locus-tag class description YPO0001 PF00258 Flavodoxin YPO0002 PF01037 Lrp/AsnC ligand binding domain YPO0003 PF03590 Aspartate-ammonia ligase YPO0004 PF05762 VWA domain containing CoxE-like protein YPO0005 PF17868 AAA lid domain YPO0005 PF12592 Protein of unknown function (DUF3763) YPO0005 PF07728 AAA domain (dynein-related subfamily) YPO0006 PF02705 K+ potassium transporter YPO0007 PF05025 RbsD / FucU transport protein family YPO0008 PF00294 pfkB family carbohydrate kinase YPO0009 PF07690 Major Facilitator Superfamily YPO0010 PF00392 Bacterial regulatory proteins, gntR family YPO0010 PF07729 FCD domain YPO0011 PF00872 Transposase, Mutator family YPO0012 PF03205 Molybdopterin guanine dinucleotide synthesis protein B YPO0013 PF12804 MobA-like NTP transferase domain YPO0013a PF06288 Protein of unknown function (DUF1040) YPO0014 PF01636 Phosphotransferase enzyme family YPO0015 PF01323 DSBA-like thioredoxin domain YPO0017 PF01367 5'-3' exonuclease, C-terminal SAM fold YPO0017 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain YPO0017 PF01612 3'-5' exonuclease YPO0017 PF00476 DNA polymerase family A YPO0018 PF01797 Transposase IS200 like YPO0019 PF01926 50S ribosome-binding GTPase YPO0020 PF04220 Der GTPase activator (YihI) YPO0021 PF04055 Radical SAM superfamily YPO0021 PF06969 HemN C-terminal domain YPO0022 PF02954 Bacterial regulatory protein, Fis family YPO0022 PF00072 Response regulator receiver domain YPO0022 PF00158 Sigma-54 interaction domain YPO0023 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPO0023 PF00512 His Kinase A (phospho-acceptor) domain YPO0023 PF00989 PAS fold YPO0024 PF03951 Glutamine synthetase, beta-Grasp domain YPO0024 PF00120 Glutamine synthetase, catalytic domain YPO0027 PF13419 Haloacid dehalogenase-like hydrolase YPO0028 PF03631 Virulence factor BrkB YPO0029 PF02580 D-Tyr-tRNA(Tyr) deacylase YPO0030 PF01695 IstB-like ATP binding protein YPO0031 PF02796 Helix-turn-helix domain of resolvase YPO0031 PF00665 Integrase core domain YPO0032 PF00583 Acetyltransferase (GNAT) family YPO0032 PF09500 Putative thioesterase (yiiD_Cterm) YPO0033 PF05170 AsmA family YPO0034 PF00860 Permease family YPO0035 PF03616 Sodium/glutamate symporter YPO0036 PF00270 DEAD/DEAH box helicase YPO0036 PF00271 Helicase conserved C-terminal domain YPO0036 PF17191 RecG wedge domain YPO0037 PF12105 SpoU, rRNA methylase, C-terminal YPO0037 PF00588 SpoU rRNA Methylase family YPO0038 PF13291 ACT domain YPO0038 PF04607 Region found in RelA / SpoT proteins YPO0038 PF02824 TGS domain YPO0039 PF01192 RNA polymerase Rpb6 YPO0040 PF00625 Guanylate kinase YPO0041 PF03120 NAD-dependent DNA ligase OB-fold domain YPO0041 PF01653 NAD-dependent DNA ligase adenylation domain YPO0042 PF03458 UPF0126 domain YPO0043 PF03755 YicC-like family, N-terminal region YPO0043 PF08340 Domain of unknown function (DUF1732) YPO0044 PF01138 3' exoribonuclease family, domain 1 YPO0044 PF03725 3' exoribonuclease family, domain 2 YPO0045 PF00156 Phosphoribosyl transferase domain YPO0046 PF00440 Bacterial regulatory proteins, tetR family YPO0047 PF00692 dUTPase YPO0048 PF04127 DNA / pantothenate metabolism flavoprotein YPO0048 PF02441 Flavoprotein YPO0049 PF04002 RadC-like JAB domain YPO0050 PF00830 Ribosomal L28 family YPO0051 PF00471 Ribosomal protein L33 YPO0052 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain YPO0052 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain YPO0052 PF06827 Zinc finger found in FPG and IleRS YPO0053 PF01467 Cytidylyltransferase-like YPO0054 PF00535 Glycosyl transferase family 2 YPO0055 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) YPO0056 PF01075 Glycosyltransferase family 9 (heptosyltransferase) YPO0057 PF01075 Glycosyltransferase family 9 (heptosyltransferase) YPO0058 PF01370 NAD dependent epimerase/dehydratase family YPO0059 PF00155 Aminotransferase class I and II YPO0060 PF08240 Alcohol dehydrogenase GroES-like domain YPO0060 PF00107 Zinc-binding dehydrogenase YPO0063 PF01551 Peptidase family M23 YPO0064 PF01676 Metalloenzyme superfamily YPO0064 PF06415 BPG-independent PGAM N-terminus (iPGM_N) YPO0065 PF00581 Rhodanese-like domain YPO0066 PF00462 Glutaredoxin YPO0067 PF02556 Preprotein translocase subunit SecB YPO0068 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus YPO0068 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus YPO0070 PF00132 Bacterial transferase hexapeptide (six repeats) YPO0070 PF06426 Serine acetyltransferase, N-terminal YPO0071 PF00588 SpoU rRNA Methylase family YPO0072 PF02805 Metal binding domain of Ada YPO0072 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain YPO0072 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain YPO0072 PF12833 Helix-turn-helix domain YPO0073 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPO0073 PF16527 Two-component sensor protein CpxA, periplasmic domain YPO0073 PF00672 HAMP domain YPO0073 PF00512 His Kinase A (phospho-acceptor) domain YPO0074 PF00486 Transcriptional regulatory protein, C terminal YPO0074 PF00072 Response regulator receiver domain YPO0075 PF07813 LTXXQ motif family protein YPO0076 PF04754 Putative transposase, YhgA-like YPO0077 PF16916 Dimerisation domain of Zinc Transporter YPO0077 PF01545 Cation efflux family YPO0078 PF00365 Phosphofructokinase YPO0081 PF00939 Sodium:sulfate symporter transmembrane region YPO0082 PF03737 Aldolase/RraA YPO0083 PF02585 GlcNAc-PI de-N-acetylase YPO0084 PF03466 LysR substrate binding domain YPO0084 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPO0085 PF00121 Triosephosphate isomerase YPO0086 PF07305 Protein of unknown function (DUF1454) YPO0087 PF05656 Protein of unknown function (DUF805) YPO0088 PF00970 Oxidoreductase FAD-binding domain YPO0088 PF00175 Oxidoreductase NAD-binding domain YPO0091 PF00230 Major intrinsic protein YPO0093 PF06005 Cell division protein ZapB YPO0094 PF01797 Transposase IS200 like YPO0096 PF01695 IstB-like ATP binding protein YPO0097 PF02796 Helix-turn-helix domain of resolvase YPO0097 PF00665 Integrase core domain YPO0098 PF03412 Peptidase C39 family YPO0098 PF00005 ABC transporter YPO0098 PF00664 ABC transporter transmembrane region YPO0099 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion YPO0099 PF00529 HlyD membrane-fusion protein of T1SS YPO0103 PF03737 Aldolase/RraA YPO0104 PF01040 UbiA prenyltransferase family YPO0105 PF07724 AAA domain (Cdc48 subfamily) YPO0105 PF10431 C-terminal, D2-small domain, of ClpB protein YPO0105 PF00004 ATPase family associated with various cellular activities (AAA) YPO0106 PF00227 Proteasome subunit YPO0107 PF05036 Sporulation related domain YPO0108 PF00356 Bacterial regulatory proteins, lacI family YPO0110 PF00270 DEAD/DEAH box helicase YPO0110 PF00271 Helicase conserved C-terminal domain YPO0110 PF17764 3′ DNA-binding domain (3′BD) YPO0110 PF18074 Primosomal protein N C-terminal domain YPO0110 PF18319 PriA DNA helicase Cys-rich region (CRR) domain YPO0111 PF01197 Ribosomal protein L31 YPO0112 PF05360 yiaA/B two helix domain YPO0114 PF01340 Met Apo-repressor, MetJ YPO0116 PF00742 Homoserine dehydrogenase YPO0116 PF00696 Amino acid kinase family YPO0116 PF03447 Homoserine dehydrogenase, NAD binding domain YPO0117 PF02219 Methylenetetrahydrofolate reductase YPO0118 PF13333 Integrase core domain YPO0118 PF00665 Integrase core domain YPO0118 PF13276 HTH-like domain YPO0120 PF00455 DeoR C terminal sensor domain YPO0120 PF08220 DeoR-like helix-turn-helix domain YPO0121 PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease YPO0121 PF01694 Rhomboid family YPO0122 PF00581 Rhodanese-like domain YPO0123 PF00196 Bacterial regulatory proteins, luxR family YPO0123 PF17874 MalT-like TPR region YPO0126 PF02446 4-alpha-glucanotransferase YPO0127 PF01106 NifU-like domain YPO0127 PF01521 Iron-sulphur cluster biosynthesis YPO0128 PF00156 Phosphoribosyl transferase domain YPO0129 PF00561 alpha/beta hydrolase fold YPO0130 PF07338 Protein of unknown function (DUF1471) YPO0131 PF09012 FeoC like transcriptional regulator YPO0132 PF07664 Ferrous iron transport protein B C terminus YPO0132 PF17910 FeoB cytosolic helical domain YPO0132 PF02421 Ferrous iron transport protein B YPO0132 PF07670 Nucleoside recognition YPO0133 PF04023 FeoA domain YPO0134 PF09371 Tex-like protein N-terminal domain YPO0134 PF16921 Tex protein YqgF-like domain YPO0134 PF17674 HHH domain YPO0134 PF00575 S1 RNA binding domain YPO0135 PF03449 Transcription elongation factor, N-terminal YPO0135 PF01272 Transcription elongation factor, GreA/GreB, C-term YPO0136 PF00486 Transcriptional regulatory protein, C terminal YPO0136 PF00072 Response regulator receiver domain YPO0137 PF00512 His Kinase A (phospho-acceptor) domain YPO0137 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPO0137 PF00672 HAMP domain YPO0138 PF01293 Phosphoenolpyruvate carboxykinase YPO0139 PF01430 Hsp33 protein YPO0140 PF01479 S4 domain YPO0141 PF13419 Haloacid dehalogenase-like hydrolase YPO0142 PF07095 Intracellular growth attenuator protein IgaA YPO0144 PF00293 NUDIX domain YPO0145 PF17092 Penicillin-binding protein OB-like domain YPO0145 PF00905 Penicillin binding protein transpeptidase domain YPO0145 PF00912 Transglycosylase YPO0150 PF00263 Bacterial type II and III secretion system protein YPO0150 PF03958 Bacterial type II/III secretion system short domain YPO0151 PF01202 Shikimate kinase YPO0152 PF01761 3-dehydroquinate synthase YPO0153 PF05036 Sporulation related domain YPO0154 PF02086 D12 class N6 adenine-specific DNA methyltransferase YPO0155 PF00834 Ribulose-phosphate 3 epimerase family YPO0156 PF13419 Haloacid dehalogenase-like hydrolase YPO0157 PF00579 tRNA synthetases class I (W and Y) YPO0158 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases YPO0158 PF14824 Sirohaem biosynthesis protein central YPO0158 PF10414 Sirohaem synthase dimerisation region YPO0159 PF01226 Formate/nitrite transporter YPO0160 PF13806 Rieske-like [2Fe-2S] domain YPO0161 PF18267 Rubredoxin NAD+ reductase C-terminal domain YPO0161 PF01077 Nitrite and sulphite reductase 4Fe-4S domain YPO0161 PF04324 BFD-like [2Fe-2S] binding domain YPO0161 PF07992 Pyridine nucleotide-disulphide oxidoreductase YPO0161 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain YPO0162 PF07969 Amidohydrolase family YPO0163 PF07690 Major Facilitator Superfamily YPO0165 PF00356 Bacterial regulatory proteins, lacI family YPO0166 PF11975 Family 4 glycosyl hydrolase C-terminal domain YPO0166 PF02056 Family 4 glycosyl hydrolase YPO0167 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD YPO0168 PF05872 Bacterial protein of unknown function (DUF853) YPO0169 PF00117 Glutamine amidotransferase class-I YPO0171 PF02796 Helix-turn-helix domain of resolvase YPO0171 PF00665 Integrase core domain YPO0172 PF01695 IstB-like ATP binding protein YPO0174 PF12805 FUSC-like inner membrane protein yccS YPO0175 PF00027 Cyclic nucleotide-binding domain YPO0175 PF13545 Crp-like helix-turn-helix domain YPO0176 PF02566 OsmC-like protein YPO0178 PF00485 Phosphoribulokinase / Uridine kinase family YPO0179 PF06794 Uncharacterised protein family (UPF0270) YPO0180 PF00561 alpha/beta hydrolase fold YPO0181 PF01810 LysE type translocator YPO0182 PF04069 Substrate binding domain of ABC-type glycine betaine transport system YPO0183 PF00005 ABC transporter YPO0184 PF00528 Binding-protein-dependent transport system inner membrane component YPO0185 PF02668 Taurine catabolism dioxygenase TauD, TfdA family YPO0187 PF00535 Glycosyl transferase family 2 YPO0190 PF02525 Flavodoxin-like fold YPO0191 PF00999 Sodium/hydrogen exchanger family YPO0191 PF02254 TrkA-N domain YPO0192 PF09526 Probable metal-binding protein (DUF2387) YPO0193 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase YPO0194 PF04102 SlyX YPO0195 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase YPO0195 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase YPO0196 PF13309 HTH domain YPO0196 PF08348 YheO-like PAS domain YPO0197 PF02635 DsrE/DsrF-like family YPO0198 PF02635 DsrE/DsrF-like family YPO0199 PF04077 DsrH like protein YPO0200 PF00164 Ribosomal protein S12/S23 YPO0201 PF00177 Ribosomal protein S7p/S5e YPO0202 PF03144 Elongation factor Tu domain 2 YPO0202 PF03764 Elongation factor G, domain IV YPO0202 PF00009 Elongation factor Tu GTP binding domain YPO0202 PF00679 Elongation factor G C-terminus YPO0202 PF14492 Elongation Factor G, domain II YPO0203 PF03143 Elongation factor Tu C-terminal domain YPO0203 PF03144 Elongation factor Tu domain 2 YPO0203 PF00009 Elongation factor Tu GTP binding domain YPO0204 PF01797 Transposase IS200 like YPO0205 PF04324 BFD-like [2Fe-2S] binding domain YPO0206 PF00210 Ferritin-like domain YPO0209 PF00338 Ribosomal protein S10p/S20e YPO0210 PF00297 Ribosomal protein L3 YPO0211 PF00573 Ribosomal protein L4/L1 family YPO0212 PF00276 Ribosomal protein L23 YPO0213 PF00181 Ribosomal Proteins L2, RNA binding domain YPO0213 PF03947 Ribosomal Proteins L2, C-terminal domain YPO0214 PF00203 Ribosomal protein S19 YPO0215 PF00237 Ribosomal protein L22p/L17e YPO0216 PF07650 KH domain YPO0216 PF00189 Ribosomal protein S3, C-terminal domain YPO0217 PF00252 Ribosomal protein L16p/L10e YPO0218 PF00831 Ribosomal L29 protein YPO0219 PF00366 Ribosomal protein S17 YPO0220 PF00238 Ribosomal protein L14p/L23e YPO0221 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 YPO0221 PF00467 KOW motif YPO0222 PF00673 ribosomal L5P family C-terminus YPO0222 PF00281 Ribosomal protein L5 YPO0222a PF00253 Ribosomal protein S14p/S29e YPO0223 PF00410 Ribosomal protein S8 YPO0224 PF00347 Ribosomal protein L6 YPO0225 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast YPO0226 PF03719 Ribosomal protein S5, C-terminal domain YPO0226 PF00333 Ribosomal protein S5, N-terminal domain YPO0227 PF00327 Ribosomal protein L30p/L7e YPO0228 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A YPO0229 PF00344 SecY translocase YPO0230 PF00444 Ribosomal protein L36 YPO0231 PF00416 Ribosomal protein S13/S18 YPO0232 PF00411 Ribosomal protein S11 YPO0233 PF01479 S4 domain YPO0233 PF00163 Ribosomal protein S4/S9 N-terminal domain YPO0234 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain YPO0234 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain YPO0234 PF01000 RNA polymerase Rpb3/RpoA insert domain YPO0235 PF01196 Ribosomal protein L17 YPO0236 PF13411 MerR HTH family regulatory protein YPO0237 PF03889 Alternative ribosome-rescue factor A YPO0238 PF01741 Large-conductance mechanosensitive channel, MscL YPO0239 PF02080 TrkA-C domain YPO0239 PF02254 TrkA-N domain YPO0240 PF01189 16S rRNA methyltransferase RsmB/F YPO0240 PF01029 NusB family YPO0241 PF00551 Formyl transferase YPO0241 PF02911 Formyl transferase, C-terminal domain YPO0242 PF01327 Polypeptide deformylase YPO0243 PF02481 DNA recombination-mediator protein A YPO0243 PF17782 DprA winged helix domain YPO0244 PF04361 Protein of unknown function (DUF494) YPO0245 PF01396 Topoisomerase DNA binding C4 zinc finger YPO0245a PF01300 Telomere recombination YPO0246 PF01488 Shikimate / quinate 5-dehydrogenase YPO0246 PF08501 Shikimate dehydrogenase substrate binding domain YPO0246 PF18317 Shikimate 5'-dehydrogenase C-terminal domain YPO0248 PF01695 IstB-like ATP binding protein YPO0249 PF00665 Integrase core domain YPO0249 PF02796 Helix-turn-helix domain of resolvase YPO0251 PF00474 Sodium:solute symporter family YPO0252 PF04341 Protein of unknown function, DUF485 YPO0253 PF16177 Acetyl-coenzyme A synthetase N-terminus YPO0253 PF00501 AMP-binding enzyme YPO0253 PF13193 AMP-binding enzyme C-terminal domain YPO0254 PF00375 Sodium:dicarboxylate symporter family YPO0255 PF00072 Response regulator receiver domain YPO0255 PF00196 Bacterial regulatory proteins, luxR family YPO0256 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) YPO0256 PF00072 Response regulator receiver domain YPO0256 PF01627 Hpt domain YPO0256 PF00512 His Kinase A (phospho-acceptor) domain YPO0256 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPO0256 PF00672 HAMP domain YPO0260 PF12833 Helix-turn-helix domain YPO0260 PF14525 AraC-binding-like domain YPO0263 PF01514 Secretory protein of YscJ/FliF family YPO0266 PF00771 FHIPEP family YPO0267 PF18269 T3SS EscN ATPase C-terminal domain YPO0267 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain YPO0269 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term YPO0270 PF00813 FliP family YPO0271 PF01313 Bacterial export proteins, family 3 YPO0272 PF01311 Bacterial export proteins, family 1 YPO0273 PF01312 FlhB HrpN YscU SpaS Family YPO0274 PF04143 Sulphur transport YPO0275 PF01206 Sulfurtransferase TusA YPO0276 PF03466 LysR substrate binding domain YPO0276 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPO0277 PF03222 Tryptophan/tyrosine permease family YPO0278 PF01053 Cys/Met metabolism PLP-dependent enzyme YPO0279 PF00005 ABC transporter YPO0280 PF01032 FecCD transport family YPO0281 PF01497 Periplasmic binding protein YPO0282 PF05171 Haemin-degrading HemS.ChuX domain YPO0283 PF07715 TonB-dependent Receptor Plug Domain YPO0283 PF00593 TonB dependent receptor YPO0284 PF13460 NAD(P)H-binding YPO0285 PF06228 Haem utilisation ChuX/HutX YPO0286 PF04055 Radical SAM superfamily YPO0290 PF15608 PELOTA RNA binding domain YPO0290 PF11202 Phosphoribosyl transferase (PRTase) YPO0294 PF02342 TerD domain YPO0295 PF02342 TerD domain YPO0296 PF05099 Tellurite resistance protein TerB YPO0297 PF03741 Integral membrane protein TerC family YPO0298 PF02342 TerD domain YPO0299 PF02342 TerD domain YPO0300 PF01797 Transposase IS200 like YPO0302 PF13953 PapC C-terminal domain YPO0302 PF13954 PapC N-terminal domain YPO0302 PF00577 Outer membrane usher protein YPO0303 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain YPO0308 PF01565 FAD binding domain YPO0308 PF08031 Berberine and berberine like YPO0309 PF12951 Passenger-associated-transport-repeat YPO0310 PF04345 Chorismate lyase YPO0311 PF01040 UbiA prenyltransferase family YPO0312 PF01553 Acyltransferase YPO0313 PF01219 Prokaryotic diacylglycerol kinase YPO0314 PF01726 LexA DNA binding domain YPO0314 PF00717 Peptidase S24-like YPO0315 PF01475 Ferric uptake regulator family YPO0316 PF01207 Dihydrouridine synthase (Dus) YPO0318 PF09583 Phage shock protein G (Phageshock_PspG) YPO0319 PF08240 Alcohol dehydrogenase GroES-like domain YPO0319 PF00107 Zinc-binding dehydrogenase YPO0320 PF03796 DnaB-like helicase C terminal domain YPO0320 PF00772 DnaB-like helicase N terminal domain YPO0321 PF00842 Alanine racemase, C-terminal domain YPO0321 PF01168 Alanine racemase, N-terminal domain YPO0322 PF00155 Aminotransferase class I and II YPO0323 PF04237 YjbR YPO0324 PF17755 UvrA DNA-binding domain YPO0324 PF17760 UvrA interaction domain YPO0324 PF00005 ABC transporter YPO0325 PF00436 Single-strand binding protein family YPO0326 PF05336 L-rhamnose mutarotase YPO0327 PF00465 Iron-containing alcohol dehydrogenase YPO0328 PF00596 Class II Aldolase and Adducin N-terminal domain YPO0329 PF06134 L-rhamnose isomerase (RhaA) YPO0330 PF02782 FGGY family of carbohydrate kinases, C-terminal domain YPO0330 PF00370 FGGY family of carbohydrate kinases, N-terminal domain YPO0332 PF12833 Helix-turn-helix domain YPO0332 PF02311 AraC-like ligand binding domain YPO0333 PF02311 AraC-like ligand binding domain YPO0333 PF12833 Helix-turn-helix domain YPO0334 PF06379 L-rhamnose-proton symport protein (RhaT) YPO0336 PF03400 IS1 transposase YPO0342 PF13247 4Fe-4S dicluster domain YPO0342 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster YPO0342 PF07992 Pyridine nucleotide-disulphide oxidoreductase YPO0343 PF12800 4Fe-4S binding domain YPO0343 PF13247 4Fe-4S dicluster domain YPO0344 PF00384 Molybdopterin oxidoreductase YPO0344 PF04879 Molybdopterin oxidoreductase Fe4S4 domain YPO0344 PF01568 Molydopterin dinucleotide binding domain YPO0345 PF11412 Disulphide bond corrector protein DsbC YPO0345 PF02683 Cytochrome C biogenesis protein transmembrane region YPO0346 PF03091 CutA1 divalent ion tolerance protein YPO0347 PF03605 Anaerobic c4-dicarboxylate membrane transporter YPO0348 PF00206 Lyase YPO0348 PF10415 Fumarase C C-terminus YPO0349 PF04186 FxsA cytoplasmic membrane protein YPO0350 PF00166 Chaperonin 10 Kd subunit YPO0351 PF00118 TCP-1/cpn60 chaperonin family YPO0352 PF13698 Domain of unknown function (DUF4156) YPO0353 PF04055 Radical SAM superfamily YPO0354 PF08207 Elongation factor P (EF-P) KOW-like domain YPO0354 PF01132 Elongation factor P (EF-P) OB domain YPO0354 PF09285 Elongation factor P, C-terminal YPO0355 PF00893 Small Multidrug Resistance protein YPO0356 PF01797 Transposase IS200 like YPO0357 PF02313 Fumarate reductase subunit D YPO0358 PF02300 Fumarate reductase subunit C YPO0359 PF13085 2Fe-2S iron-sulfur cluster binding domain YPO0359 PF13183 4Fe-4S dicluster domain YPO0360 PF02910 Fumarate reductase flavoprotein C-term YPO0360 PF00890 FAD binding domain YPO0362 PF00152 tRNA synthetases class II (D, K and N) YPO0363 PF12794 Mechanosensitive ion channel inner membrane domain 1 YPO0363 PF00924 Mechanosensitive ion channel YPO0363 PF12795 Mechanosensitive ion channel porin domain YPO0364 PF02666 Phosphatidylserine decarboxylase YPO0365 PF03193 RsgA GTPase YPO0366 PF00929 Exonuclease YPO0367 PF08331 Domain of unknown function (DUF1730) YPO0368 PF01256 Carbohydrate kinase YPO0368 PF03853 YjeF-related protein N-terminus YPO0369 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE YPO0370 PF01520 N-acetylmuramoyl-L-alanine amidase YPO0371 PF01119 DNA mismatch repair protein, C-terminal domain YPO0371 PF08676 MutL C terminal dimerisation domain YPO0373 PF17209 Hfq protein YPO0374 PF01926 50S ribosome-binding GTPase YPO0374 PF13167 GTP-binding GTPase N-terminal YPO0374 PF16360 GTP-binding GTPase Middle Region YPO0375 PF12221 Bacterial membrane protein N terminal YPO0375 PF01145 SPFH domain / Band 7 family YPO0376 PF01145 SPFH domain / Band 7 family YPO0377 PF09838 Uncharacterized protein conserved in bacteria (DUF2065) YPO0378 PF00709 Adenylosuccinate synthetase YPO0379 PF02082 Transcriptional regulator YPO0380 PF08461 Ribonuclease R winged-helix domain YPO0380 PF17876 Cold shock domain YPO0380 PF00575 S1 RNA binding domain YPO0380 PF08206 Ribonuclease B OB domain YPO0380 PF00773 RNB domain YPO0381 PF08032 RNA 2'-O ribose methyltransferase substrate binding YPO0381 PF00588 SpoU rRNA Methylase family YPO0383 PF18158 Adaptive response protein AidB N-terminal domain YPO0383 PF02770 Acyl-CoA dehydrogenase, middle domain YPO0383 PF00441 Acyl-CoA dehydrogenase, C-terminal domain YPO0384 PF07338 Protein of unknown function (DUF1471) YPO0385 PF01695 IstB-like ATP binding protein YPO0386 PF02796 Helix-turn-helix domain of resolvase YPO0386 PF00665 Integrase core domain YPO0387 PF07728 AAA domain (dynein-related subfamily) YPO0387 PF12102 Domain of unknown function (DUF3578) YPO0391 PF01555 DNA methylase YPO0395 PF00665 Integrase core domain YPO0396 PF00665 Integrase core domain YPO0399 PF05987 Bacterial protein of unknown function (DUF898) YPO0401 PF12833 Helix-turn-helix domain YPO0402 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit YPO0403 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit YPO0405 PF00391 PEP-utilising enzyme, mobile domain YPO0405 PF00381 PTS HPr component phosphorylation site YPO0405 PF05524 PEP-utilising enzyme, N-terminal YPO0405 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 YPO0405 PF02896 PEP-utilising enzyme, TIM barrel domain YPO0406 PF10696 Protein of unknown function (DUF2501) YPO0407 PF03992 Antibiotic biosynthesis monooxygenase YPO0408 PF01791 DeoC/LacD family aldolase YPO0409 PF13407 Periplasmic binding protein domain YPO0410 PF02653 Branched-chain amino acid transport system / permease component YPO0411 PF02653 Branched-chain amino acid transport system / permease component YPO0412 PF00005 ABC transporter YPO0415 PF02782 FGGY family of carbohydrate kinases, C-terminal domain YPO0415 PF00370 FGGY family of carbohydrate kinases, N-terminal domain YPO0416 PF01075 Glycosyltransferase family 9 (heptosyltransferase) YPO0420 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion YPO0421 PF00873 AcrB/AcrD/AcrF family YPO0424 PF01095 Pectinesterase YPO0425 PF00990 Diguanylate cyclase, GGDEF domain YPO0426 PF07256 Protein of unknown function (DUF1435) YPO0427 PF08468 Methyltransferase small domain N-terminal YPO0427 PF05175 Methyltransferase small domain YPO0428 PF03603 DNA polymerase III psi subunit YPO0429 PF00583 Acetyltransferase (GNAT) family YPO0430 PF16658 Class II release factor RF3, C-terminal domain YPO0430 PF03144 Elongation factor Tu domain 2 YPO0430 PF00009 Elongation factor Tu GTP binding domain YPO0431 PF04972 BON domain YPO0432 PF07043 Protein of unknown function (DUF1328) YPO0433 PF01734 Patatin-like phospholipase YPO0434 PF01026 TatD related DNase YPO0435 PF07670 Nucleoside recognition YPO0435 PF01773 Na+ dependent nucleoside transporter N-terminus YPO0435 PF07662 Na+ dependent nucleoside transporter C-terminus YPO0436 PF01791 DeoC/LacD family aldolase YPO0439 PF01676 Metalloenzyme superfamily YPO0440 PF01048 Phosphorylase superfamily YPO0441 PF10144 Bacterial virulence factor haemolysin YPO0442 PF18429 Domain of unknown function (DUF5609) YPO0443 PF18073 Rubredoxin metal binding domain YPO0444 PF13521 AAA domain YPO0444 PF01381 Helix-turn-helix YPO0448 PF00691 OmpA family YPO0449 PF00990 Diguanylate cyclase, GGDEF domain YPO0449 PF17152 Periplasmic sensor domain YPO0451 PF00690 Cation transporter/ATPase, N-terminus YPO0451 PF00689 Cation transporting ATPase, C-terminus YPO0452 PF01464 Transglycosylase SLT domain YPO0452 PF14718 Soluble lytic murein transglycosylase L domain YPO0453 PF01371 Trp repressor protein YPO0454 PF01931 Protein of unknown function DUF84 YPO0455 PF00300 Histidine phosphatase superfamily (branch 1) YPO0456 PF06445 GyrI-like small molecule binding domain YPO0456 PF12833 Helix-turn-helix domain YPO0457 PF05981 CreA protein YPO0458 PF00072 Response regulator receiver domain YPO0458 PF00486 Transcriptional regulatory protein, C terminal YPO0459 PF03447 Homoserine dehydrogenase, NAD binding domain YPO0459 PF00696 Amino acid kinase family YPO0459 PF00742 Homoserine dehydrogenase YPO0459 PF13840 ACT domain YPO0459 PF01842 ACT domain YPO0460 PF08544 GHMP kinases C terminal YPO0460 PF00288 GHMP kinases N terminal domain YPO0461 PF00291 Pyridoxal-phosphate dependent enzyme YPO0461 PF14821 Threonine synthase N terminus YPO0462 PF03883 Peroxide stress protein YaaA YPO0463 PF00923 Transaldolase/Fructose-6-phosphate aldolase YPO0464 PF00994 Probable molybdopterin binding domain YPO0465 PF07690 Major Facilitator Superfamily YPO0467 PF01184 GPR1/FUN34/yaaH family YPO0468 PF00012 Hsp70 protein YPO0469 PF00226 DnaJ domain YPO0469 PF00684 DnaJ central domain YPO0469 PF01556 DnaJ C terminal domain YPO0470 PF06965 Na+/H+ antiporter 1 YPO0471 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPO0471 PF03466 LysR substrate binding domain YPO0472 PF01649 Ribosomal protein S20 YPO0474 PF06574 FAD synthetase YPO0474 PF01687 Riboflavin kinase YPO0475 PF00133 tRNA synthetases class I (I, L, M and V) YPO0475 PF06827 Zinc finger found in FPG and IleRS YPO0475 PF08264 Anticodon-binding domain of tRNA YPO0476 PF01252 Signal peptidase (SPase) II YPO0476a PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase YPO0477 PF02401 LytB protein YPO0479 PF01797 Transposase IS200 like YPO0480 PF05173 Dihydrodipicolinate reductase, C-terminus YPO0480 PF01113 Dihydrodipicolinate reductase, N-terminus YPO0481 PF00117 Glutamine amidotransferase class-I YPO0481 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain YPO0482 PF02142 MGS-like domain YPO0482 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain YPO0482 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain YPO0483 PF01810 LysE type translocator YPO0484 PF06738 Putative threonine/serine exporter YPO0485 PF12821 Threonine/Serine exporter, ThrE YPO0486 PF00186 Dihydrofolate reductase YPO0487 PF01797 Transposase IS200 like YPO0490 PF00149 Calcineurin-like phosphoesterase YPO0491 PF04379 ApaG domain YPO0492 PF00398 Ribosomal RNA adenine dimethylase YPO0493 PF04166 Pyridoxal phosphate biosynthetic protein PdxA YPO0494 PF09312 SurA N-terminal domain YPO0494 PF00639 PPIC-type PPIASE domain YPO0495 PF03968 OstA-like protein YPO0495 PF04453 LPS transport system D YPO0496 PF00226 DnaJ domain YPO0496 PF05099 Tellurite resistance protein TerB YPO0497 PF00849 RNA pseudouridylate synthase YPO0506 PF07724 AAA domain (Cdc48 subfamily) YPO0506 PF17871 AAA lid domain YPO0506 PF00004 ATPase family associated with various cellular activities (AAA) YPO0506 PF10431 C-terminal, D2-small domain, of ClpB protein YPO0507 PF04717 Type VI secretion system, phage-baseplate injector YPO0514 PF00691 OmpA family YPO0514 PF05736 OprF membrane domain YPO0517 PF18337 RapA N-terminal Tudor like domain YPO0517 PF18339 RapA N-terminal Tudor like domain 1 YPO0517 PF00176 SNF2 family N-terminal domain YPO0517 PF12137 RNA polymerase recycling family C-terminal YPO0517 PF00271 Helicase conserved C-terminal domain YPO0518 PF00136 DNA polymerase family B YPO0518 PF03104 DNA polymerase family B, exonuclease domain YPO0519 PF09335 SNARE associated Golgi protein YPO0520 PF00005 ABC transporter YPO0521 PF00528 Binding-protein-dependent transport system inner membrane component YPO0524 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle YPO0524 PF12793 Sugar transport-related sRNA regulator N-term YPO0527 PF01695 IstB-like ATP binding protein YPO0528 PF00665 Integrase core domain YPO0528 PF02796 Helix-turn-helix domain of resolvase YPO0530 PF00694 Aconitase C-terminal domain YPO0531 PF00330 Aconitase family (aconitate hydratase) YPO0532 PF00180 Isocitrate/isopropylmalate dehydrogenase YPO0533 PF08502 LeuA allosteric (dimerisation) domain YPO0533 PF00682 HMGL-like YPO0534 PF01797 Transposase IS200 like YPO0535 PF03466 LysR substrate binding domain YPO0535 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPO0537 PF00501 AMP-binding enzyme YPO0539 PF00205 Thiamine pyrophosphate enzyme, central domain YPO0539 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain YPO0539 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain YPO0540 PF10369 Small subunit of acetolactate synthase YPO0541 PF01797 Transposase IS200 like YPO0543 PF00356 Bacterial regulatory proteins, lacI family YPO0543 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family YPO0544 PF06610 L-alanine exporter YPO0546 PF02381 MraZ protein, putative antitoxin-like YPO0547 PF01795 MraW methylase family YPO0548 PF04999 Cell division protein FtsL YPO0549 PF00905 Penicillin binding protein transpeptidase domain YPO0549 PF03717 Penicillin-binding Protein dimerisation domain YPO0550 PF08245 Mur ligase middle domain YPO0550 PF02875 Mur ligase family, glutamate ligase domain YPO0550 PF01225 Mur ligase family, catalytic domain YPO0551 PF02875 Mur ligase family, glutamate ligase domain YPO0551 PF01225 Mur ligase family, catalytic domain YPO0551 PF08245 Mur ligase middle domain YPO0552 PF00953 Glycosyl transferase family 4 YPO0552 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 YPO0553 PF08245 Mur ligase middle domain YPO0553 PF02875 Mur ligase family, glutamate ligase domain YPO0554 PF01098 Cell cycle protein YPO0555 PF03033 Glycosyltransferase family 28 N-terminal domain YPO0555 PF04101 Glycosyltransferase family 28 C-terminal domain YPO0556 PF08245 Mur ligase middle domain YPO0556 PF01225 Mur ligase family, catalytic domain YPO0556 PF02875 Mur ligase family, glutamate ligase domain YPO0557 PF01820 D-ala D-ala ligase N-terminus YPO0557 PF07478 D-ala D-ala ligase C-terminus YPO0558 PF03799 Cell division protein FtsQ YPO0558 PF08478 POTRA domain, FtsQ-type YPO0559 PF02491 SHS2 domain inserted in FTSA YPO0560 PF12327 FtsZ family, C-terminal domain YPO0560 PF00091 Tubulin/FtsZ family, GTPase domain YPO0561 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase YPO0563 PF06558 Secretion monitor precursor protein (SecM) YPO0564 PF01043 SecA preprotein cross-linking domain YPO0564 PF07517 SecA DEAD-like domain YPO0564 PF07516 SecA Wing and Scaffold domain YPO0564 PF02810 SEC-C motif YPO0565 PF00293 NUDIX domain YPO0566 PF01695 IstB-like ATP binding protein YPO0567 PF00665 Integrase core domain YPO0567 PF02796 Helix-turn-helix domain of resolvase YPO0568 PF07681 DoxX YPO0569a PF07332 Putative Actinobacterial Holin-X, holin superfamily III YPO0570 PF05957 Bacterial protein of unknown function (DUF883) YPO0573 PF13721 SecD export protein N-terminal TM region YPO0574 PF09335 SNARE associated Golgi protein YPO0576 PF00392 Bacterial regulatory proteins, gntR family YPO0576 PF07729 FCD domain YPO0577 PF07690 Major Facilitator Superfamily YPO0579 PF02614 Glucuronate isomerase YPO0580 PF08125 Mannitol dehydrogenase C-terminal domain YPO0580 PF01232 Mannitol dehydrogenase Rossmann domain YPO0581 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus YPO0581 PF08666 SAF domain YPO0582 PF10688 Bacterial inner membrane protein YPO0583 PF01797 Transposase IS200 like YPO0584 PF00375 Sodium:dicarboxylate symporter family YPO0585 PF01408 Oxidoreductase family, NAD-binding Rossmann fold YPO0586 PF01863 Protein of unknown function DUF45 YPO0587 PF03797 Autotransporter beta-domain YPO0588 PF05175 Methyltransferase small domain YPO0589 PF00724 NADH:flavin oxidoreductase / NADH oxidase family YPO0589 PF07992 Pyridine nucleotide-disulphide oxidoreductase YPO0590 PF03729 Short repeat of unknown function (DUF308) YPO0594 PF00092 von Willebrand factor type A domain YPO0596 PF02342 TerD domain YPO0597 PF00092 von Willebrand factor type A domain YPO0598 PF08479 POTRA domain, ShlB-type YPO0598 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB YPO0598 PF17287 POTRA domain YPO0599 PF05860 haemagglutination activity domain YPO0599 PF04829 Pre-toxin domain with VENN motif YPO0599 PF13018 Extended Signal Peptide of Type V secretion system YPO0599 PF13332 Hemagglutinin repeat YPO0601 PF13018 Extended Signal Peptide of Type V secretion system YPO0601 PF13332 Hemagglutinin repeat YPO0601 PF05860 haemagglutination activity domain YPO0601 PF04829 Pre-toxin domain with VENN motif YPO0609 PF17912 MalK OB fold domain YPO0609 PF00005 ABC transporter YPO0609 PF03459 TOBE domain YPO0610 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain YPO0611 PF00356 Bacterial regulatory proteins, lacI family YPO0612 PF13416 Bacterial extracellular solute-binding protein YPO0613 PF00528 Binding-protein-dependent transport system inner membrane component YPO0614 PF00528 Binding-protein-dependent transport system inner membrane component YPO0616 PF00933 Glycosyl hydrolase family 3 N terminal domain YPO0616 PF01915 Glycosyl hydrolase family 3 C-terminal domain YPO0616 PF14310 Fibronectin type III-like domain YPO0618 PF04632 Fusaric acid resistance protein family YPO0619 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion YPO0619 PF00529 HlyD membrane-fusion protein of T1SS YPO0627 PF01042 Endoribonuclease L-PSP YPO0631 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPO0631 PF03466 LysR substrate binding domain YPO0637 PF02796 Helix-turn-helix domain of resolvase YPO0637 PF00665 Integrase core domain YPO0638 PF01695 IstB-like ATP binding protein YPO0643 PF04545 Sigma-70, region 4 YPO0643 PF04546 Sigma-70, non-essential region YPO0643 PF04539 Sigma-70 region 3 YPO0643 PF04542 Sigma-70 region 2 YPO0643 PF00140 Sigma-70 factor, region 1.2 YPO0643 PF03979 Sigma-70 factor, region 1.1 YPO0644 PF01807 CHC2 zinc finger YPO0644 PF08278 DNA primase DnaG DnaB-binding YPO0644 PF10410 DnaB-helicase binding domain of primase YPO0644 PF08275 DNA primase catalytic core, N-terminal domain YPO0645 PF01165 Ribosomal protein S21 YPO0646 PF00814 Glycoprotease family YPO0647 PF02660 Glycerol-3-phosphate acyltransferase YPO0648 PF02152 Dihydroneopterin aldolase YPO0649 PF02673 Bacitracin resistance protein BacA YPO0650 PF01966 HD domain YPO0650 PF12627 Probable RNA and SrmB- binding site of polymerase A YPO0650 PF01743 Poly A polymerase head domain YPO0651 PF08239 Bacterial SH3 domain YPO0652 PF01928 CYTH domain YPO0653 PF03710 Glutamate-ammonia ligase adenylyltransferase YPO0653 PF08335 GlnD PII-uridylyltransferase YPO0654 PF01467 Cytidylyltransferase-like YPO0654 PF00294 pfkB family carbohydrate kinase YPO0655 PF13520 Amino acid permease YPO0656 PF04380 Membrane fusogenic activity YPO0658 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase YPO0659 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase YPO0660 PF03738 Glutathionylspermidine synthase preATP-grasp YPO0661 PF06693 Protein of unknown function (DUF1190) YPO0663 PF02321 Outer membrane efflux protein YPO0664 PF00293 NUDIX domain YPO0665 PF06853 Protein of unknown function (DUF1249) YPO0666 PF00149 Calcineurin-like phosphoesterase YPO0667 PF05728 Uncharacterised protein family (UPF0227) YPO0668 PF01751 Toprim domain YPO0668 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPO0668 PF00986 DNA gyrase B subunit, carboxyl terminus YPO0668 PF00204 DNA gyrase B YPO0669 PF03466 LysR substrate binding domain YPO0669 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPO0670 PF02525 Flavodoxin-like fold YPO0671 PF03989 DNA gyrase C-terminal domain, beta-propeller YPO0671 PF00521 DNA gyrase/topoisomerase IV, subunit A YPO0672 PF01553 Acyltransferase YPO0673 PF07732 Multicopper oxidase YPO0673 PF07731 Multicopper oxidase YPO0676 PF00248 Aldo/keto reductase family YPO0678 PF00465 Iron-containing alcohol dehydrogenase YPO0679 PF12833 Helix-turn-helix domain YPO0679 PF06719 AraC-type transcriptional regulator N-terminus YPO0680 PF09335 SNARE associated Golgi protein YPO0681 PF01053 Cys/Met metabolism PLP-dependent enzyme YPO0682 PF01618 MotA/TolQ/ExbB proton channel family YPO0683 PF02472 Biopolymer transport protein ExbD/TolR YPO0690 PF00437 Type II/IV secretion system protein YPO0696 PF01797 Transposase IS200 like YPO0697 PF01797 Transposase IS200 like YPO0698 PF13954 PapC N-terminal domain YPO0698 PF13953 PapC C-terminal domain YPO0698 PF00577 Outer membrane usher protein YPO0699 PF02753 Pili assembly chaperone PapD, C-terminal domain YPO0699 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain YPO0700 PF09222 Fimbrial adhesin F17-AG, lectin domain YPO0700 PF00419 Fimbrial protein YPO0701 PF01497 Periplasmic binding protein YPO0706 PF01312 FlhB HrpN YscU SpaS Family YPO0707 PF01311 Bacterial export proteins, family 1 YPO0708 PF01313 Bacterial export proteins, family 3 YPO0709 PF00813 FliP family YPO0710 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term YPO0712 PF00072 Response regulator receiver domain YPO0712 PF02954 Bacterial regulatory protein, Fis family YPO0712 PF00158 Sigma-54 interaction domain YPO0713 PF02049 Flagellar hook-basal body complex protein FliE YPO0714 PF01514 Secretory protein of YscJ/FliF family YPO0714 PF08345 Flagellar M-ring protein C-terminal YPO0717 PF18269 T3SS EscN ATPase C-terminal domain YPO0717 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain YPO0721 PF13144 Chaperone for flagella basal body P-ring formation YPO0722 PF00460 Flagella basal body rod protein YPO0723 PF06429 Flagellar basal body rod FlgEFG protein C-terminal YPO0723 PF00460 Flagella basal body rod protein YPO0724 PF13860 FlgD Ig-like domain YPO0724 PF13861 FlgD Tudor-like domain YPO0724 PF03963 Flagellar hook capping protein - N-terminal region YPO0725 PF00460 Flagella basal body rod protein YPO0725 PF07559 Flagellar basal body protein FlaE YPO0725 PF06429 Flagellar basal body rod FlgEFG protein C-terminal YPO0726 PF01797 Transposase IS200 like YPO0728 PF00460 Flagella basal body rod protein YPO0728 PF06429 Flagellar basal body rod FlgEFG protein C-terminal YPO0729 PF02107 Flagellar L-ring protein YPO0730 PF02119 Flagellar P-ring protein YPO0732 PF06429 Flagellar basal body rod FlgEFG protein C-terminal YPO0732 PF00460 Flagella basal body rod protein YPO0736 PF00486 Transcriptional regulatory protein, C terminal YPO0736 PF18500 CadC C-terminal domain 1 YPO0737 PF00700 Bacterial flagellin C-terminal helical region YPO0737 PF00669 Bacterial flagellin N-terminal helical region YPO0738 PF00700 Bacterial flagellin C-terminal helical region YPO0738 PF00669 Bacterial flagellin N-terminal helical region YPO0739 PF00669 Bacterial flagellin N-terminal helical region YPO0739 PF00700 Bacterial flagellin C-terminal helical region YPO0740 PF07196 Flagellin hook IN motif YPO0740 PF07195 Flagellar hook-associated protein 2 C-terminus YPO0740 PF02465 Flagellar hook-associated protein 2 N-terminus YPO0745 PF04545 Sigma-70, region 4 YPO0745 PF04542 Sigma-70 region 2 YPO0746 PF01618 MotA/TolQ/ExbB proton channel family YPO0747 PF13677 Membrane MotB of proton-channel complex MotA/MotB YPO0747 PF00691 OmpA family YPO0756 PF13333 Integrase core domain YPO0756 PF00665 Integrase core domain YPO0756 PF13276 HTH-like domain YPO0758 PF00356 Bacterial regulatory proteins, lacI family YPO0759 PF00939 Sodium:sulfate symporter transmembrane region YPO0762 PF03527 RHS protein YPO0762 PF05593 RHS Repeat YPO0764 PF04717 Type VI secretion system, phage-baseplate injector YPO0767 PF02447 GntP family permease YPO0770 PF00005 ABC transporter YPO0770 PF00664 ABC transporter transmembrane region YPO0771 PF00005 ABC transporter YPO0771 PF08021 Siderophore-interacting FAD-binding domain YPO0771 PF04954 Siderophore-interacting protein YPO0771 PF00664 ABC transporter transmembrane region YPO0773 PF00975 Thioesterase domain YPO0776 PF00668 Condensation domain YPO0776 PF00501 AMP-binding enzyme YPO0776 PF08242 Methyltransferase domain YPO0776 PF00550 Phosphopantetheine attachment site YPO0777 PF00501 AMP-binding enzyme YPO0777 PF00668 Condensation domain YPO0777 PF13193 AMP-binding enzyme C-terminal domain YPO0778 PF00668 Condensation domain YPO0778 PF08242 Methyltransferase domain YPO0778 PF00550 Phosphopantetheine attachment site YPO0778 PF00501 AMP-binding enzyme YPO0779 PF01695 IstB-like ATP binding protein YPO0780 PF02796 Helix-turn-helix domain of resolvase YPO0780 PF00665 Integrase core domain YPO0783 PF00303 Thymidylate synthase YPO0784 PF01790 Prolipoprotein diacylglyceryl transferase YPO0785 PF02896 PEP-utilising enzyme, TIM barrel domain YPO0785 PF00391 PEP-utilising enzyme, mobile domain YPO0785 PF05524 PEP-utilising enzyme, N-terminal YPO0785 PF01590 GAF domain YPO0786 PF00293 NUDIX domain YPO0789 PF02976 DNA mismatch repair enzyme MutH YPO0790 PF00248 Aldo/keto reductase family YPO0792 PF07690 Major Facilitator Superfamily YPO0793 PF01553 Acyltransferase YPO0793 PF00501 AMP-binding enzyme YPO0793 PF13193 AMP-binding enzyme C-terminal domain YPO0794 PF01568 Molydopterin dinucleotide binding domain YPO0794 PF00384 Molybdopterin oxidoreductase YPO0795 PF00356 Bacterial regulatory proteins, lacI family YPO0796 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain YPO0796 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain YPO0797 PF03466 LysR substrate binding domain YPO0797 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPO0798 PF07690 Major Facilitator Superfamily YPO0799 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPO0799 PF03466 LysR substrate binding domain YPO0802 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain YPO0802 PF02203 Tar ligand binding domain homologue YPO0802 PF00672 HAMP domain YPO0806 PF01478 Type IV leader peptidase family YPO0806 PF06750 Bacterial Peptidase A24 N-terminal domain YPO0811 PF07963 Prokaryotic N-terminal methylation motif YPO0811 PF02501 Type II secretion system (T2SS), protein I YPO0813 PF08334 Type II secretion system (T2SS), protein G YPO0813 PF07963 Prokaryotic N-terminal methylation motif YPO0816 PF03958 Bacterial type II/III secretion system short domain YPO0816 PF00263 Bacterial type II and III secretion system protein YPO0819 PF00484 Carbonic anhydrase YPO0824 PF09093 Lyase, catalytic YPO0824 PF02884 Polysaccharide lyase family 8, C-terminal beta-sandwich domain YPO0824 PF02278 Polysaccharide lyase family 8, super-sandwich domain YPO0824 PF09092 Lyase, N terminal YPO0825 PF01695 IstB-like ATP binding protein YPO0826 PF02796 Helix-turn-helix domain of resolvase YPO0826 PF00665 Integrase core domain YPO0829 PF00884 Sulfatase YPO0831 PF08220 DeoR-like helix-turn-helix domain YPO0831 PF00455 DeoR C terminal sensor domain YPO0832 PF08013 Tagatose 6 phosphate kinase YPO0833 PF01380 SIS domain YPO0834 PF03830 PTS system sorbose subfamily IIB component YPO0835 PF03609 PTS system sorbose-specific iic component YPO0836 PF03613 PTS system mannose/fructose/sorbose family IID component YPO0837 PF03610 PTS system fructose IIA component YPO0838 PF01979 Amidohydrolase family YPO0841 PF04055 Radical SAM superfamily YPO0841 PF13186 Iron-sulfur cluster-binding domain YPO0842 PF00884 Sulfatase YPO0844 PF01116 Fructose-bisphosphate aldolase class-II YPO0846 PF00356 Bacterial regulatory proteins, lacI family YPO0847 PF07690 Major Facilitator Superfamily YPO0848 PF16338 Domain of unknown function (DUF4968) YPO0848 PF01055 Glycosyl hydrolases family 31 YPO0848 PF17137 Domain of unknown function (DUF5110) YPO0848 PF13802 Galactose mutarotase-like YPO0849 PF00356 Bacterial regulatory proteins, lacI family YPO0850 PF02264 LamB porin YPO0851 PF00367 phosphotransferase system, EIIB YPO0851 PF02378 Phosphotransferase system, EIIC YPO0852 PF08532 Beta-galactosidase trimerisation domain YPO0852 PF08533 Beta-galactosidase C-terminal domain YPO0852 PF02449 Beta-galactosidase YPO0853 PF07745 Glycosyl hydrolase family 53 YPO0854 PF00528 Binding-protein-dependent transport system inner membrane component YPO0855 PF00528 Binding-protein-dependent transport system inner membrane component YPO0856 PF13416 Bacterial extracellular solute-binding protein YPO0857 PF00005 ABC transporter YPO0857 PF17912 MalK OB fold domain YPO0858 PF00005 ABC transporter YPO0859 PF02653 Branched-chain amino acid transport system / permease component YPO0860 PF13407 Periplasmic binding protein domain YPO0863 PF05708 Permuted papain-like amidase enzyme, YaeF/YiiX, C92 family YPO0864 PF03551 Transcriptional regulator PadR-like family YPO0881 PF15731 Antitoxin component of bacterial toxin-antitoxin system, MqsA YPO0882 PF15723 Motility quorum-sensing regulator, toxin of MqsA YPO0887 PF13356 Arm DNA-binding domain YPO0887 PF14659 Phage integrase, N-terminal SAM-like domain YPO0887 PF00589 Phage integrase family YPO0888 PF00152 tRNA synthetases class II (D, K and N) YPO0888 PF01336 OB-fold nucleic acid binding domain YPO0890 PF01368 DHH family YPO0890 PF17768 RecJ OB domain YPO0890 PF02272 DHHA1 domain YPO0891 PF13098 Thioredoxin-like domain YPO0891 PF10411 Disulfide bond isomerase protein N-terminus YPO0892 PF00589 Phage integrase family YPO0892 PF02899 Phage integrase, N-terminal SAM-like domain YPO0893 PF00258 Flavodoxin YPO0894 PF06123 Inner membrane protein CreD YPO0895 PF00512 His Kinase A (phospho-acceptor) domain YPO0895 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPO0895 PF00672 HAMP domain YPO0896 PF00072 Response regulator receiver domain YPO0896 PF00486 Transcriptional regulatory protein, C terminal YPO0896a PF07254 Membrane-bound toxin component of toxin-antitoxin system YPO0897 PF03937 Flavinator of succinate dehydrogenase YPO0898 PF01571 Aminomethyltransferase folate-binding domain YPO0900 PF03006 Haemolysin-III related YPO0902 PF05662 Coiled stalk of trimeric autotransporter adhesin YPO0902 PF05658 Head domain of trimeric autotransporter adhesin YPO0902 PF03895 YadA-like membrane anchor domain YPO0902 PF13018 Extended Signal Peptide of Type V secretion system YPO0905 PF02347 Glycine cleavage system P-protein YPO0906 PF01597 Glycine cleavage H-protein YPO0907 PF08669 Glycine cleavage T-protein C-terminal barrel domain YPO0907 PF01571 Aminomethyltransferase folate-binding domain YPO0908 PF01494 FAD binding domain YPO0909 PF01494 FAD binding domain YPO0910 PF05195 Aminopeptidase P, N-terminal domain YPO0910 PF00557 Metallopeptidase family M24 YPO0911 PF03695 Uncharacterised protein family (UPF0149) YPO0912 PF05164 Cell division protein ZapA YPO0913 PF01812 5-formyltetrahydrofolate cyclo-ligase family YPO0914 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain YPO0914 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain YPO0914 PF01842 ACT domain YPO0915 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) YPO0916 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPO0916 PF03466 LysR substrate binding domain YPO0917 PF04402 Protein of unknown function (DUF541) YPO0918 PF01810 LysE type translocator YPO0919 PF00924 Mechanosensitive ion channel YPO0919 PF05552 Conserved TM helix YPO0920 PF01116 Fructose-bisphosphate aldolase class-II YPO0921 PF00162 Phosphoglycerate kinase YPO0922 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain YPO0922 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain YPO0923 PF01695 IstB-like ATP binding protein YPO0924 PF00665 Integrase core domain YPO0924 PF02796 Helix-turn-helix domain of resolvase YPO0925 PF01797 Transposase IS200 like YPO0926 PF02780 Transketolase, C-terminal domain YPO0926 PF02779 Transketolase, pyrimidine binding domain YPO0926 PF00456 Transketolase, thiamine diphosphate binding domain YPO0927 PF01435 Peptidase family M48 YPO0928 PF00355 Rieske [2Fe-2S] domain YPO0929 PF17810 Arginine decarboxylase helical bundle domain YPO0929 PF17944 Arginine decarboxylase C-terminal helical extension YPO0929 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain YPO0931 PF02772 S-adenosylmethionine synthetase, central domain YPO0931 PF02773 S-adenosylmethionine synthetase, C-terminal domain YPO0931 PF00438 S-adenosylmethionine synthetase, N-terminal domain YPO0932 PF10263 SprT-like family YPO0932 PF17283 SprT-like zinc ribbon domain YPO0933 PF04231 Endonuclease I YPO0934 PF04452 RNA methyltransferase YPO0935 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain YPO0935 PF02951 Prokaryotic glutathione synthetase, N-terminal domain YPO0936 PF02622 Uncharacterized ACR, COG1678 YPO0937 PF03652 Holliday junction resolvase YPO0938 PF00795 Carbon-nitrogen hydrolase YPO0939 PF04371 Porphyromonas-type peptidyl-arginine deiminase YPO0940 PF00437 Type II/IV secretion system protein YPO0941 PF01168 Alanine racemase, N-terminal domain YPO0942 PF03807 NADP oxidoreductase coenzyme F420-dependent YPO0942 PF14748 Pyrroline-5-carboxylate reductase dimerisation YPO0943 PF02325 YGGT family YPO0944 PF02594 Uncharacterised ACR, YggU family COG1872 YPO0945 PF01725 Ham1 family YPO0946 PF06969 HemN C-terminal domain YPO0946 PF04055 Radical SAM superfamily YPO0947 PF11647 Membrane Localization Domain YPO0947 PF11713 Peptidase C80 family YPO0947 PF12146 Serine aminopeptidase, S33 YPO0947 PF16671 Actin cross-linking domain YPO0947 PF07634 RtxA repeat YPO0949 PF04960 Glutaminase YPO0950 PF04320 Protein with unknown function (DUF469) YPO0951 PF02390 Putative methyltransferase YPO0952 PF14815 NUDIX domain YPO0952 PF10576 Iron-sulfur binding domain of endonuclease III YPO0952 PF00730 HhH-GPD superfamily base excision DNA repair protein YPO0952 PF00633 Helix-hairpin-helix motif YPO0953 PF04362 Bacterial Fe(2+) trafficking YPO0954 PF01464 Transglycosylase SLT domain YPO0954 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain YPO0956 PF07715 TonB-dependent Receptor Plug Domain YPO0957 PF02653 Branched-chain amino acid transport system / permease component YPO0958 PF00005 ABC transporter YPO0959 PF13407 Periplasmic binding protein domain YPO0960 PF01276 Orn/Lys/Arg decarboxylase, major domain YPO0960 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain YPO0960 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain YPO0961 PF00589 Phage integrase family YPO0961 PF02899 Phage integrase, N-terminal SAM-like domain YPO0963 PF03400 IS1 transposase YPO0964 PF03811 InsA N-terminal domain YPO0964 PF12759 InsA C-terminal domain YPO0968 PF03811 InsA N-terminal domain YPO0968 PF12759 InsA C-terminal domain YPO0971 PF07724 AAA domain (Cdc48 subfamily) YPO0971 PF17871 AAA lid domain YPO0971 PF10431 C-terminal, D2-small domain, of ClpB protein YPO0971 PF00004 ATPase family associated with various cellular activities (AAA) YPO0974 PF05736 OprF membrane domain YPO0974 PF00691 OmpA family YPO0980A PF03400 IS1 transposase YPO0981 PF12759 InsA C-terminal domain YPO0981 PF03811 InsA N-terminal domain YPO0983 PF02517 CPBP intramembrane metalloprotease YPO0984 PF00765 Autoinducer synthase YPO0985 PF03472 Autoinducer binding domain YPO0985 PF00196 Bacterial regulatory proteins, luxR family YPO0992 PF06276 Ferric iron reductase FhuF-like transporter YPO0992 PF04183 IucA / IucC family YPO0993 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) YPO0994 PF00593 TonB dependent receptor YPO0994 PF07715 TonB-dependent Receptor Plug Domain YPO0997 PF13276 HTH-like domain YPO0997 PF00665 Integrase core domain YPO0997 PF13333 Integrase core domain YPO0998 PF00990 Diguanylate cyclase, GGDEF domain YPO0998 PF03707 Bacterial signalling protein N terminal repeat YPO0998 PF13188 PAS domain YPO0998 PF00563 EAL domain YPO1000 PF00529 HlyD membrane-fusion protein of T1SS YPO1000 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion YPO1001 PF00873 AcrB/AcrD/AcrF family YPO1002 PF07906 ShET2 enterotoxin, N-terminal region YPO1004 PF03797 Autotransporter beta-domain YPO1005 PF14496 C-terminal novel E3 ligase, LRR-interacting YPO1005 PF12468 Type III secretion system leucine rich repeat protein YPO1006 PF12468 Type III secretion system leucine rich repeat protein YPO1006 PF14496 C-terminal novel E3 ligase, LRR-interacting YPO1006 PF14496 C-terminal novel E3 ligase, LRR-interacting YPO1006 PF12468 Type III secretion system leucine rich repeat protein YPO1007 PF14496 C-terminal novel E3 ligase, LRR-interacting YPO1007 PF12468 Type III secretion system leucine rich repeat protein YPO1008 PF03806 AbgT putative transporter family YPO1009 PF07687 Peptidase dimerisation domain YPO1009 PF01546 Peptidase family M20/M25/M40 YPO1011 PF07715 TonB-dependent Receptor Plug Domain YPO1011 PF00593 TonB dependent receptor YPO1013 PF02796 Helix-turn-helix domain of resolvase YPO1013 PF00665 Integrase core domain YPO1014 PF01695 IstB-like ATP binding protein YPO1018 PF17946 RecC C-terminal domain YPO1019 PF16187 Middle or third domain of peptidase_M16 YPO1019 PF00675 Insulinase (Peptidase family M16) YPO1019 PF05193 Peptidase M16 inactive domain YPO1020 PF13361 UvrD-like helicase C-terminal domain YPO1020 PF12705 PD-(D/E)XK nuclease superfamily YPO1020 PF00580 UvrD/REP helicase N-terminal domain YPO1021 PF13538 UvrD-like helicase C-terminal domain YPO1022 PF00583 Acetyltransferase (GNAT) family YPO1022 PF00696 Amino acid kinase family YPO1023 PF01520 N-acetylmuramoyl-L-alanine amidase YPO1023 PF11741 AMIN domain YPO1025 PF03562 MltA specific insert domain YPO1025 PF06725 3D domain YPO1026 PF00899 ThiF family YPO1027 PF02657 Fe-S metabolism associated domain YPO1028 PF00266 Aminotransferase class-V YPO1029 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPO1029 PF03466 LysR substrate binding domain YPO1030 PF04241 Protein of unknown function (DUF423) YPO1031 PF01728 FtsJ-like methyltransferase YPO1031 PF18125 RlmM ferredoxin-like domain YPO1032 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain YPO1032 PF01367 5'-3' exonuclease, C-terminal SAM fold YPO1033 PF03641 Possible lysine decarboxylase YPO1033 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases YPO1033 PF11892 Domain of unknown function (DUF3412) YPO1034 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term YPO1034 PF14489 QueF-like protein YPO1035 PF07348 Syd protein (SUKH-2) YPO1036 PF01797 Transposase IS200 like YPO1037 PF04287 tRNA pseudouridine synthase C YPO1038 PF00849 RNA pseudouridylate synthase YPO1039 PF00258 Flavodoxin YPO1040 PF11944 Protein of unknown function (DUF3461) YPO1041 PF00132 Bacterial transferase hexapeptide (six repeats) YPO1041 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal YPO1041 PF14602 Hexapeptide repeat of succinyl-transferase YPO1042 PF01966 HD domain YPO1042 PF08335 GlnD PII-uridylyltransferase YPO1042 PF01842 ACT domain YPO1042 PF01909 Nucleotidyltransferase domain YPO1043 PF00557 Metallopeptidase family M24 YPO1044 PF00318 Ribosomal protein S2 YPO1045 PF00889 Elongation factor TS YPO1046 PF00696 Amino acid kinase family YPO1047 PF01765 Ribosome recycling factor YPO1048 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase YPO1048 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain YPO1048 PF13288 DXP reductoisomerase C-terminal domain YPO1049 PF01255 Putative undecaprenyl diphosphate synthase YPO1051 PF17820 PDZ domain YPO1051 PF02163 Peptidase family M50 YPO1052 PF01103 Surface antigen YPO1052 PF07244 Surface antigen variable number repeat YPO1053 PF03938 Outer membrane protein (OmpH-like) YPO1054 PF00132 Bacterial transferase hexapeptide (six repeats) YPO1054 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD YPO1055 PF07977 FabA-like domain YPO1056 PF00132 Bacterial transferase hexapeptide (six repeats) YPO1056 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 YPO1057 PF02684 Lipid-A-disaccharide synthetase YPO1058 PF01351 Ribonuclease HII YPO1059 PF14579 Helix-hairpin-helix motif YPO1059 PF17657 Bacterial DNA polymerase III alpha subunit finger domain YPO1059 PF02811 PHP domain YPO1059 PF07733 Bacterial DNA polymerase III alpha NTPase domain YPO1059 PF01336 OB-fold nucleic acid binding domain YPO1060 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit YPO1061 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily YPO1062 PF09179 TilS substrate binding domain YPO1062 PF11734 TilS substrate C-terminal domain YPO1062 PF01171 PP-loop family YPO1063 PF00034 Cytochrome c YPO1064 PF07073 Modulator of Rho-dependent transcription termination (ROF) YPO1064a PF06786 Uncharacterised protein family (UPF0253) YPO1065 PF07152 YaeQ protein YPO1066 PF00472 RF-1 domain YPO1067 PF04170 NlpE N-terminal domain YPO1067 PF17185 NlpE C-terminal OB domain YPO1068 PF03129 Anticodon binding domain YPO1068 PF04073 Aminoacyl-tRNA editing domain YPO1068 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) YPO1069 PF01980 tRNA-methyltransferase O YPO1069 PF18389 TrmO C-terminal domain YPO1070 PF16358 RcsF lipoprotein YPO1071 PF03180 NLPA lipoprotein YPO1072 PF00528 Binding-protein-dependent transport system inner membrane component YPO1073 PF00005 ABC transporter YPO1073 PF09383 NIL domain YPO1075 PF00248 Aldo/keto reductase family YPO1077 PF03372 Endonuclease/Exonuclease/phosphatase family YPO1078 PF01464 Transglycosylase SLT domain YPO1078 PF01476 LysM domain YPO1079 PF16123 Hydroxyacylglutathione hydrolase C-terminus YPO1079 PF00753 Metallo-beta-lactamase superfamily YPO1080 PF08241 Methyltransferase domain YPO1081 PF00075 RNase H YPO1082 PF00929 Exonuclease YPO1083 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin YPO1085 PF01695 IstB-like ATP binding protein YPO1086 PF02796 Helix-turn-helix domain of resolvase YPO1086 PF00665 Integrase core domain YPO1087 PF05973 Phage derived protein Gp49-like (DUF891) YPO1098 PF00589 Phage integrase family YPO1098 PF13356 Arm DNA-binding domain YPO1099 PF01797 Transposase IS200 like YPO1101 PF01668 SmpB protein YPO1102 PF03364 Polyketide cyclase / dehydrase and lipid transport YPO1103 PF03658 RnfH family Ubiquitin YPO1104 PF04355 SmpA / OmlA family YPO1105 PF02463 RecF/RecN/SMC N terminal domain YPO1106 PF01513 ATP-NAD kinase YPO1107 PF01025 GrpE YPO1108 PF00285 Citrate synthase, C-terminal domain YPO1109 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit YPO1110 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit YPO1111 PF02910 Fumarate reductase flavoprotein C-term YPO1111 PF00890 FAD binding domain YPO1112 PF13085 2Fe-2S iron-sulfur cluster binding domain YPO1113 PF02779 Transketolase, pyrimidine binding domain YPO1113 PF16078 2-oxoglutarate dehydrogenase N-terminus YPO1113 PF16870 2-oxoglutarate dehydrogenase C-terminal YPO1113 PF00676 Dehydrogenase E1 component YPO1114 PF02817 e3 binding domain YPO1114 PF00364 Biotin-requiring enzyme YPO1114 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) YPO1115 PF00549 CoA-ligase YPO1115 PF08442 ATP-grasp domain YPO1116 PF02629 CoA binding domain YPO1116 PF00549 CoA-ligase YPO1117 PF01654 Cytochrome bd terminal oxidase subunit I YPO1118 PF02322 Cytochrome bd terminal oxidase subunit II YPO1119 PF09600 Cyd operon protein YbgE (Cyd_oper_YbgE) YPO1120 PF03061 Thioesterase superfamily YPO1121 PF01618 MotA/TolQ/ExbB proton channel family YPO1122 PF02472 Biopolymer transport protein ExbD/TolR YPO1123 PF06519 TolA C-terminal YPO1123 PF06519 TolA C-terminal YPO1124 PF04052 TolB amino-terminal domain YPO1124 PF07676 WD40-like Beta Propeller Repeat YPO1125 PF00691 OmpA family YPO1126 PF16331 TolA binding protein trimerisation YPO1126 PF13174 Tetratricopeptide repeat YPO1127 PF02445 Quinolinate synthetase A protein YPO1128 PF04973 Nicotinamide mononucleotide transporter YPO1129 PF01545 Cation efflux family YPO1131 PF01695 IstB-like ATP binding protein YPO1132 PF02796 Helix-turn-helix domain of resolvase YPO1132 PF00665 Integrase core domain YPO1133 PF00300 Histidine phosphatase superfamily (branch 1) YPO1137 PF00288 GHMP kinases N terminal domain YPO1137 PF08544 GHMP kinases C terminal YPO1137 PF10509 Galactokinase galactose-binding signature YPO1138 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain YPO1138 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain YPO1139 PF16363 GDP-mannose 4,6 dehydratase YPO1142 PF00005 ABC transporter YPO1143 PF03459 TOBE domain YPO1143 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPO1144 PF10766 Multidrug efflux pump-associated protein AcrZ YPO1146 PF00528 Binding-protein-dependent transport system inner membrane component YPO1147 PF03459 TOBE domain YPO1147 PF00005 ABC transporter YPO1149 PF10282 Lactonase, 7-bladed beta-propeller YPO1150 PF00202 Aminotransferase class-III YPO1151 PF06968 Biotin and Thiamin Synthesis associated domain YPO1151 PF04055 Radical SAM superfamily YPO1152 PF00155 Aminotransferase class I and II YPO1153 PF08241 Methyltransferase domain YPO1156 PF17757 UvrB interaction domain YPO1156 PF04851 Type III restriction enzyme, res subunit YPO1156 PF02151 UvrB/uvrC motif YPO1156 PF12344 Ultra-violet resistance protein B YPO1156 PF00271 Helicase conserved C-terminal domain YPO1157 PF09905 DNA-binding protein VF530 YPO1158 PF01933 Uncharacterised protein family UPF0052 YPO1159 PF04055 Radical SAM superfamily YPO1159 PF06463 Molybdenum Cofactor Synthesis C YPO1160 PF01967 MoaC family YPO1161 PF02597 ThiS family YPO1162 PF02391 MoaE protein YPO1163 PF01027 Inhibitor of apoptosis-promoting Bax1 YPO1164 PF01797 Transposase IS200 like YPO1165 PF05199 GMC oxidoreductase YPO1165 PF00732 GMC oxidoreductase YPO1166 PF00171 Aldehyde dehydrogenase family YPO1167 PF00440 Bacterial regulatory proteins, tetR family YPO1167 PF13977 BetI-type transcriptional repressor, C-terminal YPO1168 PF02028 BCCT, betaine/carnitine/choline family transporter YPO1169 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPO1169 PF03466 LysR substrate binding domain YPO1171 PF01048 Phosphorylase superfamily YPO1173 PF01797 Transposase IS200 like YPO1175 PF01207 Dihydrouridine synthase (Dus) YPO1176 PF00768 D-alanyl-D-alanine carboxypeptidase YPO1177 PF01565 FAD binding domain YPO1177 PF09330 D-lactate dehydrogenase, membrane binding YPO1178 PF01928 CYTH domain YPO1179 PF01844 HNH endonuclease YPO1181 PF04226 Transglycosylase associated protein YPO1182 PF00005 ABC transporter YPO1184 PF00528 Binding-protein-dependent transport system inner membrane component YPO1185 PF00528 Binding-protein-dependent transport system inner membrane component YPO1186 PF07308 Protein of unknown function (DUF1456) YPO1187 PF02954 Bacterial regulatory protein, Fis family YPO1187 PF13188 PAS domain YPO1187 PF00158 Sigma-54 interaction domain YPO1188 PF02653 Branched-chain amino acid transport system / permease component YPO1189 PF02653 Branched-chain amino acid transport system / permease component YPO1190 PF00005 ABC transporter YPO1191 PF00005 ABC transporter YPO1194 PF00581 Rhodanese-like domain YPO1197 PF00528 Binding-protein-dependent transport system inner membrane component YPO1198 PF00005 ABC transporter YPO1199 PF00528 Binding-protein-dependent transport system inner membrane component YPO1200 PF13520 Amino acid permease YPO1201 PF01276 Orn/Lys/Arg decarboxylase, major domain YPO1201 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain YPO1201 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain YPO1203 PF00892 EamA-like transporter family YPO1205 PF00267 Gram-negative porin YPO1206 PF13307 Helicase C-terminal domain YPO1206 PF06733 DEAD_2 YPO1207 PF06628 Catalase-related immune-responsive YPO1207 PF00199 Catalase YPO1208 PF07437 YfaZ precursor YPO1209 PF03222 Tryptophan/tyrosine permease family YPO1210 PF00994 Probable molybdopterin binding domain YPO1211 PF03974 Ecotin YPO1212 PF00111 2Fe-2S iron-sulfur cluster binding domain YPO1213 PF00268 Ribonucleotide reductase, small chain YPO1214 PF00317 Ribonucleotide reductase, all-alpha domain YPO1214 PF02867 Ribonucleotide reductase, barrel domain YPO1214 PF03477 ATP cone domain YPO1216 PF03989 DNA gyrase C-terminal domain, beta-propeller YPO1216 PF00521 DNA gyrase/topoisomerase IV, subunit A YPO1217 PF00512 His Kinase A (phospho-acceptor) domain YPO1217 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPO1217 PF00072 Response regulator receiver domain YPO1217 PF09456 RcsC Alpha-Beta-Loop (ABL) YPO1218 PF00196 Bacterial regulatory proteins, luxR family YPO1218 PF00072 Response regulator receiver domain YPO1221 PF07690 Major Facilitator Superfamily YPO1223 PF01797 Transposase IS200 like YPO1224 PF00144 Beta-lactamase YPO1228 PF12706 Beta-lactamase superfamily domain YPO1229 PF00672 HAMP domain YPO1229 PF02743 Cache domain YPO1229 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain YPO1231 PF01278 Omptin family YPO1232 PF06183 DinI-like family YPO1233 PF01381 Helix-turn-helix YPO1233 PF00717 Peptidase S24-like YPO1234 PF06530 Phage antitermination protein Q YPO1235 PF07005 Sugar-binding N-terminal domain YPO1235 PF17042 Nucleotide-binding C-terminal domain YPO1236 PF00596 Class II Aldolase and Adducin N-terminal domain YPO1237 PF00455 DeoR C terminal sensor domain YPO1237 PF08220 DeoR-like helix-turn-helix domain YPO1238 PF01261 Xylose isomerase-like TIM barrel YPO1242 PF17482 Phage tail sheath C-terminal domain YPO1242 PF04984 Phage tail sheath protein subtilisin-like domain YPO1250 PF04865 Baseplate J-like protein YPO1252 PF07484 Phage Tail Collar Domain YPO1253 PF01418 Helix-turn-helix domain, rpiR family YPO1253 PF01380 SIS domain YPO1254 PF00232 Glycosyl hydrolase family 1 YPO1258 PF05638 Type VI secretion system effector, Hcp YPO1260 PF00884 Sulfatase YPO1260 PF11893 Domain of unknown function (DUF3413) YPO1261 PF07208 Protein of unknown function (DUF1414) YPO1262 PF04245 37-kD nucleoid-associated bacterial protein YPO1263 PF01797 Transposase IS200 like YPO1264 PF01386 Ribosomal L25p family YPO1265 PF00271 Helicase conserved C-terminal domain YPO1265 PF04851 Type III restriction enzyme, res subunit YPO1266 PF01479 S4 domain YPO1266 PF00849 RNA pseudouridylate synthase YPO1267 PF07690 Major Facilitator Superfamily YPO1269 PF13989 YejG-like protein YPO1270 PF08352 Oligopeptide/dipeptide transporter, C-terminal region YPO1270 PF00005 ABC transporter YPO1271 PF12911 N-terminal TM domain of oligopeptide transport permease C YPO1271 PF00528 Binding-protein-dependent transport system inner membrane component YPO1272 PF00528 Binding-protein-dependent transport system inner membrane component YPO1273 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle YPO1274 PF12792 CSS motif domain associated with EAL YPO1274 PF00563 EAL domain YPO1275 PF00877 NlpC/P60 family YPO1276 PF01569 PAP2 superfamily YPO1277 PF02492 CobW/HypB/UreG, nucleotide-binding domain YPO1277 PF07683 Cobalamin synthesis protein cobW C-terminal domain YPO1279 PF07729 FCD domain YPO1279 PF00392 Bacterial regulatory proteins, gntR family YPO1280 PF08125 Mannitol dehydrogenase C-terminal domain YPO1280 PF01232 Mannitol dehydrogenase Rossmann domain YPO1283 PF03786 D-mannonate dehydratase (UxuA) YPO1284 PF01132 Elongation factor P (EF-P) OB domain YPO1284 PF08207 Elongation factor P (EF-P) KOW-like domain YPO1284 PF09285 Elongation factor P, C-terminal YPO1285 PF03222 Tryptophan/tyrosine permease family YPO1286 PF03692 Putative zinc- or iron-chelating domain YPO1288 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain YPO1288 PF01842 ACT domain YPO1288 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain YPO1290 PF00171 Aldehyde dehydrogenase family YPO1291 PF02782 FGGY family of carbohydrate kinases, C-terminal domain YPO1291 PF00370 FGGY family of carbohydrate kinases, N-terminal domain YPO1292 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) YPO1294 PF00005 ABC transporter YPO1295 PF02653 Branched-chain amino acid transport system / permease component YPO1296 PF00293 NUDIX domain YPO1298 PF00381 PTS HPr component phosphorylation site YPO1298 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 YPO1299 PF00294 pfkB family carbohydrate kinase YPO1300 PF02378 Phosphotransferase system, EIIC YPO1300 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit YPO1301 PF00486 Transcriptional regulatory protein, C terminal YPO1302 PF17550 Family of unknown function YPO1304 PF02753 Pili assembly chaperone PapD, C-terminal domain YPO1304 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain YPO1305 PF13953 PapC C-terminal domain YPO1305 PF00577 Outer membrane usher protein YPO1305 PF13954 PapC N-terminal domain YPO1306 PF01261 Xylose isomerase-like TIM barrel YPO1307 PF03601 Conserved hypothetical protein 698 YPO1308 PF03466 LysR substrate binding domain YPO1308 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPO1309 PF00324 Amino acid permease YPO1311 PF01032 FecCD transport family YPO1312 PF00005 ABC transporter YPO1313 PF00593 TonB dependent receptor YPO1313 PF07715 TonB-dependent Receptor Plug Domain YPO1314 PF00043 Glutathione S-transferase, C-terminal domain YPO1314 PF13417 Glutathione S-transferase, N-terminal domain YPO1317 PF03180 NLPA lipoprotein YPO1318 PF00005 ABC transporter YPO1318 PF09383 NIL domain YPO1319 PF00528 Binding-protein-dependent transport system inner membrane component YPO1320 PF00768 D-alanyl-D-alanine carboxypeptidase YPO1320 PF07943 Penicillin-binding protein 5, C-terminal domain YPO1322 PF00455 DeoR C terminal sensor domain YPO1322 PF08220 DeoR-like helix-turn-helix domain YPO1323 PF01791 DeoC/LacD family aldolase YPO1324 PF01569 PAP2 superfamily YPO1326 PF06826 Predicted Permease Membrane Region YPO1326 PF02080 TrkA-C domain YPO1327 PF00462 Glutaredoxin YPO1328 PF07214 Protein of unknown function (DUF1418) YPO1330 PF10722 Putative bacterial sensory transduction regulator YPO1331 PF13416 Bacterial extracellular solute-binding protein YPO1332 PF00005 ABC transporter YPO1332 PF08402 TOBE domain YPO1333 PF00528 Binding-protein-dependent transport system inner membrane component YPO1334 PF00528 Binding-protein-dependent transport system inner membrane component YPO1335 PF10767 Protein of unknown function (DUF2593) YPO1336 PF05958 tRNA (Uracil-5-)-methyltransferase YPO1338 PF02796 Helix-turn-helix domain of resolvase YPO1338 PF00665 Integrase core domain YPO1339 PF01695 IstB-like ATP binding protein YPO1344 PF01032 FecCD transport family YPO1345 PF00005 ABC transporter YPO1346 PF03059 Nicotianamine synthase protein YPO1347 PF10100 Staphylopine dehydrogenase YPO1348 PF00892 EamA-like transporter family YPO1349 PF00528 Binding-protein-dependent transport system inner membrane component YPO1350 PF00528 Binding-protein-dependent transport system inner membrane component YPO1351 PF00497 Bacterial extracellular solute-binding proteins, family 3 YPO1352 PF00005 ABC transporter YPO1353 PF01817 Chorismate mutase type II YPO1354 PF12883 Protein of unknown function (DUF3828) YPO1355 PF01370 NAD dependent epimerase/dehydratase family YPO1356 PF11066 Protein of unknown function (DUF2867) YPO1356 PF13460 NAD(P)H-binding YPO1357 PF01212 Beta-eliminating lyase YPO1358 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain YPO1358 PF00205 Thiamine pyrophosphate enzyme, central domain YPO1358 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain YPO1359 PF00175 Oxidoreductase NAD-binding domain YPO1359 PF00970 Oxidoreductase FAD-binding domain YPO1359 PF00111 2Fe-2S iron-sulfur cluster binding domain YPO1360 PF03063 Prismane/CO dehydrogenase family YPO1361 PF03956 Lysine exporter LysO YPO1362 PF11398 Protein of unknown function (DUF2813) YPO1363 PF04393 Protein of unknown function (DUF535) YPO1364 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion YPO1365 PF00005 ABC transporter YPO1365 PF02687 FtsX-like permease family YPO1365 PF12704 MacB-like periplasmic core domain YPO1366 PF00313 'Cold-shock' DNA-binding domain YPO1367 PF02617 ATP-dependent Clp protease adaptor protein ClpS YPO1368 PF00004 ATPase family associated with various cellular activities (AAA) YPO1368 PF17871 AAA lid domain YPO1368 PF10431 C-terminal, D2-small domain, of ClpB protein YPO1368 PF02861 Clp amino terminal domain, pathogenicity island component YPO1368 PF07724 AAA domain (Cdc48 subfamily) YPO1369 PF01797 Transposase IS200 like YPO1370 PF01176 Translation initiation factor 1A / IF-1 YPO1371 PF03588 Leucyl/phenylalanyl-tRNA protein transferase YPO1372 PF00664 ABC transporter transmembrane region YPO1372 PF00005 ABC transporter YPO1373 PF00005 ABC transporter YPO1373 PF00664 ABC transporter transmembrane region YPO1374 PF07992 Pyridine nucleotide-disulphide oxidoreductase YPO1375 PF01037 Lrp/AsnC ligand binding domain YPO1376 PF01580 FtsK/SpoIIIE family YPO1376 PF09397 Ftsk gamma domain YPO1376 PF17854 FtsK alpha domain YPO1376 PF13491 4TM region of DNA translocase FtsK/SpoIIIE YPO1377 PF03548 Outer membrane lipoprotein carrier protein LolA YPO1378 PF16193 AAA C-terminal domain YPO1378 PF00004 ATPase family associated with various cellular activities (AAA) YPO1378 PF12002 MgsA AAA+ ATPase C terminal YPO1379 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) YPO1379 PF02403 Seryl-tRNA synthetase N-terminal domain YPO1380 PF07690 Major Facilitator Superfamily YPO1381 PF04055 Radical SAM superfamily YPO1383 PF01228 Glycine radical YPO1383 PF02901 Pyruvate formate lyase-like YPO1384 PF01226 Formate/nitrite transporter YPO1385 PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding YPO1385 PF18381 YcaO cyclodehydratase C-terminal domain YPO1386 PF00710 Asparaginase, N-terminal YPO1386 PF17763 Glutaminase/Asparaginase C-terminal domain YPO1387 PF05662 Coiled stalk of trimeric autotransporter adhesin YPO1387 PF03895 YadA-like membrane anchor domain YPO1387 PF03895 YadA-like membrane anchor domain YPO1387 PF05658 Head domain of trimeric autotransporter adhesin YPO1387 PF13018 Extended Signal Peptide of Type V secretion system YPO1387 PF13018 Extended Signal Peptide of Type V secretion system YPO1387 PF05662 Coiled stalk of trimeric autotransporter adhesin YPO1387 PF05658 Head domain of trimeric autotransporter adhesin YPO1389 PF00266 Aminotransferase class-V YPO1390 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) YPO1391 PF02224 Cytidylate kinase YPO1392 PF00575 S1 RNA binding domain YPO1393 PF00216 Bacterial DNA-binding protein YPO1394 PF00753 Metallo-beta-lactamase superfamily YPO1394 PF03772 Competence protein YPO1395 PF00664 ABC transporter transmembrane region YPO1395 PF00005 ABC transporter YPO1396 PF02606 Tetraacyldisaccharide-1-P 4'-kinase YPO1397 PF07063 Domain of unknown function (DUF1338) YPO1398 PF00313 'Cold-shock' DNA-binding domain YPO1399 PF03966 Trm112p-like protein YPO1400 PF02348 Cytidylyltransferase YPO1401 PF01636 Phosphotransferase enzyme family YPO1403 PF03882 MukF winged-helix domain YPO1403 PF17193 MukF C-terminal domain YPO1403 PF17192 MukF middle domain YPO1404 PF04288 MukE-like family YPO1405 PF04310 MukB N-terminal YPO1405 PF16330 MukB hinge domain YPO1406 PF01797 Transposase IS200 like YPO1407 PF03734 L,D-transpeptidase catalytic domain YPO1407 PF01471 Putative peptidoglycan binding domain YPO1408 PF05951 Bacterial protein of unknown function (DUF882) YPO1409 PF00753 Metallo-beta-lactamase superfamily YPO1410 PF00155 Aminotransferase class I and II YPO1412 PF01336 OB-fold nucleic acid binding domain YPO1412 PF00152 tRNA synthetases class II (D, K and N) YPO1413 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family YPO1413 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain YPO1414 PF01433 Peptidase family M1 domain YPO1414 PF17432 Domain of unknown function (DUF3458_C) ARM repeats YPO1414 PF11940 Domain of unknown function (DUF3458) Ig-like fold YPO1415 PF01180 Dihydroorotate dehydrogenase YPO1416 PF07126 Cell-division protein ZapC YPO1417 PF03476 MOSC N-terminal beta barrel domain YPO1417 PF03473 MOSC domain YPO1417 PF00111 2Fe-2S iron-sulfur cluster binding domain YPO1418 PF01170 Putative RNA methylase family UPF0020 YPO1418 PF10672 S-adenosylmethionine-dependent methyltransferase YPO1418 PF02926 THUMP domain YPO1419 PF16326 ABC transporter C-terminal domain YPO1419 PF12848 ABC transporter YPO1419 PF00005 ABC transporter YPO1420 PF04403 Paraquat-inducible protein A YPO1421 PF02470 MlaD protein YPO1422 PF03886 ABC-type transport auxiliary lipoprotein component YPO1423a PF04957 Ribosome modulation factor YPO1424 PF01797 Transposase IS200 like YPO1426 PF01695 IstB-like ATP binding protein YPO1427 PF02796 Helix-turn-helix domain of resolvase YPO1427 PF00665 Integrase core domain YPO1430 PF07977 FabA-like domain YPO1431 PF05362 Lon protease (S16) C-terminal proteolytic domain YPO1431 PF13654 AAA domain YPO1433 PF06303 MatP N-terminal domain YPO1433 PF17414 MatP C-terminal ribbon-helix-helix domain YPO1434 PF01797 Transposase IS200 like YPO1435 PF00691 OmpA family YPO1435 PF01389 OmpA-like transmembrane domain YPO1436 PF03846 Cell division inhibitor SulA YPO1437 PF04994 TfoX C-terminal domain YPO1437 PF04993 TfoX N-terminal domain YPO1438 PF12805 FUSC-like inner membrane protein yccS YPO1439 PF03733 Inner membrane component domain YPO1440 PF13361 UvrD-like helicase C-terminal domain YPO1440 PF00580 UvrD/REP helicase N-terminal domain YPO1440 PF12462 DNA helicase IV / RNA helicase N terminal YPO1441 PF02142 MGS-like domain YPO1442 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) YPO1443 PF13380 CoA binding domain YPO1444 PF08755 Hemimethylated DNA-binding protein YccV like YPO1445 PF10672 S-adenosylmethionine-dependent methyltransferase YPO1445 PF17785 PUA-like domain YPO1446 PF00708 Acylphosphatase YPO1447 PF04358 DsrC like protein YPO1451 PF01565 FAD binding domain YPO1451 PF08031 Berberine and berberine like YPO1454 PF07977 FabA-like domain YPO1455 PF00109 Beta-ketoacyl synthase, N-terminal domain YPO1455 PF02801 Beta-ketoacyl synthase, C-terminal domain YPO1457 PF08540 Hydroxymethylglutaryl-coenzyme A synthase C terminal YPO1457 PF01154 Hydroxymethylglutaryl-coenzyme A synthase N terminal YPO1459 PF00378 Enoyl-CoA hydratase/isomerase YPO1462 PF00550 Phosphopantetheine attachment site YPO1463 PF00698 Acyl transferase domain YPO1469 PF05736 OprF membrane domain YPO1469 PF00691 OmpA family YPO1471 PF07724 AAA domain (Cdc48 subfamily) YPO1471 PF17871 AAA lid domain YPO1471 PF10431 C-terminal, D2-small domain, of ClpB protein YPO1471 PF00004 ATPase family associated with various cellular activities (AAA) YPO1491 PF00005 ABC transporter YPO1491 PF12848 ABC transporter YPO1493 PF00872 Transposase, Mutator family YPO1494 PF00899 ThiF family YPO1495 PF03453 MoeA N-terminal region (domain I and II) YPO1495 PF00994 Probable molybdopterin binding domain YPO1495 PF03454 MoeA C-terminal region (domain IV) YPO1497 PF00005 ABC transporter YPO1498 PF13533 Biotin-lipoyl like YPO1501 PF00756 Putative esterase YPO1502 PF00107 Zinc-binding dehydrogenase YPO1502 PF08240 Alcohol dehydrogenase GroES-like domain YPO1503 PF03466 LysR substrate binding domain YPO1503 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPO1504 PF06779 Uncharacterised MFS-type transporter YbfB YPO1505 PF01227 GTP cyclohydrolase I YPO1506 PF04235 Protein of unknown function (DUF418) YPO1507 PF13407 Periplasmic binding protein domain YPO1508 PF00005 ABC transporter YPO1509 PF02653 Branched-chain amino acid transport system / permease component YPO1510 PF02698 DUF218 domain YPO1511 PF00390 Malic enzyme, N-terminal domain YPO1511 PF03949 Malic enzyme, NAD binding domain YPO1512 PF08211 Cytidine and deoxycytidylate deaminase zinc-binding region YPO1512 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region YPO1513 PF04172 LrgB-like family YPO1514 PF03788 LrgA family YPO1515 PF07690 Major Facilitator Superfamily YPO1519 PF01695 IstB-like ATP binding protein YPO1520 PF00665 Integrase core domain YPO1520 PF02796 Helix-turn-helix domain of resolvase YPO1521 PF01797 Transposase IS200 like YPO1522 PF09334 tRNA synthetases class I (M) YPO1522 PF01588 Putative tRNA binding domain YPO1523 PF10609 NUBPL iron-transfer P-loop NTPase YPO1524 PF00485 Phosphoribulokinase / Uridine kinase family YPO1525 PF00692 dUTPase YPO1526 PF05170 AsmA family YPO1527 PF03741 Integral membrane protein TerC family YPO1527 PF03471 Transporter associated domain YPO1527 PF00571 CBS domain YPO1528 PF11575 FhuF 2Fe-2S C-terminal domain YPO1528 PF06276 Ferric iron reductase FhuF-like transporter YPO1529 PF00282 Pyridoxal-dependent decarboxylase conserved domain YPO1530 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) YPO1532 PF06276 Ferric iron reductase FhuF-like transporter YPO1532 PF04183 IucA / IucC family YPO1533 PF00005 ABC transporter YPO1534 PF01032 FecCD transport family YPO1535 PF01032 FecCD transport family YPO1536 PF01497 Periplasmic binding protein YPO1537 PF07660 Secretin and TonB N terminus short domain YPO1537 PF00593 TonB dependent receptor YPO1537 PF07715 TonB-dependent Receptor Plug Domain YPO1538 PF04183 IucA / IucC family YPO1538 PF06276 Ferric iron reductase FhuF-like transporter YPO1539 PF00483 Nucleotidyl transferase YPO1540 PF00483 Nucleotidyl transferase YPO1541 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase YPO1541 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain YPO1542 PF01502 Phosphoribosyl-AMP cyclohydrolase YPO1542 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase YPO1543 PF00977 Histidine biosynthesis protein YPO1544 PF00977 Histidine biosynthesis protein YPO1545 PF00117 Glutamine amidotransferase class-I YPO1546 PF00475 Imidazoleglycerol-phosphate dehydratase YPO1547 PF00155 Aminotransferase class I and II YPO1548 PF00815 Histidinol dehydrogenase YPO1549 PF08029 HisG, C-terminal domain YPO1549 PF01634 ATP phosphoribosyltransferase YPO1551 PF01370 NAD dependent epimerase/dehydratase family YPO1553 PF02653 Branched-chain amino acid transport system / permease component YPO1556 PF00465 Iron-containing alcohol dehydrogenase YPO1557 PF13520 Amino acid permease YPO1558 PF08411 Exonuclease C-terminal YPO1558 PF00929 Exonuclease YPO1560 PF04363 Protein of unknown function (DUF496) YPO1561 PF00872 Transposase, Mutator family YPO1563 PF07690 Major Facilitator Superfamily YPO1564 PF04134 Protein of unknown function, DUF393 YPO1566 PF01557 Fumarylacetoacetate (FAA) hydrolase family YPO1567 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain YPO1567 PF13378 Enolase C-terminal domain-like YPO1569 PF01070 FMN-dependent dehydrogenase YPO1570 PF00764 Arginosuccinate synthase YPO1571 PF01554 MatE YPO1573 PF01522 Polysaccharide deacetylase YPO1575 PF09831 Uncharacterized protein conserved in bacteria (DUF2058) YPO1576 PF00072 Response regulator receiver domain YPO1576 PF00196 Bacterial regulatory proteins, luxR family YPO1577 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component YPO1579 PF03480 Bacterial extracellular solute-binding protein, family 7 YPO1580 PF01648 4'-phosphopantetheinyl transferase superfamily YPO1580 PF17837 4'-phosphopantetheinyl transferase N-terminal domain YPO1581 PF16874 Glycosyl hydrolase family 36 C-terminal domain YPO1581 PF16875 Glycosyl hydrolase family 36 N-terminal domain YPO1583 PF00872 Transposase, Mutator family YPO1586 PF06183 DinI-like family YPO1587 PF01979 Amidohydrolase family YPO1588 PF03992 Antibiotic biosynthesis monooxygenase YPO1589 PF00872 Transposase, Mutator family YPO1590 PF00575 S1 RNA binding domain YPO1590 PF10150 Ribonuclease E/G family YPO1590 PF12111 Polyribonucleotide phosphorylase C terminal YPO1591 PF01479 S4 domain YPO1591 PF00849 RNA pseudouridylate synthase YPO1592 PF01797 Transposase IS200 like YPO1593 PF02545 Maf-like protein YPO1594 PF02620 Large ribosomal RNA subunit accumulation protein YceD YPO1595 PF01783 Ribosomal L32p protein family YPO1596 PF02504 Fatty acid synthesis protein YPO1597 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal YPO1597 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III YPO1598 PF00698 Acyl transferase domain YPO1600 PF00550 Phosphopantetheine attachment site YPO1601 PF02801 Beta-ketoacyl synthase, C-terminal domain YPO1601 PF00109 Beta-ketoacyl synthase, N-terminal domain YPO1602 PF01797 Transposase IS200 like YPO1603 PF01063 Amino-transferase class IV YPO1604 PF02618 YceG-like family YPO1605 PF02223 Thymidylate kinase YPO1606 PF09115 DNA polymerase III, delta subunit, C terminal YPO1607 PF01026 TatD related DNase YPO1608 PF02378 Phosphotransferase system, EIIC YPO1608 PF00367 phosphotransferase system, EIIB YPO1609 PF01797 Transposase IS200 like YPO1610 PF08501 Shikimate dehydrogenase substrate binding domain YPO1611 PF01230 HIT domain YPO1612 PF07233 Protein of unknown function (DUF1425) YPO1613 PF13036 Peptidoglycan-synthase activator LpoB YPO1613 PF08139 Prokaryotic membrane lipoprotein lipid attachment site YPO1614 PF01636 Phosphotransferase enzyme family YPO1615 PF00933 Glycosyl hydrolase family 3 N terminal domain YPO1616 PF05728 Uncharacterised protein family (UPF0227) YPO1617 PF07992 Pyridine nucleotide-disulphide oxidoreductase YPO1621 PF00872 Transposase, Mutator family YPO1622 PF01695 IstB-like ATP binding protein YPO1623 PF02796 Helix-turn-helix domain of resolvase YPO1623 PF00665 Integrase core domain YPO1624 PF05433 Glycine zipper 2TM domain YPO1625 PF17757 UvrB interaction domain YPO1625 PF03461 TRCF domain YPO1625 PF00271 Helicase conserved C-terminal domain YPO1625 PF00270 DEAD/DEAH box helicase YPO1625 PF02559 CarD-like/TRCF domain YPO1626 PF02687 FtsX-like permease family YPO1626 PF12704 MacB-like periplasmic core domain YPO1627 PF00005 ABC transporter YPO1628 PF12704 MacB-like periplasmic core domain YPO1628 PF02687 FtsX-like permease family YPO1629 PF00480 ROK family YPO1630 PF02146 Sir2 family YPO1631 PF01546 Peptidase family M20/M25/M40 YPO1631 PF07687 Peptidase dimerisation domain YPO1632 PF08007 Cupin superfamily protein YPO1633 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPO1633 PF08918 PhoQ Sensor YPO1634 PF00486 Transcriptional regulatory protein, C terminal YPO1634 PF00072 Response regulator receiver domain YPO1636 PF08328 Adenylosuccinate lyase C-terminal YPO1636 PF00206 Lyase YPO1637 PF04356 Protein of unknown function (DUF489) YPO1639 PF00293 NUDIX domain YPO1640 PF00849 RNA pseudouridylate synthase YPO1641 PF00180 Isocitrate/isopropylmalate dehydrogenase YPO1642 PF00356 Bacterial regulatory proteins, lacI family YPO1642 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family YPO1644 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain YPO1644 PF08447 PAS fold YPO1645 PF05368 NmrA-like family YPO1646 PF01638 HxlR-like helix-turn-helix YPO1648 PF00328 Histidine phosphatase superfamily (branch 2) YPO1649 PF14001 YdfZ protein YPO1651 PF13404 AsnC-type helix-turn-helix domain YPO1651 PF01037 Lrp/AsnC ligand binding domain YPO1652 PF10777 Inner membrane protein YlaC YPO1653 PF08659 KR domain YPO1653 PF00698 Acyl transferase domain YPO1653 PF08240 Alcohol dehydrogenase GroES-like domain YPO1653 PF00107 Zinc-binding dehydrogenase YPO1653 PF16197 Ketoacyl-synthetase C-terminal extension YPO1653 PF00109 Beta-ketoacyl synthase, N-terminal domain YPO1653 PF02801 Beta-ketoacyl synthase, C-terminal domain YPO1653 PF00550 Phosphopantetheine attachment site YPO1653 PF14765 Polyketide synthase dehydratase YPO1654 PF02836 Glycosyl hydrolases family 2, TIM barrel domain YPO1654 PF02929 Beta galactosidase small chain YPO1654 PF16353 Domain of unknown function(DUF4981) YPO1654 PF00703 Glycosyl hydrolases family 2 YPO1654 PF02837 Glycosyl hydrolases family 2, sugar binding domain YPO1655 PF00313 'Cold-shock' DNA-binding domain YPO1656 PF10781 Dextransucrase DSRB YPO1660 PF02308 MgtC family YPO1661 PF00689 Cation transporting ATPase, C-terminus YPO1661 PF00690 Cation transporter/ATPase, N-terminus YPO1663 PF05280 Flagellar transcriptional activator (FlhC) YPO1664 PF01618 MotA/TolQ/ExbB proton channel family YPO1665 PF00691 OmpA family YPO1665 PF13677 Membrane MotB of proton-channel complex MotA/MotB YPO1666 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPO1666 PF02895 Signal transducing histidine kinase, homodimeric domain YPO1666 PF01584 CheW-like domain YPO1666 PF01627 Hpt domain YPO1666 PF09078 CheY binding YPO1667 PF01584 CheW-like domain YPO1668 PF07690 Major Facilitator Superfamily YPO1669 PF01042 Endoribonuclease L-PSP YPO1671 PF08348 YheO-like PAS domain YPO1671 PF13309 HTH domain YPO1672 PF12951 Passenger-associated-transport-repeat YPO1675 PF02203 Tar ligand binding domain homologue YPO1675 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain YPO1675 PF00672 HAMP domain YPO1678 PF01739 CheR methyltransferase, SAM binding domain YPO1678 PF03705 CheR methyltransferase, all-alpha domain YPO1679 PF00072 Response regulator receiver domain YPO1679 PF01339 CheB methylesterase YPO1680 PF00072 Response regulator receiver domain YPO1681 PF04344 Chemotaxis phosphatase, CheZ YPO1683 PF01510 N-acetylmuramoyl-L-alanine amidase YPO1687 PF00842 Alanine racemase, C-terminal domain YPO1687 PF01168 Alanine racemase, N-terminal domain YPO1691 PF01695 IstB-like ATP binding protein YPO1692 PF02796 Helix-turn-helix domain of resolvase YPO1692 PF00665 Integrase core domain YPO1694 PF07351 Protein of unknown function (DUF1480) YPO1697 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain YPO1697 PF02753 Pili assembly chaperone PapD, C-terminal domain YPO1701 PF02470 MlaD protein YPO1702 PF04403 Paraquat-inducible protein A YPO1703 PF13185 GAF domain YPO1704 PF17516 ProQ C-terminal domain YPO1704 PF04352 ProQ/FINO family YPO1705 PF17804 Tail specific protease N-terminal domain YPO1705 PF00595 PDZ domain YPO1705 PF11818 C-terminal domain of tail specific protease (DUF3340) YPO1705 PF03572 Peptidase family S41 YPO1706 PF01435 Peptidase family M48 YPO1707 PF00419 Fimbrial protein YPO1708 PF02753 Pili assembly chaperone PapD, C-terminal domain YPO1708 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain YPO1709 PF13953 PapC C-terminal domain YPO1709 PF00577 Outer membrane usher protein YPO1709 PF13954 PapC N-terminal domain YPO1711 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain YPO1711 PF02753 Pili assembly chaperone PapD, C-terminal domain YPO1712 PF07690 Major Facilitator Superfamily YPO1713 PF14583 Oligogalacturonate lyase YPO1714 PF01614 Bacterial transcriptional regulator YPO1714 PF09339 IclR helix-turn-helix domain YPO1715 PF01510 N-acetylmuramoyl-L-alanine amidase YPO1717 PF04307 LexA-binding, inner membrane-associated putative hydrolase YPO1718 PF06178 Oligogalacturonate-specific porin protein (KdgM) YPO1719 PF01547 Bacterial extracellular solute-binding protein YPO1720 PF17912 MalK OB fold domain YPO1720 PF03459 TOBE domain YPO1720 PF00005 ABC transporter YPO1721 PF00528 Binding-protein-dependent transport system inner membrane component YPO1722 PF00528 Binding-protein-dependent transport system inner membrane component YPO1723 PF06917 Periplasmic pectate lyase YPO1725 PF04962 KduI/IolB family YPO1727 PF00872 Transposase, Mutator family YPO1729 PF02796 Helix-turn-helix domain of resolvase YPO1729 PF00665 Integrase core domain YPO1730 PF01695 IstB-like ATP binding protein YPO1732 PF06167 Glucose-regulated metallo-peptidase M90 YPO1735 PF00005 ABC transporter YPO1735 PF00664 ABC transporter transmembrane region YPO1737 PF12833 Helix-turn-helix domain YPO1738 PF10964 Protein of unknown function (DUF2766) YPO1739 PF13996 YobH-like protein YPO1740 PF13974 YebO-like protein YPO1743 PF00324 Amino acid permease YPO1744 PF07017 Antimicrobial peptide resistance and lipid A acylation protein PagP YPO1745 PF10736 Protein of unknown function (DUF2627) YPO1746 PF00313 'Cold-shock' DNA-binding domain YPO1748 PF13847 Methyltransferase domain YPO1750 PF00665 Integrase core domain YPO1750 PF02796 Helix-turn-helix domain of resolvase YPO1751 PF01695 IstB-like ATP binding protein YPO1753 PF00593 TonB dependent receptor YPO1753 PF07715 TonB-dependent Receptor Plug Domain YPO1754 PF02659 Putative manganese efflux pump YPO1755 PF06173 Protein of unknown function (DUF986) YPO1756 PF03613 PTS system mannose/fructose/sorbose family IID component YPO1757 PF03609 PTS system sorbose-specific iic component YPO1758 PF03610 PTS system fructose IIA component YPO1758 PF03830 PTS system sorbose subfamily IIB component YPO1759 PF03741 Integral membrane protein TerC family YPO1759 PF03471 Transporter associated domain YPO1760 PF01047 MarR family YPO1763 PF00171 Aldehyde dehydrogenase family YPO1764 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase YPO1765 PF02962 5-carboxymethyl-2-hydroxymuconate isomerase YPO1766 PF01557 Fumarylacetoacetate (FAA) hydrolase family YPO1767 PF03328 HpcH/HpaI aldolase/citrate lyase family YPO1768 PF07690 Major Facilitator Superfamily YPO1769 PF03241 4-hydroxyphenylacetate 3-hydroxylase C terminal YPO1769 PF11794 4-hydroxyphenylacetate 3-hydroxylase N terminal YPO1770 PF01613 Flavin reductase like domain YPO1771 PF03315 Serine dehydratase beta chain YPO1771 PF03313 Serine dehydratase alpha chain YPO1772 PF00293 NUDIX domain YPO1773 PF00425 chorismate binding enzyme YPO1773 PF04715 Anthranilate synthase component I, N terminal region YPO1774 PF03701 Uncharacterised protein family (UPF0181) YPO1775 PF02222 ATP-grasp domain YPO1776 PF00270 DEAD/DEAH box helicase YPO1776 PF03880 DbpA RNA binding domain YPO1776 PF00271 Helicase conserved C-terminal domain YPO1777 PF07130 YebG protein YPO1779 PF13995 YebF-like protein YPO1780 PF00326 Prolyl oligopeptidase family YPO1780 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain YPO1781 PF00561 alpha/beta hydrolase fold YPO1782 PF06440 DNA polymerase III, theta subunit YPO1783 PF00210 Ferritin-like domain YPO1784 PF04234 CopC domain YPO1786 PF10709 Protein of unknown function (DUF2511) YPO1790 PF01312 FlhB HrpN YscU SpaS Family YPO1791 PF00771 FHIPEP family YPO1792 PF06366 Flagellar protein FlhE YPO1794 PF01797 Transposase IS200 like YPO1796 PF05130 FlgN protein YPO1797 PF04316 Anti-sigma-28 factor, FlgM YPO1798 PF17656 FlgA N-terminal domain YPO1798 PF13144 Chaperone for flagella basal body P-ring formation YPO1799 PF00460 Flagella basal body rod protein YPO1800 PF06429 Flagellar basal body rod FlgEFG protein C-terminal YPO1800 PF00460 Flagella basal body rod protein YPO1801 PF13861 FlgD Tudor-like domain YPO1801 PF13860 FlgD Ig-like domain YPO1801 PF03963 Flagellar hook capping protein - N-terminal region YPO1802 PF06429 Flagellar basal body rod FlgEFG protein C-terminal YPO1802 PF07559 Flagellar basal body protein FlaE YPO1802 PF00460 Flagella basal body rod protein YPO1803 PF00460 Flagella basal body rod protein YPO1803 PF06429 Flagellar basal body rod FlgEFG protein C-terminal YPO1804 PF06429 Flagellar basal body rod FlgEFG protein C-terminal YPO1804 PF00460 Flagella basal body rod protein YPO1805 PF02107 Flagellar L-ring protein YPO1806 PF02119 Flagellar P-ring protein YPO1807 PF10135 Rod binding protein YPO1807 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase YPO1808 PF00460 Flagella basal body rod protein YPO1808 PF06429 Flagellar basal body rod FlgEFG protein C-terminal YPO1809 PF00669 Bacterial flagellin N-terminal helical region YPO1810 PF04198 Putative sugar-binding domain YPO1811 PF00596 Class II Aldolase and Adducin N-terminal domain YPO1812 PF02653 Branched-chain amino acid transport system / permease component YPO1813 PF13407 Periplasmic binding protein domain YPO1814 PF00005 ABC transporter YPO1815 PF02653 Branched-chain amino acid transport system / permease component YPO1816 PF00294 pfkB family carbohydrate kinase YPO1819 PF01311 Bacterial export proteins, family 1 YPO1820 PF00813 FliP family YPO1820a PF01313 Bacterial export proteins, family 3 YPO1821 PF04347 Flagellar biosynthesis protein, FliO YPO1822 PF16973 Flagellar motor switch protein FliN N-terminal YPO1822 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term YPO1823 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term YPO1823 PF02154 Flagellar motor switch protein FliM YPO1824 PF03748 Flagellar basal body-associated protein FliL YPO1825 PF02120 Flagellar hook-length control protein FliK YPO1826 PF02050 Flagellar FliJ protein YPO1827 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain YPO1827 PF18269 T3SS EscN ATPase C-terminal domain YPO1828 PF02108 Flagellar assembly protein FliH YPO1829 PF14842 FliG N-terminal domain YPO1829 PF14841 FliG middle domain YPO1829 PF01706 FliG C-terminal domain YPO1830 PF01514 Secretory protein of YscJ/FliF family YPO1830 PF08345 Flagellar M-ring protein C-terminal YPO1831 PF02049 Flagellar hook-basal body complex protein FliE YPO1834 PF00730 HhH-GPD superfamily base excision DNA repair protein YPO1837 PF12833 Helix-turn-helix domain YPO1839 PF05400 Flagellar protein FliT YPO1840 PF02561 Flagellar protein FliS YPO1841 PF02465 Flagellar hook-associated protein 2 N-terminus YPO1841 PF07195 Flagellar hook-associated protein 2 C-terminus YPO1841 PF07196 Flagellin hook IN motif YPO1842 PF00700 Bacterial flagellin C-terminal helical region YPO1842 PF08884 Flagellin D3 domain YPO1842 PF00669 Bacterial flagellin N-terminal helical region YPO1843 PF04542 Sigma-70 region 2 YPO1843 PF04539 Sigma-70 region 3 YPO1843 PF04545 Sigma-70, region 4 YPO1844 PF02899 Phage integrase, N-terminal SAM-like domain YPO1845 PF00291 Pyridoxal-phosphate dependent enzyme YPO1851 PF00171 Aldehyde dehydrogenase family YPO1851 PF18327 Proline utilization A proline dehydrogenase N-terminal domain YPO1851 PF01619 Proline dehydrogenase YPO1851 PF14850 DNA-binding domain of Proline dehydrogenase YPO1853 PF00474 Sodium:solute symporter family YPO1854 PF03239 Iron permease FTR1 family YPO1855 PF13473 Cupredoxin-like domain YPO1855 PF09375 Imelysin YPO1856 PF04261 Dyp-type peroxidase family YPO1857 PF03358 NADPH-dependent FMN reductase YPO1858 PF01344 Kelch motif YPO1859 PF00324 Amino acid permease YPO1860 PF13505 Outer membrane protein beta-barrel domain YPO1863 PF06942 GlpM protein YPO1864 PF10769 Protein of unknown function (DUF2594) YPO1865 PF00072 Response regulator receiver domain YPO1865 PF00196 Bacterial regulatory proteins, luxR family YPO1866 PF02151 UvrB/uvrC motif YPO1866 PF08459 UvrC Helix-hairpin-helix N-terminal YPO1866 PF01541 GIY-YIG catalytic domain YPO1867 PF01066 CDP-alcohol phosphatidyltransferase YPO1872 PF05638 Type VI secretion system effector, Hcp YPO1891 PF00480 ROK family YPO1892 PF01408 Oxidoreductase family, NAD-binding Rossmann fold YPO1892 PF02894 Oxidoreductase family, C-terminal alpha/beta domain YPO1894 PF00528 Binding-protein-dependent transport system inner membrane component YPO1895 PF00528 Binding-protein-dependent transport system inner membrane component YPO1896 PF00005 ABC transporter YPO1896 PF08402 TOBE domain YPO1900 PF00665 Integrase core domain YPO1900 PF02796 Helix-turn-helix domain of resolvase YPO1901 PF01695 IstB-like ATP binding protein YPO1906 PF00593 TonB dependent receptor YPO1906 PF07715 TonB-dependent Receptor Plug Domain YPO1907 PF13193 AMP-binding enzyme C-terminal domain YPO1907 PF00501 AMP-binding enzyme YPO1908 PF00975 Thioesterase domain YPO1910 PF00698 Acyl transferase domain YPO1910 PF00668 Condensation domain YPO1910 PF16197 Ketoacyl-synthetase C-terminal extension YPO1910 PF00109 Beta-ketoacyl synthase, N-terminal domain YPO1910 PF02801 Beta-ketoacyl synthase, C-terminal domain YPO1910 PF00550 Phosphopantetheine attachment site YPO1911 PF00550 Phosphopantetheine attachment site YPO1911 PF00501 AMP-binding enzyme YPO1911 PF00668 Condensation domain YPO1911 PF08242 Methyltransferase domain YPO1913 PF04954 Siderophore-interacting protein YPO1913 PF08021 Siderophore-interacting FAD-binding domain YPO1913 PF00005 ABC transporter YPO1913 PF00664 ABC transporter transmembrane region YPO1914 PF00005 ABC transporter YPO1914 PF00664 ABC transporter transmembrane region YPO1915 PF07690 Major Facilitator Superfamily YPO1916 PF00425 chorismate binding enzyme YPO1917 PF00589 Phage integrase family YPO1917 PF13356 Arm DNA-binding domain YPO1918 PF02753 Pili assembly chaperone PapD, C-terminal domain YPO1918 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain YPO1920 PF13953 PapC C-terminal domain YPO1920 PF13954 PapC N-terminal domain YPO1920 PF00577 Outer membrane usher protein YPO1921 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain YPO1921 PF02753 Pili assembly chaperone PapD, C-terminal domain YPO1925 PF00072 Response regulator receiver domain YPO1925 PF00196 Bacterial regulatory proteins, luxR family YPO1926 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain YPO1926 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain YPO1927 PF01575 MaoC like domain YPO1928 PF03328 HpcH/HpaI aldolase/citrate lyase family YPO1929 PF03466 LysR substrate binding domain YPO1929 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPO1933 PF04909 Amidohydrolase YPO1935 PF02508 Rnf-Nqr subunit, membrane protein YPO1936 PF00155 Aminotransferase class I and II YPO1937 PF00324 Amino acid permease YPO1938 PF08220 DeoR-like helix-turn-helix domain YPO1938 PF00455 DeoR C terminal sensor domain YPO1939 PF04960 Glutaminase YPO1941 PF03239 Iron permease FTR1 family YPO1942 PF10634 Fe2+ transport protein YPO1944 PF00005 ABC transporter YPO1944 PF12704 MacB-like periplasmic core domain YPO1944 PF02687 FtsX-like permease family YPO1946 PF12704 MacB-like periplasmic core domain YPO1946 PF02687 FtsX-like permease family YPO1946 PF00005 ABC transporter YPO1947 PF00578 AhpC/TSA family YPO1949 PF03848 Tellurite resistance protein TehB YPO1949 PF09313 Domain of unknown function (DUF1971) YPO1950 PF00557 Metallopeptidase family M24 YPO1952 PF01522 Polysaccharide deacetylase YPO1952 PF14883 Hypothetical glycosyl hydrolase family 13 YPO1953 PF00535 Glycosyl transferase family 2 YPO1954 PF13994 PgaD-like protein YPO1957 PF02562 PhoH-like protein YPO1958 PF01699 Sodium/calcium exchanger protein YPO1959 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPO1959 PF07730 Histidine kinase YPO1959 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term YPO1959 PF00672 HAMP domain YPO1960 PF00392 Bacterial regulatory proteins, gntR family YPO1960 PF00155 Aminotransferase class I and II YPO1962 PF00202 Aminotransferase class-III YPO1963 PF04958 Arginine N-succinyltransferase beta subunit YPO1964 PF00171 Aldehyde dehydrogenase family YPO1965 PF04996 Succinylarginine dihydrolase YPO1966 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family YPO1968 PF00665 Integrase core domain YPO1968 PF02796 Helix-turn-helix domain of resolvase YPO1969 PF01695 IstB-like ATP binding protein YPO1972 PF01979 Amidohydrolase family YPO1973 PF00392 Bacterial regulatory proteins, gntR family YPO1973 PF07702 UTRA domain YPO1974 PF01979 Amidohydrolase family YPO1975 PF05962 HutD YPO1979 PF01370 NAD dependent epimerase/dehydratase family YPO1988 PF00872 Transposase, Mutator family YPO1992 PF08242 Methyltransferase domain YPO2000 PF00512 His Kinase A (phospho-acceptor) domain YPO2000 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPO2000 PF00672 HAMP domain YPO2001 PF00486 Transcriptional regulatory protein, C terminal YPO2001 PF00072 Response regulator receiver domain YPO2002 PF02129 X-Pro dipeptidyl-peptidase (S15 family) YPO2010 PF06071 Protein of unknown function (DUF933) YPO2010 PF01926 50S ribosome-binding GTPase YPO2011 PF01195 Peptidyl-tRNA hydrolase YPO2012 PF10762 Protein of unknown function (DUF2583) YPO2013 PF14572 Phosphoribosyl synthetase-associated domain YPO2013 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase YPO2014 PF08544 GHMP kinases C terminal YPO2014 PF00288 GHMP kinases N terminal domain YPO2015 PF03550 Outer membrane lipoprotein LolB YPO2016 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain YPO2016 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain YPO2016 PF01488 Shikimate / quinate 5-dehydrogenase YPO2017 PF03462 PCRF domain YPO2017 PF00472 RF-1 domain YPO2018 PF13847 Methyltransferase domain YPO2018 PF17827 PrmC N-terminal domain YPO2019 PF04247 Invasion gene expression up-regulator, SirB YPO2020 PF13369 Transglutaminase-like superfamily YPO2021 PF00793 DAHP synthetase I family YPO2023 PF01797 Transposase IS200 like YPO2025 PF01695 IstB-like ATP binding protein YPO2026 PF02796 Helix-turn-helix domain of resolvase YPO2026 PF00665 Integrase core domain YPO2028 PF03009 Glycerophosphoryl diester phosphodiesterase family YPO2030 PF00528 Binding-protein-dependent transport system inner membrane component YPO2031 PF00528 Binding-protein-dependent transport system inner membrane component YPO2033 PF01797 Transposase IS200 like YPO2035 PF03009 Glycerophosphoryl diester phosphodiesterase family YPO2036 PF00480 ROK family YPO2036 PF01325 Iron dependent repressor, N-terminal DNA binding domain YPO2037 PF02811 PHP domain YPO2038 PF02613 Nitrate reductase delta subunit YPO2039 PF07273 Protein of unknown function (DUF1439) YPO2040 PF07690 Major Facilitator Superfamily YPO2041 PF13302 Acetyltransferase (GNAT) domain YPO2042 PF04337 Protein of unknown function, DUF480 YPO2043 PF03023 Lipid II flippase MurJ YPO2044 PF17287 POTRA domain YPO2044 PF08479 POTRA domain, ShlB-type YPO2044 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB YPO2045 PF05860 haemagglutination activity domain YPO2045 PF13332 Hemagglutinin repeat YPO2046 PF05746 DALR anticodon binding domain YPO2046 PF03485 Arginyl tRNA synthetase N terminal domain YPO2046 PF00750 tRNA synthetases class I (R) YPO2047 PF06185 YecM protein YPO2048 PF03932 CutC family YPO2049 PF08003 Protein of unknown function (DUF1698) YPO2050 PF13649 Methyltransferase domain YPO2051 PF01124 MAPEG family YPO2052 PF01904 Protein of unknown function DUF72 YPO2053 PF01336 OB-fold nucleic acid binding domain YPO2053 PF02938 GAD domain YPO2053 PF00152 tRNA synthetases class II (D, K and N) YPO2054 PF00293 NUDIX domain YPO2055 PF01709 Transcriptional regulator YPO2056 PF02075 Crossover junction endodeoxyribonuclease RuvC YPO2057 PF07499 RuvA, C-terminal domain YPO2057 PF01330 RuvA N terminal domain YPO2058 PF17864 RuvB AAA lid domain YPO2058 PF05491 RuvB C-terminal winged helix domain YPO2058 PF05496 Holliday junction DNA helicase RuvB P-loop domain YPO2059 PF00950 ABC 3 transport family YPO2060 PF00005 ABC transporter YPO2061 PF01297 Zinc-uptake complex component A periplasmic YPO2062 PF01551 Peptidase family M23 YPO2062 PF01476 LysM domain YPO2062 PF08525 Opacity-associated protein A N-terminal motif YPO2063 PF03279 Bacterial lipid A biosynthesis acyltransferase YPO2064 PF02887 Pyruvate kinase, alpha/beta domain YPO2064 PF00224 Pyruvate kinase, barrel domain YPO2065 PF01418 Helix-turn-helix domain, rpiR family YPO2065 PF01380 SIS domain YPO2066 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain YPO2066 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain YPO2067 PF01081 KDPG and KHG aldolase YPO2068 PF00893 Small Multidrug Resistance protein YPO2069 PF00893 Small Multidrug Resistance protein YPO2070 PF01042 Endoribonuclease L-PSP YPO2071 PF04851 Type III restriction enzyme, res subunit YPO2071 PF13307 Helicase C-terminal domain YPO2072 PF00814 Glycoprotease family YPO2073 PF03843 Outer membrane lipoprotein Slp family YPO2074 PF13193 AMP-binding enzyme C-terminal domain YPO2074 PF00501 AMP-binding enzyme YPO2075 PF01612 3'-5' exonuclease YPO2075 PF00570 HRDC domain YPO2076 PF03776 Septum formation topological specificity factor MinE YPO2077 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain YPO2078 PF05209 Septum formation inhibitor MinC, N-terminal domain YPO2078 PF03775 Septum formation inhibitor MinC, C-terminal domain YPO2080 PF05166 YcgL domain YPO2081 PF13406 Transglycosylase SLT domain YPO2082 PF01557 Fumarylacetoacetate (FAA) hydrolase family YPO2083 PF03692 Putative zinc- or iron-chelating domain YPO2085 PF02796 Helix-turn-helix domain of resolvase YPO2085 PF00665 Integrase core domain YPO2086 PF01695 IstB-like ATP binding protein YPO2089 PF05772 NinB protein YPO2091 PF06530 Phage antitermination protein Q YPO2104 PF00872 Transposase, Mutator family YPO2121 PF01797 Transposase IS200 like YPO2134 PF02413 Caudovirales tail fibre assembly protein, lambda gpK YPO2136 PF00872 Transposase, Mutator family YPO2138 PF00266 Aminotransferase class-V YPO2141 PF02600 Disulfide bond formation protein DsbB YPO2142 PF06450 Bacterial Na+/H+ antiporter B (NhaB) YPO2144 PF00392 Bacterial regulatory proteins, gntR family YPO2144 PF07840 FadR C-terminal domain YPO2145 PF04293 SpoVR like protein YPO2147 PF01266 FAD dependent oxidoreductase YPO2148 PF07690 Major Facilitator Superfamily YPO2149 PF02678 Pirin YPO2149 PF05726 Pirin C-terminal cupin domain YPO2150 PF03466 LysR substrate binding domain YPO2150 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPO2152 PF04285 Protein of unknown function (DUF444) YPO2153 PF06798 PrkA serine protein kinase C-terminal domain YPO2153 PF08298 PrkA AAA domain YPO2155 PF06629 MltA-interacting protein MipA YPO2156 PF01263 Aldose 1-epimerase YPO2157 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain YPO2157 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain YPO2158 PF01641 SelR domain YPO2159 PF07023 Protein of unknown function (DUF1315) YPO2160 PF00857 Isochorismatase family YPO2161 PF17763 Glutaminase/Asparaginase C-terminal domain YPO2161 PF00710 Asparaginase, N-terminal YPO2162 PF01343 Peptidase family S49 YPO2163 PF00881 Nitroreductase family YPO2164 PF02769 AIR synthase related protein, C-terminal domain YPO2164 PF00586 AIR synthase related protein, N-terminal domain YPO2165 PF01131 DNA topoisomerase YPO2165 PF01751 Toprim domain YPO2166 PF07383 Protein of unknown function (DUF1496) YPO2167 PF00293 NUDIX domain YPO2168 PF03372 Endonuclease/Exonuclease/phosphatase family YPO2169 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPO2169 PF03466 LysR substrate binding domain YPO2170 PF00872 Transposase, Mutator family YPO2172 PF02810 SEC-C motif YPO2173 PF00072 Response regulator receiver domain YPO2174 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain YPO2174 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain YPO2174 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain YPO2175 PF00816 H-NS histone family YPO2176 PF00265 Thymidine kinase YPO2177 PF01695 IstB-like ATP binding protein YPO2178 PF02796 Helix-turn-helix domain of resolvase YPO2178 PF00665 Integrase core domain YPO2180 PF00465 Iron-containing alcohol dehydrogenase YPO2180 PF00171 Aldehyde dehydrogenase family YPO2181 PF01914 MarC family integral membrane protein YPO2182 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle YPO2183 PF00528 Binding-protein-dependent transport system inner membrane component YPO2184 PF12911 N-terminal TM domain of oligopeptide transport permease C YPO2184 PF00528 Binding-protein-dependent transport system inner membrane component YPO2185 PF08352 Oligopeptide/dipeptide transporter, C-terminal region YPO2185 PF00005 ABC transporter YPO2186 PF08352 Oligopeptide/dipeptide transporter, C-terminal region YPO2186 PF00005 ABC transporter YPO2187 PF04269 Protein of unknown function, DUF440 YPO2188 PF13396 Phospholipase_D-nuclease N-terminal YPO2188 PF13091 PLD-like domain YPO2190 PF13505 Outer membrane protein beta-barrel domain YPO2192 PF03795 YCII-related domain YPO2193 PF03544 Gram-negative bacterial TonB protein C-terminal YPO2194 PF00872 Transposase, Mutator family YPO2195 PF03061 Thioesterase superfamily YPO2196 PF04279 Intracellular septation protein A YPO2201 PF03922 OmpW family YPO2203 PF00290 Tryptophan synthase alpha chain YPO2204 PF00291 Pyridoxal-phosphate dependent enzyme YPO2205 PF00218 Indole-3-glycerol phosphate synthase YPO2205 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase YPO2206 PF00591 Glycosyl transferase family, a/b domain YPO2206 PF02885 Glycosyl transferase family, helical bundle domain YPO2207 PF00117 Glutamine amidotransferase class-I YPO2208 PF00425 chorismate binding enzyme YPO2208 PF04715 Anthranilate synthase component I, N terminal region YPO2211 PF02811 PHP domain YPO2212 PF01300 Telomere recombination YPO2213 PF01479 S4 domain YPO2213 PF00849 RNA pseudouridylate synthase YPO2214 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP YPO2215 PF00106 short chain dehydrogenase YPO2216 PF01343 Peptidase family S49 YPO2216 PF08496 Peptidase family S49 N-terminal YPO2217 PF10692 Protein of unknown function (DUF2498) YPO2218 PF08272 Topoisomerase I zinc-ribbon-like YPO2218 PF01396 Topoisomerase DNA binding C4 zinc finger YPO2218 PF01131 DNA topoisomerase YPO2218 PF01751 Toprim domain YPO2219 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPO2219 PF03466 LysR substrate binding domain YPO2221 PF00330 Aconitase family (aconitate hydratase) YPO2221 PF00694 Aconitase C-terminal domain YPO2222 PF00925 GTP cyclohydrolase II YPO2223 PF01569 PAP2 superfamily YPO2224 PF06305 Lipopolysaccharide assembly protein A domain YPO2225 PF18073 Rubredoxin metal binding domain YPO2227 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family YPO2228 PF01253 Translation initiation factor SUI1 YPO2229 PF05433 Glycine zipper 2TM domain YPO2230 PF00596 Class II Aldolase and Adducin N-terminal domain YPO2232 PF00923 Transaldolase/Fructose-6-phosphate aldolase YPO2233 PF04328 Selenoprotein, putative YPO2234 PF02554 Carbon starvation protein CstA YPO2234 PF13722 5TM C-terminal transporter carbon starvation CstA YPO2235 PF08206 Ribonuclease B OB domain YPO2235 PF00773 RNB domain YPO2235 PF17876 Cold shock domain YPO2235 PF00575 S1 RNA binding domain YPO2237 PF07690 Major Facilitator Superfamily YPO2238 PF01370 NAD dependent epimerase/dehydratase family YPO2239 PF00730 HhH-GPD superfamily base excision DNA repair protein YPO2239 PF00633 Helix-hairpin-helix motif YPO2239 PF10576 Iron-sulfur binding domain of endonuclease III YPO2240 PF02508 Rnf-Nqr subunit, membrane protein YPO2241 PF04205 FMN-binding domain YPO2242 PF03116 NQR2, RnfD, RnfE family YPO2243 PF12833 Helix-turn-helix domain YPO2243 PF06445 GyrI-like small molecule binding domain YPO2244 PF13375 RnfC Barrel sandwich hybrid domain YPO2244 PF13237 4Fe-4S dicluster domain YPO2244 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit YPO2244 PF10531 SLBB domain YPO2245 PF04060 Putative Fe-S cluster YPO2246 PF02508 Rnf-Nqr subunit, membrane protein YPO2247 PF10754 Protein of unknown function (DUF2569) YPO2252 PF00664 ABC transporter transmembrane region YPO2252 PF03412 Peptidase C39 family YPO2252 PF00005 ABC transporter YPO2253 PF02610 L-arabinose isomerase YPO2253 PF11762 L-arabinose isomerase C-terminal domain YPO2254 PF02782 FGGY family of carbohydrate kinases, C-terminal domain YPO2255 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family YPO2256 PF00005 ABC transporter YPO2257 PF02653 Branched-chain amino acid transport system / permease component YPO2258 PF02311 AraC-like ligand binding domain YPO2258 PF12833 Helix-turn-helix domain YPO2259 PF01408 Oxidoreductase family, NAD-binding Rossmann fold YPO2259 PF02894 Oxidoreductase family, C-terminal alpha/beta domain YPO2260 PF13593 SBF-like CPA transporter family (DUF4137) YPO2262 PF06097 Bacterial protein of unknown function (DUF945) YPO2263 PF01238 Phosphomannose isomerase type I YPO2264 PF10415 Fumarase C C-terminus YPO2264 PF00206 Lyase YPO2265 PF05472 DNA replication terminus site-binding protein (Ter protein) YPO2266 PF07690 Major Facilitator Superfamily YPO2268 PF00480 ROK family YPO2270 PF00654 Voltage gated chloride channel YPO2279 PF05707 Zonular occludens toxin (Zot) YPO2283 PF00356 Bacterial regulatory proteins, lacI family YPO2285 PF13407 Periplasmic binding protein domain YPO2286 PF09084 NMT1/THI5 like YPO2287 PF00528 Binding-protein-dependent transport system inner membrane component YPO2288 PF01048 Phosphorylase superfamily YPO2288 PF10423 Bacterial AMP nucleoside phosphorylase N-terminus YPO2293 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain YPO2293 PF00205 Thiamine pyrophosphate enzyme, central domain YPO2293 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain YPO2294 PF01842 ACT domain YPO2295 PF13419 Haloacid dehalogenase-like hydrolase YPO2298 PF00245 Alkaline phosphatase YPO2299 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain YPO2299 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain YPO2300 PF00027 Cyclic nucleotide-binding domain YPO2300 PF13545 Crp-like helix-turn-helix domain YPO2301 PF00582 Universal stress protein family YPO2302 PF02233 NAD(P) transhydrogenase beta subunit YPO2303 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch YPO2303 PF05222 Alanine dehydrogenase/PNT, N-terminal domain YPO2303 PF01262 Alanine dehydrogenase/PNT, C-terminal domain YPO2305 PF07338 Protein of unknown function (DUF1471) YPO2306 PF13520 Amino acid permease YPO2308 PF00072 Response regulator receiver domain YPO2308 PF00486 Transcriptional regulatory protein, C terminal YPO2309 PF00672 HAMP domain YPO2309 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPO2309 PF00512 His Kinase A (phospho-acceptor) domain YPO2310 PF02074 Carboxypeptidase Taq (M32) metallopeptidase YPO2311 PF01797 Transposase IS200 like YPO2312 PF14431 YwqJ-like deaminase YPO2312 PF18807 Tripartite Tc toxins repeat YPO2315 PF04264 YceI-like domain YPO2316 PF01292 Prokaryotic cytochrome b561 YPO2319 PF00089 Trypsin YPO2322 PF04408 Helicase associated domain (HA2) YPO2322 PF00271 Helicase conserved C-terminal domain YPO2322 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold YPO2322 PF11898 Domain of unknown function (DUF3418) YPO2322 PF00270 DEAD/DEAH box helicase YPO2323 PF02525 Flavodoxin-like fold YPO2324 PF04198 Putative sugar-binding domain YPO2324 PF00325 Bacterial regulatory proteins, crp family YPO2325 PF01232 Mannitol dehydrogenase Rossmann domain YPO2325 PF08125 Mannitol dehydrogenase C-terminal domain YPO2326 PF07027 Protein of unknown function (DUF1318) YPO2327 PF13617 YnbE-like lipoprotein YPO2328 PF11739 Dicarboxylate transport YPO2329 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain YPO2329 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain YPO2330 PF03724 META domain YPO2331 PF03891 Domain of unknown function (DUF333) YPO2332 PF02308 MgtC family YPO2333 PF00893 Small Multidrug Resistance protein YPO2334 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain YPO2334 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg YPO2334 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase YPO2334 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II YPO2334 PF10371 Domain of unknown function YPO2335 PF01171 PP-loop family YPO2336 PF07859 alpha/beta hydrolase fold YPO2336 PF13472 GDSL-like Lipase/Acylhydrolase family YPO2338 PF01544 CorA-like Mg2+ transporter protein YPO2339 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle YPO2340 PF00246 Zinc carboxypeptidase YPO2341 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain YPO2341 PF13378 Enolase C-terminal domain-like YPO2342 PF08534 Redoxin YPO2343 PF01797 Transposase IS200 like YPO2344 PF00158 Sigma-54 interaction domain YPO2344 PF18024 Helix-turn-helix domain YPO2347 PF05128 Domain of unknown function (DUF697) YPO2348 PF04317 YcjX-like family, DUF463 YPO2349 PF04024 PspC domain YPO2350 PF06667 Phage shock protein B YPO2351 PF04012 PspA/IM30 family YPO2352 PF02954 Bacterial regulatory protein, Fis family YPO2352 PF00158 Sigma-54 interaction domain YPO2353 PF01797 Transposase IS200 like YPO2355 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle YPO2356 PF00528 Binding-protein-dependent transport system inner membrane component YPO2357 PF12911 N-terminal TM domain of oligopeptide transport permease C YPO2357 PF00528 Binding-protein-dependent transport system inner membrane component YPO2358 PF08352 Oligopeptide/dipeptide transporter, C-terminal region YPO2358 PF00005 ABC transporter YPO2359 PF00005 ABC transporter YPO2361 PF00854 POT family YPO2362 PF04893 Yip1 domain YPO2363 PF11656 YjbD family (DUF3811) YPO2364 PF01695 IstB-like ATP binding protein YPO2365 PF00665 Integrase core domain YPO2365 PF02796 Helix-turn-helix domain of resolvase YPO2367 PF00043 Glutathione S-transferase, C-terminal domain YPO2367 PF02798 Glutathione S-transferase, N-terminal domain YPO2368 PF08543 Phosphomethylpyrimidine kinase YPO2369 PF00579 tRNA synthetases class I (W and Y) YPO2369 PF01479 S4 domain YPO2370 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region YPO2370 PF01243 Pyridoxamine 5'-phosphate oxidase YPO2371 PF09864 Membrane-bound lysozyme-inhibitor of c-type lysozyme YPO2372 PF03702 Anhydro-N-acetylmuramic acid kinase YPO2373 PF05433 Glycine zipper 2TM domain YPO2374 PF01047 MarR family YPO2375 PF00248 Aldo/keto reductase family YPO2376 PF06945 Protein of unknown function (DUF1289) YPO2377 PF00884 Sulfatase YPO2377 PF08019 Phosphoethanolamine transferase EptA/EptB YPO2378 PF16925 Tetracyclin repressor-like, C-terminal domain YPO2378 PF00440 Bacterial regulatory proteins, tetR family YPO2379 PF00724 NADH:flavin oxidoreductase / NADH oxidase family YPO2380 PF14431 YwqJ-like deaminase YPO2380 PF18807 Tripartite Tc toxins repeat YPO2381 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily YPO2382 PF00929 Exonuclease YPO2383 PF00462 Glutaredoxin YPO2385 PF00877 NlpC/P60 family YPO2386 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain YPO2386 PF02777 Iron/manganese superoxide dismutases, C-terminal domain YPO2387 PF00356 Bacterial regulatory proteins, lacI family YPO2388 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPO2388 PF03466 LysR substrate binding domain YPO2389 PF07690 Major Facilitator Superfamily YPO2391 PF00677 Lumazine binding domain YPO2392 PF01554 MatE YPO2393 PF00224 Pyruvate kinase, barrel domain YPO2393 PF02887 Pyruvate kinase, alpha/beta domain YPO2394 PF04728 Lipoprotein leucine-zipper YPO2395 PF01797 Transposase IS200 like YPO2396 PF00665 Integrase core domain YPO2396 PF02796 Helix-turn-helix domain of resolvase YPO2397 PF01695 IstB-like ATP binding protein YPO2399 PF02657 Fe-S metabolism associated domain YPO2400 PF00266 Aminotransferase class-V YPO2401 PF01458 Uncharacterized protein family (UPF0051) YPO2402 PF00005 ABC transporter YPO2403 PF01458 Uncharacterized protein family (UPF0051) YPO2404 PF01521 Iron-sulphur cluster biosynthesis YPO2406 PF03061 Thioesterase superfamily YPO2407 PF02913 FAD linked oxidases, C-terminal domain YPO2407 PF13183 4Fe-4S dicluster domain YPO2407 PF01565 FAD binding domain YPO2408 PF01594 AI-2E family transporter YPO2409 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain YPO2409 PF00391 PEP-utilising enzyme, mobile domain YPO2409 PF02896 PEP-utilising enzyme, TIM barrel domain YPO2410 PF03618 Kinase/pyrophosphorylase YPO2411 PF00793 DAHP synthetase I family YPO2414 PF03099 Biotin/lipoate A/B protein ligase family YPO2414 PF10437 Bacterial lipoate protein ligase C-terminus YPO2415 PF00877 NlpC/P60 family YPO2417 PF00892 EamA-like transporter family YPO2418 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase YPO2419 PF01522 Polysaccharide deacetylase YPO2420 PF02911 Formyl transferase, C-terminal domain YPO2420 PF01370 NAD dependent epimerase/dehydratase family YPO2420 PF00551 Formyl transferase YPO2421 PF00535 Glycosyl transferase family 2 YPO2422 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family YPO2423 PF00005 ABC transporter YPO2424 PF00255 Glutathione peroxidase YPO2425 PF01032 FecCD transport family YPO2427 PF00216 Bacterial DNA-binding protein YPO2428 PF01588 Putative tRNA binding domain YPO2428 PF03147 Ferredoxin-fold anticodon binding domain YPO2428 PF03483 B3/4 domain YPO2428 PF03484 tRNA synthetase B5 domain YPO2428 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain YPO2429 PF01409 tRNA synthetases class II core domain (F) YPO2429 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain YPO2430 PF00453 Ribosomal protein L20 YPO2431 PF01632 Ribosomal protein L35 YPO2432 PF05198 Translation initiation factor IF-3, N-terminal domain YPO2432 PF00707 Translation initiation factor IF-3, C-terminal domain YPO2433 PF02824 TGS domain YPO2433 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain YPO2433 PF03129 Anticodon binding domain YPO2433 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) YPO2434 PF13619 KTSC domain YPO2437 PF01914 MarC family integral membrane protein YPO2438 PF01464 Transglycosylase SLT domain YPO2439 PF01297 Zinc-uptake complex component A periplasmic YPO2440 PF00005 ABC transporter YPO2441 PF00950 ABC 3 transport family YPO2442 PF00950 ABC 3 transport family YPO2445 PF14002 YniB-like protein YPO2446 PF13419 Haloacid dehalogenase-like hydrolase YPO2447 PF00872 Transposase, Mutator family YPO2448 PF01266 FAD dependent oxidoreductase YPO2449 PF00196 Bacterial regulatory proteins, luxR family YPO2450 PF01594 AI-2E family transporter YPO2456 PF00765 Autoinducer synthase YPO2457 PF00196 Bacterial regulatory proteins, luxR family YPO2457 PF03472 Autoinducer binding domain YPO2458 PF03466 LysR substrate binding domain YPO2458 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPO2459 PF00083 Sugar (and other) transporter YPO2461 PF00248 Aldo/keto reductase family YPO2462 PF09618 CRISPR-associated protein (Cas_Csy4) YPO2463 PF09615 CRISPR-associated protein (Cas_Csy3) YPO2464 PF09614 CRISPR-associated protein (Cas_Csy2) YPO2465 PF09611 CRISPR-associated protein (Cas_Csy1) YPO2468 PF01867 CRISPR associated protein Cas1 YPO2470 PF00924 Mechanosensitive ion channel YPO2474 PF04041 beta-1,4-mannooligosaccharide phosphorylase YPO2475 PF00528 Binding-protein-dependent transport system inner membrane component YPO2476 PF00528 Binding-protein-dependent transport system inner membrane component YPO2478 PF00356 Bacterial regulatory proteins, lacI family YPO2479 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain YPO2479 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III YPO2479 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II YPO2479 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I YPO2480 PF17912 MalK OB fold domain YPO2480 PF00005 ABC transporter YPO2482 PF05594 Haemagluttinin repeat YPO2482 PF04829 Pre-toxin domain with VENN motif YPO2482 PF13332 Hemagglutinin repeat YPO2482 PF05860 haemagglutination activity domain YPO2482 PF15526 Novel toxin 21 YPO2486 PF13018 Extended Signal Peptide of Type V secretion system YPO2486 PF13332 Hemagglutinin repeat YPO2486 PF05860 haemagglutination activity domain YPO2486 PF04829 Pre-toxin domain with VENN motif YPO2490 PF13018 Extended Signal Peptide of Type V secretion system YPO2490 PF13332 Hemagglutinin repeat YPO2490 PF05860 haemagglutination activity domain YPO2490 PF04829 Pre-toxin domain with VENN motif YPO2491 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB YPO2491 PF17287 POTRA domain YPO2491 PF08479 POTRA domain, ShlB-type YPO2492 PF00111 2Fe-2S iron-sulfur cluster binding domain YPO2492 PF00175 Oxidoreductase NAD-binding domain YPO2492 PF00970 Oxidoreductase FAD-binding domain YPO2493 PF00848 Ring hydroxylating alpha subunit (catalytic domain) YPO2493 PF00355 Rieske [2Fe-2S] domain YPO2494 PF02028 BCCT, betaine/carnitine/choline family transporter YPO2496 PF00180 Isocitrate/isopropylmalate dehydrogenase YPO2497 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPO2497 PF03466 LysR substrate binding domain YPO2498 PF00356 Bacterial regulatory proteins, lacI family YPO2499 PF02653 Branched-chain amino acid transport system / permease component YPO2500 PF00005 ABC transporter YPO2501 PF13407 Periplasmic binding protein domain YPO2502 PF00107 Zinc-binding dehydrogenase YPO2502 PF08240 Alcohol dehydrogenase GroES-like domain YPO2506 PF13505 Outer membrane protein beta-barrel domain YPO2507 PF00892 EamA-like transporter family YPO2509 PF13649 Methyltransferase domain YPO2510 PF00210 Ferritin-like domain YPO2512 PF00497 Bacterial extracellular solute-binding proteins, family 3 YPO2513 PF00528 Binding-protein-dependent transport system inner membrane component YPO2514 PF00005 ABC transporter YPO2515 PF13426 PAS domain YPO2515 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain YPO2515 PF08447 PAS fold YPO2516 PF02796 Helix-turn-helix domain of resolvase YPO2516 PF00665 Integrase core domain YPO2517 PF01695 IstB-like ATP binding protein YPO2519 PF05971 RNA methyltransferase YPO2521 PF07338 Protein of unknown function (DUF1471) YPO2522 PF02885 Glycosyl transferase family, helical bundle domain YPO2523 PF13193 AMP-binding enzyme C-terminal domain YPO2523 PF00501 AMP-binding enzyme YPO2524 PF13378 Enolase C-terminal domain-like YPO2525 PF00378 Enoyl-CoA hydratase/isomerase YPO2526 PF12697 Alpha/beta hydrolase family YPO2527 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain YPO2527 PF16582 Middle domain of thiamine pyrophosphate YPO2527 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain YPO2528 PF00425 chorismate binding enzyme YPO2531 PF05957 Bacterial protein of unknown function (DUF883) YPO2533 PF00920 Dehydratase family YPO2534 PF03928 Haem-degrading YPO2535 PF07690 Major Facilitator Superfamily YPO2536 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain YPO2536 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain YPO2537 PF00356 Bacterial regulatory proteins, lacI family YPO2539 PF00106 short chain dehydrogenase YPO2540 PF01202 Shikimate kinase YPO2541 PF04074 YhcH/YjgK/YiaL YPO2543 PF00361 Proton-conducting membrane transporter YPO2544 PF00361 Proton-conducting membrane transporter YPO2545 PF00361 Proton-conducting membrane transporter YPO2545 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus YPO2546 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L YPO2547 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 YPO2548 PF12838 4Fe-4S dicluster domain YPO2549 PF00146 NADH dehydrogenase YPO2550 PF04879 Molybdopterin oxidoreductase Fe4S4 domain YPO2550 PF00384 Molybdopterin oxidoreductase YPO2550 PF01568 Molydopterin dinucleotide binding domain YPO2550 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region YPO2551 PF10531 SLBB domain YPO2551 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit YPO2551 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region YPO2553 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit YPO2553 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit YPO2554 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit YPO2555 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 YPO2556 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPO2556 PF03466 LysR substrate binding domain YPO2558 PF00155 Aminotransferase class I and II YPO2561 PF03600 Citrate transporter YPO2561 PF02080 TrkA-C domain YPO2562 PF13419 Haloacid dehalogenase-like hydrolase YPO2563 PF03887 YfbU domain YPO2564 PF04217 Protein of unknown function, DUF412 YPO2566 PF00871 Acetokinase family YPO2567 PF01515 Phosphate acetyl/butaryl transferase YPO2567 PF07085 DRTGG domain YPO2568 PF00356 Bacterial regulatory proteins, lacI family YPO2568 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family YPO2569 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 YPO2571 PF00872 Transposase, Mutator family YPO2573 PF00207 Alpha-2-macroglobulin family YPO2573 PF07703 Alpha-2-macroglobulin bait region domain YPO2573 PF17973 Bacterial Alpha-2-macroglobulin MG10 domain YPO2573 PF17972 Bacterial Alpha-2-macroglobulin MG5 domain YPO2573 PF17962 Bacterial macroglobulin domain 6 YPO2573 PF01835 MG2 domain YPO2573 PF11974 Bacterial alpha-2-macroglobulin MG3 domain YPO2577 PF00171 Aldehyde dehydrogenase family YPO2578 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain YPO2578 PF00205 Thiamine pyrophosphate enzyme, central domain YPO2578 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain YPO2581 PF13407 Periplasmic binding protein domain YPO2582 PF00005 ABC transporter YPO2583 PF02653 Branched-chain amino acid transport system / permease component YPO2584 PF01408 Oxidoreductase family, NAD-binding Rossmann fold YPO2584 PF02894 Oxidoreductase family, C-terminal alpha/beta domain YPO2585 PF00294 pfkB family carbohydrate kinase YPO2586 PF01261 Xylose isomerase-like TIM barrel YPO2587 PF04962 KduI/IolB family YPO2588 PF00005 ABC transporter YPO2588 PF00664 ABC transporter transmembrane region YPO2593 PF00196 Bacterial regulatory proteins, luxR family YPO2595 PF00313 'Cold-shock' DNA-binding domain YPO2596 PF02537 CrcB-like protein, Camphor Resistance (CrcB) YPO2597 PF02416 mttA/Hcf106 family YPO2598 PF04055 Radical SAM superfamily YPO2598 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family YPO2599 PF03099 Biotin/lipoate A/B protein ligase family YPO2600 PF04359 Protein of unknown function (DUF493) YPO2601 PF00768 D-alanyl-D-alanine carboxypeptidase YPO2601 PF07943 Penicillin-binding protein 5, C-terminal domain YPO2602 PF03330 Lytic transglycolase YPO2602 PF05036 Sporulation related domain YPO2603 PF01098 Cell cycle protein YPO2604 PF03717 Penicillin-binding Protein dimerisation domain YPO2604 PF00905 Penicillin binding protein transpeptidase domain YPO2605 PF02590 Predicted SPOUT methyltransferase YPO2607 PF01467 Cytidylyltransferase-like YPO2608 PF06144 DNA polymerase III, delta subunit YPO2608 PF14840 Processivity clamp loader gamma complex DNA pol III C-term YPO2609 PF04390 Lipopolysaccharide-assembly YPO2610 PF08264 Anticodon-binding domain of tRNA YPO2610 PF13603 Leucyl-tRNA synthetase, Domain 2 YPO2610 PF00133 tRNA synthetases class I (I, L, M and V) YPO2611 PF07295 Zinc-ribbon containing domain YPO2612 PF00005 ABC transporter YPO2613 PF00528 Binding-protein-dependent transport system inner membrane component YPO2614 PF00528 Binding-protein-dependent transport system inner membrane component YPO2615 PF00497 Bacterial extracellular solute-binding proteins, family 3 YPO2616 PF00795 Carbon-nitrogen hydrolase YPO2617 PF03471 Transporter associated domain YPO2617 PF00571 CBS domain YPO2618 PF02130 Uncharacterized protein family UPF0054 YPO2619 PF02562 PhoH-like protein YPO2620 PF04055 Radical SAM superfamily YPO2620 PF01938 TRAM domain YPO2620 PF00919 Uncharacterized protein family UPF0004 YPO2621 PF01494 FAD binding domain YPO2623 PF13537 Glutamine amidotransferase domain YPO2623 PF00733 Asparagine synthase YPO2624 PF13344 Haloacid dehalogenase-like hydrolase YPO2625 PF00480 ROK family YPO2625 PF01047 MarR family YPO2626 PF01979 Amidohydrolase family YPO2627 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase YPO2628 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 YPO2628 PF00367 phosphotransferase system, EIIB YPO2628 PF02378 Phosphotransferase system, EIIC YPO2629 PF01797 Transposase IS200 like YPO2630 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain YPO2630 PF00749 tRNA synthetases class I (E and Q), catalytic domain YPO2631 PF03573 outer membrane porin, OprD family YPO2634 PF01475 Ferric uptake regulator family YPO2635 PF00258 Flavodoxin YPO2637 PF01402 Ribbon-helix-helix protein, copG family YPO2638 PF12697 Alpha/beta hydrolase family YPO2639 PF13356 Arm DNA-binding domain YPO2639 PF00589 Phage integrase family YPO2640 PF01527 Transposase YPO2641 PF13356 Arm DNA-binding domain YPO2641 PF00589 Phage integrase family YPO2642 PF01695 IstB-like ATP binding protein YPO2643 PF02796 Helix-turn-helix domain of resolvase YPO2643 PF00665 Integrase core domain YPO2645 PF04069 Substrate binding domain of ABC-type glycine betaine transport system YPO2646 PF00528 Binding-protein-dependent transport system inner membrane component YPO2647 PF00571 CBS domain YPO2647 PF00005 ABC transporter YPO2648 PF00268 Ribonucleotide reductase, small chain YPO2649 PF02867 Ribonucleotide reductase, barrel domain YPO2649 PF08343 Ribonucleotide reductase N-terminal YPO2649 PF00317 Ribonucleotide reductase, all-alpha domain YPO2650 PF07972 NrdI Flavodoxin like YPO2652 PF06392 Acid shock protein repeat YPO2653 PF09400 Protein of unknown function (DUF2002) YPO2654 PF06711 Protein of unknown function (DUF1198) YPO2656 PF00872 Transposase, Mutator family YPO2659 PF00313 'Cold-shock' DNA-binding domain YPO2660 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle YPO2661 PF00528 Binding-protein-dependent transport system inner membrane component YPO2662 PF00528 Binding-protein-dependent transport system inner membrane component YPO2662 PF12911 N-terminal TM domain of oligopeptide transport permease C YPO2663 PF00005 ABC transporter YPO2664 PF00005 ABC transporter YPO2665 PF00547 Urease, gamma subunit YPO2666 PF00699 Urease beta subunit YPO2667 PF01979 Amidohydrolase family YPO2667 PF00449 Urease alpha-subunit, N-terminal domain YPO2668 PF02814 UreE urease accessory protein, N-terminal domain YPO2668 PF05194 UreE urease accessory protein, C-terminal domain YPO2669 PF01730 UreF YPO2670 PF02492 CobW/HypB/UreG, nucleotide-binding domain YPO2672 PF03253 Urea transporter YPO2673 PF03824 High-affinity nickel-transport protein YPO2674 PF06411 HdeA/HdeB family YPO2675 PF07885 Ion channel YPO2675 PF02254 TrkA-N domain YPO2676 PF02537 CrcB-like protein, Camphor Resistance (CrcB) YPO2677 PF02537 CrcB-like protein, Camphor Resistance (CrcB) YPO2678 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit YPO2679 PF02378 Phosphotransferase system, EIIC YPO2680 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit YPO2681 PF12833 Helix-turn-helix domain YPO2681 PF07883 Cupin domain YPO2682 PF04794 YdjC-like protein YPO2685 PF17206 SeqA protein N-terminal domain YPO2685 PF03925 SeqA protein C-terminal domain YPO2686 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III YPO2686 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II YPO2686 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I YPO2686 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain YPO2688 PF00486 Transcriptional regulatory protein, C terminal YPO2688 PF00072 Response regulator receiver domain YPO2689 PF02702 Osmosensitive K+ channel His kinase sensor domain YPO2689 PF00512 His Kinase A (phospho-acceptor) domain YPO2689 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPO2689 PF13492 GAF domain YPO2689 PF13493 Domain of unknown function (DUF4118) YPO2690 PF02669 K+-transporting ATPase, c chain YPO2692 PF03814 Potassium-transporting ATPase A subunit YPO2693 PF10725 Protein of unknown function (DUF2517) YPO2694 PF08349 Protein of unknown function (DUF1722) YPO2695 PF03441 FAD binding domain of DNA photolyase YPO2695 PF00875 DNA photolyase YPO2696 PF02112 cAMP phosphodiesterases class-II YPO2697 PF01784 NIF3 (NGG1p interacting factor 3) YPO2699 PF02626 Carboxyltransferase domain, subdomain A and B YPO2700 PF03746 LamB/YcsF family YPO2703 PF01470 Pyroglutamyl peptidase YPO2704 PF03167 Uracil DNA glycosylase superfamily YPO2705 PF01228 Glycine radical YPO2707 PF12796 Ankyrin repeats (3 copies) YPO2708 PF00270 DEAD/DEAH box helicase YPO2708 PF00271 Helicase conserved C-terminal domain YPO2709 PF05175 Methyltransferase small domain YPO2710 PF02910 Fumarate reductase flavoprotein C-term YPO2710 PF00890 FAD binding domain YPO2711 PF04542 Sigma-70 region 2 YPO2711 PF08281 Sigma-70, region 4 YPO2712 PF03872 Anti sigma-E protein RseA, N-terminal domain YPO2712 PF03873 Anti sigma-E protein RseA, C-terminal domain YPO2713 PF17188 MucB/RseB C-terminal domain YPO2713 PF03888 MucB/RseB N-terminal domain YPO2715 PF00679 Elongation factor G C-terminus YPO2715 PF06421 GTP-binding protein LepA C-terminus YPO2715 PF03144 Elongation factor Tu domain 2 YPO2715 PF00009 Elongation factor Tu GTP binding domain YPO2717 PF10502 Signal peptidase, peptidase S26 YPO2718 PF14622 Ribonuclease-III-like YPO2718 PF00035 Double-stranded RNA binding motif YPO2719 PF01926 50S ribosome-binding GTPase YPO2719 PF07650 KH domain YPO2720 PF02565 Recombination protein O C terminal YPO2720 PF11967 Recombination protein O N terminal YPO2721 PF02796 Helix-turn-helix domain of resolvase YPO2721 PF00665 Integrase core domain YPO2722 PF01695 IstB-like ATP binding protein YPO2725 PF04717 Type VI secretion system, phage-baseplate injector YPO2730 PF03831 PhnA domain YPO2730 PF08274 PhnA Zinc-Ribbon YPO2732 PF04011 LemA family YPO2734 PF00005 ABC transporter YPO2735 PF03379 CcmB protein YPO2736 PF01578 Cytochrome C assembly protein YPO2737 PF04995 Heme exporter protein D (CcmD) YPO2738 PF03100 CcmE YPO2739 PF01578 Cytochrome C assembly protein YPO2739 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal YPO2740 PF08534 Redoxin YPO2743 PF04333 MlaA lipoprotein YPO2744 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) YPO2745 PF04175 Protein of unknown function (DUF406) YPO2746 PF00108 Thiolase, N-terminal domain YPO2746 PF02803 Thiolase, C-terminal domain YPO2747 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain YPO2747 PF00378 Enoyl-CoA hydratase/isomerase YPO2747 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain YPO2748 PF00300 Histidine phosphatase superfamily (branch 1) YPO2749 PF01713 Smr domain YPO2750 PF05175 Methyltransferase small domain YPO2751 PF01264 Chorismate synthase YPO2752 PF03411 Penicillin-insensitive murein endopeptidase YPO2753 PF01925 Sulfite exporter TauE/SafE YPO2754 PF04315 Elongation factor P hydroxylase YPO2755 PF08891 YfcL protein YPO2756 PF05430 S-adenosyl-L-methionine-dependent methyltransferase YPO2756 PF01266 FAD dependent oxidoreductase YPO2757 PF02801 Beta-ketoacyl synthase, C-terminal domain YPO2757 PF00109 Beta-ketoacyl synthase, N-terminal domain YPO2758 PF01177 Asp/Glu/Hydantoin racemase YPO2759 PF00419 Fimbrial protein YPO2761 PF00892 EamA-like transporter family YPO2763 PF11890 Domain of unknown function (DUF3410) YPO2763 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain YPO2763 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain YPO2764 PF01797 Transposase IS200 like YPO2765 PF01118 Semialdehyde dehydrogenase, NAD binding domain YPO2765 PF02774 Semialdehyde dehydrogenase, dimerisation domain YPO2766 PF01416 tRNA pseudouridine synthase YPO2767 PF09335 SNARE associated Golgi protein YPO2768 PF17848 Acetyl-coA carboxylase zinc finger domain YPO2768 PF01039 Carboxyl transferase domain YPO2769 PF08245 Mur ligase middle domain YPO2769 PF02875 Mur ligase family, glutamate ligase domain YPO2770 PF05036 Sporulation related domain YPO2771 PF02674 Colicin V production protein YPO2772 PF00156 Phosphoribosyl transferase domain YPO2773 PF02441 Flavoprotein YPO2774 PF00497 Bacterial extracellular solute-binding proteins, family 3 YPO2775 PF00528 Binding-protein-dependent transport system inner membrane component YPO2776 PF00528 Binding-protein-dependent transport system inner membrane component YPO2777 PF00005 ABC transporter YPO2778 PF01370 NAD dependent epimerase/dehydratase family YPO2778 PF08338 Domain of unknown function (DUF1731) YPO2780 PF12850 Calcineurin-like phosphoesterase superfamily domain YPO2781 PF00293 NUDIX domain YPO2782 PF03611 PTS system sugar-specific permease component YPO2783 PF00872 Transposase, Mutator family YPO2785 PF13693 Winged helix-turn-helix DNA-binding YPO2793 PF05638 Type VI secretion system effector, Hcp YPO2796 PF03797 Autotransporter beta-domain YPO2796 PF13018 Extended Signal Peptide of Type V secretion system YPO2796 PF03212 Pertactin YPO2796 PF16168 Adhesin of bacterial autotransporter system, probable stalk YPO2798 PF08007 Cupin superfamily protein YPO2799 PF00872 Transposase, Mutator family YPO2805 PF00248 Aldo/keto reductase family YPO2806 PF00248 Aldo/keto reductase family YPO2807 PF03466 LysR substrate binding domain YPO2807 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPO2808 PF02796 Helix-turn-helix domain of resolvase YPO2808 PF00665 Integrase core domain YPO2809 PF01695 IstB-like ATP binding protein YPO2813 PF00782 Dual specificity phosphatase, catalytic domain YPO2814 PF12146 Serine aminopeptidase, S33 YPO2814 PF12147 Putative methyltransferase YPO2815 PF01553 Acyltransferase YPO2817 PF01066 CDP-alcohol phosphatidyltransferase YPO2819 PF00589 Phage integrase family YPO2824 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain YPO2824 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain YPO2826 PF01797 Transposase IS200 like YPO2828 PF02769 AIR synthase related protein, C-terminal domain YPO2828 PF00586 AIR synthase related protein, N-terminal domain YPO2829 PF00551 Formyl transferase YPO2830 PF13302 Acetyltransferase (GNAT) domain YPO2833 PF00005 ABC transporter YPO2834 PF00528 Binding-protein-dependent transport system inner membrane component YPO2835 PF00528 Binding-protein-dependent transport system inner membrane component YPO2836 PF17941 Polyphosphate kinase C-terminal domain 1 YPO2836 PF02503 Polyphosphate kinase middle domain YPO2836 PF13089 Polyphosphate kinase N-terminal domain YPO2836 PF13090 Polyphosphate kinase C-terminal domain 2 YPO2837 PF02541 Ppx/GppA phosphatase family YPO2839 PF01769 Divalent cation transporter YPO2839 PF00571 CBS domain YPO2839 PF03448 MgtE intracellular N domain YPO2840 PF00012 Hsp70 protein YPO2841 PF00528 Binding-protein-dependent transport system inner membrane component YPO2842 PF00528 Binding-protein-dependent transport system inner membrane component YPO2844 PF00202 Aminotransferase class-III YPO2845 PF00392 Bacterial regulatory proteins, gntR family YPO2845 PF00155 Aminotransferase class I and II YPO2846 PF00005 ABC transporter YPO2846 PF08402 TOBE domain YPO2847 PF13533 Biotin-lipoyl like YPO2848 PF00873 AcrB/AcrD/AcrF family YPO2849 PF00873 AcrB/AcrD/AcrF family YPO2850 PF07690 Major Facilitator Superfamily YPO2853 PF00072 Response regulator receiver domain YPO2853 PF00486 Transcriptional regulatory protein, C terminal YPO2854 PF07411 Domain of unknown function (DUF1508) YPO2856 PF00781 Diacylglycerol kinase catalytic domain YPO2859 PF08543 Phosphomethylpyrimidine kinase YPO2862 PF00872 Transposase, Mutator family YPO2868 PF05638 Type VI secretion system effector, Hcp YPO2869 PF01797 Transposase IS200 like YPO2870 PF02540 NAD synthase YPO2870 PF00958 GMP synthase C terminal domain YPO2870 PF00117 Glutamine amidotransferase class-I YPO2871 PF00571 CBS domain YPO2871 PF00478 IMP dehydrogenase / GMP reductase domain YPO2872 PF02601 Exonuclease VII, large subunit YPO2872 PF13742 OB-fold nucleic acid binding domain YPO2873 PF07191 zinc-ribbons YPO2875 PF01926 50S ribosome-binding GTPase YPO2875 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal YPO2876 PF13360 PQQ-like domain YPO2877 PF09976 Tetratricopeptide repeat-like domain YPO2878 PF03129 Anticodon binding domain YPO2878 PF13393 Histidyl-tRNA synthetase YPO2879 PF04551 GcpE protein YPO2880 PF13464 Domain of unknown function (DUF4115) YPO2882 PF04055 Radical SAM superfamily YPO2883 PF00334 Nucleoside diphosphate kinase YPO2886 PF03797 Autotransporter beta-domain YPO2886 PF16168 Adhesin of bacterial autotransporter system, probable stalk YPO2886 PF03212 Pertactin YPO2888 PF14581 SseB protein C-terminal domain YPO2888 PF07179 SseB protein N-terminal domain YPO2889 PF00883 Cytosol aminopeptidase family, catalytic domain YPO2889 PF12404 Peptidase YPO2890 PF04384 Iron-sulphur cluster assembly YPO2891 PF00111 2Fe-2S iron-sulfur cluster binding domain YPO2892 PF00012 Hsp70 protein YPO2893 PF00226 DnaJ domain YPO2893 PF07743 HSCB C-terminal oligomerisation domain YPO2894 PF01521 Iron-sulphur cluster biosynthesis YPO2895 PF01592 NifU-like N terminal domain YPO2896 PF00266 Aminotransferase class-V YPO2897 PF02082 Transcriptional regulator YPO2898 PF00588 SpoU rRNA Methylase family YPO2899 PF00459 Inositol monophosphatase family YPO2900 PF01797 Transposase IS200 like YPO2901 PF03824 High-affinity nickel-transport protein YPO2902 PF06226 Protein of unknown function (DUF1007) YPO2903 PF00874 PRD domain YPO2904 PF12832 MFS_1 like family YPO2905 PF13505 Outer membrane protein beta-barrel domain YPO2907 PF00464 Serine hydroxymethyltransferase YPO2908 PF00042 Globin YPO2908 PF00175 Oxidoreductase NAD-binding domain YPO2908 PF00970 Oxidoreductase FAD-binding domain YPO2911 PF00543 Nitrogen regulatory protein P-II YPO2912 PF00795 Carbon-nitrogen hydrolase YPO2912 PF02540 NAD synthase YPO2914 PF00158 Sigma-54 interaction domain YPO2914 PF00072 Response regulator receiver domain YPO2915 PF13942 YfhG lipoprotein YPO2916 PF00512 His Kinase A (phospho-acceptor) domain YPO2916 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPO2917 PF01797 Transposase IS200 like YPO2921 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain YPO2921 PF02769 AIR synthase related protein, C-terminal domain YPO2921 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal YPO2922 PF01464 Transglycosylase SLT domain YPO2922 PF00497 Bacterial extracellular solute-binding proteins, family 3 YPO2923 PF14437 MafB19-like deaminase YPO2925 PF01380 SIS domain YPO2926 PF01380 SIS domain YPO2926 PF01418 Helix-turn-helix domain, rpiR family YPO2927 PF12838 4Fe-4S dicluster domain YPO2928 PF01797 Transposase IS200 like YPO2929 PF01648 4'-phosphopantetheinyl transferase superfamily YPO2930 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ YPO2931 PF01695 IstB-like ATP binding protein YPO2932 PF00665 Integrase core domain YPO2932 PF02796 Helix-turn-helix domain of resolvase YPO2942 PF00872 Transposase, Mutator family YPO2944 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain YPO2944 PF02753 Pili assembly chaperone PapD, C-terminal domain YPO2945 PF16970 Type-1 fimbrial protein, A YPO2946 PF07724 AAA domain (Cdc48 subfamily) YPO2946 PF17871 AAA lid domain YPO2946 PF10431 C-terminal, D2-small domain, of ClpB protein YPO2946 PF00004 ATPase family associated with various cellular activities (AAA) YPO2957 PF13406 Transglycosylase SLT domain YPO2959 PF00528 Binding-protein-dependent transport system inner membrane component YPO2960 PF00005 ABC transporter YPO2962 PF05638 Type VI secretion system effector, Hcp YPO2965 PF04879 Molybdopterin oxidoreductase Fe4S4 domain YPO2965 PF00384 Molybdopterin oxidoreductase YPO2965 PF01568 Molydopterin dinucleotide binding domain YPO2966 PF13247 4Fe-4S dicluster domain YPO2966 PF12800 4Fe-4S binding domain YPO2967 PF04976 DMSO reductase anchor subunit (DmsC) YPO2968 PF02613 Nitrate reductase delta subunit YPO2970 PF05643 Putative bacterial lipoprotein (DUF799) YPO2972 PF03783 Curli production assembly/transport component CsgG YPO2974 PF01292 Prokaryotic cytochrome b561 YPO2975 PF00155 Aminotransferase class I and II YPO2976 PF07350 Protein of unknown function (DUF1479) YPO2977 PF02685 Glucokinase YPO2979 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPO2979 PF03466 LysR substrate binding domain YPO2980 PF00248 Aldo/keto reductase family YPO2982 PF01566 Natural resistance-associated macrophage protein YPO2983 PF07670 Nucleoside recognition YPO2983 PF07662 Na+ dependent nucleoside transporter C-terminus YPO2983 PF01773 Na+ dependent nucleoside transporter N-terminus YPO2984 PF00749 tRNA synthetases class I (E and Q), catalytic domain YPO2985 PF01797 Transposase IS200 like YPO2988 PF12843 Putative quorum-sensing-regulated virulence factor YPO2989 PF00533 BRCA1 C Terminus (BRCT) domain YPO2989 PF12826 Helix-hairpin-helix motif YPO2989 PF03120 NAD-dependent DNA ligase OB-fold domain YPO2989 PF03119 NAD-dependent DNA ligase C4 zinc finger domain YPO2989 PF01653 NAD-dependent DNA ligase adenylation domain YPO2990 PF04354 ZipA, C-terminal FtsZ-binding domain YPO2992 PF00291 Pyridoxal-phosphate dependent enzyme YPO2993 PF00381 PTS HPr component phosphorylation site YPO2994 PF02896 PEP-utilising enzyme, TIM barrel domain YPO2994 PF05524 PEP-utilising enzyme, N-terminal YPO2994 PF00391 PEP-utilising enzyme, mobile domain YPO2995 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 YPO2996 PF01797 Transposase IS200 like YPO2997 PF16527 Two-component sensor protein CpxA, periplasmic domain YPO2997 PF00512 His Kinase A (phospho-acceptor) domain YPO2997 PF00672 HAMP domain YPO2997 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPO2998 PF00072 Response regulator receiver domain YPO2998 PF00486 Transcriptional regulatory protein, C terminal YPO2999 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion YPO3000 PF00005 ABC transporter YPO3000 PF02687 FtsX-like permease family YPO3000 PF12704 MacB-like periplasmic core domain YPO3001 PF07992 Pyridine nucleotide-disulphide oxidoreductase YPO3001 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain YPO3002 PF00474 Sodium:solute symporter family YPO3006 PF00155 Aminotransferase class I and II YPO3008 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPO3008 PF00672 HAMP domain YPO3008 PF00512 His Kinase A (phospho-acceptor) domain YPO3009 PF00486 Transcriptional regulatory protein, C terminal YPO3009 PF00072 Response regulator receiver domain YPO3011 PF00291 Pyridoxal-phosphate dependent enzyme YPO3012 PF00005 ABC transporter YPO3013 PF00528 Binding-protein-dependent transport system inner membrane component YPO3014 PF00528 Binding-protein-dependent transport system inner membrane component YPO3016 PF07690 Major Facilitator Superfamily YPO3017 PF01380 SIS domain YPO3017 PF01418 Helix-turn-helix domain, rpiR family YPO3019 PF04074 YhcH/YjgK/YiaL YPO3020 PF00480 ROK family YPO3023 PF04131 Putative N-acetylmannosamine-6-phosphate epimerase YPO3024 PF00701 Dihydrodipicolinate synthetase family YPO3025 PF04261 Dyp-type peroxidase family YPO3026 PF06572 Protein of unknown function (DUF1131) YPO3027 PF04076 Bacterial OB fold (BOF) protein YPO3028 PF03212 Pertactin YPO3028 PF03797 Autotransporter beta-domain YPO3028 PF16168 Adhesin of bacterial autotransporter system, probable stalk YPO3028 PF13018 Extended Signal Peptide of Type V secretion system YPO3031 PF00583 Acetyltransferase (GNAT) family YPO3032 PF01218 Coproporphyrinogen III oxidase YPO3033 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 YPO3034 PF03949 Malic enzyme, NAD binding domain YPO3034 PF00390 Malic enzyme, N-terminal domain YPO3034 PF01515 Phosphate acetyl/butaryl transferase YPO3035 PF00293 NUDIX domain YPO3036 PF03264 NapC/NirT cytochrome c family, N-terminal region YPO3037 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) YPO3038 PF04879 Molybdopterin oxidoreductase Fe4S4 domain YPO3038 PF00384 Molybdopterin oxidoreductase YPO3038 PF01568 Molydopterin dinucleotide binding domain YPO3038 PF10518 TAT (twin-arginine translocation) pathway signal sequence YPO3039 PF03927 NapD protein YPO3040 PF12800 4Fe-4S binding domain YPO3040 PF13187 4Fe-4S dicluster domain YPO3040 PF00037 4Fe-4S binding domain YPO3041 PF00196 Bacterial regulatory proteins, luxR family YPO3041 PF00072 Response regulator receiver domain YPO3043 PF00873 AcrB/AcrD/AcrF family YPO3045 PF04307 LexA-binding, inner membrane-associated putative hydrolase YPO3046 PF13186 Iron-sulfur cluster-binding domain YPO3046 PF04055 Radical SAM superfamily YPO3047 PF00884 Sulfatase YPO3048 PF00005 ABC transporter YPO3048 PF08402 TOBE domain YPO3049 PF00528 Binding-protein-dependent transport system inner membrane component YPO3052 PF03960 ArsC family YPO3053 PF07687 Peptidase dimerisation domain YPO3053 PF01546 Peptidase family M20/M25/M40 YPO3054 PF02557 D-alanyl-D-alanine carboxypeptidase YPO3055 PF13980 Uncharacterised protein family (UPF0370) YPO3056 PF13718 GNAT acetyltransferase 2 YPO3056 PF05127 Helicase YPO3056 PF17176 tRNA-binding domain YPO3056 PF08351 Domain of unknown function (DUF1726) YPO3057 PF04284 Protein of unknown function (DUF441) YPO3058 PF04228 Putative neutral zinc metallopeptidase YPO3059 PF01259 SAICAR synthetase YPO3060 PF01797 Transposase IS200 like YPO3061 PF06804 NlpB/DapX lipoprotein YPO3062 PF00701 Dihydrodipicolinate synthetase family YPO3063 PF01842 ACT domain YPO3064 PF00578 AhpC/TSA family YPO3068 PF01594 AI-2E family transporter YPO3069 PF01435 Peptidase family M48 YPO3069 PF07720 Tetratricopeptide repeat YPO3070 PF03960 ArsC family YPO3071 PF00308 Bacterial dnaA protein YPO3072 PF01797 Transposase IS200 like YPO3073 PF01406 tRNA synthetases class I (C) catalytic domain YPO3073 PF09190 DALR domain YPO3074 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD YPO3075 PF00149 Calcineurin-like phosphoesterase YPO3076 PF00731 AIR carboxylase YPO3077 PF02222 ATP-grasp domain YPO3077 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain YPO3079 PF00005 ABC transporter YPO3080 PF13472 GDSL-like Lipase/Acylhydrolase family YPO3081 PF00106 short chain dehydrogenase YPO3082 PF00085 Thioredoxin YPO3083 PF16200 C-terminal region of band_7 YPO3083 PF01145 SPFH domain / Band 7 family YPO3084 PF01957 NfeD-like C-terminal, partner-binding YPO3085 PF13411 MerR HTH family regulatory protein YPO3086 PF00403 Heavy-metal-associated domain YPO3087 PF01963 TraB family YPO3088 PF04073 Aminoacyl-tRNA editing domain YPO3093 PF07690 Major Facilitator Superfamily YPO3094 PF02254 TrkA-N domain YPO3094 PF00999 Sodium/hydrogen exchanger family YPO3095 PF00294 pfkB family carbohydrate kinase YPO3096 PF02706 Chain length determinant protein YPO3097 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II YPO3097 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I YPO3097 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III YPO3097 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain YPO3098 PF00535 Glycosyl transferase family 2 YPO3099 PF01050 Mannose-6-phosphate isomerase YPO3099 PF00483 Nucleotidyl transferase YPO3104 PF13439 Glycosyltransferase Family 4 YPO3104 PF00534 Glycosyl transferases group 1 YPO3112 PF01370 NAD dependent epimerase/dehydratase family YPO3113 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family YPO3115 PF00483 Nucleotidyl transferase YPO3116 PF00111 2Fe-2S iron-sulfur cluster binding domain YPO3116 PF00970 Oxidoreductase FAD-binding domain YPO3116 PF00175 Oxidoreductase NAD-binding domain YPO3117 PF00762 Ferrochelatase YPO3118 PF05191 Adenylate kinase, active site lid YPO3119 PF00183 Hsp90 protein YPO3119 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPO3120 PF02132 RecR protein YPO3120 PF13662 Toprim domain YPO3121 PF02575 YbaB/EbfC DNA-binding family YPO3122 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding YPO3122 PF12169 DNA polymerase III subunits gamma and tau domain III YPO3122 PF12170 DNA polymerase III tau subunit V interacting with alpha YPO3123 PF00156 Phosphoribosyl transferase domain YPO3128 PF10689 Protein of unknown function (DUF2496) YPO3129 PF12795 Mechanosensitive ion channel porin domain YPO3129 PF12794 Mechanosensitive ion channel inner membrane domain 1 YPO3129 PF00924 Mechanosensitive ion channel YPO3130 PF02635 DsrE/DsrF-like family YPO3131 PF00440 Bacterial regulatory proteins, tetR family YPO3131 PF08361 MAATS-type transcriptional repressor, C-terminal region YPO3132 PF00529 HlyD membrane-fusion protein of T1SS YPO3132 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion YPO3133 PF00873 AcrB/AcrD/AcrF family YPO3134 PF01197 Ribosomal protein L31 YPO3135 PF00444 Ribosomal protein L36 YPO3137 PF10757 Biofilm formation regulator YbaJ YPO3138 PF05321 Haemolysin expression modulating protein YPO3139 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain YPO3140 PF09619 Type III secretion system lipoprotein chaperone (YscW) YPO3142 PF00909 Ammonium Transporter Family YPO3143 PF00543 Nitrogen regulatory protein P-II YPO3144 PF00005 ABC transporter YPO3144 PF00664 ABC transporter transmembrane region YPO3145 PF00664 ABC transporter transmembrane region YPO3145 PF00005 ABC transporter YPO3146 PF13404 AsnC-type helix-turn-helix domain YPO3146 PF01037 Lrp/AsnC ligand binding domain YPO3147 PF00291 Pyridoxal-phosphate dependent enzyme YPO3149 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle YPO3149 PF12793 Sugar transport-related sRNA regulator N-term YPO3150 PF06508 Queuosine biosynthesis protein QueC YPO3153 PF13145 PPIC-type PPIASE domain YPO3154 PF00216 Bacterial DNA-binding protein YPO3155 PF00004 ATPase family associated with various cellular activities (AAA) YPO3155 PF05362 Lon protease (S16) C-terminal proteolytic domain YPO3155 PF02190 ATP-dependent protease La (LON) substrate-binding domain YPO3156 PF10431 C-terminal, D2-small domain, of ClpB protein YPO3156 PF06689 ClpX C4-type zinc finger YPO3156 PF07724 AAA domain (Cdc48 subfamily) YPO3157 PF00574 Clp protease YPO3158 PF05697 Bacterial trigger factor protein (TF) YPO3158 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase YPO3158 PF05698 Bacterial trigger factor protein (TF) C-terminus YPO3160 PF01722 BolA-like protein YPO3161 PF08139 Prokaryotic membrane lipoprotein lipid attachment site YPO3161 PF03923 Uncharacterized lipoprotein YPO3162 PF07690 Major Facilitator Superfamily YPO3163 PF03502 Nucleoside-specific channel-forming protein, Tsx YPO3164 PF06481 COX Aromatic Rich Motif YPO3164 PF00116 Cytochrome C oxidase subunit II, periplasmic domain YPO3165 PF00115 Cytochrome C and Quinol oxidase polypeptide I YPO3166 PF00510 Cytochrome c oxidase subunit III YPO3167 PF03626 Prokaryotic Cytochrome C oxidase subunit IV YPO3168 PF01040 UbiA prenyltransferase family YPO3169 PF07690 Major Facilitator Superfamily YPO3170 PF04461 Protein of unknown function (DUF520) YPO3171 PF02558 Ketopantoate reductase PanE/ApbA YPO3171 PF08546 Ketopantoate reductase PanE/ApbA C terminal YPO3172 PF01965 DJ-1/PfpI family YPO3173 PF02926 THUMP domain YPO3173 PF02568 Thiamine biosynthesis protein (ThiI) YPO3175 PF02609 Exonuclease VII small subunit YPO3176 PF00348 Polyprenyl synthetase YPO3177 PF02780 Transketolase, C-terminal domain YPO3177 PF02779 Transketolase, pyrimidine binding domain YPO3177 PF13292 1-deoxy-D-xylulose-5-phosphate synthase YPO3178 PF01797 Transposase IS200 like YPO3179 PF04608 Phosphatidylglycerophosphatase A YPO3180 PF02769 AIR synthase related protein, C-terminal domain YPO3180 PF00586 AIR synthase related protein, N-terminal domain YPO3181 PF01029 NusB family YPO3182 PF00885 6,7-dimethyl-8-ribityllumazine synthase YPO3183 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region YPO3183 PF01872 RibD C-terminal domain YPO3184 PF03477 ATP cone domain YPO3187 PF01797 Transposase IS200 like YPO3188 PF07549 SecD/SecF GG Motif YPO3188 PF02355 Protein export membrane protein YPO3189 PF02355 Protein export membrane protein YPO3189 PF07549 SecD/SecF GG Motif YPO3189 PF13721 SecD export protein N-terminal TM region YPO3190 PF02699 Preprotein translocase subunit YPO3191 PF01702 Queuine tRNA-ribosyltransferase YPO3192 PF02547 Queuosine biosynthesis protein YPO3193 PF04336 Acyl carrier protein phosphodiesterase YPO3194 PF00578 AhpC/TSA family YPO3194 PF10417 C-terminal domain of 1-Cys peroxiredoxin YPO3195 PF01797 Transposase IS200 like YPO3200 PF02903 Alpha amylase, N-terminal ig-like domain YPO3200 PF00128 Alpha amylase, catalytic domain YPO3201 PF00324 Amino acid permease YPO3202 PF05525 Branched-chain amino acid transport protein YPO3203 PF12849 PBP superfamily domain YPO3204 PF11808 Phosphate regulon sensor protein PhoR YPO3204 PF00512 His Kinase A (phospho-acceptor) domain YPO3204 PF00989 PAS fold YPO3204 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPO3205 PF00072 Response regulator receiver domain YPO3205 PF00486 Transcriptional regulatory protein, C terminal YPO3206 PF12320 Type 5 capsule protein repressor C-terminal domain YPO3206 PF00149 Calcineurin-like phosphoesterase YPO3208 PF01695 IstB-like ATP binding protein YPO3209 PF00665 Integrase core domain YPO3209 PF02796 Helix-turn-helix domain of resolvase YPO3211 PF00480 ROK family YPO3212 PF04381 Putative exonuclease, RdgC YPO3213 PF06865 Pyrimidine/purine nucleoside phosphorylase YPO3215 PF01202 Shikimate kinase YPO3218 PF08241 Methyltransferase domain YPO3220 PF07238 PilZ domain YPO3220 PF07317 Flagellar regulator YcgR YPO3221 PF00171 Aldehyde dehydrogenase family YPO3222 PF00696 Amino acid kinase family YPO3222 PF01472 PUA domain YPO3223 PF07417 Sigma factor-binding transcriptional regulator Crl YPO3225 PF00156 Phosphoribosyl transferase domain YPO3228 PF03466 LysR substrate binding domain YPO3228 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPO3230 PF07687 Peptidase dimerisation domain YPO3230 PF01546 Peptidase family M20/M25/M40 YPO3231 PF00817 impB/mucB/samB family YPO3231 PF11798 IMS family HHH motif YPO3231 PF11799 impB/mucB/samB family C-terminal domain YPO3232 PF03009 Glycerophosphoryl diester phosphodiesterase family YPO3234 PF02424 ApbE family YPO3235 PF00175 Oxidoreductase NAD-binding domain YPO3235 PF00970 Oxidoreductase FAD-binding domain YPO3235 PF00111 2Fe-2S iron-sulfur cluster binding domain YPO3236 PF02508 Rnf-Nqr subunit, membrane protein YPO3237 PF02508 Rnf-Nqr subunit, membrane protein YPO3238 PF04205 FMN-binding domain YPO3239 PF03116 NQR2, RnfD, RnfE family YPO3240 PF11973 NQRA C-terminal domain YPO3240 PF05896 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) YPO3241 PF03734 L,D-transpeptidase catalytic domain YPO3242 PF13230 Glutamine amidotransferases class-II YPO3243 PF13580 SIS domain YPO3244 PF09317 Domain of unknown function (DUF1974) YPO3244 PF00441 Acyl-CoA dehydrogenase, C-terminal domain YPO3244 PF02771 Acyl-CoA dehydrogenase, N-terminal domain YPO3246 PF18254 HMW1 domain 2 YPO3246 PF18071 HMW1C N-terminal YPO3247 PF05860 haemagglutination activity domain YPO3248 PF08479 POTRA domain, ShlB-type YPO3248 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB YPO3249 PF07687 Peptidase dimerisation domain YPO3249 PF01546 Peptidase family M20/M25/M40 YPO3251 PF02796 Helix-turn-helix domain of resolvase YPO3251 PF00665 Integrase core domain YPO3252 PF01695 IstB-like ATP binding protein YPO3254 PF00005 ABC transporter YPO3256 PF00528 Binding-protein-dependent transport system inner membrane component YPO3257 PF00497 Bacterial extracellular solute-binding proteins, family 3 YPO3261 PF01425 Amidase YPO3263 PF07690 Major Facilitator Superfamily YPO3264 PF03591 AzlC protein YPO3265 PF05437 Branched-chain amino acid transport protein (AzlD) YPO3266 PF01047 MarR family YPO3267 PF00529 HlyD membrane-fusion protein of T1SS YPO3267 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion YPO3268 PF07690 Major Facilitator Superfamily YPO3269 PF08032 RNA 2'-O ribose methyltransferase substrate binding YPO3269 PF00588 SpoU rRNA Methylase family YPO3270 PF00085 Thioredoxin YPO3272 PF00583 Acetyltransferase (GNAT) family YPO3272 PF13380 CoA binding domain YPO3272 PF13607 Succinyl-CoA ligase like flavodoxin domain YPO3273 PF13091 PLD-like domain YPO3274 PF10043 Predicted periplasmic lipoprotein (DUF2279) YPO3275 PF00004 ATPase family associated with various cellular activities (AAA) YPO3275 PF07724 AAA domain (Cdc48 subfamily) YPO3275 PF17871 AAA lid domain YPO3275 PF02861 Clp amino terminal domain, pathogenicity island component YPO3275 PF10431 C-terminal, D2-small domain, of ClpB protein YPO3277 PF01479 S4 domain YPO3277 PF00849 RNA pseudouridylate synthase YPO3278 PF13525 Outer membrane lipoprotein YPO3279 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein YPO3280 PF01797 Transposase IS200 like YPO3282 PF02796 Helix-turn-helix domain of resolvase YPO3282 PF00665 Integrase core domain YPO3283 PF01695 IstB-like ATP binding protein YPO3285 PF02153 Prephenate dehydrogenase YPO3285 PF01817 Chorismate mutase type II YPO3286 PF00793 DAHP synthetase I family YPO3287 PF04397 LytTr DNA-binding domain YPO3287 PF00072 Response regulator receiver domain YPO3290 PF04338 Protein of unknown function, DUF481 YPO3291 PF01797 Transposase IS200 like YPO3292 PF01245 Ribosomal protein L19 YPO3293 PF01746 tRNA (Guanine-1)-methyltransferase YPO3294 PF05239 PRC-barrel domain YPO3294 PF01782 RimM N-terminal domain YPO3295 PF00886 Ribosomal protein S16 YPO3296 PF00448 SRP54-type protein, GTPase domain YPO3296 PF02978 Signal peptide binding domain YPO3296 PF02881 SRP54-type protein, helical bundle domain YPO3297 PF01578 Cytochrome C assembly protein YPO3298 PF03471 Transporter associated domain YPO3298 PF01595 Cyclin M transmembrane N-terminal domain YPO3298 PF00571 CBS domain YPO3299 PF01797 Transposase IS200 like YPO3300 PF02664 S-Ribosylhomocysteinase (LuxS) YPO3301 PF04262 Glutamate-cysteine ligase YPO3302 PF09335 SNARE associated Golgi protein YPO3303 PF13419 Haloacid dehalogenase-like hydrolase YPO3304 PF02599 Global regulator protein family YPO3305 PF02272 DHHA1 domain YPO3305 PF01411 tRNA synthetases class II (A) YPO3305 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain YPO3306 PF02631 RecX family YPO3307 PF00154 recA bacterial DNA recombination protein YPO3308 PF02464 Competence-damaged protein YPO3309 PF07690 Major Facilitator Superfamily YPO3312 PF02782 FGGY family of carbohydrate kinases, C-terminal domain YPO3312 PF00370 FGGY family of carbohydrate kinases, N-terminal domain YPO3313 PF02780 Transketolase, C-terminal domain YPO3313 PF02779 Transketolase, pyrimidine binding domain YPO3314 PF00456 Transketolase, thiamine diphosphate binding domain YPO3315 PF02653 Branched-chain amino acid transport system / permease component YPO3316 PF00005 ABC transporter YPO3319 PF00141 Peroxidase YPO3320 PF07361 Cytochrome b562 YPO3321 PF01292 Prokaryotic cytochrome b561 YPO3322 PF02613 Nitrate reductase delta subunit YPO3323 PF04976 DMSO reductase anchor subunit (DmsC) YPO3324 PF13247 4Fe-4S dicluster domain YPO3324 PF12800 4Fe-4S binding domain YPO3325 PF04879 Molybdopterin oxidoreductase Fe4S4 domain YPO3325 PF01568 Molydopterin dinucleotide binding domain YPO3325 PF00384 Molybdopterin oxidoreductase YPO3326 PF00596 Class II Aldolase and Adducin N-terminal domain YPO3327 PF08220 DeoR-like helix-turn-helix domain YPO3327 PF00455 DeoR C terminal sensor domain YPO3329 PF01797 Transposase IS200 like YPO3330 PF00005 ABC transporter YPO3331 PF02653 Branched-chain amino acid transport system / permease component YPO3332 PF02653 Branched-chain amino acid transport system / permease component YPO3333 PF01261 Xylose isomerase-like TIM barrel YPO3334 PF00370 FGGY family of carbohydrate kinases, N-terminal domain YPO3334 PF02782 FGGY family of carbohydrate kinases, C-terminal domain YPO3335 PF05683 Fumarase C-terminus YPO3335 PF05681 Fumarate hydratase (Fumerase) YPO3337 PF00557 Metallopeptidase family M24 YPO3342 PF14376 Haem-binding domain YPO3342 PF00034 Cytochrome c YPO3342 PF03150 Di-haem cytochrome c peroxidase YPO3343 PF00497 Bacterial extracellular solute-binding proteins, family 3 YPO3346 PF01022 Bacterial regulatory protein, arsR family YPO3347 PF02040 Arsenical pump membrane protein YPO3348 PF13936 Helix-turn-helix domain YPO3348 PF04198 Putative sugar-binding domain YPO3349 PF02734 DAK2 domain YPO3350 PF02733 Dak1 domain YPO3352 PF00107 Zinc-binding dehydrogenase YPO3352 PF08240 Alcohol dehydrogenase GroES-like domain YPO3353 PF02502 Ribose/Galactose Isomerase YPO3354 PF00488 MutS domain V YPO3354 PF05190 MutS family domain IV YPO3354 PF05192 MutS domain III YPO3354 PF01624 MutS domain I YPO3354 PF05188 MutS domain II YPO3355 PF04539 Sigma-70 region 3 YPO3355 PF00140 Sigma-70 factor, region 1.2 YPO3355 PF04542 Sigma-70 region 2 YPO3355 PF04545 Sigma-70, region 4 YPO3356 PF01551 Peptidase family M23 YPO3356 PF01476 LysM domain YPO3358 PF01975 Survival protein SurE YPO3359 PF01142 tRNA pseudouridine synthase D (TruD) YPO3360 PF02542 YgbB family YPO3361 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase YPO3362 PF04977 Septum formation initiator YPO3363 PF12084 Protein of unknown function (DUF3561) YPO3365 PF00009 Elongation factor Tu GTP binding domain YPO3366 PF01507 Phosphoadenosine phosphosulfate reductase family YPO3367 PF14824 Sirohaem biosynthesis protein central YPO3367 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases YPO3367 PF10414 Sirohaem synthase dimerisation region YPO3371 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain YPO3371 PF01077 Nitrite and sulphite reductase 4Fe-4S domain YPO3372 PF00667 FAD binding domain YPO3372 PF00175 Oxidoreductase NAD-binding domain YPO3372 PF00258 Flavodoxin YPO3373 PF01242 6-pyruvoyl tetrahydropterin synthase YPO3374 PF04055 Radical SAM superfamily YPO3375 PF00080 Copper/zinc superoxide dismutase (SODC) YPO3376 PF03952 Enolase, N-terminal domain YPO3376 PF00113 Enolase, C-terminal TIM barrel domain YPO3377 PF00117 Glutamine amidotransferase class-I YPO3377 PF06418 CTP synthase N-terminus YPO3378 PF03819 MazG nucleotide pyrophosphohydrolase domain YPO3380 PF04607 Region found in RelA / SpoT proteins YPO3380 PF02824 TGS domain YPO3380 PF13291 ACT domain YPO3381 PF00672 HAMP domain YPO3381 PF00512 His Kinase A (phospho-acceptor) domain YPO3381 PF01627 Hpt domain YPO3381 PF00072 Response regulator receiver domain YPO3381 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) YPO3381 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPO3382 PF00595 PDZ domain YPO3383 PF01966 HD domain YPO3383 PF13286 Phosphohydrolase-associated domain YPO3384 PF01048 Phosphorylase superfamily YPO3385 PF01497 Periplasmic binding protein YPO3386 PF03458 UPF0126 domain YPO3387 PF01521 Iron-sulphur cluster biosynthesis YPO3388 PF00654 Voltage gated chloride channel YPO3389 PF00202 Aminotransferase class-III YPO3390 PF01032 FecCD transport family YPO3391 PF01497 Periplasmic binding protein YPO3392 PF00005 ABC transporter YPO3393 PF00912 Transglycosylase YPO3393 PF14814 Bifunctional transglycosylase second domain YPO3393 PF14812 Transmembrane domain of transglycosylase PBP1 at N-terminal YPO3393 PF00905 Penicillin binding protein transpeptidase domain YPO3394 PF08482 ATP-dependent helicase C-terminal YPO3394 PF00271 Helicase conserved C-terminal domain YPO3394 PF04408 Helicase associated domain (HA2) YPO3394 PF00270 DEAD/DEAH box helicase YPO3395 PF02834 LigT like Phosphoesterase YPO3396 PF03749 Sugar fermentation stimulation protein RE domain YPO3396 PF17746 SfsA N-terminal OB domain YPO3397 PF01258 Prokaryotic dksA/traR C4-type zinc finger YPO3398 PF00749 tRNA synthetases class I (E and Q), catalytic domain YPO3399 PF01743 Poly A polymerase head domain YPO3399 PF12627 Probable RNA and SrmB- binding site of polymerase A YPO3399 PF12626 Polymerase A arginine-rich C-terminus YPO3400 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) YPO3401 PF02548 Ketopantoate hydroxymethyltransferase YPO3402 PF02569 Pantoate-beta-alanine ligase YPO3403 PF02261 Aspartate decarboxylase YPO3404 PF01522 Polysaccharide deacetylase YPO3405 PF01061 ABC-2 type transporter YPO3406 PF00005 ABC transporter YPO3407 PF00484 Carbonic anhydrase YPO3408 PF00156 Phosphoribosyl transferase domain YPO3409 PF07732 Multicopper oxidase YPO3409 PF07731 Multicopper oxidase YPO3409 PF00394 Multicopper oxidase YPO3409 PF10518 TAT (twin-arginine translocation) pathway signal sequence YPO3410 PF09691 Type II secretion system pilotin lipoprotein (PulS_OutS) YPO3411 PF17284 Spermidine synthase tetramerisation domain YPO3412 PF02675 S-adenosylmethionine decarboxylase YPO3413 PF00892 EamA-like transporter family YPO3414 PF06062 Uncharacterised protein family (UPF0231) YPO3415 PF06434 Aconitate hydratase 2 N-terminus YPO3415 PF11791 Aconitate B N-terminal domain YPO3415 PF00330 Aconitase family (aconitate hydratase) YPO3416 PF01797 Transposase IS200 like YPO3417 PF07992 Pyridine nucleotide-disulphide oxidoreductase YPO3417 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain YPO3418 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) YPO3418 PF02817 e3 binding domain YPO3418 PF00364 Biotin-requiring enzyme YPO3419 PF17831 Pyruvate dehydrogenase E1 component middle domain YPO3419 PF00456 Transketolase, thiamine diphosphate binding domain YPO3420 PF00392 Bacterial regulatory proteins, gntR family YPO3420 PF07729 FCD domain YPO3421 PF00324 Amino acid permease YPO3422 PF17113 Regulatory signalling modulator protein AmpE YPO3423 PF01510 N-acetylmuramoyl-L-alanine amidase YPO3424 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain YPO3424 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain YPO3425 PF07963 Prokaryotic N-terminal methylation motif YPO3426 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain YPO3426 PF00437 Type II/IV secretion system protein YPO3427 PF00482 Type II secretion system (T2SS), protein F YPO3428 PF00478 IMP dehydrogenase / GMP reductase domain YPO3430 PF01121 Dephospho-CoA kinase YPO3431 PF07072 Cell division protein YPO3432 PF03884 DNA gyrase inhibitor YacG YPO3433 PF01797 Transposase IS200 like YPO3434 PF00665 Integrase core domain YPO3434 PF02796 Helix-turn-helix domain of resolvase YPO3435 PF01695 IstB-like ATP binding protein YPO3438 PF13356 Arm DNA-binding domain YPO3438 PF00589 Phage integrase family YPO3439 PF03739 Lipopolysaccharide export system permease LptF/LptG YPO3440 PF03739 Lipopolysaccharide export system permease LptF/LptG YPO3441 PF00883 Cytosol aminopeptidase family, catalytic domain YPO3441 PF02789 Cytosol aminopeptidase family, N-terminal domain YPO3442 PF04364 DNA polymerase III chi subunit, HolC YPO3443 PF00133 tRNA synthetases class I (I, L, M and V) YPO3443 PF08264 Anticodon-binding domain of tRNA YPO3443 PF10458 Valyl tRNA synthetase tRNA binding arm YPO3444 PF00583 Acetyltransferase (GNAT) family YPO3445 PF06877 Regulator of ribonuclease activity B YPO3446 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain YPO3446 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain YPO3447 PF04074 YhcH/YjgK/YiaL YPO3450 PF00528 Binding-protein-dependent transport system inner membrane component YPO3451 PF12911 N-terminal TM domain of oligopeptide transport permease C YPO3451 PF00528 Binding-protein-dependent transport system inner membrane component YPO3452 PF08352 Oligopeptide/dipeptide transporter, C-terminal region YPO3452 PF00005 ABC transporter YPO3453 PF08352 Oligopeptide/dipeptide transporter, C-terminal region YPO3453 PF00005 ABC transporter YPO3454 PF03477 ATP cone domain YPO3454 PF13597 Anaerobic ribonucleoside-triphosphate reductase YPO3456 PF00392 Bacterial regulatory proteins, gntR family YPO3456 PF07702 UTRA domain YPO3457 PF06754 Phosphonate metabolism protein PhnG YPO3458 PF05845 Bacterial phosphonate metabolism protein (PhnH) YPO3459 PF05861 Bacterial phosphonate metabolism protein (PhnI) YPO3460 PF06007 Phosphonate metabolism protein PhnJ YPO3461 PF00005 ABC transporter YPO3462 PF00005 ABC transporter YPO3463 PF07969 Amidohydrolase family YPO3465 PF12706 Beta-lactamase superfamily domain YPO3466 PF13460 NAD(P)H-binding YPO3469 PF17912 MalK OB fold domain YPO3469 PF00005 ABC transporter YPO3469 PF03459 TOBE domain YPO3470 PF00528 Binding-protein-dependent transport system inner membrane component YPO3472 PF13416 Bacterial extracellular solute-binding protein YPO3475 PF01541 GIY-YIG catalytic domain YPO3476 PF13508 Acetyltransferase (GNAT) domain YPO3481 PF02321 Outer membrane efflux protein YPO3481 PF08139 Prokaryotic membrane lipoprotein lipid attachment site YPO3482 PF00873 AcrB/AcrD/AcrF family YPO3483 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion YPO3483 PF00529 HlyD membrane-fusion protein of T1SS YPO3484 PF00296 Luciferase-like monooxygenase YPO3485 PF01381 Helix-turn-helix YPO3488 PF12343 Cold shock protein DEAD box A YPO3488 PF03880 DbpA RNA binding domain YPO3488 PF00270 DEAD/DEAH box helicase YPO3488 PF00271 Helicase conserved C-terminal domain YPO3489 PF07719 Tetratricopeptide repeat YPO3489 PF13181 Tetratricopeptide repeat YPO3490 PF03725 3' exoribonuclease family, domain 2 YPO3490 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain YPO3490 PF01138 3' exoribonuclease family, domain 1 YPO3490 PF00575 S1 RNA binding domain YPO3490 PF00013 KH domain YPO3491 PF00665 Integrase core domain YPO3491 PF13276 HTH-like domain YPO3491 PF13333 Integrase core domain YPO3493 PF00312 Ribosomal protein S15 YPO3494 PF01509 TruB family pseudouridylate synthase (N terminal domain) YPO3494 PF16198 tRNA pseudouridylate synthase B C-terminal domain YPO3494 PF09157 Pseudouridine synthase II TruB, C-terminal YPO3495 PF02033 Ribosome-binding factor A YPO3496 PF00009 Elongation factor Tu GTP binding domain YPO3496 PF04760 Translation initiation factor IF-2, N-terminal region YPO3496 PF03144 Elongation factor Tu domain 2 YPO3496 PF08364 Bacterial translation initiation factor IF-2 associated region YPO3496 PF11987 Translation-initiation factor 2 YPO3497 PF13184 NusA-like KH domain YPO3497 PF08529 NusA N-terminal domain YPO3497 PF00575 S1 RNA binding domain YPO3498 PF17384 RimP C-terminal SH3 domain YPO3498 PF02576 RimP N-terminal domain YPO3499 PF03840 Preprotein translocase SecG subunit YPO3500 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II YPO3500 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I YPO3500 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain YPO3500 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III YPO3501 PF00809 Pterin binding enzyme YPO3502 PF06480 FtsH Extracellular YPO3502 PF01434 Peptidase family M41 YPO3502 PF17862 AAA+ lid domain YPO3502 PF00004 ATPase family associated with various cellular activities (AAA) YPO3503 PF01728 FtsJ-like methyltransferase YPO3504 PF01985 CRS1 / YhbY (CRM) domain YPO3505 PF03449 Transcription elongation factor, N-terminal YPO3505 PF01272 Transcription elongation factor, GreA/GreB, C-term YPO3506 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family YPO3507 PF00072 Response regulator receiver domain YPO3507 PF00486 Transcriptional regulatory protein, C terminal YPO3508 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPO3508 PF00512 His Kinase A (phospho-acceptor) domain YPO3508 PF00672 HAMP domain YPO3509 PF01926 50S ribosome-binding GTPase YPO3509 PF01018 GTP1/OBG YPO3510 PF00892 EamA-like transporter family YPO3511 PF01016 Ribosomal L27 protein YPO3512 PF00829 Ribosomal prokaryotic L21 protein YPO3513 PF00348 Polyprenyl synthetase YPO3516 PF00056 lactate/malate dehydrogenase, NAD binding domain YPO3516 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain YPO3517 PF02863 Arginine repressor, C-terminal domain YPO3517 PF01316 Arginine repressor, DNA binding domain YPO3519 PF01225 Mur ligase family, catalytic domain YPO3519 PF02875 Mur ligase family, glutamate ligase domain YPO3519 PF08245 Mur ligase middle domain YPO3520 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain YPO3521 PF00719 Inorganic pyrophosphatase YPO3522 PF06094 Gamma-glutamyl cyclotransferase, AIG2-like YPO3523 PF04357 TamB, inner membrane protein subunit of TAM complex YPO3524 PF17243 POTRA domain TamA domain 1 YPO3524 PF01103 Surface antigen YPO3524 PF07244 Surface antigen variable number repeat YPO3525 PF01625 Peptide methionine sulfoxide reductase YPO3526 PF00571 CBS domain YPO3526 PF03471 Transporter associated domain YPO3526 PF01595 Cyclin M transmembrane N-terminal domain YPO3527 PF06526 Protein of unknown function (DUF1107) YPO3528 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) YPO3529 PF00459 Inositol monophosphatase family YPO3530 PF02872 5'-nucleotidase, C-terminal domain YPO3530 PF00149 Calcineurin-like phosphoesterase YPO3531 PF04405 Domain of Unknown function (DUF542) YPO3531 PF01814 Hemerythrin HHE cation binding domain YPO3532 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase YPO3532 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase YPO3533 PF08525 Opacity-associated protein A N-terminal motif YPO3533 PF04225 Opacity-associated protein A LysM-like domain YPO3535 PF01797 Transposase IS200 like YPO3536 PF03948 Ribosomal protein L9, C-terminal domain YPO3536 PF01281 Ribosomal protein L9, N-terminal domain YPO3537 PF01084 Ribosomal protein S18 YPO3538 PF00436 Single-strand binding protein family YPO3539 PF01250 Ribosomal protein S6 YPO3542 PF00665 Integrase core domain YPO3542 PF02796 Helix-turn-helix domain of resolvase YPO3543 PF01695 IstB-like ATP binding protein YPO3545 PF03466 LysR substrate binding domain YPO3545 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPO3546 PF02678 Pirin YPO3546 PF17954 Quercetinase C-terminal cupin domain YPO3547 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases YPO3548 PF04348 LppC putative lipoprotein YPO3549 PF02021 Uncharacterised protein family UPF0102 YPO3550 PF13580 SIS domain YPO3551 PF04972 BON domain YPO3552 PF00912 Transglycosylase YPO3555 PF00072 Response regulator receiver domain YPO3555 PF00989 PAS fold YPO3555 PF01627 Hpt domain YPO3555 PF18415 Histidine kinase receptor ArcB trans-membrane domain YPO3555 PF00512 His Kinase A (phospho-acceptor) domain YPO3555 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPO3556 PF04055 Radical SAM superfamily YPO3556 PF16199 Radical_SAM C-terminal domain YPO3557 PF01493 GXGXG motif YPO3557 PF01645 Conserved region in glutamate synthase YPO3557 PF04898 Glutamate synthase central domain YPO3557 PF00310 Glutamine amidotransferases class-II YPO3558 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster YPO3558 PF07992 Pyridine nucleotide-disulphide oxidoreductase YPO3560 PF04386 Stringent starvation protein B YPO3561 PF00043 Glutathione S-transferase, C-terminal domain YPO3561 PF02798 Glutathione S-transferase, N-terminal domain YPO3562 PF00380 Ribosomal protein S9/S16 YPO3563 PF00572 Ribosomal protein L13 YPO3564 PF03969 AFG1-like ATPase YPO3565 PF06295 Protein of unknown function (DUF1043) YPO3566 PF13180 PDZ domain YPO3566 PF00595 PDZ domain YPO3567 PF01797 Transposase IS200 like YPO3568 PF13180 PDZ domain YPO3569 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) YPO3570 PF01722 BolA-like protein YPO3571 PF13466 STAS domain YPO3572 PF05494 MlaC protein YPO3573 PF02470 MlaD protein YPO3574 PF02405 Permease MlaE YPO3575 PF00005 ABC transporter YPO3576 PF01699 Sodium/calcium exchanger protein YPO3577 PF00571 CBS domain YPO3577 PF01380 SIS domain YPO3579 PF06835 Lipopolysaccharide-assembly, LptC-related YPO3580 PF03968 OstA-like protein YPO3581 PF12399 Branched-chain amino acid ATP-binding cassette transporter YPO3581 PF00005 ABC transporter YPO3582 PF00309 Sigma-54 factor, Activator interacting domain (AID) YPO3582 PF04963 Sigma-54 factor, core binding domain YPO3582 PF04552 Sigma-54, DNA binding domain YPO3585 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 YPO3586 PF03668 P-loop ATPase protein family YPO3587 PF00381 PTS HPr component phosphorylation site YPO3588 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain YPO3588 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain YPO3589 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain YPO3589 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain YPO3590 PF01042 Endoribonuclease L-PSP YPO3591 PF00665 Integrase core domain YPO3591 PF02796 Helix-turn-helix domain of resolvase YPO3592 PF01695 IstB-like ATP binding protein YPO3599 PF10431 C-terminal, D2-small domain, of ClpB protein YPO3599 PF17871 AAA lid domain YPO3599 PF07724 AAA domain (Cdc48 subfamily) YPO3599 PF00004 ATPase family associated with various cellular activities (AAA) YPO3606 PF04717 Type VI secretion system, phage-baseplate injector YPO3609 PF14220 Domain of unknown function (DUF4329) YPO3609 PF03527 RHS protein YPO3609 PF05593 RHS Repeat YPO3613 PF04717 Type VI secretion system, phage-baseplate injector YPO3615 PF03527 RHS protein YPO3615 PF05593 RHS Repeat YPO3618 PF01408 Oxidoreductase family, NAD-binding Rossmann fold YPO3618 PF02894 Oxidoreductase family, C-terminal alpha/beta domain YPO3619 PF02311 AraC-like ligand binding domain YPO3619 PF12833 Helix-turn-helix domain YPO3620 PF05025 RbsD / FucU transport protein family YPO3621 PF00294 pfkB family carbohydrate kinase YPO3623 PF03358 NADPH-dependent FMN reductase YPO3624 PF09084 NMT1/THI5 like YPO3625 PF00296 Luciferase-like monooxygenase YPO3626 PF00528 Binding-protein-dependent transport system inner membrane component YPO3627 PF00005 ABC transporter YPO3628 PF04221 RelB antitoxin YPO3629 PF00860 Permease family YPO3630 PF00999 Sodium/hydrogen exchanger family YPO3632 PF03279 Bacterial lipid A biosynthesis acyltransferase YPO3634 PF00005 ABC transporter YPO3635 PF02653 Branched-chain amino acid transport system / permease component YPO3637 PF02782 FGGY family of carbohydrate kinases, C-terminal domain YPO3637 PF00370 FGGY family of carbohydrate kinases, N-terminal domain YPO3638 PF00571 CBS domain YPO3638 PF01380 SIS domain YPO3639 PF02798 Glutathione S-transferase, N-terminal domain YPO3642 PF01797 Transposase IS200 like YPO3643 PF00313 'Cold-shock' DNA-binding domain YPO3644 PF00313 'Cold-shock' DNA-binding domain YPO3646 PF05433 Glycine zipper 2TM domain YPO3647 PF00753 Metallo-beta-lactamase superfamily YPO3648 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase YPO3648 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase YPO3649 PF02627 Carboxymuconolactone decarboxylase family YPO3650 PF07690 Major Facilitator Superfamily YPO3654 PF02954 Bacterial regulatory protein, Fis family YPO3655 PF01207 Dihydrouridine synthase (Dus) YPO3657 PF00474 Sodium:solute symporter family YPO3657a PF06196 Protein of unknown function (DUF997) YPO3657b PF06196 Protein of unknown function (DUF997) YPO3658 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain YPO3658 PF00289 Biotin carboxylase, N-terminal domain YPO3658 PF02785 Biotin carboxylase C-terminal domain YPO3659 PF00364 Biotin-requiring enzyme YPO3660 PF01220 Dehydroquinase class II YPO3661 PF01794 Ferric reductase like transmembrane component YPO3662 PF00174 Oxidoreductase molybdopterin binding domain YPO3663 PF00107 Zinc-binding dehydrogenase YPO3663 PF08240 Alcohol dehydrogenase GroES-like domain YPO3664 PF00563 EAL domain YPO3664 PF17157 Gammaproteobacterial periplasmic sensor domain YPO3664 PF00990 Diguanylate cyclase, GGDEF domain YPO3666 PF04085 rod shape-determining protein MreC YPO3667 PF04093 rod shape-determining protein MreD YPO3668 PF02545 Maf-like protein YPO3669 PF10150 Ribonuclease E/G family YPO3669 PF00575 S1 RNA binding domain YPO3670 PF13116 Protein of unknown function YPO3670 PF13502 AsmA-like C-terminal region YPO3671 PF00795 Carbon-nitrogen hydrolase YPO3672 PF01523 Putative modulator of DNA gyrase YPO3673 PF18807 Tripartite Tc toxins repeat YPO3673 PF14431 YwqJ-like deaminase YPO3674 PF05785 Rho-activating domain of cytotoxic necrotizing factor YPO3674 PF18807 Tripartite Tc toxins repeat YPO3678 PF12255 Insecticide toxin TcdB middle/C-terminal region YPO3678 PF03534 Salmonella virulence plasmid 65kDa B protein YPO3678 PF12256 Insecticide toxin TcdB middle/N-terminal region YPO3682 PF03466 LysR substrate binding domain YPO3682 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPO3683 PF03466 LysR substrate binding domain YPO3683 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPO3684 PF07869 Protein of unknown function (DUF1656) YPO3685 PF13533 Biotin-lipoyl like YPO3686 PF04632 Fusaric acid resistance protein family YPO3690 PF01337 Barstar (barnase inhibitor) YPO3691 PF04751 Protein of unknown function (DUF615) YPO3692 PF01523 Putative modulator of DNA gyrase YPO3694 PF07361 Cytochrome b562 YPO3695 PF01272 Transcription elongation factor, GreA/GreB, C-term YPO3695 PF14760 Rnk N-terminus YPO3696 PF00128 Alpha amylase, catalytic domain YPO3696 PF11941 Domain of unknown function (DUF3459) YPO3697 PF00367 phosphotransferase system, EIIB YPO3697 PF02378 Phosphotransferase system, EIIC YPO3698 PF00356 Bacterial regulatory proteins, lacI family YPO3700 PF01695 IstB-like ATP binding protein YPO3701 PF00665 Integrase core domain YPO3701 PF02796 Helix-turn-helix domain of resolvase YPO3703 PF13276 HTH-like domain YPO3703 PF00665 Integrase core domain YPO3703 PF13333 Integrase core domain YPO3708 PF05638 Type VI secretion system effector, Hcp YPO3710 PF07148 Maltose operon periplasmic protein precursor (MalM) YPO3711 PF02264 LamB porin YPO3712 PF17912 MalK OB fold domain YPO3712 PF00005 ABC transporter YPO3714 PF01547 Bacterial extracellular solute-binding protein YPO3715 PF14785 Maltose transport system permease protein MalF P2 domain YPO3715 PF00528 Binding-protein-dependent transport system inner membrane component YPO3716 PF00528 Binding-protein-dependent transport system inner membrane component YPO3717 PF06146 Phosphate-starvation-inducible E YPO3718 PF00342 Phosphoglucose isomerase YPO3719 PF00696 Amino acid kinase family YPO3719 PF01842 ACT domain YPO3720 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB YPO3720 PF17287 POTRA domain YPO3720 PF08479 POTRA domain, ShlB-type YPO3721 PF13332 Hemagglutinin repeat YPO3721 PF05860 haemagglutination activity domain YPO3722 PF02607 B12 binding domain YPO3722 PF00809 Pterin binding enzyme YPO3722 PF02310 B12 binding domain YPO3722 PF02574 Homocysteine S-methyltransferase YPO3722 PF02965 Vitamin B12 dependent methionine synthase, activation domain YPO3724 PF06315 Isocitrate dehydrogenase kinase/phosphatase (AceK) YPO3725 PF00463 Isocitrate lyase family YPO3726 PF01274 Malate synthase YPO3727 PF04204 Homoserine O-succinyltransferase YPO3728 PF01808 AICARFT/IMPCHase bienzyme YPO3728 PF02142 MGS-like domain YPO3729 PF02843 Phosphoribosylglycinamide synthetase, C domain YPO3729 PF02844 Phosphoribosylglycinamide synthetase, N domain YPO3729 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain YPO3730 PF07356 Protein of unknown function (DUF1481) YPO3731 PF00216 Bacterial DNA-binding protein YPO3732 PF04222 Protein of unknown function (DUF416) YPO3733 PF04493 Endonuclease V YPO3734 PF01208 Uroporphyrinogen decarboxylase (URO-D) YPO3736 PF00293 NUDIX domain YPO3736 PF09297 NADH pyrophosphatase zinc ribbon domain YPO3737 PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ YPO3739 PF01964 Radical SAM ThiC family YPO3739 PF13667 ThiC-associated domain YPO3740 PF02581 Thiamine monophosphate synthase YPO3741 PF00899 ThiF family YPO3742 PF05690 Thiazole biosynthesis protein ThiG YPO3743 PF06968 Biotin and Thiamin Synthesis associated domain YPO3743 PF04055 Radical SAM superfamily YPO3745 PF01797 Transposase IS200 like YPO3746 PF04998 RNA polymerase Rpb1, domain 5 YPO3746 PF05000 RNA polymerase Rpb1, domain 4 YPO3746 PF04983 RNA polymerase Rpb1, domain 3 YPO3746 PF00623 RNA polymerase Rpb1, domain 2 YPO3746 PF04997 RNA polymerase Rpb1, domain 1 YPO3747 PF04563 RNA polymerase beta subunit YPO3747 PF04565 RNA polymerase Rpb2, domain 3 YPO3747 PF04560 RNA polymerase Rpb2, domain 7 YPO3747 PF00562 RNA polymerase Rpb2, domain 6 YPO3747 PF04561 RNA polymerase Rpb2, domain 2 YPO3747 PF10385 RNA polymerase beta subunit external 1 domain YPO3748 PF00542 Ribosomal protein L7/L12 C-terminal domain YPO3748 PF16320 Ribosomal protein L7/L12 dimerisation domain YPO3749 PF00466 Ribosomal protein L10 YPO3750 PF00687 Ribosomal protein L1p/L10e family YPO3751 PF00298 Ribosomal protein L11, RNA binding domain YPO3751 PF03946 Ribosomal protein L11, N-terminal domain YPO3752 PF02357 Transcription termination factor nusG YPO3752 PF00467 KOW motif YPO3753 PF00584 SecE/Sec61-gamma subunits of protein translocation complex YPO3754 PF03144 Elongation factor Tu domain 2 YPO3754 PF03143 Elongation factor Tu C-terminal domain YPO3754 PF00009 Elongation factor Tu GTP binding domain YPO3755 PF01695 IstB-like ATP binding protein YPO3756 PF00665 Integrase core domain YPO3756 PF02796 Helix-turn-helix domain of resolvase YPO3757 PF13673 Acetyltransferase (GNAT) domain YPO3758 PF00485 Phosphoribulokinase / Uridine kinase family YPO3759 PF02237 Biotin protein ligase C terminal domain YPO3759 PF03099 Biotin/lipoate A/B protein ligase family YPO3759 PF08279 HTH domain YPO3760 PF01565 FAD binding domain YPO3760 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain YPO3761 PF12724 Flavodoxin domain YPO3762 PF02386 Cation transport protein YPO3764 PF01797 Transposase IS200 like YPO3765 PF00557 Metallopeptidase family M24 YPO3766 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain YPO3766 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain YPO3766 PF00378 Enoyl-CoA hydratase/isomerase YPO3767 PF00108 Thiolase, N-terminal domain YPO3767 PF02803 Thiolase, C-terminal domain YPO3768 PF00175 Oxidoreductase NAD-binding domain YPO3768 PF00970 Oxidoreductase FAD-binding domain YPO3769 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase YPO3770 PF02357 Transcription termination factor nusG YPO3771 PF00490 Delta-aminolevulinic acid dehydratase YPO3773 PF01695 IstB-like ATP binding protein YPO3774 PF00665 Integrase core domain YPO3774 PF02796 Helix-turn-helix domain of resolvase YPO3776 PF00902 Sec-independent protein translocase protein (TatC) YPO3778 PF02416 mttA/Hcf106 family YPO3779 PF03109 ABC1 family YPO3780 PF02036 SCP-2 sterol transfer family YPO3781 PF01209 ubiE/COQ5 methyltransferase family YPO3782 PF02646 RmuC family YPO3783 PF09335 SNARE associated Golgi protein YPO3784 PF02554 Carbon starvation protein CstA YPO3784 PF13722 5TM C-terminal transporter carbon starvation CstA YPO3786 PF01048 Phosphorylase superfamily YPO3787 PF01738 Dienelactone hydrolase family YPO3788 PF08267 Cobalamin-independent synthase, N-terminal domain YPO3788 PF01717 Cobalamin-independent synthase, Catalytic domain YPO3789 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPO3789 PF03466 LysR substrate binding domain YPO3790 PF00892 EamA-like transporter family YPO3791 PF03547 Membrane transport protein YPO3792 PF03009 Glycerophosphoryl diester phosphodiesterase family YPO3793 PF17912 MalK OB fold domain YPO3793 PF00005 ABC transporter YPO3794 PF00528 Binding-protein-dependent transport system inner membrane component YPO3795 PF00528 Binding-protein-dependent transport system inner membrane component YPO3796 PF13416 Bacterial extracellular solute-binding protein YPO3804 PF00005 ABC transporter YPO3805 PF00005 ABC transporter YPO3805 PF12399 Branched-chain amino acid ATP-binding cassette transporter YPO3806 PF11862 Domain of unknown function (DUF3382) YPO3806 PF02653 Branched-chain amino acid transport system / permease component YPO3807 PF02653 Branched-chain amino acid transport system / permease component YPO3808 PF13458 Periplasmic binding protein YPO3809 PF12568 Acetyltransferase (GNAT) domain, PanZ YPO3810 PF01797 Transposase IS200 like YPO3811 PF04545 Sigma-70, region 4 YPO3811 PF04542 Sigma-70 region 2 YPO3811 PF00140 Sigma-70 factor, region 1.2 YPO3812 PF02687 FtsX-like permease family YPO3812 PF18075 FtsX extracellular domain YPO3813 PF00005 ABC transporter YPO3814 PF02881 SRP54-type protein, helical bundle domain YPO3814 PF02881 SRP54-type protein, helical bundle domain YPO3814 PF00448 SRP54-type protein, GTPase domain YPO3814 PF00448 SRP54-type protein, GTPase domain YPO3816a PF06611 Protein of unknown function (DUF1145) YPO3819 PF07947 YhhN family YPO3820 PF00403 Heavy-metal-associated domain YPO3821 PF01206 Sulfurtransferase TusA YPO3822 PF02592 Putative vitamin uptake transporter YPO3823 PF08786 DcrB YPO3824 PF13183 4Fe-4S dicluster domain YPO3824 PF02754 Cysteine-rich domain YPO3825 PF00890 FAD binding domain YPO3826 PF01266 FAD dependent oxidoreductase YPO3826 PF04324 BFD-like [2Fe-2S] binding domain YPO3827 PF03009 Glycerophosphoryl diester phosphodiesterase family YPO3830 PF12146 Serine aminopeptidase, S33 YPO3831 PF01810 LysE type translocator YPO3832 PF01810 LysE type translocator YPO3833 PF09382 RQC domain YPO3833 PF16124 RecQ zinc-binding YPO3833 PF00570 HRDC domain YPO3833 PF00271 Helicase conserved C-terminal domain YPO3833 PF00270 DEAD/DEAH box helicase YPO3834 PF02253 Phospholipase A1 YPO3835 PF03061 Thioesterase superfamily YPO3836 PF00892 EamA-like transporter family YPO3837 PF01544 CorA-like Mg2+ transporter protein YPO3838 PF09370 Phosphoenolpyruvate hydrolase-like YPO3841 PF13361 UvrD-like helicase C-terminal domain YPO3841 PF00580 UvrD/REP helicase N-terminal domain YPO3842 PF13419 Haloacid dehalogenase-like hydrolase YPO3843 PF02899 Phage integrase, N-terminal SAM-like domain YPO3843 PF00589 Phage integrase family YPO3844 PF04340 Protein of unknown function, DUF484 YPO3845 PF01678 Diaminopimelate epimerase YPO3846 PF13627 Prokaryotic lipoprotein-attachment site YPO3847 PF01491 Frataxin-like domain YPO3848 PF01295 Adenylate cyclase, class-I YPO3848 PF12633 Adenylate cyclase NT domain YPO3849 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain YPO3849 PF03900 Porphobilinogen deaminase, C-terminal domain YPO3850 PF02602 Uroporphyrinogen-III synthase HemD YPO3851 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase YPO3852 PF07219 HemY protein N-terminus YPO3852 PF07719 Tetratricopeptide repeat YPO3853 PF01797 Transposase IS200 like YPO3854 PF00324 Amino acid permease YPO3855 PF03808 Glycosyl transferase WecB/TagA/CpsF family YPO3856 PF06899 WzyE protein, O-antigen assembly polymerase YPO3857 PF07429 4-alpha-L-fucosyltransferase glycosyl transferase group 56 YPO3858 PF01943 Polysaccharide biosynthesis protein YPO3859 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family YPO3861 PF00483 Nucleotidyl transferase YPO3862 PF16363 GDP-mannose 4,6 dehydratase YPO3863 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain YPO3863 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain YPO3863 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain YPO3864 PF02350 UDP-N-acetylglucosamine 2-epimerase YPO3865 PF02706 Chain length determinant protein YPO3866 PF00953 Glycosyl transferase family 4 YPO3867 PF07498 Rho termination factor, N-terminal domain YPO3867 PF07497 Rho termination factor, RNA-binding domain YPO3867 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain YPO3868 PF00085 Thioredoxin YPO3869 PF00271 Helicase conserved C-terminal domain YPO3869 PF00270 DEAD/DEAH box helicase YPO3872 PF13361 UvrD-like helicase C-terminal domain YPO3872 PF00580 UvrD/REP helicase N-terminal domain YPO3875 PF00872 Transposase, Mutator family YPO3878 PF02753 Pili assembly chaperone PapD, C-terminal domain YPO3878 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain YPO3879 PF13953 PapC C-terminal domain YPO3879 PF13954 PapC N-terminal domain YPO3879 PF00577 Outer membrane usher protein YPO3881 PF02753 Pili assembly chaperone PapD, C-terminal domain YPO3881 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain YPO3883 PF01320 Colicin immunity protein / pyocin immunity protein YPO3888 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain YPO3888 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain YPO3889 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPO3889 PF03466 LysR substrate binding domain YPO3896 PF00585 C-terminal regulatory domain of Threonine dehydratase YPO3896 PF00291 Pyridoxal-phosphate dependent enzyme YPO3897 PF00920 Dehydratase family YPO3899 PF01063 Amino-transferase class IV YPO3901 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain YPO3901 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain YPO3901 PF00205 Thiamine pyrophosphate enzyme, central domain YPO3902 PF13335 Magnesium chelatase, subunit ChlI C-terminal YPO3902 PF01078 Magnesium chelatase, subunit ChlI YPO3903 PF04219 Protein of unknown function, DUF YPO3904 PF03466 LysR substrate binding domain YPO3904 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPO3905 PF02653 Branched-chain amino acid transport system / permease component YPO3906 PF02653 Branched-chain amino acid transport system / permease component YPO3907 PF00005 ABC transporter YPO3908 PF13407 Periplasmic binding protein domain YPO3909 PF01177 Asp/Glu/Hydantoin racemase YPO3910 PF07715 TonB-dependent Receptor Plug Domain YPO3910 PF00593 TonB dependent receptor YPO3911 PF05958 tRNA (Uracil-5-)-methyltransferase YPO3912 PF07226 Protein of unknown function (DUF1422) YPO3913 PF00440 Bacterial regulatory proteins, tetR family YPO3914 PF07992 Pyridine nucleotide-disulphide oxidoreductase YPO3914 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain YPO3915 PF03466 LysR substrate binding domain YPO3915 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPO3916 PF00462 Glutaredoxin YPO3916 PF08534 Redoxin YPO3917 PF07992 Pyridine nucleotide-disulphide oxidoreductase YPO3917 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain YPO3918 PF03544 Gram-negative bacterial TonB protein C-terminal YPO3919 PF00529 HlyD membrane-fusion protein of T1SS YPO3920 PF00664 ABC transporter transmembrane region YPO3920 PF00005 ABC transporter YPO3921 PF00664 ABC transporter transmembrane region YPO3921 PF00005 ABC transporter YPO3923 PF00593 TonB dependent receptor YPO3923 PF07715 TonB-dependent Receptor Plug Domain YPO3924 PF00206 Lyase YPO3924 PF14698 Argininosuccinate lyase C-terminal YPO3925 PF00696 Amino acid kinase family YPO3927 PF01118 Semialdehyde dehydrogenase, NAD binding domain YPO3927 PF02774 Semialdehyde dehydrogenase, dimerisation domain YPO3928 PF01546 Peptidase family M20/M25/M40 YPO3928 PF07687 Peptidase dimerisation domain YPO3929 PF00311 Phosphoenolpyruvate carboxylase YPO3932 PF00665 Integrase core domain YPO3932 PF13333 Integrase core domain YPO3932 PF13276 HTH-like domain YPO3937 PF16901 C-terminal domain of alpha-glycerophosphate oxidase YPO3937 PF01266 FAD dependent oxidoreductase YPO3938 PF00343 Carbohydrate phosphorylase YPO3939 PF00534 Glycosyl transferases group 1 YPO3939 PF08323 Starch synthase catalytic domain YPO3940 PF00483 Nucleotidyl transferase YPO3941 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) YPO3941 PF18390 Glycogen debranching enzyme C-terminal domain YPO3941 PF00128 Alpha amylase, catalytic domain YPO3942 PF02806 Alpha amylase, C-terminal all-beta domain YPO3942 PF00128 Alpha amylase, catalytic domain YPO3942 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) YPO3943 PF07694 5TMR of 5TMR-LYT YPO3943 PF06580 Histidine kinase YPO3944 PF11924 Inverse autotransporter, beta-domain YPO3944 PF09134 Invasin, domain 3 YPO3944 PF07979 Intimin C-type lectin domain YPO3944 PF02369 Bacterial Ig-like domain (group 1) YPO3949 PF01118 Semialdehyde dehydrogenase, NAD binding domain YPO3949 PF02774 Semialdehyde dehydrogenase, dimerisation domain YPO3950 PF01914 MarC family integral membrane protein YPO3953 PF01202 Shikimate kinase YPO3954 PF02447 GntP family permease YPO3955 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family YPO3955 PF00356 Bacterial regulatory proteins, lacI family YPO3956 PF02678 Pirin YPO3956 PF17954 Quercetinase C-terminal cupin domain YPO3958 PF00486 Transcriptional regulatory protein, C terminal YPO3958 PF00072 Response regulator receiver domain YPO3960 PF01116 Fructose-bisphosphate aldolase class-II YPO3962 PF13407 Periplasmic binding protein domain YPO3963 PF02653 Branched-chain amino acid transport system / permease component YPO3964 PF00005 ABC transporter YPO3965 PF00512 His Kinase A (phospho-acceptor) domain YPO3965 PF13188 PAS domain YPO3965 PF08448 PAS fold YPO3965 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPO3965 PF00072 Response regulator receiver domain YPO3967 PF01384 Phosphate transporter family YPO3968 PF01797 Transposase IS200 like YPO3969 PF10625 Universal stress protein B (UspB) YPO3970 PF00582 Universal stress protein family YPO3971 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase YPO3971 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain YPO3973 PF00413 Matrixin YPO3973 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) YPO3973 PF08548 Peptidase M10 serralysin C terminal YPO3974 PF04445 Putative SAM-dependent methyltransferase YPO3975 PF01432 Peptidase family M3 YPO3976 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ YPO3977 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain YPO3977 PF07992 Pyridine nucleotide-disulphide oxidoreductase YPO3978 PF13556 PucR C-terminal helix-turn-helix domain YPO3978 PF05651 Putative sugar diacid recognition YPO3978 PF17853 GGDEF-like domain YPO3979 PF02447 GntP family permease YPO3980 PF02595 Glycerate kinase family YPO3985 PF03631 Virulence factor BrkB YPO3986 PF02611 CDP-diacylglycerol pyrophosphatase YPO3987 PF05170 AsmA family YPO3988 PF00563 EAL domain YPO3989 PF01361 Tautomerase enzyme YPO3990 PF00294 pfkB family carbohydrate kinase YPO3991 PF00675 Insulinase (Peptidase family M16) YPO3991 PF05193 Peptidase M16 inactive domain YPO3992 PF00375 Sodium:dicarboxylate symporter family YPO3994 PF06917 Periplasmic pectate lyase YPO3995 PF06178 Oligogalacturonate-specific porin protein (KdgM) YPO3996 PF17154 Gammaproteobacterial periplasmic sensor domain YPO3996 PF00990 Diguanylate cyclase, GGDEF domain YPO3996 PF00563 EAL domain YPO3996 PF00672 HAMP domain YPO3999 PF08352 Oligopeptide/dipeptide transporter, C-terminal region YPO3999 PF00005 ABC transporter YPO4000 PF00005 ABC transporter YPO4000 PF08352 Oligopeptide/dipeptide transporter, C-terminal region YPO4001 PF00528 Binding-protein-dependent transport system inner membrane component YPO4001 PF12911 N-terminal TM domain of oligopeptide transport permease C YPO4002 PF00528 Binding-protein-dependent transport system inner membrane component YPO4003 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle YPO4005 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB YPO4005 PF08479 POTRA domain, ShlB-type YPO4005 PF17287 POTRA domain YPO4006 PF05860 haemagglutination activity domain YPO4006 PF13332 Hemagglutinin repeat YPO4006 PF05594 Haemagluttinin repeat YPO4006 PF04829 Pre-toxin domain with VENN motif YPO4007 PF07690 Major Facilitator Superfamily YPO4009 PF01695 IstB-like ATP binding protein YPO4010 PF00665 Integrase core domain YPO4010 PF02796 Helix-turn-helix domain of resolvase YPO4012 PF00072 Response regulator receiver domain YPO4012 PF00196 Bacterial regulatory proteins, luxR family YPO4013 PF08019 Phosphoethanolamine transferase EptA/EptB YPO4013 PF00884 Sulfatase YPO4014 PF12146 Serine aminopeptidase, S33 YPO4015 PF00324 Amino acid permease YPO4016 PF00221 Aromatic amino acid lyase YPO4017 PF01175 Urocanase Rossmann-like domain YPO4017 PF17391 Urocanase N-terminal domain YPO4017 PF17392 Urocanase C-terminal domain YPO4018 PF00291 Pyridoxal-phosphate dependent enzyme YPO4019 PF00156 Phosphoribosyl transferase domain YPO4022 PF01497 Periplasmic binding protein YPO4023 PF01032 FecCD transport family YPO4024 PF01032 FecCD transport family YPO4025 PF00005 ABC transporter YPO4031 PF04606 Ogr/Delta-like zinc finger YPO4033 PF00589 Phage integrase family YPO4033 PF14659 Phage integrase, N-terminal SAM-like domain YPO4033 PF13356 Arm DNA-binding domain YPO4034 PF12833 Helix-turn-helix domain YPO4035 PF02653 Branched-chain amino acid transport system / permease component YPO4036 PF00005 ABC transporter YPO4037 PF13407 Periplasmic binding protein domain YPO4039 PF00370 FGGY family of carbohydrate kinases, N-terminal domain YPO4039 PF02782 FGGY family of carbohydrate kinases, C-terminal domain YPO4041 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain YPO4041 PF02753 Pili assembly chaperone PapD, C-terminal domain YPO4044 PF00419 Fimbrial protein YPO4045 PF01757 Acyltransferase family YPO4047 PF13333 Integrase core domain YPO4047 PF00665 Integrase core domain YPO4047 PF13276 HTH-like domain YPO4048 PF07690 Major Facilitator Superfamily YPO4051 PF13700 Domain of unknown function (DUF4158) YPO4051 PF01526 Tn3 transposase DDE domain YPO4054 PF12390 Selenocysteine synthase N terminal YPO4054 PF03841 L-seryl-tRNA selenium transferase YPO4055 PF04216 Protein involved in formate dehydrogenase formation YPO4056 PF01292 Prokaryotic cytochrome b561 YPO4057 PF13247 4Fe-4S dicluster domain YPO4057 PF09163 Formate dehydrogenase N, transmembrane YPO4060 PF02634 FdhD/NarQ family YPO4061 PF02777 Iron/manganese superoxide dismutases, C-terminal domain YPO4061 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain YPO4062 PF00672 HAMP domain YPO4062 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain YPO4062 PF02203 Tar ligand binding domain homologue YPO4065 PF10928 Protein of unknown function (DUF2810) YPO4066 PF05068 Mannitol repressor YPO4067 PF08125 Mannitol dehydrogenase C-terminal domain YPO4067 PF01232 Mannitol dehydrogenase Rossmann domain YPO4068 PF02378 Phosphotransferase system, EIIC YPO4068 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit YPO4068 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 YPO4070 PF11254 Protein of unknown function (DUF3053) YPO4071 PF05746 DALR anticodon binding domain YPO4071 PF02092 Glycyl-tRNA synthetase beta subunit YPO4072 PF02091 Glycyl-tRNA synthetase alpha subunit YPO4074 PF03352 Methyladenine glycosylase YPO4076 PF13488 Glycine zipper YPO4076 PF00691 OmpA family YPO4078 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain YPO4078 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain YPO4080 PF00128 Alpha amylase, catalytic domain YPO4082 PF00155 Aminotransferase class I and II YPO4083 PF02080 TrkA-C domain YPO4083 PF06826 Predicted Permease Membrane Region YPO4084 PF00011 Hsp20/alpha crystallin family YPO4085 PF00011 Hsp20/alpha crystallin family YPO4086 PF07119 Protein of unknown function (DUF1375) YPO4089 PF00291 Pyridoxal-phosphate dependent enzyme YPO4089 PF13291 ACT domain YPO4090 PF02423 Ornithine cyclodeaminase/mu-crystallin family YPO4092 PF13276 HTH-like domain YPO4092 PF00665 Integrase core domain YPO4092 PF13333 Integrase core domain YPO4094 PF18053 DNA gyrase B subunit insert domain YPO4094 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPO4094 PF00986 DNA gyrase B subunit, carboxyl terminus YPO4094 PF01751 Toprim domain YPO4094 PF00204 DNA gyrase B YPO4095 PF02463 RecF/RecN/SMC N terminal domain YPO4096 PF00712 DNA polymerase III beta subunit, N-terminal domain YPO4096 PF02767 DNA polymerase III beta subunit, central domain YPO4096 PF02768 DNA polymerase III beta subunit, C-terminal domain YPO4097 PF08299 Bacterial dnaA protein helix-turn-helix YPO4097 PF00308 Bacterial dnaA protein YPO4097 PF11638 DnaA N-terminal domain YPO4100 PF00468 Ribosomal protein L34 YPO4101 PF00825 Ribonuclease P YPO4102 PF14849 YidC periplasmic domain YPO4102 PF02096 60Kd inner membrane protein YPO4103 PF01926 50S ribosome-binding GTPase YPO4103 PF10396 GTP-binding protein TrmE N-terminus YPO4103 PF12631 MnmE helical domain YPO4104 PF12241 Trans-2-enoyl-CoA reductase catalytic region YPO4104 PF07055 Enoyl reductase FAD binding domain YPO4104 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase YPO4107 PF00860 Permease family YPO4108 PF13419 Haloacid dehalogenase-like hydrolase YPO4109 PF00528 Binding-protein-dependent transport system inner membrane component YPO4110 PF00528 Binding-protein-dependent transport system inner membrane component YPO4111 PF00497 Bacterial extracellular solute-binding proteins, family 3 YPO4113 PF01895 PhoU domain YPO4114 PF00005 ABC transporter YPO4115 PF00528 Binding-protein-dependent transport system inner membrane component YPO4116 PF00528 Binding-protein-dependent transport system inner membrane component YPO4117 PF12849 PBP superfamily domain YPO4118 PF01380 SIS domain YPO4119 PF00132 Bacterial transferase hexapeptide (six repeats) YPO4119 PF12804 MobA-like NTP transferase domain YPO4120 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain YPO4120 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain YPO4121 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain YPO4121 PF02874 ATP synthase alpha/beta family, beta-barrel domain YPO4122 PF00231 ATP synthase YPO4123 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain YPO4123 PF02874 ATP synthase alpha/beta family, beta-barrel domain YPO4123 PF00306 ATP synthase alpha/beta chain, C terminal domain YPO4124 PF00213 ATP synthase delta (OSCP) subunit YPO4125 PF00430 ATP synthase B/B' CF(0) YPO4126 PF00137 ATP synthase subunit C YPO4127 PF00119 ATP synthase A chain YPO4128 PF03899 ATP synthase I chain YPO4129 PF02527 rRNA small subunit methyltransferase G YPO4130 PF13932 GidA associated domain YPO4130 PF01134 Glucose inhibited division protein A