03454 MoeA C-terminal region (domain IV) ISU55_12585 PF00899 ThiF family ISU55_12590 PF00872 Transposase, Mutator family ISU55_12600 PF12848 ABC transporter ISU55_12600 PF00005 ABC transporter ISU55_12690 PF13296 Putative type VI secretion system Rhs element Vgr ISU55_12690 PF04717 Type VI secretion system, phage-baseplate injector ISU55_12690 PF10106 Uncharacterized protein conserved in bacteria (DUF2345) ISU55_12695 PF10431 C-terminal, D2-small domain, of ClpB protein ISU55_12695 PF17871 AAA lid domain ISU55_12695 PF00004 ATPase family associated with various cellular activities (AAA) ISU55_12695 PF07724 AAA domain (Cdc48 subfamily) ISU55_12705 PF05736 OprF membrane domain ISU55_12705 PF00691 OmpA family ISU55_12720 PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath ISU55_12730 PF00698 Acyl transferase domain ISU55_12735 PF00550 Phosphopantetheine attachment site ISU55_12750 PF00378 Enoyl-CoA hydratase/isomerase ISU55_12760 PF01154 Hydroxymethylglutaryl-coenzyme A synthase N terminal ISU55_12760 PF08540 Hydroxymethylglutaryl-coenzyme A synthase C terminal ISU55_12770 PF00109 Beta-ketoacyl synthase, N-terminal domain ISU55_12770 PF02801 Beta-ketoacyl synthase, C-terminal domain ISU55_12775 PF07977 FabA-like domain ISU55_12790 PF01565 FAD binding domain ISU55_12790 PF08031 Berberine and berberine like ISU55_12810 PF04358 DsrC like protein ISU55_12815 PF00708 Acylphosphatase ISU55_12820 PF17785 PUA-like domain ISU55_12820 PF10672 S-adenosylmethionine-dependent methyltransferase ISU55_12825 PF08755 Hemimethylated DNA-binding protein YccV like ISU55_12830 PF13380 CoA binding domain ISU55_12835 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) ISU55_12840 PF02142 MGS-like domain ISU55_12845 PF12462 DNA helicase IV / RNA helicase N terminal ISU55_12845 PF00580 UvrD/REP helicase N-terminal domain ISU55_12845 PF13361 UvrD-like helicase C-terminal domain ISU55_12850 PF03733 Inner membrane component domain ISU55_12855 PF12805 FUSC-like inner membrane protein yccS ISU55_12860 PF04994 TfoX C-terminal domain ISU55_12860 PF04993 TfoX N-terminal domain ISU55_12865 PF03846 Cell division inhibitor SulA ISU55_12870 PF00691 OmpA family ISU55_12870 PF01389 OmpA-like transmembrane domain ISU55_12875 PF01797 Transposase IS200 like ISU55_12880 PF17414 MatP C-terminal ribbon-helix-helix domain ISU55_12880 PF06303 MatP N-terminal domain ISU55_12885 PF13654 AAA domain ISU55_12885 PF05362 Lon protease (S16) C-terminal proteolytic domain ISU55_12890 PF07977 FabA-like domain ISU55_12905 PF02796 Helix-turn-helix domain of resolvase ISU55_12905 PF00665 Integrase core domain ISU55_12910 PF01695 IstB-like ATP binding protein ISU55_12920 PF01797 Transposase IS200 like ISU55_12925 PF04957 Ribosome modulation factor ISU55_12930 PF03886 ABC-type transport auxiliary lipoprotein component ISU55_12935 PF02470 MlaD protein ISU55_12940 PF04403 Paraquat-inducible protein A ISU55_12945 PF00005 ABC transporter ISU55_12945 PF16326 ABC transporter C-terminal domain ISU55_12945 PF12848 ABC transporter ISU55_12950 PF02926 THUMP domain ISU55_12950 PF01170 Putative RNA methylase family UPF0020 ISU55_12950 PF10672 S-adenosylmethionine-dependent methyltransferase ISU55_12955 PF03476 MOSC N-terminal beta barrel domain ISU55_12955 PF03473 MOSC domain ISU55_12955 PF00111 2Fe-2S iron-sulfur cluster binding domain ISU55_12960 PF07126 Cell-division protein ZapC ISU55_12965 PF01180 Dihydroorotate dehydrogenase ISU55_12970 PF11940 Domain of unknown function (DUF3458) Ig-like fold ISU55_12970 PF17432 Domain of unknown function (DUF3458_C) ARM repeats ISU55_12970 PF01433 Peptidase family M1 domain ISU55_12975 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family ISU55_12975 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain ISU55_12980 PF01336 OB-fold nucleic acid binding domain ISU55_12980 PF00152 tRNA synthetases class II (D, K and N) ISU55_12985 PF00267 Gram-negative porin ISU55_12990 PF00155 Aminotransferase class I and II ISU55_13000 PF00753 Metallo-beta-lactamase superfamily ISU55_13005 PF05951 Bacterial protein of unknown function (DUF882) ISU55_13010 PF03734 L,D-transpeptidase catalytic domain ISU55_13010 PF01471 Putative peptidoglycan binding domain ISU55_13015 PF01797 Transposase IS200 like ISU55_13020 PF04310 MukB N-terminal ISU55_13020 PF16330 MukB hinge domain ISU55_13025 PF04288 MukE-like family ISU55_13030 PF03882 MukF winged-helix domain ISU55_13030 PF17192 MukF middle domain ISU55_13030 PF17193 MukF C-terminal domain ISU55_13035 PF13847 Methyltransferase domain ISU55_13040 PF01636 Phosphotransferase enzyme family ISU55_13045 PF02348 Cytidylyltransferase ISU55_13050 PF03966 Trm112p-like protein ISU55_13055 PF00313 'Cold-shock' DNA-binding domain ISU55_13060 PF07063 Domain of unknown function (DUF1338) ISU55_13065 PF02606 Tetraacyldisaccharide-1-P 4'-kinase ISU55_13070 PF00005 ABC transporter ISU55_13070 PF00664 ABC transporter transmembrane region ISU55_13075 PF03772 Competence protein ISU55_13075 PF00753 Metallo-beta-lactamase superfamily ISU55_13080 PF00216 Bacterial DNA-binding protein ISU55_13085 PF00575 S1 RNA binding domain ISU55_13090 PF02224 Cytidylate kinase ISU55_13095 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) ISU55_13100 PF00266 Aminotransferase class-V ISU55_13110 PF05658 Head domain of trimeric autotransporter adhesin ISU55_13110 PF03895 YadA-like membrane anchor domain ISU55_13110 PF03895 YadA-like membrane anchor domain ISU55_13110 PF05662 Coiled stalk of trimeric autotransporter adhesin ISU55_13110 PF13018 Extended Signal Peptide of Type V secretion system ISU55_13110 PF05658 Head domain of trimeric autotransporter adhesin ISU55_13110 PF13018 Extended Signal Peptide of Type V secretion system ISU55_13110 PF05662 Coiled stalk of trimeric autotransporter adhesin ISU55_13115 PF17763 Glutaminase/Asparaginase C-terminal domain ISU55_13115 PF00710 Asparaginase, N-terminal ISU55_13120 PF18381 YcaO cyclodehydratase C-terminal domain ISU55_13120 PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding ISU55_13125 PF01226 Formate/nitrite transporter ISU55_13130 PF01228 Glycine radical ISU55_13130 PF02901 Pyruvate formate lyase-like ISU55_13140 PF04055 Radical SAM superfamily ISU55_13150 PF02796 Helix-turn-helix domain of resolvase ISU55_13150 PF00665 Integrase core domain ISU55_13155 PF01695 IstB-like ATP binding protein ISU55_13165 PF02403 Seryl-tRNA synthetase N-terminal domain ISU55_13165 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) ISU55_13170 PF12002 MgsA AAA+ ATPase C terminal ISU55_13170 PF00004 ATPase family associated with various cellular activities (AAA) ISU55_13170 PF16193 AAA C-terminal domain ISU55_13175 PF03548 Outer membrane lipoprotein carrier protein LolA ISU55_13180 PF09397 Ftsk gamma domain ISU55_13180 PF17854 FtsK alpha domain ISU55_13180 PF01580 FtsK/SpoIIIE family ISU55_13180 PF13491 4TM region of DNA translocase FtsK/SpoIIIE ISU55_13185 PF01037 Lrp/AsnC ligand binding domain ISU55_13190 PF07992 Pyridine nucleotide-disulphide oxidoreductase ISU55_13195 PF00664 ABC transporter transmembrane region ISU55_13195 PF00005 ABC transporter ISU55_13200 PF00664 ABC transporter transmembrane region ISU55_13200 PF00005 ABC transporter ISU55_13205 PF03588 Leucyl/phenylalanyl-tRNA protein transferase ISU55_13210 PF01176 Translation initiation factor 1A / IF-1 ISU55_13215 PF01797 Transposase IS200 like ISU55_13220 PF00004 ATPase family associated with various cellular activities (AAA) ISU55_13220 PF07724 AAA domain (Cdc48 subfamily) ISU55_13220 PF17871 AAA lid domain ISU55_13220 PF02861 Clp amino terminal domain, pathogenicity island component ISU55_13220 PF10431 C-terminal, D2-small domain, of ClpB protein ISU55_13225 PF02617 ATP-dependent Clp protease adaptor protein ClpS ISU55_13230 PF00313 'Cold-shock' DNA-binding domain ISU55_13235 PF00005 ABC transporter ISU55_13235 PF02687 FtsX-like permease family ISU55_13235 PF12704 MacB-like periplasmic core domain ISU55_13240 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion ISU55_13245 PF04393 Protein of unknown function (DUF535) ISU55_13250 PF11398 Protein of unknown function (DUF2813) ISU55_13255 PF03956 Lysine exporter LysO ISU55_13260 PF03063 Prismane/CO dehydrogenase family ISU55_13265 PF00111 2Fe-2S iron-sulfur cluster binding domain ISU55_13265 PF00970 Oxidoreductase FAD-binding domain ISU55_13265 PF00175 Oxidoreductase NAD-binding domain ISU55_13270 PF00205 Thiamine pyrophosphate enzyme, central domain ISU55_13270 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain ISU55_13270 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain ISU55_13280 PF01212 Beta-eliminating lyase ISU55_13285 PF13460 NAD(P)H-binding ISU55_13285 PF11066 Protein of unknown function (DUF2867) ISU55_13290 PF01370 NAD dependent epimerase/dehydratase family ISU55_13295 PF12883 Protein of unknown function (DUF3828) ISU55_13300 PF01817 Chorismate mutase type II ISU55_13305 PF00005 ABC transporter ISU55_13310 PF00497 Bacterial extracellular solute-binding proteins, family 3 ISU55_13315 PF00528 Binding-protein-dependent transport system inner membrane component ISU55_13320 PF00528 Binding-protein-dependent transport system inner membrane component ISU55_13330 PF00892 EamA-like transporter family ISU55_13335 PF10100 Staphylopine dehydrogenase ISU55_13340 PF03059 Nicotianamine synthase protein ISU55_13345 PF00005 ABC transporter ISU55_13350 PF01032 FecCD transport family ISU55_13355 PF01032 FecCD transport family ISU55_13380 PF00497 Bacterial extracellular solute-binding proteins, family 3 ISU55_13385 PF05958 tRNA (Uracil-5-)-methyltransferase ISU55_13390 PF10767 Protein of unknown function (DUF2593) ISU55_13395 PF00528 Binding-protein-dependent transport system inner membrane component ISU55_13400 PF00528 Binding-protein-dependent transport system inner membrane component ISU55_13405 PF08402 TOBE domain ISU55_13405 PF00005 ABC transporter ISU55_13410 PF13416 Bacterial extracellular solute-binding protein ISU55_13415 PF10722 Putative bacterial sensory transduction regulator ISU55_13420 PF07214 Protein of unknown function (DUF1418) ISU55_13425 PF00462 Glutaredoxin ISU55_13430 PF02080 TrkA-C domain ISU55_13430 PF06826 Predicted Permease Membrane Region ISU55_13440 PF01569 PAP2 superfamily ISU55_13445 PF01791 DeoC/LacD family aldolase ISU55_13450 PF00455 DeoR C terminal sensor domain ISU55_13450 PF08220 DeoR-like helix-turn-helix domain ISU55_13460 PF00768 D-alanyl-D-alanine carboxypeptidase ISU55_13460 PF07943 Penicillin-binding protein 5, C-terminal domain ISU55_13465 PF00528 Binding-protein-dependent transport system inner membrane component ISU55_13470 PF09383 NIL domain ISU55_13470 PF00005 ABC transporter ISU55_13475 PF03180 NLPA lipoprotein ISU55_13490 PF00043 Glutathione S-transferase, C-terminal domain ISU55_13490 PF13417 Glutathione S-transferase, N-terminal domain ISU55_13495 PF00593 TonB dependent receptor ISU55_13495 PF07715 TonB-dependent Receptor Plug Domain ISU55_13500 PF00005 ABC transporter ISU55_13505 PF01032 FecCD transport family ISU55_13515 PF00324 Amino acid permease ISU55_13520 PF03466 LysR substrate binding domain ISU55_13520 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ISU55_13525 PF03601 Conserved hypothetical protein 698 ISU55_13530 PF01261 Xylose isomerase-like TIM barrel ISU55_13535 PF13954 PapC N-terminal domain ISU55_13535 PF00577 Outer membrane usher protein ISU55_13535 PF13953 PapC C-terminal domain ISU55_13540 PF02753 Pili assembly chaperone PapD, C-terminal domain ISU55_13540 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain ISU55_13550 PF17550 Family of unknown function ISU55_13555 PF00486 Transcriptional regulatory protein, C terminal ISU55_13560 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit ISU55_13560 PF02378 Phosphotransferase system, EIIC ISU55_13565 PF00294 pfkB family carbohydrate kinase ISU55_13570 PF00381 PTS HPr component phosphorylation site ISU55_13570 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 ISU55_13575 PF00293 NUDIX domain ISU55_13580 PF02653 Branched-chain amino acid transport system / permease component ISU55_13585 PF00005 ABC transporter ISU55_13595 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) ISU55_13600 PF02782 FGGY family of carbohydrate kinases, C-terminal domain ISU55_13600 PF00370 FGGY family of carbohydrate kinases, N-terminal domain ISU55_13605 PF00171 Aldehyde dehydrogenase family ISU55_13615 PF01842 ACT domain ISU55_13615 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain ISU55_13615 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ISU55_13625 PF03692 Putative zinc- or iron-chelating domain ISU55_13630 PF03222 Tryptophan/tyrosine permease family ISU55_13635 PF01132 Elongation factor P (EF-P) OB domain ISU55_13635 PF08207 Elongation factor P (EF-P) KOW-like domain ISU55_13635 PF09285 Elongation factor P, C-terminal ISU55_13640 PF03786 D-mannonate dehydratase (UxuA) ISU55_13645 PF08125 Mannitol dehydrogenase C-terminal domain ISU55_13645 PF01232 Mannitol dehydrogenase Rossmann domain ISU55_13650 PF00392 Bacterial regulatory proteins, gntR family ISU55_13650 PF07729 FCD domain ISU55_13655 PF02492 CobW/HypB/UreG, nucleotide-binding domain ISU55_13655 PF07683 Cobalamin synthesis protein cobW C-terminal domain ISU55_13660 PF01569 PAP2 superfamily ISU55_13665 PF00877 NlpC/P60 family ISU55_13670 PF00563 EAL domain ISU55_13670 PF12792 CSS motif domain associated with EAL ISU55_13675 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle ISU55_13680 PF00528 Binding-protein-dependent transport system inner membrane component ISU55_13685 PF12911 N-terminal TM domain of oligopeptide transport permease C ISU55_13685 PF00528 Binding-protein-dependent transport system inner membrane component ISU55_13690 PF08352 Oligopeptide/dipeptide transporter, C-terminal region ISU55_13690 PF00005 ABC transporter ISU55_13695 PF13989 YejG-like protein ISU55_13700 PF07690 Major Facilitator Superfamily ISU55_13705 PF01479 S4 domain ISU55_13705 PF00849 RNA pseudouridylate synthase ISU55_13710 PF04851 Type III restriction enzyme, res subunit ISU55_13710 PF00271 Helicase conserved C-terminal domain ISU55_13715 PF01386 Ribosomal L25p family ISU55_13720 PF01797 Transposase IS200 like ISU55_13725 PF04245 37-kD nucleoid-associated bacterial protein ISU55_13730 PF07208 Protein of unknown function (DUF1414) ISU55_13735 PF11893 Domain of unknown function (DUF3413) ISU55_13735 PF00884 Sulfatase ISU55_13750 PF05638 Type VI secretion system effector, Hcp ISU55_13770 PF00232 Glycosyl hydrolase family 1 ISU55_13775 PF01380 SIS domain ISU55_13775 PF01418 Helix-turn-helix domain, rpiR family ISU55_13780 PF07484 Phage Tail Collar Domain ISU55_13795 PF04865 Baseplate J-like protein ISU55_13835 PF04984 Phage tail sheath protein subtilisin-like domain ISU55_13835 PF17482 Phage tail sheath C-terminal domain ISU55_13855 PF01261 Xylose isomerase-like TIM barrel ISU55_13860 PF00455 DeoR C terminal sensor domain ISU55_13860 PF08220 DeoR-like helix-turn-helix domain ISU55_13870 PF07005 Sugar-binding N-terminal domain ISU55_13870 PF17042 Nucleotide-binding C-terminal domain ISU55_13875 PF06530 Phage antitermination protein Q ISU55_13880 PF01381 Helix-turn-helix ISU55_13880 PF00717 Peptidase S24-like ISU55_13885 PF06183 DinI-like family ISU55_13890 PF01278 Omptin family ISU55_13895 PF00672 HAMP domain ISU55_13895 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ISU55_13895 PF02743 Cache domain ISU55_13900 PF12706 Beta-lactamase superfamily domain ISU55_13910 PF00144 Beta-lactamase ISU55_13925 PF01797 Transposase IS200 like ISU55_13930 PF00267 Gram-negative porin ISU55_13935 PF07690 Major Facilitator Superfamily ISU55_13940 PF01627 Hpt domain ISU55_13940 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ISU55_13940 PF16359 RcsD-ABL domain ISU55_13945 PF16359 RcsD-ABL domain ISU55_13945 PF01627 Hpt domain ISU55_13945 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ISU55_13950 PF00072 Response regulator receiver domain ISU55_13950 PF00196 Bacterial regulatory proteins, luxR family ISU55_13955 PF00072 Response regulator receiver domain ISU55_13955 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ISU55_13955 PF00512 His Kinase A (phospho-acceptor) domain ISU55_13955 PF09456 RcsC Alpha-Beta-Loop (ABL) ISU55_13960 PF03989 DNA gyrase C-terminal domain, beta-propeller ISU55_13960 PF00521 DNA gyrase/topoisomerase IV, subunit A ISU55_13970 PF02867 Ribonucleotide reductase, barrel domain ISU55_13970 PF00317 Ribonucleotide reductase, all-alpha domain ISU55_13970 PF03477 ATP cone domain ISU55_13975 PF00268 Ribonucleotide reductase, small chain ISU55_13980 PF00111 2Fe-2S iron-sulfur cluster binding domain ISU55_13985 PF03974 Ecotin ISU55_13990 PF00994 Probable molybdopterin binding domain ISU55_13995 PF03222 Tryptophan/tyrosine permease family ISU55_14000 PF07437 YfaZ precursor ISU55_14005 PF06628 Catalase-related immune-responsive ISU55_14005 PF00199 Catalase ISU55_14010 PF13307 Helicase C-terminal domain ISU55_14010 PF06733 DEAD_2 ISU55_14015 PF00267 Gram-negative porin ISU55_14020 PF00892 EamA-like transporter family ISU55_14030 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain ISU55_14030 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain ISU55_14030 PF01276 Orn/Lys/Arg decarboxylase, major domain ISU55_14035 PF13520 Amino acid permease ISU55_14040 PF00528 Binding-protein-dependent transport system inner membrane component ISU55_14045 PF00005 ABC transporter ISU55_14050 PF00528 Binding-protein-dependent transport system inner membrane component ISU55_14060 PF00581 Rhodanese-like domain ISU55_14075 PF00005 ABC transporter ISU55_14080 PF00005 ABC transporter ISU55_14085 PF02653 Branched-chain amino acid transport system / permease component ISU55_14090 PF02653 Branched-chain amino acid transport system / permease component ISU55_14095 PF00158 Sigma-54 interaction domain ISU55_14095 PF02954 Bacterial regulatory protein, Fis family ISU55_14095 PF13188 PAS domain ISU55_14100 PF07308 Protein of unknown function (DUF1456) ISU55_14105 PF00528 Binding-protein-dependent transport system inner membrane component ISU55_14110 PF00528 Binding-protein-dependent transport system inner membrane component ISU55_14120 PF00005 ABC transporter ISU55_14125 PF04226 Transglycosylase associated protein ISU55_14135 PF01844 HNH endonuclease ISU55_14140 PF01928 CYTH domain ISU55_14145 PF01565 FAD binding domain ISU55_14145 PF09330 D-lactate dehydrogenase, membrane binding ISU55_14150 PF00768 D-alanyl-D-alanine carboxypeptidase ISU55_14160 PF01207 Dihydrouridine synthase (Dus) ISU55_14170 PF01797 Transposase IS200 like ISU55_14185 PF00872 Transposase, Mutator family ISU55_14220 PF00271 Helicase conserved C-terminal domain ISU55_14220 PF00270 DEAD/DEAH box helicase ISU55_14225 PF00440 Bacterial regulatory proteins, tetR family ISU55_14225 PF09209 Tetracyclin repressor-like, C-terminal domain ISU55_14230 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion ISU55_14235 PF00005 ABC transporter ISU55_14260 PF03466 LysR substrate binding domain ISU55_14260 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ISU55_14265 PF00724 NADH:flavin oxidoreductase / NADH oxidase family ISU55_14270 PF00072 Response regulator receiver domain ISU55_14270 PF00158 Sigma-54 interaction domain ISU55_14270 PF02954 Bacterial regulatory protein, Fis family ISU55_14275 PF00512 His Kinase A (phospho-acceptor) domain ISU55_14275 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ISU55_14280 PF13801 Heavy-metal resistance ISU55_14290 PF01797 Transposase IS200 like ISU55_14300 PF01048 Phosphorylase superfamily ISU55_14310 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ISU55_14310 PF03466 LysR substrate binding domain ISU55_14315 PF02028 BCCT, betaine/carnitine/choline family transporter ISU55_14320 PF00440 Bacterial regulatory proteins, tetR family ISU55_14320 PF13977 BetI-type transcriptional repressor, C-terminal ISU55_14325 PF00171 Aldehyde dehydrogenase family ISU55_14330 PF00732 GMC oxidoreductase ISU55_14330 PF05199 GMC oxidoreductase ISU55_14335 PF01797 Transposase IS200 like ISU55_14340 PF01027 Inhibitor of apoptosis-promoting Bax1 ISU55_14345 PF02391 MoaE protein ISU55_14350 PF02597 ThiS family ISU55_14355 PF01967 MoaC family ISU55_14360 PF06463 Molybdenum Cofactor Synthesis C ISU55_14360 PF04055 Radical SAM superfamily ISU55_14365 PF01933 Uncharacterised protein family UPF0052 ISU55_14370 PF09905 DNA-binding protein VF530 ISU55_14375 PF17757 UvrB interaction domain ISU55_14375 PF02151 UvrB/uvrC motif ISU55_14375 PF04851 Type III restriction enzyme, res subunit ISU55_14375 PF12344 Ultra-violet resistance protein B ISU55_14375 PF00271 Helicase conserved C-terminal domain ISU55_14380 PF09383 NIL domain ISU55_14380 PF00005 ABC transporter ISU55_14390 PF08241 Methyltransferase domain ISU55_14395 PF00155 Aminotransferase class I and II ISU55_14400 PF06968 Biotin and Thiamin Synthesis associated domain ISU55_14400 PF04055 Radical SAM superfamily ISU55_14405 PF00202 Aminotransferase class-III ISU55_14410 PF10282 Lactonase, 7-bladed beta-propeller ISU55_14420 PF00005 ABC transporter ISU55_14420 PF03459 TOBE domain ISU55_14425 PF00528 Binding-protein-dependent transport system inner membrane component ISU55_14435 PF10766 Multidrug efflux pump-associated protein AcrZ ISU55_14440 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ISU55_14440 PF03459 TOBE domain ISU55_14445 PF00005 ABC transporter ISU55_14455 PF16363 GDP-mannose 4,6 dehydratase ISU55_14460 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain ISU55_14460 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain ISU55_14465 PF08544 GHMP kinases C terminal ISU55_14465 PF00288 GHMP kinases N terminal domain ISU55_14465 PF10509 Galactokinase galactose-binding signature ISU55_14475 PF01263 Aldose 1-epimerase ISU55_14485 PF00300 Histidine phosphatase superfamily (branch 1) ISU55_14490 PF00793 DAHP synthetase I family ISU55_14495 PF01545 Cation efflux family ISU55_14500 PF04973 Nicotinamide mononucleotide transporter ISU55_14505 PF02445 Quinolinate synthetase A protein ISU55_14525 PF16331 TolA binding protein trimerisation ISU55_14525 PF13174 Tetratricopeptide repeat ISU55_14530 PF00691 OmpA family ISU55_14535 PF07676 WD40-like Beta Propeller Repeat ISU55_14535 PF04052 TolB amino-terminal domain ISU55_14540 PF06519 TolA C-terminal ISU55_14540 PF06519 TolA C-terminal ISU55_14545 PF02472 Biopolymer transport protein ExbD/TolR ISU55_14550 PF01618 MotA/TolQ/ExbB proton channel family ISU55_14555 PF03061 Thioesterase superfamily ISU55_14560 PF09600 Cyd operon protein YbgE (Cyd_oper_YbgE) ISU55_14565 PF08173 Membrane bound YbgT-like protein ISU55_14570 PF02322 Cytochrome bd terminal oxidase subunit II ISU55_14575 PF01654 Cytochrome bd terminal oxidase subunit I ISU55_14580 PF00549 CoA-ligase ISU55_14580 PF02629 CoA binding domain ISU55_14585 PF00549 CoA-ligase ISU55_14585 PF08442 ATP-grasp domain ISU55_14590 PF00364 Biotin-requiring enzyme ISU55_14590 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) ISU55_14590 PF02817 e3 binding domain ISU55_14595 PF16870 2-oxoglutarate dehydrogenase C-terminal ISU55_14595 PF02779 Transketolase, pyrimidine binding domain ISU55_14595 PF00676 Dehydrogenase E1 component ISU55_14595 PF16078 2-oxoglutarate dehydrogenase N-terminus ISU55_14600 PF13085 2Fe-2S iron-sulfur cluster binding domain ISU55_14605 PF00890 FAD binding domain ISU55_14605 PF02910 Fumarate reductase flavoprotein C-term ISU55_14610 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit ISU55_14615 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit ISU55_14620 PF00285 Citrate synthase, C-terminal domain ISU55_14625 PF01025 GrpE ISU55_14630 PF01513 ATP-NAD kinase ISU55_14635 PF02463 RecF/RecN/SMC N terminal domain ISU55_14640 PF04355 SmpA / OmlA family ISU55_14645 PF03658 RnfH family Ubiquitin ISU55_14650 PF03364 Polyketide cyclase / dehydrase and lipid transport ISU55_14655 PF01668 SmpB protein ISU55_14665 PF01797 Transposase IS200 like ISU55_14670 PF00589 Phage integrase family ISU55_14670 PF13356 Arm DNA-binding domain ISU55_14720 PF05973 Phage derived protein Gp49-like (DUF891) ISU55_14730 PF00665 Integrase core domain ISU55_14730 PF02796 Helix-turn-helix domain of resolvase ISU55_14735 PF01695 IstB-like ATP binding protein ISU55_14745 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin ISU55_14755 PF00929 Exonuclease ISU55_14760 PF00075 RNase H ISU55_14765 PF08241 Methyltransferase domain ISU55_14770 PF16123 Hydroxyacylglutathione hydrolase C-terminus ISU55_14770 PF00753 Metallo-beta-lactamase superfamily ISU55_14775 PF01476 LysM domain ISU55_14775 PF01464 Transglycosylase SLT domain ISU55_14780 PF03372 Endonuclease/Exonuclease/phosphatase family ISU55_14790 PF00248 Aldo/keto reductase family ISU55_14825 PF09383 NIL domain ISU55_14825 PF00005 ABC transporter ISU55_14830 PF00528 Binding-protein-dependent transport system inner membrane component ISU55_14835 PF03180 NLPA lipoprotein ISU55_14840 PF16358 RcsF lipoprotein ISU55_14845 PF18389 TrmO C-terminal domain ISU55_14845 PF01980 tRNA-methyltransferase O ISU55_14850 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) ISU55_14850 PF04073 Aminoacyl-tRNA editing domain ISU55_14850 PF03129 Anticodon binding domain ISU55_14855 PF17185 NlpE C-terminal OB domain ISU55_14855 PF04170 NlpE N-terminal domain ISU55_14860 PF00472 RF-1 domain ISU55_14865 PF07152 YaeQ protein ISU55_14870 PF06786 Uncharacterised protein family (UPF0253) ISU55_14875 PF07073 Modulator of Rho-dependent transcription termination (ROF) ISU55_14880 PF00034 Cytochrome c ISU55_14885 PF11734 TilS substrate C-terminal domain ISU55_14885 PF01171 PP-loop family ISU55_14885 PF09179 TilS substrate binding domain ISU55_14890 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily ISU55_14895 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit ISU55_14900 PF02811 PHP domain ISU55_14900 PF07733 Bacterial DNA polymerase III alpha NTPase domain ISU55_14900 PF17657 Bacterial DNA polymerase III alpha subunit finger domain ISU55_14900 PF14579 Helix-hairpin-helix motif ISU55_14900 PF01336 OB-fold nucleic acid binding domain ISU55_14905 PF01351 Ribonuclease HII ISU55_14910 PF02684 Lipid-A-disaccharide synthetase ISU55_14915 PF00132 Bacterial transferase hexapeptide (six repeats) ISU55_14915 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 ISU55_14920 PF07977 FabA-like domain ISU55_14925 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD ISU55_14925 PF00132 Bacterial transferase hexapeptide (six repeats) ISU55_14930 PF03938 Outer membrane protein (OmpH-like) ISU55_14935 PF01103 Surface antigen ISU55_14935 PF07244 Surface antigen variable number repeat ISU55_14940 PF02163 Peptidase family M50 ISU55_14940 PF17820 PDZ domain ISU55_14950 PF01255 Putative undecaprenyl diphosphate synthase ISU55_14955 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain ISU55_14955 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase ISU55_14955 PF13288 DXP reductoisomerase C-terminal domain ISU55_14960 PF01765 Ribosome recycling factor ISU55_14965 PF00696 Amino acid kinase family ISU55_14970 PF00889 Elongation factor TS ISU55_14975 PF00318 Ribosomal protein S2 ISU55_14980 PF00557 Metallopeptidase family M24 ISU55_14985 PF01842 ACT domain ISU55_14985 PF08335 GlnD PII-uridylyltransferase ISU55_14985 PF01966 HD domain ISU55_14985 PF01909 Nucleotidyltransferase domain ISU55_14990 PF14602 Hexapeptide repeat of succinyl-transferase ISU55_14990 PF00132 Bacterial transferase hexapeptide (six repeats) ISU55_14990 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal ISU55_14995 PF11944 Protein of unknown function (DUF3461) ISU55_15000 PF00258 Flavodoxin ISU55_15005 PF00849 RNA pseudouridylate synthase ISU55_15010 PF04287 tRNA pseudouridine synthase C ISU55_15015 PF01797 Transposase IS200 like ISU55_15020 PF07348 Syd protein (SUKH-2) ISU55_15025 PF14489 QueF-like protein ISU55_15025 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term ISU55_15030 PF11892 Domain of unknown function (DUF3412) ISU55_15030 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases ISU55_15030 PF03641 Possible lysine decarboxylase ISU55_15035 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain ISU55_15035 PF01367 5'-3' exonuclease, C-terminal SAM fold ISU55_15040 PF18125 RlmM ferredoxin-like domain ISU55_15040 PF01728 FtsJ-like methyltransferase ISU55_15045 PF04241 Protein of unknown function (DUF423) ISU55_15050 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ISU55_15050 PF03466 LysR substrate binding domain ISU55_15060 PF00266 Aminotransferase class-V ISU55_15065 PF02657 Fe-S metabolism associated domain ISU55_15070 PF00899 ThiF family ISU55_15075 PF03562 MltA specific insert domain ISU55_15075 PF06725 3D domain ISU55_15090 PF11741 AMIN domain ISU55_15090 PF01520 N-acetylmuramoyl-L-alanine amidase ISU55_15095 PF00696 Amino acid kinase family ISU55_15095 PF00583 Acetyltransferase (GNAT) family ISU55_15100 PF13538 UvrD-like helicase C-terminal domain ISU55_15105 PF13361 UvrD-like helicase C-terminal domain ISU55_15105 PF00580 UvrD/REP helicase N-terminal domain ISU55_15105 PF12705 PD-(D/E)XK nuclease superfamily ISU55_15115 PF00665 Integrase core domain ISU55_15115 PF02796 Helix-turn-helix domain of resolvase ISU55_15120 PF01695 IstB-like ATP binding protein ISU55_15130 PF17946 RecC C-terminal domain ISU55_15155 PF00303 Thymidylate synthase ISU55_15160 PF01790 Prolipoprotein diacylglyceryl transferase ISU55_15165 PF02896 PEP-utilising enzyme, TIM barrel domain ISU55_15165 PF01590 GAF domain ISU55_15165 PF05524 PEP-utilising enzyme, N-terminal ISU55_15165 PF00391 PEP-utilising enzyme, mobile domain ISU55_15170 PF00293 NUDIX domain ISU55_15175 PF02976 DNA mismatch repair enzyme MutH ISU55_15180 PF00248 Aldo/keto reductase family ISU55_15195 PF07690 Major Facilitator Superfamily ISU55_15200 PF00501 AMP-binding enzyme ISU55_15200 PF01553 Acyltransferase ISU55_15200 PF13193 AMP-binding enzyme C-terminal domain ISU55_15205 PF00384 Molybdopterin oxidoreductase ISU55_15205 PF01568 Molydopterin dinucleotide binding domain ISU55_15210 PF00356 Bacterial regulatory proteins, lacI family ISU55_15215 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain ISU55_15215 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain ISU55_15220 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ISU55_15220 PF03466 LysR substrate binding domain ISU55_15225 PF07690 Major Facilitator Superfamily ISU55_15230 PF03466 LysR substrate binding domain ISU55_15230 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ISU55_15245 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ISU55_15245 PF00672 HAMP domain ISU55_15245 PF02203 Tar ligand binding domain homologue ISU55_15265 PF01478 Type IV leader peptidase family ISU55_15265 PF06750 Bacterial Peptidase A24 N-terminal domain ISU55_15285 PF11612 Type II secretion system (T2SS), protein J ISU55_15285 PF07963 Prokaryotic N-terminal methylation motif ISU55_15290 PF02501 Type II secretion system (T2SS), protein I ISU55_15290 PF07963 Prokaryotic N-terminal methylation motif ISU55_15300 PF08334 Type II secretion system (T2SS), protein G ISU55_15300 PF07963 Prokaryotic N-terminal methylation motif ISU55_15310 PF00437 Type II/IV secretion system protein ISU55_15315 PF03958 Bacterial type II/III secretion system short domain ISU55_15315 PF00263 Bacterial type II and III secretion system protein ISU55_15330 PF00484 Carbonic anhydrase ISU55_15350 PF09092 Lyase, N terminal ISU55_15350 PF09093 Lyase, catalytic ISU55_15350 PF02884 Polysaccharide lyase family 8, C-terminal beta-sandwich domain ISU55_15350 PF02278 Polysaccharide lyase family 8, super-sandwich domain ISU55_15355 PF01695 IstB-like ATP binding protein ISU55_15360 PF00665 Integrase core domain ISU55_15360 PF02796 Helix-turn-helix domain of resolvase ISU55_15365 PF01797 Transposase IS200 like ISU55_15370 PF00884 Sulfatase ISU55_15375 PF00455 DeoR C terminal sensor domain ISU55_15375 PF08220 DeoR-like helix-turn-helix domain ISU55_15380 PF08013 Tagatose 6 phosphate kinase ISU55_15385 PF01380 SIS domain ISU55_15390 PF03830 PTS system sorbose subfamily IIB component ISU55_15395 PF03609 PTS system sorbose-specific iic component ISU55_15400 PF03613 PTS system mannose/fructose/sorbose family IID component ISU55_15405 PF03610 PTS system fructose IIA component ISU55_15410 PF01979 Amidohydrolase family ISU55_15420 PF07470 Glycosyl Hydrolase Family 88 ISU55_15425 PF13186 Iron-sulfur cluster-binding domain ISU55_15425 PF04055 Radical SAM superfamily ISU55_15430 PF00884 Sulfatase ISU55_15440 PF01116 Fructose-bisphosphate aldolase class-II ISU55_15450 PF00356 Bacterial regulatory proteins, lacI family ISU55_15455 PF07690 Major Facilitator Superfamily ISU55_15460 PF16338 Domain of unknown function (DUF4968) ISU55_15460 PF17137 Domain of unknown function (DUF5110) ISU55_15460 PF13802 Galactose mutarotase-like ISU55_15460 PF01055 Glycosyl hydrolases family 31 ISU55_15465 PF00356 Bacterial regulatory proteins, lacI family ISU55_15470 PF02264 LamB porin ISU55_15475 PF02378 Phosphotransferase system, EIIC ISU55_15475 PF00367 phosphotransferase system, EIIB ISU55_15480 PF08532 Beta-galactosidase trimerisation domain ISU55_15480 PF08533 Beta-galactosidase C-terminal domain ISU55_15480 PF02449 Beta-galactosidase ISU55_15485 PF07745 Glycosyl hydrolase family 53 ISU55_15490 PF00528 Binding-protein-dependent transport system inner membrane component ISU55_15495 PF00528 Binding-protein-dependent transport system inner membrane component ISU55_15500 PF13416 Bacterial extracellular solute-binding protein ISU55_15505 PF00005 ABC transporter ISU55_15505 PF17912 MalK OB fold domain ISU55_15510 PF00005 ABC transporter ISU55_15515 PF02653 Branched-chain amino acid transport system / permease component ISU55_15520 PF13407 Periplasmic binding protein domain ISU55_15530 PF05708 Permuted papain-like amidase enzyme, YaeF/YiiX, C92 family ISU55_15535 PF03551 Transcriptional regulator PadR-like family ISU55_15625 PF15731 Antitoxin component of bacterial toxin-antitoxin system, MqsA ISU55_15630 PF15723 Motility quorum-sensing regulator, toxin of MqsA ISU55_15650 PF00589 Phage integrase family ISU55_15650 PF13356 Arm DNA-binding domain ISU55_15650 PF14659 Phage integrase, N-terminal SAM-like domain ISU55_15660 PF00152 tRNA synthetases class II (D, K and N) ISU55_15660 PF01336 OB-fold nucleic acid binding domain ISU55_15670 PF01368 DHH family ISU55_15670 PF17768 RecJ OB domain ISU55_15670 PF02272 DHHA1 domain ISU55_15675 PF13098 Thioredoxin-like domain ISU55_15675 PF10411 Disulfide bond isomerase protein N-terminus ISU55_15680 PF00589 Phage integrase family ISU55_15680 PF02899 Phage integrase, N-terminal SAM-like domain ISU55_15685 PF00258 Flavodoxin ISU55_15690 PF06123 Inner membrane protein CreD ISU55_15695 PF00512 His Kinase A (phospho-acceptor) domain ISU55_15695 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ISU55_15695 PF00672 HAMP domain ISU55_15700 PF00072 Response regulator receiver domain ISU55_15700 PF00486 Transcriptional regulatory protein, C terminal ISU55_15705 PF07254 Membrane-bound toxin component of toxin-antitoxin system ISU55_15710 PF03937 Flavinator of succinate dehydrogenase ISU55_15715 PF01571 Aminomethyltransferase folate-binding domain ISU55_15725 PF03006 Haemolysin-III related ISU55_15755 PF02347 Glycine cleavage system P-protein ISU55_15760 PF01597 Glycine cleavage H-protein ISU55_15765 PF08669 Glycine cleavage T-protein C-terminal barrel domain ISU55_15765 PF01571 Aminomethyltransferase folate-binding domain ISU55_15770 PF01494 FAD binding domain ISU55_15775 PF01494 FAD binding domain ISU55_15780 PF05195 Aminopeptidase P, N-terminal domain ISU55_15780 PF00557 Metallopeptidase family M24 ISU55_15785 PF03695 Uncharacterised protein family (UPF0149) ISU55_15790 PF05164 Cell division protein ZapA ISU55_15800 PF01812 5-formyltetrahydrofolate cyclo-ligase family ISU55_15810 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ISU55_15810 PF01842 ACT domain ISU55_15810 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain ISU55_15815 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) ISU55_15820 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ISU55_15820 PF03466 LysR substrate binding domain ISU55_15825 PF04402 Protein of unknown function (DUF541) ISU55_15830 PF01810 LysE type translocator ISU55_15835 PF00924 Mechanosensitive ion channel ISU55_15835 PF05552 Conserved TM helix ISU55_15845 PF01116 Fructose-bisphosphate aldolase class-II ISU55_15850 PF00162 Phosphoglycerate kinase ISU55_15855 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain ISU55_15855 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain ISU55_15865 PF02796 Helix-turn-helix domain of resolvase ISU55_15865 PF00665 Integrase core domain ISU55_15870 PF01695 IstB-like ATP binding protein ISU55_15880 PF00456 Transketolase, thiamine diphosphate binding domain ISU55_15880 PF02780 Transketolase, C-terminal domain ISU55_15880 PF02779 Transketolase, pyrimidine binding domain ISU55_15885 PF01435 Peptidase family M48 ISU55_15900 PF17810 Arginine decarboxylase helical bundle domain ISU55_15900 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain ISU55_15900 PF17944 Arginine decarboxylase C-terminal helical extension ISU55_15905 PF00438 S-adenosylmethionine synthetase, N-terminal domain ISU55_15905 PF02772 S-adenosylmethionine synthetase, central domain ISU55_15905 PF02773 S-adenosylmethionine synthetase, C-terminal domain ISU55_15910 PF10263 SprT-like family ISU55_15910 PF17283 SprT-like zinc ribbon domain ISU55_15915 PF04231 Endonuclease I ISU55_15920 PF04452 RNA methyltransferase ISU55_15925 PF02951 Prokaryotic glutathione synthetase, N-terminal domain ISU55_15925 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain ISU55_15930 PF02622 Uncharacterized ACR, COG1678 ISU55_15935 PF03652 Holliday junction resolvase ISU55_15940 PF00795 Carbon-nitrogen hydrolase ISU55_15945 PF04371 Porphyromonas-type peptidyl-arginine deiminase ISU55_15950 PF00437 Type II/IV secretion system protein ISU55_15955 PF01168 Alanine racemase, N-terminal domain ISU55_15960 PF14748 Pyrroline-5-carboxylate reductase dimerisation ISU55_15960 PF03807 NADP oxidoreductase coenzyme F420-dependent ISU55_15965 PF02325 YGGT family ISU55_15970 PF02594 Uncharacterised ACR, YggU family COG1872 ISU55_15975 PF01725 Ham1 family ISU55_15980 PF06969 HemN C-terminal domain ISU55_15980 PF04055 Radical SAM superfamily ISU55_15985 PF07634 RtxA repeat ISU55_15985 PF12146 Serine aminopeptidase, S33 ISU55_15985 PF16671 Actin cross-linking domain ISU55_15985 PF11647 Membrane Localization Domain ISU55_15985 PF11713 Peptidase C80 family ISU55_15995 PF11101 Protein of unknown function (DUF2884) ISU55_16000 PF11101 Protein of unknown function (DUF2884) ISU55_16005 PF04960 Glutaminase ISU55_16010 PF04320 Protein with unknown function (DUF469) ISU55_16015 PF02390 Putative methyltransferase ISU55_16020 PF00730 HhH-GPD superfamily base excision DNA repair protein ISU55_16020 PF14815 NUDIX domain ISU55_16020 PF10576 Iron-sulfur binding domain of endonuclease III ISU55_16020 PF00633 Helix-hairpin-helix motif ISU55_16025 PF04362 Bacterial Fe(2+) trafficking ISU55_16030 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain ISU55_16030 PF01464 Transglycosylase SLT domain ISU55_16040 PF07715 TonB-dependent Receptor Plug Domain ISU55_16045 PF02653 Branched-chain amino acid transport system / permease component ISU55_16050 PF00005 ABC transporter ISU55_16055 PF13407 Periplasmic binding protein domain ISU55_16060 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain ISU55_16060 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain ISU55_16060 PF01276 Orn/Lys/Arg decarboxylase, major domain ISU55_16120 PF13296 Putative type VI secretion system Rhs element Vgr ISU55_16120 PF04717 Type VI secretion system, phage-baseplate injector ISU55_16120 PF10106 Uncharacterized protein conserved in bacteria (DUF2345) ISU55_16125 PF07724 AAA domain (Cdc48 subfamily) ISU55_16125 PF17871 AAA lid domain ISU55_16125 PF10431 C-terminal, D2-small domain, of ClpB protein ISU55_16125 PF00004 ATPase family associated with various cellular activities (AAA) ISU55_16135 PF05736 OprF membrane domain ISU55_16135 PF00691 OmpA family ISU55_16150 PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath ISU55_16170 PF02517 CPBP intramembrane metalloprotease ISU55_16175 PF00765 Autoinducer synthase ISU55_16180 PF00196 Bacterial regulatory proteins, luxR family ISU55_16180 PF03472 Autoinducer binding domain ISU55_16215 PF06276 Ferric iron reductase FhuF-like transporter ISU55_16215 PF04183 IucA / IucC family ISU55_16220 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) ISU55_16225 PF00593 TonB dependent receptor ISU55_16225 PF07715 TonB-dependent Receptor Plug Domain ISU55_16240 PF08448 PAS fold ISU55_16240 PF00990 Diguanylate cyclase, GGDEF domain ISU55_16240 PF08447 PAS fold ISU55_16240 PF00563 EAL domain ISU55_16250 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion ISU55_16250 PF00529 HlyD membrane-fusion protein of T1SS ISU55_16255 PF00873 AcrB/AcrD/AcrF family ISU55_16260 PF07906 ShET2 enterotoxin, N-terminal region ISU55_16270 PF03797 Autotransporter beta-domain ISU55_16275 PF12468 Type III secretion system leucine rich repeat protein ISU55_16275 PF14496 C-terminal novel E3 ligase, LRR-interacting ISU55_16285 PF12468 Type III secretion system leucine rich repeat protein ISU55_16285 PF14496 C-terminal novel E3 ligase, LRR-interacting ISU55_16285 PF12468 Type III secretion system leucine rich repeat protein ISU55_16285 PF14496 C-terminal novel E3 ligase, LRR-interacting ISU55_16290 PF12468 Type III secretion system leucine rich repeat protein ISU55_16290 PF14496 C-terminal novel E3 ligase, LRR-interacting ISU55_16295 PF03806 AbgT putative transporter family ISU55_16300 PF07687 Peptidase dimerisation domain ISU55_16300 PF01546 Peptidase family M20/M25/M40 ISU55_16305 PF00593 TonB dependent receptor ISU55_16305 PF07715 TonB-dependent Receptor Plug Domain ISU55_16315 PF02796 Helix-turn-helix domain of resolvase ISU55_16315 PF00665 Integrase core domain ISU55_16320 PF01695 IstB-like ATP binding protein ISU55_16325 PF00550 Phosphopantetheine attachment site ISU55_16325 PF00501 AMP-binding enzyme ISU55_16325 PF00668 Condensation domain ISU55_16325 PF08242 Methyltransferase domain ISU55_16330 PF13193 AMP-binding enzyme C-terminal domain ISU55_16330 PF00501 AMP-binding enzyme ISU55_16330 PF00668 Condensation domain ISU55_16335 PF00501 AMP-binding enzyme ISU55_16335 PF00668 Condensation domain ISU55_16335 PF08242 Methyltransferase domain ISU55_16335 PF00550 Phosphopantetheine attachment site ISU55_16350 PF00975 Thioesterase domain ISU55_16360 PF04954 Siderophore-interacting protein ISU55_16360 PF08021 Siderophore-interacting FAD-binding domain ISU55_16360 PF00664 ABC transporter transmembrane region ISU55_16360 PF00005 ABC transporter ISU55_16365 PF00005 ABC transporter ISU55_16365 PF00664 ABC transporter transmembrane region ISU55_16380 PF02447 GntP family permease ISU55_16390 PF12951 Passenger-associated-transport-repeat ISU55_16395 PF04717 Type VI secretion system, phage-baseplate injector ISU55_16405 PF03527 RHS protein ISU55_16405 PF05593 RHS Repeat ISU55_16420 PF00939 Sodium:sulfate symporter transmembrane region ISU55_16425 PF00356 Bacterial regulatory proteins, lacI family ISU55_16440 PF00700 Bacterial flagellin C-terminal helical region ISU55_16440 PF00669 Bacterial flagellin N-terminal helical region ISU55_16445 PF00486 Transcriptional regulatory protein, C terminal ISU55_16445 PF18500 CadC C-terminal domain 1 ISU55_16465 PF06429 Flagellar basal body rod FlgEFG protein C-terminal ISU55_16465 PF00460 Flagella basal body rod protein ISU55_16475 PF02119 Flagellar P-ring protein ISU55_16480 PF02107 Flagellar L-ring protein ISU55_16485 PF00460 Flagella basal body rod protein ISU55_16485 PF06429 Flagellar basal body rod FlgEFG protein C-terminal ISU55_16490 PF00460 Flagella basal body rod protein ISU55_16490 PF06429 Flagellar basal body rod FlgEFG protein C-terminal ISU55_16495 PF00460 Flagella basal body rod protein ISU55_16495 PF07559 Flagellar basal body protein FlaE ISU55_16495 PF06429 Flagellar basal body rod FlgEFG protein C-terminal ISU55_16500 PF13860 FlgD Ig-like domain ISU55_16500 PF13861 FlgD Tudor-like domain ISU55_16500 PF03963 Flagellar hook capping protein - N-terminal region ISU55_16505 PF06429 Flagellar basal body rod FlgEFG protein C-terminal ISU55_16505 PF00460 Flagella basal body rod protein ISU55_16510 PF00460 Flagella basal body rod protein ISU55_16515 PF13144 Chaperone for flagella basal body P-ring formation ISU55_16535 PF18269 T3SS EscN ATPase C-terminal domain ISU55_16535 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain ISU55_16550 PF01514 Secretory protein of YscJ/FliF family ISU55_16550 PF08345 Flagellar M-ring protein C-terminal ISU55_16555 PF02049 Flagellar hook-basal body complex protein FliE ISU55_16560 PF02954 Bacterial regulatory protein, Fis family ISU55_16560 PF00072 Response regulator receiver domain ISU55_16560 PF00158 Sigma-54 interaction domain ISU55_16570 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term ISU55_16575 PF00813 FliP family ISU55_16580 PF01313 Bacterial export proteins, family 3 ISU55_16585 PF01311 Bacterial export proteins, family 1 ISU55_16590 PF01312 FlhB HrpN YscU SpaS Family ISU55_16610 PF01497 Periplasmic binding protein ISU55_16615 PF00419 Fimbrial protein ISU55_16615 PF09222 Fimbrial adhesin F17-AG, lectin domain ISU55_16620 PF02753 Pili assembly chaperone PapD, C-terminal domain ISU55_16620 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain ISU55_16625 PF13953 PapC C-terminal domain ISU55_16625 PF00577 Outer membrane usher protein ISU55_16625 PF13954 PapC N-terminal domain ISU55_16630 PF01797 Transposase IS200 like ISU55_16645 PF13629 Pilus formation protein N terminal region ISU55_16645 PF00263 Bacterial type II and III secretion system protein ISU55_16645 PF04972 BON domain ISU55_16650 PF04972 BON domain ISU55_16650 PF00263 Bacterial type II and III secretion system protein ISU55_16650 PF13629 Pilus formation protein N terminal region ISU55_16665 PF00437 Type II/IV secretion system protein ISU55_16700 PF02472 Biopolymer transport protein ExbD/TolR ISU55_16705 PF01618 MotA/TolQ/ExbB proton channel family ISU55_16710 PF01053 Cys/Met metabolism PLP-dependent enzyme ISU55_16715 PF09335 SNARE associated Golgi protein ISU55_16720 PF06719 AraC-type transcriptional regulator N-terminus ISU55_16720 PF12833 Helix-turn-helix domain ISU55_16725 PF00465 Iron-containing alcohol dehydrogenase ISU55_16735 PF00248 Aldo/keto reductase family ISU55_16745 PF07731 Multicopper oxidase ISU55_16745 PF07732 Multicopper oxidase ISU55_16750 PF01553 Acyltransferase ISU55_16755 PF00521 DNA gyrase/topoisomerase IV, subunit A ISU55_16755 PF03989 DNA gyrase C-terminal domain, beta-propeller ISU55_16770 PF03466 LysR substrate binding domain ISU55_16770 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ISU55_16775 PF00204 DNA gyrase B ISU55_16775 PF00986 DNA gyrase B subunit, carboxyl terminus ISU55_16775 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ISU55_16775 PF01751 Toprim domain ISU55_16780 PF05728 Uncharacterised protein family (UPF0227) ISU55_16785 PF00149 Calcineurin-like phosphoesterase ISU55_16790 PF06853 Protein of unknown function (DUF1249) ISU55_16795 PF00293 NUDIX domain ISU55_16800 PF02321 Outer membrane efflux protein ISU55_16805 PF06693 Protein of unknown function (DUF1190) ISU55_16810 PF03738 Glutathionylspermidine synthase preATP-grasp ISU55_16815 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase ISU55_16820 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase ISU55_16825 PF04380 Membrane fusogenic activity ISU55_16835 PF13520 Amino acid permease ISU55_16840 PF01467 Cytidylyltransferase-like ISU55_16840 PF00294 pfkB family carbohydrate kinase ISU55_16845 PF03710 Glutamate-ammonia ligase adenylyltransferase ISU55_16845 PF08335 GlnD PII-uridylyltransferase ISU55_16850 PF01928 CYTH domain ISU55_16855 PF08239 Bacterial SH3 domain ISU55_16860 PF12627 Probable RNA and SrmB- binding site of polymerase A ISU55_16860 PF01966 HD domain ISU55_16860 PF01743 Poly A polymerase head domain ISU55_16865 PF02673 Bacitracin resistance protein BacA ISU55_16870 PF02152 Dihydroneopterin aldolase ISU55_16875 PF02660 Glycerol-3-phosphate acyltransferase ISU55_16880 PF00814 Glycoprotease family ISU55_16885 PF01165 Ribosomal protein S21 ISU55_16890 PF08278 DNA primase DnaG DnaB-binding ISU55_16890 PF10410 DnaB-helicase binding domain of primase ISU55_16890 PF01807 CHC2 zinc finger ISU55_16890 PF08275 DNA primase catalytic core, N-terminal domain ISU55_16895 PF00140 Sigma-70 factor, region 1.2 ISU55_16895 PF03979 Sigma-70 factor, region 1.1 ISU55_16895 PF04546 Sigma-70, non-essential region ISU55_16895 PF04539 Sigma-70 region 3 ISU55_16895 PF04542 Sigma-70 region 2 ISU55_16895 PF04545 Sigma-70, region 4 ISU55_16905 PF02796 Helix-turn-helix domain of resolvase ISU55_16905 PF00665 Integrase core domain ISU55_16910 PF01695 IstB-like ATP binding protein ISU55_16950 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ISU55_16950 PF03466 LysR substrate binding domain ISU55_16970 PF01042 Endoribonuclease L-PSP ISU55_16990 PF00155 Aminotransferase class I and II ISU55_17005 PF00529 HlyD membrane-fusion protein of T1SS ISU55_17005 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion ISU55_17010 PF04632 Fusaric acid resistance protein family ISU55_17020 PF14310 Fibronectin type III-like domain ISU55_17020 PF00933 Glycosyl hydrolase family 3 N terminal domain ISU55_17020 PF01915 Glycosyl hydrolase family 3 C-terminal domain ISU55_17030 PF00528 Binding-protein-dependent transport system inner membrane component ISU55_17035 PF00528 Binding-protein-dependent transport system inner membrane component ISU55_17040 PF01547 Bacterial extracellular solute-binding protein ISU55_17045 PF00356 Bacterial regulatory proteins, lacI family ISU55_17050 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain ISU55_17055 PF00005 ABC transporter ISU55_17055 PF03459 TOBE domain ISU55_17055 PF17912 MalK OB fold domain ISU55_17075 PF04829 Pre-toxin domain with VENN motif ISU55_17075 PF05860 haemagglutination activity domain ISU55_17075 PF13018 Extended Signal Peptide of Type V secretion system ISU55_17075 PF13332 Hemagglutinin repeat ISU55_17080 PF04829 Pre-toxin domain with VENN motif ISU55_17080 PF13018 Extended Signal Peptide of Type V secretion system ISU55_17080 PF13332 Hemagglutinin repeat ISU55_17080 PF05860 haemagglutination activity domain ISU55_17095 PF13332 Hemagglutinin repeat ISU55_17095 PF04829 Pre-toxin domain with VENN motif ISU55_17100 PF13332 Hemagglutinin repeat ISU55_17100 PF04829 Pre-toxin domain with VENN motif ISU55_17110 PF04829 Pre-toxin domain with VENN motif ISU55_17110 PF05860 haemagglutination activity domain ISU55_17110 PF13332 Hemagglutinin repeat ISU55_17110 PF13018 Extended Signal Peptide of Type V secretion system ISU55_17115 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB ISU55_17115 PF17287 POTRA domain ISU55_17115 PF08479 POTRA domain, ShlB-type ISU55_17120 PF00092 von Willebrand factor type A domain ISU55_17125 PF02342 TerD domain ISU55_17135 PF00092 von Willebrand factor type A domain ISU55_17150 PF03729 Short repeat of unknown function (DUF308) ISU55_17155 PF07992 Pyridine nucleotide-disulphide oxidoreductase ISU55_17155 PF00724 NADH:flavin oxidoreductase / NADH oxidase family ISU55_17160 PF05175 Methyltransferase small domain ISU55_17165 PF03797 Autotransporter beta-domain ISU55_17170 PF01863 Protein of unknown function DUF45 ISU55_17175 PF01408 Oxidoreductase family, NAD-binding Rossmann fold ISU55_17180 PF00375 Sodium:dicarboxylate symporter family ISU55_17185 PF01797 Transposase IS200 like ISU55_17190 PF10688 Bacterial inner membrane protein ISU55_17195 PF08666 SAF domain ISU55_17195 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus ISU55_17200 PF08125 Mannitol dehydrogenase C-terminal domain ISU55_17200 PF01232 Mannitol dehydrogenase Rossmann domain ISU55_17205 PF02614 Glucuronate isomerase ISU55_17215 PF07690 Major Facilitator Superfamily ISU55_17220 PF07729 FCD domain ISU55_17220 PF00392 Bacterial regulatory proteins, gntR family ISU55_17230 PF09335 SNARE associated Golgi protein ISU55_17235 PF13721 SecD export protein N-terminal TM region ISU55_17245 PF05957 Bacterial protein of unknown function (DUF883) ISU55_17250 PF07332 Putative Actinobacterial Holin-X, holin superfamily III ISU55_17260 PF07681 DoxX ISU55_17270 PF02796 Helix-turn-helix domain of resolvase ISU55_17270 PF00665 Integrase core domain ISU55_17275 PF01695 IstB-like ATP binding protein ISU55_17280 PF00293 NUDIX domain ISU55_17290 PF02810 SEC-C motif ISU55_17290 PF07516 SecA Wing and Scaffold domain ISU55_17290 PF07517 SecA DEAD-like domain ISU55_17290 PF01043 SecA preprotein cross-linking domain ISU55_17295 PF06558 Secretion monitor precursor protein (SecM) ISU55_17305 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase ISU55_17310 PF12327 FtsZ family, C-terminal domain ISU55_17310 PF00091 Tubulin/FtsZ family, GTPase domain ISU55_17315 PF02491 SHS2 domain inserted in FTSA ISU55_17320 PF08478 POTRA domain, FtsQ-type ISU55_17320 PF03799 Cell division protein FtsQ ISU55_17325 PF01820 D-ala D-ala ligase N-terminus ISU55_17325 PF07478 D-ala D-ala ligase C-terminus ISU55_17330 PF08245 Mur ligase middle domain ISU55_17330 PF01225 Mur ligase family, catalytic domain ISU55_17330 PF02875 Mur ligase family, glutamate ligase domain ISU55_17335 PF04101 Glycosyltransferase family 28 C-terminal domain ISU55_17335 PF03033 Glycosyltransferase family 28 N-terminal domain ISU55_17340 PF01098 Cell cycle protein ISU55_17345 PF08245 Mur ligase middle domain ISU55_17345 PF02875 Mur ligase family, glutamate ligase domain ISU55_17350 PF00953 Glycosyl transferase family 4 ISU55_17350 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 ISU55_17355 PF08245 Mur ligase middle domain ISU55_17355 PF02875 Mur ligase family, glutamate ligase domain ISU55_17355 PF01225 Mur ligase family, catalytic domain ISU55_17360 PF08245 Mur ligase middle domain ISU55_17360 PF01225 Mur ligase family, catalytic domain ISU55_17360 PF02875 Mur ligase family, glutamate ligase domain ISU55_17365 PF00905 Penicillin binding protein transpeptidase domain ISU55_17365 PF03717 Penicillin-binding Protein dimerisation domain ISU55_17370 PF04999 Cell division protein FtsL ISU55_17375 PF01795 MraW methylase family ISU55_17380 PF02381 MraZ protein, putative antitoxin-like ISU55_17390 PF06610 L-alanine exporter ISU55_17395 PF00356 Bacterial regulatory proteins, lacI family ISU55_17395 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family ISU55_17400 PF01797 Transposase IS200 like ISU55_17405 PF10369 Small subunit of acetolactate synthase ISU55_17410 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain ISU55_17410 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain ISU55_17410 PF00205 Thiamine pyrophosphate enzyme, central domain ISU55_17415 PF00501 AMP-binding enzyme ISU55_17420 PF03466 LysR substrate binding domain ISU55_17420 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ISU55_17430 PF01797 Transposase IS200 like ISU55_17435 PF08502 LeuA allosteric (dimerisation) domain ISU55_17435 PF00682 HMGL-like ISU55_17440 PF00180 Isocitrate/isopropylmalate dehydrogenase ISU55_17445 PF00330 Aconitase family (aconitate hydratase) ISU55_17450 PF00694 Aconitase C-terminal domain ISU55_17455 PF07690 Major Facilitator Superfamily ISU55_17460 PF12793 Sugar transport-related sRNA regulator N-term ISU55_17460 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle ISU55_17470 PF00528 Binding-protein-dependent transport system inner membrane component ISU55_17475 PF00005 ABC transporter ISU55_17480 PF09335 SNARE associated Golgi protein ISU55_17485 PF03104 DNA polymerase family B, exonuclease domain ISU55_17485 PF00136 DNA polymerase family B ISU55_17490 PF12137 RNA polymerase recycling family C-terminal ISU55_17490 PF00271 Helicase conserved C-terminal domain ISU55_17490 PF18337 RapA N-terminal Tudor like domain ISU55_17490 PF18339 RapA N-terminal Tudor like domain 1 ISU55_17490 PF00176 SNF2 family N-terminal domain ISU55_17505 PF05736 OprF membrane domain ISU55_17505 PF00691 OmpA family ISU55_17510 PF05936 Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE ISU55_17540 PF06715 Gp5 C-terminal repeat (3 copies) ISU55_17540 PF04717 Type VI secretion system, phage-baseplate injector ISU55_17545 PF07724 AAA domain (Cdc48 subfamily) ISU55_17545 PF00004 ATPase family associated with various cellular activities (AAA) ISU55_17545 PF17871 AAA lid domain ISU55_17545 PF10431 C-terminal, D2-small domain, of ClpB protein ISU55_17555 PF05947 Type VI secretion system, TssF ISU55_17570 PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath ISU55_17575 PF05591 Type VI secretion system, VipA, VC_A0107 or Hcp2 ISU55_17590 PF00849 RNA pseudouridylate synthase ISU55_17595 PF00226 DnaJ domain ISU55_17595 PF05099 Tellurite resistance protein TerB ISU55_17600 PF04453 LPS transport system D ISU55_17600 PF03968 OstA-like protein ISU55_17605 PF09312 SurA N-terminal domain ISU55_17605 PF00639 PPIC-type PPIASE domain ISU55_17610 PF04166 Pyridoxal phosphate biosynthetic protein PdxA ISU55_17615 PF00398 Ribosomal RNA adenine dimethylase ISU55_17620 PF04379 ApaG domain ISU55_17625 PF00149 Calcineurin-like phosphoesterase ISU55_17640 PF01797 Transposase IS200 like ISU55_17645 PF00186 Dihydrofolate reductase ISU55_17650 PF12821 Threonine/Serine exporter, ThrE ISU55_17655 PF06738 Putative threonine/serine exporter ISU55_17660 PF01810 LysE type translocator ISU55_17665 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain ISU55_17665 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain ISU55_17665 PF02142 MGS-like domain ISU55_17670 PF00117 Glutamine amidotransferase class-I ISU55_17670 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain ISU55_17675 PF01113 Dihydrodipicolinate reductase, N-terminus ISU55_17675 PF05173 Dihydrodipicolinate reductase, C-terminus ISU55_17680 PF01797 Transposase IS200 like ISU55_17685 PF02401 LytB protein ISU55_17690 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase ISU55_17695 PF01252 Signal peptidase (SPase) II ISU55_17700 PF06827 Zinc finger found in FPG and IleRS ISU55_17700 PF00133 tRNA synthetases class I (I, L, M and V) ISU55_17700 PF08264 Anticodon-binding domain of tRNA ISU55_17705 PF01687 Riboflavin kinase ISU55_17705 PF06574 FAD synthetase ISU55_17710 PF01649 Ribosomal protein S20 ISU55_17715 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ISU55_17715 PF03466 LysR substrate binding domain ISU55_17720 PF06965 Na+/H+ antiporter 1 ISU55_17725 PF00684 DnaJ central domain ISU55_17725 PF01556 DnaJ C terminal domain ISU55_17725 PF00226 DnaJ domain ISU55_17730 PF00012 Hsp70 protein ISU55_17735 PF01184 GPR1/FUN34/yaaH family ISU55_17745 PF07690 Major Facilitator Superfamily ISU55_17750 PF00994 Probable molybdopterin binding domain ISU55_17755 PF00923 Transaldolase/Fructose-6-phosphate aldolase ISU55_17765 PF03883 Peroxide stress protein YaaA ISU55_17770 PF00291 Pyridoxal-phosphate dependent enzyme ISU55_17770 PF14821 Threonine synthase N terminus ISU55_17775 PF08544 GHMP kinases C terminal ISU55_17775 PF00288 GHMP kinases N terminal domain ISU55_17780 PF00742 Homoserine dehydrogenase ISU55_17780 PF13840 ACT domain ISU55_17780 PF01842 ACT domain ISU55_17780 PF03447 Homoserine dehydrogenase, NAD binding domain ISU55_17780 PF00696 Amino acid kinase family ISU55_17785 PF08254 Threonine leader peptide ISU55_17790 PF00486 Transcriptional regulatory protein, C terminal ISU55_17790 PF00072 Response regulator receiver domain ISU55_17795 PF05981 CreA protein ISU55_17800 PF12833 Helix-turn-helix domain ISU55_17800 PF06445 GyrI-like small molecule binding domain ISU55_17805 PF00300 Histidine phosphatase superfamily (branch 1) ISU55_17810 PF01931 Protein of unknown function DUF84 ISU55_17815 PF01371 Trp repressor protein ISU55_17820 PF14718 Soluble lytic murein transglycosylase L domain ISU55_17820 PF01464 Transglycosylase SLT domain ISU55_17825 PF00690 Cation transporter/ATPase, N-terminus ISU55_17825 PF00689 Cation transporting ATPase, C-terminus ISU55_17835 PF17152 Periplasmic sensor domain ISU55_17835 PF00990 Diguanylate cyclase, GGDEF domain ISU55_17840 PF00691 OmpA family ISU55_17850 PF02661 Fic/DOC family ISU55_17855 PF01381 Helix-turn-helix ISU55_17855 PF13521 AAA domain ISU55_17860 PF18073 Rubredoxin metal binding domain ISU55_17865 PF18429 Domain of unknown function (DUF5609) ISU55_17870 PF10144 Bacterial virulence factor haemolysin ISU55_17875 PF01048 Phosphorylase superfamily ISU55_17880 PF01676 Metalloenzyme superfamily ISU55_17890 PF01791 DeoC/LacD family aldolase ISU55_17895 PF07662 Na+ dependent nucleoside transporter C-terminus ISU55_17895 PF01773 Na+ dependent nucleoside transporter N-terminus ISU55_17895 PF07670 Nucleoside recognition ISU55_17900 PF01026 TatD related DNase ISU55_17905 PF01734 Patatin-like phospholipase ISU55_17910 PF07043 Protein of unknown function (DUF1328) ISU55_17915 PF04972 BON domain ISU55_17920 PF03144 Elongation factor Tu domain 2 ISU55_17920 PF16658 Class II release factor RF3, C-terminal domain ISU55_17920 PF00009 Elongation factor Tu GTP binding domain ISU55_17925 PF00583 Acetyltransferase (GNAT) family ISU55_17930 PF03603 DNA polymerase III psi subunit ISU55_17935 PF08468 Methyltransferase small domain N-terminal ISU55_17935 PF05175 Methyltransferase small domain ISU55_17945 PF07256 Protein of unknown function (DUF1435) ISU55_17950 PF00990 Diguanylate cyclase, GGDEF domain ISU55_17955 PF01095 Pectinesterase ISU55_17970 PF00873 AcrB/AcrD/AcrF family ISU55_17975 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion ISU55_17990 PF01075 Glycosyltransferase family 9 (heptosyltransferase) ISU55_17995 PF00370 FGGY family of carbohydrate kinases, N-terminal domain ISU55_17995 PF02782 FGGY family of carbohydrate kinases, C-terminal domain ISU55_18010 PF00005 ABC transporter ISU55_18015 PF02653 Branched-chain amino acid transport system / permease component ISU55_18020 PF02653 Branched-chain amino acid transport system / permease component ISU55_18025 PF13407 Periplasmic binding protein domain ISU55_18030 PF01791 DeoC/LacD family aldolase ISU55_18035 PF03992 Antibiotic biosynthesis monooxygenase ISU55_18040 PF10696 Protein of unknown function (DUF2501) ISU55_18045 PF05524 PEP-utilising enzyme, N-terminal ISU55_18045 PF00391 PEP-utilising enzyme, mobile domain ISU55_18045 PF02896 PEP-utilising enzyme, TIM barrel domain ISU55_18045 PF00381 PTS HPr component phosphorylation site ISU55_18045 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 ISU55_18055 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit ISU55_18060 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit ISU55_18065 PF12833 Helix-turn-helix domain ISU55_18075 PF05987 Bacterial protein of unknown function (DUF898) ISU55_18115 PF01555 DNA methylase ISU55_18130 PF07728 AAA domain (dynein-related subfamily) ISU55_18130 PF12102 Domain of unknown function (DUF3578) ISU55_18135 PF02796 Helix-turn-helix domain of resolvase ISU55_18135 PF00665 Integrase core domain ISU55_18140 PF01695 IstB-like ATP binding protein ISU55_18145 PF02580 D-Tyr-tRNA(Tyr) deacylase ISU55_18150 PF03631 Virulence factor BrkB ISU55_18155 PF13419 Haloacid dehalogenase-like hydrolase ISU55_18160 PF00679 Elongation factor G C-terminus ISU55_18160 PF00009 Elongation factor Tu GTP binding domain ISU55_18160 PF03144 Elongation factor Tu domain 2 ISU55_18165 PF00120 Glutamine synthetase, catalytic domain ISU55_18165 PF03951 Glutamine synthetase, beta-Grasp domain ISU55_18170 PF00989 PAS fold ISU55_18170 PF00512 His Kinase A (phospho-acceptor) domain ISU55_18170 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ISU55_18175 PF00158 Sigma-54 interaction domain ISU55_18175 PF02954 Bacterial regulatory protein, Fis family ISU55_18175 PF00072 Response regulator receiver domain ISU55_18180 PF04055 Radical SAM superfamily ISU55_18180 PF06969 HemN C-terminal domain ISU55_18185 PF04220 Der GTPase activator (YihI) ISU55_18190 PF01926 50S ribosome-binding GTPase ISU55_18195 PF01797 Transposase IS200 like ISU55_18200 PF01797 Transposase IS200 like ISU55_18205 PF00476 DNA polymerase family A ISU55_18205 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain ISU55_18205 PF01367 5'-3' exonuclease, C-terminal SAM fold ISU55_18205 PF01612 3'-5' exonuclease ISU55_18210 PF01323 DSBA-like thioredoxin domain ISU55_18215 PF01636 Phosphotransferase enzyme family ISU55_18220 PF06288 Protein of unknown function (DUF1040) ISU55_18225 PF12804 MobA-like NTP transferase domain ISU55_18230 PF03205 Molybdopterin guanine dinucleotide synthesis protein B ISU55_18235 PF00872 Transposase, Mutator family ISU55_18260 PF01177 Asp/Glu/Hydantoin racemase ISU55_18265 PF07715 TonB-dependent Receptor Plug Domain ISU55_18265 PF00593 TonB dependent receptor ISU55_18270 PF05958 tRNA (Uracil-5-)-methyltransferase ISU55_18275 PF07226 Protein of unknown function (DUF1422) ISU55_18280 PF00440 Bacterial regulatory proteins, tetR family ISU55_18285 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain ISU55_18285 PF07992 Pyridine nucleotide-disulphide oxidoreductase ISU55_18290 PF03466 LysR substrate binding domain ISU55_18290 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ISU55_18295 PF08534 Redoxin ISU55_18295 PF00462 Glutaredoxin ISU55_18300 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain ISU55_18300 PF07992 Pyridine nucleotide-disulphide oxidoreductase ISU55_18305 PF03544 Gram-negative bacterial TonB protein C-terminal ISU55_18310 PF00529 HlyD membrane-fusion protein of T1SS ISU55_18315 PF00005 ABC transporter ISU55_18315 PF00664 ABC transporter transmembrane region ISU55_18325 PF00593 TonB dependent receptor ISU55_18325 PF07715 TonB-dependent Receptor Plug Domain ISU55_18330 PF14698 Argininosuccinate lyase C-terminal ISU55_18330 PF00206 Lyase ISU55_18335 PF00696 Amino acid kinase family ISU55_18340 PF02774 Semialdehyde dehydrogenase, dimerisation domain ISU55_18340 PF01118 Semialdehyde dehydrogenase, NAD binding domain ISU55_18345 PF07687 Peptidase dimerisation domain ISU55_18345 PF01546 Peptidase family M20/M25/M40 ISU55_18350 PF00311 Phosphoenolpyruvate carboxylase ISU55_18375 PF01266 FAD dependent oxidoreductase ISU55_18375 PF16901 C-terminal domain of alpha-glycerophosphate oxidase ISU55_18380 PF00343 Carbohydrate phosphorylase ISU55_18385 PF00534 Glycosyl transferases group 1 ISU55_18385 PF08323 Starch synthase catalytic domain ISU55_18390 PF00483 Nucleotidyl transferase ISU55_18395 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) ISU55_18395 PF18390 Glycogen debranching enzyme C-terminal domain ISU55_18395 PF00128 Alpha amylase, catalytic domain ISU55_18400 PF00128 Alpha amylase, catalytic domain ISU55_18400 PF02806 Alpha amylase, C-terminal all-beta domain ISU55_18400 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) ISU55_18405 PF06580 Histidine kinase ISU55_18405 PF07694 5TMR of 5TMR-LYT ISU55_18410 PF09134 Invasin, domain 3 ISU55_18410 PF07979 Intimin C-type lectin domain ISU55_18410 PF02369 Bacterial Ig-like domain (group 1) ISU55_18410 PF11924 Inverse autotransporter, beta-domain ISU55_18440 PF01118 Semialdehyde dehydrogenase, NAD binding domain ISU55_18440 PF02774 Semialdehyde dehydrogenase, dimerisation domain ISU55_18445 PF01914 MarC family integral membrane protein ISU55_18460 PF01202 Shikimate kinase ISU55_18465 PF02447 GntP family permease ISU55_18470 PF00356 Bacterial regulatory proteins, lacI family ISU55_18470 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family ISU55_18475 PF02678 Pirin ISU55_18475 PF17954 Quercetinase C-terminal cupin domain ISU55_18485 PF00072 Response regulator receiver domain ISU55_18485 PF00486 Transcriptional regulatory protein, C terminal ISU55_18495 PF01116 Fructose-bisphosphate aldolase class-II ISU55_18505 PF13407 Periplasmic binding protein domain ISU55_18510 PF02653 Branched-chain amino acid transport system / permease component ISU55_18515 PF00005 ABC transporter ISU55_18520 PF08448 PAS fold ISU55_18520 PF00072 Response regulator receiver domain ISU55_18520 PF13188 PAS domain ISU55_18520 PF00512 His Kinase A (phospho-acceptor) domain ISU55_18520 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ISU55_18530 PF01384 Phosphate transporter family ISU55_18535 PF01797 Transposase IS200 like ISU55_18540 PF10625 Universal stress protein B (UspB) ISU55_18545 PF00582 Universal stress protein family ISU55_18550 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain ISU55_18550 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase ISU55_18555 PF08548 Peptidase M10 serralysin C terminal ISU55_18555 PF00413 Matrixin ISU55_18555 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) ISU55_18560 PF04445 Putative SAM-dependent methyltransferase ISU55_18565 PF01432 Peptidase family M3 ISU55_18570 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ ISU55_18575 PF07992 Pyridine nucleotide-disulphide oxidoreductase ISU55_18575 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain ISU55_18580 PF17853 GGDEF-like domain ISU55_18580 PF13556 PucR C-terminal helix-turn-helix domain ISU55_18580 PF05651 Putative sugar diacid recognition ISU55_18590 PF02447 GntP family permease ISU55_18595 PF02595 Glycerate kinase family ISU55_18620 PF03631 Virulence factor BrkB ISU55_18625 PF02611 CDP-diacylglycerol pyrophosphatase ISU55_18630 PF05170 AsmA family ISU55_18635 PF00563 EAL domain ISU55_18640 PF01361 Tautomerase enzyme ISU55_18645 PF00294 pfkB family carbohydrate kinase ISU55_18650 PF05193 Peptidase M16 inactive domain ISU55_18650 PF00675 Insulinase (Peptidase family M16) ISU55_18655 PF00375 Sodium:dicarboxylate symporter family ISU55_18665 PF06917 Periplasmic pectate lyase ISU55_18670 PF06178 Oligogalacturonate-specific porin protein (KdgM) ISU55_18675 PF17154 Gammaproteobacterial periplasmic sensor domain ISU55_18675 PF00563 EAL domain ISU55_18675 PF00672 HAMP domain ISU55_18675 PF00990 Diguanylate cyclase, GGDEF domain ISU55_18680 PF01270 Glycosyl hydrolases family 8 ISU55_18685 PF00005 ABC transporter ISU55_18685 PF08352 Oligopeptide/dipeptide transporter, C-terminal region ISU55_18690 PF08352 Oligopeptide/dipeptide transporter, C-terminal region ISU55_18690 PF00005 ABC transporter ISU55_18695 PF12911 N-terminal TM domain of oligopeptide transport permease C ISU55_18695 PF00528 Binding-protein-dependent transport system inner membrane component ISU55_18700 PF00528 Binding-protein-dependent transport system inner membrane component ISU55_18705 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle ISU55_18710 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB ISU55_18710 PF08479 POTRA domain, ShlB-type ISU55_18710 PF17287 POTRA domain ISU55_18715 PF05594 Haemagluttinin repeat ISU55_18715 PF05860 haemagglutination activity domain ISU55_18715 PF13332 Hemagglutinin repeat ISU55_18715 PF04829 Pre-toxin domain with VENN motif ISU55_18725 PF07690 Major Facilitator Superfamily ISU55_18730 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ISU55_18730 PF07730 Histidine kinase ISU55_18730 PF05231 MASE1 ISU55_18735 PF01695 IstB-like ATP binding protein ISU55_18740 PF00665 Integrase core domain ISU55_18740 PF02796 Helix-turn-helix domain of resolvase ISU55_18745 PF00583 Acetyltransferase (GNAT) family ISU55_18745 PF09500 Putative thioesterase (yiiD_Cterm) ISU55_18750 PF05170 AsmA family ISU55_18755 PF00860 Permease family ISU55_18760 PF03616 Sodium/glutamate symporter ISU55_18770 PF17191 RecG wedge domain ISU55_18770 PF00271 Helicase conserved C-terminal domain ISU55_18770 PF00270 DEAD/DEAH box helicase ISU55_18775 PF12105 SpoU, rRNA methylase, C-terminal ISU55_18775 PF00588 SpoU rRNA Methylase family ISU55_18780 PF13291 ACT domain ISU55_18780 PF04607 Region found in RelA / SpoT proteins ISU55_18780 PF02824 TGS domain ISU55_18785 PF01192 RNA polymerase Rpb6 ISU55_18790 PF00625 Guanylate kinase ISU55_18795 PF01653 NAD-dependent DNA ligase adenylation domain ISU55_18795 PF03120 NAD-dependent DNA ligase OB-fold domain ISU55_18800 PF03458 UPF0126 domain ISU55_18805 PF08340 Domain of unknown function (DUF1732) ISU55_18805 PF03755 YicC-like family, N-terminal region ISU55_18810 PF03725 3' exoribonuclease family, domain 2 ISU55_18810 PF01138 3' exoribonuclease family, domain 1 ISU55_18815 PF00156 Phosphoribosyl transferase domain ISU55_18820 PF00440 Bacterial regulatory proteins, tetR family ISU55_18825 PF00692 dUTPase ISU55_18830 PF04127 DNA / pantothenate metabolism flavoprotein ISU55_18830 PF02441 Flavoprotein ISU55_18835 PF04002 RadC-like JAB domain ISU55_18840 PF00830 Ribosomal L28 family ISU55_18845 PF00471 Ribosomal protein L33 ISU55_18850 PF06827 Zinc finger found in FPG and IleRS ISU55_18850 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain ISU55_18850 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain ISU55_18855 PF01467 Cytidylyltransferase-like ISU55_18860 PF00535 Glycosyl transferase family 2 ISU55_18865 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) ISU55_18870 PF01075 Glycosyltransferase family 9 (heptosyltransferase) ISU55_18875 PF01075 Glycosyltransferase family 9 (heptosyltransferase) ISU55_18880 PF01370 NAD dependent epimerase/dehydratase family ISU55_18885 PF00155 Aminotransferase class I and II ISU55_18890 PF00107 Zinc-binding dehydrogenase ISU55_18890 PF08240 Alcohol dehydrogenase GroES-like domain ISU55_18900 PF01551 Peptidase family M23 ISU55_18905 PF01676 Metalloenzyme superfamily ISU55_18905 PF06415 BPG-independent PGAM N-terminus (iPGM_N) ISU55_18910 PF00581 Rhodanese-like domain ISU55_18915 PF00462 Glutaredoxin ISU55_18920 PF02556 Preprotein translocase subunit SecB ISU55_18925 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus ISU55_18925 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus ISU55_18930 PF00132 Bacterial transferase hexapeptide (six repeats) ISU55_18930 PF06426 Serine acetyltransferase, N-terminal ISU55_18935 PF00588 SpoU rRNA Methylase family ISU55_18940 PF02805 Metal binding domain of Ada ISU55_18940 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain ISU55_18940 PF12833 Helix-turn-helix domain ISU55_18940 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain ISU55_18945 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ISU55_18945 PF16527 Two-component sensor protein CpxA, periplasmic domain ISU55_18945 PF00512 His Kinase A (phospho-acceptor) domain ISU55_18945 PF00672 HAMP domain ISU55_18950 PF00072 Response regulator receiver domain ISU55_18950 PF00486 Transcriptional regulatory protein, C terminal ISU55_18955 PF07813 LTXXQ motif family protein ISU55_18965 PF04754 Putative transposase, YhgA-like ISU55_18970 PF16916 Dimerisation domain of Zinc Transporter ISU55_18970 PF01545 Cation efflux family ISU55_18975 PF00365 Phosphofructokinase ISU55_18990 PF00939 Sodium:sulfate symporter transmembrane region ISU55_18995 PF03737 Aldolase/RraA ISU55_19000 PF01695 IstB-like ATP binding protein ISU55_19005 PF00665 Integrase core domain ISU55_19005 PF02796 Helix-turn-helix domain of resolvase ISU55_19010 PF02585 GlcNAc-PI de-N-acetylase ISU55_19015 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ISU55_19015 PF03466 LysR substrate binding domain ISU55_19020 PF00121 Triosephosphate isomerase ISU55_19025 PF07305 Protein of unknown function (DUF1454) ISU55_19030 PF05656 Protein of unknown function (DUF805) ISU55_19035 PF00175 Oxidoreductase NAD-binding domain ISU55_19035 PF00970 Oxidoreductase FAD-binding domain ISU55_19040 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded ISU55_19045 PF00370 FGGY family of carbohydrate kinases, N-terminal domain ISU55_19045 PF02782 FGGY family of carbohydrate kinases, C-terminal domain ISU55_19050 PF00230 Major intrinsic protein ISU55_19055 PF06005 Cell division protein ZapB ISU55_19060 PF01797 Transposase IS200 like ISU55_19065 PF00664 ABC transporter transmembrane region ISU55_19065 PF00005 ABC transporter ISU55_19065 PF03412 Peptidase C39 family ISU55_19070 PF00529 HlyD membrane-fusion protein of T1SS ISU55_19070 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion ISU55_19085 PF03737 Aldolase/RraA ISU55_19090 PF01040 UbiA prenyltransferase family ISU55_19095 PF10431 C-terminal, D2-small domain, of ClpB protein ISU55_19095 PF00004 ATPase family associated with various cellular activities (AAA) ISU55_19095 PF07724 AAA domain (Cdc48 subfamily) ISU55_19100 PF00227 Proteasome subunit ISU55_19105 PF05036 Sporulation related domain ISU55_19110 PF00356 Bacterial regulatory proteins, lacI family ISU55_19115 PF18074 Primosomal protein N C-terminal domain ISU55_19115 PF00270 DEAD/DEAH box helicase ISU55_19115 PF17764 3′ DNA-binding domain (3′BD) ISU55_19115 PF18319 PriA DNA helicase Cys-rich region (CRR) domain ISU55_19115 PF00271 Helicase conserved C-terminal domain ISU55_19120 PF01197 Ribosomal protein L31 ISU55_19125 PF05360 yiaA/B two helix domain ISU55_19130 PF01340 Met Apo-repressor, MetJ ISU55_19140 PF03447 Homoserine dehydrogenase, NAD binding domain ISU55_19140 PF00742 Homoserine dehydrogenase ISU55_19140 PF00696 Amino acid kinase family ISU55_19145 PF02219 Methylenetetrahydrofolate reductase ISU55_19155 PF00455 DeoR C terminal sensor domain ISU55_19155 PF08220 DeoR-like helix-turn-helix domain ISU55_19160 PF01694 Rhomboid family ISU55_19160 PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease ISU55_19165 PF00581 Rhodanese-like domain ISU55_19170 PF00196 Bacterial regulatory proteins, luxR family ISU55_19170 PF17874 MalT-like TPR region ISU55_19175 PF00343 Carbohydrate phosphorylase ISU55_19180 PF00343 Carbohydrate phosphorylase ISU55_19185 PF02446 4-alpha-glucanotransferase ISU55_19190 PF01521 Iron-sulphur cluster biosynthesis ISU55_19190 PF01106 NifU-like domain ISU55_19195 PF00156 Phosphoribosyl transferase domain ISU55_19200 PF00561 alpha/beta hydrolase fold ISU55_19205 PF07338 Protein of unknown function (DUF1471) ISU55_19210 PF09012 FeoC like transcriptional regulator ISU55_19215 PF07664 Ferrous iron transport protein B C terminus ISU55_19215 PF07670 Nucleoside recognition ISU55_19215 PF17910 FeoB cytosolic helical domain ISU55_19215 PF02421 Ferrous iron transport protein B ISU55_19220 PF04023 FeoA domain ISU55_19225 PF00575 S1 RNA binding domain ISU55_19225 PF09371 Tex-like protein N-terminal domain ISU55_19225 PF17674 HHH domain ISU55_19225 PF16921 Tex protein YqgF-like domain ISU55_19230 PF01272 Transcription elongation factor, GreA/GreB, C-term ISU55_19230 PF03449 Transcription elongation factor, N-terminal ISU55_19235 PF00486 Transcriptional regulatory protein, C terminal ISU55_19235 PF00072 Response regulator receiver domain ISU55_19240 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ISU55_19240 PF00512 His Kinase A (phospho-acceptor) domain ISU55_19240 PF00672 HAMP domain ISU55_19245 PF01293 Phosphoenolpyruvate carboxykinase ISU55_19250 PF01430 Hsp33 protein ISU55_19255 PF01479 S4 domain ISU55_19260 PF13419 Haloacid dehalogenase-like hydrolase ISU55_19265 PF07095 Intracellular growth attenuator protein IgaA ISU55_19270 PF00293 NUDIX domain ISU55_19275 PF00905 Penicillin binding protein transpeptidase domain ISU55_19275 PF17092 Penicillin-binding protein OB-like domain ISU55_19275 PF00912 Transglycosylase ISU55_19300 PF03958 Bacterial type II/III secretion system short domain ISU55_19300 PF00263 Bacterial type II and III secretion system protein ISU55_19305 PF01202 Shikimate kinase ISU55_19310 PF01761 3-dehydroquinate synthase ISU55_19315 PF05036 Sporulation related domain ISU55_19320 PF02086 D12 class N6 adenine-specific DNA methyltransferase ISU55_19325 PF00834 Ribulose-phosphate 3 epimerase family ISU55_19330 PF13419 Haloacid dehalogenase-like hydrolase ISU55_19335 PF00579 tRNA synthetases class I (W and Y) ISU55_19340 PF14824 Sirohaem biosynthesis protein central ISU55_19340 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases ISU55_19340 PF10414 Sirohaem synthase dimerisation region ISU55_19345 PF01226 Formate/nitrite transporter ISU55_19350 PF13806 Rieske-like [2Fe-2S] domain ISU55_19355 PF18267 Rubredoxin NAD+ reductase C-terminal domain ISU55_19355 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain ISU55_19355 PF07992 Pyridine nucleotide-disulphide oxidoreductase ISU55_19355 PF04324 BFD-like [2Fe-2S] binding domain ISU55_19355 PF01077 Nitrite and sulphite reductase 4Fe-4S domain ISU55_19360 PF07969 Amidohydrolase family ISU55_19365 PF07690 Major Facilitator Superfamily ISU55_19375 PF00356 Bacterial regulatory proteins, lacI family ISU55_19385 PF00665 Integrase core domain ISU55_19385 PF02796 Helix-turn-helix domain of resolvase ISU55_19390 PF01695 IstB-like ATP binding protein ISU55_19400 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD ISU55_19405 PF05872 Bacterial protein of unknown function (DUF853) ISU55_19410 PF00117 Glutamine amidotransferase class-I ISU55_19415 PF00202 Aminotransferase class-III ISU55_19420 PF12805 FUSC-like inner membrane protein yccS ISU55_19425 PF13545 Crp-like helix-turn-helix domain ISU55_19425 PF00027 Cyclic nucleotide-binding domain ISU55_19430 PF02566 OsmC-like protein ISU55_19440 PF00485 Phosphoribulokinase / Uridine kinase family ISU55_19445 PF06794 Uncharacterised protein family (UPF0270) ISU55_19450 PF00561 alpha/beta hydrolase fold ISU55_19455 PF01810 LysE type translocator ISU55_19460 PF04069 Substrate binding domain of ABC-type glycine betaine transport system ISU55_19465 PF00005 ABC transporter ISU55_19470 PF00528 Binding-protein-dependent transport system inner membrane component ISU55_19475 PF02668 Taurine catabolism dioxygenase TauD, TfdA family ISU55_19485 PF00535 Glycosyl transferase family 2 ISU55_19495 PF02525 Flavodoxin-like fold ISU55_19500 PF02254 TrkA-N domain ISU55_19500 PF00999 Sodium/hydrogen exchanger family ISU55_19505 PF09526 Probable metal-binding protein (DUF2387) ISU55_19510 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase ISU55_19515 PF04102 SlyX ISU55_19520 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase ISU55_19520 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase ISU55_19525 PF08348 YheO-like PAS domain ISU55_19525 PF13309 HTH domain ISU55_19530 PF02635 DsrE/DsrF-like family ISU55_19535 PF02635 DsrE/DsrF-like family ISU55_19540 PF04077 DsrH like protein ISU55_19545 PF00164 Ribosomal protein S12/S23 ISU55_19550 PF00177 Ribosomal protein S7p/S5e ISU55_19555 PF14492 Elongation Factor G, domain II ISU55_19555 PF03764 Elongation factor G, domain IV ISU55_19555 PF03144 Elongation factor Tu domain 2 ISU55_19555 PF00679 Elongation factor G C-terminus ISU55_19555 PF00009 Elongation factor Tu GTP binding domain ISU55_19560 PF03143 Elongation factor Tu C-terminal domain ISU55_19560 PF00009 Elongation factor Tu GTP binding domain ISU55_19560 PF03144 Elongation factor Tu domain 2 ISU55_19565 PF01797 Transposase IS200 like ISU55_19570 PF04324 BFD-like [2Fe-2S] binding domain ISU55_19575 PF00210 Ferritin-like domain ISU55_19580 PF00338 Ribosomal protein S10p/S20e ISU55_19585 PF00297 Ribosomal protein L3 ISU55_19590 PF00573 Ribosomal protein L4/L1 family ISU55_19595 PF00276 Ribosomal protein L23 ISU55_19600 PF00181 Ribosomal Proteins L2, RNA binding domain ISU55_19600 PF03947 Ribosomal Proteins L2, C-terminal domain ISU55_19605 PF00203 Ribosomal protein S19 ISU55_19610 PF00237 Ribosomal protein L22p/L17e ISU55_19615 PF07650 KH domain ISU55_19615 PF00189 Ribosomal protein S3, C-terminal domain ISU55_19620 PF00252 Ribosomal protein L16p/L10e ISU55_19625 PF00831 Ribosomal L29 protein ISU55_19630 PF00366 Ribosomal protein S17 ISU55_19635 PF00238 Ribosomal protein L14p/L23e ISU55_19640 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 ISU55_19640 PF00467 KOW motif ISU55_19645 PF00281 Ribosomal protein L5 ISU55_19645 PF00673 ribosomal L5P family C-terminus ISU55_19650 PF00253 Ribosomal protein S14p/S29e ISU55_19655 PF00410 Ribosomal protein S8 ISU55_19660 PF00347 Ribosomal protein L6 ISU55_19665 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast ISU55_19670 PF00333 Ribosomal protein S5, N-terminal domain ISU55_19670 PF03719 Ribosomal protein S5, C-terminal domain ISU55_19675 PF00327 Ribosomal protein L30p/L7e ISU55_19680 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A ISU55_19685 PF00344 SecY translocase ISU55_19690 PF00444 Ribosomal protein L36 ISU55_19695 PF00416 Ribosomal protein S13/S18 ISU55_19700 PF00411 Ribosomal protein S11 ISU55_19705 PF01479 S4 domain ISU55_19705 PF00163 Ribosomal protein S4/S9 N-terminal domain ISU55_19710 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain ISU55_19710 PF01000 RNA polymerase Rpb3/RpoA insert domain ISU55_19710 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain ISU55_19715 PF01196 Ribosomal protein L17 ISU55_19720 PF13411 MerR HTH family regulatory protein ISU55_19725 PF03889 Alternative ribosome-rescue factor A ISU55_19730 PF01741 Large-conductance mechanosensitive channel, MscL ISU55_19735 PF02254 TrkA-N domain ISU55_19735 PF02080 TrkA-C domain ISU55_19740 PF01029 NusB family ISU55_19740 PF01189 16S rRNA methyltransferase RsmB/F ISU55_19745 PF02911 Formyl transferase, C-terminal domain ISU55_19745 PF00551 Formyl transferase ISU55_19750 PF01327 Polypeptide deformylase ISU55_19755 PF17782 DprA winged helix domain ISU55_19755 PF02481 DNA recombination-mediator protein A ISU55_19760 PF04361 Protein of unknown function (DUF494) ISU55_19765 PF01396 Topoisomerase DNA binding C4 zinc finger ISU55_19770 PF01300 Telomere recombination ISU55_19775 PF08501 Shikimate dehydrogenase substrate binding domain ISU55_19775 PF18317 Shikimate 5'-dehydrogenase C-terminal domain ISU55_19775 PF01488 Shikimate / quinate 5-dehydrogenase ISU55_19780 PF00132 Bacterial transferase hexapeptide (six repeats) ISU55_19785 PF01695 IstB-like ATP binding protein ISU55_19790 PF02796 Helix-turn-helix domain of resolvase ISU55_19790 PF00665 Integrase core domain ISU55_19800 PF00072 Response regulator receiver domain ISU55_19800 PF00196 Bacterial regulatory proteins, luxR family ISU55_19805 PF08019 Phosphoethanolamine transferase EptA/EptB ISU55_19805 PF00884 Sulfatase ISU55_19810 PF12146 Serine aminopeptidase, S33 ISU55_19815 PF00324 Amino acid permease ISU55_19820 PF00221 Aromatic amino acid lyase ISU55_19825 PF01175 Urocanase Rossmann-like domain ISU55_19825 PF17391 Urocanase N-terminal domain ISU55_19825 PF17392 Urocanase C-terminal domain ISU55_19830 PF00291 Pyridoxal-phosphate dependent enzyme ISU55_19835 PF00156 Phosphoribosyl transferase domain ISU55_19850 PF01497 Periplasmic binding protein ISU55_19855 PF01032 FecCD transport family ISU55_19860 PF01032 FecCD transport family ISU55_19865 PF00005 ABC transporter ISU55_19900 PF04606 Ogr/Delta-like zinc finger ISU55_19910 PF14659 Phage integrase, N-terminal SAM-like domain ISU55_19910 PF00589 Phage integrase family ISU55_19910 PF13356 Arm DNA-binding domain ISU55_19920 PF12833 Helix-turn-helix domain ISU55_19925 PF02653 Branched-chain amino acid transport system / permease component ISU55_19930 PF00005 ABC transporter ISU55_19935 PF13407 Periplasmic binding protein domain ISU55_19945 PF00370 FGGY family of carbohydrate kinases, N-terminal domain ISU55_19945 PF02782 FGGY family of carbohydrate kinases, C-terminal domain ISU55_19955 PF02753 Pili assembly chaperone PapD, C-terminal domain ISU55_19955 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain ISU55_19965 PF00419 Fimbrial protein ISU55_19970 PF01757 Acyltransferase family ISU55_19990 PF00665 Integrase core domain ISU55_19990 PF02796 Helix-turn-helix domain of resolvase ISU55_19995 PF01695 IstB-like ATP binding protein ISU55_20010 PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath ISU55_20020 PF05638 Type VI secretion system effector, Hcp ISU55_20030 PF07148 Maltose operon periplasmic protein precursor (MalM) ISU55_20035 PF02264 LamB porin ISU55_20040 PF00005 ABC transporter ISU55_20040 PF17912 MalK OB fold domain ISU55_20050 PF01547 Bacterial extracellular solute-binding protein ISU55_20055 PF00528 Binding-protein-dependent transport system inner membrane component ISU55_20055 PF14785 Maltose transport system permease protein MalF P2 domain ISU55_20060 PF00528 Binding-protein-dependent transport system inner membrane component ISU55_20065 PF06146 Phosphate-starvation-inducible E ISU55_20070 PF00342 Phosphoglucose isomerase ISU55_20075 PF01842 ACT domain ISU55_20075 PF00696 Amino acid kinase family ISU55_20080 PF08479 POTRA domain, ShlB-type ISU55_20080 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB ISU55_20080 PF17287 POTRA domain ISU55_20085 PF05860 haemagglutination activity domain ISU55_20085 PF13332 Hemagglutinin repeat ISU55_20090 PF02607 B12 binding domain ISU55_20090 PF02965 Vitamin B12 dependent methionine synthase, activation domain ISU55_20090 PF02310 B12 binding domain ISU55_20090 PF02574 Homocysteine S-methyltransferase ISU55_20090 PF00809 Pterin binding enzyme ISU55_20100 PF06315 Isocitrate dehydrogenase kinase/phosphatase (AceK) ISU55_20105 PF00463 Isocitrate lyase family ISU55_20110 PF01274 Malate synthase ISU55_20115 PF04204 Homoserine O-succinyltransferase ISU55_20150 PF07729 FCD domain ISU55_20150 PF00392 Bacterial regulatory proteins, gntR family ISU55_20155 PF07690 Major Facilitator Superfamily ISU55_20170 PF00294 pfkB family carbohydrate kinase ISU55_20175 PF05025 RbsD / FucU transport protein family ISU55_20180 PF02705 K+ potassium transporter ISU55_20185 PF12592 Protein of unknown function (DUF3763) ISU55_20185 PF07728 AAA domain (dynein-related subfamily) ISU55_20185 PF17868 AAA lid domain ISU55_20190 PF05762 VWA domain containing CoxE-like protein ISU55_20195 PF03590 Aspartate-ammonia ligase ISU55_20200 PF01037 Lrp/AsnC ligand binding domain ISU55_20205 PF00258 Flavodoxin ISU55_20210 PF13932 GidA associated domain ISU55_20210 PF01134 Glucose inhibited division protein A ISU55_20215 PF02527 rRNA small subunit methyltransferase G ISU55_20220 PF03899 ATP synthase I chain ISU55_20225 PF00119 ATP synthase A chain ISU55_20230 PF00137 ATP synthase subunit C ISU55_20235 PF00430 ATP synthase B/B' CF(0) ISU55_20240 PF00213 ATP synthase delta (OSCP) subunit ISU55_20245 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain ISU55_20245 PF00306 ATP synthase alpha/beta chain, C terminal domain ISU55_20245 PF02874 ATP synthase alpha/beta family, beta-barrel domain ISU55_20250 PF00231 ATP synthase ISU55_20255 PF02874 ATP synthase alpha/beta family, beta-barrel domain ISU55_20255 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain ISU55_20260 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain ISU55_20260 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain ISU55_20265 PF00132 Bacterial transferase hexapeptide (six repeats) ISU55_20265 PF12804 MobA-like NTP transferase domain ISU55_20270 PF01380 SIS domain ISU55_20275 PF12849 PBP superfamily domain ISU55_20280 PF00528 Binding-protein-dependent transport system inner membrane component ISU55_20285 PF00528 Binding-protein-dependent transport system inner membrane component ISU55_20290 PF00005 ABC transporter ISU55_20295 PF01895 PhoU domain ISU55_20305 PF00497 Bacterial extracellular solute-binding proteins, family 3 ISU55_20310 PF00528 Binding-protein-dependent transport system inner membrane component ISU55_20315 PF00528 Binding-protein-dependent transport system inner membrane component ISU55_20320 PF13419 Haloacid dehalogenase-like hydrolase ISU55_20330 PF00860 Permease family ISU55_20350 PF12241 Trans-2-enoyl-CoA reductase catalytic region ISU55_20350 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase ISU55_20350 PF07055 Enoyl reductase FAD binding domain ISU55_20355 PF10396 GTP-binding protein TrmE N-terminus ISU55_20355 PF01926 50S ribosome-binding GTPase ISU55_20355 PF12631 MnmE helical domain ISU55_20360 PF02096 60Kd inner membrane protein ISU55_20360 PF14849 YidC periplasmic domain ISU55_20365 PF01809 Putative membrane protein insertion efficiency factor ISU55_20370 PF00825 Ribonuclease P ISU55_20375 PF00468 Ribosomal protein L34