locus-tag class description AK38_1 PF02590 Predicted SPOUT methyltransferase AK38_10 PF02537 CrcB-like protein, Camphor Resistance (CrcB) AK38_100 PF08240 Alcohol dehydrogenase GroES-like domain AK38_100 PF00107 Zinc-binding dehydrogenase AK38_1000 PF02653 Branched-chain amino acid transport system / permease component AK38_1002 PF01370 NAD dependent epimerase/dehydratase family AK38_1003 PF01634 ATP phosphoribosyltransferase AK38_1003 PF08029 HisG, C-terminal domain AK38_1004 PF00815 Histidinol dehydrogenase AK38_1005 PF00155 Aminotransferase class I and II AK38_1006 PF00475 Imidazoleglycerol-phosphate dehydratase AK38_1007 PF00117 Glutamine amidotransferase class-I AK38_1008 PF00977 Histidine biosynthesis protein AK38_1009 PF00977 Histidine biosynthesis protein AK38_101 PF13407 Periplasmic binding protein domain AK38_1010 PF01502 Phosphoribosyl-AMP cyclohydrolase AK38_1010 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase AK38_1011 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AK38_1011 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain AK38_1012 PF00483 Nucleotidyl transferase AK38_1013 PF00483 Nucleotidyl transferase AK38_1014 PF06276 Ferric iron reductase FhuF-like transporter AK38_1014 PF04183 IucA / IucC family AK38_1015 PF00593 TonB dependent receptor AK38_1015 PF07660 Secretin and TonB N terminus short domain AK38_1015 PF07715 TonB-dependent Receptor Plug Domain AK38_1016 PF01497 Periplasmic binding protein AK38_1017 PF01032 FecCD transport family AK38_1018 PF01032 FecCD transport family AK38_1019 PF00005 ABC transporter AK38_102 PF00005 ABC transporter AK38_1020 PF06276 Ferric iron reductase FhuF-like transporter AK38_1020 PF04183 IucA / IucC family AK38_1022 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) AK38_1023 PF00282 Pyridoxal-dependent decarboxylase conserved domain AK38_1024 PF06276 Ferric iron reductase FhuF-like transporter AK38_1024 PF11575 FhuF 2Fe-2S C-terminal domain AK38_1025 PF03741 Integral membrane protein TerC family AK38_1025 PF00571 CBS domain AK38_1025 PF03471 Transporter associated domain AK38_1026 PF05170 AsmA family AK38_1027 PF00692 dUTPase AK38_1028 PF00485 Phosphoribulokinase / Uridine kinase family AK38_1029 PF10609 NUBPL iron-transfer P-loop NTPase AK38_103 PF02653 Branched-chain amino acid transport system / permease component AK38_1030 PF01588 Putative tRNA binding domain AK38_1030 PF09334 tRNA synthetases class I (M) AK38_1031 PF01797 Transposase IS200 like AK38_1032 PF02796 Helix-turn-helix domain of resolvase AK38_1032 PF00665 Integrase core domain AK38_1033 PF01695 IstB-like ATP binding protein AK38_1037 PF07690 Major Facilitator Superfamily AK38_1038 PF03788 LrgA family AK38_1039 PF04172 LrgB-like family AK38_104 PF00356 Bacterial regulatory proteins, lacI family AK38_1040 PF08211 Cytidine and deoxycytidylate deaminase zinc-binding region AK38_1040 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region AK38_1041 PF00390 Malic enzyme, N-terminal domain AK38_1041 PF03949 Malic enzyme, NAD binding domain AK38_1042 PF02698 DUF218 domain AK38_1043 PF02653 Branched-chain amino acid transport system / permease component AK38_1044 PF00005 ABC transporter AK38_1045 PF13407 Periplasmic binding protein domain AK38_1046 PF04235 Protein of unknown function (DUF418) AK38_1047 PF01227 GTP cyclohydrolase I AK38_1048 PF06779 Uncharacterised MFS-type transporter YbfB AK38_1049 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AK38_1049 PF03466 LysR substrate binding domain AK38_105 PF03466 LysR substrate binding domain AK38_105 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AK38_1050 PF08240 Alcohol dehydrogenase GroES-like domain AK38_1050 PF00107 Zinc-binding dehydrogenase AK38_1051 PF00756 Putative esterase AK38_1054 PF13533 Biotin-lipoyl like AK38_1055 PF00005 ABC transporter AK38_1057 PF03453 MoeA N-terminal region (domain I and II) AK38_1057 PF03454 MoeA C-terminal region (domain IV) AK38_1057 PF00994 Probable molybdopterin binding domain AK38_1058 PF00899 ThiF family AK38_1059 PF00872 Transposase, Mutator family AK38_106 PF00180 Isocitrate/isopropylmalate dehydrogenase AK38_1061 PF12848 ABC transporter AK38_1061 PF00005 ABC transporter AK38_107 PF02028 BCCT, betaine/carnitine/choline family transporter AK38_108 PF00848 Ring hydroxylating alpha subunit (catalytic domain) AK38_108 PF00355 Rieske [2Fe-2S] domain AK38_1080 PF17871 AAA lid domain AK38_1080 PF00004 ATPase family associated with various cellular activities (AAA) AK38_1080 PF07724 AAA domain (Cdc48 subfamily) AK38_1080 PF10431 C-terminal, D2-small domain, of ClpB protein AK38_1082 PF05736 OprF membrane domain AK38_1082 PF00691 OmpA family AK38_1088 PF00698 Acyl transferase domain AK38_1089 PF00550 Phosphopantetheine attachment site AK38_109 PF00970 Oxidoreductase FAD-binding domain AK38_109 PF00111 2Fe-2S iron-sulfur cluster binding domain AK38_109 PF00175 Oxidoreductase NAD-binding domain AK38_1092 PF00378 Enoyl-CoA hydratase/isomerase AK38_1094 PF01154 Hydroxymethylglutaryl-coenzyme A synthase N terminal AK38_1094 PF08540 Hydroxymethylglutaryl-coenzyme A synthase C terminal AK38_1096 PF02801 Beta-ketoacyl synthase, C-terminal domain AK38_1096 PF00109 Beta-ketoacyl synthase, N-terminal domain AK38_1097 PF07977 FabA-like domain AK38_11 PF00313 'Cold-shock' DNA-binding domain AK38_110 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB AK38_110 PF17287 POTRA domain AK38_110 PF08479 POTRA domain, ShlB-type AK38_1100 PF01565 FAD binding domain AK38_1100 PF08031 Berberine and berberine like AK38_1104 PF13610 DDE domain AK38_1106 PF04358 DsrC like protein AK38_1107 PF00708 Acylphosphatase AK38_1108 PF10672 S-adenosylmethionine-dependent methyltransferase AK38_1108 PF17785 PUA-like domain AK38_1109 PF08755 Hemimethylated DNA-binding protein YccV like AK38_111 PF13018 Extended Signal Peptide of Type V secretion system AK38_111 PF04829 Pre-toxin domain with VENN motif AK38_111 PF05860 haemagglutination activity domain AK38_111 PF13332 Hemagglutinin repeat AK38_1110 PF13380 CoA binding domain AK38_1111 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) AK38_1112 PF02142 MGS-like domain AK38_1113 PF13361 UvrD-like helicase C-terminal domain AK38_1113 PF12462 DNA helicase IV / RNA helicase N terminal AK38_1113 PF00580 UvrD/REP helicase N-terminal domain AK38_1114 PF03733 Inner membrane component domain AK38_1115 PF12805 FUSC-like inner membrane protein yccS AK38_1116 PF04993 TfoX N-terminal domain AK38_1116 PF04994 TfoX C-terminal domain AK38_1117 PF03846 Cell division inhibitor SulA AK38_1118 PF01389 OmpA-like transmembrane domain AK38_1118 PF00691 OmpA family AK38_1119 PF01797 Transposase IS200 like AK38_1120 PF17414 MatP C-terminal ribbon-helix-helix domain AK38_1120 PF06303 MatP N-terminal domain AK38_1121 PF05362 Lon protease (S16) C-terminal proteolytic domain AK38_1121 PF13654 AAA domain AK38_1122 PF07977 FabA-like domain AK38_1124 PF00109 Beta-ketoacyl synthase, N-terminal domain AK38_1124 PF02801 Beta-ketoacyl synthase, C-terminal domain AK38_1125 PF00665 Integrase core domain AK38_1125 PF02796 Helix-turn-helix domain of resolvase AK38_1127 PF01695 IstB-like ATP binding protein AK38_1128 PF00109 Beta-ketoacyl synthase, N-terminal domain AK38_1128 PF02801 Beta-ketoacyl synthase, C-terminal domain AK38_1129 PF01797 Transposase IS200 like AK38_1130 PF03886 ABC-type transport auxiliary lipoprotein component AK38_1131 PF02470 MlaD protein AK38_1132 PF04403 Paraquat-inducible protein A AK38_1133 PF00005 ABC transporter AK38_1133 PF16326 ABC transporter C-terminal domain AK38_1133 PF12848 ABC transporter AK38_1134 PF01170 Putative RNA methylase family UPF0020 AK38_1134 PF02926 THUMP domain AK38_1134 PF10672 S-adenosylmethionine-dependent methyltransferase AK38_1135 PF03473 MOSC domain AK38_1135 PF00111 2Fe-2S iron-sulfur cluster binding domain AK38_1135 PF03476 MOSC N-terminal beta barrel domain AK38_1136 PF07126 Cell-division protein ZapC AK38_1137 PF01180 Dihydroorotate dehydrogenase AK38_1138 PF01433 Peptidase family M1 domain AK38_1138 PF11940 Domain of unknown function (DUF3458) Ig-like fold AK38_1138 PF17432 Domain of unknown function (DUF3458_C) ARM repeats AK38_1139 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family AK38_1139 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain AK38_114 PF13018 Extended Signal Peptide of Type V secretion system AK38_114 PF13332 Hemagglutinin repeat AK38_114 PF05860 haemagglutination activity domain AK38_114 PF04829 Pre-toxin domain with VENN motif AK38_1140 PF01336 OB-fold nucleic acid binding domain AK38_1140 PF00152 tRNA synthetases class II (D, K and N) AK38_1141 PF00267 Gram-negative porin AK38_1142 PF00155 Aminotransferase class I and II AK38_1143 PF00753 Metallo-beta-lactamase superfamily AK38_1144 PF05951 Bacterial protein of unknown function (DUF882) AK38_1145 PF01471 Putative peptidoglycan binding domain AK38_1145 PF03734 L,D-transpeptidase catalytic domain AK38_1146 PF01797 Transposase IS200 like AK38_1147 PF04310 MukB N-terminal AK38_1147 PF16330 MukB hinge domain AK38_1148 PF04288 MukE-like family AK38_1149 PF03882 MukF winged-helix domain AK38_1149 PF17192 MukF middle domain AK38_1149 PF17193 MukF C-terminal domain AK38_1150 PF13847 Methyltransferase domain AK38_1151 PF01636 Phosphotransferase enzyme family AK38_1152 PF02348 Cytidylyltransferase AK38_1153 PF03966 Trm112p-like protein AK38_1154 PF00313 'Cold-shock' DNA-binding domain AK38_1155 PF07063 Domain of unknown function (DUF1338) AK38_1156 PF02606 Tetraacyldisaccharide-1-P 4'-kinase AK38_1157 PF00005 ABC transporter AK38_1157 PF00664 ABC transporter transmembrane region AK38_1158 PF03772 Competence protein AK38_1158 PF00753 Metallo-beta-lactamase superfamily AK38_1159 PF00216 Bacterial DNA-binding protein AK38_1161 PF00575 S1 RNA binding domain AK38_1162 PF02224 Cytidylate kinase AK38_1163 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) AK38_1164 PF00266 Aminotransferase class-V AK38_1166 PF05658 Head domain of trimeric autotransporter adhesin AK38_1166 PF13018 Extended Signal Peptide of Type V secretion system AK38_1166 PF03895 YadA-like membrane anchor domain AK38_1166 PF05662 Coiled stalk of trimeric autotransporter adhesin AK38_1166 PF13018 Extended Signal Peptide of Type V secretion system AK38_1166 PF05658 Head domain of trimeric autotransporter adhesin AK38_1166 PF03895 YadA-like membrane anchor domain AK38_1166 PF05662 Coiled stalk of trimeric autotransporter adhesin AK38_1167 PF17763 Glutaminase/Asparaginase C-terminal domain AK38_1167 PF00710 Asparaginase, N-terminal AK38_1168 PF18381 YcaO cyclodehydratase C-terminal domain AK38_1168 PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding AK38_1169 PF01226 Formate/nitrite transporter AK38_117 PF15526 Novel toxin 21 AK38_117 PF04829 Pre-toxin domain with VENN motif AK38_117 PF05594 Haemagluttinin repeat AK38_117 PF13332 Hemagglutinin repeat AK38_117 PF05860 haemagglutination activity domain AK38_1170 PF01228 Glycine radical AK38_1170 PF02901 Pyruvate formate lyase-like AK38_1172 PF04055 Radical SAM superfamily AK38_1173 PF07690 Major Facilitator Superfamily AK38_1174 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AK38_1174 PF02403 Seryl-tRNA synthetase N-terminal domain AK38_1175 PF16193 AAA C-terminal domain AK38_1175 PF12002 MgsA AAA+ ATPase C terminal AK38_1175 PF00004 ATPase family associated with various cellular activities (AAA) AK38_1177 PF03548 Outer membrane lipoprotein carrier protein LolA AK38_1178 PF09397 Ftsk gamma domain AK38_1178 PF01580 FtsK/SpoIIIE family AK38_1178 PF17854 FtsK alpha domain AK38_1178 PF13491 4TM region of DNA translocase FtsK/SpoIIIE AK38_1179 PF01037 Lrp/AsnC ligand binding domain AK38_1180 PF07992 Pyridine nucleotide-disulphide oxidoreductase AK38_1181 PF00664 ABC transporter transmembrane region AK38_1181 PF00005 ABC transporter AK38_1182 PF00664 ABC transporter transmembrane region AK38_1182 PF00005 ABC transporter AK38_1183 PF03588 Leucyl/phenylalanyl-tRNA protein transferase AK38_1184 PF01176 Translation initiation factor 1A / IF-1 AK38_1185 PF01797 Transposase IS200 like AK38_1186 PF00004 ATPase family associated with various cellular activities (AAA) AK38_1186 PF10431 C-terminal, D2-small domain, of ClpB protein AK38_1186 PF17871 AAA lid domain AK38_1186 PF07724 AAA domain (Cdc48 subfamily) AK38_1186 PF02861 Clp amino terminal domain, pathogenicity island component AK38_1187 PF02617 ATP-dependent Clp protease adaptor protein ClpS AK38_1188 PF00313 'Cold-shock' DNA-binding domain AK38_1189 PF02687 FtsX-like permease family AK38_1189 PF12704 MacB-like periplasmic core domain AK38_1189 PF00005 ABC transporter AK38_119 PF00005 ABC transporter AK38_119 PF17912 MalK OB fold domain AK38_1190 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AK38_1191 PF04393 Protein of unknown function (DUF535) AK38_1192 PF11398 Protein of unknown function (DUF2813) AK38_1193 PF03956 Lysine exporter LysO AK38_1194 PF03063 Prismane/CO dehydrogenase family AK38_1195 PF00175 Oxidoreductase NAD-binding domain AK38_1195 PF00111 2Fe-2S iron-sulfur cluster binding domain AK38_1195 PF00970 Oxidoreductase FAD-binding domain AK38_1196 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AK38_1196 PF00205 Thiamine pyrophosphate enzyme, central domain AK38_1196 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AK38_1197 PF01212 Beta-eliminating lyase AK38_1198 PF11066 Protein of unknown function (DUF2867) AK38_1198 PF13460 NAD(P)H-binding AK38_1199 PF01370 NAD dependent epimerase/dehydratase family AK38_120 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I AK38_120 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain AK38_120 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II AK38_120 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III AK38_1200 PF12883 Protein of unknown function (DUF3828) AK38_1201 PF01817 Chorismate mutase type II AK38_1202 PF00005 ABC transporter AK38_1203 PF00497 Bacterial extracellular solute-binding proteins, family 3 AK38_1204 PF00528 Binding-protein-dependent transport system inner membrane component AK38_1205 PF00528 Binding-protein-dependent transport system inner membrane component AK38_1206 PF00892 EamA-like transporter family AK38_1207 PF10100 Staphylopine dehydrogenase AK38_1208 PF03059 Nicotianamine synthase protein AK38_1209 PF00005 ABC transporter AK38_121 PF00356 Bacterial regulatory proteins, lacI family AK38_1210 PF01032 FecCD transport family AK38_1215 PF00497 Bacterial extracellular solute-binding proteins, family 3 AK38_1216 PF01695 IstB-like ATP binding protein AK38_1217 PF02796 Helix-turn-helix domain of resolvase AK38_1217 PF00665 Integrase core domain AK38_1218 PF00497 Bacterial extracellular solute-binding proteins, family 3 AK38_1219 PF05958 tRNA (Uracil-5-)-methyltransferase AK38_1220 PF10767 Protein of unknown function (DUF2593) AK38_1221 PF00528 Binding-protein-dependent transport system inner membrane component AK38_1222 PF00528 Binding-protein-dependent transport system inner membrane component AK38_1223 PF00005 ABC transporter AK38_1223 PF08402 TOBE domain AK38_1224 PF13416 Bacterial extracellular solute-binding protein AK38_1225 PF10722 Putative bacterial sensory transduction regulator AK38_1226 PF07214 Protein of unknown function (DUF1418) AK38_1227 PF00462 Glutaredoxin AK38_1228 PF02080 TrkA-C domain AK38_1228 PF06826 Predicted Permease Membrane Region AK38_123 PF00528 Binding-protein-dependent transport system inner membrane component AK38_1230 PF01569 PAP2 superfamily AK38_1231 PF01791 DeoC/LacD family aldolase AK38_1232 PF08220 DeoR-like helix-turn-helix domain AK38_1232 PF00455 DeoR C terminal sensor domain AK38_1234 PF07943 Penicillin-binding protein 5, C-terminal domain AK38_1234 PF00768 D-alanyl-D-alanine carboxypeptidase AK38_1235 PF00528 Binding-protein-dependent transport system inner membrane component AK38_1236 PF09383 NIL domain AK38_1236 PF00005 ABC transporter AK38_1237 PF03180 NLPA lipoprotein AK38_124 PF00528 Binding-protein-dependent transport system inner membrane component AK38_1240 PF13417 Glutathione S-transferase, N-terminal domain AK38_1240 PF00043 Glutathione S-transferase, C-terminal domain AK38_1241 PF00593 TonB dependent receptor AK38_1241 PF07715 TonB-dependent Receptor Plug Domain AK38_1242 PF00005 ABC transporter AK38_1243 PF01032 FecCD transport family AK38_1245 PF00324 Amino acid permease AK38_1247 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AK38_1247 PF03466 LysR substrate binding domain AK38_1248 PF03601 Conserved hypothetical protein 698 AK38_1249 PF01261 Xylose isomerase-like TIM barrel AK38_125 PF04041 beta-1,4-mannooligosaccharide phosphorylase AK38_1250 PF13953 PapC C-terminal domain AK38_1250 PF13954 PapC N-terminal domain AK38_1250 PF00577 Outer membrane usher protein AK38_1251 PF02753 Pili assembly chaperone PapD, C-terminal domain AK38_1251 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain AK38_1253 PF17550 Family of unknown function AK38_1254 PF00486 Transcriptional regulatory protein, C terminal AK38_1255 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit AK38_1255 PF02378 Phosphotransferase system, EIIC AK38_1256 PF00294 pfkB family carbohydrate kinase AK38_1257 PF00381 PTS HPr component phosphorylation site AK38_1257 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 AK38_1258 PF00293 NUDIX domain AK38_1259 PF02653 Branched-chain amino acid transport system / permease component AK38_1260 PF00005 ABC transporter AK38_1262 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) AK38_1263 PF00370 FGGY family of carbohydrate kinases, N-terminal domain AK38_1263 PF02782 FGGY family of carbohydrate kinases, C-terminal domain AK38_1264 PF00171 Aldehyde dehydrogenase family AK38_1266 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AK38_1266 PF01842 ACT domain AK38_1266 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AK38_1268 PF03692 Putative zinc- or iron-chelating domain AK38_1269 PF03222 Tryptophan/tyrosine permease family AK38_1270 PF08207 Elongation factor P (EF-P) KOW-like domain AK38_1270 PF01132 Elongation factor P (EF-P) OB domain AK38_1270 PF09285 Elongation factor P, C-terminal AK38_1271 PF03786 D-mannonate dehydratase (UxuA) AK38_1272 PF01232 Mannitol dehydrogenase Rossmann domain AK38_1272 PF08125 Mannitol dehydrogenase C-terminal domain AK38_1273 PF00392 Bacterial regulatory proteins, gntR family AK38_1273 PF07729 FCD domain AK38_1275 PF02492 CobW/HypB/UreG, nucleotide-binding domain AK38_1275 PF07683 Cobalamin synthesis protein cobW C-terminal domain AK38_1276 PF01569 PAP2 superfamily AK38_1277 PF00877 NlpC/P60 family AK38_1279 PF00563 EAL domain AK38_1279 PF12792 CSS motif domain associated with EAL AK38_1280 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AK38_1281 PF00528 Binding-protein-dependent transport system inner membrane component AK38_1282 PF12911 N-terminal TM domain of oligopeptide transport permease C AK38_1282 PF00528 Binding-protein-dependent transport system inner membrane component AK38_1283 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AK38_1283 PF00005 ABC transporter AK38_1284 PF13989 YejG-like protein AK38_1285 PF07690 Major Facilitator Superfamily AK38_1286 PF00849 RNA pseudouridylate synthase AK38_1286 PF01479 S4 domain AK38_1287 PF00271 Helicase conserved C-terminal domain AK38_1287 PF04851 Type III restriction enzyme, res subunit AK38_1288 PF01386 Ribosomal L25p family AK38_1289 PF01797 Transposase IS200 like AK38_129 PF00924 Mechanosensitive ion channel AK38_1290 PF04245 37-kD nucleoid-associated bacterial protein AK38_1291 PF07208 Protein of unknown function (DUF1414) AK38_1292 PF00884 Sulfatase AK38_1292 PF11893 Domain of unknown function (DUF3413) AK38_1295 PF05638 Type VI secretion system effector, Hcp AK38_1299 PF00232 Glycosyl hydrolase family 1 AK38_13 PF00196 Bacterial regulatory proteins, luxR family AK38_130 PF01867 CRISPR associated protein Cas1 AK38_1301 PF01418 Helix-turn-helix domain, rpiR family AK38_1301 PF01380 SIS domain AK38_1302 PF07484 Phage Tail Collar Domain AK38_1305 PF04865 Baseplate J-like protein AK38_1313 PF17482 Phage tail sheath C-terminal domain AK38_1313 PF04984 Phage tail sheath protein subtilisin-like domain AK38_1317 PF01261 Xylose isomerase-like TIM barrel AK38_1318 PF08220 DeoR-like helix-turn-helix domain AK38_1318 PF00455 DeoR C terminal sensor domain AK38_1319 PF00596 Class II Aldolase and Adducin N-terminal domain AK38_132 PF09611 CRISPR-associated protein (Cas_Csy1) AK38_1320 PF07005 Sugar-binding N-terminal domain AK38_1320 PF17042 Nucleotide-binding C-terminal domain AK38_1321 PF06530 Phage antitermination protein Q AK38_1322 PF01381 Helix-turn-helix AK38_1322 PF00717 Peptidase S24-like AK38_1323 PF06183 DinI-like family AK38_1324 PF01278 Omptin family AK38_1325 PF02743 Cache domain AK38_1325 PF00672 HAMP domain AK38_1325 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AK38_1326 PF12706 Beta-lactamase superfamily domain AK38_1328 PF00144 Beta-lactamase AK38_133 PF09614 CRISPR-associated protein (Cas_Csy2) AK38_1331 PF01797 Transposase IS200 like AK38_1332 PF01797 Transposase IS200 like AK38_1333 PF00267 Gram-negative porin AK38_1335 PF07690 Major Facilitator Superfamily AK38_1336 PF16359 RcsD-ABL domain AK38_1336 PF01627 Hpt domain AK38_1336 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AK38_1337 PF16359 RcsD-ABL domain AK38_1337 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AK38_1337 PF01627 Hpt domain AK38_1338 PF00072 Response regulator receiver domain AK38_1338 PF00196 Bacterial regulatory proteins, luxR family AK38_1339 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AK38_1339 PF00512 His Kinase A (phospho-acceptor) domain AK38_1339 PF09456 RcsC Alpha-Beta-Loop (ABL) AK38_1339 PF00072 Response regulator receiver domain AK38_134 PF09615 CRISPR-associated protein (Cas_Csy3) AK38_1340 PF03989 DNA gyrase C-terminal domain, beta-propeller AK38_1340 PF00521 DNA gyrase/topoisomerase IV, subunit A AK38_1342 PF00317 Ribonucleotide reductase, all-alpha domain AK38_1342 PF02867 Ribonucleotide reductase, barrel domain AK38_1342 PF03477 ATP cone domain AK38_1343 PF00268 Ribonucleotide reductase, small chain AK38_1344 PF00111 2Fe-2S iron-sulfur cluster binding domain AK38_1345 PF03974 Ecotin AK38_1346 PF00994 Probable molybdopterin binding domain AK38_1347 PF03222 Tryptophan/tyrosine permease family AK38_1348 PF07437 YfaZ precursor AK38_1349 PF06628 Catalase-related immune-responsive AK38_1349 PF00199 Catalase AK38_135 PF09618 CRISPR-associated protein (Cas_Csy4) AK38_1350 PF06733 DEAD_2 AK38_1350 PF13307 Helicase C-terminal domain AK38_1351 PF00267 Gram-negative porin AK38_1352 PF00892 EamA-like transporter family AK38_1354 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain AK38_1354 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain AK38_1354 PF01276 Orn/Lys/Arg decarboxylase, major domain AK38_1355 PF13520 Amino acid permease AK38_1356 PF00528 Binding-protein-dependent transport system inner membrane component AK38_1357 PF00005 ABC transporter AK38_1358 PF00528 Binding-protein-dependent transport system inner membrane component AK38_136 PF00248 Aldo/keto reductase family AK38_1361 PF00581 Rhodanese-like domain AK38_1364 PF00005 ABC transporter AK38_1365 PF00005 ABC transporter AK38_1366 PF02653 Branched-chain amino acid transport system / permease component AK38_1367 PF02653 Branched-chain amino acid transport system / permease component AK38_1368 PF02954 Bacterial regulatory protein, Fis family AK38_1368 PF13188 PAS domain AK38_1368 PF00158 Sigma-54 interaction domain AK38_1369 PF07308 Protein of unknown function (DUF1456) AK38_1370 PF00528 Binding-protein-dependent transport system inner membrane component AK38_1371 PF00528 Binding-protein-dependent transport system inner membrane component AK38_1373 PF00005 ABC transporter AK38_1374 PF04226 Transglycosylase associated protein AK38_1376 PF01844 HNH endonuclease AK38_1377 PF01928 CYTH domain AK38_1378 PF01565 FAD binding domain AK38_1378 PF09330 D-lactate dehydrogenase, membrane binding AK38_1379 PF00768 D-alanyl-D-alanine carboxypeptidase AK38_138 PF00083 Sugar (and other) transporter AK38_1381 PF01207 Dihydrouridine synthase (Dus) AK38_1383 PF01797 Transposase IS200 like AK38_1384 PF03825 Nucleoside H+ symporter AK38_1385 PF01048 Phosphorylase superfamily AK38_1387 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AK38_1387 PF03466 LysR substrate binding domain AK38_1388 PF02028 BCCT, betaine/carnitine/choline family transporter AK38_1389 PF13977 BetI-type transcriptional repressor, C-terminal AK38_1389 PF00440 Bacterial regulatory proteins, tetR family AK38_1390 PF00171 Aldehyde dehydrogenase family AK38_1391 PF05199 GMC oxidoreductase AK38_1391 PF00732 GMC oxidoreductase AK38_1392 PF01797 Transposase IS200 like AK38_1393 PF01027 Inhibitor of apoptosis-promoting Bax1 AK38_1394 PF02391 MoaE protein AK38_1395 PF02597 ThiS family AK38_1396 PF01967 MoaC family AK38_1397 PF06463 Molybdenum Cofactor Synthesis C AK38_1397 PF04055 Radical SAM superfamily AK38_1399 PF01933 Uncharacterised protein family UPF0052 AK38_140 PF03466 LysR substrate binding domain AK38_140 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AK38_1400 PF09905 DNA-binding protein VF530 AK38_1401 PF12344 Ultra-violet resistance protein B AK38_1401 PF17757 UvrB interaction domain AK38_1401 PF02151 UvrB/uvrC motif AK38_1401 PF00271 Helicase conserved C-terminal domain AK38_1401 PF04851 Type III restriction enzyme, res subunit AK38_1402 PF00005 ABC transporter AK38_1402 PF09383 NIL domain AK38_1404 PF08241 Methyltransferase domain AK38_1405 PF00155 Aminotransferase class I and II AK38_1406 PF04055 Radical SAM superfamily AK38_1406 PF06968 Biotin and Thiamin Synthesis associated domain AK38_1407 PF00202 Aminotransferase class-III AK38_1408 PF10282 Lactonase, 7-bladed beta-propeller AK38_141 PF00765 Autoinducer synthase AK38_1410 PF00005 ABC transporter AK38_1410 PF03459 TOBE domain AK38_1411 PF00528 Binding-protein-dependent transport system inner membrane component AK38_1413 PF10766 Multidrug efflux pump-associated protein AcrZ AK38_1414 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AK38_1414 PF03459 TOBE domain AK38_1415 PF00005 ABC transporter AK38_1418 PF16363 GDP-mannose 4,6 dehydratase AK38_1419 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain AK38_1419 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain AK38_142 PF00196 Bacterial regulatory proteins, luxR family AK38_142 PF03472 Autoinducer binding domain AK38_1420 PF00288 GHMP kinases N terminal domain AK38_1420 PF10509 Galactokinase galactose-binding signature AK38_1420 PF08544 GHMP kinases C terminal AK38_1422 PF01263 Aldose 1-epimerase AK38_1424 PF00300 Histidine phosphatase superfamily (branch 1) AK38_1425 PF00665 Integrase core domain AK38_1425 PF02796 Helix-turn-helix domain of resolvase AK38_1426 PF01695 IstB-like ATP binding protein AK38_1427 PF00793 DAHP synthetase I family AK38_1429 PF01545 Cation efflux family AK38_1430 PF04973 Nicotinamide mononucleotide transporter AK38_1431 PF02445 Quinolinate synthetase A protein AK38_1435 PF13174 Tetratricopeptide repeat AK38_1435 PF16331 TolA binding protein trimerisation AK38_1436 PF00691 OmpA family AK38_1437 PF04052 TolB amino-terminal domain AK38_1437 PF07676 WD40-like Beta Propeller Repeat AK38_1438 PF06519 TolA C-terminal AK38_1438 PF06519 TolA C-terminal AK38_1439 PF02472 Biopolymer transport protein ExbD/TolR AK38_1440 PF01618 MotA/TolQ/ExbB proton channel family AK38_1441 PF03061 Thioesterase superfamily AK38_1442 PF09600 Cyd operon protein YbgE (Cyd_oper_YbgE) AK38_1443 PF08173 Membrane bound YbgT-like protein AK38_1444 PF02322 Cytochrome bd terminal oxidase subunit II AK38_1445 PF01654 Cytochrome bd terminal oxidase subunit I AK38_1446 PF02629 CoA binding domain AK38_1446 PF00549 CoA-ligase AK38_1447 PF08442 ATP-grasp domain AK38_1447 PF00549 CoA-ligase AK38_1448 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) AK38_1448 PF00364 Biotin-requiring enzyme AK38_1448 PF02817 e3 binding domain AK38_1449 PF16870 2-oxoglutarate dehydrogenase C-terminal AK38_1449 PF00676 Dehydrogenase E1 component AK38_1449 PF02779 Transketolase, pyrimidine binding domain AK38_1449 PF16078 2-oxoglutarate dehydrogenase N-terminus AK38_1450 PF13085 2Fe-2S iron-sulfur cluster binding domain AK38_1451 PF00890 FAD binding domain AK38_1451 PF02910 Fumarate reductase flavoprotein C-term AK38_1452 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit AK38_1453 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit AK38_1454 PF00285 Citrate synthase, C-terminal domain AK38_1455 PF01025 GrpE AK38_1456 PF01513 ATP-NAD kinase AK38_1457 PF02463 RecF/RecN/SMC N terminal domain AK38_1458 PF04355 SmpA / OmlA family AK38_1459 PF03658 RnfH family Ubiquitin AK38_146 PF01594 AI-2E family transporter AK38_1460 PF03364 Polyketide cyclase / dehydrase and lipid transport AK38_1461 PF01668 SmpB protein AK38_1462 PF01797 Transposase IS200 like AK38_1463 PF00589 Phage integrase family AK38_1463 PF13356 Arm DNA-binding domain AK38_147 PF00196 Bacterial regulatory proteins, luxR family AK38_1473 PF05973 Phage derived protein Gp49-like (DUF891) AK38_1475 PF02796 Helix-turn-helix domain of resolvase AK38_1475 PF00665 Integrase core domain AK38_1477 PF01695 IstB-like ATP binding protein AK38_148 PF01266 FAD dependent oxidoreductase AK38_1480 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin AK38_1482 PF00929 Exonuclease AK38_1483 PF00075 RNase H AK38_1484 PF08241 Methyltransferase domain AK38_1485 PF00753 Metallo-beta-lactamase superfamily AK38_1485 PF16123 Hydroxyacylglutathione hydrolase C-terminus AK38_1486 PF01476 LysM domain AK38_1486 PF01464 Transglycosylase SLT domain AK38_1487 PF03372 Endonuclease/Exonuclease/phosphatase family AK38_1489 PF00248 Aldo/keto reductase family AK38_149 PF00872 Transposase, Mutator family AK38_1496 PF09383 NIL domain AK38_1496 PF00005 ABC transporter AK38_1497 PF00528 Binding-protein-dependent transport system inner membrane component AK38_1498 PF03180 NLPA lipoprotein AK38_1499 PF16358 RcsF lipoprotein AK38_150 PF13419 Haloacid dehalogenase-like hydrolase AK38_1500 PF18389 TrmO C-terminal domain AK38_1500 PF01980 tRNA-methyltransferase O AK38_1501 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AK38_1501 PF03129 Anticodon binding domain AK38_1501 PF04073 Aminoacyl-tRNA editing domain AK38_1502 PF04170 NlpE N-terminal domain AK38_1502 PF17185 NlpE C-terminal OB domain AK38_1503 PF00472 RF-1 domain AK38_1504 PF07152 YaeQ protein AK38_1505 PF06786 Uncharacterised protein family (UPF0253) AK38_1506 PF07073 Modulator of Rho-dependent transcription termination (ROF) AK38_1507 PF00034 Cytochrome c AK38_1508 PF09179 TilS substrate binding domain AK38_1508 PF01171 PP-loop family AK38_1508 PF11734 TilS substrate C-terminal domain AK38_1509 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AK38_151 PF14002 YniB-like protein AK38_1510 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit AK38_1511 PF02811 PHP domain AK38_1511 PF07733 Bacterial DNA polymerase III alpha NTPase domain AK38_1511 PF17657 Bacterial DNA polymerase III alpha subunit finger domain AK38_1511 PF14579 Helix-hairpin-helix motif AK38_1511 PF01336 OB-fold nucleic acid binding domain AK38_1512 PF01351 Ribonuclease HII AK38_1513 PF02684 Lipid-A-disaccharide synthetase AK38_1514 PF00132 Bacterial transferase hexapeptide (six repeats) AK38_1514 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 AK38_1515 PF07977 FabA-like domain AK38_1516 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD AK38_1516 PF00132 Bacterial transferase hexapeptide (six repeats) AK38_1517 PF03938 Outer membrane protein (OmpH-like) AK38_1518 PF01103 Surface antigen AK38_1518 PF07244 Surface antigen variable number repeat AK38_1519 PF17820 PDZ domain AK38_1519 PF02163 Peptidase family M50 AK38_152 PF03881 Fructosamine kinase AK38_1521 PF01255 Putative undecaprenyl diphosphate synthase AK38_1522 PF13288 DXP reductoisomerase C-terminal domain AK38_1522 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase AK38_1522 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain AK38_1523 PF01765 Ribosome recycling factor AK38_1524 PF00696 Amino acid kinase family AK38_1525 PF00889 Elongation factor TS AK38_1526 PF00318 Ribosomal protein S2 AK38_1527 PF00557 Metallopeptidase family M24 AK38_1528 PF01966 HD domain AK38_1528 PF08335 GlnD PII-uridylyltransferase AK38_1528 PF01842 ACT domain AK38_1528 PF01909 Nucleotidyltransferase domain AK38_1529 PF14602 Hexapeptide repeat of succinyl-transferase AK38_1529 PF00132 Bacterial transferase hexapeptide (six repeats) AK38_1529 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal AK38_153 PF00950 ABC 3 transport family AK38_1530 PF11944 Protein of unknown function (DUF3461) AK38_1531 PF00258 Flavodoxin AK38_1532 PF00849 RNA pseudouridylate synthase AK38_1533 PF04287 tRNA pseudouridine synthase C AK38_1534 PF01797 Transposase IS200 like AK38_1535 PF07348 Syd protein (SUKH-2) AK38_1536 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term AK38_1536 PF14489 QueF-like protein AK38_1537 PF11892 Domain of unknown function (DUF3412) AK38_1537 PF03641 Possible lysine decarboxylase AK38_1537 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases AK38_1538 PF01367 5'-3' exonuclease, C-terminal SAM fold AK38_1538 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain AK38_1539 PF18125 RlmM ferredoxin-like domain AK38_1539 PF01728 FtsJ-like methyltransferase AK38_154 PF00950 ABC 3 transport family AK38_1540 PF04241 Protein of unknown function (DUF423) AK38_1541 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AK38_1541 PF03466 LysR substrate binding domain AK38_1543 PF00266 Aminotransferase class-V AK38_1544 PF02657 Fe-S metabolism associated domain AK38_1545 PF00899 ThiF family AK38_1546 PF03562 MltA specific insert domain AK38_1546 PF06725 3D domain AK38_1549 PF11741 AMIN domain AK38_1549 PF01520 N-acetylmuramoyl-L-alanine amidase AK38_155 PF00005 ABC transporter AK38_1550 PF00696 Amino acid kinase family AK38_1550 PF00583 Acetyltransferase (GNAT) family AK38_1551 PF13538 UvrD-like helicase C-terminal domain AK38_1552 PF12705 PD-(D/E)XK nuclease superfamily AK38_1552 PF00580 UvrD/REP helicase N-terminal domain AK38_1552 PF13361 UvrD-like helicase C-terminal domain AK38_1553 PF00675 Insulinase (Peptidase family M16) AK38_1553 PF05193 Peptidase M16 inactive domain AK38_1553 PF16187 Middle or third domain of peptidase_M16 AK38_1554 PF17946 RecC C-terminal domain AK38_1558 PF01695 IstB-like ATP binding protein AK38_1559 PF02796 Helix-turn-helix domain of resolvase AK38_1559 PF00665 Integrase core domain AK38_156 PF01297 Zinc-uptake complex component A periplasmic AK38_1560 PF16197 Ketoacyl-synthetase C-terminal extension AK38_1560 PF00202 Aminotransferase class-III AK38_1560 PF00501 AMP-binding enzyme AK38_1560 PF13193 AMP-binding enzyme C-terminal domain AK38_1560 PF00668 Condensation domain AK38_1560 PF00109 Beta-ketoacyl synthase, N-terminal domain AK38_1560 PF02801 Beta-ketoacyl synthase, C-terminal domain AK38_1560 PF00550 Phosphopantetheine attachment site AK38_1561 PF07715 TonB-dependent Receptor Plug Domain AK38_1561 PF00593 TonB dependent receptor AK38_1562 PF07687 Peptidase dimerisation domain AK38_1562 PF01546 Peptidase family M20/M25/M40 AK38_1563 PF03806 AbgT putative transporter family AK38_1564 PF12468 Type III secretion system leucine rich repeat protein AK38_1564 PF14496 C-terminal novel E3 ligase, LRR-interacting AK38_1565 PF12468 Type III secretion system leucine rich repeat protein AK38_1565 PF14496 C-terminal novel E3 ligase, LRR-interacting AK38_1565 PF14496 C-terminal novel E3 ligase, LRR-interacting AK38_1565 PF12468 Type III secretion system leucine rich repeat protein AK38_1566 PF12468 Type III secretion system leucine rich repeat protein AK38_1566 PF14496 C-terminal novel E3 ligase, LRR-interacting AK38_1567 PF03797 Autotransporter beta-domain AK38_1569 PF07906 ShET2 enterotoxin, N-terminal region AK38_157 PF01464 Transglycosylase SLT domain AK38_1570 PF00873 AcrB/AcrD/AcrF family AK38_1571 PF00529 HlyD membrane-fusion protein of T1SS AK38_1571 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AK38_1573 PF00563 EAL domain AK38_1573 PF00990 Diguanylate cyclase, GGDEF domain AK38_1573 PF08448 PAS fold AK38_1573 PF08447 PAS fold AK38_1574 PF13333 Integrase core domain AK38_1574 PF00665 Integrase core domain AK38_1574 PF13276 HTH-like domain AK38_1577 PF00593 TonB dependent receptor AK38_1577 PF07715 TonB-dependent Receptor Plug Domain AK38_1578 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) AK38_1579 PF04183 IucA / IucC family AK38_1579 PF06276 Ferric iron reductase FhuF-like transporter AK38_158 PF01914 MarC family integral membrane protein AK38_1581 PF06276 Ferric iron reductase FhuF-like transporter AK38_1581 PF04183 IucA / IucC family AK38_1582 PF06276 Ferric iron reductase FhuF-like transporter AK38_1582 PF04183 IucA / IucC family AK38_1586 PF00765 Autoinducer synthase AK38_1587 PF03472 Autoinducer binding domain AK38_1587 PF00196 Bacterial regulatory proteins, luxR family AK38_1589 PF02517 CPBP intramembrane metalloprotease AK38_1591 PF12759 InsA C-terminal domain AK38_1591 PF03811 InsA N-terminal domain AK38_1598 PF00691 OmpA family AK38_1598 PF05736 OprF membrane domain AK38_160 PF13619 KTSC domain AK38_1600 PF00004 ATPase family associated with various cellular activities (AAA) AK38_1600 PF10431 C-terminal, D2-small domain, of ClpB protein AK38_1600 PF07724 AAA domain (Cdc48 subfamily) AK38_1600 PF17871 AAA lid domain AK38_1603 PF12759 InsA C-terminal domain AK38_1603 PF03811 InsA N-terminal domain AK38_1607 PF03811 InsA N-terminal domain AK38_1607 PF12759 InsA C-terminal domain AK38_1608 PF03400 IS1 transposase AK38_161 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AK38_161 PF02824 TGS domain AK38_161 PF03129 Anticodon binding domain AK38_161 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain AK38_1610 PF00589 Phage integrase family AK38_1610 PF02899 Phage integrase, N-terminal SAM-like domain AK38_1612 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain AK38_1612 PF01276 Orn/Lys/Arg decarboxylase, major domain AK38_1612 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain AK38_1613 PF13407 Periplasmic binding protein domain AK38_1614 PF00005 ABC transporter AK38_1615 PF02653 Branched-chain amino acid transport system / permease component AK38_1616 PF07715 TonB-dependent Receptor Plug Domain AK38_1618 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain AK38_1618 PF01464 Transglycosylase SLT domain AK38_1619 PF04362 Bacterial Fe(2+) trafficking AK38_162 PF00707 Translation initiation factor IF-3, C-terminal domain AK38_162 PF05198 Translation initiation factor IF-3, N-terminal domain AK38_1620 PF00730 HhH-GPD superfamily base excision DNA repair protein AK38_1620 PF10576 Iron-sulfur binding domain of endonuclease III AK38_1620 PF00633 Helix-hairpin-helix motif AK38_1620 PF14815 NUDIX domain AK38_1621 PF02390 Putative methyltransferase AK38_1622 PF04320 Protein with unknown function (DUF469) AK38_1623 PF04960 Glutaminase AK38_1624 PF11101 Protein of unknown function (DUF2884) AK38_1625 PF11101 Protein of unknown function (DUF2884) AK38_1626 PF16671 Actin cross-linking domain AK38_1626 PF12146 Serine aminopeptidase, S33 AK38_1626 PF11647 Membrane Localization Domain AK38_1626 PF11713 Peptidase C80 family AK38_1626 PF07634 RtxA repeat AK38_1627 PF06969 HemN C-terminal domain AK38_1627 PF04055 Radical SAM superfamily AK38_1628 PF01725 Ham1 family AK38_1629 PF02594 Uncharacterised ACR, YggU family COG1872 AK38_163 PF01632 Ribosomal protein L35 AK38_1630 PF02325 YGGT family AK38_1631 PF03807 NADP oxidoreductase coenzyme F420-dependent AK38_1631 PF14748 Pyrroline-5-carboxylate reductase dimerisation AK38_1632 PF01168 Alanine racemase, N-terminal domain AK38_1633 PF00437 Type II/IV secretion system protein AK38_1634 PF04371 Porphyromonas-type peptidyl-arginine deiminase AK38_1635 PF00795 Carbon-nitrogen hydrolase AK38_1636 PF03652 Holliday junction resolvase AK38_1637 PF02622 Uncharacterized ACR, COG1678 AK38_1638 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain AK38_1638 PF02951 Prokaryotic glutathione synthetase, N-terminal domain AK38_1639 PF04452 RNA methyltransferase AK38_164 PF00453 Ribosomal protein L20 AK38_1640 PF04231 Endonuclease I AK38_1641 PF10263 SprT-like family AK38_1641 PF17283 SprT-like zinc ribbon domain AK38_1642 PF00438 S-adenosylmethionine synthetase, N-terminal domain AK38_1642 PF02772 S-adenosylmethionine synthetase, central domain AK38_1642 PF02773 S-adenosylmethionine synthetase, C-terminal domain AK38_1644 PF17810 Arginine decarboxylase helical bundle domain AK38_1644 PF17944 Arginine decarboxylase C-terminal helical extension AK38_1644 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain AK38_1646 PF01435 Peptidase family M48 AK38_1647 PF00456 Transketolase, thiamine diphosphate binding domain AK38_1647 PF02779 Transketolase, pyrimidine binding domain AK38_1647 PF02780 Transketolase, C-terminal domain AK38_1648 PF01797 Transposase IS200 like AK38_1649 PF00665 Integrase core domain AK38_1649 PF02796 Helix-turn-helix domain of resolvase AK38_165 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain AK38_165 PF01409 tRNA synthetases class II core domain (F) AK38_1650 PF01695 IstB-like ATP binding protein AK38_1651 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain AK38_1651 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AK38_1652 PF00162 Phosphoglycerate kinase AK38_1653 PF01116 Fructose-bisphosphate aldolase class-II AK38_1654 PF00924 Mechanosensitive ion channel AK38_1654 PF05552 Conserved TM helix AK38_1655 PF01810 LysE type translocator AK38_1656 PF04402 Protein of unknown function (DUF541) AK38_1657 PF03466 LysR substrate binding domain AK38_1657 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AK38_1658 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) AK38_1659 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AK38_1659 PF01842 ACT domain AK38_1659 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AK38_166 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain AK38_166 PF01588 Putative tRNA binding domain AK38_166 PF03484 tRNA synthetase B5 domain AK38_166 PF03483 B3/4 domain AK38_166 PF03147 Ferredoxin-fold anticodon binding domain AK38_1660 PF01812 5-formyltetrahydrofolate cyclo-ligase family AK38_1661 PF05164 Cell division protein ZapA AK38_1662 PF03695 Uncharacterised protein family (UPF0149) AK38_1663 PF00557 Metallopeptidase family M24 AK38_1663 PF05195 Aminopeptidase P, N-terminal domain AK38_1664 PF01494 FAD binding domain AK38_1665 PF01494 FAD binding domain AK38_1666 PF08669 Glycine cleavage T-protein C-terminal barrel domain AK38_1666 PF01571 Aminomethyltransferase folate-binding domain AK38_1667 PF01597 Glycine cleavage H-protein AK38_1668 PF02347 Glycine cleavage system P-protein AK38_167 PF00216 Bacterial DNA-binding protein AK38_1671 PF05658 Head domain of trimeric autotransporter adhesin AK38_1671 PF13018 Extended Signal Peptide of Type V secretion system AK38_1671 PF03895 YadA-like membrane anchor domain AK38_1671 PF05662 Coiled stalk of trimeric autotransporter adhesin AK38_1673 PF03006 Haemolysin-III related AK38_1675 PF01571 Aminomethyltransferase folate-binding domain AK38_1676 PF03937 Flavinator of succinate dehydrogenase AK38_1677 PF00072 Response regulator receiver domain AK38_1677 PF00486 Transcriptional regulatory protein, C terminal AK38_1678 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AK38_1678 PF00672 HAMP domain AK38_1678 PF00512 His Kinase A (phospho-acceptor) domain AK38_1679 PF06123 Inner membrane protein CreD AK38_1680 PF00258 Flavodoxin AK38_1681 PF02899 Phage integrase, N-terminal SAM-like domain AK38_1681 PF00589 Phage integrase family AK38_1682 PF13098 Thioredoxin-like domain AK38_1682 PF10411 Disulfide bond isomerase protein N-terminus AK38_1683 PF02272 DHHA1 domain AK38_1683 PF01368 DHH family AK38_1683 PF17768 RecJ OB domain AK38_1684 PF03462 PCRF domain AK38_1684 PF00472 RF-1 domain AK38_1685 PF01336 OB-fold nucleic acid binding domain AK38_1685 PF00152 tRNA synthetases class II (D, K and N) AK38_1687 PF00589 Phage integrase family AK38_1687 PF14659 Phage integrase, N-terminal SAM-like domain AK38_1687 PF13356 Arm DNA-binding domain AK38_169 PF01032 FecCD transport family AK38_1691 PF15723 Motility quorum-sensing regulator, toxin of MqsA AK38_1692 PF15731 Antitoxin component of bacterial toxin-antitoxin system, MqsA AK38_170 PF00255 Glutathione peroxidase AK38_1709 PF03551 Transcriptional regulator PadR-like family AK38_171 PF00005 ABC transporter AK38_1710 PF05708 Permuted papain-like amidase enzyme, YaeF/YiiX, C92 family AK38_1712 PF13407 Periplasmic binding protein domain AK38_1713 PF02653 Branched-chain amino acid transport system / permease component AK38_1714 PF00005 ABC transporter AK38_1715 PF00005 ABC transporter AK38_1715 PF17912 MalK OB fold domain AK38_1716 PF13416 Bacterial extracellular solute-binding protein AK38_1717 PF00528 Binding-protein-dependent transport system inner membrane component AK38_1718 PF00528 Binding-protein-dependent transport system inner membrane component AK38_1719 PF07745 Glycosyl hydrolase family 53 AK38_172 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family AK38_1720 PF08533 Beta-galactosidase C-terminal domain AK38_1720 PF02449 Beta-galactosidase AK38_1720 PF08532 Beta-galactosidase trimerisation domain AK38_1721 PF02378 Phosphotransferase system, EIIC AK38_1721 PF00367 phosphotransferase system, EIIB AK38_1722 PF02264 LamB porin AK38_1723 PF00356 Bacterial regulatory proteins, lacI family AK38_1724 PF01055 Glycosyl hydrolases family 31 AK38_1724 PF17137 Domain of unknown function (DUF5110) AK38_1724 PF16338 Domain of unknown function (DUF4968) AK38_1724 PF13802 Galactose mutarotase-like AK38_1725 PF07690 Major Facilitator Superfamily AK38_1726 PF00356 Bacterial regulatory proteins, lacI family AK38_1729 PF01116 Fructose-bisphosphate aldolase class-II AK38_173 PF00535 Glycosyl transferase family 2 AK38_1731 PF00884 Sulfatase AK38_1732 PF04055 Radical SAM superfamily AK38_1732 PF13186 Iron-sulfur cluster-binding domain AK38_1733 PF07470 Glycosyl Hydrolase Family 88 AK38_1735 PF01979 Amidohydrolase family AK38_1736 PF03610 PTS system fructose IIA component AK38_1737 PF03613 PTS system mannose/fructose/sorbose family IID component AK38_1738 PF03609 PTS system sorbose-specific iic component AK38_1739 PF03830 PTS system sorbose subfamily IIB component AK38_174 PF02911 Formyl transferase, C-terminal domain AK38_174 PF00551 Formyl transferase AK38_174 PF01370 NAD dependent epimerase/dehydratase family AK38_1740 PF01380 SIS domain AK38_1741 PF08013 Tagatose 6 phosphate kinase AK38_1742 PF08220 DeoR-like helix-turn-helix domain AK38_1742 PF00455 DeoR C terminal sensor domain AK38_1743 PF00884 Sulfatase AK38_1744 PF01797 Transposase IS200 like AK38_1745 PF00665 Integrase core domain AK38_1745 PF02796 Helix-turn-helix domain of resolvase AK38_1747 PF01695 IstB-like ATP binding protein AK38_1748 PF02884 Polysaccharide lyase family 8, C-terminal beta-sandwich domain AK38_1748 PF02278 Polysaccharide lyase family 8, super-sandwich domain AK38_1748 PF09092 Lyase, N terminal AK38_1748 PF09093 Lyase, catalytic AK38_175 PF01522 Polysaccharide deacetylase AK38_1752 PF00484 Carbonic anhydrase AK38_1755 PF03958 Bacterial type II/III secretion system short domain AK38_1755 PF00263 Bacterial type II and III secretion system protein AK38_1758 PF00482 Type II secretion system (T2SS), protein F AK38_1759 PF08334 Type II secretion system (T2SS), protein G AK38_1759 PF07963 Prokaryotic N-terminal methylation motif AK38_176 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase AK38_1766 PF06750 Bacterial Peptidase A24 N-terminal domain AK38_1766 PF01478 Type IV leader peptidase family AK38_177 PF00892 EamA-like transporter family AK38_1771 PF00672 HAMP domain AK38_1771 PF02203 Tar ligand binding domain homologue AK38_1771 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AK38_1773 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AK38_1773 PF03466 LysR substrate binding domain AK38_1774 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AK38_1774 PF03466 LysR substrate binding domain AK38_1775 PF07690 Major Facilitator Superfamily AK38_1776 PF00356 Bacterial regulatory proteins, lacI family AK38_1777 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain AK38_1777 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain AK38_1778 PF00384 Molybdopterin oxidoreductase AK38_1778 PF01568 Molydopterin dinucleotide binding domain AK38_1779 PF01553 Acyltransferase AK38_1779 PF00501 AMP-binding enzyme AK38_1779 PF13193 AMP-binding enzyme C-terminal domain AK38_1780 PF07690 Major Facilitator Superfamily AK38_1783 PF00248 Aldo/keto reductase family AK38_1784 PF02976 DNA mismatch repair enzyme MutH AK38_1785 PF00293 NUDIX domain AK38_1786 PF00391 PEP-utilising enzyme, mobile domain AK38_1786 PF05524 PEP-utilising enzyme, N-terminal AK38_1786 PF02896 PEP-utilising enzyme, TIM barrel domain AK38_1786 PF01590 GAF domain AK38_1787 PF01790 Prolipoprotein diacylglyceryl transferase AK38_1788 PF00303 Thymidylate synthase AK38_179 PF00877 NlpC/P60 family AK38_1791 PF00665 Integrase core domain AK38_1791 PF02796 Helix-turn-helix domain of resolvase AK38_1793 PF01695 IstB-like ATP binding protein AK38_1794 PF00668 Condensation domain AK38_1794 PF00501 AMP-binding enzyme AK38_1794 PF08242 Methyltransferase domain AK38_1794 PF00550 Phosphopantetheine attachment site AK38_1795 PF00668 Condensation domain AK38_1795 PF13193 AMP-binding enzyme C-terminal domain AK38_1795 PF00501 AMP-binding enzyme AK38_1796 PF00501 AMP-binding enzyme AK38_1796 PF00668 Condensation domain AK38_1796 PF08242 Methyltransferase domain AK38_1796 PF00550 Phosphopantetheine attachment site AK38_1799 PF00975 Thioesterase domain AK38_18 PF00005 ABC transporter AK38_18 PF00664 ABC transporter transmembrane region AK38_180 PF10437 Bacterial lipoate protein ligase C-terminus AK38_180 PF03099 Biotin/lipoate A/B protein ligase family AK38_1801 PF04954 Siderophore-interacting protein AK38_1801 PF08021 Siderophore-interacting FAD-binding domain AK38_1801 PF00005 ABC transporter AK38_1801 PF00664 ABC transporter transmembrane region AK38_1802 PF00664 ABC transporter transmembrane region AK38_1802 PF00005 ABC transporter AK38_1806 PF02447 GntP family permease AK38_1808 PF12951 Passenger-associated-transport-repeat AK38_1809 PF04717 Type VI secretion system, phage-baseplate injector AK38_181 PF02696 Uncharacterized ACR, YdiU/UPF0061 family AK38_1811 PF05593 RHS Repeat AK38_1811 PF03527 RHS protein AK38_1814 PF00939 Sodium:sulfate symporter transmembrane region AK38_1815 PF00356 Bacterial regulatory proteins, lacI family AK38_1816 PF13333 Integrase core domain AK38_1816 PF00665 Integrase core domain AK38_1816 PF13276 HTH-like domain AK38_1818 PF05433 Glycine zipper 2TM domain AK38_1819 PF05433 Glycine zipper 2TM domain AK38_182 PF02696 Uncharacterized ACR, YdiU/UPF0061 family AK38_1823 PF00691 OmpA family AK38_1823 PF13677 Membrane MotB of proton-channel complex MotA/MotB AK38_1824 PF01618 MotA/TolQ/ExbB proton channel family AK38_1825 PF04542 Sigma-70 region 2 AK38_1825 PF04545 Sigma-70, region 4 AK38_183 PF00793 DAHP synthetase I family AK38_1830 PF07196 Flagellin hook IN motif AK38_1830 PF07195 Flagellar hook-associated protein 2 C-terminus AK38_1830 PF02465 Flagellar hook-associated protein 2 N-terminus AK38_1831 PF00700 Bacterial flagellin C-terminal helical region AK38_1831 PF00669 Bacterial flagellin N-terminal helical region AK38_1832 PF00669 Bacterial flagellin N-terminal helical region AK38_1832 PF00700 Bacterial flagellin C-terminal helical region AK38_1833 PF00700 Bacterial flagellin C-terminal helical region AK38_1833 PF00669 Bacterial flagellin N-terminal helical region AK38_1834 PF00486 Transcriptional regulatory protein, C terminal AK38_1834 PF18500 CadC C-terminal domain 1 AK38_1838 PF00460 Flagella basal body rod protein AK38_1838 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AK38_184 PF03618 Kinase/pyrophosphorylase AK38_1840 PF02119 Flagellar P-ring protein AK38_1841 PF02107 Flagellar L-ring protein AK38_1842 PF00460 Flagella basal body rod protein AK38_1842 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AK38_1843 PF00460 Flagella basal body rod protein AK38_1843 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AK38_1844 PF01797 Transposase IS200 like AK38_1846 PF00460 Flagella basal body rod protein AK38_1846 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AK38_1846 PF07559 Flagellar basal body protein FlaE AK38_1847 PF13861 FlgD Tudor-like domain AK38_1847 PF13860 FlgD Ig-like domain AK38_1847 PF03963 Flagellar hook capping protein - N-terminal region AK38_1848 PF00460 Flagella basal body rod protein AK38_1848 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AK38_1849 PF00460 Flagella basal body rod protein AK38_185 PF00391 PEP-utilising enzyme, mobile domain AK38_185 PF02896 PEP-utilising enzyme, TIM barrel domain AK38_185 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain AK38_1850 PF13144 Chaperone for flagella basal body P-ring formation AK38_1854 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AK38_1854 PF18269 T3SS EscN ATPase C-terminal domain AK38_1857 PF08345 Flagellar M-ring protein C-terminal AK38_1857 PF01514 Secretory protein of YscJ/FliF family AK38_1858 PF02049 Flagellar hook-basal body complex protein FliE AK38_1859 PF00158 Sigma-54 interaction domain AK38_1859 PF00072 Response regulator receiver domain AK38_1859 PF02954 Bacterial regulatory protein, Fis family AK38_186 PF01594 AI-2E family transporter AK38_1861 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term AK38_1862 PF00813 FliP family AK38_1863 PF01313 Bacterial export proteins, family 3 AK38_1864 PF01311 Bacterial export proteins, family 1 AK38_1865 PF01312 FlhB HrpN YscU SpaS Family AK38_1866 PF00771 FHIPEP family AK38_1867 PF00771 FHIPEP family AK38_187 PF02913 FAD linked oxidases, C-terminal domain AK38_187 PF13183 4Fe-4S dicluster domain AK38_187 PF01565 FAD binding domain AK38_1870 PF01497 Periplasmic binding protein AK38_1871 PF09222 Fimbrial adhesin F17-AG, lectin domain AK38_1871 PF00419 Fimbrial protein AK38_1872 PF02753 Pili assembly chaperone PapD, C-terminal domain AK38_1872 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain AK38_1873 PF13953 PapC C-terminal domain AK38_1873 PF00577 Outer membrane usher protein AK38_1873 PF13954 PapC N-terminal domain AK38_1874 PF01797 Transposase IS200 like AK38_1875 PF01797 Transposase IS200 like AK38_1878 PF04972 BON domain AK38_1878 PF00263 Bacterial type II and III secretion system protein AK38_1878 PF13629 Pilus formation protein N terminal region AK38_1879 PF13629 Pilus formation protein N terminal region AK38_1879 PF00263 Bacterial type II and III secretion system protein AK38_1879 PF04972 BON domain AK38_188 PF03061 Thioesterase superfamily AK38_1882 PF00437 Type II/IV secretion system protein AK38_1889 PF02472 Biopolymer transport protein ExbD/TolR AK38_189 PF01521 Iron-sulphur cluster biosynthesis AK38_1891 PF01618 MotA/TolQ/ExbB proton channel family AK38_1892 PF01053 Cys/Met metabolism PLP-dependent enzyme AK38_1893 PF09335 SNARE associated Golgi protein AK38_1894 PF12833 Helix-turn-helix domain AK38_1894 PF06719 AraC-type transcriptional regulator N-terminus AK38_1895 PF00465 Iron-containing alcohol dehydrogenase AK38_1896 PF00248 Aldo/keto reductase family AK38_1897 PF04055 Radical SAM superfamily AK38_1897 PF08497 Radical SAM N-terminal AK38_1897 PF11842 Domain of unknown function (DUF3362) AK38_1898 PF04055 Radical SAM superfamily AK38_1898 PF11842 Domain of unknown function (DUF3362) AK38_1898 PF08497 Radical SAM N-terminal AK38_1899 PF07732 Multicopper oxidase AK38_1899 PF07731 Multicopper oxidase AK38_190 PF01458 Uncharacterized protein family (UPF0051) AK38_1900 PF01553 Acyltransferase AK38_1901 PF03989 DNA gyrase C-terminal domain, beta-propeller AK38_1901 PF00521 DNA gyrase/topoisomerase IV, subunit A AK38_1902 PF02525 Flavodoxin-like fold AK38_1903 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AK38_1903 PF03466 LysR substrate binding domain AK38_1904 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AK38_1904 PF00986 DNA gyrase B subunit, carboxyl terminus AK38_1904 PF00204 DNA gyrase B AK38_1904 PF01751 Toprim domain AK38_1905 PF05728 Uncharacterised protein family (UPF0227) AK38_1906 PF00149 Calcineurin-like phosphoesterase AK38_1907 PF06853 Protein of unknown function (DUF1249) AK38_1908 PF00293 NUDIX domain AK38_1909 PF02321 Outer membrane efflux protein AK38_191 PF00005 ABC transporter AK38_1911 PF06693 Protein of unknown function (DUF1190) AK38_1912 PF03738 Glutathionylspermidine synthase preATP-grasp AK38_1913 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase AK38_1914 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase AK38_1916 PF04380 Membrane fusogenic activity AK38_1917 PF13520 Amino acid permease AK38_1918 PF01467 Cytidylyltransferase-like AK38_1918 PF00294 pfkB family carbohydrate kinase AK38_1919 PF03710 Glutamate-ammonia ligase adenylyltransferase AK38_1919 PF08335 GlnD PII-uridylyltransferase AK38_192 PF01458 Uncharacterized protein family (UPF0051) AK38_1920 PF01928 CYTH domain AK38_1921 PF08239 Bacterial SH3 domain AK38_1922 PF01743 Poly A polymerase head domain AK38_1922 PF12627 Probable RNA and SrmB- binding site of polymerase A AK38_1922 PF01966 HD domain AK38_1923 PF02673 Bacitracin resistance protein BacA AK38_1924 PF02152 Dihydroneopterin aldolase AK38_1925 PF02660 Glycerol-3-phosphate acyltransferase AK38_1926 PF00814 Glycoprotease family AK38_1927 PF01165 Ribosomal protein S21 AK38_1928 PF08278 DNA primase DnaG DnaB-binding AK38_1928 PF10410 DnaB-helicase binding domain of primase AK38_1928 PF01807 CHC2 zinc finger AK38_1928 PF08275 DNA primase catalytic core, N-terminal domain AK38_1929 PF04539 Sigma-70 region 3 AK38_1929 PF04542 Sigma-70 region 2 AK38_1929 PF00140 Sigma-70 factor, region 1.2 AK38_1929 PF04545 Sigma-70, region 4 AK38_1929 PF03979 Sigma-70 factor, region 1.1 AK38_1929 PF04546 Sigma-70, non-essential region AK38_193 PF00266 Aminotransferase class-V AK38_1936 PF01695 IstB-like ATP binding protein AK38_1937 PF00665 Integrase core domain AK38_1937 PF02796 Helix-turn-helix domain of resolvase AK38_194 PF02657 Fe-S metabolism associated domain AK38_1942 PF03466 LysR substrate binding domain AK38_1942 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AK38_1946 PF01042 Endoribonuclease L-PSP AK38_195 PF01476 LysM domain AK38_195 PF17969 L,D-transpeptidase C-terminal domain AK38_195 PF03734 L,D-transpeptidase catalytic domain AK38_1950 PF00155 Aminotransferase class I and II AK38_1953 PF00529 HlyD membrane-fusion protein of T1SS AK38_1953 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AK38_1954 PF04632 Fusaric acid resistance protein family AK38_1956 PF01915 Glycosyl hydrolase family 3 C-terminal domain AK38_1956 PF00933 Glycosyl hydrolase family 3 N terminal domain AK38_1956 PF14310 Fibronectin type III-like domain AK38_1958 PF00528 Binding-protein-dependent transport system inner membrane component AK38_1959 PF00528 Binding-protein-dependent transport system inner membrane component AK38_196 PF01695 IstB-like ATP binding protein AK38_1960 PF01547 Bacterial extracellular solute-binding protein AK38_1961 PF00356 Bacterial regulatory proteins, lacI family AK38_1962 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain AK38_1963 PF03459 TOBE domain AK38_1963 PF00005 ABC transporter AK38_1963 PF17912 MalK OB fold domain AK38_1967 PF05860 haemagglutination activity domain AK38_1967 PF13018 Extended Signal Peptide of Type V secretion system AK38_1967 PF04829 Pre-toxin domain with VENN motif AK38_1967 PF13332 Hemagglutinin repeat AK38_1969 PF13332 Hemagglutinin repeat AK38_1969 PF04829 Pre-toxin domain with VENN motif AK38_1971 PF13332 Hemagglutinin repeat AK38_1971 PF04829 Pre-toxin domain with VENN motif AK38_1971 PF05860 haemagglutination activity domain AK38_1971 PF13018 Extended Signal Peptide of Type V secretion system AK38_1972 PF08479 POTRA domain, ShlB-type AK38_1972 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB AK38_1972 PF17287 POTRA domain AK38_1973 PF00092 von Willebrand factor type A domain AK38_1974 PF02342 TerD domain AK38_1976 PF00092 von Willebrand factor type A domain AK38_1979 PF03729 Short repeat of unknown function (DUF308) AK38_1980 PF07992 Pyridine nucleotide-disulphide oxidoreductase AK38_1980 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AK38_1981 PF05175 Methyltransferase small domain AK38_1982 PF03797 Autotransporter beta-domain AK38_1983 PF01863 Protein of unknown function DUF45 AK38_1984 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AK38_1985 PF00375 Sodium:dicarboxylate symporter family AK38_1987 PF01797 Transposase IS200 like AK38_1988 PF10688 Bacterial inner membrane protein AK38_1989 PF08666 SAF domain AK38_1989 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus AK38_1990 PF08125 Mannitol dehydrogenase C-terminal domain AK38_1990 PF01232 Mannitol dehydrogenase Rossmann domain AK38_1991 PF02614 Glucuronate isomerase AK38_1992 PF07690 Major Facilitator Superfamily AK38_1993 PF00392 Bacterial regulatory proteins, gntR family AK38_1993 PF07729 FCD domain AK38_1995 PF09335 SNARE associated Golgi protein AK38_1996 PF13721 SecD export protein N-terminal TM region AK38_1998 PF05957 Bacterial protein of unknown function (DUF883) AK38_1999 PF07332 Putative Actinobacterial Holin-X, holin superfamily III AK38_2 PF00905 Penicillin binding protein transpeptidase domain AK38_2 PF03717 Penicillin-binding Protein dimerisation domain AK38_20 PF04962 KduI/IolB family AK38_2001 PF07681 DoxX AK38_2002 PF13409 Glutathione S-transferase, N-terminal domain AK38_2003 PF00665 Integrase core domain AK38_2003 PF02796 Helix-turn-helix domain of resolvase AK38_2004 PF01695 IstB-like ATP binding protein AK38_2005 PF00293 NUDIX domain AK38_2006 PF02810 SEC-C motif AK38_2006 PF01043 SecA preprotein cross-linking domain AK38_2006 PF07516 SecA Wing and Scaffold domain AK38_2006 PF07517 SecA DEAD-like domain AK38_2007 PF06558 Secretion monitor precursor protein (SecM) AK38_2009 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase AK38_201 PF01797 Transposase IS200 like AK38_2010 PF12327 FtsZ family, C-terminal domain AK38_2010 PF00091 Tubulin/FtsZ family, GTPase domain AK38_2011 PF02491 SHS2 domain inserted in FTSA AK38_2012 PF08478 POTRA domain, FtsQ-type AK38_2012 PF03799 Cell division protein FtsQ AK38_2013 PF01820 D-ala D-ala ligase N-terminus AK38_2013 PF07478 D-ala D-ala ligase C-terminus AK38_2014 PF02875 Mur ligase family, glutamate ligase domain AK38_2014 PF08245 Mur ligase middle domain AK38_2014 PF01225 Mur ligase family, catalytic domain AK38_2015 PF04101 Glycosyltransferase family 28 C-terminal domain AK38_2015 PF03033 Glycosyltransferase family 28 N-terminal domain AK38_2016 PF01098 Cell cycle protein AK38_2017 PF02875 Mur ligase family, glutamate ligase domain AK38_2017 PF08245 Mur ligase middle domain AK38_2018 PF00953 Glycosyl transferase family 4 AK38_2018 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 AK38_2019 PF02875 Mur ligase family, glutamate ligase domain AK38_2019 PF08245 Mur ligase middle domain AK38_2019 PF01225 Mur ligase family, catalytic domain AK38_202 PF04728 Lipoprotein leucine-zipper AK38_2020 PF01225 Mur ligase family, catalytic domain AK38_2020 PF02875 Mur ligase family, glutamate ligase domain AK38_2020 PF08245 Mur ligase middle domain AK38_2021 PF00905 Penicillin binding protein transpeptidase domain AK38_2021 PF03717 Penicillin-binding Protein dimerisation domain AK38_2022 PF04999 Cell division protein FtsL AK38_2023 PF01795 MraW methylase family AK38_2024 PF02381 MraZ protein, putative antitoxin-like AK38_2025 PF06610 L-alanine exporter AK38_2026 PF00356 Bacterial regulatory proteins, lacI family AK38_2026 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family AK38_2027 PF01797 Transposase IS200 like AK38_2028 PF10369 Small subunit of acetolactate synthase AK38_2029 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AK38_2029 PF00205 Thiamine pyrophosphate enzyme, central domain AK38_2029 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AK38_203 PF00224 Pyruvate kinase, barrel domain AK38_203 PF02887 Pyruvate kinase, alpha/beta domain AK38_2030 PF00501 AMP-binding enzyme AK38_2031 PF03466 LysR substrate binding domain AK38_2031 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AK38_2033 PF01797 Transposase IS200 like AK38_2034 PF08502 LeuA allosteric (dimerisation) domain AK38_2034 PF00682 HMGL-like AK38_2035 PF00180 Isocitrate/isopropylmalate dehydrogenase AK38_2036 PF00330 Aconitase family (aconitate hydratase) AK38_2037 PF00694 Aconitase C-terminal domain AK38_2038 PF07690 Major Facilitator Superfamily AK38_2039 PF02796 Helix-turn-helix domain of resolvase AK38_2039 PF00665 Integrase core domain AK38_2040 PF01695 IstB-like ATP binding protein AK38_2041 PF07690 Major Facilitator Superfamily AK38_2042 PF12793 Sugar transport-related sRNA regulator N-term AK38_2042 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AK38_2045 PF00528 Binding-protein-dependent transport system inner membrane component AK38_2046 PF00005 ABC transporter AK38_2047 PF09335 SNARE associated Golgi protein AK38_2048 PF03104 DNA polymerase family B, exonuclease domain AK38_2048 PF00136 DNA polymerase family B AK38_2049 PF00271 Helicase conserved C-terminal domain AK38_2049 PF12137 RNA polymerase recycling family C-terminal AK38_2049 PF00176 SNF2 family N-terminal domain AK38_2049 PF18339 RapA N-terminal Tudor like domain 1 AK38_2049 PF18337 RapA N-terminal Tudor like domain AK38_2052 PF00691 OmpA family AK38_2052 PF05736 OprF membrane domain AK38_206 PF01554 MatE AK38_2060 PF04717 Type VI secretion system, phage-baseplate injector AK38_2061 PF07724 AAA domain (Cdc48 subfamily) AK38_2061 PF00004 ATPase family associated with various cellular activities (AAA) AK38_2061 PF17871 AAA lid domain AK38_2061 PF10431 C-terminal, D2-small domain, of ClpB protein AK38_207 PF00677 Lumazine binding domain AK38_2070 PF00849 RNA pseudouridylate synthase AK38_2071 PF05099 Tellurite resistance protein TerB AK38_2071 PF00226 DnaJ domain AK38_2072 PF04453 LPS transport system D AK38_2072 PF03968 OstA-like protein AK38_2073 PF00639 PPIC-type PPIASE domain AK38_2073 PF09312 SurA N-terminal domain AK38_2074 PF04166 Pyridoxal phosphate biosynthetic protein PdxA AK38_2075 PF00398 Ribosomal RNA adenine dimethylase AK38_2076 PF04379 ApaG domain AK38_2077 PF00149 Calcineurin-like phosphoesterase AK38_2079 PF01797 Transposase IS200 like AK38_2080 PF00186 Dihydrofolate reductase AK38_2081 PF12821 Threonine/Serine exporter, ThrE AK38_2082 PF06738 Putative threonine/serine exporter AK38_2083 PF01810 LysE type translocator AK38_2084 PF02142 MGS-like domain AK38_2084 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AK38_2084 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain AK38_2085 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain AK38_2085 PF00117 Glutamine amidotransferase class-I AK38_2086 PF05173 Dihydrodipicolinate reductase, C-terminus AK38_2086 PF01113 Dihydrodipicolinate reductase, N-terminus AK38_2087 PF01797 Transposase IS200 like AK38_2088 PF02401 LytB protein AK38_2089 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AK38_209 PF07690 Major Facilitator Superfamily AK38_2090 PF01252 Signal peptidase (SPase) II AK38_2091 PF00133 tRNA synthetases class I (I, L, M and V) AK38_2091 PF08264 Anticodon-binding domain of tRNA AK38_2091 PF06827 Zinc finger found in FPG and IleRS AK38_2092 PF06574 FAD synthetase AK38_2092 PF01687 Riboflavin kinase AK38_2093 PF01649 Ribosomal protein S20 AK38_2094 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AK38_2094 PF03466 LysR substrate binding domain AK38_2095 PF06965 Na+/H+ antiporter 1 AK38_2096 PF00226 DnaJ domain AK38_2096 PF01556 DnaJ C terminal domain AK38_2096 PF00684 DnaJ central domain AK38_2097 PF00012 Hsp70 protein AK38_2098 PF01184 GPR1/FUN34/yaaH family AK38_21 PF01261 Xylose isomerase-like TIM barrel AK38_210 PF03466 LysR substrate binding domain AK38_210 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AK38_2100 PF07690 Major Facilitator Superfamily AK38_2101 PF00994 Probable molybdopterin binding domain AK38_2102 PF00923 Transaldolase/Fructose-6-phosphate aldolase AK38_2103 PF03883 Peroxide stress protein YaaA AK38_2105 PF14821 Threonine synthase N terminus AK38_2105 PF00291 Pyridoxal-phosphate dependent enzyme AK38_2106 PF08544 GHMP kinases C terminal AK38_2106 PF00288 GHMP kinases N terminal domain AK38_2107 PF00696 Amino acid kinase family AK38_2107 PF03447 Homoserine dehydrogenase, NAD binding domain AK38_2107 PF00742 Homoserine dehydrogenase AK38_2107 PF13840 ACT domain AK38_2107 PF01842 ACT domain AK38_2109 PF00072 Response regulator receiver domain AK38_2109 PF00486 Transcriptional regulatory protein, C terminal AK38_211 PF00356 Bacterial regulatory proteins, lacI family AK38_2110 PF05981 CreA protein AK38_2112 PF00300 Histidine phosphatase superfamily (branch 1) AK38_2113 PF06445 GyrI-like small molecule binding domain AK38_2113 PF12833 Helix-turn-helix domain AK38_2114 PF01371 Trp repressor protein AK38_2115 PF01931 Protein of unknown function DUF84 AK38_2116 PF14718 Soluble lytic murein transglycosylase L domain AK38_2116 PF01464 Transglycosylase SLT domain AK38_2117 PF00689 Cation transporting ATPase, C-terminus AK38_2117 PF00690 Cation transporter/ATPase, N-terminus AK38_2119 PF00990 Diguanylate cyclase, GGDEF domain AK38_2119 PF17152 Periplasmic sensor domain AK38_2120 PF00691 OmpA family AK38_2121 PF00005 ABC transporter AK38_2121 PF12848 ABC transporter AK38_2122 PF00005 ABC transporter AK38_2122 PF12848 ABC transporter AK38_2124 PF01381 Helix-turn-helix AK38_2124 PF13521 AAA domain AK38_2125 PF18073 Rubredoxin metal binding domain AK38_2126 PF18429 Domain of unknown function (DUF5609) AK38_2127 PF10144 Bacterial virulence factor haemolysin AK38_2128 PF01048 Phosphorylase superfamily AK38_2129 PF01676 Metalloenzyme superfamily AK38_213 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain AK38_213 PF02777 Iron/manganese superoxide dismutases, C-terminal domain AK38_2130 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain AK38_2130 PF00591 Glycosyl transferase family, a/b domain AK38_2130 PF02885 Glycosyl transferase family, helical bundle domain AK38_2131 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain AK38_2131 PF02885 Glycosyl transferase family, helical bundle domain AK38_2131 PF00591 Glycosyl transferase family, a/b domain AK38_2132 PF01791 DeoC/LacD family aldolase AK38_2133 PF07662 Na+ dependent nucleoside transporter C-terminus AK38_2133 PF07670 Nucleoside recognition AK38_2133 PF01773 Na+ dependent nucleoside transporter N-terminus AK38_2134 PF01026 TatD related DNase AK38_2135 PF01734 Patatin-like phospholipase AK38_2136 PF07043 Protein of unknown function (DUF1328) AK38_2137 PF04972 BON domain AK38_2138 PF03144 Elongation factor Tu domain 2 AK38_2138 PF00009 Elongation factor Tu GTP binding domain AK38_2138 PF16658 Class II release factor RF3, C-terminal domain AK38_2139 PF00583 Acetyltransferase (GNAT) family AK38_214 PF00877 NlpC/P60 family AK38_2140 PF03603 DNA polymerase III psi subunit AK38_2141 PF08468 Methyltransferase small domain N-terminal AK38_2141 PF05175 Methyltransferase small domain AK38_2143 PF07256 Protein of unknown function (DUF1435) AK38_2144 PF00990 Diguanylate cyclase, GGDEF domain AK38_2145 PF01095 Pectinesterase AK38_2147 PF00873 AcrB/AcrD/AcrF family AK38_2148 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AK38_2151 PF01075 Glycosyltransferase family 9 (heptosyltransferase) AK38_2152 PF02782 FGGY family of carbohydrate kinases, C-terminal domain AK38_2152 PF00370 FGGY family of carbohydrate kinases, N-terminal domain AK38_2153 PF00325 Bacterial regulatory proteins, crp family AK38_2153 PF04198 Putative sugar-binding domain AK38_2154 PF04198 Putative sugar-binding domain AK38_2154 PF00325 Bacterial regulatory proteins, crp family AK38_2155 PF00005 ABC transporter AK38_2156 PF02653 Branched-chain amino acid transport system / permease component AK38_2157 PF02653 Branched-chain amino acid transport system / permease component AK38_2158 PF13407 Periplasmic binding protein domain AK38_2159 PF01791 DeoC/LacD family aldolase AK38_216 PF00462 Glutaredoxin AK38_2160 PF03992 Antibiotic biosynthesis monooxygenase AK38_2161 PF10696 Protein of unknown function (DUF2501) AK38_2162 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 AK38_2162 PF00381 PTS HPr component phosphorylation site AK38_2162 PF05524 PEP-utilising enzyme, N-terminal AK38_2162 PF02896 PEP-utilising enzyme, TIM barrel domain AK38_2162 PF00391 PEP-utilising enzyme, mobile domain AK38_2164 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit AK38_2165 PF12833 Helix-turn-helix domain AK38_2166 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit AK38_2168 PF05987 Bacterial protein of unknown function (DUF898) AK38_217 PF00929 Exonuclease AK38_2172 PF00665 Integrase core domain AK38_2177 PF01555 DNA methylase AK38_2178 PF01527 Transposase AK38_218 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AK38_2180 PF12102 Domain of unknown function (DUF3578) AK38_2180 PF07728 AAA domain (dynein-related subfamily) AK38_2181 PF02796 Helix-turn-helix domain of resolvase AK38_2181 PF00665 Integrase core domain AK38_2182 PF01695 IstB-like ATP binding protein AK38_2184 PF07338 Protein of unknown function (DUF1471) AK38_2185 PF18158 Adaptive response protein AidB N-terminal domain AK38_2185 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AK38_2185 PF02770 Acyl-CoA dehydrogenase, middle domain AK38_2186 PF00588 SpoU rRNA Methylase family AK38_2186 PF08032 RNA 2'-O ribose methyltransferase substrate binding AK38_2187 PF00575 S1 RNA binding domain AK38_2187 PF00773 RNB domain AK38_2187 PF17876 Cold shock domain AK38_2187 PF08206 Ribonuclease B OB domain AK38_2187 PF08461 Ribonuclease R winged-helix domain AK38_2188 PF02082 Transcriptional regulator AK38_2189 PF00709 Adenylosuccinate synthetase AK38_219 PF14431 YwqJ-like deaminase AK38_219 PF18807 Tripartite Tc toxins repeat AK38_2190 PF09838 Uncharacterized protein conserved in bacteria (DUF2065) AK38_2191 PF01145 SPFH domain / Band 7 family AK38_2192 PF12221 Bacterial membrane protein N terminal AK38_2192 PF01145 SPFH domain / Band 7 family AK38_2193 PF01926 50S ribosome-binding GTPase AK38_2193 PF16360 GTP-binding GTPase Middle Region AK38_2193 PF13167 GTP-binding GTPase N-terminal AK38_2194 PF17209 Hfq protein AK38_2196 PF01119 DNA mismatch repair protein, C-terminal domain AK38_2196 PF08676 MutL C terminal dimerisation domain AK38_2197 PF01520 N-acetylmuramoyl-L-alanine amidase AK38_2198 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE AK38_2199 PF03853 YjeF-related protein N-terminus AK38_2199 PF01256 Carbohydrate kinase AK38_22 PF00294 pfkB family carbohydrate kinase AK38_220 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AK38_2200 PF08331 Domain of unknown function (DUF1730) AK38_2203 PF00929 Exonuclease AK38_2204 PF03193 RsgA GTPase AK38_2205 PF02666 Phosphatidylserine decarboxylase AK38_2206 PF00924 Mechanosensitive ion channel AK38_2206 PF12795 Mechanosensitive ion channel porin domain AK38_2206 PF12794 Mechanosensitive ion channel inner membrane domain 1 AK38_2207 PF00152 tRNA synthetases class II (D, K and N) AK38_2208 PF02910 Fumarate reductase flavoprotein C-term AK38_2208 PF00890 FAD binding domain AK38_2209 PF13183 4Fe-4S dicluster domain AK38_2209 PF13085 2Fe-2S iron-sulfur cluster binding domain AK38_221 PF00440 Bacterial regulatory proteins, tetR family AK38_221 PF16925 Tetracyclin repressor-like, C-terminal domain AK38_2210 PF02300 Fumarate reductase subunit C AK38_2211 PF02313 Fumarate reductase subunit D AK38_2212 PF01797 Transposase IS200 like AK38_2213 PF00893 Small Multidrug Resistance protein AK38_2214 PF01132 Elongation factor P (EF-P) OB domain AK38_2214 PF08207 Elongation factor P (EF-P) KOW-like domain AK38_2214 PF09285 Elongation factor P, C-terminal AK38_2215 PF04055 Radical SAM superfamily AK38_2216 PF13698 Domain of unknown function (DUF4156) AK38_2217 PF00118 TCP-1/cpn60 chaperonin family AK38_2218 PF00166 Chaperonin 10 Kd subunit AK38_2219 PF04186 FxsA cytoplasmic membrane protein AK38_222 PF00884 Sulfatase AK38_222 PF08019 Phosphoethanolamine transferase EptA/EptB AK38_2220 PF10415 Fumarase C C-terminus AK38_2220 PF00206 Lyase AK38_2221 PF03605 Anaerobic c4-dicarboxylate membrane transporter AK38_2222 PF03091 CutA1 divalent ion tolerance protein AK38_2223 PF11412 Disulphide bond corrector protein DsbC AK38_2223 PF02683 Cytochrome C biogenesis protein transmembrane region AK38_2224 PF00384 Molybdopterin oxidoreductase AK38_2224 PF01568 Molydopterin dinucleotide binding domain AK38_2224 PF04879 Molybdopterin oxidoreductase Fe4S4 domain AK38_2225 PF13247 4Fe-4S dicluster domain AK38_2225 PF12800 4Fe-4S binding domain AK38_2226 PF13247 4Fe-4S dicluster domain AK38_2226 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster AK38_2226 PF07992 Pyridine nucleotide-disulphide oxidoreductase AK38_223 PF06945 Protein of unknown function (DUF1289) AK38_2233 PF06379 L-rhamnose-proton symport protein (RhaT) AK38_2234 PF12833 Helix-turn-helix domain AK38_2234 PF02311 AraC-like ligand binding domain AK38_2235 PF02311 AraC-like ligand binding domain AK38_2235 PF12833 Helix-turn-helix domain AK38_2238 PF00370 FGGY family of carbohydrate kinases, N-terminal domain AK38_2238 PF02782 FGGY family of carbohydrate kinases, C-terminal domain AK38_2239 PF06134 L-rhamnose isomerase (RhaA) AK38_224 PF00248 Aldo/keto reductase family AK38_2240 PF00596 Class II Aldolase and Adducin N-terminal domain AK38_2241 PF00465 Iron-containing alcohol dehydrogenase AK38_2242 PF05336 L-rhamnose mutarotase AK38_2243 PF00436 Single-strand binding protein family AK38_2244 PF17755 UvrA DNA-binding domain AK38_2244 PF17760 UvrA interaction domain AK38_2244 PF00005 ABC transporter AK38_2245 PF04237 YjbR AK38_2246 PF00155 Aminotransferase class I and II AK38_2247 PF01168 Alanine racemase, N-terminal domain AK38_2247 PF00842 Alanine racemase, C-terminal domain AK38_2248 PF03796 DnaB-like helicase C terminal domain AK38_2248 PF00772 DnaB-like helicase N terminal domain AK38_2249 PF00107 Zinc-binding dehydrogenase AK38_2249 PF08240 Alcohol dehydrogenase GroES-like domain AK38_225 PF01047 MarR family AK38_2250 PF09583 Phage shock protein G (Phageshock_PspG) AK38_2251 PF01207 Dihydrouridine synthase (Dus) AK38_2252 PF01475 Ferric uptake regulator family AK38_2253 PF01726 LexA DNA binding domain AK38_2253 PF00717 Peptidase S24-like AK38_2254 PF01219 Prokaryotic diacylglycerol kinase AK38_2255 PF01553 Acyltransferase AK38_2256 PF01040 UbiA prenyltransferase family AK38_2257 PF04345 Chorismate lyase AK38_2258 PF12951 Passenger-associated-transport-repeat AK38_2259 PF01565 FAD binding domain AK38_2259 PF08031 Berberine and berberine like AK38_226 PF05433 Glycine zipper 2TM domain AK38_2262 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain AK38_2263 PF13953 PapC C-terminal domain AK38_2263 PF00577 Outer membrane usher protein AK38_2263 PF13954 PapC N-terminal domain AK38_2265 PF01797 Transposase IS200 like AK38_2266 PF02342 TerD domain AK38_2267 PF02342 TerD domain AK38_2268 PF03741 Integral membrane protein TerC family AK38_2269 PF05099 Tellurite resistance protein TerB AK38_227 PF03702 Anhydro-N-acetylmuramic acid kinase AK38_2270 PF02342 TerD domain AK38_2271 PF02342 TerD domain AK38_2275 PF11202 Phosphoribosyl transferase (PRTase) AK38_2275 PF15608 PELOTA RNA binding domain AK38_2279 PF04055 Radical SAM superfamily AK38_228 PF09864 Membrane-bound lysozyme-inhibitor of c-type lysozyme AK38_2280 PF06228 Haem utilisation ChuX/HutX AK38_2281 PF13460 NAD(P)H-binding AK38_2282 PF00593 TonB dependent receptor AK38_2282 PF07715 TonB-dependent Receptor Plug Domain AK38_2283 PF05171 Haemin-degrading HemS.ChuX domain AK38_2284 PF01497 Periplasmic binding protein AK38_2285 PF01032 FecCD transport family AK38_2286 PF00005 ABC transporter AK38_2287 PF01053 Cys/Met metabolism PLP-dependent enzyme AK38_2288 PF03222 Tryptophan/tyrosine permease family AK38_2289 PF03466 LysR substrate binding domain AK38_2289 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AK38_229 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region AK38_229 PF01243 Pyridoxamine 5'-phosphate oxidase AK38_2290 PF01206 Sulfurtransferase TusA AK38_2291 PF04143 Sulphur transport AK38_2292 PF01312 FlhB HrpN YscU SpaS Family AK38_2293 PF01311 Bacterial export proteins, family 1 AK38_2294 PF01313 Bacterial export proteins, family 3 AK38_2295 PF00813 FliP family AK38_2296 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term AK38_2299 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AK38_2299 PF18269 T3SS EscN ATPase C-terminal domain AK38_23 PF02894 Oxidoreductase family, C-terminal alpha/beta domain AK38_23 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AK38_230 PF01479 S4 domain AK38_230 PF00579 tRNA synthetases class I (W and Y) AK38_2300 PF00771 FHIPEP family AK38_2303 PF01514 Secretory protein of YscJ/FliF family AK38_2307 PF12833 Helix-turn-helix domain AK38_2307 PF14525 AraC-binding-like domain AK38_231 PF08543 Phosphomethylpyrimidine kinase AK38_2310 PF03958 Bacterial type II/III secretion system short domain AK38_2310 PF00263 Bacterial type II and III secretion system protein AK38_2311 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) AK38_2311 PF00072 Response regulator receiver domain AK38_2311 PF00672 HAMP domain AK38_2311 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AK38_2311 PF00512 His Kinase A (phospho-acceptor) domain AK38_2311 PF01627 Hpt domain AK38_2312 PF00072 Response regulator receiver domain AK38_2312 PF00196 Bacterial regulatory proteins, luxR family AK38_2313 PF00375 Sodium:dicarboxylate symporter family AK38_2314 PF13193 AMP-binding enzyme C-terminal domain AK38_2314 PF00501 AMP-binding enzyme AK38_2314 PF16177 Acetyl-coenzyme A synthetase N-terminus AK38_2315 PF04341 Protein of unknown function, DUF485 AK38_2316 PF00474 Sodium:solute symporter family AK38_2318 PF00665 Integrase core domain AK38_2318 PF02796 Helix-turn-helix domain of resolvase AK38_2319 PF01695 IstB-like ATP binding protein AK38_232 PF00043 Glutathione S-transferase, C-terminal domain AK38_232 PF02798 Glutathione S-transferase, N-terminal domain AK38_2320 PF00132 Bacterial transferase hexapeptide (six repeats) AK38_2321 PF18317 Shikimate 5'-dehydrogenase C-terminal domain AK38_2321 PF01488 Shikimate / quinate 5-dehydrogenase AK38_2321 PF08501 Shikimate dehydrogenase substrate binding domain AK38_2322 PF01300 Telomere recombination AK38_2323 PF01396 Topoisomerase DNA binding C4 zinc finger AK38_2324 PF04361 Protein of unknown function (DUF494) AK38_2325 PF17782 DprA winged helix domain AK38_2325 PF02481 DNA recombination-mediator protein A AK38_2326 PF01327 Polypeptide deformylase AK38_2327 PF00551 Formyl transferase AK38_2327 PF02911 Formyl transferase, C-terminal domain AK38_2328 PF01189 16S rRNA methyltransferase RsmB/F AK38_2328 PF01029 NusB family AK38_2329 PF02080 TrkA-C domain AK38_2329 PF02254 TrkA-N domain AK38_233 PF00665 Integrase core domain AK38_233 PF02796 Helix-turn-helix domain of resolvase AK38_2330 PF01741 Large-conductance mechanosensitive channel, MscL AK38_2331 PF03889 Alternative ribosome-rescue factor A AK38_2332 PF13411 MerR HTH family regulatory protein AK38_2333 PF01196 Ribosomal protein L17 AK38_2334 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain AK38_2334 PF01000 RNA polymerase Rpb3/RpoA insert domain AK38_2334 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain AK38_2335 PF00163 Ribosomal protein S4/S9 N-terminal domain AK38_2335 PF01479 S4 domain AK38_2336 PF00411 Ribosomal protein S11 AK38_2337 PF00416 Ribosomal protein S13/S18 AK38_2338 PF00444 Ribosomal protein L36 AK38_2339 PF00344 SecY translocase AK38_234 PF01695 IstB-like ATP binding protein AK38_2340 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A AK38_2341 PF00327 Ribosomal protein L30p/L7e AK38_2342 PF03719 Ribosomal protein S5, C-terminal domain AK38_2342 PF00333 Ribosomal protein S5, N-terminal domain AK38_2343 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast AK38_2344 PF00347 Ribosomal protein L6 AK38_2345 PF00410 Ribosomal protein S8 AK38_2346 PF00253 Ribosomal protein S14p/S29e AK38_2347 PF00673 ribosomal L5P family C-terminus AK38_2347 PF00281 Ribosomal protein L5 AK38_2348 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 AK38_2348 PF00467 KOW motif AK38_2349 PF00238 Ribosomal protein L14p/L23e AK38_235 PF11656 YjbD family (DUF3811) AK38_2350 PF00366 Ribosomal protein S17 AK38_2351 PF00831 Ribosomal L29 protein AK38_2352 PF00252 Ribosomal protein L16p/L10e AK38_2353 PF07650 KH domain AK38_2353 PF00189 Ribosomal protein S3, C-terminal domain AK38_2354 PF00237 Ribosomal protein L22p/L17e AK38_2355 PF00203 Ribosomal protein S19 AK38_2356 PF03947 Ribosomal Proteins L2, C-terminal domain AK38_2356 PF00181 Ribosomal Proteins L2, RNA binding domain AK38_2357 PF00276 Ribosomal protein L23 AK38_2358 PF00573 Ribosomal protein L4/L1 family AK38_2359 PF00297 Ribosomal protein L3 AK38_236 PF04893 Yip1 domain AK38_2360 PF00338 Ribosomal protein S10p/S20e AK38_2361 PF00210 Ferritin-like domain AK38_2362 PF04324 BFD-like [2Fe-2S] binding domain AK38_2363 PF01797 Transposase IS200 like AK38_2364 PF03144 Elongation factor Tu domain 2 AK38_2364 PF03143 Elongation factor Tu C-terminal domain AK38_2364 PF00009 Elongation factor Tu GTP binding domain AK38_2365 PF03764 Elongation factor G, domain IV AK38_2365 PF00009 Elongation factor Tu GTP binding domain AK38_2365 PF14492 Elongation Factor G, domain II AK38_2365 PF00679 Elongation factor G C-terminus AK38_2365 PF03144 Elongation factor Tu domain 2 AK38_2366 PF00177 Ribosomal protein S7p/S5e AK38_2367 PF00164 Ribosomal protein S12/S23 AK38_2368 PF04077 DsrH like protein AK38_2369 PF02635 DsrE/DsrF-like family AK38_237 PF00854 POT family AK38_2370 PF02635 DsrE/DsrF-like family AK38_2371 PF13309 HTH domain AK38_2371 PF08348 YheO-like PAS domain AK38_2372 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase AK38_2372 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AK38_2373 PF04102 SlyX AK38_2374 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AK38_2375 PF09526 Probable metal-binding protein (DUF2387) AK38_2376 PF02254 TrkA-N domain AK38_2376 PF00999 Sodium/hydrogen exchanger family AK38_2377 PF02525 Flavodoxin-like fold AK38_2378 PF12848 ABC transporter AK38_2378 PF00005 ABC transporter AK38_2379 PF00005 ABC transporter AK38_2379 PF12848 ABC transporter AK38_2380 PF00535 Glycosyl transferase family 2 AK38_2382 PF02668 Taurine catabolism dioxygenase TauD, TfdA family AK38_2383 PF00528 Binding-protein-dependent transport system inner membrane component AK38_2384 PF00005 ABC transporter AK38_2385 PF04069 Substrate binding domain of ABC-type glycine betaine transport system AK38_2386 PF01810 LysE type translocator AK38_2387 PF00561 alpha/beta hydrolase fold AK38_2388 PF06794 Uncharacterised protein family (UPF0270) AK38_2389 PF00485 Phosphoribulokinase / Uridine kinase family AK38_2391 PF02566 OsmC-like protein AK38_2392 PF00027 Cyclic nucleotide-binding domain AK38_2392 PF13545 Crp-like helix-turn-helix domain AK38_2393 PF12805 FUSC-like inner membrane protein yccS AK38_2394 PF00202 Aminotransferase class-III AK38_2397 PF02796 Helix-turn-helix domain of resolvase AK38_2397 PF00665 Integrase core domain AK38_2398 PF00202 Aminotransferase class-III AK38_2399 PF00117 Glutamine amidotransferase class-I AK38_24 PF02653 Branched-chain amino acid transport system / permease component AK38_240 PF00005 ABC transporter AK38_2400 PF05872 Bacterial protein of unknown function (DUF853) AK38_2401 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD AK38_2402 PF02056 Family 4 glycosyl hydrolase AK38_2402 PF11975 Family 4 glycosyl hydrolase C-terminal domain AK38_2403 PF00356 Bacterial regulatory proteins, lacI family AK38_2405 PF07690 Major Facilitator Superfamily AK38_2406 PF07969 Amidohydrolase family AK38_2407 PF18267 Rubredoxin NAD+ reductase C-terminal domain AK38_2407 PF07992 Pyridine nucleotide-disulphide oxidoreductase AK38_2407 PF04324 BFD-like [2Fe-2S] binding domain AK38_2407 PF01077 Nitrite and sulphite reductase 4Fe-4S domain AK38_2407 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain AK38_2408 PF13806 Rieske-like [2Fe-2S] domain AK38_2409 PF01226 Formate/nitrite transporter AK38_241 PF00005 ABC transporter AK38_241 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AK38_2410 PF14824 Sirohaem biosynthesis protein central AK38_2410 PF10414 Sirohaem synthase dimerisation region AK38_2410 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AK38_2411 PF00579 tRNA synthetases class I (W and Y) AK38_2412 PF13419 Haloacid dehalogenase-like hydrolase AK38_2413 PF00834 Ribulose-phosphate 3 epimerase family AK38_2414 PF02086 D12 class N6 adenine-specific DNA methyltransferase AK38_2415 PF05036 Sporulation related domain AK38_2416 PF01761 3-dehydroquinate synthase AK38_2417 PF01202 Shikimate kinase AK38_2418 PF00263 Bacterial type II and III secretion system protein AK38_2418 PF03958 Bacterial type II/III secretion system short domain AK38_242 PF12911 N-terminal TM domain of oligopeptide transport permease C AK38_242 PF00528 Binding-protein-dependent transport system inner membrane component AK38_2423 PF00905 Penicillin binding protein transpeptidase domain AK38_2423 PF17092 Penicillin-binding protein OB-like domain AK38_2423 PF00912 Transglycosylase AK38_2424 PF00293 NUDIX domain AK38_2426 PF07095 Intracellular growth attenuator protein IgaA AK38_2427 PF13419 Haloacid dehalogenase-like hydrolase AK38_2428 PF01479 S4 domain AK38_2429 PF01430 Hsp33 protein AK38_243 PF00528 Binding-protein-dependent transport system inner membrane component AK38_2430 PF01293 Phosphoenolpyruvate carboxykinase AK38_2431 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AK38_2431 PF00512 His Kinase A (phospho-acceptor) domain AK38_2431 PF00672 HAMP domain AK38_2432 PF00486 Transcriptional regulatory protein, C terminal AK38_2432 PF00072 Response regulator receiver domain AK38_2433 PF01272 Transcription elongation factor, GreA/GreB, C-term AK38_2433 PF03449 Transcription elongation factor, N-terminal AK38_2434 PF00575 S1 RNA binding domain AK38_2434 PF16921 Tex protein YqgF-like domain AK38_2434 PF17674 HHH domain AK38_2434 PF09371 Tex-like protein N-terminal domain AK38_2435 PF04023 FeoA domain AK38_2436 PF02421 Ferrous iron transport protein B AK38_2436 PF07664 Ferrous iron transport protein B C terminus AK38_2436 PF17910 FeoB cytosolic helical domain AK38_2436 PF07670 Nucleoside recognition AK38_2437 PF09012 FeoC like transcriptional regulator AK38_2438 PF07338 Protein of unknown function (DUF1471) AK38_2439 PF00561 alpha/beta hydrolase fold AK38_244 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AK38_2440 PF00156 Phosphoribosyl transferase domain AK38_2441 PF01521 Iron-sulphur cluster biosynthesis AK38_2441 PF01106 NifU-like domain AK38_2442 PF02446 4-alpha-glucanotransferase AK38_2443 PF00343 Carbohydrate phosphorylase AK38_2444 PF00343 Carbohydrate phosphorylase AK38_2445 PF00196 Bacterial regulatory proteins, luxR family AK38_2445 PF17874 MalT-like TPR region AK38_2446 PF00581 Rhodanese-like domain AK38_2447 PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease AK38_2447 PF01694 Rhomboid family AK38_2448 PF08220 DeoR-like helix-turn-helix domain AK38_2448 PF00455 DeoR C terminal sensor domain AK38_245 PF01797 Transposase IS200 like AK38_2450 PF13276 HTH-like domain AK38_2450 PF13333 Integrase core domain AK38_2450 PF00665 Integrase core domain AK38_2451 PF02219 Methylenetetrahydrofolate reductase AK38_2452 PF03447 Homoserine dehydrogenase, NAD binding domain AK38_2452 PF00742 Homoserine dehydrogenase AK38_2452 PF00696 Amino acid kinase family AK38_2453 PF01053 Cys/Met metabolism PLP-dependent enzyme AK38_2454 PF01053 Cys/Met metabolism PLP-dependent enzyme AK38_2455 PF01340 Met Apo-repressor, MetJ AK38_2456 PF05360 yiaA/B two helix domain AK38_2457 PF01197 Ribosomal protein L31 AK38_2458 PF18319 PriA DNA helicase Cys-rich region (CRR) domain AK38_2458 PF18074 Primosomal protein N C-terminal domain AK38_2458 PF17764 3′ DNA-binding domain (3′BD) AK38_2458 PF00271 Helicase conserved C-terminal domain AK38_2458 PF00270 DEAD/DEAH box helicase AK38_246 PF02954 Bacterial regulatory protein, Fis family AK38_246 PF00158 Sigma-54 interaction domain AK38_2460 PF00356 Bacterial regulatory proteins, lacI family AK38_2461 PF05036 Sporulation related domain AK38_2462 PF00227 Proteasome subunit AK38_2463 PF00004 ATPase family associated with various cellular activities (AAA) AK38_2463 PF10431 C-terminal, D2-small domain, of ClpB protein AK38_2463 PF07724 AAA domain (Cdc48 subfamily) AK38_2464 PF01040 UbiA prenyltransferase family AK38_2465 PF03737 Aldolase/RraA AK38_2468 PF00529 HlyD membrane-fusion protein of T1SS AK38_2468 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AK38_2469 PF00005 ABC transporter AK38_2469 PF00664 ABC transporter transmembrane region AK38_2469 PF03412 Peptidase C39 family AK38_247 PF04012 PspA/IM30 family AK38_2470 PF02796 Helix-turn-helix domain of resolvase AK38_2470 PF00665 Integrase core domain AK38_2471 PF01695 IstB-like ATP binding protein AK38_2472 PF03412 Peptidase C39 family AK38_2472 PF00005 ABC transporter AK38_2472 PF00664 ABC transporter transmembrane region AK38_2473 PF01797 Transposase IS200 like AK38_2474 PF06005 Cell division protein ZapB AK38_2475 PF00230 Major intrinsic protein AK38_2476 PF02782 FGGY family of carbohydrate kinases, C-terminal domain AK38_2476 PF00370 FGGY family of carbohydrate kinases, N-terminal domain AK38_2477 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded AK38_2478 PF00175 Oxidoreductase NAD-binding domain AK38_2478 PF00970 Oxidoreductase FAD-binding domain AK38_2479 PF05656 Protein of unknown function (DUF805) AK38_248 PF06667 Phage shock protein B AK38_2480 PF07305 Protein of unknown function (DUF1454) AK38_2481 PF00121 Triosephosphate isomerase AK38_2482 PF03466 LysR substrate binding domain AK38_2482 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AK38_2483 PF02585 GlcNAc-PI de-N-acetylase AK38_2484 PF03737 Aldolase/RraA AK38_2485 PF00939 Sodium:sulfate symporter transmembrane region AK38_2489 PF00365 Phosphofructokinase AK38_249 PF04024 PspC domain AK38_2490 PF16916 Dimerisation domain of Zinc Transporter AK38_2490 PF01545 Cation efflux family AK38_2491 PF04754 Putative transposase, YhgA-like AK38_2492 PF07813 LTXXQ motif family protein AK38_2493 PF00486 Transcriptional regulatory protein, C terminal AK38_2493 PF00072 Response regulator receiver domain AK38_2494 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AK38_2494 PF00672 HAMP domain AK38_2494 PF00512 His Kinase A (phospho-acceptor) domain AK38_2494 PF16527 Two-component sensor protein CpxA, periplasmic domain AK38_2495 PF02805 Metal binding domain of Ada AK38_2495 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain AK38_2495 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain AK38_2495 PF12833 Helix-turn-helix domain AK38_2496 PF00588 SpoU rRNA Methylase family AK38_2497 PF00132 Bacterial transferase hexapeptide (six repeats) AK38_2497 PF06426 Serine acetyltransferase, N-terminal AK38_2498 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus AK38_2498 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus AK38_2499 PF02556 Preprotein translocase subunit SecB AK38_25 PF00005 ABC transporter AK38_2500 PF00462 Glutaredoxin AK38_2501 PF00581 Rhodanese-like domain AK38_2502 PF06415 BPG-independent PGAM N-terminus (iPGM_N) AK38_2502 PF01676 Metalloenzyme superfamily AK38_2503 PF01551 Peptidase family M23 AK38_2504 PF04748 Divergent polysaccharide deacetylase AK38_2505 PF04748 Divergent polysaccharide deacetylase AK38_2506 PF08240 Alcohol dehydrogenase GroES-like domain AK38_2506 PF00107 Zinc-binding dehydrogenase AK38_2507 PF00155 Aminotransferase class I and II AK38_2508 PF01370 NAD dependent epimerase/dehydratase family AK38_2509 PF01075 Glycosyltransferase family 9 (heptosyltransferase) AK38_251 PF04317 YcjX-like family, DUF463 AK38_2510 PF01075 Glycosyltransferase family 9 (heptosyltransferase) AK38_2511 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) AK38_2512 PF00535 Glycosyl transferase family 2 AK38_2513 PF01467 Cytidylyltransferase-like AK38_2514 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain AK38_2514 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain AK38_2514 PF06827 Zinc finger found in FPG and IleRS AK38_2515 PF00471 Ribosomal protein L33 AK38_2516 PF00830 Ribosomal L28 family AK38_2517 PF04002 RadC-like JAB domain AK38_2518 PF04127 DNA / pantothenate metabolism flavoprotein AK38_2518 PF02441 Flavoprotein AK38_2519 PF00692 dUTPase AK38_252 PF05128 Domain of unknown function (DUF697) AK38_2520 PF00440 Bacterial regulatory proteins, tetR family AK38_2521 PF00156 Phosphoribosyl transferase domain AK38_2522 PF01138 3' exoribonuclease family, domain 1 AK38_2522 PF03725 3' exoribonuclease family, domain 2 AK38_2523 PF08340 Domain of unknown function (DUF1732) AK38_2523 PF03755 YicC-like family, N-terminal region AK38_2524 PF03458 UPF0126 domain AK38_2525 PF01653 NAD-dependent DNA ligase adenylation domain AK38_2525 PF03120 NAD-dependent DNA ligase OB-fold domain AK38_2526 PF00625 Guanylate kinase AK38_2527 PF01192 RNA polymerase Rpb6 AK38_2528 PF13291 ACT domain AK38_2528 PF04607 Region found in RelA / SpoT proteins AK38_2528 PF02824 TGS domain AK38_2529 PF12105 SpoU, rRNA methylase, C-terminal AK38_2529 PF00588 SpoU rRNA Methylase family AK38_253 PF08808 RES domain AK38_2530 PF17191 RecG wedge domain AK38_2530 PF00270 DEAD/DEAH box helicase AK38_2530 PF00271 Helicase conserved C-terminal domain AK38_2531 PF03616 Sodium/glutamate symporter AK38_2532 PF00860 Permease family AK38_2533 PF05170 AsmA family AK38_2534 PF00583 Acetyltransferase (GNAT) family AK38_2534 PF09500 Putative thioesterase (yiiD_Cterm) AK38_2535 PF00665 Integrase core domain AK38_2535 PF02796 Helix-turn-helix domain of resolvase AK38_2536 PF01695 IstB-like ATP binding protein AK38_2537 PF02580 D-Tyr-tRNA(Tyr) deacylase AK38_2538 PF03631 Virulence factor BrkB AK38_2539 PF13419 Haloacid dehalogenase-like hydrolase AK38_254 PF09722 Protein of unknown function (DUF2384) AK38_2541 PF03951 Glutamine synthetase, beta-Grasp domain AK38_2541 PF00120 Glutamine synthetase, catalytic domain AK38_2542 PF00512 His Kinase A (phospho-acceptor) domain AK38_2542 PF00989 PAS fold AK38_2542 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AK38_2543 PF00072 Response regulator receiver domain AK38_2543 PF00158 Sigma-54 interaction domain AK38_2543 PF02954 Bacterial regulatory protein, Fis family AK38_2544 PF06969 HemN C-terminal domain AK38_2544 PF04055 Radical SAM superfamily AK38_2545 PF04220 Der GTPase activator (YihI) AK38_2546 PF01926 50S ribosome-binding GTPase AK38_2547 PF01797 Transposase IS200 like AK38_2548 PF01612 3'-5' exonuclease AK38_2548 PF01367 5'-3' exonuclease, C-terminal SAM fold AK38_2548 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain AK38_2548 PF00476 DNA polymerase family A AK38_2549 PF01323 DSBA-like thioredoxin domain AK38_255 PF00158 Sigma-54 interaction domain AK38_255 PF18024 Helix-turn-helix domain AK38_2550 PF01636 Phosphotransferase enzyme family AK38_2551 PF06288 Protein of unknown function (DUF1040) AK38_2552 PF12804 MobA-like NTP transferase domain AK38_2553 PF03205 Molybdopterin guanine dinucleotide synthesis protein B AK38_2554 PF00872 Transposase, Mutator family AK38_2559 PF00392 Bacterial regulatory proteins, gntR family AK38_2559 PF07729 FCD domain AK38_256 PF01797 Transposase IS200 like AK38_2561 PF07690 Major Facilitator Superfamily AK38_2562 PF00294 pfkB family carbohydrate kinase AK38_2563 PF05025 RbsD / FucU transport protein family AK38_2564 PF02705 K+ potassium transporter AK38_2565 PF12592 Protein of unknown function (DUF3763) AK38_2565 PF07728 AAA domain (dynein-related subfamily) AK38_2565 PF17868 AAA lid domain AK38_2566 PF05762 VWA domain containing CoxE-like protein AK38_2567 PF03590 Aspartate-ammonia ligase AK38_2568 PF01037 Lrp/AsnC ligand binding domain AK38_2569 PF00258 Flavodoxin AK38_257 PF08534 Redoxin AK38_2570 PF01134 Glucose inhibited division protein A AK38_2570 PF13932 GidA associated domain AK38_2571 PF02527 rRNA small subunit methyltransferase G AK38_2572 PF03899 ATP synthase I chain AK38_2573 PF00119 ATP synthase A chain AK38_2574 PF00137 ATP synthase subunit C AK38_2575 PF00430 ATP synthase B/B' CF(0) AK38_2576 PF00213 ATP synthase delta (OSCP) subunit AK38_2577 PF00306 ATP synthase alpha/beta chain, C terminal domain AK38_2577 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AK38_2577 PF02874 ATP synthase alpha/beta family, beta-barrel domain AK38_2578 PF00231 ATP synthase AK38_2579 PF02874 ATP synthase alpha/beta family, beta-barrel domain AK38_2579 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AK38_258 PF13378 Enolase C-terminal domain-like AK38_258 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain AK38_2580 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain AK38_2580 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain AK38_2581 PF12804 MobA-like NTP transferase domain AK38_2581 PF00132 Bacterial transferase hexapeptide (six repeats) AK38_2582 PF01380 SIS domain AK38_2583 PF12849 PBP superfamily domain AK38_2584 PF00528 Binding-protein-dependent transport system inner membrane component AK38_2585 PF00528 Binding-protein-dependent transport system inner membrane component AK38_2586 PF00005 ABC transporter AK38_2587 PF01895 PhoU domain AK38_2589 PF00497 Bacterial extracellular solute-binding proteins, family 3 AK38_259 PF00246 Zinc carboxypeptidase AK38_2590 PF00528 Binding-protein-dependent transport system inner membrane component AK38_2591 PF00528 Binding-protein-dependent transport system inner membrane component AK38_2592 PF13419 Haloacid dehalogenase-like hydrolase AK38_2593 PF00860 Permease family AK38_2596 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase AK38_2596 PF07055 Enoyl reductase FAD binding domain AK38_2596 PF12241 Trans-2-enoyl-CoA reductase catalytic region AK38_2597 PF12631 MnmE helical domain AK38_2597 PF01926 50S ribosome-binding GTPase AK38_2597 PF10396 GTP-binding protein TrmE N-terminus AK38_2598 PF14849 YidC periplasmic domain AK38_2598 PF02096 60Kd inner membrane protein AK38_2599 PF01809 Putative membrane protein insertion efficiency factor AK38_26 PF13407 Periplasmic binding protein domain AK38_260 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AK38_2600 PF00825 Ribonuclease P AK38_2601 PF00468 Ribosomal protein L34 AK38_2603 PF08299 Bacterial dnaA protein helix-turn-helix AK38_2603 PF00308 Bacterial dnaA protein AK38_2603 PF11638 DnaA N-terminal domain AK38_2604 PF02768 DNA polymerase III beta subunit, C-terminal domain AK38_2604 PF00712 DNA polymerase III beta subunit, N-terminal domain AK38_2604 PF02767 DNA polymerase III beta subunit, central domain AK38_2605 PF02463 RecF/RecN/SMC N terminal domain AK38_2606 PF01751 Toprim domain AK38_2606 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AK38_2606 PF18053 DNA gyrase B subunit insert domain AK38_2606 PF00986 DNA gyrase B subunit, carboxyl terminus AK38_2606 PF00204 DNA gyrase B AK38_2608 PF13276 HTH-like domain AK38_2608 PF00665 Integrase core domain AK38_2608 PF13333 Integrase core domain AK38_261 PF01544 CorA-like Mg2+ transporter protein AK38_2611 PF02423 Ornithine cyclodeaminase/mu-crystallin family AK38_2612 PF00291 Pyridoxal-phosphate dependent enzyme AK38_2612 PF13291 ACT domain AK38_2613 PF07676 WD40-like Beta Propeller Repeat AK38_2613 PF12566 Protein of unknown function (DUF3748) AK38_2614 PF07676 WD40-like Beta Propeller Repeat AK38_2614 PF12566 Protein of unknown function (DUF3748) AK38_2615 PF07119 Protein of unknown function (DUF1375) AK38_2616 PF00011 Hsp20/alpha crystallin family AK38_2617 PF00011 Hsp20/alpha crystallin family AK38_2618 PF02080 TrkA-C domain AK38_2618 PF06826 Predicted Permease Membrane Region AK38_2619 PF00155 Aminotransferase class I and II AK38_2621 PF00128 Alpha amylase, catalytic domain AK38_2622 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AK38_2622 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AK38_2624 PF00691 OmpA family AK38_2624 PF13488 Glycine zipper AK38_2626 PF03352 Methyladenine glycosylase AK38_2628 PF02091 Glycyl-tRNA synthetase alpha subunit AK38_2629 PF05746 DALR anticodon binding domain AK38_2629 PF02092 Glycyl-tRNA synthetase beta subunit AK38_263 PF13472 GDSL-like Lipase/Acylhydrolase family AK38_263 PF07859 alpha/beta hydrolase fold AK38_2630 PF11254 Protein of unknown function (DUF3053) AK38_2631 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 AK38_2631 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit AK38_2631 PF02378 Phosphotransferase system, EIIC AK38_2632 PF08125 Mannitol dehydrogenase C-terminal domain AK38_2632 PF01232 Mannitol dehydrogenase Rossmann domain AK38_2633 PF05068 Mannitol repressor AK38_2635 PF10928 Protein of unknown function (DUF2810) AK38_2639 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AK38_2639 PF00672 HAMP domain AK38_2639 PF02203 Tar ligand binding domain homologue AK38_2640 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain AK38_2640 PF02777 Iron/manganese superoxide dismutases, C-terminal domain AK38_2641 PF02634 FdhD/NarQ family AK38_2642 PF00384 Molybdopterin oxidoreductase AK38_2642 PF01568 Molydopterin dinucleotide binding domain AK38_2642 PF04879 Molybdopterin oxidoreductase Fe4S4 domain AK38_2643 PF00384 Molybdopterin oxidoreductase AK38_2643 PF01568 Molydopterin dinucleotide binding domain AK38_2643 PF04879 Molybdopterin oxidoreductase Fe4S4 domain AK38_2644 PF13247 4Fe-4S dicluster domain AK38_2644 PF09163 Formate dehydrogenase N, transmembrane AK38_2645 PF01292 Prokaryotic cytochrome b561 AK38_2646 PF04216 Protein involved in formate dehydrogenase formation AK38_2647 PF03841 L-seryl-tRNA selenium transferase AK38_2647 PF12390 Selenocysteine synthase N terminal AK38_265 PF01171 PP-loop family AK38_2650 PF01526 Tn3 transposase DDE domain AK38_2650 PF13700 Domain of unknown function (DUF4158) AK38_2655 PF07690 Major Facilitator Superfamily AK38_2656 PF13276 HTH-like domain AK38_2656 PF00665 Integrase core domain AK38_2656 PF13333 Integrase core domain AK38_2658 PF01757 Acyltransferase family AK38_2659 PF00419 Fimbrial protein AK38_266 PF10371 Domain of unknown function AK38_266 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II AK38_266 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase AK38_266 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AK38_266 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg AK38_2660 PF13953 PapC C-terminal domain AK38_2660 PF00577 Outer membrane usher protein AK38_2660 PF13954 PapC N-terminal domain AK38_2661 PF00577 Outer membrane usher protein AK38_2661 PF13954 PapC N-terminal domain AK38_2661 PF13953 PapC C-terminal domain AK38_2662 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain AK38_2662 PF02753 Pili assembly chaperone PapD, C-terminal domain AK38_2664 PF02782 FGGY family of carbohydrate kinases, C-terminal domain AK38_2664 PF00370 FGGY family of carbohydrate kinases, N-terminal domain AK38_2666 PF13407 Periplasmic binding protein domain AK38_2667 PF00005 ABC transporter AK38_2668 PF02653 Branched-chain amino acid transport system / permease component AK38_2669 PF12833 Helix-turn-helix domain AK38_267 PF00893 Small Multidrug Resistance protein AK38_2671 PF00589 Phage integrase family AK38_2671 PF14659 Phage integrase, N-terminal SAM-like domain AK38_2671 PF13356 Arm DNA-binding domain AK38_2673 PF04606 Ogr/Delta-like zinc finger AK38_2674 PF13737 Transposase DDE domain AK38_2675 PF13737 Transposase DDE domain AK38_2678 PF00005 ABC transporter AK38_268 PF02308 MgtC family AK38_2680 PF01032 FecCD transport family AK38_2681 PF01032 FecCD transport family AK38_2682 PF01497 Periplasmic binding protein AK38_2685 PF00156 Phosphoribosyl transferase domain AK38_2686 PF00291 Pyridoxal-phosphate dependent enzyme AK38_2687 PF17392 Urocanase C-terminal domain AK38_2687 PF01175 Urocanase Rossmann-like domain AK38_2687 PF17391 Urocanase N-terminal domain AK38_2688 PF00221 Aromatic amino acid lyase AK38_2689 PF00324 Amino acid permease AK38_269 PF03891 Domain of unknown function (DUF333) AK38_2690 PF12146 Serine aminopeptidase, S33 AK38_2691 PF00884 Sulfatase AK38_2691 PF08019 Phosphoethanolamine transferase EptA/EptB AK38_2692 PF00072 Response regulator receiver domain AK38_2692 PF00196 Bacterial regulatory proteins, luxR family AK38_2693 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AK38_2693 PF07730 Histidine kinase AK38_2693 PF05231 MASE1 AK38_2694 PF00665 Integrase core domain AK38_2694 PF02796 Helix-turn-helix domain of resolvase AK38_2695 PF01695 IstB-like ATP binding protein AK38_2696 PF05231 MASE1 AK38_2696 PF07730 Histidine kinase AK38_2696 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AK38_2697 PF07690 Major Facilitator Superfamily AK38_27 PF02894 Oxidoreductase family, C-terminal alpha/beta domain AK38_27 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AK38_270 PF03724 META domain AK38_2700 PF04829 Pre-toxin domain with VENN motif AK38_2700 PF13332 Hemagglutinin repeat AK38_2700 PF05594 Haemagluttinin repeat AK38_2700 PF05860 haemagglutination activity domain AK38_2701 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB AK38_2701 PF08479 POTRA domain, ShlB-type AK38_2701 PF17287 POTRA domain AK38_2703 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AK38_2704 PF00528 Binding-protein-dependent transport system inner membrane component AK38_2705 PF00528 Binding-protein-dependent transport system inner membrane component AK38_2705 PF12911 N-terminal TM domain of oligopeptide transport permease C AK38_2706 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AK38_2706 PF00005 ABC transporter AK38_2707 PF00005 ABC transporter AK38_2707 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AK38_2708 PF01270 Glycosyl hydrolases family 8 AK38_2709 PF00990 Diguanylate cyclase, GGDEF domain AK38_2709 PF17154 Gammaproteobacterial periplasmic sensor domain AK38_2709 PF00563 EAL domain AK38_2709 PF00672 HAMP domain AK38_271 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AK38_271 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AK38_2710 PF06178 Oligogalacturonate-specific porin protein (KdgM) AK38_2711 PF06917 Periplasmic pectate lyase AK38_2713 PF00375 Sodium:dicarboxylate symporter family AK38_2715 PF00675 Insulinase (Peptidase family M16) AK38_2715 PF05193 Peptidase M16 inactive domain AK38_2716 PF00294 pfkB family carbohydrate kinase AK38_2717 PF01361 Tautomerase enzyme AK38_2718 PF00563 EAL domain AK38_2719 PF02611 CDP-diacylglycerol pyrophosphatase AK38_272 PF11739 Dicarboxylate transport AK38_2720 PF05170 AsmA family AK38_2721 PF03631 Virulence factor BrkB AK38_2726 PF02595 Glycerate kinase family AK38_2727 PF02447 GntP family permease AK38_2728 PF17853 GGDEF-like domain AK38_2728 PF05651 Putative sugar diacid recognition AK38_2728 PF13556 PucR C-terminal helix-turn-helix domain AK38_2729 PF07992 Pyridine nucleotide-disulphide oxidoreductase AK38_2729 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AK38_273 PF13617 YnbE-like lipoprotein AK38_2730 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ AK38_2731 PF01432 Peptidase family M3 AK38_2732 PF04445 Putative SAM-dependent methyltransferase AK38_2733 PF08548 Peptidase M10 serralysin C terminal AK38_2733 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) AK38_2733 PF00413 Matrixin AK38_2734 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain AK38_2734 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase AK38_2735 PF00582 Universal stress protein family AK38_2736 PF10625 Universal stress protein B (UspB) AK38_2737 PF01797 Transposase IS200 like AK38_2738 PF01384 Phosphate transporter family AK38_274 PF07027 Protein of unknown function (DUF1318) AK38_2740 PF13188 PAS domain AK38_2740 PF00512 His Kinase A (phospho-acceptor) domain AK38_2740 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AK38_2740 PF00072 Response regulator receiver domain AK38_2740 PF08448 PAS fold AK38_2741 PF00005 ABC transporter AK38_2742 PF02653 Branched-chain amino acid transport system / permease component AK38_2743 PF13407 Periplasmic binding protein domain AK38_2745 PF01116 Fructose-bisphosphate aldolase class-II AK38_2747 PF00072 Response regulator receiver domain AK38_2747 PF00486 Transcriptional regulatory protein, C terminal AK38_2749 PF02678 Pirin AK38_2749 PF17954 Quercetinase C-terminal cupin domain AK38_275 PF01232 Mannitol dehydrogenase Rossmann domain AK38_275 PF08125 Mannitol dehydrogenase C-terminal domain AK38_2750 PF00356 Bacterial regulatory proteins, lacI family AK38_2750 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family AK38_2751 PF02447 GntP family permease AK38_2752 PF01202 Shikimate kinase AK38_2756 PF01914 MarC family integral membrane protein AK38_2757 PF02774 Semialdehyde dehydrogenase, dimerisation domain AK38_2757 PF01118 Semialdehyde dehydrogenase, NAD binding domain AK38_276 PF00325 Bacterial regulatory proteins, crp family AK38_276 PF04198 Putative sugar-binding domain AK38_2762 PF09134 Invasin, domain 3 AK38_2762 PF07979 Intimin C-type lectin domain AK38_2762 PF11924 Inverse autotransporter, beta-domain AK38_2762 PF02369 Bacterial Ig-like domain (group 1) AK38_2763 PF06580 Histidine kinase AK38_2763 PF07694 5TMR of 5TMR-LYT AK38_2764 PF00128 Alpha amylase, catalytic domain AK38_2764 PF02806 Alpha amylase, C-terminal all-beta domain AK38_2764 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) AK38_2765 PF00128 Alpha amylase, catalytic domain AK38_2765 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) AK38_2765 PF18390 Glycogen debranching enzyme C-terminal domain AK38_2766 PF00483 Nucleotidyl transferase AK38_2767 PF08323 Starch synthase catalytic domain AK38_2767 PF00534 Glycosyl transferases group 1 AK38_2768 PF00343 Carbohydrate phosphorylase AK38_2769 PF16901 C-terminal domain of alpha-glycerophosphate oxidase AK38_2769 PF01266 FAD dependent oxidoreductase AK38_277 PF02525 Flavodoxin-like fold AK38_2772 PF13276 HTH-like domain AK38_2772 PF13333 Integrase core domain AK38_2772 PF00665 Integrase core domain AK38_2774 PF02796 Helix-turn-helix domain of resolvase AK38_2774 PF00665 Integrase core domain AK38_2775 PF01695 IstB-like ATP binding protein AK38_2777 PF00311 Phosphoenolpyruvate carboxylase AK38_2778 PF07687 Peptidase dimerisation domain AK38_2778 PF01546 Peptidase family M20/M25/M40 AK38_2779 PF02774 Semialdehyde dehydrogenase, dimerisation domain AK38_2779 PF01118 Semialdehyde dehydrogenase, NAD binding domain AK38_278 PF04408 Helicase associated domain (HA2) AK38_278 PF00270 DEAD/DEAH box helicase AK38_278 PF11898 Domain of unknown function (DUF3418) AK38_278 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold AK38_278 PF00271 Helicase conserved C-terminal domain AK38_2780 PF00696 Amino acid kinase family AK38_2781 PF00206 Lyase AK38_2781 PF14698 Argininosuccinate lyase C-terminal AK38_2783 PF00593 TonB dependent receptor AK38_2783 PF07715 TonB-dependent Receptor Plug Domain AK38_2785 PF00664 ABC transporter transmembrane region AK38_2785 PF00005 ABC transporter AK38_2786 PF00529 HlyD membrane-fusion protein of T1SS AK38_2787 PF03544 Gram-negative bacterial TonB protein C-terminal AK38_2788 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AK38_2788 PF07992 Pyridine nucleotide-disulphide oxidoreductase AK38_2789 PF08534 Redoxin AK38_2789 PF00462 Glutaredoxin AK38_2790 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AK38_2790 PF07992 Pyridine nucleotide-disulphide oxidoreductase AK38_2791 PF03466 LysR substrate binding domain AK38_2791 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AK38_2793 PF00440 Bacterial regulatory proteins, tetR family AK38_2794 PF07226 Protein of unknown function (DUF1422) AK38_2795 PF05958 tRNA (Uracil-5-)-methyltransferase AK38_2796 PF07715 TonB-dependent Receptor Plug Domain AK38_2796 PF00593 TonB dependent receptor AK38_2797 PF01177 Asp/Glu/Hydantoin racemase AK38_28 PF02894 Oxidoreductase family, C-terminal alpha/beta domain AK38_28 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AK38_2804 PF13407 Periplasmic binding protein domain AK38_2805 PF00005 ABC transporter AK38_2806 PF02653 Branched-chain amino acid transport system / permease component AK38_2807 PF03466 LysR substrate binding domain AK38_2807 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AK38_2808 PF02653 Branched-chain amino acid transport system / permease component AK38_2809 PF04219 Protein of unknown function, DUF AK38_281 PF00089 Trypsin AK38_2810 PF01078 Magnesium chelatase, subunit ChlI AK38_2810 PF13335 Magnesium chelatase, subunit ChlI C-terminal AK38_2811 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AK38_2811 PF00205 Thiamine pyrophosphate enzyme, central domain AK38_2811 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AK38_2813 PF01063 Amino-transferase class IV AK38_2814 PF00920 Dehydratase family AK38_2815 PF00291 Pyridoxal-phosphate dependent enzyme AK38_2815 PF00585 C-terminal regulatory domain of Threonine dehydratase AK38_2822 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AK38_2822 PF03466 LysR substrate binding domain AK38_2823 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain AK38_2823 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain AK38_2827 PF01320 Colicin immunity protein / pyocin immunity protein AK38_2828 PF02753 Pili assembly chaperone PapD, C-terminal domain AK38_2828 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain AK38_283 PF01292 Prokaryotic cytochrome b561 AK38_2830 PF13954 PapC N-terminal domain AK38_2830 PF13953 PapC C-terminal domain AK38_2830 PF00577 Outer membrane usher protein AK38_2831 PF02753 Pili assembly chaperone PapD, C-terminal domain AK38_2831 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain AK38_2833 PF00872 Transposase, Mutator family AK38_2836 PF00580 UvrD/REP helicase N-terminal domain AK38_2836 PF13361 UvrD-like helicase C-terminal domain AK38_2839 PF00270 DEAD/DEAH box helicase AK38_2839 PF00271 Helicase conserved C-terminal domain AK38_284 PF04264 YceI-like domain AK38_2840 PF00085 Thioredoxin AK38_2841 PF07498 Rho termination factor, N-terminal domain AK38_2841 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AK38_2841 PF07497 Rho termination factor, RNA-binding domain AK38_2842 PF00953 Glycosyl transferase family 4 AK38_2843 PF02706 Chain length determinant protein AK38_2844 PF02350 UDP-N-acetylglucosamine 2-epimerase AK38_2845 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain AK38_2845 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain AK38_2845 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain AK38_2846 PF16363 GDP-mannose 4,6 dehydratase AK38_2847 PF00483 Nucleotidyl transferase AK38_2849 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family AK38_2850 PF01943 Polysaccharide biosynthesis protein AK38_2851 PF07429 4-alpha-L-fucosyltransferase glycosyl transferase group 56 AK38_2852 PF06899 WzyE protein, O-antigen assembly polymerase AK38_2853 PF03808 Glycosyl transferase WecB/TagA/CpsF family AK38_2854 PF00324 Amino acid permease AK38_286 PF18807 Tripartite Tc toxins repeat AK38_286 PF14431 YwqJ-like deaminase AK38_2860 PF01797 Transposase IS200 like AK38_2861 PF07719 Tetratricopeptide repeat AK38_2861 PF07219 HemY protein N-terminus AK38_2862 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase AK38_2863 PF02602 Uroporphyrinogen-III synthase HemD AK38_2864 PF03900 Porphobilinogen deaminase, C-terminal domain AK38_2864 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain AK38_2865 PF12633 Adenylate cyclase NT domain AK38_2865 PF01295 Adenylate cyclase, class-I AK38_2866 PF01491 Frataxin-like domain AK38_2867 PF13627 Prokaryotic lipoprotein-attachment site AK38_2868 PF01678 Diaminopimelate epimerase AK38_2869 PF04340 Protein of unknown function, DUF484 AK38_287 PF02074 Carboxypeptidase Taq (M32) metallopeptidase AK38_2870 PF02899 Phage integrase, N-terminal SAM-like domain AK38_2870 PF00589 Phage integrase family AK38_2871 PF13419 Haloacid dehalogenase-like hydrolase AK38_2872 PF13361 UvrD-like helicase C-terminal domain AK38_2872 PF00580 UvrD/REP helicase N-terminal domain AK38_2875 PF09370 Phosphoenolpyruvate hydrolase-like AK38_2876 PF01544 CorA-like Mg2+ transporter protein AK38_2877 PF00892 EamA-like transporter family AK38_2878 PF03061 Thioesterase superfamily AK38_2879 PF02253 Phospholipase A1 AK38_288 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AK38_288 PF00512 His Kinase A (phospho-acceptor) domain AK38_288 PF00672 HAMP domain AK38_2880 PF00570 HRDC domain AK38_2880 PF00271 Helicase conserved C-terminal domain AK38_2880 PF00270 DEAD/DEAH box helicase AK38_2880 PF16124 RecQ zinc-binding AK38_2880 PF09382 RQC domain AK38_2881 PF01810 LysE type translocator AK38_2882 PF01810 LysE type translocator AK38_2883 PF12146 Serine aminopeptidase, S33 AK38_2887 PF03009 Glycerophosphoryl diester phosphodiesterase family AK38_2888 PF01266 FAD dependent oxidoreductase AK38_2888 PF04324 BFD-like [2Fe-2S] binding domain AK38_2889 PF00890 FAD binding domain AK38_289 PF00486 Transcriptional regulatory protein, C terminal AK38_289 PF00072 Response regulator receiver domain AK38_2890 PF13183 4Fe-4S dicluster domain AK38_2890 PF02754 Cysteine-rich domain AK38_2891 PF08786 DcrB AK38_2892 PF02592 Putative vitamin uptake transporter AK38_2893 PF01206 Sulfurtransferase TusA AK38_2894 PF00403 Heavy-metal-associated domain AK38_2895 PF07947 YhhN family AK38_2898 PF06611 Protein of unknown function (DUF1145) AK38_29 PF00205 Thiamine pyrophosphate enzyme, central domain AK38_29 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AK38_29 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AK38_2900 PF00448 SRP54-type protein, GTPase domain AK38_2900 PF02881 SRP54-type protein, helical bundle domain AK38_2900 PF02881 SRP54-type protein, helical bundle domain AK38_2900 PF00448 SRP54-type protein, GTPase domain AK38_2901 PF00448 SRP54-type protein, GTPase domain AK38_2901 PF02881 SRP54-type protein, helical bundle domain AK38_2902 PF00005 ABC transporter AK38_2903 PF02687 FtsX-like permease family AK38_2903 PF18075 FtsX extracellular domain AK38_2904 PF04545 Sigma-70, region 4 AK38_2904 PF04542 Sigma-70 region 2 AK38_2904 PF00140 Sigma-70 factor, region 1.2 AK38_2905 PF01797 Transposase IS200 like AK38_2906 PF12568 Acetyltransferase (GNAT) domain, PanZ AK38_2907 PF13458 Periplasmic binding protein AK38_2908 PF02653 Branched-chain amino acid transport system / permease component AK38_2909 PF02653 Branched-chain amino acid transport system / permease component AK38_2909 PF11862 Domain of unknown function (DUF3382) AK38_291 PF13520 Amino acid permease AK38_2910 PF00005 ABC transporter AK38_2910 PF12399 Branched-chain amino acid ATP-binding cassette transporter AK38_2911 PF00005 ABC transporter AK38_2919 PF13416 Bacterial extracellular solute-binding protein AK38_292 PF07338 Protein of unknown function (DUF1471) AK38_2920 PF00528 Binding-protein-dependent transport system inner membrane component AK38_2921 PF00528 Binding-protein-dependent transport system inner membrane component AK38_2922 PF17912 MalK OB fold domain AK38_2922 PF00005 ABC transporter AK38_2923 PF03009 Glycerophosphoryl diester phosphodiesterase family AK38_2924 PF03547 Membrane transport protein AK38_2925 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AK38_2925 PF03466 LysR substrate binding domain AK38_2926 PF00892 EamA-like transporter family AK38_2927 PF08267 Cobalamin-independent synthase, N-terminal domain AK38_2927 PF01717 Cobalamin-independent synthase, Catalytic domain AK38_2928 PF01738 Dienelactone hydrolase family AK38_2929 PF01048 Phosphorylase superfamily AK38_293 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch AK38_293 PF05222 Alanine dehydrogenase/PNT, N-terminal domain AK38_293 PF01262 Alanine dehydrogenase/PNT, C-terminal domain AK38_2931 PF13722 5TM C-terminal transporter carbon starvation CstA AK38_2931 PF02554 Carbon starvation protein CstA AK38_2932 PF09335 SNARE associated Golgi protein AK38_2933 PF02646 RmuC family AK38_2934 PF01209 ubiE/COQ5 methyltransferase family AK38_2935 PF02036 SCP-2 sterol transfer family AK38_2936 PF03109 ABC1 family AK38_2937 PF02416 mttA/Hcf106 family AK38_2939 PF00902 Sec-independent protein translocase protein (TatC) AK38_294 PF02233 NAD(P) transhydrogenase beta subunit AK38_2940 PF01026 TatD related DNase AK38_2941 PF00665 Integrase core domain AK38_2941 PF02796 Helix-turn-helix domain of resolvase AK38_2942 PF01695 IstB-like ATP binding protein AK38_2943 PF01026 TatD related DNase AK38_2944 PF00490 Delta-aminolevulinic acid dehydratase AK38_2945 PF02357 Transcription termination factor nusG AK38_2946 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase AK38_2947 PF00175 Oxidoreductase NAD-binding domain AK38_2947 PF00970 Oxidoreductase FAD-binding domain AK38_2948 PF02803 Thiolase, C-terminal domain AK38_2948 PF00108 Thiolase, N-terminal domain AK38_2949 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain AK38_2949 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AK38_2949 PF00378 Enoyl-CoA hydratase/isomerase AK38_295 PF00582 Universal stress protein family AK38_2950 PF00557 Metallopeptidase family M24 AK38_2951 PF01205 Uncharacterized protein family UPF0029 AK38_2951 PF09186 Domain of unknown function (DUF1949) AK38_2952 PF01797 Transposase IS200 like AK38_2953 PF01205 Uncharacterized protein family UPF0029 AK38_2953 PF09186 Domain of unknown function (DUF1949) AK38_2954 PF02386 Cation transport protein AK38_2955 PF12724 Flavodoxin domain AK38_296 PF13545 Crp-like helix-turn-helix domain AK38_296 PF00027 Cyclic nucleotide-binding domain AK38_2961 PF01565 FAD binding domain AK38_2961 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain AK38_2962 PF08279 HTH domain AK38_2962 PF03099 Biotin/lipoate A/B protein ligase family AK38_2962 PF02237 Biotin protein ligase C terminal domain AK38_2963 PF00485 Phosphoribulokinase / Uridine kinase family AK38_2964 PF13673 Acetyltransferase (GNAT) domain AK38_2965 PF00665 Integrase core domain AK38_2965 PF02796 Helix-turn-helix domain of resolvase AK38_2966 PF01695 IstB-like ATP binding protein AK38_297 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain AK38_297 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain AK38_2971 PF03143 Elongation factor Tu C-terminal domain AK38_2971 PF03144 Elongation factor Tu domain 2 AK38_2971 PF00009 Elongation factor Tu GTP binding domain AK38_2972 PF00584 SecE/Sec61-gamma subunits of protein translocation complex AK38_2973 PF00467 KOW motif AK38_2973 PF02357 Transcription termination factor nusG AK38_2974 PF03946 Ribosomal protein L11, N-terminal domain AK38_2974 PF00298 Ribosomal protein L11, RNA binding domain AK38_2975 PF00687 Ribosomal protein L1p/L10e family AK38_2976 PF00466 Ribosomal protein L10 AK38_2977 PF00542 Ribosomal protein L7/L12 C-terminal domain AK38_2977 PF16320 Ribosomal protein L7/L12 dimerisation domain AK38_2978 PF04560 RNA polymerase Rpb2, domain 7 AK38_2978 PF04563 RNA polymerase beta subunit AK38_2978 PF04561 RNA polymerase Rpb2, domain 2 AK38_2978 PF10385 RNA polymerase beta subunit external 1 domain AK38_2978 PF00562 RNA polymerase Rpb2, domain 6 AK38_2978 PF04565 RNA polymerase Rpb2, domain 3 AK38_2979 PF05000 RNA polymerase Rpb1, domain 4 AK38_2979 PF04998 RNA polymerase Rpb1, domain 5 AK38_2979 PF04983 RNA polymerase Rpb1, domain 3 AK38_2979 PF00623 RNA polymerase Rpb1, domain 2 AK38_2979 PF04997 RNA polymerase Rpb1, domain 1 AK38_298 PF00245 Alkaline phosphatase AK38_2980 PF01797 Transposase IS200 like AK38_2981 PF06968 Biotin and Thiamin Synthesis associated domain AK38_2981 PF04055 Radical SAM superfamily AK38_2982 PF05690 Thiazole biosynthesis protein ThiG AK38_2984 PF00899 ThiF family AK38_2985 PF02581 Thiamine monophosphate synthase AK38_2986 PF01964 Radical SAM ThiC family AK38_2986 PF13667 ThiC-associated domain AK38_2987 PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ AK38_2988 PF00293 NUDIX domain AK38_2988 PF09297 NADH pyrophosphatase zinc ribbon domain AK38_2990 PF01208 Uroporphyrinogen decarboxylase (URO-D) AK38_2991 PF04493 Endonuclease V AK38_2992 PF04222 Protein of unknown function (DUF416) AK38_2993 PF00216 Bacterial DNA-binding protein AK38_2994 PF07356 Protein of unknown function (DUF1481) AK38_2995 PF02844 Phosphoribosylglycinamide synthetase, N domain AK38_2995 PF02843 Phosphoribosylglycinamide synthetase, C domain AK38_2995 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain AK38_2996 PF01808 AICARFT/IMPCHase bienzyme AK38_2996 PF02142 MGS-like domain AK38_3 PF01098 Cell cycle protein AK38_30 PF00171 Aldehyde dehydrogenase family AK38_3007 PF04204 Homoserine O-succinyltransferase AK38_3008 PF01274 Malate synthase AK38_3009 PF00463 Isocitrate lyase family AK38_301 PF13419 Haloacid dehalogenase-like hydrolase AK38_3010 PF06315 Isocitrate dehydrogenase kinase/phosphatase (AceK) AK38_3011 PF01614 Bacterial transcriptional regulator AK38_3011 PF09339 IclR helix-turn-helix domain AK38_3012 PF01614 Bacterial transcriptional regulator AK38_3012 PF09339 IclR helix-turn-helix domain AK38_3013 PF02607 B12 binding domain AK38_3013 PF02310 B12 binding domain AK38_3013 PF02574 Homocysteine S-methyltransferase AK38_3013 PF02965 Vitamin B12 dependent methionine synthase, activation domain AK38_3013 PF00809 Pterin binding enzyme AK38_3014 PF05860 haemagglutination activity domain AK38_3014 PF13332 Hemagglutinin repeat AK38_3015 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB AK38_3015 PF08479 POTRA domain, ShlB-type AK38_3015 PF17287 POTRA domain AK38_3016 PF00696 Amino acid kinase family AK38_3016 PF01842 ACT domain AK38_3017 PF00342 Phosphoglucose isomerase AK38_3018 PF06146 Phosphate-starvation-inducible E AK38_3019 PF00528 Binding-protein-dependent transport system inner membrane component AK38_302 PF01842 ACT domain AK38_3020 PF14785 Maltose transport system permease protein MalF P2 domain AK38_3020 PF00528 Binding-protein-dependent transport system inner membrane component AK38_3021 PF01547 Bacterial extracellular solute-binding protein AK38_3023 PF00005 ABC transporter AK38_3023 PF17912 MalK OB fold domain AK38_3024 PF02264 LamB porin AK38_3025 PF07148 Maltose operon periplasmic protein precursor (MalM) AK38_3027 PF05638 Type VI secretion system effector, Hcp AK38_303 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AK38_303 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AK38_303 PF00205 Thiamine pyrophosphate enzyme, central domain AK38_3031 PF13333 Integrase core domain AK38_3031 PF13276 HTH-like domain AK38_3031 PF00665 Integrase core domain AK38_3034 PF02796 Helix-turn-helix domain of resolvase AK38_3034 PF00665 Integrase core domain AK38_3035 PF01695 IstB-like ATP binding protein AK38_3037 PF00356 Bacterial regulatory proteins, lacI family AK38_3038 PF02378 Phosphotransferase system, EIIC AK38_3038 PF00367 phosphotransferase system, EIIB AK38_3039 PF11941 Domain of unknown function (DUF3459) AK38_3039 PF00128 Alpha amylase, catalytic domain AK38_3040 PF01272 Transcription elongation factor, GreA/GreB, C-term AK38_3040 PF14760 Rnk N-terminus AK38_3041 PF07361 Cytochrome b562 AK38_3043 PF01523 Putative modulator of DNA gyrase AK38_3044 PF04751 Protein of unknown function (DUF615) AK38_3045 PF01337 Barstar (barnase inhibitor) AK38_3047 PF00171 Aldehyde dehydrogenase family AK38_3048 PF00171 Aldehyde dehydrogenase family AK38_3049 PF04632 Fusaric acid resistance protein family AK38_3050 PF13533 Biotin-lipoyl like AK38_3051 PF07869 Protein of unknown function (DUF1656) AK38_3052 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AK38_3052 PF03466 LysR substrate binding domain AK38_3057 PF03534 Salmonella virulence plasmid 65kDa B protein AK38_3057 PF12255 Insecticide toxin TcdB middle/C-terminal region AK38_3057 PF12256 Insecticide toxin TcdB middle/N-terminal region AK38_3061 PF05785 Rho-activating domain of cytotoxic necrotizing factor AK38_3061 PF18807 Tripartite Tc toxins repeat AK38_3062 PF18807 Tripartite Tc toxins repeat AK38_3062 PF14431 YwqJ-like deaminase AK38_3063 PF01523 Putative modulator of DNA gyrase AK38_3064 PF00795 Carbon-nitrogen hydrolase AK38_3065 PF13502 AsmA-like C-terminal region AK38_3065 PF13116 Protein of unknown function AK38_3066 PF00575 S1 RNA binding domain AK38_3066 PF10150 Ribonuclease E/G family AK38_3067 PF02545 Maf-like protein AK38_3068 PF04093 rod shape-determining protein MreD AK38_3069 PF04085 rod shape-determining protein MreC AK38_3071 PF17157 Gammaproteobacterial periplasmic sensor domain AK38_3071 PF00990 Diguanylate cyclase, GGDEF domain AK38_3071 PF00563 EAL domain AK38_3072 PF00107 Zinc-binding dehydrogenase AK38_3072 PF08240 Alcohol dehydrogenase GroES-like domain AK38_3073 PF00174 Oxidoreductase molybdopterin binding domain AK38_3074 PF01794 Ferric reductase like transmembrane component AK38_3075 PF01220 Dehydroquinase class II AK38_3076 PF00364 Biotin-requiring enzyme AK38_3077 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AK38_3077 PF02785 Biotin carboxylase C-terminal domain AK38_3077 PF00289 Biotin carboxylase, N-terminal domain AK38_3079 PF06196 Protein of unknown function (DUF997) AK38_308 PF01048 Phosphorylase superfamily AK38_308 PF10423 Bacterial AMP nucleoside phosphorylase N-terminus AK38_3080 PF00474 Sodium:solute symporter family AK38_3082 PF01207 Dihydrouridine synthase (Dus) AK38_3083 PF02954 Bacterial regulatory protein, Fis family AK38_3086 PF07690 Major Facilitator Superfamily AK38_3087 PF02627 Carboxymuconolactone decarboxylase family AK38_3088 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AK38_3088 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase AK38_3089 PF00753 Metallo-beta-lactamase superfamily AK38_309 PF00528 Binding-protein-dependent transport system inner membrane component AK38_3090 PF05433 Glycine zipper 2TM domain AK38_3091 PF00313 'Cold-shock' DNA-binding domain AK38_3092 PF00313 'Cold-shock' DNA-binding domain AK38_3093 PF01797 Transposase IS200 like AK38_3096 PF02798 Glutathione S-transferase, N-terminal domain AK38_3097 PF00571 CBS domain AK38_3097 PF01380 SIS domain AK38_3098 PF00370 FGGY family of carbohydrate kinases, N-terminal domain AK38_3098 PF02782 FGGY family of carbohydrate kinases, C-terminal domain AK38_310 PF09084 NMT1/THI5 like AK38_3100 PF02653 Branched-chain amino acid transport system / permease component AK38_3101 PF00005 ABC transporter AK38_3103 PF03279 Bacterial lipid A biosynthesis acyltransferase AK38_3105 PF00999 Sodium/hydrogen exchanger family AK38_3106 PF00860 Permease family AK38_3107 PF04221 RelB antitoxin AK38_3108 PF00005 ABC transporter AK38_3109 PF00528 Binding-protein-dependent transport system inner membrane component AK38_311 PF13407 Periplasmic binding protein domain AK38_3110 PF00296 Luciferase-like monooxygenase AK38_3111 PF09084 NMT1/THI5 like AK38_3112 PF03358 NADPH-dependent FMN reductase AK38_3113 PF01791 DeoC/LacD family aldolase AK38_3114 PF00294 pfkB family carbohydrate kinase AK38_3115 PF05025 RbsD / FucU transport protein family AK38_3116 PF12833 Helix-turn-helix domain AK38_3116 PF02311 AraC-like ligand binding domain AK38_3117 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AK38_3117 PF02894 Oxidoreductase family, C-terminal alpha/beta domain AK38_3120 PF05593 RHS Repeat AK38_3120 PF03527 RHS protein AK38_3122 PF04717 Type VI secretion system, phage-baseplate injector AK38_3128 PF05593 RHS Repeat AK38_3128 PF03527 RHS protein AK38_3128 PF14220 Domain of unknown function (DUF4329) AK38_313 PF00356 Bacterial regulatory proteins, lacI family AK38_3131 PF04717 Type VI secretion system, phage-baseplate injector AK38_3138 PF07724 AAA domain (Cdc48 subfamily) AK38_3138 PF10431 C-terminal, D2-small domain, of ClpB protein AK38_3138 PF00004 ATPase family associated with various cellular activities (AAA) AK38_3138 PF17871 AAA lid domain AK38_3145 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain AK38_3145 PF01367 5'-3' exonuclease, C-terminal SAM fold AK38_3146 PF01695 IstB-like ATP binding protein AK38_3147 PF02796 Helix-turn-helix domain of resolvase AK38_3147 PF00665 Integrase core domain AK38_3148 PF01042 Endoribonuclease L-PSP AK38_3149 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain AK38_3149 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain AK38_3150 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain AK38_3150 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain AK38_3151 PF00381 PTS HPr component phosphorylation site AK38_3152 PF03668 P-loop ATPase protein family AK38_3153 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 AK38_3154 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein AK38_3155 PF04963 Sigma-54 factor, core binding domain AK38_3155 PF00309 Sigma-54 factor, Activator interacting domain (AID) AK38_3155 PF04552 Sigma-54, DNA binding domain AK38_3156 PF12399 Branched-chain amino acid ATP-binding cassette transporter AK38_3156 PF00005 ABC transporter AK38_3157 PF03968 OstA-like protein AK38_3158 PF06835 Lipopolysaccharide-assembly, LptC-related AK38_3160 PF00571 CBS domain AK38_3160 PF01380 SIS domain AK38_3161 PF01699 Sodium/calcium exchanger protein AK38_3162 PF00005 ABC transporter AK38_3163 PF02405 Permease MlaE AK38_3164 PF02470 MlaD protein AK38_3165 PF05494 MlaC protein AK38_3166 PF13466 STAS domain AK38_3167 PF01722 BolA-like protein AK38_3168 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) AK38_3169 PF13180 PDZ domain AK38_3170 PF01797 Transposase IS200 like AK38_3171 PF13180 PDZ domain AK38_3171 PF00595 PDZ domain AK38_3172 PF06295 Protein of unknown function (DUF1043) AK38_3173 PF03969 AFG1-like ATPase AK38_3174 PF00572 Ribosomal protein L13 AK38_3175 PF00380 Ribosomal protein S9/S16 AK38_3176 PF00043 Glutathione S-transferase, C-terminal domain AK38_3176 PF02798 Glutathione S-transferase, N-terminal domain AK38_3177 PF04386 Stringent starvation protein B AK38_3179 PF07992 Pyridine nucleotide-disulphide oxidoreductase AK38_3179 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster AK38_318 PF05707 Zonular occludens toxin (Zot) AK38_3180 PF01493 GXGXG motif AK38_3180 PF01645 Conserved region in glutamate synthase AK38_3180 PF04898 Glutamate synthase central domain AK38_3180 PF00310 Glutamine amidotransferases class-II AK38_3181 PF04055 Radical SAM superfamily AK38_3181 PF16199 Radical_SAM C-terminal domain AK38_3182 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AK38_3182 PF01627 Hpt domain AK38_3182 PF00989 PAS fold AK38_3182 PF00072 Response regulator receiver domain AK38_3182 PF00512 His Kinase A (phospho-acceptor) domain AK38_3182 PF18415 Histidine kinase receptor ArcB trans-membrane domain AK38_3184 PF00912 Transglycosylase AK38_3185 PF04972 BON domain AK38_3186 PF13580 SIS domain AK38_3187 PF02021 Uncharacterised protein family UPF0102 AK38_3188 PF04348 LppC putative lipoprotein AK38_3189 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AK38_3190 PF17954 Quercetinase C-terminal cupin domain AK38_3190 PF02678 Pirin AK38_3191 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AK38_3191 PF03466 LysR substrate binding domain AK38_3192 PF13409 Glutathione S-transferase, N-terminal domain AK38_3193 PF01695 IstB-like ATP binding protein AK38_3194 PF00665 Integrase core domain AK38_3194 PF02796 Helix-turn-helix domain of resolvase AK38_3195 PF00326 Prolyl oligopeptidase family AK38_3197 PF01250 Ribosomal protein S6 AK38_3198 PF01084 Ribosomal protein S18 AK38_3199 PF03948 Ribosomal protein L9, C-terminal domain AK38_3199 PF01281 Ribosomal protein L9, N-terminal domain AK38_3200 PF01797 Transposase IS200 like AK38_3202 PF08525 Opacity-associated protein A N-terminal motif AK38_3202 PF04225 Opacity-associated protein A LysM-like domain AK38_3203 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AK38_3203 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase AK38_3204 PF01814 Hemerythrin HHE cation binding domain AK38_3204 PF04405 Domain of Unknown function (DUF542) AK38_3205 PF00149 Calcineurin-like phosphoesterase AK38_3205 PF02872 5'-nucleotidase, C-terminal domain AK38_3206 PF00459 Inositol monophosphatase family AK38_3207 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) AK38_3208 PF06526 Protein of unknown function (DUF1107) AK38_3209 PF03471 Transporter associated domain AK38_3209 PF01595 Cyclin M transmembrane N-terminal domain AK38_3209 PF00571 CBS domain AK38_3210 PF01625 Peptide methionine sulfoxide reductase AK38_3211 PF17243 POTRA domain TamA domain 1 AK38_3211 PF07244 Surface antigen variable number repeat AK38_3211 PF01103 Surface antigen AK38_3214 PF06094 Gamma-glutamyl cyclotransferase, AIG2-like AK38_3215 PF00719 Inorganic pyrophosphatase AK38_3216 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain AK38_3217 PF08245 Mur ligase middle domain AK38_3217 PF02875 Mur ligase family, glutamate ligase domain AK38_3217 PF01225 Mur ligase family, catalytic domain AK38_3219 PF02863 Arginine repressor, C-terminal domain AK38_3219 PF01316 Arginine repressor, DNA binding domain AK38_3220 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain AK38_3220 PF00056 lactate/malate dehydrogenase, NAD binding domain AK38_3221 PF13693 Winged helix-turn-helix DNA-binding AK38_3223 PF00348 Polyprenyl synthetase AK38_3224 PF00829 Ribosomal prokaryotic L21 protein AK38_3225 PF01016 Ribosomal L27 protein AK38_3226 PF00892 EamA-like transporter family AK38_3227 PF01926 50S ribosome-binding GTPase AK38_3227 PF01018 GTP1/OBG AK38_3228 PF00512 His Kinase A (phospho-acceptor) domain AK38_3228 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AK38_3228 PF00672 HAMP domain AK38_3229 PF00486 Transcriptional regulatory protein, C terminal AK38_3229 PF00072 Response regulator receiver domain AK38_3230 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family AK38_3231 PF01272 Transcription elongation factor, GreA/GreB, C-term AK38_3231 PF03449 Transcription elongation factor, N-terminal AK38_3232 PF01985 CRS1 / YhbY (CRM) domain AK38_3233 PF01728 FtsJ-like methyltransferase AK38_3234 PF17862 AAA+ lid domain AK38_3234 PF06480 FtsH Extracellular AK38_3234 PF00004 ATPase family associated with various cellular activities (AAA) AK38_3234 PF01434 Peptidase family M41 AK38_3235 PF00809 Pterin binding enzyme AK38_3236 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain AK38_3236 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III AK38_3236 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I AK38_3236 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II AK38_3237 PF03840 Preprotein translocase SecG subunit AK38_3240 PF02576 RimP N-terminal domain AK38_3240 PF17384 RimP C-terminal SH3 domain AK38_3241 PF08529 NusA N-terminal domain AK38_3241 PF00575 S1 RNA binding domain AK38_3241 PF13184 NusA-like KH domain AK38_3242 PF08364 Bacterial translation initiation factor IF-2 associated region AK38_3242 PF00009 Elongation factor Tu GTP binding domain AK38_3242 PF03144 Elongation factor Tu domain 2 AK38_3242 PF04760 Translation initiation factor IF-2, N-terminal region AK38_3242 PF11987 Translation-initiation factor 2 AK38_3243 PF02033 Ribosome-binding factor A AK38_3244 PF16198 tRNA pseudouridylate synthase B C-terminal domain AK38_3244 PF09157 Pseudouridine synthase II TruB, C-terminal AK38_3244 PF01509 TruB family pseudouridylate synthase (N terminal domain) AK38_3245 PF00312 Ribosomal protein S15 AK38_3247 PF00665 Integrase core domain AK38_3247 PF13333 Integrase core domain AK38_3247 PF13276 HTH-like domain AK38_3248 PF00575 S1 RNA binding domain AK38_3248 PF00013 KH domain AK38_3248 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain AK38_3248 PF01138 3' exoribonuclease family, domain 1 AK38_3248 PF03725 3' exoribonuclease family, domain 2 AK38_3249 PF13181 Tetratricopeptide repeat AK38_3249 PF07719 Tetratricopeptide repeat AK38_3250 PF00271 Helicase conserved C-terminal domain AK38_3250 PF12343 Cold shock protein DEAD box A AK38_3250 PF00270 DEAD/DEAH box helicase AK38_3250 PF03880 DbpA RNA binding domain AK38_3252 PF01381 Helix-turn-helix AK38_3253 PF00296 Luciferase-like monooxygenase AK38_3255 PF00529 HlyD membrane-fusion protein of T1SS AK38_3255 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AK38_3256 PF00873 AcrB/AcrD/AcrF family AK38_3257 PF02321 Outer membrane efflux protein AK38_3257 PF08139 Prokaryotic membrane lipoprotein lipid attachment site AK38_3258 PF01136 Peptidase family U32 AK38_3259 PF01136 Peptidase family U32 AK38_3260 PF02036 SCP-2 sterol transfer family AK38_3261 PF13508 Acetyltransferase (GNAT) domain AK38_3262 PF01541 GIY-YIG catalytic domain AK38_3265 PF13416 Bacterial extracellular solute-binding protein AK38_3266 PF00528 Binding-protein-dependent transport system inner membrane component AK38_3267 PF00528 Binding-protein-dependent transport system inner membrane component AK38_3268 PF17912 MalK OB fold domain AK38_3268 PF00005 ABC transporter AK38_3268 PF03459 TOBE domain AK38_3271 PF13460 NAD(P)H-binding AK38_3272 PF12706 Beta-lactamase superfamily domain AK38_3274 PF07969 Amidohydrolase family AK38_3275 PF00005 ABC transporter AK38_3276 PF00005 ABC transporter AK38_3277 PF06007 Phosphonate metabolism protein PhnJ AK38_3278 PF05861 Bacterial phosphonate metabolism protein (PhnI) AK38_3279 PF05845 Bacterial phosphonate metabolism protein (PhnH) AK38_3280 PF06754 Phosphonate metabolism protein PhnG AK38_3281 PF07702 UTRA domain AK38_3281 PF00392 Bacterial regulatory proteins, gntR family AK38_3284 PF13597 Anaerobic ribonucleoside-triphosphate reductase AK38_3284 PF03477 ATP cone domain AK38_3285 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AK38_3285 PF00005 ABC transporter AK38_3286 PF00005 ABC transporter AK38_3286 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AK38_3287 PF00528 Binding-protein-dependent transport system inner membrane component AK38_3287 PF12911 N-terminal TM domain of oligopeptide transport permease C AK38_3288 PF00528 Binding-protein-dependent transport system inner membrane component AK38_3291 PF04074 YhcH/YjgK/YiaL AK38_3292 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain AK38_3292 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain AK38_3293 PF06877 Regulator of ribonuclease activity B AK38_3294 PF00583 Acetyltransferase (GNAT) family AK38_3295 PF08264 Anticodon-binding domain of tRNA AK38_3295 PF10458 Valyl tRNA synthetase tRNA binding arm AK38_3295 PF00133 tRNA synthetases class I (I, L, M and V) AK38_3296 PF04364 DNA polymerase III chi subunit, HolC AK38_3297 PF02789 Cytosol aminopeptidase family, N-terminal domain AK38_3297 PF00883 Cytosol aminopeptidase family, catalytic domain AK38_3298 PF03739 Lipopolysaccharide export system permease LptF/LptG AK38_3299 PF03739 Lipopolysaccharide export system permease LptF/LptG AK38_330 PF00654 Voltage gated chloride channel AK38_3301 PF13356 Arm DNA-binding domain AK38_3301 PF00589 Phage integrase family AK38_3303 PF08676 MutL C terminal dimerisation domain AK38_3303 PF01119 DNA mismatch repair protein, C-terminal domain AK38_3304 PF01695 IstB-like ATP binding protein AK38_3305 PF02796 Helix-turn-helix domain of resolvase AK38_3305 PF00665 Integrase core domain AK38_3306 PF01797 Transposase IS200 like AK38_3307 PF03884 DNA gyrase inhibitor YacG AK38_3308 PF07072 Cell division protein AK38_3309 PF01121 Dephospho-CoA kinase AK38_3310 PF00478 IMP dehydrogenase / GMP reductase domain AK38_3311 PF00482 Type II secretion system (T2SS), protein F AK38_3312 PF00437 Type II/IV secretion system protein AK38_3312 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain AK38_3313 PF07963 Prokaryotic N-terminal methylation motif AK38_3314 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain AK38_3314 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain AK38_3315 PF01510 N-acetylmuramoyl-L-alanine amidase AK38_3316 PF17113 Regulatory signalling modulator protein AmpE AK38_3317 PF00324 Amino acid permease AK38_3318 PF00392 Bacterial regulatory proteins, gntR family AK38_3318 PF07729 FCD domain AK38_3319 PF00456 Transketolase, thiamine diphosphate binding domain AK38_3319 PF17831 Pyruvate dehydrogenase E1 component middle domain AK38_3320 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) AK38_3320 PF00364 Biotin-requiring enzyme AK38_3320 PF02817 e3 binding domain AK38_3321 PF07992 Pyridine nucleotide-disulphide oxidoreductase AK38_3321 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AK38_3322 PF01797 Transposase IS200 like AK38_3323 PF00330 Aconitase family (aconitate hydratase) AK38_3323 PF06434 Aconitate hydratase 2 N-terminus AK38_3323 PF11791 Aconitate B N-terminal domain AK38_3324 PF06062 Uncharacterised protein family (UPF0231) AK38_3325 PF00892 EamA-like transporter family AK38_3326 PF02675 S-adenosylmethionine decarboxylase AK38_3327 PF17284 Spermidine synthase tetramerisation domain AK38_3328 PF09691 Type II secretion system pilotin lipoprotein (PulS_OutS) AK38_3329 PF10518 TAT (twin-arginine translocation) pathway signal sequence AK38_3329 PF07731 Multicopper oxidase AK38_3329 PF07732 Multicopper oxidase AK38_3329 PF00394 Multicopper oxidase AK38_333 PF00480 ROK family AK38_3330 PF00156 Phosphoribosyl transferase domain AK38_3331 PF00484 Carbonic anhydrase AK38_3332 PF00005 ABC transporter AK38_3333 PF01061 ABC-2 type transporter AK38_3334 PF01522 Polysaccharide deacetylase AK38_3335 PF02261 Aspartate decarboxylase AK38_3336 PF02569 Pantoate-beta-alanine ligase AK38_3337 PF02548 Ketopantoate hydroxymethyltransferase AK38_3338 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) AK38_3339 PF12626 Polymerase A arginine-rich C-terminus AK38_3339 PF01743 Poly A polymerase head domain AK38_3339 PF12627 Probable RNA and SrmB- binding site of polymerase A AK38_334 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AK38_334 PF03466 LysR substrate binding domain AK38_3340 PF00749 tRNA synthetases class I (E and Q), catalytic domain AK38_3341 PF01258 Prokaryotic dksA/traR C4-type zinc finger AK38_3342 PF03749 Sugar fermentation stimulation protein RE domain AK38_3342 PF17746 SfsA N-terminal OB domain AK38_3343 PF02834 LigT like Phosphoesterase AK38_3344 PF00270 DEAD/DEAH box helicase AK38_3344 PF04408 Helicase associated domain (HA2) AK38_3344 PF00271 Helicase conserved C-terminal domain AK38_3344 PF08482 ATP-dependent helicase C-terminal AK38_3345 PF00912 Transglycosylase AK38_3345 PF14812 Transmembrane domain of transglycosylase PBP1 at N-terminal AK38_3345 PF14814 Bifunctional transglycosylase second domain AK38_3345 PF00905 Penicillin binding protein transpeptidase domain AK38_3346 PF00005 ABC transporter AK38_3347 PF01497 Periplasmic binding protein AK38_3348 PF01032 FecCD transport family AK38_3349 PF00202 Aminotransferase class-III AK38_335 PF07690 Major Facilitator Superfamily AK38_3350 PF00654 Voltage gated chloride channel AK38_3351 PF01521 Iron-sulphur cluster biosynthesis AK38_3352 PF03458 UPF0126 domain AK38_3353 PF01497 Periplasmic binding protein AK38_3354 PF01048 Phosphorylase superfamily AK38_3355 PF01966 HD domain AK38_3355 PF13286 Phosphohydrolase-associated domain AK38_3356 PF00595 PDZ domain AK38_3357 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) AK38_3357 PF01627 Hpt domain AK38_3357 PF00072 Response regulator receiver domain AK38_3357 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AK38_3357 PF00672 HAMP domain AK38_3357 PF00512 His Kinase A (phospho-acceptor) domain AK38_3358 PF04607 Region found in RelA / SpoT proteins AK38_3358 PF13291 ACT domain AK38_3358 PF02824 TGS domain AK38_3359 PF03819 MazG nucleotide pyrophosphohydrolase domain AK38_336 PF05472 DNA replication terminus site-binding protein (Ter protein) AK38_3360 PF00117 Glutamine amidotransferase class-I AK38_3360 PF06418 CTP synthase N-terminus AK38_3361 PF00113 Enolase, C-terminal TIM barrel domain AK38_3361 PF03952 Enolase, N-terminal domain AK38_3362 PF00080 Copper/zinc superoxide dismutase (SODC) AK38_3363 PF04055 Radical SAM superfamily AK38_3364 PF01242 6-pyruvoyl tetrahydropterin synthase AK38_3365 PF00175 Oxidoreductase NAD-binding domain AK38_3365 PF00667 FAD binding domain AK38_3365 PF00258 Flavodoxin AK38_3366 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain AK38_3366 PF01077 Nitrite and sulphite reductase 4Fe-4S domain AK38_3367 PF01507 Phosphoadenosine phosphosulfate reductase family AK38_3368 PF01507 Phosphoadenosine phosphosulfate reductase family AK38_337 PF00206 Lyase AK38_337 PF10415 Fumarase C C-terminus AK38_3372 PF14824 Sirohaem biosynthesis protein central AK38_3372 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AK38_3372 PF10414 Sirohaem synthase dimerisation region AK38_3373 PF01507 Phosphoadenosine phosphosulfate reductase family AK38_3374 PF00009 Elongation factor Tu GTP binding domain AK38_3376 PF12084 Protein of unknown function (DUF3561) AK38_3377 PF04977 Septum formation initiator AK38_3378 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase AK38_3379 PF02542 YgbB family AK38_338 PF01238 Phosphomannose isomerase type I AK38_3380 PF01142 tRNA pseudouridine synthase D (TruD) AK38_3381 PF01975 Survival protein SurE AK38_3383 PF01476 LysM domain AK38_3383 PF01551 Peptidase family M23 AK38_3384 PF00140 Sigma-70 factor, region 1.2 AK38_3384 PF04545 Sigma-70, region 4 AK38_3384 PF04542 Sigma-70 region 2 AK38_3384 PF04539 Sigma-70 region 3 AK38_3385 PF05190 MutS family domain IV AK38_3385 PF05192 MutS domain III AK38_3385 PF05188 MutS domain II AK38_3385 PF01624 MutS domain I AK38_3385 PF00488 MutS domain V AK38_3386 PF02502 Ribose/Galactose Isomerase AK38_3387 PF08240 Alcohol dehydrogenase GroES-like domain AK38_3387 PF00107 Zinc-binding dehydrogenase AK38_3389 PF02733 Dak1 domain AK38_339 PF06097 Bacterial protein of unknown function (DUF945) AK38_3390 PF02734 DAK2 domain AK38_3391 PF13936 Helix-turn-helix domain AK38_3391 PF04198 Putative sugar-binding domain AK38_3392 PF02040 Arsenical pump membrane protein AK38_3393 PF01022 Bacterial regulatory protein, arsR family AK38_3396 PF00497 Bacterial extracellular solute-binding proteins, family 3 AK38_3397 PF00034 Cytochrome c AK38_3397 PF14376 Haem-binding domain AK38_3397 PF03150 Di-haem cytochrome c peroxidase AK38_3399 PF00593 TonB dependent receptor AK38_3399 PF07715 TonB-dependent Receptor Plug Domain AK38_34 PF17962 Bacterial macroglobulin domain 6 AK38_34 PF17973 Bacterial Alpha-2-macroglobulin MG10 domain AK38_34 PF11974 Bacterial alpha-2-macroglobulin MG3 domain AK38_34 PF17972 Bacterial Alpha-2-macroglobulin MG5 domain AK38_34 PF00207 Alpha-2-macroglobulin family AK38_34 PF01835 MG2 domain AK38_34 PF07703 Alpha-2-macroglobulin bait region domain AK38_3402 PF00557 Metallopeptidase family M24 AK38_3404 PF05681 Fumarate hydratase (Fumerase) AK38_3404 PF05683 Fumarase C-terminus AK38_3405 PF02782 FGGY family of carbohydrate kinases, C-terminal domain AK38_3405 PF00370 FGGY family of carbohydrate kinases, N-terminal domain AK38_3406 PF01261 Xylose isomerase-like TIM barrel AK38_3407 PF02653 Branched-chain amino acid transport system / permease component AK38_3408 PF02653 Branched-chain amino acid transport system / permease component AK38_3409 PF00005 ABC transporter AK38_341 PF13593 SBF-like CPA transporter family (DUF4137) AK38_3410 PF01797 Transposase IS200 like AK38_3412 PF08220 DeoR-like helix-turn-helix domain AK38_3412 PF00455 DeoR C terminal sensor domain AK38_3413 PF00596 Class II Aldolase and Adducin N-terminal domain AK38_3414 PF01568 Molydopterin dinucleotide binding domain AK38_3414 PF04879 Molybdopterin oxidoreductase Fe4S4 domain AK38_3414 PF00384 Molybdopterin oxidoreductase AK38_3415 PF13247 4Fe-4S dicluster domain AK38_3415 PF12800 4Fe-4S binding domain AK38_3416 PF04976 DMSO reductase anchor subunit (DmsC) AK38_3417 PF02613 Nitrate reductase delta subunit AK38_3418 PF01292 Prokaryotic cytochrome b561 AK38_3419 PF07361 Cytochrome b562 AK38_342 PF02894 Oxidoreductase family, C-terminal alpha/beta domain AK38_342 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AK38_3420 PF00141 Peroxidase AK38_3423 PF00005 ABC transporter AK38_3424 PF02653 Branched-chain amino acid transport system / permease component AK38_3425 PF00456 Transketolase, thiamine diphosphate binding domain AK38_3426 PF02780 Transketolase, C-terminal domain AK38_3426 PF02779 Transketolase, pyrimidine binding domain AK38_3427 PF02782 FGGY family of carbohydrate kinases, C-terminal domain AK38_3427 PF00370 FGGY family of carbohydrate kinases, N-terminal domain AK38_343 PF12833 Helix-turn-helix domain AK38_343 PF02311 AraC-like ligand binding domain AK38_3430 PF07690 Major Facilitator Superfamily AK38_3431 PF02464 Competence-damaged protein AK38_3432 PF00154 recA bacterial DNA recombination protein AK38_3433 PF02631 RecX family AK38_3434 PF02272 DHHA1 domain AK38_3434 PF01411 tRNA synthetases class II (A) AK38_3434 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain AK38_3435 PF02599 Global regulator protein family AK38_3439 PF13419 Haloacid dehalogenase-like hydrolase AK38_344 PF02653 Branched-chain amino acid transport system / permease component AK38_3440 PF09335 SNARE associated Golgi protein AK38_3441 PF04262 Glutamate-cysteine ligase AK38_3442 PF02664 S-Ribosylhomocysteinase (LuxS) AK38_3443 PF01797 Transposase IS200 like AK38_3444 PF01797 Transposase IS200 like AK38_3445 PF00571 CBS domain AK38_3445 PF03471 Transporter associated domain AK38_3445 PF01595 Cyclin M transmembrane N-terminal domain AK38_3446 PF01578 Cytochrome C assembly protein AK38_3447 PF02881 SRP54-type protein, helical bundle domain AK38_3447 PF00448 SRP54-type protein, GTPase domain AK38_3447 PF02978 Signal peptide binding domain AK38_3448 PF00886 Ribosomal protein S16 AK38_3449 PF05239 PRC-barrel domain AK38_3449 PF01782 RimM N-terminal domain AK38_345 PF00005 ABC transporter AK38_3450 PF01746 tRNA (Guanine-1)-methyltransferase AK38_3451 PF01245 Ribosomal protein L19 AK38_3452 PF01797 Transposase IS200 like AK38_3453 PF04338 Protein of unknown function, DUF481 AK38_3454 PF03605 Anaerobic c4-dicarboxylate membrane transporter AK38_3455 PF03605 Anaerobic c4-dicarboxylate membrane transporter AK38_3456 PF03605 Anaerobic c4-dicarboxylate membrane transporter AK38_3457 PF00072 Response regulator receiver domain AK38_3457 PF04397 LytTr DNA-binding domain AK38_3458 PF00793 DAHP synthetase I family AK38_3459 PF01817 Chorismate mutase type II AK38_3459 PF02153 Prephenate dehydrogenase AK38_346 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family AK38_3460 PF00800 Prephenate dehydratase AK38_3460 PF01817 Chorismate mutase type II AK38_3461 PF01695 IstB-like ATP binding protein AK38_3462 PF02796 Helix-turn-helix domain of resolvase AK38_3462 PF00665 Integrase core domain AK38_3463 PF01817 Chorismate mutase type II AK38_3463 PF00800 Prephenate dehydratase AK38_3464 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein AK38_3465 PF13525 Outer membrane lipoprotein AK38_3466 PF01479 S4 domain AK38_3466 PF00849 RNA pseudouridylate synthase AK38_3468 PF00004 ATPase family associated with various cellular activities (AAA) AK38_3468 PF07724 AAA domain (Cdc48 subfamily) AK38_3468 PF17871 AAA lid domain AK38_3468 PF02861 Clp amino terminal domain, pathogenicity island component AK38_3468 PF10431 C-terminal, D2-small domain, of ClpB protein AK38_347 PF02782 FGGY family of carbohydrate kinases, C-terminal domain AK38_3475 PF10043 Predicted periplasmic lipoprotein (DUF2279) AK38_3476 PF13091 PLD-like domain AK38_3477 PF13607 Succinyl-CoA ligase like flavodoxin domain AK38_3477 PF13380 CoA binding domain AK38_3477 PF00583 Acetyltransferase (GNAT) family AK38_3479 PF00085 Thioredoxin AK38_348 PF02610 L-arabinose isomerase AK38_348 PF11762 L-arabinose isomerase C-terminal domain AK38_3480 PF00588 SpoU rRNA Methylase family AK38_3480 PF08032 RNA 2'-O ribose methyltransferase substrate binding AK38_3481 PF07690 Major Facilitator Superfamily AK38_3482 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AK38_3482 PF00529 HlyD membrane-fusion protein of T1SS AK38_3483 PF01047 MarR family AK38_3484 PF05437 Branched-chain amino acid transport protein (AzlD) AK38_3485 PF03591 AzlC protein AK38_3486 PF07690 Major Facilitator Superfamily AK38_3488 PF01425 Amidase AK38_3491 PF00497 Bacterial extracellular solute-binding proteins, family 3 AK38_3492 PF00528 Binding-protein-dependent transport system inner membrane component AK38_3494 PF00005 ABC transporter AK38_3495 PF00266 Aminotransferase class-V AK38_3496 PF01695 IstB-like ATP binding protein AK38_3497 PF00665 Integrase core domain AK38_3497 PF02796 Helix-turn-helix domain of resolvase AK38_3498 PF00266 Aminotransferase class-V AK38_3499 PF01546 Peptidase family M20/M25/M40 AK38_3499 PF07687 Peptidase dimerisation domain AK38_35 PF00912 Transglycosylase AK38_35 PF06832 Penicillin-Binding Protein C-terminus Family AK38_35 PF00905 Penicillin binding protein transpeptidase domain AK38_350 PF00005 ABC transporter AK38_350 PF00664 ABC transporter transmembrane region AK38_350 PF03412 Peptidase C39 family AK38_3500 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB AK38_3500 PF08479 POTRA domain, ShlB-type AK38_3501 PF05860 haemagglutination activity domain AK38_3502 PF18071 HMW1C N-terminal AK38_3502 PF18254 HMW1 domain 2 AK38_3504 PF09317 Domain of unknown function (DUF1974) AK38_3504 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AK38_3504 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AK38_3505 PF13580 SIS domain AK38_3506 PF03734 L,D-transpeptidase catalytic domain AK38_3507 PF13230 Glutamine amidotransferases class-II AK38_3508 PF11973 NQRA C-terminal domain AK38_3508 PF05896 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) AK38_3509 PF03116 NQR2, RnfD, RnfE family AK38_3510 PF04205 FMN-binding domain AK38_3511 PF02508 Rnf-Nqr subunit, membrane protein AK38_3512 PF02508 Rnf-Nqr subunit, membrane protein AK38_3513 PF00970 Oxidoreductase FAD-binding domain AK38_3513 PF00175 Oxidoreductase NAD-binding domain AK38_3513 PF00111 2Fe-2S iron-sulfur cluster binding domain AK38_3514 PF02424 ApbE family AK38_3516 PF03009 Glycerophosphoryl diester phosphodiesterase family AK38_3517 PF00817 impB/mucB/samB family AK38_3517 PF11798 IMS family HHH motif AK38_3517 PF11799 impB/mucB/samB family C-terminal domain AK38_3518 PF07687 Peptidase dimerisation domain AK38_3518 PF01546 Peptidase family M20/M25/M40 AK38_352 PF13533 Biotin-lipoyl like AK38_3522 PF00156 Phosphoribosyl transferase domain AK38_3524 PF07417 Sigma factor-binding transcriptional regulator Crl AK38_3525 PF01472 PUA domain AK38_3525 PF00696 Amino acid kinase family AK38_3526 PF00171 Aldehyde dehydrogenase family AK38_3527 PF07238 PilZ domain AK38_3527 PF07317 Flagellar regulator YcgR AK38_3529 PF08241 Methyltransferase domain AK38_353 PF00664 ABC transporter transmembrane region AK38_353 PF00005 ABC transporter AK38_353 PF03412 Peptidase C39 family AK38_3531 PF01202 Shikimate kinase AK38_3532 PF06865 Pyrimidine/purine nucleoside phosphorylase AK38_3533 PF04381 Putative exonuclease, RdgC AK38_3534 PF00480 ROK family AK38_3535 PF00665 Integrase core domain AK38_3535 PF02796 Helix-turn-helix domain of resolvase AK38_3536 PF01695 IstB-like ATP binding protein AK38_3537 PF01695 IstB-like ATP binding protein AK38_3538 PF13476 AAA domain AK38_3539 PF12320 Type 5 capsule protein repressor C-terminal domain AK38_3539 PF00149 Calcineurin-like phosphoesterase AK38_354 PF10754 Protein of unknown function (DUF2569) AK38_3540 PF00486 Transcriptional regulatory protein, C terminal AK38_3540 PF00072 Response regulator receiver domain AK38_3541 PF00512 His Kinase A (phospho-acceptor) domain AK38_3541 PF00989 PAS fold AK38_3541 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AK38_3541 PF11808 Phosphate regulon sensor protein PhoR AK38_3542 PF12849 PBP superfamily domain AK38_3543 PF05525 Branched-chain amino acid transport protein AK38_3544 PF00324 Amino acid permease AK38_3545 PF00128 Alpha amylase, catalytic domain AK38_3545 PF02903 Alpha amylase, N-terminal ig-like domain AK38_3549 PF01797 Transposase IS200 like AK38_355 PF02508 Rnf-Nqr subunit, membrane protein AK38_3550 PF00578 AhpC/TSA family AK38_3550 PF10417 C-terminal domain of 1-Cys peroxiredoxin AK38_3551 PF04336 Acyl carrier protein phosphodiesterase AK38_3552 PF02547 Queuosine biosynthesis protein AK38_3553 PF01702 Queuine tRNA-ribosyltransferase AK38_3554 PF02699 Preprotein translocase subunit AK38_3555 PF13721 SecD export protein N-terminal TM region AK38_3555 PF07549 SecD/SecF GG Motif AK38_3555 PF02355 Protein export membrane protein AK38_3556 PF02355 Protein export membrane protein AK38_3556 PF07549 SecD/SecF GG Motif AK38_3557 PF01797 Transposase IS200 like AK38_356 PF04060 Putative Fe-S cluster AK38_3560 PF03477 ATP cone domain AK38_3561 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region AK38_3561 PF01872 RibD C-terminal domain AK38_3562 PF00885 6,7-dimethyl-8-ribityllumazine synthase AK38_3563 PF01029 NusB family AK38_3564 PF00586 AIR synthase related protein, N-terminal domain AK38_3564 PF02769 AIR synthase related protein, C-terminal domain AK38_3565 PF04608 Phosphatidylglycerophosphatase A AK38_3566 PF01797 Transposase IS200 like AK38_3567 PF02780 Transketolase, C-terminal domain AK38_3567 PF13292 1-deoxy-D-xylulose-5-phosphate synthase AK38_3567 PF02779 Transketolase, pyrimidine binding domain AK38_3568 PF00348 Polyprenyl synthetase AK38_3569 PF02609 Exonuclease VII small subunit AK38_357 PF13237 4Fe-4S dicluster domain AK38_357 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit AK38_357 PF10531 SLBB domain AK38_357 PF13375 RnfC Barrel sandwich hybrid domain AK38_3570 PF02926 THUMP domain AK38_3570 PF02568 Thiamine biosynthesis protein (ThiI) AK38_3571 PF01965 DJ-1/PfpI family AK38_3572 PF08546 Ketopantoate reductase PanE/ApbA C terminal AK38_3572 PF02558 Ketopantoate reductase PanE/ApbA AK38_3573 PF04461 Protein of unknown function (DUF520) AK38_3574 PF07690 Major Facilitator Superfamily AK38_3575 PF01040 UbiA prenyltransferase family AK38_3576 PF03626 Prokaryotic Cytochrome C oxidase subunit IV AK38_3577 PF00510 Cytochrome c oxidase subunit III AK38_3578 PF00115 Cytochrome C and Quinol oxidase polypeptide I AK38_3579 PF00116 Cytochrome C oxidase subunit II, periplasmic domain AK38_3579 PF06481 COX Aromatic Rich Motif AK38_358 PF12833 Helix-turn-helix domain AK38_358 PF06445 GyrI-like small molecule binding domain AK38_3580 PF03502 Nucleoside-specific channel-forming protein, Tsx AK38_3581 PF07690 Major Facilitator Superfamily AK38_3582 PF03923 Uncharacterized lipoprotein AK38_3582 PF08139 Prokaryotic membrane lipoprotein lipid attachment site AK38_3583 PF01722 BolA-like protein AK38_3585 PF05698 Bacterial trigger factor protein (TF) C-terminus AK38_3585 PF05697 Bacterial trigger factor protein (TF) AK38_3585 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AK38_3586 PF00574 Clp protease AK38_3587 PF10431 C-terminal, D2-small domain, of ClpB protein AK38_3587 PF06689 ClpX C4-type zinc finger AK38_3587 PF07724 AAA domain (Cdc48 subfamily) AK38_3588 PF02190 ATP-dependent protease La (LON) substrate-binding domain AK38_3588 PF00004 ATPase family associated with various cellular activities (AAA) AK38_3588 PF05362 Lon protease (S16) C-terminal proteolytic domain AK38_3589 PF00216 Bacterial DNA-binding protein AK38_359 PF03116 NQR2, RnfD, RnfE family AK38_3590 PF13145 PPIC-type PPIASE domain AK38_3593 PF06508 Queuosine biosynthesis protein QueC AK38_3594 PF12793 Sugar transport-related sRNA regulator N-term AK38_3594 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AK38_3596 PF00291 Pyridoxal-phosphate dependent enzyme AK38_3597 PF13404 AsnC-type helix-turn-helix domain AK38_3597 PF01037 Lrp/AsnC ligand binding domain AK38_3598 PF00005 ABC transporter AK38_3598 PF00664 ABC transporter transmembrane region AK38_3599 PF00664 ABC transporter transmembrane region AK38_3599 PF00005 ABC transporter AK38_360 PF04205 FMN-binding domain AK38_3600 PF00543 Nitrogen regulatory protein P-II AK38_3601 PF00909 Ammonium Transporter Family AK38_3603 PF09619 Type III secretion system lipoprotein chaperone (YscW) AK38_3604 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain AK38_3605 PF05321 Haemolysin expression modulating protein AK38_3606 PF10757 Biofilm formation regulator YbaJ AK38_3608 PF00444 Ribosomal protein L36 AK38_3609 PF01197 Ribosomal protein L31 AK38_361 PF02508 Rnf-Nqr subunit, membrane protein AK38_3610 PF00873 AcrB/AcrD/AcrF family AK38_3611 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AK38_3611 PF00529 HlyD membrane-fusion protein of T1SS AK38_3612 PF08361 MAATS-type transcriptional repressor, C-terminal region AK38_3612 PF00440 Bacterial regulatory proteins, tetR family AK38_3613 PF02635 DsrE/DsrF-like family AK38_3614 PF00924 Mechanosensitive ion channel AK38_3614 PF12794 Mechanosensitive ion channel inner membrane domain 1 AK38_3614 PF12795 Mechanosensitive ion channel porin domain AK38_3616 PF04304 Protein of unknown function (DUF454) AK38_3617 PF00665 Integrase core domain AK38_3617 PF02796 Helix-turn-helix domain of resolvase AK38_3618 PF01695 IstB-like ATP binding protein AK38_3619 PF00156 Phosphoribosyl transferase domain AK38_362 PF00730 HhH-GPD superfamily base excision DNA repair protein AK38_362 PF00633 Helix-hairpin-helix motif AK38_362 PF10576 Iron-sulfur binding domain of endonuclease III AK38_3620 PF12170 DNA polymerase III tau subunit V interacting with alpha AK38_3620 PF12169 DNA polymerase III subunits gamma and tau domain III AK38_3620 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding AK38_3621 PF02575 YbaB/EbfC DNA-binding family AK38_3622 PF13662 Toprim domain AK38_3622 PF02132 RecR protein AK38_3623 PF00183 Hsp90 protein AK38_3623 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AK38_3624 PF05191 Adenylate kinase, active site lid AK38_3625 PF00762 Ferrochelatase AK38_3626 PF00175 Oxidoreductase NAD-binding domain AK38_3626 PF00111 2Fe-2S iron-sulfur cluster binding domain AK38_3626 PF00970 Oxidoreductase FAD-binding domain AK38_3627 PF00483 Nucleotidyl transferase AK38_3628 PF16363 GDP-mannose 4,6 dehydratase AK38_3629 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family AK38_363 PF01370 NAD dependent epimerase/dehydratase family AK38_3630 PF01370 NAD dependent epimerase/dehydratase family AK38_3638 PF13439 Glycosyltransferase Family 4 AK38_3638 PF00534 Glycosyl transferases group 1 AK38_3639 PF16363 GDP-mannose 4,6 dehydratase AK38_364 PF07690 Major Facilitator Superfamily AK38_3640 PF16363 GDP-mannose 4,6 dehydratase AK38_3643 PF00483 Nucleotidyl transferase AK38_3643 PF01050 Mannose-6-phosphate isomerase AK38_3644 PF00535 Glycosyl transferase family 2 AK38_3645 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain AK38_3645 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III AK38_3645 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I AK38_3645 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II AK38_3646 PF02706 Chain length determinant protein AK38_3647 PF00294 pfkB family carbohydrate kinase AK38_3648 PF00999 Sodium/hydrogen exchanger family AK38_3648 PF02254 TrkA-N domain AK38_3649 PF07690 Major Facilitator Superfamily AK38_365 PF17876 Cold shock domain AK38_365 PF08206 Ribonuclease B OB domain AK38_365 PF00773 RNB domain AK38_365 PF00575 S1 RNA binding domain AK38_3650 PF02872 5'-nucleotidase, C-terminal domain AK38_3650 PF00149 Calcineurin-like phosphoesterase AK38_3651 PF00149 Calcineurin-like phosphoesterase AK38_3651 PF02872 5'-nucleotidase, C-terminal domain AK38_3652 PF02872 5'-nucleotidase, C-terminal domain AK38_3652 PF00149 Calcineurin-like phosphoesterase AK38_3655 PF04073 Aminoacyl-tRNA editing domain AK38_3656 PF01963 TraB family AK38_3657 PF00403 Heavy-metal-associated domain AK38_3658 PF13411 MerR HTH family regulatory protein AK38_3659 PF01957 NfeD-like C-terminal, partner-binding AK38_366 PF13722 5TM C-terminal transporter carbon starvation CstA AK38_366 PF02554 Carbon starvation protein CstA AK38_3660 PF01145 SPFH domain / Band 7 family AK38_3660 PF16200 C-terminal region of band_7 AK38_3661 PF00085 Thioredoxin AK38_3662 PF00106 short chain dehydrogenase AK38_3663 PF13472 GDSL-like Lipase/Acylhydrolase family AK38_3664 PF00005 ABC transporter AK38_3666 PF02222 ATP-grasp domain AK38_3666 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain AK38_3667 PF00731 AIR carboxylase AK38_3668 PF00149 Calcineurin-like phosphoesterase AK38_3669 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD AK38_367 PF04328 Selenoprotein, putative AK38_3670 PF01406 tRNA synthetases class I (C) catalytic domain AK38_3670 PF09190 DALR domain AK38_3672 PF01797 Transposase IS200 like AK38_3673 PF00308 Bacterial dnaA protein AK38_3674 PF03960 ArsC family AK38_3675 PF01435 Peptidase family M48 AK38_3675 PF07720 Tetratricopeptide repeat AK38_3676 PF01594 AI-2E family transporter AK38_3679 PF00578 AhpC/TSA family AK38_368 PF00923 Transaldolase/Fructose-6-phosphate aldolase AK38_3680 PF01842 ACT domain AK38_3681 PF00701 Dihydrodipicolinate synthetase family AK38_3682 PF06804 NlpB/DapX lipoprotein AK38_3683 PF01797 Transposase IS200 like AK38_3684 PF01259 SAICAR synthetase AK38_3685 PF04228 Putative neutral zinc metallopeptidase AK38_3686 PF04284 Protein of unknown function (DUF441) AK38_3687 PF17176 tRNA-binding domain AK38_3687 PF08351 Domain of unknown function (DUF1726) AK38_3687 PF13718 GNAT acetyltransferase 2 AK38_3687 PF05127 Helicase AK38_3688 PF13980 Uncharacterised protein family (UPF0370) AK38_3689 PF02557 D-alanyl-D-alanine carboxypeptidase AK38_3690 PF07687 Peptidase dimerisation domain AK38_3690 PF01546 Peptidase family M20/M25/M40 AK38_3691 PF03960 ArsC family AK38_3694 PF00528 Binding-protein-dependent transport system inner membrane component AK38_3695 PF00005 ABC transporter AK38_3695 PF08402 TOBE domain AK38_3696 PF00884 Sulfatase AK38_3697 PF13186 Iron-sulfur cluster-binding domain AK38_3697 PF04055 Radical SAM superfamily AK38_3698 PF04307 LexA-binding, inner membrane-associated putative hydrolase AK38_370 PF00596 Class II Aldolase and Adducin N-terminal domain AK38_3700 PF00873 AcrB/AcrD/AcrF family AK38_3702 PF00072 Response regulator receiver domain AK38_3702 PF00196 Bacterial regulatory proteins, luxR family AK38_3703 PF12800 4Fe-4S binding domain AK38_3703 PF00037 4Fe-4S binding domain AK38_3703 PF13187 4Fe-4S dicluster domain AK38_3704 PF03927 NapD protein AK38_3705 PF04879 Molybdopterin oxidoreductase Fe4S4 domain AK38_3705 PF10518 TAT (twin-arginine translocation) pathway signal sequence AK38_3705 PF00384 Molybdopterin oxidoreductase AK38_3705 PF01568 Molydopterin dinucleotide binding domain AK38_3706 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) AK38_3707 PF03264 NapC/NirT cytochrome c family, N-terminal region AK38_3708 PF00293 NUDIX domain AK38_3709 PF01515 Phosphate acetyl/butaryl transferase AK38_3709 PF00390 Malic enzyme, N-terminal domain AK38_3709 PF03949 Malic enzyme, NAD binding domain AK38_371 PF05433 Glycine zipper 2TM domain AK38_3710 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 AK38_3711 PF01218 Coproporphyrinogen III oxidase AK38_3712 PF00583 Acetyltransferase (GNAT) family AK38_3715 PF03212 Pertactin AK38_3715 PF16168 Adhesin of bacterial autotransporter system, probable stalk AK38_3715 PF13018 Extended Signal Peptide of Type V secretion system AK38_3715 PF03797 Autotransporter beta-domain AK38_3716 PF04076 Bacterial OB fold (BOF) protein AK38_3717 PF06572 Protein of unknown function (DUF1131) AK38_3718 PF04261 Dyp-type peroxidase family AK38_3719 PF00701 Dihydrodipicolinate synthetase family AK38_372 PF01253 Translation initiation factor SUI1 AK38_3720 PF04131 Putative N-acetylmannosamine-6-phosphate epimerase AK38_3721 PF12468 Type III secretion system leucine rich repeat protein AK38_3722 PF00480 ROK family AK38_3723 PF04074 YhcH/YjgK/YiaL AK38_3724 PF01380 SIS domain AK38_3724 PF01418 Helix-turn-helix domain, rpiR family AK38_3725 PF07690 Major Facilitator Superfamily AK38_3727 PF00528 Binding-protein-dependent transport system inner membrane component AK38_3728 PF00528 Binding-protein-dependent transport system inner membrane component AK38_3729 PF00005 ABC transporter AK38_373 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family AK38_3730 PF00291 Pyridoxal-phosphate dependent enzyme AK38_3732 PF00072 Response regulator receiver domain AK38_3732 PF00486 Transcriptional regulatory protein, C terminal AK38_3733 PF00512 His Kinase A (phospho-acceptor) domain AK38_3733 PF00672 HAMP domain AK38_3733 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AK38_3735 PF00155 Aminotransferase class I and II AK38_3737 PF00557 Metallopeptidase family M24 AK38_3739 PF00474 Sodium:solute symporter family AK38_3740 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AK38_3740 PF07992 Pyridine nucleotide-disulphide oxidoreductase AK38_3741 PF00005 ABC transporter AK38_3741 PF12704 MacB-like periplasmic core domain AK38_3741 PF02687 FtsX-like permease family AK38_3742 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AK38_3743 PF00486 Transcriptional regulatory protein, C terminal AK38_3743 PF00072 Response regulator receiver domain AK38_3744 PF00512 His Kinase A (phospho-acceptor) domain AK38_3744 PF16527 Two-component sensor protein CpxA, periplasmic domain AK38_3744 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AK38_3744 PF00672 HAMP domain AK38_3746 PF01797 Transposase IS200 like AK38_3747 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 AK38_3748 PF02896 PEP-utilising enzyme, TIM barrel domain AK38_3748 PF00391 PEP-utilising enzyme, mobile domain AK38_3748 PF05524 PEP-utilising enzyme, N-terminal AK38_3749 PF00381 PTS HPr component phosphorylation site AK38_375 PF18073 Rubredoxin metal binding domain AK38_3750 PF00291 Pyridoxal-phosphate dependent enzyme AK38_3752 PF04354 ZipA, C-terminal FtsZ-binding domain AK38_3753 PF01653 NAD-dependent DNA ligase adenylation domain AK38_3753 PF00533 BRCA1 C Terminus (BRCT) domain AK38_3753 PF03120 NAD-dependent DNA ligase OB-fold domain AK38_3753 PF12826 Helix-hairpin-helix motif AK38_3753 PF03119 NAD-dependent DNA ligase C4 zinc finger domain AK38_3754 PF12843 Putative quorum-sensing-regulated virulence factor AK38_376 PF06305 Lipopolysaccharide assembly protein A domain AK38_3760 PF01797 Transposase IS200 like AK38_3761 PF00749 tRNA synthetases class I (E and Q), catalytic domain AK38_3766 PF07662 Na+ dependent nucleoside transporter C-terminus AK38_3766 PF01773 Na+ dependent nucleoside transporter N-terminus AK38_3766 PF07670 Nucleoside recognition AK38_3767 PF01566 Natural resistance-associated macrophage protein AK38_3769 PF00248 Aldo/keto reductase family AK38_377 PF01569 PAP2 superfamily AK38_3770 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AK38_3770 PF03466 LysR substrate binding domain AK38_3772 PF02685 Glucokinase AK38_3773 PF07350 Protein of unknown function (DUF1479) AK38_3774 PF00155 Aminotransferase class I and II AK38_3775 PF01292 Prokaryotic cytochrome b561 AK38_3777 PF03783 Curli production assembly/transport component CsgG AK38_3779 PF05643 Putative bacterial lipoprotein (DUF799) AK38_378 PF00925 GTP cyclohydrolase II AK38_3781 PF02613 Nitrate reductase delta subunit AK38_3782 PF04976 DMSO reductase anchor subunit (DmsC) AK38_3783 PF13247 4Fe-4S dicluster domain AK38_3783 PF12800 4Fe-4S binding domain AK38_3784 PF00384 Molybdopterin oxidoreductase AK38_3784 PF01568 Molydopterin dinucleotide binding domain AK38_3784 PF04879 Molybdopterin oxidoreductase Fe4S4 domain AK38_3786 PF05638 Type VI secretion system effector, Hcp AK38_3788 PF00005 ABC transporter AK38_3789 PF00528 Binding-protein-dependent transport system inner membrane component AK38_379 PF00694 Aconitase C-terminal domain AK38_379 PF00330 Aconitase family (aconitate hydratase) AK38_3791 PF13406 Transglycosylase SLT domain AK38_3801 PF10431 C-terminal, D2-small domain, of ClpB protein AK38_3801 PF17871 AAA lid domain AK38_3801 PF07724 AAA domain (Cdc48 subfamily) AK38_3801 PF00004 ATPase family associated with various cellular activities (AAA) AK38_3802 PF16970 Type-1 fimbrial protein, A AK38_3803 PF02753 Pili assembly chaperone PapD, C-terminal domain AK38_3803 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain AK38_3804 PF13954 PapC N-terminal domain AK38_3804 PF00577 Outer membrane usher protein AK38_3804 PF13953 PapC C-terminal domain AK38_3805 PF00872 Transposase, Mutator family AK38_3806 PF00577 Outer membrane usher protein AK38_3806 PF13954 PapC N-terminal domain AK38_3806 PF13953 PapC C-terminal domain AK38_381 PF03466 LysR substrate binding domain AK38_381 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AK38_3814 PF00665 Integrase core domain AK38_3814 PF02796 Helix-turn-helix domain of resolvase AK38_3815 PF01695 IstB-like ATP binding protein AK38_3816 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ AK38_3817 PF01648 4'-phosphopantetheinyl transferase superfamily AK38_3818 PF01797 Transposase IS200 like AK38_3819 PF12838 4Fe-4S dicluster domain AK38_382 PF01751 Toprim domain AK38_382 PF08272 Topoisomerase I zinc-ribbon-like AK38_382 PF01131 DNA topoisomerase AK38_382 PF01396 Topoisomerase DNA binding C4 zinc finger AK38_3820 PF01380 SIS domain AK38_3820 PF01418 Helix-turn-helix domain, rpiR family AK38_3821 PF01380 SIS domain AK38_3823 PF14437 MafB19-like deaminase AK38_3824 PF01464 Transglycosylase SLT domain AK38_3824 PF00497 Bacterial extracellular solute-binding proteins, family 3 AK38_3825 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal AK38_3825 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain AK38_3825 PF02769 AIR synthase related protein, C-terminal domain AK38_3829 PF01797 Transposase IS200 like AK38_3830 PF00512 His Kinase A (phospho-acceptor) domain AK38_3830 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AK38_3831 PF13942 YfhG lipoprotein AK38_3832 PF00072 Response regulator receiver domain AK38_3832 PF00158 Sigma-54 interaction domain AK38_3833 PF02540 NAD synthase AK38_3833 PF00795 Carbon-nitrogen hydrolase AK38_3834 PF00543 Nitrogen regulatory protein P-II AK38_3837 PF00970 Oxidoreductase FAD-binding domain AK38_3837 PF00042 Globin AK38_3837 PF00175 Oxidoreductase NAD-binding domain AK38_3838 PF00464 Serine hydroxymethyltransferase AK38_3839 PF13505 Outer membrane protein beta-barrel domain AK38_384 PF10692 Protein of unknown function (DUF2498) AK38_3840 PF00874 PRD domain AK38_3841 PF12832 MFS_1 like family AK38_3842 PF06226 Protein of unknown function (DUF1007) AK38_3843 PF03824 High-affinity nickel-transport protein AK38_3844 PF01797 Transposase IS200 like AK38_3845 PF00459 Inositol monophosphatase family AK38_3846 PF00588 SpoU rRNA Methylase family AK38_3847 PF02082 Transcriptional regulator AK38_3848 PF00266 Aminotransferase class-V AK38_3849 PF01592 NifU-like N terminal domain AK38_385 PF08496 Peptidase family S49 N-terminal AK38_385 PF01343 Peptidase family S49 AK38_3850 PF01521 Iron-sulphur cluster biosynthesis AK38_3851 PF07743 HSCB C-terminal oligomerisation domain AK38_3851 PF00226 DnaJ domain AK38_3852 PF00012 Hsp70 protein AK38_3853 PF00111 2Fe-2S iron-sulfur cluster binding domain AK38_3854 PF04384 Iron-sulphur cluster assembly AK38_3855 PF00883 Cytosol aminopeptidase family, catalytic domain AK38_3855 PF12404 Peptidase AK38_3856 PF07179 SseB protein N-terminal domain AK38_3856 PF14581 SseB protein C-terminal domain AK38_3858 PF16168 Adhesin of bacterial autotransporter system, probable stalk AK38_3858 PF03797 Autotransporter beta-domain AK38_3858 PF03212 Pertactin AK38_3859 PF03212 Pertactin AK38_3859 PF16168 Adhesin of bacterial autotransporter system, probable stalk AK38_3859 PF03797 Autotransporter beta-domain AK38_386 PF00106 short chain dehydrogenase AK38_3861 PF00334 Nucleoside diphosphate kinase AK38_3862 PF04055 Radical SAM superfamily AK38_3864 PF13464 Domain of unknown function (DUF4115) AK38_3865 PF04551 GcpE protein AK38_3866 PF03129 Anticodon binding domain AK38_3866 PF13393 Histidyl-tRNA synthetase AK38_3867 PF09976 Tetratricopeptide repeat-like domain AK38_3868 PF13360 PQQ-like domain AK38_3869 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal AK38_3869 PF01926 50S ribosome-binding GTPase AK38_387 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP AK38_3871 PF07191 zinc-ribbons AK38_3872 PF02601 Exonuclease VII, large subunit AK38_3872 PF13742 OB-fold nucleic acid binding domain AK38_3873 PF00478 IMP dehydrogenase / GMP reductase domain AK38_3873 PF00571 CBS domain AK38_3874 PF02540 NAD synthase AK38_3874 PF00117 Glutamine amidotransferase class-I AK38_3874 PF00958 GMP synthase C terminal domain AK38_3875 PF01797 Transposase IS200 like AK38_3876 PF05638 Type VI secretion system effector, Hcp AK38_388 PF00849 RNA pseudouridylate synthase AK38_388 PF01479 S4 domain AK38_3882 PF00872 Transposase, Mutator family AK38_3885 PF08543 Phosphomethylpyrimidine kinase AK38_3889 PF00781 Diacylglycerol kinase catalytic domain AK38_389 PF01300 Telomere recombination AK38_3891 PF07411 Domain of unknown function (DUF1508) AK38_3892 PF00072 Response regulator receiver domain AK38_3892 PF00486 Transcriptional regulatory protein, C terminal AK38_3893 PF00672 HAMP domain AK38_3893 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AK38_3893 PF00512 His Kinase A (phospho-acceptor) domain AK38_3894 PF07690 Major Facilitator Superfamily AK38_3895 PF00873 AcrB/AcrD/AcrF family AK38_3896 PF00873 AcrB/AcrD/AcrF family AK38_3897 PF13533 Biotin-lipoyl like AK38_3898 PF08402 TOBE domain AK38_3898 PF00005 ABC transporter AK38_3899 PF00392 Bacterial regulatory proteins, gntR family AK38_3899 PF00155 Aminotransferase class I and II AK38_39 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 AK38_390 PF02811 PHP domain AK38_3900 PF00202 Aminotransferase class-III AK38_3902 PF00528 Binding-protein-dependent transport system inner membrane component AK38_3903 PF00528 Binding-protein-dependent transport system inner membrane component AK38_3904 PF00012 Hsp70 protein AK38_3905 PF03448 MgtE intracellular N domain AK38_3905 PF00571 CBS domain AK38_3905 PF01769 Divalent cation transporter AK38_3906 PF02541 Ppx/GppA phosphatase family AK38_3907 PF13090 Polyphosphate kinase C-terminal domain 2 AK38_3907 PF17941 Polyphosphate kinase C-terminal domain 1 AK38_3907 PF13089 Polyphosphate kinase N-terminal domain AK38_3907 PF02503 Polyphosphate kinase middle domain AK38_3908 PF00528 Binding-protein-dependent transport system inner membrane component AK38_3909 PF00528 Binding-protein-dependent transport system inner membrane component AK38_391 PF04715 Anthranilate synthase component I, N terminal region AK38_391 PF00425 chorismate binding enzyme AK38_3910 PF00005 ABC transporter AK38_3913 PF13302 Acetyltransferase (GNAT) domain AK38_3914 PF00551 Formyl transferase AK38_3915 PF02769 AIR synthase related protein, C-terminal domain AK38_3915 PF00586 AIR synthase related protein, N-terminal domain AK38_3917 PF01797 Transposase IS200 like AK38_3919 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain AK38_3919 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain AK38_392 PF00117 Glutamine amidotransferase class-I AK38_3926 PF01066 CDP-alcohol phosphatidyltransferase AK38_3928 PF01553 Acyltransferase AK38_3929 PF12147 Putative methyltransferase AK38_3929 PF12146 Serine aminopeptidase, S33 AK38_393 PF02885 Glycosyl transferase family, helical bundle domain AK38_393 PF00591 Glycosyl transferase family, a/b domain AK38_3930 PF00782 Dual specificity phosphatase, catalytic domain AK38_3933 PF01695 IstB-like ATP binding protein AK38_3934 PF02796 Helix-turn-helix domain of resolvase AK38_3934 PF00665 Integrase core domain AK38_3935 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AK38_3935 PF03466 LysR substrate binding domain AK38_3936 PF00248 Aldo/keto reductase family AK38_3937 PF00248 Aldo/keto reductase family AK38_3939 PF01915 Glycosyl hydrolase family 3 C-terminal domain AK38_3939 PF14310 Fibronectin type III-like domain AK38_3939 PF00933 Glycosyl hydrolase family 3 N terminal domain AK38_394 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase AK38_394 PF00218 Indole-3-glycerol phosphate synthase AK38_3942 PF00872 Transposase, Mutator family AK38_3943 PF08007 Cupin superfamily protein AK38_3945 PF03212 Pertactin AK38_3945 PF16168 Adhesin of bacterial autotransporter system, probable stalk AK38_3945 PF13018 Extended Signal Peptide of Type V secretion system AK38_3945 PF03797 Autotransporter beta-domain AK38_3948 PF05638 Type VI secretion system effector, Hcp AK38_395 PF00291 Pyridoxal-phosphate dependent enzyme AK38_3952 PF13693 Winged helix-turn-helix DNA-binding AK38_3953 PF06832 Penicillin-Binding Protein C-terminus Family AK38_3953 PF00912 Transglycosylase AK38_3953 PF00905 Penicillin binding protein transpeptidase domain AK38_3954 PF00872 Transposase, Mutator family AK38_3956 PF03611 PTS system sugar-specific permease component AK38_3957 PF00293 NUDIX domain AK38_3958 PF12850 Calcineurin-like phosphoesterase superfamily domain AK38_396 PF00290 Tryptophan synthase alpha chain AK38_3960 PF08338 Domain of unknown function (DUF1731) AK38_3960 PF01370 NAD dependent epimerase/dehydratase family AK38_3961 PF00005 ABC transporter AK38_3962 PF00528 Binding-protein-dependent transport system inner membrane component AK38_3963 PF00528 Binding-protein-dependent transport system inner membrane component AK38_3964 PF00497 Bacterial extracellular solute-binding proteins, family 3 AK38_3965 PF02441 Flavoprotein AK38_3966 PF00156 Phosphoribosyl transferase domain AK38_3967 PF02674 Colicin V production protein AK38_3968 PF05036 Sporulation related domain AK38_3969 PF08245 Mur ligase middle domain AK38_3969 PF02875 Mur ligase family, glutamate ligase domain AK38_3970 PF01039 Carboxyl transferase domain AK38_3970 PF17848 Acetyl-coA carboxylase zinc finger domain AK38_3971 PF09335 SNARE associated Golgi protein AK38_3972 PF01416 tRNA pseudouridine synthase AK38_3973 PF02774 Semialdehyde dehydrogenase, dimerisation domain AK38_3973 PF01118 Semialdehyde dehydrogenase, NAD binding domain AK38_3974 PF01797 Transposase IS200 like AK38_3975 PF11890 Domain of unknown function (DUF3410) AK38_3975 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AK38_3975 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AK38_3977 PF00892 EamA-like transporter family AK38_3979 PF00419 Fimbrial protein AK38_398 PF03922 OmpW family AK38_3980 PF01177 Asp/Glu/Hydantoin racemase AK38_3981 PF00109 Beta-ketoacyl synthase, N-terminal domain AK38_3981 PF02801 Beta-ketoacyl synthase, C-terminal domain AK38_3982 PF05430 S-adenosyl-L-methionine-dependent methyltransferase AK38_3982 PF01266 FAD dependent oxidoreductase AK38_3983 PF08891 YfcL protein AK38_3984 PF04315 Elongation factor P hydroxylase AK38_3985 PF01925 Sulfite exporter TauE/SafE AK38_3986 PF03411 Penicillin-insensitive murein endopeptidase AK38_3987 PF01264 Chorismate synthase AK38_3988 PF05175 Methyltransferase small domain AK38_3989 PF01713 Smr domain AK38_3990 PF00300 Histidine phosphatase superfamily (branch 1) AK38_3991 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain AK38_3991 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AK38_3991 PF00378 Enoyl-CoA hydratase/isomerase AK38_3992 PF00108 Thiolase, N-terminal domain AK38_3992 PF02803 Thiolase, C-terminal domain AK38_3993 PF04175 Protein of unknown function (DUF406) AK38_3994 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) AK38_3995 PF04333 MlaA lipoprotein AK38_3996 PF03918 Cytochrome C biogenesis protein AK38_3997 PF03918 Cytochrome C biogenesis protein AK38_3998 PF08534 Redoxin AK38_3999 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal AK38_3999 PF01578 Cytochrome C assembly protein AK38_4 PF05036 Sporulation related domain AK38_4 PF03330 Lytic transglycolase AK38_40 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family AK38_40 PF00356 Bacterial regulatory proteins, lacI family AK38_4000 PF03100 CcmE AK38_4001 PF04995 Heme exporter protein D (CcmD) AK38_4002 PF01578 Cytochrome C assembly protein AK38_4003 PF03379 CcmB protein AK38_4004 PF00005 ABC transporter AK38_4007 PF04011 LemA family AK38_4009 PF08274 PhnA Zinc-Ribbon AK38_4009 PF03831 PhnA domain AK38_4015 PF04717 Type VI secretion system, phage-baseplate injector AK38_4018 PF01695 IstB-like ATP binding protein AK38_4019 PF00665 Integrase core domain AK38_4019 PF02796 Helix-turn-helix domain of resolvase AK38_402 PF04279 Intracellular septation protein A AK38_4020 PF02565 Recombination protein O C terminal AK38_4020 PF11967 Recombination protein O N terminal AK38_4021 PF01926 50S ribosome-binding GTPase AK38_4021 PF07650 KH domain AK38_4022 PF00035 Double-stranded RNA binding motif AK38_4022 PF14622 Ribonuclease-III-like AK38_4023 PF10502 Signal peptidase, peptidase S26 AK38_4024 PF00679 Elongation factor G C-terminus AK38_4024 PF00009 Elongation factor Tu GTP binding domain AK38_4024 PF06421 GTP-binding protein LepA C-terminus AK38_4024 PF03144 Elongation factor Tu domain 2 AK38_4027 PF03888 MucB/RseB N-terminal domain AK38_4027 PF17188 MucB/RseB C-terminal domain AK38_4028 PF03872 Anti sigma-E protein RseA, N-terminal domain AK38_4028 PF03873 Anti sigma-E protein RseA, C-terminal domain AK38_4029 PF08281 Sigma-70, region 4 AK38_4029 PF04542 Sigma-70 region 2 AK38_403 PF03061 Thioesterase superfamily AK38_4030 PF00890 FAD binding domain AK38_4030 PF02910 Fumarate reductase flavoprotein C-term AK38_4031 PF05175 Methyltransferase small domain AK38_4032 PF00271 Helicase conserved C-terminal domain AK38_4032 PF00270 DEAD/DEAH box helicase AK38_4034 PF12796 Ankyrin repeats (3 copies) AK38_4037 PF01228 Glycine radical AK38_4038 PF03167 Uracil DNA glycosylase superfamily AK38_4039 PF01470 Pyroglutamyl peptidase AK38_404 PF00872 Transposase, Mutator family AK38_4042 PF03746 LamB/YcsF family AK38_4043 PF02626 Carboxyltransferase domain, subdomain A and B AK38_4044 PF02682 Carboxyltransferase domain, subdomain C and D AK38_4046 PF01784 NIF3 (NGG1p interacting factor 3) AK38_4047 PF02112 cAMP phosphodiesterases class-II AK38_4048 PF00875 DNA photolyase AK38_4048 PF03441 FAD binding domain of DNA photolyase AK38_4049 PF08349 Protein of unknown function (DUF1722) AK38_405 PF00872 Transposase, Mutator family AK38_4050 PF10725 Protein of unknown function (DUF2517) AK38_4051 PF03814 Potassium-transporting ATPase A subunit AK38_4053 PF02669 K+-transporting ATPase, c chain AK38_4054 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AK38_4054 PF13492 GAF domain AK38_4054 PF00512 His Kinase A (phospho-acceptor) domain AK38_4054 PF02702 Osmosensitive K+ channel His kinase sensor domain AK38_4054 PF13493 Domain of unknown function (DUF4118) AK38_4055 PF00072 Response regulator receiver domain AK38_4055 PF00486 Transcriptional regulatory protein, C terminal AK38_4059 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I AK38_4059 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain AK38_4059 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III AK38_4059 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II AK38_406 PF03544 Gram-negative bacterial TonB protein C-terminal AK38_4060 PF17206 SeqA protein N-terminal domain AK38_4060 PF03925 SeqA protein C-terminal domain AK38_4063 PF04794 YdjC-like protein AK38_4064 PF12833 Helix-turn-helix domain AK38_4064 PF07883 Cupin domain AK38_4065 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit AK38_4066 PF02378 Phosphotransferase system, EIIC AK38_4067 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit AK38_4068 PF02537 CrcB-like protein, Camphor Resistance (CrcB) AK38_4069 PF02537 CrcB-like protein, Camphor Resistance (CrcB) AK38_407 PF03795 YCII-related domain AK38_4070 PF07885 Ion channel AK38_4070 PF02254 TrkA-N domain AK38_4071 PF06411 HdeA/HdeB family AK38_4072 PF03824 High-affinity nickel-transport protein AK38_4073 PF03253 Urea transporter AK38_4074 PF01774 UreD urease accessory protein AK38_4075 PF02492 CobW/HypB/UreG, nucleotide-binding domain AK38_4076 PF01730 UreF AK38_4077 PF02814 UreE urease accessory protein, N-terminal domain AK38_4077 PF05194 UreE urease accessory protein, C-terminal domain AK38_4078 PF01979 Amidohydrolase family AK38_4078 PF00449 Urease alpha-subunit, N-terminal domain AK38_4079 PF00699 Urease beta subunit AK38_4080 PF00547 Urease, gamma subunit AK38_4082 PF00005 ABC transporter AK38_4083 PF00005 ABC transporter AK38_4084 PF12911 N-terminal TM domain of oligopeptide transport permease C AK38_4084 PF00528 Binding-protein-dependent transport system inner membrane component AK38_4085 PF00528 Binding-protein-dependent transport system inner membrane component AK38_4086 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AK38_4087 PF00313 'Cold-shock' DNA-binding domain AK38_4089 PF00872 Transposase, Mutator family AK38_4091 PF06711 Protein of unknown function (DUF1198) AK38_4092 PF09400 Protein of unknown function (DUF2002) AK38_4093 PF06392 Acid shock protein repeat AK38_4095 PF07972 NrdI Flavodoxin like AK38_4096 PF08343 Ribonucleotide reductase N-terminal AK38_4096 PF02867 Ribonucleotide reductase, barrel domain AK38_4096 PF00317 Ribonucleotide reductase, all-alpha domain AK38_4097 PF00268 Ribonucleotide reductase, small chain AK38_4098 PF00005 ABC transporter AK38_4098 PF00571 CBS domain AK38_4099 PF00528 Binding-protein-dependent transport system inner membrane component AK38_41 PF01515 Phosphate acetyl/butaryl transferase AK38_41 PF07085 DRTGG domain AK38_410 PF13505 Outer membrane protein beta-barrel domain AK38_4100 PF04069 Substrate binding domain of ABC-type glycine betaine transport system AK38_4105 PF01695 IstB-like ATP binding protein AK38_4106 PF01695 IstB-like ATP binding protein AK38_4107 PF13356 Arm DNA-binding domain AK38_4107 PF00589 Phage integrase family AK38_4108 PF01527 Transposase AK38_411 PF13396 Phospholipase_D-nuclease N-terminal AK38_411 PF13091 PLD-like domain AK38_4110 PF12697 Alpha/beta hydrolase family AK38_4112 PF01402 Ribbon-helix-helix protein, copG family AK38_4113 PF00258 Flavodoxin AK38_4114 PF01475 Ferric uptake regulator family AK38_4115 PF03174 Chitobiase/beta-hexosaminidase C-terminal domain AK38_4115 PF03173 Putative carbohydrate binding domain AK38_4115 PF00728 Glycosyl hydrolase family 20, catalytic domain AK38_4115 PF02838 Glycosyl hydrolase family 20, domain 2 AK38_4116 PF02838 Glycosyl hydrolase family 20, domain 2 AK38_4116 PF03173 Putative carbohydrate binding domain AK38_4116 PF03174 Chitobiase/beta-hexosaminidase C-terminal domain AK38_4116 PF00728 Glycosyl hydrolase family 20, catalytic domain AK38_4117 PF03573 outer membrane porin, OprD family AK38_4118 PF00749 tRNA synthetases class I (E and Q), catalytic domain AK38_4118 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain AK38_4119 PF01797 Transposase IS200 like AK38_412 PF04269 Protein of unknown function, DUF440 AK38_4120 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 AK38_4120 PF00367 phosphotransferase system, EIIB AK38_4120 PF02378 Phosphotransferase system, EIIC AK38_4121 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase AK38_4122 PF01979 Amidohydrolase family AK38_4123 PF00480 ROK family AK38_4123 PF01047 MarR family AK38_4124 PF13344 Haloacid dehalogenase-like hydrolase AK38_4125 PF00733 Asparagine synthase AK38_4125 PF13537 Glutamine amidotransferase domain AK38_4131 PF01494 FAD binding domain AK38_4132 PF04055 Radical SAM superfamily AK38_4132 PF01938 TRAM domain AK38_4132 PF00919 Uncharacterized protein family UPF0004 AK38_4133 PF02562 PhoH-like protein AK38_4134 PF02130 Uncharacterized protein family UPF0054 AK38_4135 PF00571 CBS domain AK38_4135 PF03471 Transporter associated domain AK38_4136 PF00795 Carbon-nitrogen hydrolase AK38_4137 PF00497 Bacterial extracellular solute-binding proteins, family 3 AK38_4138 PF00528 Binding-protein-dependent transport system inner membrane component AK38_4139 PF00528 Binding-protein-dependent transport system inner membrane component AK38_414 PF00005 ABC transporter AK38_414 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AK38_4140 PF00005 ABC transporter AK38_4141 PF07295 Zinc-ribbon containing domain AK38_4142 PF13603 Leucyl-tRNA synthetase, Domain 2 AK38_4142 PF00133 tRNA synthetases class I (I, L, M and V) AK38_4142 PF08264 Anticodon-binding domain of tRNA AK38_4143 PF04390 Lipopolysaccharide-assembly AK38_4144 PF06144 DNA polymerase III, delta subunit AK38_4144 PF14840 Processivity clamp loader gamma complex DNA pol III C-term AK38_4145 PF01467 Cytidylyltransferase-like AK38_415 PF00005 ABC transporter AK38_415 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AK38_4152 PF09255 Caf1 Capsule antigen AK38_4153 PF00577 Outer membrane usher protein AK38_4153 PF13954 PapC N-terminal domain AK38_4153 PF13953 PapC C-terminal domain AK38_4154 PF02753 Pili assembly chaperone PapD, C-terminal domain AK38_4154 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain AK38_4155 PF06445 GyrI-like small molecule binding domain AK38_4155 PF12833 Helix-turn-helix domain AK38_4156 PF00872 Transposase, Mutator family AK38_4157 PF01548 Transposase AK38_4157 PF02371 Transposase IS116/IS110/IS902 family AK38_4159 PF13091 PLD-like domain AK38_416 PF00528 Binding-protein-dependent transport system inner membrane component AK38_416 PF12911 N-terminal TM domain of oligopeptide transport permease C AK38_4161 PF04754 Putative transposase, YhgA-like AK38_4162 PF02796 Helix-turn-helix domain of resolvase AK38_4162 PF00239 Resolvase, N terminal domain AK38_4165 PF13614 AAA domain AK38_4165 PF18607 ParA helix turn helix domain AK38_4166 PF08775 ParB family AK38_4166 PF02195 ParB-like nuclease domain AK38_4169 PF01555 DNA methylase AK38_417 PF00528 Binding-protein-dependent transport system inner membrane component AK38_4171 PF07128 Protein of unknown function (DUF1380) AK38_4174 PF06006 Bacterial protein of unknown function (DUF905) AK38_4175 PF02195 ParB-like nuclease domain AK38_4176 PF02796 Helix-turn-helix domain of resolvase AK38_4176 PF00665 Integrase core domain AK38_4177 PF01695 IstB-like ATP binding protein AK38_4178 PF14579 Helix-hairpin-helix motif AK38_4178 PF17657 Bacterial DNA polymerase III alpha subunit finger domain AK38_4178 PF02811 PHP domain AK38_4178 PF07733 Bacterial DNA polymerase III alpha NTPase domain AK38_418 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AK38_4184 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain AK38_4184 PF01367 5'-3' exonuclease, C-terminal SAM fold AK38_4186 PF00154 recA bacterial DNA recombination protein AK38_419 PF01914 MarC family integral membrane protein AK38_4195 PF01051 Initiator Replication protein AK38_42 PF00871 Acetokinase family AK38_420 PF00465 Iron-containing alcohol dehydrogenase AK38_420 PF00171 Aldehyde dehydrogenase family AK38_4203 PF01797 Transposase IS200 like AK38_421 PF00665 Integrase core domain AK38_421 PF02796 Helix-turn-helix domain of resolvase AK38_4212 PF17191 RecG wedge domain AK38_4212 PF00270 DEAD/DEAH box helicase AK38_4212 PF00271 Helicase conserved C-terminal domain AK38_4213 PF02195 ParB-like nuclease domain AK38_4213 PF17762 HTH domain found in ParB protein AK38_4214 PF02195 ParB-like nuclease domain AK38_4214 PF17762 HTH domain found in ParB protein AK38_4215 PF00664 ABC transporter transmembrane region AK38_4215 PF03412 Peptidase C39 family AK38_4215 PF00005 ABC transporter AK38_422 PF00665 Integrase core domain AK38_422 PF02796 Helix-turn-helix domain of resolvase AK38_423 PF01695 IstB-like ATP binding protein AK38_4239 PF03335 Phage tail fibre repeat AK38_4239 PF03335 Phage tail fibre repeat AK38_4239 PF07484 Phage Tail Collar Domain AK38_4239 PF08400 Prophage tail fibre N-terminal AK38_4239 PF08400 Prophage tail fibre N-terminal AK38_4239 PF07484 Phage Tail Collar Domain AK38_424 PF00265 Thymidine kinase AK38_4241 PF02413 Caudovirales tail fibre assembly protein, lambda gpK AK38_4242 PF01695 IstB-like ATP binding protein AK38_4243 PF02796 Helix-turn-helix domain of resolvase AK38_4243 PF00665 Integrase core domain AK38_4244 PF02811 PHP domain AK38_4244 PF07733 Bacterial DNA polymerase III alpha NTPase domain AK38_4244 PF14579 Helix-hairpin-helix motif AK38_4244 PF17657 Bacterial DNA polymerase III alpha subunit finger domain AK38_4246 PF11775 Cobalamin biosynthesis protein CobT VWA domain AK38_4246 PF06213 Cobalamin biosynthesis protein CobT AK38_4249 PF03693 Bacterial antitoxin of ParD toxin-antitoxin type II system and RHH AK38_425 PF00816 H-NS histone family AK38_4251 PF03545 Yersinia virulence determinant (YopE) AK38_4251 PF09020 YopE, N terminal AK38_4252 PF05932 Tir chaperone protein (CesT) family AK38_4253 PF13276 HTH-like domain AK38_4253 PF13683 Integrase core domain AK38_4255 PF01695 IstB-like ATP binding protein AK38_4256 PF02796 Helix-turn-helix domain of resolvase AK38_4256 PF00665 Integrase core domain AK38_4258 PF01695 IstB-like ATP binding protein AK38_426 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain AK38_426 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain AK38_426 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain AK38_4260 PF13683 Integrase core domain AK38_4260 PF13276 HTH-like domain AK38_4261 PF01527 Transposase AK38_4264 PF02796 Helix-turn-helix domain of resolvase AK38_4264 PF00239 Resolvase, N terminal domain AK38_4266 PF13700 Domain of unknown function (DUF4158) AK38_4266 PF01526 Tn3 transposase DDE domain AK38_4267 PF05658 Head domain of trimeric autotransporter adhesin AK38_4267 PF03895 YadA-like membrane anchor domain AK38_4267 PF05662 Coiled stalk of trimeric autotransporter adhesin AK38_4269 PF05662 Coiled stalk of trimeric autotransporter adhesin AK38_4269 PF05658 Head domain of trimeric autotransporter adhesin AK38_4269 PF03895 YadA-like membrane anchor domain AK38_427 PF00072 Response regulator receiver domain AK38_4276 PF10723 Replication regulatory protein RepB AK38_4277 PF02387 IncFII RepA protein family AK38_428 PF02810 SEC-C motif AK38_4284 PF09632 Rac1-binding domain AK38_4284 PF00069 Protein kinase domain AK38_4286 PF13276 HTH-like domain AK38_4286 PF13683 Integrase core domain AK38_4287 PF00102 Protein-tyrosine phosphatase AK38_4287 PF09013 YopH, N-terminal AK38_4288 PF13683 Integrase core domain AK38_4288 PF13276 HTH-like domain AK38_429 PF00872 Transposase, Mutator family AK38_4290 PF01527 Transposase AK38_4291 PF09013 YopH, N-terminal AK38_4292 PF02108 Flagellar assembly protein FliH AK38_4293 PF06578 YOP proteins translocation protein K (YscK) AK38_4294 PF01514 Secretory protein of YscJ/FliF family AK38_4295 PF17001 Type III secretion basal body protein I, YscI, HrpB, PscI AK38_4296 PF09025 YopR, type III needle-polymerisation regulator AK38_4297 PF09477 Bacterial type II secretion system chaperone protein (type_III_yscG) AK38_4298 PF09392 Type III secretion needle MxiH, YscF, SsaG, EprI, PscF, EscF AK38_4299 PF08988 Type III secretion system, cytoplasmic E component of needle AK38_43 PF04217 Protein of unknown function, DUF412 AK38_430 PF00551 Formyl transferase AK38_430 PF01842 ACT domain AK38_4300 PF16693 Inner membrane component of T3SS, periplasmic domain AK38_4300 PF16697 Inner membrane component of T3SS, cytoplasmic domain AK38_4301 PF03958 Bacterial type II/III secretion system short domain AK38_4301 PF00263 Bacterial type II and III secretion system protein AK38_4302 PF05932 Tir chaperone protein (CesT) family AK38_4303 PF02311 AraC-like ligand binding domain AK38_4303 PF12833 Helix-turn-helix domain AK38_4304 PF09619 Type III secretion system lipoprotein chaperone (YscW) AK38_4305 PF01312 FlhB HrpN YscU SpaS Family AK38_4306 PF01311 Bacterial export proteins, family 1 AK38_4307 PF01313 Bacterial export proteins, family 3 AK38_4308 PF00813 FliP family AK38_4309 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term AK38_4310 PF02120 Flagellar hook-length control protein FliK AK38_4311 PF07321 Type III secretion protein YscO AK38_4312 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AK38_4312 PF18269 T3SS EscN ATPase C-terminal domain AK38_4312 PF02874 ATP synthase alpha/beta family, beta-barrel domain AK38_4313 PF07201 HrpJ-like domain AK38_4314 PF09059 TyeA AK38_4316 PF09474 Type III secretion system YscX (type_III_YscX) AK38_4318 PF00771 FHIPEP family AK38_4319 PF09621 Type III secretion system regulator (LcrR) AK38_4320 PF07216 LcrG protein AK38_4321 PF04792 V antigen (LcrV) protein AK38_4322 PF07720 Tetratricopeptide repeat AK38_4323 PF04888 Secretion system effector C (SseC) like family AK38_4324 PF05844 YopD protein AK38_4326 PF12468 Type III secretion system leucine rich repeat protein AK38_4329 PF05932 Tir chaperone protein (CesT) family AK38_433 PF03466 LysR substrate binding domain AK38_433 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AK38_4330 PF03543 Yersinia/Haemophilus virulence surface antigen AK38_4332 PF05818 Enterobacterial TraT complement resistance protein AK38_4334 PF13333 Integrase core domain AK38_4334 PF00665 Integrase core domain AK38_4334 PF13276 HTH-like domain AK38_4336 PF13614 AAA domain AK38_434 PF03372 Endonuclease/Exonuclease/phosphatase family AK38_435 PF00293 NUDIX domain AK38_436 PF07383 Protein of unknown function (DUF1496) AK38_437 PF01131 DNA topoisomerase AK38_437 PF01751 Toprim domain AK38_438 PF00586 AIR synthase related protein, N-terminal domain AK38_438 PF02769 AIR synthase related protein, C-terminal domain AK38_439 PF00881 Nitroreductase family AK38_44 PF03887 YfbU domain AK38_440 PF01343 Peptidase family S49 AK38_441 PF00710 Asparaginase, N-terminal AK38_441 PF17763 Glutaminase/Asparaginase C-terminal domain AK38_442 PF00857 Isochorismatase family AK38_443 PF07023 Protein of unknown function (DUF1315) AK38_444 PF01641 SelR domain AK38_445 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AK38_445 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain AK38_446 PF01263 Aldose 1-epimerase AK38_447 PF06629 MltA-interacting protein MipA AK38_448 PF08298 PrkA AAA domain AK38_448 PF06798 PrkA serine protein kinase C-terminal domain AK38_449 PF04285 Protein of unknown function (DUF444) AK38_45 PF13419 Haloacid dehalogenase-like hydrolase AK38_451 PF03466 LysR substrate binding domain AK38_451 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AK38_452 PF05726 Pirin C-terminal cupin domain AK38_452 PF02678 Pirin AK38_453 PF07690 Major Facilitator Superfamily AK38_454 PF01266 FAD dependent oxidoreductase AK38_455 PF04293 SpoVR like protein AK38_456 PF00392 Bacterial regulatory proteins, gntR family AK38_456 PF07840 FadR C-terminal domain AK38_457 PF06450 Bacterial Na+/H+ antiporter B (NhaB) AK38_458 PF02600 Disulfide bond formation protein DsbB AK38_46 PF03600 Citrate transporter AK38_46 PF02080 TrkA-C domain AK38_461 PF00266 Aminotransferase class-V AK38_463 PF00872 Transposase, Mutator family AK38_464 PF02413 Caudovirales tail fibre assembly protein, lambda gpK AK38_479 PF01797 Transposase IS200 like AK38_48 PF00155 Aminotransferase class I and II AK38_49 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AK38_49 PF03466 LysR substrate binding domain AK38_496 PF00872 Transposase, Mutator family AK38_5 PF07943 Penicillin-binding protein 5, C-terminal domain AK38_5 PF00768 D-alanyl-D-alanine carboxypeptidase AK38_50 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 AK38_509 PF06530 Phage antitermination protein Q AK38_51 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit AK38_511 PF05772 NinB protein AK38_514 PF01695 IstB-like ATP binding protein AK38_515 PF01695 IstB-like ATP binding protein AK38_52 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit AK38_52 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit AK38_520 PF12167 Arm DNA-binding domain AK38_520 PF00589 Phage integrase family AK38_521 PF03692 Putative zinc- or iron-chelating domain AK38_522 PF01557 Fumarylacetoacetate (FAA) hydrolase family AK38_523 PF13406 Transglycosylase SLT domain AK38_524 PF05166 YcgL domain AK38_525 PF05209 Septum formation inhibitor MinC, N-terminal domain AK38_525 PF03775 Septum formation inhibitor MinC, C-terminal domain AK38_526 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain AK38_527 PF03776 Septum formation topological specificity factor MinE AK38_528 PF00570 HRDC domain AK38_528 PF01612 3'-5' exonuclease AK38_529 PF00501 AMP-binding enzyme AK38_529 PF13193 AMP-binding enzyme C-terminal domain AK38_530 PF03843 Outer membrane lipoprotein Slp family AK38_531 PF00814 Glycoprotease family AK38_532 PF04851 Type III restriction enzyme, res subunit AK38_532 PF13307 Helicase C-terminal domain AK38_533 PF01042 Endoribonuclease L-PSP AK38_534 PF00893 Small Multidrug Resistance protein AK38_535 PF00893 Small Multidrug Resistance protein AK38_536 PF01081 KDPG and KHG aldolase AK38_538 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain AK38_538 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain AK38_539 PF01418 Helix-turn-helix domain, rpiR family AK38_539 PF01380 SIS domain AK38_54 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit AK38_54 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region AK38_54 PF10531 SLBB domain AK38_540 PF00224 Pyruvate kinase, barrel domain AK38_540 PF02887 Pyruvate kinase, alpha/beta domain AK38_541 PF03279 Bacterial lipid A biosynthesis acyltransferase AK38_542 PF01476 LysM domain AK38_542 PF01551 Peptidase family M23 AK38_542 PF08525 Opacity-associated protein A N-terminal motif AK38_543 PF01297 Zinc-uptake complex component A periplasmic AK38_544 PF00005 ABC transporter AK38_545 PF00950 ABC 3 transport family AK38_546 PF17864 RuvB AAA lid domain AK38_546 PF05491 RuvB C-terminal winged helix domain AK38_546 PF05496 Holliday junction DNA helicase RuvB P-loop domain AK38_547 PF07499 RuvA, C-terminal domain AK38_547 PF01330 RuvA N terminal domain AK38_548 PF02075 Crossover junction endodeoxyribonuclease RuvC AK38_549 PF01709 Transcriptional regulator AK38_55 PF04879 Molybdopterin oxidoreductase Fe4S4 domain AK38_55 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region AK38_55 PF01568 Molydopterin dinucleotide binding domain AK38_55 PF00384 Molybdopterin oxidoreductase AK38_550 PF00293 NUDIX domain AK38_551 PF02938 GAD domain AK38_551 PF00152 tRNA synthetases class II (D, K and N) AK38_551 PF01336 OB-fold nucleic acid binding domain AK38_552 PF01904 Protein of unknown function DUF72 AK38_553 PF01124 MAPEG family AK38_554 PF13649 Methyltransferase domain AK38_555 PF08003 Protein of unknown function (DUF1698) AK38_556 PF03932 CutC family AK38_557 PF06185 YecM protein AK38_558 PF00750 tRNA synthetases class I (R) AK38_558 PF05746 DALR anticodon binding domain AK38_558 PF03485 Arginyl tRNA synthetase N terminal domain AK38_559 PF05860 haemagglutination activity domain AK38_559 PF13332 Hemagglutinin repeat AK38_56 PF00146 NADH dehydrogenase AK38_560 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB AK38_560 PF08479 POTRA domain, ShlB-type AK38_560 PF17287 POTRA domain AK38_561 PF03023 Lipid II flippase MurJ AK38_562 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AK38_563 PF13302 Acetyltransferase (GNAT) domain AK38_564 PF07690 Major Facilitator Superfamily AK38_565 PF07273 Protein of unknown function (DUF1439) AK38_566 PF02613 Nitrate reductase delta subunit AK38_567 PF02811 PHP domain AK38_569 PF01325 Iron dependent repressor, N-terminal DNA binding domain AK38_569 PF00480 ROK family AK38_57 PF12838 4Fe-4S dicluster domain AK38_570 PF03009 Glycerophosphoryl diester phosphodiesterase family AK38_571 PF00005 ABC transporter AK38_571 PF08402 TOBE domain AK38_572 PF01797 Transposase IS200 like AK38_573 PF00005 ABC transporter AK38_573 PF08402 TOBE domain AK38_574 PF00528 Binding-protein-dependent transport system inner membrane component AK38_575 PF00528 Binding-protein-dependent transport system inner membrane component AK38_577 PF03009 Glycerophosphoryl diester phosphodiesterase family AK38_579 PF01740 STAS domain AK38_579 PF00916 Sulfate permease family AK38_58 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 AK38_580 PF00665 Integrase core domain AK38_580 PF02796 Helix-turn-helix domain of resolvase AK38_581 PF01695 IstB-like ATP binding protein AK38_582 PF00916 Sulfate permease family AK38_582 PF01740 STAS domain AK38_583 PF01797 Transposase IS200 like AK38_584 PF00793 DAHP synthetase I family AK38_585 PF13369 Transglutaminase-like superfamily AK38_586 PF04247 Invasion gene expression up-regulator, SirB AK38_587 PF13847 Methyltransferase domain AK38_587 PF17827 PrmC N-terminal domain AK38_588 PF03462 PCRF domain AK38_588 PF00472 RF-1 domain AK38_589 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain AK38_589 PF01488 Shikimate / quinate 5-dehydrogenase AK38_589 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain AK38_59 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L AK38_590 PF03550 Outer membrane lipoprotein LolB AK38_591 PF08544 GHMP kinases C terminal AK38_591 PF00288 GHMP kinases N terminal domain AK38_592 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase AK38_592 PF14572 Phosphoribosyl synthetase-associated domain AK38_593 PF10762 Protein of unknown function (DUF2583) AK38_594 PF01195 Peptidyl-tRNA hydrolase AK38_595 PF06071 Protein of unknown function (DUF933) AK38_595 PF01926 50S ribosome-binding GTPase AK38_6 PF04359 Protein of unknown function (DUF493) AK38_60 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus AK38_60 PF00361 Proton-conducting membrane transporter AK38_604 PF02129 X-Pro dipeptidyl-peptidase (S15 family) AK38_605 PF00072 Response regulator receiver domain AK38_605 PF00486 Transcriptional regulatory protein, C terminal AK38_606 PF00672 HAMP domain AK38_606 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AK38_606 PF00512 His Kinase A (phospho-acceptor) domain AK38_61 PF00361 Proton-conducting membrane transporter AK38_615 PF08242 Methyltransferase domain AK38_62 PF00361 Proton-conducting membrane transporter AK38_620 PF00872 Transposase, Mutator family AK38_629 PF01370 NAD dependent epimerase/dehydratase family AK38_630 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III AK38_630 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal AK38_631 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III AK38_631 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal AK38_633 PF05962 HutD AK38_634 PF01979 Amidohydrolase family AK38_635 PF07702 UTRA domain AK38_635 PF00392 Bacterial regulatory proteins, gntR family AK38_636 PF01979 Amidohydrolase family AK38_639 PF01695 IstB-like ATP binding protein AK38_64 PF04074 YhcH/YjgK/YiaL AK38_640 PF01695 IstB-like ATP binding protein AK38_641 PF00665 Integrase core domain AK38_641 PF02796 Helix-turn-helix domain of resolvase AK38_644 PF08402 TOBE domain AK38_644 PF00005 ABC transporter AK38_645 PF00528 Binding-protein-dependent transport system inner membrane component AK38_646 PF00528 Binding-protein-dependent transport system inner membrane component AK38_648 PF02894 Oxidoreductase family, C-terminal alpha/beta domain AK38_648 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AK38_649 PF00392 Bacterial regulatory proteins, gntR family AK38_649 PF07702 UTRA domain AK38_65 PF01202 Shikimate kinase AK38_655 PF00872 Transposase, Mutator family AK38_656 PF00872 Transposase, Mutator family AK38_66 PF00106 short chain dehydrogenase AK38_668 PF05638 Type VI secretion system effector, Hcp AK38_677 PF01066 CDP-alcohol phosphatidyltransferase AK38_678 PF08459 UvrC Helix-hairpin-helix N-terminal AK38_678 PF02151 UvrB/uvrC motif AK38_678 PF01541 GIY-YIG catalytic domain AK38_679 PF00072 Response regulator receiver domain AK38_679 PF00196 Bacterial regulatory proteins, luxR family AK38_68 PF00356 Bacterial regulatory proteins, lacI family AK38_680 PF10769 Protein of unknown function (DUF2594) AK38_681 PF06942 GlpM protein AK38_683 PF13505 Outer membrane protein beta-barrel domain AK38_685 PF00324 Amino acid permease AK38_686 PF01344 Kelch motif AK38_687 PF03358 NADPH-dependent FMN reductase AK38_688 PF04261 Dyp-type peroxidase family AK38_689 PF13473 Cupredoxin-like domain AK38_689 PF09375 Imelysin AK38_69 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AK38_69 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AK38_690 PF03239 Iron permease FTR1 family AK38_691 PF00474 Sodium:solute symporter family AK38_693 PF14850 DNA-binding domain of Proline dehydrogenase AK38_693 PF01619 Proline dehydrogenase AK38_693 PF18327 Proline utilization A proline dehydrogenase N-terminal domain AK38_693 PF00171 Aldehyde dehydrogenase family AK38_699 PF00291 Pyridoxal-phosphate dependent enzyme AK38_7 PF03099 Biotin/lipoate A/B protein ligase family AK38_70 PF07690 Major Facilitator Superfamily AK38_700 PF02899 Phage integrase, N-terminal SAM-like domain AK38_701 PF04545 Sigma-70, region 4 AK38_701 PF04542 Sigma-70 region 2 AK38_701 PF04539 Sigma-70 region 3 AK38_702 PF00669 Bacterial flagellin N-terminal helical region AK38_702 PF08884 Flagellin D3 domain AK38_702 PF00700 Bacterial flagellin C-terminal helical region AK38_703 PF07196 Flagellin hook IN motif AK38_703 PF07195 Flagellar hook-associated protein 2 C-terminus AK38_703 PF02465 Flagellar hook-associated protein 2 N-terminus AK38_704 PF02561 Flagellar protein FliS AK38_705 PF05400 Flagellar protein FliT AK38_706 PF12833 Helix-turn-helix domain AK38_707 PF00211 Adenylate and Guanylate cyclase catalytic domain AK38_707 PF00672 HAMP domain AK38_707 PF02743 Cache domain AK38_708 PF01966 HD domain AK38_709 PF00730 HhH-GPD superfamily base excision DNA repair protein AK38_71 PF03928 Haem-degrading AK38_712 PF02049 Flagellar hook-basal body complex protein FliE AK38_713 PF08345 Flagellar M-ring protein C-terminal AK38_713 PF01514 Secretory protein of YscJ/FliF family AK38_714 PF14842 FliG N-terminal domain AK38_714 PF01706 FliG C-terminal domain AK38_714 PF14841 FliG middle domain AK38_715 PF02108 Flagellar assembly protein FliH AK38_716 PF18269 T3SS EscN ATPase C-terminal domain AK38_716 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AK38_717 PF02050 Flagellar FliJ protein AK38_718 PF02120 Flagellar hook-length control protein FliK AK38_719 PF03748 Flagellar basal body-associated protein FliL AK38_72 PF00920 Dehydratase family AK38_720 PF02154 Flagellar motor switch protein FliM AK38_720 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term AK38_721 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term AK38_721 PF16973 Flagellar motor switch protein FliN N-terminal AK38_722 PF04347 Flagellar biosynthesis protein, FliO AK38_723 PF00813 FliP family AK38_724 PF01313 Bacterial export proteins, family 3 AK38_725 PF01311 Bacterial export proteins, family 1 AK38_728 PF00294 pfkB family carbohydrate kinase AK38_729 PF02653 Branched-chain amino acid transport system / permease component AK38_730 PF00005 ABC transporter AK38_731 PF13407 Periplasmic binding protein domain AK38_732 PF02653 Branched-chain amino acid transport system / permease component AK38_733 PF00596 Class II Aldolase and Adducin N-terminal domain AK38_734 PF04198 Putative sugar-binding domain AK38_735 PF00669 Bacterial flagellin N-terminal helical region AK38_736 PF00460 Flagella basal body rod protein AK38_736 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AK38_737 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase AK38_737 PF10135 Rod binding protein AK38_738 PF02119 Flagellar P-ring protein AK38_739 PF02107 Flagellar L-ring protein AK38_74 PF05957 Bacterial protein of unknown function (DUF883) AK38_740 PF00460 Flagella basal body rod protein AK38_740 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AK38_741 PF00460 Flagella basal body rod protein AK38_741 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AK38_742 PF07559 Flagellar basal body protein FlaE AK38_742 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AK38_742 PF00460 Flagella basal body rod protein AK38_743 PF13860 FlgD Ig-like domain AK38_743 PF03963 Flagellar hook capping protein - N-terminal region AK38_743 PF13861 FlgD Tudor-like domain AK38_744 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AK38_744 PF00460 Flagella basal body rod protein AK38_745 PF00460 Flagella basal body rod protein AK38_746 PF13144 Chaperone for flagella basal body P-ring formation AK38_746 PF17656 FlgA N-terminal domain AK38_747 PF04316 Anti-sigma-28 factor, FlgM AK38_748 PF05130 FlgN protein AK38_749 PF07979 Intimin C-type lectin domain AK38_749 PF11924 Inverse autotransporter, beta-domain AK38_749 PF09134 Invasin, domain 3 AK38_749 PF02369 Bacterial Ig-like domain (group 1) AK38_750 PF01797 Transposase IS200 like AK38_751 PF09134 Invasin, domain 3 AK38_751 PF07979 Intimin C-type lectin domain AK38_751 PF11924 Inverse autotransporter, beta-domain AK38_751 PF02369 Bacterial Ig-like domain (group 1) AK38_752 PF06366 Flagellar protein FlhE AK38_753 PF00771 FHIPEP family AK38_754 PF01312 FlhB HrpN YscU SpaS Family AK38_757 PF10709 Protein of unknown function (DUF2511) AK38_759 PF04234 CopC domain AK38_76 PF00425 chorismate binding enzyme AK38_760 PF00210 Ferritin-like domain AK38_761 PF06440 DNA polymerase III, theta subunit AK38_762 PF00561 alpha/beta hydrolase fold AK38_763 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain AK38_763 PF00326 Prolyl oligopeptidase family AK38_764 PF13995 YebF-like protein AK38_766 PF07130 YebG protein AK38_767 PF03880 DbpA RNA binding domain AK38_767 PF00271 Helicase conserved C-terminal domain AK38_767 PF00270 DEAD/DEAH box helicase AK38_768 PF02222 ATP-grasp domain AK38_769 PF03701 Uncharacterised protein family (UPF0181) AK38_77 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AK38_77 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AK38_77 PF16582 Middle domain of thiamine pyrophosphate AK38_770 PF04715 Anthranilate synthase component I, N terminal region AK38_770 PF00425 chorismate binding enzyme AK38_771 PF00293 NUDIX domain AK38_772 PF03315 Serine dehydratase beta chain AK38_772 PF03313 Serine dehydratase alpha chain AK38_773 PF01613 Flavin reductase like domain AK38_774 PF03241 4-hydroxyphenylacetate 3-hydroxylase C terminal AK38_774 PF11794 4-hydroxyphenylacetate 3-hydroxylase N terminal AK38_775 PF07690 Major Facilitator Superfamily AK38_776 PF03328 HpcH/HpaI aldolase/citrate lyase family AK38_777 PF01557 Fumarylacetoacetate (FAA) hydrolase family AK38_778 PF02962 5-carboxymethyl-2-hydroxymuconate isomerase AK38_779 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase AK38_78 PF12697 Alpha/beta hydrolase family AK38_780 PF00171 Aldehyde dehydrogenase family AK38_781 PF01557 Fumarylacetoacetate (FAA) hydrolase family AK38_782 PF01557 Fumarylacetoacetate (FAA) hydrolase family AK38_783 PF01047 MarR family AK38_784 PF03471 Transporter associated domain AK38_784 PF03741 Integral membrane protein TerC family AK38_785 PF03610 PTS system fructose IIA component AK38_785 PF03830 PTS system sorbose subfamily IIB component AK38_786 PF03609 PTS system sorbose-specific iic component AK38_787 PF03613 PTS system mannose/fructose/sorbose family IID component AK38_788 PF06173 Protein of unknown function (DUF986) AK38_789 PF02659 Putative manganese efflux pump AK38_79 PF00378 Enoyl-CoA hydratase/isomerase AK38_790 PF07715 TonB-dependent Receptor Plug Domain AK38_790 PF00593 TonB dependent receptor AK38_791 PF00990 Diguanylate cyclase, GGDEF domain AK38_791 PF00563 EAL domain AK38_791 PF08448 PAS fold AK38_791 PF08447 PAS fold AK38_791 PF05231 MASE1 AK38_791 PF13426 PAS domain AK38_792 PF01695 IstB-like ATP binding protein AK38_793 PF01695 IstB-like ATP binding protein AK38_794 PF02796 Helix-turn-helix domain of resolvase AK38_794 PF00665 Integrase core domain AK38_796 PF13847 Methyltransferase domain AK38_798 PF00313 'Cold-shock' DNA-binding domain AK38_8 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family AK38_8 PF04055 Radical SAM superfamily AK38_80 PF13378 Enolase C-terminal domain-like AK38_800 PF07017 Antimicrobial peptide resistance and lipid A acylation protein PagP AK38_801 PF00324 Amino acid permease AK38_804 PF13974 YebO-like protein AK38_805 PF13996 YobH-like protein AK38_806 PF10964 Protein of unknown function (DUF2766) AK38_808 PF12833 Helix-turn-helix domain AK38_81 PF13193 AMP-binding enzyme C-terminal domain AK38_81 PF00501 AMP-binding enzyme AK38_810 PF00005 ABC transporter AK38_810 PF00664 ABC transporter transmembrane region AK38_813 PF06167 Glucose-regulated metallo-peptidase M90 AK38_815 PF00356 Bacterial regulatory proteins, lacI family AK38_815 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family AK38_816 PF01695 IstB-like ATP binding protein AK38_82 PF02885 Glycosyl transferase family, helical bundle domain AK38_820 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family AK38_820 PF00356 Bacterial regulatory proteins, lacI family AK38_821 PF00872 Transposase, Mutator family AK38_822 PF07883 Cupin domain AK38_823 PF04962 KduI/IolB family AK38_825 PF06917 Periplasmic pectate lyase AK38_826 PF00528 Binding-protein-dependent transport system inner membrane component AK38_827 PF00528 Binding-protein-dependent transport system inner membrane component AK38_828 PF03459 TOBE domain AK38_828 PF00005 ABC transporter AK38_828 PF17912 MalK OB fold domain AK38_829 PF01547 Bacterial extracellular solute-binding protein AK38_83 PF07338 Protein of unknown function (DUF1471) AK38_830 PF06178 Oligogalacturonate-specific porin protein (KdgM) AK38_831 PF04307 LexA-binding, inner membrane-associated putative hydrolase AK38_833 PF01510 N-acetylmuramoyl-L-alanine amidase AK38_834 PF09339 IclR helix-turn-helix domain AK38_834 PF01614 Bacterial transcriptional regulator AK38_835 PF14583 Oligogalacturonate lyase AK38_836 PF07690 Major Facilitator Superfamily AK38_837 PF02753 Pili assembly chaperone PapD, C-terminal domain AK38_837 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain AK38_839 PF00577 Outer membrane usher protein AK38_839 PF13954 PapC N-terminal domain AK38_839 PF13953 PapC C-terminal domain AK38_84 PF05971 RNA methyltransferase AK38_840 PF02753 Pili assembly chaperone PapD, C-terminal domain AK38_840 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain AK38_841 PF00419 Fimbrial protein AK38_842 PF01435 Peptidase family M48 AK38_844 PF11818 C-terminal domain of tail specific protease (DUF3340) AK38_844 PF00595 PDZ domain AK38_844 PF03572 Peptidase family S41 AK38_844 PF17804 Tail specific protease N-terminal domain AK38_845 PF17516 ProQ C-terminal domain AK38_845 PF04352 ProQ/FINO family AK38_846 PF13185 GAF domain AK38_847 PF04403 Paraquat-inducible protein A AK38_848 PF02470 MlaD protein AK38_85 PF01695 IstB-like ATP binding protein AK38_852 PF02753 Pili assembly chaperone PapD, C-terminal domain AK38_852 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain AK38_855 PF07351 Protein of unknown function (DUF1480) AK38_857 PF00665 Integrase core domain AK38_857 PF02796 Helix-turn-helix domain of resolvase AK38_859 PF01695 IstB-like ATP binding protein AK38_86 PF02796 Helix-turn-helix domain of resolvase AK38_86 PF00665 Integrase core domain AK38_865 PF00842 Alanine racemase, C-terminal domain AK38_865 PF01168 Alanine racemase, N-terminal domain AK38_868 PF03895 YadA-like membrane anchor domain AK38_868 PF05658 Head domain of trimeric autotransporter adhesin AK38_868 PF05662 Coiled stalk of trimeric autotransporter adhesin AK38_868 PF13018 Extended Signal Peptide of Type V secretion system AK38_869 PF13018 Extended Signal Peptide of Type V secretion system AK38_869 PF05662 Coiled stalk of trimeric autotransporter adhesin AK38_869 PF05658 Head domain of trimeric autotransporter adhesin AK38_869 PF03895 YadA-like membrane anchor domain AK38_87 PF13426 PAS domain AK38_87 PF08447 PAS fold AK38_87 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AK38_870 PF01510 N-acetylmuramoyl-L-alanine amidase AK38_871 PF04344 Chemotaxis phosphatase, CheZ AK38_872 PF00072 Response regulator receiver domain AK38_873 PF00072 Response regulator receiver domain AK38_873 PF01339 CheB methylesterase AK38_874 PF03705 CheR methyltransferase, all-alpha domain AK38_874 PF01739 CheR methyltransferase, SAM binding domain AK38_877 PF02203 Tar ligand binding domain homologue AK38_877 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AK38_877 PF00672 HAMP domain AK38_88 PF00005 ABC transporter AK38_880 PF12951 Passenger-associated-transport-repeat AK38_881 PF13309 HTH domain AK38_881 PF08348 YheO-like PAS domain AK38_883 PF01042 Endoribonuclease L-PSP AK38_884 PF07690 Major Facilitator Superfamily AK38_885 PF01584 CheW-like domain AK38_886 PF09078 CheY binding AK38_886 PF02895 Signal transducing histidine kinase, homodimeric domain AK38_886 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AK38_886 PF01584 CheW-like domain AK38_886 PF01627 Hpt domain AK38_887 PF00691 OmpA family AK38_887 PF13677 Membrane MotB of proton-channel complex MotA/MotB AK38_888 PF01618 MotA/TolQ/ExbB proton channel family AK38_889 PF05280 Flagellar transcriptional activator (FlhC) AK38_89 PF00528 Binding-protein-dependent transport system inner membrane component AK38_890 PF05247 Flagellar transcriptional activator (FlhD) AK38_891 PF00689 Cation transporting ATPase, C-terminus AK38_891 PF00690 Cation transporter/ATPase, N-terminus AK38_892 PF02308 MgtC family AK38_893 PF00672 HAMP domain AK38_893 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AK38_893 PF02203 Tar ligand binding domain homologue AK38_894 PF02203 Tar ligand binding domain homologue AK38_894 PF00672 HAMP domain AK38_894 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AK38_895 PF10781 Dextransucrase DSRB AK38_896 PF00313 'Cold-shock' DNA-binding domain AK38_897 PF16353 Domain of unknown function(DUF4981) AK38_897 PF02837 Glycosyl hydrolases family 2, sugar binding domain AK38_897 PF02929 Beta galactosidase small chain AK38_897 PF02836 Glycosyl hydrolases family 2, TIM barrel domain AK38_897 PF00703 Glycosyl hydrolases family 2 AK38_898 PF14765 Polyketide synthase dehydratase AK38_898 PF08240 Alcohol dehydrogenase GroES-like domain AK38_898 PF00107 Zinc-binding dehydrogenase AK38_898 PF00550 Phosphopantetheine attachment site AK38_898 PF00109 Beta-ketoacyl synthase, N-terminal domain AK38_898 PF02801 Beta-ketoacyl synthase, C-terminal domain AK38_898 PF08659 KR domain AK38_898 PF16197 Ketoacyl-synthetase C-terminal extension AK38_898 PF00698 Acyl transferase domain AK38_899 PF10777 Inner membrane protein YlaC AK38_9 PF02416 mttA/Hcf106 family AK38_90 PF00497 Bacterial extracellular solute-binding proteins, family 3 AK38_900 PF13404 AsnC-type helix-turn-helix domain AK38_900 PF01037 Lrp/AsnC ligand binding domain AK38_902 PF14001 YdfZ protein AK38_903 PF00328 Histidine phosphatase superfamily (branch 2) AK38_905 PF01638 HxlR-like helix-turn-helix AK38_906 PF05368 NmrA-like family AK38_907 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AK38_907 PF08447 PAS fold AK38_909 PF00356 Bacterial regulatory proteins, lacI family AK38_909 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family AK38_910 PF00180 Isocitrate/isopropylmalate dehydrogenase AK38_911 PF00849 RNA pseudouridylate synthase AK38_912 PF00293 NUDIX domain AK38_914 PF04356 Protein of unknown function (DUF489) AK38_915 PF08328 Adenylosuccinate lyase C-terminal AK38_915 PF00206 Lyase AK38_917 PF00072 Response regulator receiver domain AK38_917 PF00486 Transcriptional regulatory protein, C terminal AK38_918 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AK38_918 PF08918 PhoQ Sensor AK38_919 PF08007 Cupin superfamily protein AK38_92 PF00210 Ferritin-like domain AK38_920 PF07687 Peptidase dimerisation domain AK38_920 PF01546 Peptidase family M20/M25/M40 AK38_921 PF02146 Sir2 family AK38_922 PF00480 ROK family AK38_923 PF12704 MacB-like periplasmic core domain AK38_923 PF02687 FtsX-like permease family AK38_924 PF00005 ABC transporter AK38_925 PF02687 FtsX-like permease family AK38_925 PF12704 MacB-like periplasmic core domain AK38_926 PF02559 CarD-like/TRCF domain AK38_926 PF03461 TRCF domain AK38_926 PF00270 DEAD/DEAH box helicase AK38_926 PF00271 Helicase conserved C-terminal domain AK38_926 PF17757 UvrB interaction domain AK38_927 PF05433 Glycine zipper 2TM domain AK38_928 PF02796 Helix-turn-helix domain of resolvase AK38_928 PF00665 Integrase core domain AK38_929 PF01695 IstB-like ATP binding protein AK38_93 PF13649 Methyltransferase domain AK38_930 PF00872 Transposase, Mutator family AK38_933 PF07992 Pyridine nucleotide-disulphide oxidoreductase AK38_934 PF05728 Uncharacterised protein family (UPF0227) AK38_935 PF00933 Glycosyl hydrolase family 3 N terminal domain AK38_936 PF01636 Phosphotransferase enzyme family AK38_937 PF08139 Prokaryotic membrane lipoprotein lipid attachment site AK38_937 PF13036 Peptidoglycan-synthase activator LpoB AK38_938 PF07233 Protein of unknown function (DUF1425) AK38_939 PF01230 HIT domain AK38_940 PF08501 Shikimate dehydrogenase substrate binding domain AK38_941 PF01797 Transposase IS200 like AK38_942 PF02378 Phosphotransferase system, EIIC AK38_942 PF00367 phosphotransferase system, EIIB AK38_943 PF01026 TatD related DNase AK38_944 PF09115 DNA polymerase III, delta subunit, C terminal AK38_945 PF02223 Thymidylate kinase AK38_946 PF02618 YceG-like family AK38_947 PF01063 Amino-transferase class IV AK38_948 PF01797 Transposase IS200 like AK38_949 PF00109 Beta-ketoacyl synthase, N-terminal domain AK38_949 PF02801 Beta-ketoacyl synthase, C-terminal domain AK38_95 PF00892 EamA-like transporter family AK38_950 PF00550 Phosphopantetheine attachment site AK38_952 PF00698 Acyl transferase domain AK38_953 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal AK38_953 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III AK38_954 PF02504 Fatty acid synthesis protein AK38_955 PF01783 Ribosomal L32p protein family AK38_956 PF02620 Large ribosomal RNA subunit accumulation protein YceD AK38_957 PF02545 Maf-like protein AK38_958 PF01797 Transposase IS200 like AK38_959 PF01479 S4 domain AK38_959 PF00849 RNA pseudouridylate synthase AK38_96 PF13505 Outer membrane protein beta-barrel domain AK38_960 PF00575 S1 RNA binding domain AK38_960 PF12111 Polyribonucleotide phosphorylase C terminal AK38_960 PF10150 Ribonuclease E/G family AK38_961 PF00872 Transposase, Mutator family AK38_962 PF03992 Antibiotic biosynthesis monooxygenase AK38_963 PF01979 Amidohydrolase family AK38_964 PF06183 DinI-like family AK38_965 PF00872 Transposase, Mutator family AK38_966 PF13991 BssS protein family AK38_967 PF01306 LacY proton/sugar symporter AK38_968 PF16874 Glycosyl hydrolase family 36 C-terminal domain AK38_968 PF16875 Glycosyl hydrolase family 36 N-terminal domain AK38_971 PF17837 4'-phosphopantetheinyl transferase N-terminal domain AK38_971 PF01648 4'-phosphopantetheinyl transferase superfamily AK38_972 PF03480 Bacterial extracellular solute-binding protein, family 7 AK38_974 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component AK38_975 PF00196 Bacterial regulatory proteins, luxR family AK38_975 PF00072 Response regulator receiver domain AK38_977 PF09831 Uncharacterized protein conserved in bacteria (DUF2058) AK38_979 PF01522 Polysaccharide deacetylase AK38_981 PF01554 MatE AK38_982 PF00764 Arginosuccinate synthase AK38_983 PF01070 FMN-dependent dehydrogenase AK38_985 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain AK38_985 PF13378 Enolase C-terminal domain-like AK38_986 PF01557 Fumarylacetoacetate (FAA) hydrolase family AK38_988 PF04134 Protein of unknown function, DUF393 AK38_989 PF07690 Major Facilitator Superfamily AK38_990 PF00872 Transposase, Mutator family AK38_991 PF09134 Invasin, domain 3 AK38_991 PF11924 Inverse autotransporter, beta-domain AK38_991 PF02369 Bacterial Ig-like domain (group 1) AK38_992 PF04363 Protein of unknown function (DUF496) AK38_994 PF08411 Exonuclease C-terminal AK38_994 PF00929 Exonuclease AK38_995 PF13520 Amino acid permease AK38_997 PF00465 Iron-containing alcohol dehydrogenase AK38_998 PF00005 ABC transporter AK38_999 PF00005 ABC transporter