locus_tag old_locus_tag gene Name start end strand product note type ID NCBI YPMT1.53c YPMT1.53c 54769 55242 - hypothetical protein YPMT1.53c YPMT1.53c%2C hypothetical protein%2C len: 157 aa%3B unknown function%2C highly similar to ORF Y1109 (EMBL:AF074611) from Y.pestis KIM5 pMT1 (157 aa)%2C fasta scores%3B opt: 981 z-score: 1141.4 E(): 0%2C 98.7%25 identity in 157 aa overlap / TR:O68767 (EMBL:AF053947) from Y.pestis KIM5 pMT1 (143 aa) (99.3%25 identity in 143 aa overlap) which has a different putative start codon. Contains probable coiled-coil from 43 to 83 (41 residues) (Max score: 1.683%2C probability 1.00) gene gene4239 http://www.ncbi.nlm.nih.gov/gene/?term= YPMT1.50c YPMT1.50c 51271 52347 - putative recombinase YPMT1.50c%2C probable recombinase%2C len: 358 aa%3B similar to many e.g. RECA_THEAQ (EMBL:L20680)%2C recA%2C Thermus aquaticus recombinase (340 aa)%2C fasta scores%3B opt: 334 z-score: 395.7 E(): 9.9e-15%2C 36.0%25 identity in 317 aa overlap. Highly similar to ORF Y1113 (EMBL:AF074611) from Y.pestis KIM5 pMT1 (358 aa) (99.7%25 identity in 358 aa overlap) / TR:O68764 (EMBL:AF053947) from Y.pestis KIM5 pMT1 (358 aa) (99.7%25 identity in 358 aa overlap). Contains Pfam matches to entry PF00154 recA%2C recA bacterial DNA recombination proteins%2C scores 81.60%2C E-value 8.7e-22 and 55.50%2C E-value 1.5e-14. Contains PS00017 ATP/GTP-binding site motif A (P-loop) gene gene4235 http://www.ncbi.nlm.nih.gov/gene/?term= YPCD1.71c YPCD1.71c 50211 51077 - putative targeted effector protein YPCD1.71c%2C yopP%2C yopJ%2C probable targeted effector protein%2C len: 288 aa%3B highly similar to corresponding CDS from Y.pestis KIM5 pCD1 (EMBL:AF053946%2C AF074612) (288 aa)%2C fasta scores%3B opt: 1849 z-score: 3104.7 E(): 0%2C 99.3%25 identity in 288 aa overlap. Similar to TR:O52162 (EMBL:AF023202)%2C yopP%2C from Yersinia enterocolitica (288 aa) (93.1%25 identity in 288 aa overlap) and YOPJ_YERPS (EMBL:L33833)%2C yopP%2C from Yersinia pseudotuberculosis plasmid pIB1 (264 aa) (96.8%25 identity in 250 aa overlap). The difference in length is due to a frameshift in the Y.pseudotuberculosis sequence. Also similar to TR:O30621 (EMBL:AF013573)%2C avrA%2C Salmonella typhimurium secreted protein (301 aa) (56.7%25 identity in 289 aa overlap) gene gene4150 http://www.ncbi.nlm.nih.gov/gene/?term= YPCD1.94 YPCD1.94 67222 68031 + putative transposase YPCD1.94%2C probable transposase%2C len: 269 aa%3B similar to many e.g. TR:Q46612 (EMBL:X78052)%2C ORFB%2C Enterobacter agglomerans insertion sequence IS1222 (276 aa)%2C fasta scores%3B opt: 713 z-score: 1069.4 E(): 0%2C 44.6%25 identity in 258 aa overlap gene gene4173 http://www.ncbi.nlm.nih.gov/gene/?term= YPMT1.66c YPMT1.66c 66212 67609 - putative DNA-binding protein YPMT1.66c%2C possible DNA-binding protein%2C len: 465 aa%3B unknown function%2C identical to ORF Y1080 (EMBL:AF074611) from Y.pestis KIM5 pMT1 (465 aa)%2C fasta scores%3B opt: 3044 z-score: 3505.7 E(): 0%2C 100.0%25 identity in 465 aa overlap. Contains probable helix-turn-helix motif at aa 162-183 (Score 1554%2C +4.48 SD). Contains PS00017 ATP/GTP-binding site motif A (P-loop) gene gene4253 http://www.ncbi.nlm.nih.gov/gene/?term= 2688912 2688988 + tRNA-Val tRNA Val anticodon GAC%2C Cove score 83.12 tRNA rna52 http://www.ncbi.nlm.nih.gov/gene/?term= YPCD1.54 YPCD1.54 40825 41025 + putative type III secretion protein YPCD1.54%2C yscE%2C probable type III secretion protein%2C len: 66 aa%3B identical to corresponding CDS from Y.pestis KIM5 pCD1 (EMBL:AF053946%2C AF074612) (66 aa)%2C fasta scores%3B opt: 416 z-score: 886.5 E(): 0%2C 100.0%25 identity in 66 aa overlap. Highly similar to YSCE_YEREN (EMBL:M74011)%2C yscE%2C from Yersinia enterocolitica plasmid pYV (66 aa) (93.9%25 identity in 66 aa overlap). Similar to ssaE (EMBL:AJ224892) from Salmonella typhimurium pathogenicity island 2 type III secretion system (80 aa) (32.3%25 identity in 62 aa overlap) gene gene4133 http://www.ncbi.nlm.nih.gov/gene/?term= 23S_rRNA 23S_rRNA 14272 17178 + match to 23S_rRNA 1..2906 ~~96 %25 ID U77925 (Y. enterocolitica 23S) rRNA gene11 http://www.ncbi.nlm.nih.gov/gene/?term= YPMT1.80c YPMT1.80c 79777 80985 - putative transposase YPMT1.80c%2C probable transposase%2C len: 402 aa%3B similar to many e.g. TR:Q45111 (EMBL:U44828) Burkholderia cepacia IS402/IS1356 hybrid insertion sequence transposase (419 aa)%2C fasta scores%3B opt: 1293 z-score: 1512.0 E(): 0%2C 47.5%25 identity in 394 aa overlap. Identical to ORF Y1062 (EMBL:AF074611) from Y.pestis KIM5 pMT1 (402 aa) (100.0%25 identity in 402 aa overlap) / TR:O68779 (EMBL:AF053947) from Y.pestis KIM5 pMT1 (402 aa) (100.0%25 identity in 402 aa overlap). Contains Pfam match to entry PF00872 Transpo_mutator%2C Transposase%2C Mutator family%2C score 430.40%2C E-value 1.6e-125 and PS01007 Transposases%2C Mutator family%2C signature gene gene4269 http://www.ncbi.nlm.nih.gov/gene/?term= YPMT1.12c YPMT1.12c 18304 18573 - hypothetical protein YPMT1.12c YPMT1.12c%2C hypothetical protein%2C len: 89 aa%3B unknown function%2C identical to ORF Y1043 (EMBL:AF074611) from Y.pestis KIM5 pMT1 (89 aa)%2C fasta scores%3B opt: 584 z-score: 734.2 E(): 0%2C 98.9%25 identity in 89 aa overlap gene gene4189 http://www.ncbi.nlm.nih.gov/gene/?term= YPMT1.86A YPMT1.86A 88969 89181 + hypothetical protein YPMT1.86A YPMT1.86A%2C hypothetical protein%2C len: 70 aa%3B unknown function gene gene4276 http://www.ncbi.nlm.nih.gov/gene/?term= 3682605 3682681 - tRNA-Arg tRNA Arg anticodon ACG%2C Cove score 80.38 tRNA rna72 http://www.ncbi.nlm.nih.gov/gene/?term= YPMT1.35c YPMT1.35c 36915 37397 - hypothetical protein YPMT1.35c YPMT1.35c%2C hypothetical protein%2C len: 160 aa%3B unknown function%2C identical to ORF Y1015 (EMBL:AF074611) from Y.pestis KIM5 pMT1 (160 aa)%2C fasta scores%3B opt: 1066 z-score: 1370.8 E(): 0%2C 100.0%25 identity in 160 aa overlap / TR:O68753 (EMBL:AF053947) from Y.pestis KIM5 pMT1 (160 aa) (100.0%25 identity in 160 aa overlap) gene gene4215 http://www.ncbi.nlm.nih.gov/gene/?term= YPMT1.37c YPMT1.37c 38084 38542 - putative transposase YPMT1.37c%2C tnpA%2C probable transposase%2C len: 152 aa%3B similar to many IS200 type transposases e.g. TR:O54306 (EMBL:Y09909)%2C tnpA%2C Salmonella typhi putative transposase (152 aa)%2C fasta scores%3B opt: 1003 z-score: 1293.4 E(): 0%2C 94.1%25 identity in 152 aa overlap. Identical to ORF Y1011 (EMBL:AF074611) from Y.pestis KIM5 pMT1 (169 aa) (100.0%25 identity in 152 aa overlap) gene gene4217 http://www.ncbi.nlm.nih.gov/gene/?term= YPCD1.10c YPCD1.10c 5149 5397 - CAB54887.1 YPCD1.10c%2C possible transposase remnant%2C len: 83 aa%3B similar to many e.g. TR:P94785 (EMBL:X87144) putative transposase from Erwinia herbicola plasmid pPATH insertion element IS1327 (234 aa) gene gene4089 http://www.ncbi.nlm.nih.gov/gene/?term= YPCD1.85 YPCD1.85 59946 60239 + CAB54962.1 YPCD1.85%2C possible transposase remnant%2C len: 97 aa%3B identical to YPCD1.83c and ORF Y0094 from Y.pestis KIM5 pCD1 (EMBL:AF074612) but missing 10 N-terminal residues. Similar to e.g. YI91_SHIDY (EMBL:X17613) ORF from Shigella dysenteriae IS911 (112 aa)%2C fasta scores%3B opt: 244 z-score: 424.6 E(): 2.3e-16%2C 42.7%25 identity in 89 aa overlap gene gene4164 http://www.ncbi.nlm.nih.gov/gene/?term= YPMT1.45c YPMT1.45c 48120 48335 - hypothetical protein YPMT1.45c YPMT1.45c%2C hypothetical protein%2C len: 71 aa%3B unknown function%2C identical to ORF Y1119 (EMBL:AF074611) from Y.pestis KIM5 pMT1 (71 aa)%2C fasta scores%3B opt: 453 z-score: 657.0 E(): 2.7e-29%2C 100.0%25 identity in 66 aa overlap / TR:O68760 (EMBL:AF053947) from Y.pestis KIM5 pMT1 (66 aa) (100.0%25 identity in 66 aa overlap) which has a different putative start codon gene gene4227 http://www.ncbi.nlm.nih.gov/gene/?term= YPCD1.60 YPCD1.60 43221 43850 + putative type III secretion protein YPCD1.60%2C yscK%2C probable type III secretion protein%2C len: 209 aa%3B identical to corresponding CDS from Y.pestis KIM5 pCD1 (EMBL:AF053946%2C AF074612) (209 aa)%2C fasta scores%3B opt: 1447 z-score: 2245.2 E(): 0%2C 100.0%25 identity in 209 aa overlap and to YSCK_YERPS (EMBL:M83986)%2C yscK%2C from Yersinia pseudotuberculosis plasmid pIB1. Highly similar to YSCK_YEREN (EMBL:M74011)%2C yscK%2C from Yersinia enterocolitica plasmid pYV (209 aa) (99.0%25 identity in 209 aa overlap). Similar to TR:P95439 (EMBL:U56077)%2C pscK%2C Pseudomonas aeruginosa exoenzyme S secretion protein (206 aa) (34.0%25 identity in 203 aa overlap) gene gene4139 http://www.ncbi.nlm.nih.gov/gene/?term= YPCD1.90c YPCD1.90c 62851 65166 - putative transposase YPCD1.90c%2C tnpA%2C probable transposase%2C len: 771 aa%3B identical to corresponding CDS from Y.pestis KIM5 pCD1 (EMBL:AF053946) (771 aa)%2C fasta scores%3B opt: 5136 z-score: 6916.0 E(): 0%2C 100.0%25 identity in 771 aa overlap. Highly similar to TR:Q00037 (EMBL:X60200)%2C tnpA%2C E.coli transposon gamma-delta transposase (Tn1000) (1002 aa) (71.2%25 identity in 1002 aa overlap). The difference in length is accounted for by a large internal deletion from the Y.pestis CDS gene gene4169 http://www.ncbi.nlm.nih.gov/gene/?term= YPMT1.20c YPMT1.20c 22454 23116 - hypothetical protein YPMT1.20c YPMT1.20c%2C hypothetical protein%2C len: 220 aa%3B unknown function%2C C-terminus shows similarity to a region within TR:Q45095 (EMBL:D17519) Bacillus circulans beta-1%2C3-glucanase precursor (877 aa)%2C fasta scores%3B opt: 262 z-score: 290.2 E(): 7.4e-09%2C 48.3%25 identity in 87 aa overlap. Also similar to a region of VMTV_LAMBD (EMBL:J02459) bacteriophage lambda major tail protein V (246 aa) (34.0%25 identity in 141 aa overlap). Identical to ORF Y1035 (EMBL:AF074611) from Y.pestis KIM5 pMT1 (220 aa) (100.0%25 identity in 220 aa overlap) / TR:O68736 (EMBL:AF053947) from Y.pestis KIM5 pMT1 (143 aa) which has a different putative start codon. Similar at the C-terminus to ORF Y1041 (EMBL:AF074611) from Y.pestis KIM5 pMT1 (34.0%25 identity in 191 aa overlap) / TR:O68731 (EMBL:AF053947) from Y.pestis KIM5 pMT1 (34.0%25 identity in 191 aa overlap) gene gene4197 http://www.ncbi.nlm.nih.gov/gene/?term= 1797571 1797646 - tRNA-Asn tRNA Asn anticodon GTT%2C Cove score 87.13 tRNA rna40 http://www.ncbi.nlm.nih.gov/gene/?term= YPMT1.64c YPMT1.64c 64672 65349 - putative DNA methylase YPMT1.64c%2C possible DNA methylase%2C len: 225 aa%3B similar to many e.g. MT22_STRPN (EMBL:M14339)%2C dpnA%2C Streptococcus pneumoniae modification methylase (adenine-specific) (268 aa)%2C fasta scores%3B opt: 189 z-score: 238.7 E(): 5.4e-06%2C 27.1%25 identity in 240 aa overlap. Identical to ORF Y1085 (EMBL:AF074611) from Y.pestis KIM5 pMT1 (225 aa) (100.0%25 identity in 225 aa overlap) / TR:O68789 (EMBL:AF053947) from Y.pestis KIM5 pMT1 (213 aa) (100.0%25 identity in 213 aa overlap). Contains PS00092 N-6 Adenine-specific DNA methylases signature gene gene4251 http://www.ncbi.nlm.nih.gov/gene/?term= csrB csrB 1177074 1177355 + gene gene1032 http://www.ncbi.nlm.nih.gov/gene/?term= YPCD1.24c YPCD1.24c 15628 15846 - CAB54901.1 YPCD1.24c%2C possible transposase remnant%2C len: 72 aa%3B highly similar to C-terminus of TR:O87921 (EMBL:Y18002) Yersinia intermedia putative transposase from IS1635.1 (245 aa) gene gene4103 http://www.ncbi.nlm.nih.gov/gene/?term= YPMT1.26Ac YPMT1.26Ac 29825 30079 - hypothetical protein YPMT1.26Ac YPMT1.26Ac%2C hypothetical protein%2C len: 84 aa%3B unknown function%2C identical to ORF Y1027 (EMBL:AF074611) from Y.pestis KIM5 pMT1 (84 aa)%2C fasta scores%3B opt: 551 z-score: 732.5 E(): 0%2C 100.0%25 identity in 84 aa overlap gene gene4205 http://www.ncbi.nlm.nih.gov/gene/?term= YPMT1.78 YPMT1.78 77764 78087 + putative pseudogene YPMT1.78%2C possible pseudogene%2C len: 324 bp%3B similar to part of YADD/YFAD/YHGA/YJIP family members e.g. YHGA_ECOLI (EMBL:U18997)%2C yhgA%2C Escherichia coli hypothetical protein (292 aa) pseudogene gene4267 http://www.ncbi.nlm.nih.gov/gene/?term= 3682824 3682916 - tRNA-Ser tRNA Ser anticodon GCT%2C Cove score 73.90 tRNA rna74 http://www.ncbi.nlm.nih.gov/gene/?term= YPMT1.39c YPMT1.39c 39333 40079 - hypothetical protein YPMT1.39c YPMT1.39c%2C hypothetical protein%2C len: 248 aa%3B unknown function%2C highly similar to ORF Y1009 (EMBL:AF074611) from Y.pestis KIM5 pMT1 (248 aa)%2C fasta scores%3B opt: 1636 z-score: 1943.4 E(): 0%2C 99.6%25 identity in 248 aa overlap gene gene4219 http://www.ncbi.nlm.nih.gov/gene/?term= ompC CAL19882.1 1382162 1383277 + outer membrane protein C%2C porin Similar to Escherichia coli outer membrane protein C precursor OmpC or MeoA or Par SW:OMPC_ECOLI (P06996) (367 aa) fasta scores: E(): 0%2C 70.3%25 id in 381 aa%2C and to Serratia marcescens outer membrane protein C precursor OmpC SW:OMPC_SERMA (Q54471) (376 aa) fasta scores: E(): 0%2C 68.1%25 id in 382 aa CDS rna31 http://www.ncbi.nlm.nih.gov/gene/?term= YPMT1.01 YPMT1.01 87 1109 + putative transposase YPMT1.01%2C probable transposase%2C len: 340 aa%3B identical to insertion sequence IS100 transposases found in Y.pestis plasmids e.g. TR:P74993 (EMBL:AF053947) from KIM5 plasmid pMT1 (340 aa)%2C fasta scores%3B opt: 2328 z-score: 2755.3 E(): 0%2C 100.0%25 identity in 340 aa overlap and also in pathogenicity islands e.g. ORF12 (EMBL:AL031866) (100.0%25 identity in 340 aa overlap). Similar to many others e.g. TRA0_ECOLI (EMBL:X14793)%2C istA%2C E.coli transposase for insertion sequence element IS21 (390 aa) (33.1%25 identity in 329 aa overlap). Contains probable helix-turn-helix motif at aa 19-40 (Score 2045%2C +6.15 SD). Contains Pfam match to entry PF00239 recombinase%2C Site-specific recombinases%2C score 25.70%2C E-value 4.8e-06 gene gene4177 http://www.ncbi.nlm.nih.gov/gene/?term= YPMT1.03c YPMT1.03c 2022 2630 - hypothetical protein YPMT1.03c YPMT1.03c%2C conserved hypothetical protein%2C len: 202 aa%3B unknown function%2C similar to Y194_LAMBD (EMBL:J02459)%2C bacteriophage lambda ORF194 (194 aa)%2C fasta scores%3B opt: 806 z-score: 936.8 E(): 0%2C 62.2%25 identity in 188 aa overlap. Identical to ORF Y1053 from Y.pestis KIM5 pMT1 (202 aa) (100.0%25 identity in 202 aa overlap) gene gene4179 http://www.ncbi.nlm.nih.gov/gene/?term= YPCD1.57 YPCD1.57 41635 42132 + putative type III secretion protein YPCD1.57%2C yscH%2C yopR%2C lcrP%2C possible type III secretion protein%2C len: 165 aa%3B unknown function%2C identical to corresponding CDS from Y.pestis KIM5 pCD1 (EMBL:AF053946%2C AF074612) (165 aa)%2C fasta scores%3B opt: 1042 z-score: 1903.3 E(): 0%2C 100.0%25 identity in 165 aa overlap and to YSCH_YERPS (EMBL:M83986)%2C lcrP%2C from Yersinia pseudotuberculosis plasmid pIB1. Highly similar to YSCH_YEREN (EMBL:M74011)%2C yscH%2C from Yersinia enterocolitica plasmid pYV (165 aa) (96.4%25 identity in 165 aa overlap). Similar to TR:P95436 (EMBL:U56077)%2C pscH%2C Pseudomonas aeruginosa exoenzyme S secretion protein (143 aa) (32.3%25 identity in 133 aa overlap) gene gene4136 http://www.ncbi.nlm.nih.gov/gene/?term= YPMT1.86c YPMT1.86c 88320 88706 - hypothetical protein YPMT1.86c YPMT1.86c%2C hypothetical protein%2C len: 128 aa%3B unknown function%2C identical to ORF Y1102 (EMBL:AF074611) from Y.pestis KIM5 pMT1 (128 aa)%2C fasta scores%3B opt: 801 z-score: 1004.7 E(): 0%2C 100.0%25 identity in 128 aa overlap gene gene4275 http://www.ncbi.nlm.nih.gov/gene/?term= 1222742 1222818 + tRNA-Asp tRNA Asp anticodon GTC%2C Cove score 90.47 tRNA rna24 http://www.ncbi.nlm.nih.gov/gene/?term= YPCD1.20 YPCD1.20 12610 13578 + putative cytotoxic effector protein YPCD1.20%2C yopT%2C probable cytotoxic effector protein%2C len: 322 aa%3B identical to corresponding CDS from Y.pestis KIM5 pCD1 (EMBL:AF053946%2C AF074612) (322 aa)%2C fasta scores%3B opt: 2151 z-score: 3903.8 E(): 0%2C 100.0%25 identity in 322 aa overlap. Also highly similar to yopT from Yersinia enterocolitica plasmid pYV (EMBL:AF054981) (322 aa) (96.9%25 identity in 322 aa overlap). Shows much weaker similarity to the C-terminal third of TR:Q06277 (EMBL:L10282) Haemophilus somnus 76 kD surface protein (874 aa) (31.8%25 identity in 299 aa overlap) and to an internal region of lspA1 (EMBL:AF057695) Haemophilus ducreyi large supernatant protein 1 (4152 aa) (35.8%25 identity in 226 aa overlap) and lpsA2 (EMBL:AF057696) Haemophilus ducreyi large supernatant protein 2 (4919 aa) (35.8%25 identity in 226 aa overlap) gene gene4099 http://www.ncbi.nlm.nih.gov/gene/?term= YPCD1.83c YPCD1.83c 58954 59277 - hypothetical protein YPCD1.83c YPCD1.83c%2C Y0094%2C hypothetical protein%2C len: 107 aa%3B identical to ORF Y0094 and highly similar to ORF Y0068 from Y.pestis KIM5 pCD1 (EMBL:AF074612) (107 aa) (98.1%25 identity in 107 aa overlap). Shows similarity to YI91_SHIDY (EMBL:X17613) Shigella dysenteriae hypothetical protein from transposable element IS911 (112 aa) (43.5%25 identity in 92 aa overlap). Contains probable helix-turn-helix motif at aa 31-52 (Score 1833%2C +5.43 SD). Contains probable coiled-coil from 70 to 100 (31 residues%2C probability 1.00) gene gene4162 http://www.ncbi.nlm.nih.gov/gene/?term= YPCD1.63 YPCD1.63 45581 45847 + putative transposase ORFA YPCD1.63%2C ORFA%2C possible transposase%2C len: 88 aa%3B identical to corresponding CDS from Y.pestis KIM5 pCD1 (EMBL:AF053946%2C AF074612) (88 aa)%2C fasta scores%3B opt: 570 z-score: 734.9 E(): 0%2C 100.0%25 identity in 88 aa overlap and to LCRS_YERPS (EMBL:M83986)%2C lcrS%2C from Yersinia pseudotuberculosis plasmid pIB1. Highly similar to many hypothetical proteins found within insertion elements e.g. TR:O54331 (EMBL:U45993) Xanthomonas campestris insertion sequence IS1403 ORFA (87 aa) (52.9%25 identity in 87 aa overlap) gene gene4142 http://www.ncbi.nlm.nih.gov/gene/?term= YPPCP1.03 YPPCP1.03 2925 3119 + putative replication regulatory protein YPPCP1.03%2C rop%2C plasmid replication regulatory protein%2C len: 64 aa%3B highly similar to e.g. ROP_ECOLI regulatory protein ROP (RNA one modulator) from ColE1 (63 aa)%2C fasta scores%3B opt: 241 z-score: 482.0 E(): 1.5e-19%2C 63.9%25 identity in 61 aa overlap. gene gene4282 http://www.ncbi.nlm.nih.gov/gene/?term= YPCD1.91 YPCD1.91 65330 65881 + putative resolvase YPCD1.91%2C tnpR%2C probable resolvase%2C len: 183 aa%3B identical to corresponding CDS from Y.pestis KIM5 pCD1 (EMBL:AF053946) (183 aa)%2C fasta scores%3B opt: 1133 z-score: 1830.8 E(): 0%2C 100.0%25 identity in 183 aa overlap. Highly similar to TNP1_ECOLI (EMBL:X60200)%2C tnpR%2C E.coli transposon gamma-delta resolvase (Tn1000) (183 aa) (85.7%25 identity in 182 aa overlap). Contains Pfam match to entry PF00239 recombinase%2C Site-specific recombinases%2C score 299.30%2C E-value 4.6e-86%2C PS00397 Site-specific recombinases active site and PS00398 Site-specific recombinases signature 2. Contains probable helix-turn-helix motif at aa 160-181 (Score 2072%2C +6.24 SD) gene gene4170 http://www.ncbi.nlm.nih.gov/gene/?term= 1063926 1064001 + tRNA-Phe tRNA Phe anticodon GAA%2C Cove score 84.11 tRNA rna15 http://www.ncbi.nlm.nih.gov/gene/?term= YPCD1.55 YPCD1.55 41026 41289 + putative type III secretion protein YPCD1.55%2C yscF%2C probable type III secretion protein%2C len: 87 aa%3B identical to corresponding CDS from Y.pestis KIM5 pCD1 (EMBL:AF053946%2C AF074612) (87 aa)%2C fasta scores%3B opt: 560 z-score: 1079.3 E(): 0%2C 100.0%25 identity in 87 aa overlap. Highly similar to YSCF_YEREN (EMBL:M74011)%2C yscF%2C from Yersinia enterocolitica plasmid pYV (87 aa) (96.6%25 identity in 87 aa overlap). Similar to TR:P95434 (EMBL:U56077)%2C pscF%2C Pseudomonas aeruginosa exoenzyme S secretion protein (85 aa) (69.4%25 identity in 72 aa overlap) and PRGI_SALTY (EMBL:U21676)%2C prgI%2C Salmonella typhimurium invasion protein (80 aa) (31.0%25 identity in 71 aa overlap) gene gene4134 http://www.ncbi.nlm.nih.gov/gene/?term= YPCD1.51 YPCD1.51 37330 37743 + hypothetical protein YPCD1.51 YPCD1.51%2C yscB%2C hypothetical protein%2C len: 137 aa%3B unknown function%2C identical to corresponding CDS from Y.pestis KIM5 pCD1 (EMBL:AF053946%2C AF074612) (137 aa)%2C fasta scores%3B opt: 891 z-score: 1671.9 E(): 0%2C 100.0%25 identity in 137 aa overlap. Highly similar to YSCB_YEREN (EMBL:M74011)%2C yscB%2C from Yersinia enterocolitica plasmid pYV (137 aa) (98.5%25 identity in 137 aa overlap). Similar to TR:P95430 (EMBL:U56077)%2C pscB%2C Pseudomonas aeruginosa exoenzyme S secretion protein (140 aa) (42.6%25 identity in 129 aa overlap) gene gene4130 http://www.ncbi.nlm.nih.gov/gene/?term= YPCD1.52 YPCD1.52 37749 39572 + putative type III secretion protein YPCD1.52%2C yscC%2C probable type III secretion protein%2C len: 607 aa%3B identical to corresponding CDS from Y.pestis KIM5 pCD1 (EMBL:AF053946%2C AF074612) (607 aa)%2C fasta scores%3B opt: 3929 z-score: 5889.4 E(): 0%2C 100.0%25 identity in 607 aa overlap. Highly similar to YSCC_YEREN (EMBL:M74011)%2C yscC%2C from Yersinia enterocolitica plasmid pYV (607 aa) (97.9%25 identity in 607 aa overlap). Similar to many other bacterial secretion system components e.g. TR:P95431 (EMBL:U56077)%2C pscC%2C Pseudomonas aeruginosa exoenzyme S secretion protein (600 aa) (63.1%25 identity in 601 aa overlap). Contains Pfam match to entry PF00263 Bac_GSP proteins%2C Bacterial type II secretion system protein%2C score 618.20%2C E-value 4.9e-182 and PS00875 Bacterial type II secretion system protein D signature gene gene4131 http://www.ncbi.nlm.nih.gov/gene/?term= YPCD1.56 YPCD1.56 41291 41638 + putative type III secretion protein YPCD1.56%2C yscG%2C probable type III secretion protein%2C len: 115 aa%3B identical to corresponding CDS from Y.pestis KIM5 pCD1 (EMBL:AF053946%2C AF074612) (115 aa)%2C fasta scores%3B opt: 756 z-score: 1541.9 E(): 0%2C 100.0%25 identity in 115 aa overlap. Highly similar to YSCG_YEREN (EMBL:M74011)%2C yscG%2C from Yersinia enterocolitica plasmid pYV (115 aa) (93.9%25 identity in 115 aa overlap). Similar to TR:P95435 (EMBL:U56077)%2C pscG%2C Pseudomonas aeruginosa exoenzyme S secretion protein (115 aa) (55.1%25 identity in 107 aa overlap) gene gene4135 http://www.ncbi.nlm.nih.gov/gene/?term= YPCD1.33c YPCD1.33c 23246 23686 - hypothetical protein lcrR YPCD1.33c%2C lcrR%2C hypothetical protein%2C len: 146 aa%3B unknown function%2C identical to corresponding CDS from Y.pestis KIM5 pCD1 (EMBL:AF053946%2C AF074612) (146 aa)%2C fasta scores%3B opt: 977 z-score: 1908.6 E(): 0%2C 100.0%25 identity in 146 aa overlap. Identical to LCRR_YERPS (EMBL:M96850)%2C lcrR%2C from Yersinia pseudotuberculosis plasmid pIB1 (146 aa). Highly similar to TR:O68549 (EMBL:AF050104)%2C lcrR%2C from Yersinia enterocolitica plasmid pYV (146 aa) (99.3%25 identity in 146 aa overlap) and a second Y.pestis KIM sequence LCRR_YERPE (EMBL:M35740) from pCD1 (146 aa) (98.6%25 identity in 146 aa overlap). Similar to TR:O30537 (EMBL:AF010150)%2C pcrR%2C Pseudomonas aeruginosa type III secretion system component (144 aa) (52.5%25 identity in 141 aa overlap) gene gene4112 http://www.ncbi.nlm.nih.gov/gene/?term= 1273151 1273226 + tRNA-Lys tRNA Lys anticodon TTT%2C Cove score 95.27 tRNA rna28 http://www.ncbi.nlm.nih.gov/gene/?term= 3909139 3909225 - tRNA-Leu tRNA Leu anticodon GAG%2C Cove score 68.10 tRNA rna77 http://www.ncbi.nlm.nih.gov/gene/?term= YPCD1.02 YPCD1.02 1110 1889 + putative ATP-binding protein YPCD1.02%2C probable transposase%2C len: 259 aa%3B putative insertion sequence IS100%2C identical to corresponding CDS from Y.pestis KIM5 pCD1 (EMBL:AF053946%2C AF074612) (259 aa)%2C fasta scores%3B opt: 1658 z-score: 2693.4 E(): 0%2C 100.0%25 identity in 259 aa overlap. Similar to many others e.g. ISTB_ECOLI (EMBL:X14793)%2C istB%2C E.coli transposase for insertion sequence element IS21 (265 aa) (47.4%25 identity in 249 aa overlap). Contains PS00017 ATP/GTP-binding site motif A (P-loop) gene gene4081 http://www.ncbi.nlm.nih.gov/gene/?term= YPMT1.73 YPMT1.73 73881 74369 + hypothetical protein YPMT1.73 YPMT1.73%2C conserved hypothetical protein%2C len: 162 aa%3B similar to possible endonucleases e.g. TR:Q46707 (EMBL:U09868)%2C nuc%2C Escherichia coli ORF from plasmid pKM101 (177 aa)%2C fasta scores%3B opt: 380 z-score: 484.0 E(): 1.2e-19%2C 38.1%25 identity in 155 aa overlap and TR:O07482 (EMBL:Y13308)%2C nuc%2C Yersinia enterocolitica ORF (181 aa) (37.8%25 identity in 164 aa overlap). Identical to ORF Y1070 (EMBL:AF074611) from Y.pestis KIM5 pMT1 (162 aa) (100.0%25 identity in 162 aa overlap) gene gene4261 http://www.ncbi.nlm.nih.gov/gene/?term= YPPCP1.06 YPPCP1.06 6006 6422 + hypothetical protein YPPCP1.06%2C unknown%2C len: 138 aa gene gene4285 http://www.ncbi.nlm.nih.gov/gene/?term= YPCD1.34c YPCD1.34c 23683 25797 - putative membrane-bound Yop protein YPCD1.34c%2C lcrD%2C yscV%2C probable membrane-bound Yop protein%2C len: 704 aa%3B identical to corresponding CDS from Y.pestis KIM5 pCD1 (EMBL:AF053946%2C AF074612) (704 aa)%2C fasta scores%3B opt: 4430 z-score: 5446.5 E(): 0%2C 100.0%25 identity in 704 aa overlap. An alternative sequence LCRD_YERPE from Y.pestis has N388 instead of I388. Identical to TR:Q56976 (EMBL:M96850)%2C lcrD%2C from Yersinia pseudotuberculosis (407 aa). Highly similar to e.g. LCRD_YEREN (EMBL:X67771)%2C lcrD%2C from Yersinia enterocolitica plasmid pYV (99.1%25 identity in 704 aa overlap). Similar to many others e.g. TR:O30536 (EMBL:AF010150)%2C pcrD%2C Pseudomonas aeruginosa type III secretion system component (706 aa) (79.7%25 identity in 699 aa overlap). Contains Pfam match to entry PF00771 FHIPEP%2C FHIPEP family%2C score 1387.80%2C E-value 0 and PS00994 Bacterial export FHIPEP family signature. Contains a {c}8 repeat near the N-terminus gene gene4113 http://www.ncbi.nlm.nih.gov/gene/?term= YPMT1.70 YPMT1.70 71216 71836 + putative resolvase YPMT1.70%2C probable resolvase%2C len: 206 aa%3B similar to many e.g. PAA4_ECOLI (EMBL:M59825)%2C parA%2C Escherichia coli partition resolvase from plasmid INCP-beta RP4 (219 aa)%2C fasta scores%3B opt: 396 z-score: 474.0 E(): 4.2e-19%2C 39.4%25 identity in 198 aa overlap. Identical to ORF Y1073 (EMBL:AF074611) from Y.pestis KIM5 pMT1 (206 aa) (100.0%25 identity in 206 aa overlap). Contains probable helix-turn-helix motif at aa 182-203 (Score 1811%2C +5.36 SD). Contains Pfam match to entry PF00239 recombinase%2C Site-specific recombinases%2C score 86.80%2C E-value 4.5e-23%2C PS00397 Site-specific recombinases active site and PS00398 Site-specific recombinases signature 2 gene gene4258 http://www.ncbi.nlm.nih.gov/gene/?term= 4325247 4325323 - tRNA-Pro tRNA Pro anticodon TGG%2C Cove score 92.73 tRNA rna95 http://www.ncbi.nlm.nih.gov/gene/?term= YPMT1.55c YPMT1.55c 56338 56781 - hypothetical protein YPMT1.55c YPMT1.55c%2C hypothetical protein%2C len: 147 aa%3B unknown function%2C identical to ORF Y1107 (EMBL:AF074611) from Y.pestis KIM5 pMT1 (147 aa)%2C fasta scores%3B opt: 942 z-score: 1149.0 E(): 0%2C 100.0%25 identity in 147 aa overlap / TR:O68769 (EMBL:AF053947) from Y.pestis KIM5 pMT1 (147 aa) (100.0%25 identity in 147 aa overlap) gene gene4241 http://www.ncbi.nlm.nih.gov/gene/?term= YPMT1.46Bc YPMT1.46Bc 48884 49159 - hypothetical protein YPMT1.46Bc YPMT1.46Bc%2C hypothetical protein%2C len: 91 aa%3B unknown function%2C identical to ORF Y1117 (EMBL:AF074611) from Y.pestis KIM5 pMT1 (91 aa)%2C fasta scores%3B opt: 620 z-score: 793.1 E(): 0%2C 100.0%25 identity in 91 aa overlap gene gene4230 http://www.ncbi.nlm.nih.gov/gene/?term= YPMT1.36c YPMT1.36c 37603 37890 - hypothetical protein YPMT1.36c YPMT1.36c%2C hypothetical protein%2C len: 95 aa%3B unknown function%2C identical to ORF Y1012 (EMBL:AF074611) from Y.pestis KIM5 pMT1 (116 aa)%2C fasta scores%3B opt: 674 z-score: 918.2 E(): 0%2C 100.0%25 identity in 95 aa overlap / TR:O68754 (EMBL:AF053947) from Y.pestis KIM5 pMT1 (93 aa) (100.0%25 identity in 93 aa overlap) which have different putative start codons gene gene4216 http://www.ncbi.nlm.nih.gov/gene/?term= YPMT1.24c YPMT1.24c 26557 27813 - hypothetical protein YPMT1.24c YPMT1.24c%2C hypothetical protein%2C len: 418 aa%3B unknown function%2C identical to ORF Y1030 (EMBL:AF074611) from Y.pestis KIM5 pMT1 (418 aa)%2C fasta scores%3B opt: 2863 z-score: 3413.3 E(): 0%2C 100.0%25 identity in 418 aa overlap / TR:O68741 (EMBL:AF053947) from Y.pestis KIM5 pMT1 (402 aa) (100.0%25 identity in 402 aa overlap) which has a different putative start codon. Contains PS00017 ATP/GTP-binding site motif A (P-loop) gene gene4201 http://www.ncbi.nlm.nih.gov/gene/?term= ompF CAL20063.1 1599145 1600227 - Outer membrane porin protein F Similar to Klebsiella pneumoniae outer membrane protein C OmpC SW:OMPC_KLEPN (Q48473) (363 aa) fasta scores: E(): 0%2C 62.2%25 id in 370 aa%2C to Escherichia coli outer membrane pore protein E OmpE SW:PHOE_ECOLI (P02932) (351 aa) fasta scores: E(): 0%2C 58.3%25 id in 362 aa and to Yersinia pestis YPO1205 (371 aa) fasta scores: E(): 0%2C62.2%25 identity in 376 aa overlap CDS rna35 http://www.ncbi.nlm.nih.gov/gene/?term= YPCD1.42 YPCD1.42 29966 31333 + putative type III secretion protein YPCD1.42%2C yscP%2C probable type III secretion protein%2C len: 455 aa%3B identical to corresponding CDS from Y.pestis KIM5 pCD1 (EMBL:AF053946%2C AF074612) (455 aa)%2C fasta scores%3B opt: 3027 z-score: 3941.8 E(): 0%2C 100.0%25 identity in 455 aa overlap gene gene4121 http://www.ncbi.nlm.nih.gov/gene/?term= YPMT1.59c YPMT1.59c 59258 61267 - putative DNA-binding protein YPMT1.59c%2C possible DNA-binding protein%2C len: 669 aa%3B unknown function%2C similar to many hypothetical proteins e.g. TR:O82909 (EMBL:AB011549) Escherichia coli hypothetical protein from plasmid pO157 (652 aa)%2C fasta scores%3B opt: 2220 z-score: 2530.2 E(): 0%2C 52.9%25 identity in 660 aa overlap. Identical to ORF Y1092 (EMBL:AF074611) from Y.pestis KIM5 pMT1 (669 aa) (100.0%25 identity in 669 aa overlap) / TR:O68794 (EMBL:AF053947) from Y.pestis KIM5 pMT1 (669 aa) (100.0%25 identity in 669 aa overlap). Contains probable helix-turn-helix motif at aa 156-177 (Score 1078%2C +2.86 SD). Contains a {gct}4 repeat gene gene4245 http://www.ncbi.nlm.nih.gov/gene/?term= YPCD1.53 YPCD1.53 39569 40828 + putative type III secretion protein YPCD1.53%2C yscD%2C probable type III secretion protein%2C len: 419 aa%3B identical to corresponding CDS from Y.pestis KIM5 pCD1 (EMBL:AF053946%2C AF074612) (419 aa)%2C fasta scores%3B opt: 2758 z-score: 3668.1 E(): 0%2C 99.8%25 identity in 419 aa overlap. Highly similar to YSCD_YEREN (EMBL:M74011)%2C yscD%2C from Yersinia enterocolitica plasmid pYV (418 aa) (98.3%25 identity in 419 aa overlap). Similar to TR:P95432 (EMBL:U56077)%2C pscD%2C Pseudomonas aeruginosa exoenzyme S secretion protein (432 aa) (43.5%25 identity in 423 aa overlap) gene gene4132 http://www.ncbi.nlm.nih.gov/gene/?term= YPCD1.14c YPCD1.14c 9123 9386 - putative transposase remnant YPCD1.14c%2C possible transposase remnant%2C len: 87 aa%3B similar to region of Y0070 from Y.pestis KIM5 pCD1 (EMBL:AF074612) and to regions of many transposases e.g. YIS2_SHISO (EMBL:X05952) Shigella sonnei insertion sequence IS600 putative ORFB gene gene4093 http://www.ncbi.nlm.nih.gov/gene/?term= 2946322 2946406 - tRNA-Leu tRNA Leu anticodon TAG%2C Cove score 76.99 tRNA rna56 http://www.ncbi.nlm.nih.gov/gene/?term= YPMT1.04c YPMT1.04c 2932 5820 - putative phage tail protein YPMT1.04c%2C possible phage tail protein%2C len: 962 aa%3B C-terminus similar to region of Y314_LAMBD (EMBL:J02459)%2C bacteriophage lambda ORF314 (314 aa)%2C fasta scores%3B opt: 1080 z-score: 1011.1 E(): 0%2C 66.4%25 identity in 250 aa overlap. Identical to ORF Y1051 (EMBL:AF074611) from Y.pestis KIM5 pMT1 (978 aa) (100.0%25 identity in 962 aa overlap) / TR:O68722 (EMBL:AF053947) from Y.pestis KIM5 pMT1 (860 aa) (100.0%25 identity in 860 aa overlap) except for differing putative start codons gene gene4181 http://www.ncbi.nlm.nih.gov/gene/?term= YPMT1.25Ac YPMT1.25Ac 28653 28919 - hypothetical protein YPMT1.25Ac YPMT1.25Ac%2C hypothetical protein%2C len: 88 aa%3B unknown function%2C identical to ORF Y1028 (EMBL:AF074611) from Y.pestis KIM5 pMT1 (88 aa)%2C fasta scores%3B opt: 563 z-score: 793.0 E(): 0%2C 100.0%25 identity in 88 aa overlap gene gene4203 http://www.ncbi.nlm.nih.gov/gene/?term= ssrA ssrA 1245588 1245951 + gene gene1102 http://www.ncbi.nlm.nih.gov/gene/?term= 1273048 1273123 + tRNA-Lys tRNA Lys anticodon TTT%2C Cove score 95.27 tRNA rna27 http://www.ncbi.nlm.nih.gov/gene/?term= YPCD1.64 YPCD1.64 45871 46305 + putative transposase ORFB YPCD1.64%2C ORFB%2C possible transposase%2C len: 144 aa%3B highly similar to corresponding CDS from Y.pestis KIM5 pCD1 (EMBL:AF053946%2C AF074612) (134 aa)%2C fasta scores%3B opt: 897 z-score: 1625.8 E(): 0%2C 99.2%25 identity in 130 aa overlap. Similar to the N-terminus of TR:O54332 (EMBL:U45993) Xanthomonas campestris insertion sequence IS1403 ORFB (271 aa) (40.7%25 identity in 123 aa overlap). The following frameshifted ORF is similar to the remainder of this sequence gene gene4143 http://www.ncbi.nlm.nih.gov/gene/?term= YPMT1.72c YPMT1.72c 72866 73141 - hypothetical protein YPMT1.72c YPMT1.72c%2C hypothetical protein%2C len: 91 aa%3B unknown function%2C identical to ORF Y1071 (EMBL:AF074611) from Y.pestis KIM5 pMT1 (96 aa)%2C fasta scores%3B opt: 605 z-score: 787.0 E(): 0%2C 100.0%25 identity in 91 aa overlap / TR:O68785 (EMBL:AF053947) from Y.pestis KIM5 pMT1 (63 aa) (100.0%25 identity in 63 aa overlap) which have different putative start codons gene gene4260 http://www.ncbi.nlm.nih.gov/gene/?term= YPCD1.78c YPCD1.78c 57150 57224 - putative repA translation protein YPCD1.78c%2C tap%2C probable repA translation protein%2C len: 24 aa%3B identical to corresponding CDS from Y.pestis KIM5 pCD1 (EMBL:AF053946%2C AF074612) (24 aa). Similar to other tap proteins e.g. TR:P72429 (EMBL:U64797)%2C tap%2C from Salmonella enteritidis virulence plasmid (25 aa) gene gene4157 http://www.ncbi.nlm.nih.gov/gene/?term= 4221602 4221678 - tRNA-Ile tRNA Ile anticodon GAT%2C Cove score 94.77 tRNA rna93 http://www.ncbi.nlm.nih.gov/gene/?term= 4178738 4178814 - tRNA-Ile tRNA Ile anticodon GAT%2C Cove score 94.77 tRNA rna84 http://www.ncbi.nlm.nih.gov/gene/?term= 1976985 1977060 - tRNA-Asn tRNA Asn anticodon GTT%2C Cove score 87.13 tRNA rna41 http://www.ncbi.nlm.nih.gov/gene/?term= 3909002 3909078 - tRNA-Met tRNA Met anticodon CAT%2C Cove score 86.07 tRNA rna76 http://www.ncbi.nlm.nih.gov/gene/?term= YPCD1.12c YPCD1.12c 6195 7157 - putative plasmid partitioning control protein YPCD1.12c%2C sopB%2C probable plasmid partitioning control protein%2C len: 320 aa%3B identical to corresponding CDS from Y.pestis KIM5 pCD1 (EMBL:AF053946%2C AF074612) (320 aa)%2C fasta scores%3B opt: 2024 z-score: 3343.5 E(): 0%2C 100.0%25 identity in 320 aa overlap. Similar to many others e.g. SOPB_ECOLI (EMBL:X04619) E.coli F plasmid (323 aa) (49.1%25 identity in 324 aa overlap). Note that sopB in AF053946 has been designated with an initiation codon 44 codons downstream%2C resulting in a 277 aa translation. We have chosen the upstream initiation codon after comparison with other sopB genes%2C notably the F plasmid sequence. Contains probable helix-turn-helix motif at aa 181-202 (Score 1516%2C +4.35 SD) gene gene4091 http://www.ncbi.nlm.nih.gov/gene/?term= YPCD1.22c YPCD1.22c 14020 14409 - hypothetical protein YPCD1.22c YPCD1.22c%2C Y0063%2C hypothetical protein%2C len: 129 aa%3B unknown function%2C identical to corresponding CDS from Y.pestis KIM5 pCD1 (EMBL:AF053946%2C AF074612) (129 aa)%2C fasta scores%3B opt: 832 z-score: 1646.4 E(): 0%2C 99.2%25 identity in 129 aa overlap gene gene4101 http://www.ncbi.nlm.nih.gov/gene/?term= 3333126 3333201 - tRNA-Val tRNA Val anticodon TAC%2C Cove score 90.85 tRNA rna63 http://www.ncbi.nlm.nih.gov/gene/?term= YPPCP1.08c YPPCP1.08c 7790 8089 - putative transcriptional regulator YPPCP1.08c%2C probable transcriptional regulator%2C len: 99 aa%3B similar to several predicted transcriptional regulators e.g. TR:P95258 (EMBL:Z84498) Mycobacterium tuberculosis MTCY09F9.0 8C (Rv1956) (149 aa)%2C fasta scores%3B opt: 190 z-score: 314.7 E(): 3.1e-10%2C 35.4%25 identity in 99 aa overlap. Contains helix-turn-helix motif from aa 42-63 (Score 2083%2C +6.28 SD) gene gene4287 http://www.ncbi.nlm.nih.gov/gene/?term= YPCD1.13c YPCD1.13c 7157 8323 - putative plasmid partitioning transcription repressor YPCD1.13c%2C sopA%2C probable plasmid partitioning transcription repressor%2C len: 388 aa%3B identical to corresponding CDS from Y.pestis KIM5 pCD1 (EMBL:AF053946%2C AF074612)%2C fasta scores%3B opt: 2597 z-score: 4137.6 E(): 0%2C 100.0%25 identity in 388 aa overlap. Similar to many others e.g. SOPA_ECOLI (EMBL:X04619) E.coli F plasmid (388 aa) (69.2%25 identity in 386 aa overlap). Note that sopA in AF053946 has been designated with an initiation codon 14 codons upstream%2C resulting in a 402 aa translation. We have chosen the downstream initiation codon after comparison with other sopA genes%2C notably the F plasmid sequence. Contains Pfam match to entry PF00991 ParA%2C ParA family ATPase%2C score 78.10%2C E-value 1.8e-19. Contains probable helix-turn-helix motif at aa 41-62 (Score 2192%2C +6.65 SD) gene gene4092 http://www.ncbi.nlm.nih.gov/gene/?term= 4517686 4517762 - tRNA-Pro tRNA Pro anticodon TGG%2C Cove score 92.73 tRNA rna105 http://www.ncbi.nlm.nih.gov/gene/?term= YPCD1.97c YPCD1.97c 69378 70304 - putative transposase YPCD1.97c%2C probable transposase remnant%2C len: 308 aa%3B identical to TR:O68707 from Y.pestis KIM5 pCD1 (EMBL:AF053946) (390 aa)%2C fasta scores%3B opt: 2101 z-score: 3521.8 E(): 0%2C 100.0%25 identity in 308 aa overlap%2C but missing the N-terminus where it has been interrupted by an IS100 element. The N-terminal remainder in present in YPCD1.03c. Highly similar to TRA0_ECOLI (EMBL:X14793)%2C istA%2C E.coli insertion element IS21 transposase (390 aa) (94.8%25 identity in 308 aa overlap). Also similar to TR:P74993 (EMBL:AF053947) Y.pestis KIM5 plasmid pMT1 IS100 putative transposase (340 aa) (32.8%25 identity in 241 aa overlap) gene gene4176 http://www.ncbi.nlm.nih.gov/gene/?term= 2115031 2115106 + tRNA-Gly tRNA Gly anticodon GCC%2C Cove score 93.74 tRNA rna43 http://www.ncbi.nlm.nih.gov/gene/?term= YPCD1.67c YPCD1.67c 47122 48528 - putative protein-tyrosine phosphatase Yop effector YPCD1.67c%2C yopH%2C probable protein-tyrosine phosphatase Yop effector%2C len: 468 aa%3B identical to corresponding CDS from Y.pestis KIM5 pCD1 (EMBL:AF053946%2C AF074612) (468 aa)%2C fasta scores%3B opt: 3031 z-score: 3879.6 E(): 0%2C 100.0%25 identity in 468 aa overlap. Highly similar to YOPH_YERPS (EMBL:Y00551)%2C yopH%2C from Yersinia pseudotuberculosis plasmid pIB1 (468 aa) (99.8%25 identity in 468 aa overlap) and to YOPH_YEREN (EMBL:M30457)%2C yopH%2C from Yersinia enterocolitica plasmid pYV (468 aa) (99.1%25 identity in 468 aa overlap). Contains Pfam match to entry PF00102 Y_phosphatase%2C Protein-tyrosine phosphatase%2C score 211.90%2C E-value 9.6e-60 and PS00383 Tyrosine specific protein phosphatases active site gene gene4146 http://www.ncbi.nlm.nih.gov/gene/?term= 3335833 3335908 + tRNA-Ala tRNA Ala anticodon GGC%2C Cove score 86.95 tRNA rna64 http://www.ncbi.nlm.nih.gov/gene/?term= YPCD1.23 YPCD1.23 14681 15100 + hypothetical protein YPCD1.23 YPCD1.23%2C Y0062%2C hypothetical protein%2C len: 139 aa%3B unknown function%2C identical to corresponding CDS from Y.pestis KIM5 pCD1 (EMBL:AF053946%2C AF074612) (129 aa)%2C fasta scores%3B opt: 914 z-score: 1870.6 E(): 0%2C 100.0%25 identity in 139 aa overlap gene gene4102 http://www.ncbi.nlm.nih.gov/gene/?term= YPMT1.07c YPMT1.07c 11189 11776 - putative phage tail protein YPMT1.07c%2C possible phage tail protein%2C len: 195 aa%3B similar to TR:O64334 (EMBL:AF064539) bacteriophage N15 minor tail protein GP20 (192 aa)%2C fasta scores%3B opt: 251 z-score: 312.6 E(): 4.2e-10%2C 31.0%25 identity in 203 aa overlap and VTAI_LAMBD (EMBL:J02459) bacteriophage lambda tail assembly protein I (223 aa) (28.5%25 identity in 207 aa overlap). Identical to ORF Y1048 (EMBL:AF074611) from Y.pestis KIM5 pMT1 (195 aa) (99.5%25 identity in 195 aa overlap) / TR:O68725 (EMBL:AF053947) from Y.pestis KIM5 pMT1 (183 aa) (100.0%25 identity in 183 aa overlap) which has a different putative start codon gene gene4184 http://www.ncbi.nlm.nih.gov/gene/?term= 4211082 4211157 - tRNA-Thr tRNA Thr anticodon GGT%2C Cove score 94.75 tRNA rna86 http://www.ncbi.nlm.nih.gov/gene/?term= 4547972 4548062 - tRNA-Sec tRNA SeC(p) anticodon TCA%2C Cove score 71.03 tRNA rna106 http://www.ncbi.nlm.nih.gov/gene/?term= 16S_rRNA 16S_rRNA 1217505 1218993 + match to 16S_rRNA 1..1489 (EMBL:YPE16SA) rRNA gene1073 http://www.ncbi.nlm.nih.gov/gene/?term= 1273255 1273324 + tRNA Pseudo anticodon TTT%2C Cove score 40.49 tRNA rna29 http://www.ncbi.nlm.nih.gov/gene/?term= YPMT1.21c YPMT1.21c 23191 24066 - hypothetical protein YPMT1.21c YPMT1.21c%2C hypothetical protein%2C len: 291 aa%3B unknown function%2C weak similarity to SRPI_SYNP7 (EMBL:U23436)%2C srpI%2C Synechococcus sp. hypothetical protein from plasmid pANL (306 aa)%2C fasta scores%3B opt: 200 z-score: 241.0 E(): 4.1e-06%2C 25.0%25 identity in 300 aa overlap. Identical to ORF Y1034 (EMBL:AF074611) from Y.pestis KIM5 (291 aa) (100.0%25 identity in 291 aa overlap) / TR:O68737 (EMBL:AF053947) from Y.pestis KIM5 pMT1 (291 aa) (100.0%25 identity in 291 aa overlap) gene gene4198 http://www.ncbi.nlm.nih.gov/gene/?term= 5S_rRNA 5S_rRNA 4384614 4384847 - match to 5SrRNA 1..234 blast score 1140 percent identity 98 (incl. 23S-5S spacer) rRNA gene3860 http://www.ncbi.nlm.nih.gov/gene/?term= 4388006 4388081 - tRNA-Glu tRNA Glu anticodon TTC%2C Cove score 56.95 tRNA rna103 http://www.ncbi.nlm.nih.gov/gene/?term= YPCD1.73c YPCD1.73c 53679 54128 - hypothetical protein YPCD1.73c YPCD1.73c%2C Y0008%2C hypothetical protein%2C len: 149 aa%3B unknown function%2C highly similar to corresponding CDS from Y.pestis KIM5 pCD1 (EMBL:AF074612)%2C Y0008%2C hypothetical protein (142 aa)%2C fasta scores%3B opt: 857 z-score: 1651.9 E(): 0%2C 93.6%25 identity in 140 aa overlap and to TR:O85238 (EMBL:AF054978) hypothetical protein from Yersinia enterocolitica plasmid pVY (155 aa) (92.9%25 identity in 155 aa overlap) gene gene4152 http://www.ncbi.nlm.nih.gov/gene/?term= YPMT1.06c YPMT1.06c 6536 11173 - putative phage tail protein YPMT1.06c%2C possible phage tail protein%2C len: 1545 aa%3B similar to TR:O64335 (EMBL:AF064539) bacteriophage N15 tail tip fiber protein GP21 (1061 aa)%2C fasta scores%3B opt: 1383 z-score: 1321.3 E(): 0%2C 30.2%25 identity in 993 aa overlap and N-terminus similar to VHSJ_LAMBD (EMBL:J02459) bacteriophage lambda host specificity protein J (1132 aa) (32.0%25 identity in 923 aa overlap). Highly similar to ORF Y1049 (EMBL:AF074611) from Y.pestis KIM5 pMT1 (1545 aa) (99.9%25 identity in 1545 aa overlap) / TR:O68724 (EMBL:AF053947) from Y.pestis KIM5 pMT1 (1492 aa) (100.0%25 identity in 1472 aa overlap) which has a different putative start and stop codon. Contains probable coiled-coils from 856 to 950 (95 residues) (Max score: 1.724%2C probability 1.00) and from 977 to 1028 (52 residues) (Max score: 1.600%2C probability 0.99). Contains two Pfam matches to entry PF00041 fn3%2C Fibronectin type III domain%2C scores 18.40%2C E-value 0.036 and 0.80%2C E-value 1.5 gene gene4183 http://www.ncbi.nlm.nih.gov/gene/?term= 971477 971550 - tRNA-Gly tRNA Gly anticodon CCC%2C Cove score 78.87 tRNA rna13 http://www.ncbi.nlm.nih.gov/gene/?term= YPMT1.71 YPMT1.71 71857 72843 + hypothetical protein YPMT1.71 YPMT1.71%2C conserved hypothetical protein%2C len: 328 aa%3B similar to YADD/YFAD/YHGA/YJIP family e.g. YHGA_ECOLI (EMBL:U18997)%2C yhgA%2C Escherichia coli hypothetical protein (292 aa)%2C fasta scores%3B opt: 1001 z-score: 1151.9 E(): 0%2C 50.5%25 identity in 309 aa overlap. Identical to ORF Y1072 (EMBL:AF074611) from Y.pestis KIM5 pMT1 (328 aa) (99.7%25 identity in 328 aa overlap) / TR:O68786 (EMBL:AF053947) from Y.pestis KIM5 pMT1 (285 aa) (100.0%25 identity in 285 aa overlap) which has a different putative start codon gene gene4259 http://www.ncbi.nlm.nih.gov/gene/?term= 2108507 2108582 + tRNA-Lys tRNA Lys anticodon CTT%2C Cove score 96.54 tRNA rna42 http://www.ncbi.nlm.nih.gov/gene/?term= YPMT1.49Ac YPMT1.49Ac 50980 51180 - hypothetical protein YPMT1.49Ac YPMT1.49Ac%2C hypothetical protein%2C len: 66 aa%3B unknown function gene gene4234 http://www.ncbi.nlm.nih.gov/gene/?term= 1384464 1384539 + tRNA-Thr tRNA Thr anticodon TGT%2C Cove score 93.97 tRNA rna33 http://www.ncbi.nlm.nih.gov/gene/?term= YPMT1.43c YPMT1.43c 45098 45742 - hypothetical protein YPMT1.43c YPMT1.43c%2C hypothetical protein%2C len: 214 aa%3B unknown function%2C identical to ORF Y1002 (EMBL:AF074611) from Y.pestis KIM5 pMT1 (214 aa)%2C fasta scores%3B opt: 1449 z-score: 1765.6 E(): 0%2C 100.0%25 identity in 214 aa overlap / TR:O68758 (EMBL:AF053947) from Y.pestis KIM5 pMT1 (74 aa) (100.0%25 identity in 74 aa overlap) which has a different putative start codon gene gene4225 http://www.ncbi.nlm.nih.gov/gene/?term= YPMT1.57c YPMT1.57c 57333 58115 - putative IS100 transposase YPMT1.57c%2C IS100 transposase%2C len: 260 aa%3B identical many other IS100 transposases e.g. TR:P74994 (EMBL:U59875) Yersinia pestis pesticin plasmid putative insertion sequence IS100 ORFB (259 aa)%2C fasta scores%3B opt: 1658 z-score: 1841.0 E(): 0%2C 100.0%25 identity in 259 aa overlap with a different putative start codon. Contains PS00017 ATP/GTP-binding site motif A (P-loop) gene gene4243 http://www.ncbi.nlm.nih.gov/gene/?term= YMT1.42Ac YMT1.42Ac 44876 45022 - hypothetical protein YPMT1.42Ac YPMT1.42Ac%2C hypothetical protein%2C len: 48 aa%3B unknown function gene gene4224 http://www.ncbi.nlm.nih.gov/gene/?term= YPCD1.03c YPCD1.03c 1956 2204 - CAB54880.1 YPCD1.03c%2C probable transposase remnant%2C len: 83 aa%3B similar to several e.g. N-terminus of TRA0_ECOLI (EMBL:X14793)%2C istA%2C E.coli transposase for insertion sequence element IS21 (390 aa)%2C similarity is interrupted by the adjacent IS100 element. The remainder of this CDS is in YPCD1.97c. This region is also similar to TR:O68707 (EMBL:AF053946%2C AF074612) Y.pestis KIM5 putative transposase in pCD1 (390 aa). Contains probable helix-turn-helix motif at aa 19-40 (Score 1833%2C +5.43 SD) gene gene4082 http://www.ncbi.nlm.nih.gov/gene/?term= 3332894 3332969 - tRNA-Val tRNA Val anticodon TAC%2C Cove score 90.85 tRNA rna61 http://www.ncbi.nlm.nih.gov/gene/?term= YPCD1.72c YPCD1.72c 51473 53671 - putative targeted effector protein kinase YPCD1.72c%2C ypkA%2C probable targeted effector protein kinase%2C len: 732 aa%3B highly similar to corresponding CDS from Y.pestis KIM5 pCD1 (EMBL:AF053946%2C AF074612) (732 aa)%2C fasta scores%3B opt: 4736 z-score: 6189.9 E(): 0%2C 99.9%25 identity in 732 aa overlap and to YPKA_YERPS (EMBL:X69439)%2C ypkA%2C from Yersinia pseudotuberculosis plasmid pIB1 (732 aa) (99.7%25 identity in 732 aa overlap). Similar to TR:Q56921 (EMBL:U59895)%2C ypkA%2C from Yersinia enterocolitica plasmid pVY (728 aa) (96.3%25 identity in 729 aa overlap) and TR:O85239 (EMBL:AF054978)%2C yopO%2C from Y.enterocolitica plasmid pVY (729 aa) (97.0%25 identity in 729 aa overlap). Contains PS00108 Serine/Threonine protein kinases active-site signature. Contains probable coiled-coil from 594 to 631 (38 residues%2C probability 0.94). Contains a {ctg}4 and a c{8} repeat gene gene4151 http://www.ncbi.nlm.nih.gov/gene/?term= YPMT1.08c YPMT1.08c 11764 12561 - putative phage tail protein YPMT1.08c%2C possible phage tail protein%2C len: 265 aa%3B similar to VTAK_LAMBD (EMBL:J02459) bacteriophage lambda tail assembly protein K (199 aa)%2C fasta scores%3B opt: 263 z-score: 334.4 E(): 2.6e-11%2C 32.8%25 identity in 198 aa overlap and to TR:O64333 (EMBL:AF064539) bacteriophage N15 minor tail protein GP19 (243 aa) (35.1%25 identity in 251 aa overlap). Identical to ORF Y1047 (EMBL:AF074611) from Y.pestis KIM5 pMT1 (252 aa) (100.0%25 identity in 252 aa overlap) / TR:O68726 (EMBL:AF053947) from Y.pestis KIM5 pMT1 which have a different putative start codon gene gene4185 http://www.ncbi.nlm.nih.gov/gene/?term= YPMT1.87 YPMT1.87 89291 91657 + putative porphyrin biosynthetic protein YPMT1.87%2C possible porphyrin biosynthetic protein%2C len: 788 aa%3B weakly similar to COBT_PSEDE (EMBL:M62869)%2C cobT%2C Pseudomonas denitrificans cobalamin biosynthesis protein (631 aa)%2C fasta scores%3B opt: 279 z-score: 262.6 E(): 2.5e-07%2C 26.3%25 identity in 407 aa overlap. Identical to cobT (EMBL:AF074611) from Y.pestis KIM5 pMT1 (788 aa) (100.0%25 identity in 788 aa overlap) / TR:O68772 (EMBL:AF053947) from Y.pestis KIM5 pMT1 (784 aa) (100.0%25 identity in 784 aa overlap) which has a different putative start codon gene gene4277 http://www.ncbi.nlm.nih.gov/gene/?term= rnpB rnpB 3955749 3956125 - gene gene3491 http://www.ncbi.nlm.nih.gov/gene/?term= YPCD1.37c YPCD1.37c 26490 26861 - putative type III secretion protein YPCD1.37c%2C sycN%2C probable type III secretion protein%2C len: 123 aa%3B identical to corresponding CDS from Y.pestis KIM5 pCD1 (EMBL:AF053946%2C AF074612) (123 aa)%2C fasta scores%3B opt: 804 z-score: 1074.5 E(): 0%2C 99.2%25 identity in 123 aa overlap. Highly similar to TR:Q52095 (EMBL:M32097%2C AF054977) from Yersinia enterocolitica plasmid pYV (123 aa) (97.6%25 identity in 123 aa overlap) and similar to TR:O30533 (EMBL:AF010150)%2C pcr2%2C Pseudomonas aeruginosa type III secretion system component (123 aa) (46.7%25 identity in 122 aa overlap) gene gene4116 http://www.ncbi.nlm.nih.gov/gene/?term= YPPCP1.04 YPPCP1.04 4355 4780 + pesticin immunity protein YPPCP1.04%2C pim%2C pesticin immunity protein%2C len: 141 aa%3B identical to TR:Q57285 (EMBL:Z54145%2C X92856) gene gene4283 http://www.ncbi.nlm.nih.gov/gene/?term= YPMT1.60c YPMT1.60c 61340 61570 - hypothetical protein YPMT1.60c YPMT1.60c%2C conserved hypothetical protein%2C len: 76 aa%3B unknown function%2C similar to e.g. ORF L7085 (EMBL:AF074613) Escherichia coli hypothetical protein from plasmid pO157 (86 aa)%2C fasta scores%3B opt: 318 z-score: 470.3 E(): 6.8e-19%2C 62.3%25 identity in 77 aa overlap and YKFF_ECOLI (EMBL:AE000133) Escherichia coli hypothetical protein (79 aa) (55.4%25 identity in 74 aa overlap). Identical to ORF Y1091 (EMBL:AF074611) from Y.pestis KIM5 pMT1 (76 aa) (100.0%25 identity in 76 aa overlap) / TR:O68793 (EMBL:AF053947) from Y.pestis KIM5 pMT1 (76 aa) (100.0%25 identity in 76 aa overlap) gene gene4246 http://www.ncbi.nlm.nih.gov/gene/?term= YPMT1.65 YPMT1.65 65742 66050 + hypothetical protein YPMT1.65 YPMT1.65%2C hypothetical protein%2C len: 102 aa%3B unknown function%2C identical to ORF Y1083 (EMBL:AF074611) from Y.pestis KIM5 pMT1 (102 aa)%2C fasta scores%3B opt: 674 z-score: 874.5 E(): 0%2C 100.0%25 identity in 102 aa overlap gene gene4252 http://www.ncbi.nlm.nih.gov/gene/?term= YPCD1.49 YPCD1.49 36112 36927 + putative thermoregulatory protein YPCD1.49%2C lcrF%2C virF%2C probable thermoregulatory protein%2C len: 271 aa%3B identical to corresponding CDS from Y.pestis KIM5 pCD1 (EMBL:AF053946%2C AF074612) (271 aa)%2C fasta scores%3B opt: 1786 z-score: 2916.8 E(): 0%2C 100.0%25 identity in 271 aa overlap. Highly similar to VIRF_YEREN (EMBL:M22781)%2C virF%2C from Yersinia enterocolitica plasmid pYV (271 aa) (97.8%25 identity in 271 aa overlap). Similar to EXSA_PSEAE (EMBL:M64975)%2C exsA%2C Pseudomonas aeruginosa exoenzyme S synthesis regulatory protein A (298 aa) (57.0%25 identity in 263 aa overlap). Contains Pfam match to entry PF00165 HTH_2%2C Bacterial regulatory helix-turn-helix proteins%2C araC family%2C score 123.30%2C E-value 4.5e-33 and PS00041 Bacterial regulatory proteins%2C araC family signature gene gene4128 http://www.ncbi.nlm.nih.gov/gene/?term= YPMT1.63Ac YPMT1.63Ac 64451 64672 - hypothetical protein YPMT1.63Ac YPMT1.63Ac%2C conserved hypothetical protein%2C len: 73 aa%3B unknown function%2C similar to TR:AAD47179 (EMBL:AF106329) Escherichia coli hypothetical protein from the F plasmid (73 aa)%2C fasta scores%3B opt: 400 z-score: 634.7 E(): 5.7e-28%2C 82.2%25 identity in 73 aa overlap and to TR:Q9Z4D9 (EMBL:AB021078)%2C yceA%2C Escherichia coli hypothetical protein from plasmid IncI1 ColIb-P9 (73 aa)%2C fasta scores opt: 368 z-score: 585.5 E(): 3.1e-25%2C 75.3%25 identity in 73 aa overlap. Identical to ORF Y1086 (EMBL:AF074611) from Y.pestis KIM5 pMT1 (100.0%25 identity in 73 aa overlap) gene gene4250 http://www.ncbi.nlm.nih.gov/gene/?term= YPCD1.40 YPCD1.40 28186 29505 + putative Yops secretion ATP synthase YPCD1.40%2C yscN%2C probable Yop secretion ATP synthase%2C len: 439 aa%3B identical to corresponding CDS from Y.pestis KIM5 pCD1 (EMBL:AF053946%2C AF074612) (439 aa)%2C fasta scores%3B opt: 2844 z-score: 3462.1 E(): 0%2C 100.0%25 identity in 439 aa overlap. Highly similar to YSCN_YEREN (EMBL:U02499)%2C yscN%2C from Yersinia enterocolitica plasmid pYV227 (439 aa) (99.8%25 identity in 439 aa overlap) and YSCN_YERPS (EMBL:U00998)%2C yscN%2C from Yersinia pseudotuberculosis plasmid pIB1 (439 aa) (99.3%25 identity in 439 aa overlap). Similar to many other putative transport ATPases e.g. SSAN_SALTY (EMBL:Y09357)%2C ssaN%2C Salmonella typhimurium probable secretion system apparatus ATP synthase (433 aa) (56.6%25 identity in 401 aa overlap) and to ATP synthase beta subunits e.g. ATPB_ECOLI (EMBL:X01631) E.coli ATP synthase beta chain (459 aa) (29.06%25 identity in 406 aa overlap). Contains Pfam match to entry PF00006 ATP-synt_ab%2C ATP synthase alpha and beta subunits%2C score 534.80%2C E-value 6e-157 and PS00017 ATP/GTP-binding site motif A (P-loop). Contains a g{9} repeat gene gene4119 http://www.ncbi.nlm.nih.gov/gene/?term= YPMT1.46Ac YPMT1.46Ac 48664 48843 - hypothetical protein YPMT1.46Ac YPMT1.46Ac%2C hypothetical protein%2C len: 59 aa%3B unknown function gene gene4229 http://www.ncbi.nlm.nih.gov/gene/?term= 2115243 2115328 + tRNA-Leu tRNA Leu anticodon TAA%2C Cove score 73.10 tRNA rna45 http://www.ncbi.nlm.nih.gov/gene/?term= 23S_rRNA 23S_rRNA 4218350 4221256 - match to 23S_rRNA 1..2906 (Y. enterocolitica 23S EMBL:U77925) rRNA gene3712 http://www.ncbi.nlm.nih.gov/gene/?term= 3335986 3336061 + tRNA-Ala tRNA Ala anticodon GGC%2C Cove score 86.95 tRNA rna65 http://www.ncbi.nlm.nih.gov/gene/?term= YPCD1.46 YPCD1.46 33168 33953 + putative type III secretion protein YPCD1.46%2C yscT%2C probable type III secretion protein%2C len: 261 aa%3B identical to corresponding CDS from Y.pestis KIM5 pCD1 (EMBL:AF053946%2C AF074612) (261 aa)%2C fasta scores%3B opt: 1656 z-score: 2658.1 E(): 0%2C 100.0%25 identity in 261 aa overlap and to YSCT_YERPS (EMBL:L25667)%2C yscT%2C from Yersinia pseudotuberculosis plasmid pIB1. Similar to other bacterial type III secretion components e.g. TR:Q46648 (EMBL:L25828)%2C hrcT%2C Erwinia amylovora putative harpin secretion protein (265 aa) (34.2%25 identity in 257 aa overlap) and SSAT_SALTY (EMBL:X99944)%2C ssaT%2C Salmonella typhimurium secretion system protein (259 aa) (32.2%25 identity in 242 aa overlap). Contains Pfam match to entry PF01311 Bac_export_1%2C Bacterial export proteins%2C family 1%2C score 383.80%2C E-value 1.7e-111 gene gene4125 http://www.ncbi.nlm.nih.gov/gene/?term= YPPCP1.09c YPPCP1.09c 8089 8436 - hypothetical protein YPPCP1.09c%2C unknown%2C len: 115 aa%3B similar to two hypothetical proteins from M. tuberculosis TR:O53468 (EMBL:O53468) MTV018.09C (Rv2022c) (201 aa)%2C fasta scores%3B opt: 271 z-score: 398.5 E(): 6.7e-15%2C 41.7%25 identity in 108 aa overlap%2C and TR:O53332 (EMBL:AL021646) MTV014.26 (Rv3182) (114 aa)%2C fasta scores%3B opt: 214 z-score: 320.5 E(): 1.5e-10%2C 39.4%25 identity in 104 aa overlap gene gene4288 http://www.ncbi.nlm.nih.gov/gene/?term= YPMT1.28c YPMT1.28c 30707 31375 - hypothetical protein YPMT1.28c YPMT1.28c%2C hypothetical protein%2C len: 222 aa%3B unknown function%2C N-terminus similar to YNAK_ECOLI (EMBL:AE000233) E.coli hypothetical protein (87 aa)%2C fasta scores%3B opt: 224 z-score: 269.1 E(): 1.1e-07%2C 40.5%25 identity in 84 aa overlap and TR:O06671 (EMBL:AF000658) Streptococcus pneumoniae hypothetical protein (252 aa) (27.6%25 identity in 152 aa overlap). Identical to ORF Y1024 (EMBL:AF074611) from Y.pestis KIM5 pMT1 (233 aa) (99.6%25 identity in 233 aa overlap) / TR:O68746 (EMBL:AF053947) from Y.pestis KIM5 pMT1 (222 aa) (100.0%25 identity in 222 aa overlap) which have different putative start codons gene gene4207 http://www.ncbi.nlm.nih.gov/gene/?term= YPMT1.89 YPMT1.89 93170 96208 + putative DNA polymerase III pseudogene YPMT1.89%2C probable DNA polymerase III pseudogene%2C len: 3039 bp%3B identical to the N-terminal region of putative DNA polymerase III%2C alpha subunit%2C ORF Y1106 (EMBL:AF074611) from Y.pestis KIM5 pMT1 (1174 aa) / TR:O68770 (EMBL:AF053947) from Y.pestis KIM5 pMT1 (1135 aa). YPMT1.56c is the C-terminus of the same gene pseudogene gene4279 http://www.ncbi.nlm.nih.gov/gene/?term= YPCD1.74c YPCD1.74c 54368 54484 - CAB54951.1 YPCD1.74c%2C duplicated N-terminus of upstream nuc gene%2C len: 39 aa gene gene4153 http://www.ncbi.nlm.nih.gov/gene/?term= YPCD1.19c YPCD1.19c 11562 12110 - putative virulence determinant protein YPCD1.19c%2C yopK%2C yopQ%2C probable virulence determinant protein%2C len: 182 aa%3B identical to corresponding CDS from Y.pestis KIM5 pCD1 (EMBL:AF053946%2C AF074612) (182 aa)%2C fasta scores%3B opt: 1216 z-score: 2352.7 E(): 0%2C 100.0%25 identity in 182 aa overlap. Highly similar to TR:Q56935 (EMBL:U18804)%2C yopK from Yersinia pseudotuberculosis (182 aa) (99.5%25 identity in 182 aa overlap) and YOPQ_YEREN (EMBL:X52753)%2C yopQ from Yersinia enterocolitica (182 aa) (95.1%25 identity in 182 aa overlap) gene gene4098 http://www.ncbi.nlm.nih.gov/gene/?term= YPCD1.96c YPCD1.96c 68947 69378 - putative transposase YPCD1.96c%2C probable transposase%2C len: 143 aa%3B identical to corresponding CDS TR:O68708 from Y.pestis KIM5 pCD1 (EMBL:AF053946) (143 aa)%2C fasta scores%3B opt: 952 z-score: 1697.7 E(): 0%2C 100.0%25 identity in 143 aa overlap. Highly similar to the N-terminal half of ISTB_ECOLI (EMBL:X14793)%2C istB%2C E.coli insertion sequence IS21 putative ATP-binding protein (265 aa) (97.0%25 identity in 133 aa overlap) and TR:P74994 (EMBL:AF053947) Y.pestis KIM5 plasmid pMT1 IS100 putative transposase (259 aa) (44.2%25 identity in 129 aa overlap). Contains PS00017 ATP/GTP-binding site motif A (P-loop) gene gene4175 http://www.ncbi.nlm.nih.gov/gene/?term= YPMT1.14c YPMT1.14c 19031 19777 - hypothetical protein YPMT1.14c YPMT1.14c%2C hypothetical protein%2C len: 248 aa%3B unknown function%2C identical to ORF Y1041 (EMBL:AF074611) from Y.pestis KIM5 pMT1 (248 aa)%2C fasta scores%3B opt: 1547 z-score: 1665.3 E(): 0%2C 100.0%25 identity in 248 aa overlap and TR:O68731 (EMBL:AF053947) from Y.pestis KIM5 pMT1 (248 aa) (100.0%25 identity in 248 aa overlap). C-terminus similar to TR:O68736 (EMBL:AF053947) hypothetical protein from Y.pestis KIM5 pMT1 (143 aa) (43.0%25 identity in 86 aa overlap) and ORF Y1035 (EMBL:AF074611) hypothetical protein from Y.pestis KIM5 pMT1 (220 aa) (34.0%25 identity in 191 aa overlap) gene gene4191 http://www.ncbi.nlm.nih.gov/gene/?term= YPCD1.77c YPCD1.77c 56291 57157 - putative replication initiation protein YPCD1.77c%2C repA%2C repA1%2C probable replication initiation protein%2C len: 288 aa%3B identical to corresponding CDS from Y.pestis KIM5 pCD1 (EMBL:AF053946%2C AF074612) (288 aa)%2C fasta scores%3B opt: 1886 z-score: 3048.8 E(): 0%2C 99.7%25 identity in 288 aa overlap. Highly similar to many e.g. REP2_ECOLI (EMBL:M26840)%2C repA%2C E.coli replication initiation protein from incFII plasmids (285 aa) (77.6%25 identity in 281 aa overlap) gene gene4156 http://www.ncbi.nlm.nih.gov/gene/?term= YPCD1.69 YPCD1.69 49044 49625 + CAB54946.1 YPCD1.69%2C probable transposase remnant%2C len: 193 aa%3B similar to TR:Q46612 (EMBL:X78052)%2C putative transposase ORFB from Enterobacter agglomerans IS1222 (276 aa) (44.0%25 identity in 191 aa overlap). The N-terminus and upstream ORFA are not present gene gene4148 http://www.ncbi.nlm.nih.gov/gene/?term= YPMT1.26c YPMT1.26c 28929 29828 - hypothetical protein YPMT1.26c YPMT1.26c%2C hypothetical protein%2C len: 299 aa%3B unknown function%2C identical to ORF Y1027 (EMBL:AF074611) from Y.pestis KIM5 pMT1 (299 aa)%2C fasta scores%3B opt: 1986 z-score: 2370.4 E(): 0%2C 99.7%25 identity in 299 aa overlap / TR:O68744 (EMBL:AF053947) from Y.pestis KIM5 pMT1 (296 aa) (100.0%25 identity in 296 aa overlap) which has a different putative start codon gene gene4204 http://www.ncbi.nlm.nih.gov/gene/?term= 5S_rRNA 5S_rRNA 3648969 3649202 - match to 5SrRNA 1..234 blast score 1149 percent identity 99 (incl. 23S-5S spacer) rRNA gene3221 http://www.ncbi.nlm.nih.gov/gene/?term= YPCD1.15c YPCD1.15c 9429 9887 - hypothetical protein YPCD1.15c YPCD1.15c%2C hypothetical protein%2C len: 152 aa%3B unknown function%2C similar to many putative transposases e.g. L7046 in E.coli plasmid pO157 (EMBL:AF074613) putative transposase ORFB of IS911. Contains ORF Y0001 from Y.pestis KIM5 pCD1 (EMBL:AF074612) gene gene4094 http://www.ncbi.nlm.nih.gov/gene/?term= YPCD1.89 YPCD1.89 62474 62854 + CAB54966.1 YPCD1.89%2C possible transposase remnant%2C len: 126 aa%3B identical to corresponding CDS from Y.pestis KIM5 pCD1 (EMBL:AF053946) (126 aa)%2C fasta scores%3B opt: 869 z-score: 1640.5 E(): 0%2C 99.2%25 identity in 126 aa overlap. Similar to TR:O31218 (EMBL:AF034211) Desulfovibrio vulgaris insertion sequence ISD1 transposase ORFB (fragment) (310 aa) gene gene4168 http://www.ncbi.nlm.nih.gov/gene/?term= YPCD1.80c YPCD1.80c 57861 58106 - putative pseudogene YPCD1.80c%2C possible pseudogene%2C len: 246 bp%3B similar to several e.g. TR:O07482 (EMBL:Y13308) from a Yersinia enterocolitica plasmid (182 aa). Similarity ends at junction with upstream repeat element pseudogene gene4159 http://www.ncbi.nlm.nih.gov/gene/?term= 4175170 4175245 - tRNA-Thr tRNA Thr anticodon GGT%2C Cove score 88.70 tRNA rna80 http://www.ncbi.nlm.nih.gov/gene/?term= YPMT1.85 YPMT1.85 87147 88325 + putative integrase YPMT1.85%2C possible integrase%2C len: 392 aa%3B weakly similar to INTA_ECOLI (EMBL:U03737)%2C intA%2C Escherichia coli prophage CP4-57 integrase (413 aa)%2C fasta scores%3B opt: 210 z-score: 255.3 E(): 6.4e-07%2C 22.1%25 identity in 263 aa overlap. Identical to ORF Y1101 (EMBL:AF074611) from Y.pestis KIM5 pMT1 (392 aa) (99.7%25 identity in 392 aa overlap). Contains probable coiled-coil from 434 to 465 (32 residues) (Max score: 1.490%2C probability 0.94). Contains Pfam match to entry PF00589 Phage_integrase%2C 'Phage' integrase family%2C score 29.10%2C E-value 7.9e-07 gene gene4274 http://www.ncbi.nlm.nih.gov/gene/?term= YPCD1.58 YPCD1.58 42133 42480 + putative type III secretion protein YPCD1.58%2C yscI%2C lcrO%2C probable type III secretion protein%2C len: 115 aa%3B identical to corresponding CDS from Y.pestis KIM5 pCD1 (EMBL:AF053946%2C AF074612) (115 aa)%2C fasta scores%3B opt: 720 z-score: 1439.8 E(): 0%2C 100.0%25 identity in 115 aa overlap and to YSCI_YERPS (EMBL:M83986)%2C yscI%2C from Yersinia pseudotuberculosis plasmid pIB1. Highly similar to YSCI_YEREN (EMBL:M74011)%2C yscI%2C from Yersinia enterocolitica plasmid pYV (115 aa) (96.5%25 identity in 115 aa overlap). Similar to TR:P95437 (EMBL:U56077)%2C pscI%2C Pseudomonas aeruginosa exoenzyme S secretion protein (113 aa) (51.4%25 identity in 107 aa overlap) gene gene4137 http://www.ncbi.nlm.nih.gov/gene/?term= YPMT1.54 YPMT1.54 55745 56308 + hypothetical protein YPMT1.54 YPMT1.54%2C hypothetical protein%2C len: 187 aa%3B unknown function%2C identical to ORF Y1108 (EMBL:AF074611) from Y.pestis KIM5 pMT1 (187 aa)%2C fasta scores%3B opt: 1224 z-score: 1434.0 E(): 0%2C 100.0%25 identity in 187 aa overlap / TR:O68768 (EMBL:AF053947) from Y.pestis KIM5 pMT1 (187 aa) (100.0%25 identity in 187 aa overlap). Contains probable helix-turn-helix motif at aa 81-102 (Score 1497%2C +4.29 SD) gene gene4240 http://www.ncbi.nlm.nih.gov/gene/?term= YPCD1.39c YPCD1.39c 27107 27988 - putative membrane-bound Yop targeting protein YPCD1.39c%2C yopN%2C lcrE%2C probable membrane-bound Yop targeting protein%2C len: 293 aa%3B identical to corresponding CDS from Y.pestis KIM5 pCD1 (EMBL:AF053946%2C AF074612) (293 aa)%2C fasta scores%3B opt: 1873 z-score: 3045.8 E(): 0%2C 100.0%25 identity in 293 aa overlap and to YOPN_YERPS (EMBL:X51833)%2C yopN from Yersinia pseudotuberculosis plasmid pIB1. Highly similar to TR:O68333 (EMBL:AF033863)%2C yopN from Yersinia enterocolitica plasmid pYV (293 aa) (95.6%25 identity in 293 aa overlap). Similar to TR:O30531 (EMBL:AF010150)%2C popN%2C Pseudomonas aeruginosa type III secretion system component (288 aa) (47.5%25 identity in 276 aa overlap). Contains probable coiled-coil from 61 to 100 (40 residues%2C probability 0.94) gene gene4118 http://www.ncbi.nlm.nih.gov/gene/?term= YPMT1.29c YPMT1.29c 31375 32073 - hypothetical protein YPMT1.29c YPMT1.29c%2C hypothetical protein%2C len: 232 aa%3B unknown function%2C identical to ORF Y1023 (EMBL:AF074611) from Y.pestis KIM5 pMT1 (232 aa)%2C fasta scores%3B opt: 1495 z-score: 1681.6 E(): 0%2C 100.0%25 identity in 232 aa overlap / TR:O68747 (EMBL:AF053947) from Y.pestis KIM5 pMT1 (226 aa) (100.0%25 identity in 226 aa overlap) which has a different putative start codon gene gene4208 http://www.ncbi.nlm.nih.gov/gene/?term= YPMT1.56c YPMT1.56c 56778 57266 - putative DNA polymerase III pseudogene YPMT1.56c%2C probable DNA polymerase III pseudogene%2C len: 489 bp%3B identical to the C-terminus of putative DNA polymerase III%2C alpha subunit%2C ORF Y1106 (EMBL:AF074611) from Y.pestis KIM5 pMT1 (1174 aa) / TR:O68770 (EMBL:AF053947) from Y.pestis KIM5 pMT1 (1135 aa). YPMT1.89 is the N-terminal region of the same gene pseudogene gene4242 http://www.ncbi.nlm.nih.gov/gene/?term= 5S_rRNA 5S_rRNA 17178 17411 + match to 5SrRNA 1..234 blast score 1149 percent identity 99 (incl. 23S-5S spacer) rRNA gene12 http://www.ncbi.nlm.nih.gov/gene/?term= YPPCP1.01 YPPCP1.01 87 1109 + putative transposase YPPCP1.01%2C probable IS100 transposase%2C len: 340 aa%3B identical to TR:P74993%2C and simlar to e.g. TRA6_BACST putative transposase for insertion sequence element IS5376 (400 aa)%2C fasta scores%3B opt: 632 z-score: 1097.4 E(): 0%2C 38.1%25 identity in 328 aa overlap. Contains helix-turn-helix motif from aa 19-40 (Score 2045%2C +6.15 SD) gene gene4280 http://www.ncbi.nlm.nih.gov/gene/?term= YPCD1.08c YPCD1.08c 4399 4698 - hypothetical protein YPCD1.08c YPCD1.08c%2C Y0075%2C hypothetical protein%2C len: 99 aa%3B unknown function%2C identical to Y0075 (EMBL:AF074612) Y.pestis KIM5 hypothetical protein (99 aa)%2C fasta scores%3B opt: 655 z-score: 1330.8 E(): 0%2C 99.0%25 identity in 99 aa overlap. Also similar to TR:O68848 (EMBL:AF055586) Vibrio cholerae hypothetical protein associated with repeated sequences (105 aa) (43.0%25 identity in 86 aa overlap) gene gene4087 http://www.ncbi.nlm.nih.gov/gene/?term= ffs ffs 3498454 3498573 - gene gene3086 http://www.ncbi.nlm.nih.gov/gene/?term= YPCD1.01 YPCD1.01 88 1110 + putative transposase YPCD1.01%2C probable transposase%2C len: 340 aa%3B putative insertion sequence IS100%2C identical to corresponding CDS from Y.pestis KIM5 pCD1 (EMBL:AF053946%2C AF074612) (340 aa)%2C fasta scores%3B opt: 2328 z-score: 3808.9 E(): 0%2C 100.0%25 identity in 340 aa overlap. Similar to many others e.g. TRA0_ECOLI (EMBL:X14793)%2C istA%2C E.coli transposase for insertion sequence element IS21 (390 aa) (33.1%25 identity in 329 aa overlap). Contains Pfam match to entry PF00239 recombinase%2C Site-specific recombinases%2C score 25.70%2C E-value 4.8e-06. Contains probable helix-turn-helix motif at aa 19-40 (Score 2045%2C +6.15 SD) gene gene4080 http://www.ncbi.nlm.nih.gov/gene/?term= YPCD1.70c YPCD1.70c 49657 49755 - CAB54947.1 YPCD1.70c%2C possible transposase remnant%2C len: 33 aa%3B similar to part of YIS5_SHISO (EMBL:X05955) Shigella sonnei insertion element IS630 hypothetical protein (343 aa) (60.6%25 identity in 33 aa overlap) gene gene4149 http://www.ncbi.nlm.nih.gov/gene/?term= 5S_rRNA 5S_rRNA 4218117 4218350 - match to 5SrRNA 1..234 blast score 1149 percent identity 99 (incl. 23S-5S spacer) rRNA gene3711 http://www.ncbi.nlm.nih.gov/gene/?term= YPCD1.30c YPCD1.30c 21416 21922 - putative yopB/yopD chaperone YPCD1.30c%2C lcrH%2C sycD%2C probable yopB/yopD targeting protein%2C len: 168 aa%3B identical to to corresponding CDS from Y.pestis KIM5 pCD1 (EMBL:AF053946%2C AF074612) (168 aa)%2C fasta scores%3B opt: 1100 z-score: 2161.1 E(): 0%2C 100.0%25 identity in 168 aa overlap. Highly similar to LCRH_YERPS (EMBL:M57893)%2C lcrH%2C from Yersinia pseudotuberculosis plasmid pIB1 (168 aa) (99.4%25 identity in 168 aa overlap) and TR:O87496 (EMBL:AF080155)%2C sycD%2C from Yersinia enterocolitica plasmid pYV (168 aa) (97.6%25 identity in 168 aa overlap). Also similar to others e.g. TR:O30528 (EMBL:AF010149)%2C pcrH%2C Pseudomonas aeruginosa type III secretion system component (168 aa) (58.4%25 identity in 166 aa overlap) gene gene4109 http://www.ncbi.nlm.nih.gov/gene/?term= 3332619 3332694 - tRNA-Lys tRNA Lys anticodon TTT%2C Cove score 95.27 tRNA rna60 http://www.ncbi.nlm.nih.gov/gene/?term= YPCD1.25 YPCD1.25 15976 16293 + CAB54902.1 YPCD1.25%2C possible transposase remnant%2C len: 105 aa%3B highly similar to region of TR:O68779 (EMBL:AF053947)%2C putative transposase from Y.pestis plasmid pMT1 (402 aa) and many known and putative transposases e.g. TRA3_RHIME (EMBL:M60971) Rhizobium meliloti transposase for insertion sequence element ISRm3 (400 aa) gene gene4104 http://www.ncbi.nlm.nih.gov/gene/?term= 23S_rRNA 23S_rRNA 1219485 1222391 + match to 23S_rRNA 1..2906 (Y. enterocolitica 23S EMBL:U77925) rRNA gene1074 http://www.ncbi.nlm.nih.gov/gene/?term= 3065197 3065271 + tRNA-Arg tRNA Arg anticodon CCT%2C Cove score 71.72 tRNA rna58 http://www.ncbi.nlm.nih.gov/gene/?term= 1165010 1165086 - tRNA-Met tRNA Met anticodon CAT%2C Cove score 86.07 tRNA rna18 http://www.ncbi.nlm.nih.gov/gene/?term= YPMT1.19c YPMT1.19c 21976 22410 - hypothetical protein YPMT1.19c YPMT1.19c%2C hypothetical protein%2C len: 144 aa%3B unknown function%2C identical to ORF Y1036 (EMBL:AF074611) from Y.pestis KIM5 pMT1 (144 aa)%2C fasta scores%3B opt: 924 z-score: 1079.7 E(): 0%2C 100.0%25 identity in 144 aa overlap / TR:O68735 (EMBL:AF053947) from Y.pestis KIM5 pMT1 (99 aa) (100.0%25 identity in 99 aa overlap) which has a different putative start codon gene gene4196 http://www.ncbi.nlm.nih.gov/gene/?term= YPMT1.10c YPMT1.10c 13342 13677 - putative phage tail protein YPMT1.10c%2C possible phage tail protein%2C len: 111 aa%3B similar to VMTM_LAMBD (EMBL:J02459) bacteriophage lambda minor tail protein M (109 aa)%2C fasta scores%3B opt: 152 z-score: 208.6 E(): 0.00026%2C 26.7%25 identity in 105 aa overlap and to TR:O64331 (EMBL:AF064539) bacteriophage N15 minor tail protein GP17 (115 aa) (30.0%25 identity in 110 aa overlap). Identical to ORF Y1045 (EMBL:AF074611) from Y.pestis KIM5 pMT1 (111 aa) (100.0%25 identity in 111 aa overlap) / TR:O68728 (EMBL:AF053947) from Y.pestis KIM5 pMT1 (111 aa) (100.0%25 identity in 111 aa overlap) gene gene4187 http://www.ncbi.nlm.nih.gov/gene/?term= YPCD1.59 YPCD1.59 42487 43221 + putative type III secretion lipoprotein YPCD1.59%2C yscJ%2C ylpB%2C probable type III secretion lipoprotein%2C len: 244 aa%3B identical to corresponding CDS from Y.pestis KIM5 pCD1 (EMBL:AF053946%2C AF074612) (244 aa)%2C fasta scores%3B opt: 1516 z-score: 2669.8 E(): 0%2C 99.6%25 identity in 244 aa overlap and to YSCJ_YERPS (EMBL:M83986)%2C yscJ%2C from Yersinia pseudotuberculosis plasmid pIB1. Highly similar to YSCJ_YEREN (EMBL:M74011)%2C yscJ%2C from Yersinia enterocolitica plasmid pYV (244 aa) (99.2%25 identity in 244 aa overlap). Similar to many other bacterial type III secretion components e.g. TR:P95438 (EMBL:U56077)%2C pscJ%2C Pseudomonas aeruginosa exoenzyme S secretion protein (248 aa) (70.2%25 identity in 245 aa overlap). Contains appropriately positioned PS00013 Prokaryotic membrane lipoprotein lipid attachment site gene gene4138 http://www.ncbi.nlm.nih.gov/gene/?term= YPMT1.46c YPMT1.46c 48332 48667 - hypothetical protein YPMT1.46c YPMT1.46c%2C hypothetical protein%2C len: 111 aa%3B unknown function%2C identical to ORF Y1118 (EMBL:AF074611) from Y.pestis KIM5 pMT1 (111 aa)%2C fasta scores%3B opt: 730 z-score: 964.3 E(): 0%2C100.0%25 identity in 111 aa overlap / TR:O68761 (EMBL:AF053947) from Y.pestis KIM5 pMT1 (86 aa) (100.0%25 identity in 86 aa overlap) which has a different putative start codon gene gene4228 http://www.ncbi.nlm.nih.gov/gene/?term= 4325661 4325737 - tRNA-Arg tRNA Arg anticodon CCG%2C Cove score 91.00 tRNA rna98 http://www.ncbi.nlm.nih.gov/gene/?term= YPCD1.82c YPCD1.82c 58523 58930 - hypothetical protein YPCD1.82c YPCD1.82c%2C Y0001%2C hypothetical protein%2C len: 135 aa%3B unknown function%2C identical to ORF Y0001 (103 aa) in Y.pestis KIM5 pCD1 (EMBL:AF074612)%2C but with a putative start codon 32 codons upstream%2C fasta scores%3B opt: 715 z-score: 1351.2 E(): 0%2C 99.0%25 identity in 103 aa overlap. Shows similarity to the N-terminal half of TRA5_ECOLI (EMBL:X02311) E.coli IS3 transposase (288 aa) (30.5%25 identity in 154 aa overlap) gene gene4161 http://www.ncbi.nlm.nih.gov/gene/?term= 4384336 4384411 - tRNA-Trp tRNA Trp anticodon CCA%2C Cove score 82.06 tRNA rna99 http://www.ncbi.nlm.nih.gov/gene/?term= YPCD1.41 YPCD1.41 29502 29966 + putative type III secretion protein YPCD1.41%2C yscO%2C probable type III secretion protein%2C len: 154 aa%3B identical to corresponding CDS from Y.pestis KIM5 pCD1 (EMBL:AF053946%2C AF074612) (154 aa)%2C fasta scores%3B opt: 1026 z-score: 1732.5 E(): 0%2C 100.0%25 identity in 154 aa overlap and highly similar to YSCO_YERPS (EMBL:L25667)%2C yscO%2C from Yersinia pseudotuberculosis plasmid pIB1 (154 aa) (98.7%25 identity in 154 aa overlap). Similar to the partial sequence of TR:O30539 (EMBL:AF010151) Pseudomonas aeruginosa pscO (141 aa) (40.4%25 identity in 136 aa overlap). Contains probable coiled-coil from 65 to 120 (56 residues%2C probability 1.00) gene gene4120 http://www.ncbi.nlm.nih.gov/gene/?term= 2298924 2299013 - tRNA-Ser tRNA Ser anticodon GGA%2C Cove score 59.10 tRNA rna48 http://www.ncbi.nlm.nih.gov/gene/?term= 4211164 4211238 - tRNA-Gly tRNA Gly anticodon TCC%2C Cove score 63.22 tRNA rna87 http://www.ncbi.nlm.nih.gov/gene/?term= spf spf 25879 25982 + gene gene20 http://www.ncbi.nlm.nih.gov/gene/?term= 2946029 2946103 - tRNA-Gln tRNA Gln anticodon CTG%2C Cove score 74.52 tRNA rna53 http://www.ncbi.nlm.nih.gov/gene/?term= YPMT1.23c YPMT1.23c 24949 26538 - hypothetical protein YPMT1.23c YPMT1.23c%2C hypothetical protein%2C len: 529 aa%3B unknown function%2C identical to ORF Y1031 (EMBL:AF074611) from Y.pestis KIM5 pMT1 (259 aa)%2C fasta scores%3B opt: 3506 z-score: 4012.6 E(): 0%2C 100.0%25 identity in 529 aa overlap / TR:O68740 (EMBL:AF053947) from Y.pestis KIM5 pMT1 (412 aa) (100.0%25 identity in 412 aa overlap) which has a different putative start codon gene gene4200 http://www.ncbi.nlm.nih.gov/gene/?term= 2946109 2946185 - tRNA-Met tRNA Met anticodon CAT%2C Cove score 94.35 tRNA rna54 http://www.ncbi.nlm.nih.gov/gene/?term= 3652327 3652402 - tRNA-Ala tRNA Ala anticodon TGC%2C Cove score 93.97 tRNA rna69 http://www.ncbi.nlm.nih.gov/gene/?term= YPMT1.15c YPMT1.15c 19852 20235 - hypothetical protein YPMT1.15c YPMT1.15c%2C hypothetical protein%2C len: 127 aa%3B unknown function%2C identical to ORF Y1040 (EMBL:AF074611) from Y.pestis KIM5 pMT1 (127 aa)%2C fasta scores%3B opt: 817 z-score: 1082.2 E(): 0%2C 99.2%25 identity in 127 aa overlap / TR:O68732 (EMBL:AF053947) from Y.pestis KIM5 pMT1 (118 aa) (100.0%25 identity in 118 aa overlap) which has a different putative start codon gene gene4192 http://www.ncbi.nlm.nih.gov/gene/?term= 1639663 1639750 + tRNA-Ser tRNA Ser anticodon TGA%2C Cove score 74.25 tRNA rna36 http://www.ncbi.nlm.nih.gov/gene/?term= YPMT1.76A YPMT1.76A 77219 77590 + hypothetical protein YPMT1.76A YPMT1.76A%2C conserved hypothetical protein%2C len: 123 aa%3B unknown function%2C similar to TR:P71289 (EMBL:U70214) Escherichia coli chromosomal hypothetical protein (145 aa)%2C fasta scores%3B opt: 742 z-score: 992.9 E(): 0%2C 87.0%25 identity in 123 aa overlap. Identical to ORF Y1066 (EMBL:AF074611) from Y.pestis KIM5 pMT1 (131 aa)%2C but with a different putative start codon%2C fasta scores%3B opt: 842 z-score: 1125.6 E(): 0%2C 100.0%25 identity in 123 aa overlap gene gene4265 http://www.ncbi.nlm.nih.gov/gene/?term= YPMT1.63c YPMT1.63c 64021 64512 - hypothetical protein YPMT1.63c YPMT1.63c%2C conserved hypothetical protein%2C len: 163 aa%3B unknown function%2C similar to TR:O82898 (EMBL:AB011549) Escherichia coli hypothetical protein from plasmid pO157 (184 aa)%2C opt: 587 z-score: 704.6 E(): 6.2e-32%2C 53.3%25 identity in 169 aa overlap. Identical to ORF Y1087 (EMBL:AF074611) from Y.pestis KIM5 pMT1 (163 aa) (100.0%25 identity in 163 aa overlap) / TR:O68790 (EMBL:AF053947) from Y.pestis KIM5 pMT1 (139 aa) (100.0%25 identity in 139 aa overlap) which has a different putative start codon gene gene4249 http://www.ncbi.nlm.nih.gov/gene/?term= YPMT1.61c YPMT1.61c 62283 62789 - putative antirestriction protein YPMT1.61c%2C probable antirestriction protein%2C len: 168 aa%3B similar to TR:Q52021 (EMBL:U72482)%2C ardA%2C Escherichia coli antirestriction protein from plasmid pKM101 (169 aa)%2C fasta scores%3B opt: 698 z-score: 847.0 E(): 0%2C 59.8%25 identity in 164 aa overlap. Identical to ORF Y1090 (EMBL:AF074611) from Y.pestis KIM5 pMT1 (168 aa) (100.0%25 identity in 168 aa overlap) / TR:O68792 (EMBL:AF053947) from Y.pestis KIM5 pMT1 (168 aa) (100.0%25 identity in 168 aa overlap) gene gene4247 http://www.ncbi.nlm.nih.gov/gene/?term= YPCD1.93 YPCD1.93 66932 67198 + putative transposase YPCD1.93%2C Y0084%2C probable transposase%2C len: 88 aa%3B identical to corresponding CDS Y0085 from Y.pestis KIM5 pCD1 (EMBL:AF053946%2C AF074612) (88 aa)%2C fasta scores%3B opt: 564 z-score: 1102.2 E(): 0%2C 100.0%25 identity in 88 aa overlap. Similar to many others e.g. YIA3_RHISP (EMBL:X06616) Rhizobium sp. insertion element ISR1 (88 aa) (53.4%25 identity in 88 aa overlap). Contains probable helix-turn-helix motif at aa 23-44 (Score 1884%2C +5.60 SD). Contains probable coiled-coil from 50 to 87 (38 residues%2C probability 1.00) gene gene4172 http://www.ncbi.nlm.nih.gov/gene/?term= YPCD1.62 YPCD1.62 44686 45033 + putative type III secretion regulatory protein YPCD1.62%2C yscM%2C lcrQ%2C probable type III secretion regulatory protein%2C len: 115 aa%3B identical to corresponding CDS from Y.pestis KIM5 pCD1 (EMBL:AF053946%2C AF074612) (115 aa)%2C fasta scores%3B opt: 713 z-score: 1420.0 E(): 0%2C 100.0%25 identity in 115 aa overlap and to YSCM_YERPS (EMBL:M83986)%2C yscM%2C from Yersinia pseudotuberculosis plasmid pIB1. Highly similar to YSCM_YEREN (EMBL:M74011)%2C yscM%2C from Yersinia enterocolitica plasmid pYV (115 aa) (99.1%25 identity in 115 aa overlap) and TR:O54481 (EMBL:U94827)%2C yscM2%2C also from Y.enterocolitica (116 aa) (59.1%25 identity in 110 aa overlap). Similar to internal sequence of Yersinia spp. yopH e.g. YOPH_YEREN (EMBL:M30457) Y.enterocolitica protein tyrosine phosphatase (468 aa) (43.0%25 identity in 79 aa overlap) gene gene4141 http://www.ncbi.nlm.nih.gov/gene/?term= 5S_rRNA 5S_rRNA 4175254 4175486 - match to 5SrRNA 1..233 blast score 1144 percent identity 99 (incl. 23S-5S spacer) rRNA gene3675 http://www.ncbi.nlm.nih.gov/gene/?term= ssrS ssrS 1001993 1002174 + gene gene909 http://www.ncbi.nlm.nih.gov/gene/?term= YPMT1.09c YPMT1.09c 12554 13285 - putative phage tail protein YPMT1.09c%2C possible phage tail protein%2C len: 243 aa%3B similar to VMTL_LAMBD (EMBL:J02459) bacteriophage lambda minor tail protein L (232 aa)%2C fasta scores%3B opt: 542 z-score: 670.1 E(): 5.2e-30%2C 39.7%25 identity in 219 aa overlap and to TR:O64332 (EMBL:AF064539) bacteriophage N15 minor tail protein GP18 (251 aa) (36.3%25 identity in 251 aa overlap). Identical to ORF Y1046 (EMBL:AF074611) from Y.pestis KIM5 pMT1 (243 aa) (100.0%25 identity in 243 aa overlap) / TR:O68727 (EMBL:AF053947) from Y.pestis KIM5 pMT1 (232 aa) (100.0%25 identity in 232 aa overlap) which has a different putative start codon gene gene4186 http://www.ncbi.nlm.nih.gov/gene/?term= YPMT1.13c YPMT1.13c 18654 18971 - hypothetical protein YPMT1.13c YPMT1.13c%2C hypothetical protein%2C len: 105 aa%3B unknown function%2C identical to ORF Y1042 (EMBL:AF074611) from Y.pestis KIM5 pMT1 (105 aa)%2C fasta scores%3B opt: 664 z-score: 837.5 E(): 0%2C 100.0%25 identity in 105 aa overlap and TR:O68730 (EMBL:AF053947) from Y.pestis KIM5 pMT1 (105 aa) (100.0%25 identity in 105 aa overlap) gene gene4190 http://www.ncbi.nlm.nih.gov/gene/?term= YPMT1.67c YPMT1.67c 67988 68959 - putative partitioning protein B YPMT1.67c%2C parB%2C probable partitioning protein B%2C len: 323 aa%3B similar to e.g. PARB_ECOLI (EMBL:X02954)%2C parB%2C Escherichia coli plasmid partition parB protein from plasmid P1 (343 aa)%2C fasta scores%3B opt: 725 z-score: 818.2 E(): 0%2C 44.4%25 identity in 302 aa overlap. Also similar to VIRB_SHIFL (EMBL:X14340)%2C virB%2C invE%2C Shigella flexneri virulence regulon transcriptional activator from plasmid pWR100 (309 aa) (43.1%25 identity in 297 aa overlap). Identical to parB (EMBL:AF074611) from Y.pestis KIM5 pMT1 (323 aa) (100.0%25 identity in 323 aa overlap) / TR:O68788 (EMBL:AF053947) from Y.pestis KIM5 pMT1 (323 aa) (100.0%25 identity in 323 aa overlap). Contains probable coiled-coil from 203 to 236 (34 residues) (Max score: 1.447%2C probability 0.87) gene gene4254 http://www.ncbi.nlm.nih.gov/gene/?term= YPMT1.68A YPMT1.68A 70463 70690 + hypothetical protein YPMT1.68A YPMT1.68A%2C hypothetical protein%2C len: 75 aa%3B unknown function%2C identical to ORF Y1075 (EMBL:AF074611) from Y.pestis KIM5 pMT1 (81 aa)%2C but with a different putative start codon%2C fasta scores%3B opt: 455 z-score: 626.1 E(): 1.7e-27%2C 100.0%25 identity in 75 aa overlap gene gene4256 http://www.ncbi.nlm.nih.gov/gene/?term= YPCD1.21 YPCD1.21 13578 13976 + putative yopT chaperone YPCD1.21%2C sycT%2C probable yopT chaperone%2C len: 132 aa%3B identical to corresponding CDS from Y.pestis KIM5 pCD1 (EMBL:AF053946%2C AF074612) (132 aa)%2C fasta scores%3B opt: 913 z-score: 1795.7 E(): 0%2C 100.0%25 identity in 132 aa overlap and highly similar to TR:O85243 (EMBL:AF054981)%2C sycT%2C from Yersinia enterocolitica plasmid pYV yopT chaperone (130 aa) (97.7%25 identity in 132 aa overlap) gene gene4100 http://www.ncbi.nlm.nih.gov/gene/?term= 16S_rRNA 16S_rRNA 4388245 4389733 - match to 16S_rRNA 1..1489 (EMBL:YPE16SA) rRNA gene3862 http://www.ncbi.nlm.nih.gov/gene/?term= YPPCP1.02 YPPCP1.02 1106 1888 + putative ATP-binding protein YPPCP1.02%2C IS100 ATP-binding protein%2C len: 260 aa%3B identical to TR:P74994 and similar to e.g. ISTB_ECOLI insertion sequence IS21 putative ATP-binding protein (265 aa)%2C fasta scores%3B opt: 730 z-score: 1078.9 E(): 0%2C 47.4%25 identity in 249 aa overlap. Contains PS00017 ATP/GTP-binding site motif A (P-loop) gene gene4281 http://www.ncbi.nlm.nih.gov/gene/?term= YPMT1.75c YPMT1.75c 76455 76925 - hypothetical protein YPMT1.75c YPMT1.75c%2C conserved hypothetical protein%2C len: 156 aa%3B similar to ORFs within group II introns e.g. the N-terminus of TR:Q46033 (EMBL:X98606) Clostridium difficile ORF (609 aa)%2C fasta scores%3B opt: 344 z-score: 429.5 E(): 1.3e-16%2C 41.9%25 identity in 148 aa overlap%2C some of which have been shown to have reverse-transcriptase and/or RNA maturase activities. Identical to ORF Y1068 (EMBL:AF074611) from Y.pestis KIM5 pMT1 (156 aa) (99.4%25 identity in 156 aa overlap) / TR:O68783 (EMBL:AF053947) from Y.pestis KIM5 pMT1 (151 aa) (100.0%25 identity in 151 aa overlap) which has a different putative start codon gene gene4263 http://www.ncbi.nlm.nih.gov/gene/?term= 16S_rRNA 16S_rRNA 12292 13763 + match to 16S_rRNA 1..1472 (EMBL:YPE16SA) rRNA gene10 http://www.ncbi.nlm.nih.gov/gene/?term= YPCD1.75c YPCD1.75c 54541 54693 - CAB54952.1 YPCD1.75c%2C possible transposase remnant%2C len: 51 aa%3B similar to parts of transposases e.g. (EMBL:AJ132945) Yersinia enterocolitica IS1329 transposase B (249 aa) (54.9%25 identity in 51 aa overlap) gene gene4154 http://www.ncbi.nlm.nih.gov/gene/?term= YPMT1.02 YPMT1.02 1106 1888 + putative transposase YPMT1.02%2C probable transposase%2C len: 260 aa%3B identical to insertion sequence IS100 transposases found in Y.pestis plasmids e.g. TR:P74994 (EMBL:AF053947) from KIM5 plasmid pMT1 (260 aa)%2C fasta scores%3B opt: 1658 z-score: 1841.0 E(): 0%2C 100.0%25 identity in 259 aa overlap and also in pathogenicity islands e.g. ORF11 (EMBL:AL031866) (259 aa) (100.0%25 identity in 259 aa overlap). Similar to many others e.g. ISTB_ECOLI (EMBL:X14793)%2C istB%2C E.coli transposase for insertion sequence element IS21 (265 aa) (47.4%25 identity in 249 aa overlap). Contains PS00017 ATP/GTP-binding site motif A (P-loop) gene gene4178 http://www.ncbi.nlm.nih.gov/gene/?term= YPCD1.17c YPCD1.17c 10338 11046 - putative lipoprotein precursor pseudogene YPCD1.17c%2C ylpA%2C probable lipoprotein precursor pseudogene%2C len: 709 bp%3B identical to corresponding pseudogene from Y.pestis KIM5 pCD1 (EMBL:AF053946%2C AF074612)%2C including the position and nature of the frameshift pseudogene gene4096 http://www.ncbi.nlm.nih.gov/gene/?term= YPMT1.83 YPMT1.83 83368 85869 + putative F1 capsule anchoring protein YPMT1.83%2C caf1A%2C probable F1 capsule anchoring protein%2C len: 833 aa%3B highly similar to CAFA_YERPE (EMBL:X61996) Yersinia pestis F1 capsule anchoring protein from plasmid pFRA (833 aa)%2C fasta scores%3B opt: 5556 z-score: 6311.1 E(): 0%2C 99.4%25 identity in 833 aa overlap. Similar to PSAC_YERPS (EMBL:L76301)%2C psaC%2C Yersina pseudotuberculosis outer membrane usher protein (823 aa) (40.1%25 identity in 826 aa overlap) and MYFC_YEREN (EMBL:Z21953)%2C myfC%2C Yersinia enterocolitica outer membrane usher protein (841 aa) (41.0%25 identity in 835 aa overlap). Identical to caf1A (EMBL:AF074611) from Y.pestis KIM5 pMT1 (833 aa) (100.0%25 identity in 833 aa overlap) / TR:O68773 (EMBL:AF053947) from Y.pestis KIM5 pMT1 (833 aa) (100.0%25 identity in 833 aa overlap). Contains Pfam match to entry PF00577 Usher%2C Fimbrial Usher proteins%2C score 1369.40%2C E-value 0 and PS01151 Fimbrial biogenesis outer membrane usher protein signature gene gene4272 http://www.ncbi.nlm.nih.gov/gene/?term= YPMT1.74 YPMT1.74 74612 76210 + murine toxin YPMT1.74%2C ymt%2C murine toxin%2C len: 532 aa%3B similar to TR:Q56977 (EMBL:X92727)%2C ymt%2C Yersinia pestis murine toxin from plasmid pFRA (531 aa)%2C fasta scores%3B opt: 3587 z-score: 4109.7 E(): 0%2C 99.6%25 identity in 532 aa overlap. Identical to ymt (EMBL:AF074611) from Y.pestis KIM5 pMT1 (587 aa) (100.0%25 identity in 532 aa overlap) which has a different putative start codon / TR:O68784 (EMBL:AF053947) from Y.pestis KIM5 pMT1 (532 aa) (100.0%25 identity in 532 aa overlap). Contains Pfam match to entry PF00614 PLDc%2C Phospholipase D. Active site motif%2C score 20.90%2C E-value 0.029 gene gene4262 http://www.ncbi.nlm.nih.gov/gene/?term= YPMT1.50Ac YPMT1.50Ac 52350 52616 - hypothetical protein YPMT1.50Ac YPMT1.50Ac%2C hypothetical protein%2C len: 88 aa%3B unknown function%2C identical to ORF Y1112 (EMBL:AF074611) from Y.pestis KIM5 pMT1 (88 aa)%2C fasta scores%3B opt: 545 z-score: 761.5 E(): 0%2C 100.0%25 identity in 88 aa overlap gene gene4236 http://www.ncbi.nlm.nih.gov/gene/?term= YPCD1.32c YPCD1.32c 22917 23204 - putative Yop regulator YPCD1.32c%2C lcrG%2C probable Yop regulator%2C len: 95 aa%3B identical to corresponding CDS from Y.pestis KIM5 pCD1 (EMBL:AF053946%2C AF074612) (95 aa)%2C fasta scores%3B opt: 632 z-score: 1173.8 E(): 0%2C 100.0%25 identity in 95 aa overlap. Identical to TR:O52157 (EMBL:AF022645)%2C lcrG%2C from Yersinia enterocolitica plasmid pYV (95 aa). Similar to TR:O30526 (EMBL:AF010149) Pseudomonas aeruginosa type III secretion system component (98 aa) (42.7%25 identity in 89 aa overlap). Contains probable coiled-coil from 5 to 37 (33 residues%2C probability 0.91) gene gene4111 http://www.ncbi.nlm.nih.gov/gene/?term= 1219157 1219232 + tRNA-Glu tRNA Glu anticodon TTC%2C Cove score 56.95 tRNA rna21 http://www.ncbi.nlm.nih.gov/gene/?term= YPCD1.36c YPCD1.36c 26125 26493 - putative type III secretion protein YPCD1.36c%2C yscX%2C probable type III secretion protein%2C len: 122 aa%3B identical to corresponding CDS from Y.pestis KIM5 pCD1 (EMBL:AF053946%2C AF074612) (122 aa)%2C fasta scores%3B opt: 802 z-score: 1406.4 E(): 0%2C 99.2%25 identity in 122 aa overlap. Highly similar to yscX (EMBL:AF054977) from Yersinia enterocolitica plasmid pYV (122 aa) (98.4%25 identity in 122 aa overlap) and similar to TR:O30534 (EMBL:AF010150)%2C pcr3%2C Pseudomonas aeruginosa type III secretion system component (121 aa) (49.2%25 identity in 122 aa overlap) gene gene4115 http://www.ncbi.nlm.nih.gov/gene/?term= 348756 348831 - tRNA-Phe tRNA Phe anticodon GAA%2C Cove score 84.11 tRNA rna7 http://www.ncbi.nlm.nih.gov/gene/?term= 4325502 4325577 - tRNA-His tRNA His anticodon GTG%2C Cove score 84.86 tRNA rna97 http://www.ncbi.nlm.nih.gov/gene/?term= YPMT1.58c YPMT1.58c 58112 59134 - putative transposase YPMT1.58c%2C IS100 transposase%2C len: 340 aa%3B identical to many other IS100 transposases e.g. TR:P74993 (EMBL:U59875) Yersinia pestis pesticin plasmid putative insertion sequence IS100 ORFA (340 aa)%2C fasta scores%3B opt: 2328 z-score: 2755.3 E(): 0%2C 100.0%25 identity in 340 aa overlap. Contains probable helix-turn-helix motif at aa 19-40 (Score 2045%2C +6.15 SD). Contains Pfam match to entry PF00239 recombinase%2C Site-specific recombinases%2C score 25.70%2C E-value 4.8e-06 gene gene4244 http://www.ncbi.nlm.nih.gov/gene/?term= YPCD1.11 YPCD1.11 5498 5629 + putative pseudogene YPCD1.11%2C possible pseudogene%2C len: 132 bp%3B similar to part of many DNA repair proteins e.g. UMUC_SALTY (EMBL:M57431) Salmonella typhimurium umuC protein (422 aa) pseudogene gene4090 http://www.ncbi.nlm.nih.gov/gene/?term= 3333014 3333089 - tRNA-Val tRNA Val anticodon TAC%2C Cove score 90.85 tRNA rna62 http://www.ncbi.nlm.nih.gov/gene/?term= YPMT1.42 YPMT1.42 43716 44738 + putative periplasmic protein YPMT1.42%2C possible periplasmic protein%2C len: 340 aa%3B similar to e.g. SSUA_BACSU (EMBL:L16808)%2C ssuA%2C Bacillus subtilis putative aliphatic sulfonates binding protein precursor (332 aa)%2C fasta scores%3B opt: 237 z-score: 281.4 E(): 2.3e-08%2C 24.3%25 identity in 350 aa overlap and TR:Q48929 (EMBL:U40213) Methanobacterium bryantii copper response extracellular protein (353 aa) (21.7%25 identity in 341 aa overlap). Unlike ssuA%2C it has no prokaryotic membrane lipoprotein lipid attachment site%2C but does have a potential N-terminal signal sequence. Identical to ORF Y1004 (EMBL:AF074611) from Y.pestis KIM5 pMT1 (340 aa) (100.0%25 identity in 340 aa overlap) gene gene4223 http://www.ncbi.nlm.nih.gov/gene/?term= YPCD1.35c YPCD1.35c 25784 26128 - putative type III secretion protein YPCD1.35c%2C yscY%2C probable type III secretion protein%2C len: 114 aa%3B identical to corresponding CDS from Y.pestis KIM5 pCD1 (EMBL:AF053946%2C AF074612) (114 aa)%2C fasta scores%3B opt: 787 z-score: 1516.3 E(): 0%2C 100.0%25 identity in 114 aa overlap and to yscY (EMBL:AF054977) from Yersinia enterocolitica plasmid pYV. Similar to TR:O30535 (EMBL:AF010150)%2C pcr4%2C Pseudomonas aeruginosa type III secretion system component (109 aa) (49.1%25 identity in 106 aa overlap) gene gene4114 http://www.ncbi.nlm.nih.gov/gene/?term= YPMT1.77c YPMT1.77c 77583 77666 - CAB55259.1 YPMT1.77c%2C possible transposase remnant%2C len: 28 aa%3B similar to many transposases e.g. YIS2_SHISO (EMBL:X05952) Shigella sonnei insertion element IS600 hypothetical 31 kD protein (272 aa) gene gene4266 http://www.ncbi.nlm.nih.gov/gene/?term= 447362 447448 - tRNA-Leu tRNA Leu anticodon CAG%2C Cove score 64.60 tRNA rna9 http://www.ncbi.nlm.nih.gov/gene/?term= YPCD1.43 YPCD1.43 31330 32253 + putative type III secretion protein YPCD1.43%2C yscQ%2C probable type III secretion protein%2C len: 307 aa%3B identical to corresponding CDS from Y.pestis KIM5 pCD1 (EMBL:AF053946%2C AF074612) (307 aa)%2C fasta scores%3B opt: 2023 z-score: 3242.7 E(): 0%2C 100.0%25 identity in 307 aa overlap. Highly similar to YSCQ_YERPS (EMBL:L25667)%2C yscQ%2C from Yersinia pseudotuberculosis plasmid pIB1 (307 aa) (99.3%25 identity in 307 aa overlap). Weak similarity to e.g. SPAO_SALTI (EMBL:U29363)%2C spaO%2C Salmonella typhi surface antigen presentation protein (303 aa) (29.5%25 identity in 241 aa overlap) and putative nodulation-control proteins e.g. TR:P72274 (EMBL:L12251)%2C hcrQ%2C Rhizobium fredii nodulation protein (382 aa) (27.7%25 identity in 220 aa overlap). Contains Pfam match to entry PF01052 SpoA%2C Surface presentation of antigens (SPOA) protein%2C score 424.60%2C E-value 9.2e-124 gene gene4122 http://www.ncbi.nlm.nih.gov/gene/?term= YPCD1.79c YPCD1.79c 57466 57720 - putative replication transcriptional regulator YPCD1.79c%2C repB%2C repA2%2C copB%2C probable replication transcriptional regulator%2C len: 84 aa%3B identical to corresponding CDS from Y.pestis KIM5 pCD1 (EMBL:AF053946%2C AF074612) (84 aa)%2C fasta scores%3B opt: 529 z-score: 1067.5 E(): 0%2C 100.0%25 identity in 84 aa overlap. Highly similar to many e.g. CPB2_ECOLI (EMBL:M26840)%2C copB%2C E.coli transcriptional regulator from incFII plasmids (84 aa) (54.9%25 identity in 82 aa overlap) gene gene4158 http://www.ncbi.nlm.nih.gov/gene/?term= YPMT1.68c YPMT1.68c 68956 70161 - putative partitioning protein A YPMT1.68c%2C parA%2C probable partitioning protein A%2C len: 401 aa%3B similar to PARA_ECOLI (EMBL:K02380)%2C parA%2C Escherichia coli plasmid partition parA protein from plasmid P1 (398 aa)%2C fasta scores%3B opt: 1566 z-score: 1814.5 E(): 0%2C 57.4%25 identity in 394 aa overlap. Identical to parA (EMBL:AF074611) from Y.pestis KIM5 pMT1 (424 aa) (100.0%25 identity in 401 aa overlap) which has a different putative start codon / TR:O68787 (EMBL:AF053947) from Y.pestis KIM5 pMT1 (401 aa) (100.0%25 identity in 401 aa overlap). Contains Pfam match to entry PF00991 ParA%2C ParA family ATPase%2C score 30.80%2C E-value 3.3e-06 gene gene4255 http://www.ncbi.nlm.nih.gov/gene/?term= YPCD1.07 YPCD1.07 4261 4557 + hypothetical protein YPCD1.07 YPCD1.07%2C Y0076%2C hypothetical protein%2C len: 98 aa%3B unknown function%2C identical Y0076 (EMBL:AF074612) Y.pestis KIM5 hypothetical protein (98 aa)%2C fasta scores%3B opt: 628 z-score: 1289.8 E(): 0%2C 100.0%25 identity in 98 aa overlap gene gene4086 http://www.ncbi.nlm.nih.gov/gene/?term= YPMT1.17c YPMT1.17c 20701 21159 - hypothetical protein YPMT1.17c YPMT1.17c%2C hypothetical protein%2C len: 152 aa%3B unknown function%2C identical to ORF Y1038 (EMBL:AF074611) from Y.pestis KIM5 pMT1 (152 aa)%2C fasta scores%3B opt: 1011 z-score: 1336.1 E(): 0%2C 99.3%25 identity in 152 aa overlap / TR:O68734 (EMBL:AF053947) from Y.pestis KIM5 pMT1 (114 aa) (100.0%25 identity in 114 aa overlap) which has a different putative start codon gene gene4194 http://www.ncbi.nlm.nih.gov/gene/?term= YPMT1.62c YPMT1.62c 63188 63967 - hypothetical protein YPMT1.62c YPMT1.62c%2C conserved hypothetical protein%2C len: 259 aa%3B unknown function%2C similar to TR:O82899 (EMBL:AB011549) Escherichia coli hypothetical protein from plasmid pO157 (258 aa)%2C fasta scores%3B opt: 998 z-score: 1227.5 E(): 0%2C 59.3%25 identity in 258 aa overlap. Identical to ORF Y1088 (EMBL:AF074611) from Y.pestis KIM5 pMT1 (259 aa) (100.0%25 identity in 259 aa overlap) / TR:O68791 (EMBL:AF053947) from Y.pestis KIM5 pMT1 (259 aa) (100.0%25 identity in 259 aa overlap) gene gene4248 http://www.ncbi.nlm.nih.gov/gene/?term= YPMT1.48c YPMT1.48c 49621 49992 - hypothetical protein YPMT1.48c YPMT1.48c%2C hypothetical protein%2C len: 123 aa%3B unknown function%2C similar to TR:Q38665 (EMBL:X78401)%2C ninX%2C bacteriophage P22 protein (112 aa)%2C fasta scores%3B opt: 298 z-score: 392.8 E(): 1.4e-14%2C 45.6%25 identity in 114 aa overlap. Identical to ORF Y1115 (EMBL:AF074611) from Y.pestis KIM5 pMT1 (123 aa) (100.0%25 identity in 123 aa overlap) gene gene4232 http://www.ncbi.nlm.nih.gov/gene/?term= YPMT1.41c YPMT1.41c 42215 43300 - putative exonuclease subunit 1 YPMT1.41c%2C possible exonuclease subunit 1%2C len: 361 aa%3B similar to EXO1_BPT4 (EMBL:X01804) bacteriophage T4 exonuclease subunit 1 (339 aa)%2C fasta scores%3B opt: 201 z-score: 234.7 E(): 9.3e-06%2C 23.3%25 identity in 339 aa overlap. Identical to ORF Y1006 (EMBL:AF074611) from Y.pestis KIM5 pMT1 (361 aa) (100.0%25 identity in 361 aa overlap) / TR:O68757 (EMBL:AF053947) from Y.pestis KIM5 pMT1 (317 aa) (100.0%25 identity in 317 aa overlap) which has a different putative start codon gene gene4222 http://www.ncbi.nlm.nih.gov/gene/?term= YPCD1.84c YPCD1.84c 59443 59934 - hypothetical protein YPCD1.84c YPCD1.84c%2C Y0093%2C hypothetical protein%2C len: 163 aa%3B identical to corresponding CDS Y0093 from Y.pestis KIM5 pCD1 (EMBL:AF053946%2C AF074612)%2C fasta scores%3B opt: 1080 z-score: 2044.4 E(): 0%2C 99.4%25 identity in 163 aa overlap. Similar to a C-terminal region within TRI2_ECOLI (EMBL:X55815)%2C traI%2C E.coli DNA helicase I (1756 aa) (49.6%25 identity in 123 aa overlap) and to a region in the N-terminal half of putative DNA traI from E.coli plasmid pO157 (432 aa) (49.5%25 identity in 103 aa overlap) gene gene4163 http://www.ncbi.nlm.nih.gov/gene/?term= YPCD1.47 YPCD1.47 33953 35017 + putative type III secretion protein YPCD1.47%2C yscU%2C probable type III secretion protein%2C len: 354 aa%3B identical to corresponding CDS from Y.pestis KIM5 pCD1 (EMBL:AF053946%2C AF074612) (354 aa)%2C fasta scores%3B opt: 2254 z-score: 3428.9 E(): 0%2C 100.0%25 identity in 354 aa overlap and to YSCU_YERPS (EMBL:L25667)%2C yscU%2C from Yersinia pseudotuberculosis plasmid pIB1. Highly similar to TR:Q56844 (EMBL:U08019)%2C yscU%2C from Yersinia enterocolitica (354 aa) (98.9%25 identity in 354 aa overlap). Similar to other bacterial type III secretion components e.g. SSAU_SALTY (EMBL:X99944)%2C ssaU%2C Salmonella typhimurium secretion system protein (352 aa) (37.3%25 identity in 357 aa overlap). Contains Pfam match to entry PF01312 Bac_export_2%2C FlhB HrpN YscU SpaS Family%2C score 674.40%2C E-value 5.8e-199 gene gene4126 http://www.ncbi.nlm.nih.gov/gene/?term= YPMT1.51c YPMT1.51c 52616 53560 - putative exonuclease YPMT1.51c%2C possible exonuclease%2C len: 314 aa%3B similar to the N-terminal (5'-3' exonulcease) domain of many DNA polymerase I proteins e.g. DPO1_STRPN (EMBL:J04479)%2C polA%2C Streptococcus pneumoniae DNA polymerase I (877 aa)%2C fasta scores%3B opt: 334 z-score: 393.7 E(): 1.3e-14%2C 28.0%25 identity in 304 aa overlap. Identical to ORF Y1111 (EMBL:AF07461) from Y.pestis KIM5 pMT1 (331 aa) (99.7%25 identity in 331 aa overlap) / TR:O68765 (EMBL:AF053947) from Y.pestis KIM5 pMT1 (289 aa) (100.0%25 identity in 289 aa overlap) which has a different putative start codon. Contains Pfam match to entry PF01367 5_3_exonuclease%2C 5'-3' exonuclease%2C score -16.20%2C E-value 7.6e-11 gene gene4237 http://www.ncbi.nlm.nih.gov/gene/?term= 16S_rRNA 16S_rRNA 4221808 4223296 - match to 16S_rRNA 1..1489(EMBL:YPE16SA) rRNA gene3713 http://www.ncbi.nlm.nih.gov/gene/?term= 2946414 2946490 - tRNA-Met tRNA Met anticodon CAT%2C Cove score 94.35 tRNA rna57 http://www.ncbi.nlm.nih.gov/gene/?term= YPMT1.16c YPMT1.16c 20237 20710 - hypothetical protein YPMT1.16c YPMT1.16c%2C hypothetical protein%2C len: 157 aa%3B unknown function%2C identical to ORF Y1039 (EMBL:AF074611) from Y.pestis KIM5 pMT1 (157 aa)%2C fasta scores%3B opt: 1012 z-score: 1207.0 E(): 0%2C 100.0%25 identity in 157 aa overlap / TR:O68733 (EMBL:AF053947) from Y.pestis KIM5 pMT1 (126 aa) (100.0%25 identity in 126 aa overlap) which has a different putative start codon gene gene4193 http://www.ncbi.nlm.nih.gov/gene/?term= YPMT1.27c YPMT1.27c 30072 30770 - putative ABC transporter ATP-binding protein YPMT1.27c%2C possible ABC transporter ATP-binding protein%2C len: 232 aa%3B weakly similar to many putative ABC transporter proteins e.g. ABC_ECOLI (EMBL:AE000129) Escherichia coli putative ATP-binding protein (343 aa)%2C fasta scores%3B opt: 155 z-score: 178.2 E(): 0.013%2C 28.3%25 identity in 184 aa overlap. Identical to ORF Y1025 (EMBL:AF074611) from Y.pestis KIM5 pMT1 (232 aa) (99.6%25 identity in 232 aa overlap) / TR:O68745 (EMBL:AF053947) from Y.pestis KIM5 pMT1 (212 aa) (100.0%25 identity in 212 aa overlap) which has a different putative start codon. Contains Contains Pfam match to entry PF00005 ABC_tran%2C ABC transporter%2C score 7.60%2C E-value 6.1e-06 and PS00017 ATP/GTP-binding site motif A (P-loop) gene gene4206 http://www.ncbi.nlm.nih.gov/gene/?term= YPCD1.26c YPCD1.26c 16336 17565 - putative targeted effector protein YPCD1.26c%2C yopM%2C probable targeted effector protein%2C 409 aa%3B identical to corresponding CDS from Y.pestis KIM5 pCD1 (EMBL:AF053946%2C AF074612) (409 aa)%2C fasta scores%3B opt: 2673 z-score: 3547.3 E(): 0%2C 100.0%25 identity in 409 aa overlap. Highly similar to YOPM_YERPE (EMBL:M25810) from Y.pestis plasmid pCD1 (367 aa) (89.7%25 identity in 409 aa overlap) and TR:P74988 (EMBL:Z69926) from Yersinia enterocolitica (367 aa) (83.1%25 identity in 409 aa overlap). Shows weaker similarity to the N-terminal half of IPA4_SHIFL (EMBL:M76445)%2C ipaH%2C Shigella flexneri plasmid pWR100 antigen (574 aa) (37.0%25 identity in 273 aa overlap). Contains 7 Pfam matches to entry PF00560 LRR%2C Leucine Rich Repeat (2 copies) gene gene4105 http://www.ncbi.nlm.nih.gov/gene/?term= YPMT1.76 YPMT1.76 76996 77304 + hypothetical protein YPMT1.76 YPMT1.76%2C conserved hypothetical protein%2C len: 102 aa%3B unknown function%2C similar to TR:P71290 (EMBL:U70214) Escherichia coli chromosomal hypothetical protein (102 aa)%2C fasta scores%3B opt: 586 z-score: 814.4 E(): 0%2C 85.3%25 identity in 102 aa overlap Identical to ORFY1067 (EMBL:AF074611) from Y.pestis KIM5 pMT1 (102 aa) (100.0%25 identity in 102 aa overlap) gene gene4264 http://www.ncbi.nlm.nih.gov/gene/?term= YPCD1.44 YPCD1.44 32250 32903 + putative Yop secretion membrane protein YPCD1.44%2C yscR%2C probable type III secretion membrane protein%2C len: 217 aa%3B identical to corresponding CDS from Y.pestis KIM5 pCD1 (EMBL:AF053946%2C AF074612) (217 aa)%2C fasta scores%3B opt: 1375 z-score: 2288.5 E(): 0%2C 100.0%25 identity in 217 aa overlap and to YSCR_YERPS (EMBL:L25667)%2C yscR%2C from Yersinia pseudotuberculosis plasmid pIB1. Similar to virulence determinants involving host cell invasion from e.g. YSCR_SALTY (EMBL:X99944)%2C yscR%2C Salmonella typhimurium virulence protein (215 aa) (54.4%25 identity in 215 aa overlap) and also TR:P72275 (EMBL:L12251)%2C hcrR%2C Rhizobium fredii nodulation protein (249 aa) (45.5%25 identity in 220 aa overlap). Contains Pfam match to entry PF00813 FliP%2C FliP family%2C score 463.50%2C E-value 1.7e-135. Contains PS01060 Flagella transport protein fliP family signature 1 and PS01061 Flagella transport protein fliP family signature 2 gene gene4123 http://www.ncbi.nlm.nih.gov/gene/?term= 23S_rRNA 23S_rRNA 3649202 3652108 - match to 23S_rRNA 1..2906 (Y. enterocolitica 23S EMBL:U77925 ) rRNA gene3222 http://www.ncbi.nlm.nih.gov/gene/?term= YPMT1.49c YPMT1.49c 50146 50976 - putative lipoprotein YPMT1.49c%2C possible lipoprotein%2C len: 276 aa%3B unknown function%2C identical to ORF Y1114 (EMBL:AF074611) from Y.pestis KIM5 pMT1 (276 aa)%2C fasta scores%3B opt: 1784 z-score: 1941.7 E(): 0%2C 100.0%25 identity in 276 aa overlap / TR:O68763 (EMBL:AF053947) from Y.pestis KIM5 pMT1 (261 aa) (100.0%25 identity in 261 aa overlap) which has a different putative start codon. Contains probable coiled-coil from 190 to 236 (47 residues)(Max score: 1.666%2C probability 1.00). Contains probable N-terminal signal sequence and appropriately positioned PS00013 Prokaryotic membrane lipoprotein lipid attachment site%2C so may be a lipoprotein gene gene4233 http://www.ncbi.nlm.nih.gov/gene/?term= YPCD1.16c YPCD1.16c 9911 10234 - hypothetical protein YPCD1.16c YPCD1.16c%2C Y0068%2C hypothetical protein%2C len: 107 aa%3B unknown function%2C identical to corresponding CDS from Y.pestis KIM5 pCD1 (EMBL:AF053946%2C AF074612) (107 aa)%2C fasta scores%3B opt: 675 z-score: 1236.9 E(): 0%2C 99.1%25 identity in 107 aa overlap and identical to Y0094 from the same plasmid. Also similar to YI91_ECOLI (EMBL:U14003) hypothetical protein from E.coli insertion element IS911 (100 aa) (41.7%25 identity in 84 aa overlap) and to many other ORFs associated with insertion elements. Contains probable helix-turn-helix motif at aa 31-52 (Score 1833%2C +5.43 SD). Contains probable coiled-coil from 68 to 98 (31 residues%2C probability 1.00) gene gene4095 http://www.ncbi.nlm.nih.gov/gene/?term= YPMT1.05c YPMT1.05c 5901 6518 - hypothetical protein YPMT1.05c YPMT1.05c%2C hypothetical protein%2C len: 205 aa%3B unknown function%2C identical to TR:O68723 (EMBL:AF053947) hypothetical protein from Y.pestis KIM5 pMT1 (205 aa)%2C fasta scores%3B opt: 1385 z-score: 1656.3 E(): 0%2C 100.0%25 identity in 205 aa overlap and ORF Y1050 (EMBL:AF074611) from Y.pestis KIM5 pMT1 (210 aa) (100.0%25 identity in 205 aa overlap) which has a differing putative start codon gene gene4182 http://www.ncbi.nlm.nih.gov/gene/?term= 4178611 4178686 - tRNA-Ala tRNA Ala anticodon TGC%2C Cove score 93.97 tRNA rna83 http://www.ncbi.nlm.nih.gov/gene/?term= YPCD1.92 YPCD1.92 66503 66832 + hypothetical protein YPCD1.92 YPCD1.92%2C Y0085%2C hypothetical protein%2C len: 109 aa%3B unknown function%2C identical to corresponding CDS Y0085 from Y.pestis KIM5 pCD1 (EMBL:AF053946%2C AF074612) (109 aa)%2C fasta scores%3B opt: 695 z-score: 1257.6 E(): 0%2C 100.0%25 identity in 109 aa overlap. Contains probable coiled-coil from 16 to 47 (32 residues%2C probability 0.92) gene gene4171 http://www.ncbi.nlm.nih.gov/gene/?term= 4211491 4211566 - tRNA-Thr tRNA Thr anticodon TGT%2C Cove score 93.97 tRNA rna89 http://www.ncbi.nlm.nih.gov/gene/?term= YPCD1.61 YPCD1.61 43796 44461 + putative type III secretion protein YPCD1.61%2C yscL%2C probable type III secretion protein%2C len: 221 aa%3B identical to corresponding CDS from Y.pestis KIM5 pCD1 (EMBL:AF053946%2C AF074612) (221 aa)%2C fasta scores%3B opt: 1398 z-score: 2437.5 E(): 0%2C 100.0%25 identity in 221 aa overlap and to YSCL_YERPS (EMBL:M83986)%2C yscL%2C from Yersinia pseudotuberculosis plasmid pIB1. Highly similar to YSCL_YEREN (EMBL:M74011)%2C yscL%2C from Yersinia enterocolitica plasmid pYV (223 aa) (99.1%25 identity in 221 aa overlap). Similar to to several other bacterial type III secretion components e.g. TR:P95440 (EMBL:U56077)%2C pscL%2C Pseudomonas aeruginosa exoenzyme S secretion protein (221 aa) (56.6%25 identity in 205 aa overlap). There is more than one possible start codon%2C notably ATG (position 12) and TTG (position 32). Contains probable coiled-coil from 42 to 71 (30 residues%2C probability 0.86) gene gene4140 http://www.ncbi.nlm.nih.gov/gene/?term= YPCD1.66 YPCD1.66 46623 46901 + CAB54943.1 YPCD1.66%2C probable transposase remnant%2C len: 92 aa%3B highly similar to region of TR:O68779 (EMBL:AF053947)%2C putative transposase from from Y.pestis KIM5 pMT1 (402 aa). Contains Pfam match to entry PF00872 Transpo_mutator%2C Transposase%2C Mutator family%2C score 59.30%2C E-value 5.5e-16 gene gene4145 http://www.ncbi.nlm.nih.gov/gene/?term= YPCD1.68c YPCD1.68c 48811 49017 - CAB54945.1 YPCD1.68c%2C Y0012%2C hypothetical protein%2C len: 68 aa%3B identical to corresponding CDS from Y.pestis KIM5 pCD1 (EMBL:AF074612) (68 aa)%2C fasta scores%2C opt: 453 z-score: 678.5 E(): 2e-30 98.5%25 identity in 68 aa overlap. Similar to parts of hypothetical proteins e.g. Y4HP_RHISN (EMBL:X74068) Rhizobium sp. (strain NGR234) hypothetical protein (552 aa) (47.1%25 identity in 68 aa overlap) gene gene4147 http://www.ncbi.nlm.nih.gov/gene/?term= YPCD1.76c YPCD1.76c 55577 55744 - YPCD1.76c%2C possible pseudogene%2C len: 168 bp%3B similar to region of YPRR_ECOLI (EMBL:M26840)%2C repA4%2C E.coli hypothetical protein from IncFII plasmid NR1 pseudogene gene4155 http://www.ncbi.nlm.nih.gov/gene/?term= YPMT1.82 YPMT1.82 82567 83343 + putative F1 chaperone protein YPMT1.82%2C caf1M%2C probable F1 chaperone protein%2C len: 258 aa%3B highly similar toCAFM_YERPE (EMBL:X61996) Yersinia pestis chaperone protein caf1M precursor from plasmid pFRA (258 aa)%2C fasta scores%3B opt: 1725 z-score: 2033.0 E(): 0%2C 99.6%25 identity in 258 aa overlap. Similar to MYFB_YEREN (EMBL:Z21953)%2C myfB%2C Yersinia enterocolitica chaperone required for fimbrial biogenesis (267 aa) (37.9%25 identity in 253 aa overlap) and PSAB_YERPE (EMBL:X97759)%2C psaB%2C Yersina pseudotuberculosis chaperone required for fimbrial biogenesis (273 aa) (41.4%25 identity in 261 aa overlap). Identical to caf1M (EMBL:AF074611) from Y.pestis KIM5 pMT1 (269 aa) (100.0%25 identity in 258 aa overlap) which has a different putative start codon / TR:O68774 (EMBL:AF053947) from Y.pestis KIM5 pMT1 (258 aa) (100.0%25 identity in 258 aa overlap). Contains Pfam match to entry PF00345 pili_assembly%2C Gram-negative pili assembly chaperone%2C score 366.40%2C E-value 4.3e-107 and PS00635 Gram-negative pili assembly chaperone signature gene gene4271 http://www.ncbi.nlm.nih.gov/gene/?term= YPCD1.48 YPCD1.48 35593 35988 + putative Yop targeting lipoprotein YPCD1.48%2C virG%2C probable Yop targeting lipoprotein%2C len: 131 aa%3B identical to corresponding CDS from Y.pestis KIM5 pCD1 (EMBL:AF053946%2C AF074612) (131 aa)%2C fasta scores%3B opt: 861 z-score: 1683.7 E(): 0 99.2%25 identity in 131 aa overlap and to TR:Q56851 (EMBL:U21297)%2C virG%2C from Yersinia enterocolitica plasmid pYVE227 (131 aa). Weak similarity to EXSB_PSEAE (EMBL:M64975)%2C exsB%2C Pseudomonas aeruginosa exoenzyme S synthesis protein regulatory B (137 aa) (29.0%25 identity in 124 aa overlap). Contains appropriately positioned PS00013 Prokaryotic membrane lipoprotein lipid attachment site gene gene4127 http://www.ncbi.nlm.nih.gov/gene/?term= YPCD1.65 YPCD1.65 46302 46610 + putative transposase YPCD1.65%2C ORFC%2C possible transposase%2C len: 102 aa%3B identical to corresponding region within putative transposase Y0014 from Y.pestis KIM5 pCD1 (EMBL:AF074612) (123 aa). Similar to C-terminus of TR:O54332 (EMBL:U45993) Xanthomonas campestris insertion sequence IS1403 ORFB (271 aa) (35.3%25 identity in 150 aa overlap) gene gene4144 http://www.ncbi.nlm.nih.gov/gene/?term= YPMT1.79c YPMT1.79c 78286 79308 - putative transposase YPMT1.79c%2C probable transposase%2C len: 354 aa%3B similar to many e.g. TRA8_YEREN (EMBL:Z48244) Yersinia enterocolitica transposase for insertion sequence element IS1328 (334 aa)%2C fasta scores%3B opt: 778 z-score: 897.6 E(): 0%2C 36.3%25 identity in 333 aa overlap. Identical to ORF Y1063 (EMBL:AF074611) from Y.pestis KIM5 pMT1 (354 aa) (100.0%25 identity in 340 aa overlap) which has a different putative start codon / TR:O68780 (EMBL:AF053947) from Y.pestis KIM5 pMT1 (340 aa) (100.0%25 identity in 340 aa overlap). Contains probable helix-turn-helix motif at aa 240-261 (Score 1094%2C +2.91 SD) gene gene4268 http://www.ncbi.nlm.nih.gov/gene/?term= YPMT1.34 YPMT1.34 35314 35964 + hypothetical protein YPMT1.34 YPMT1.34%2C hypothetical protein%2C len: 216 aa%3B unknown function%2C identical to ORF Y1018 (EMBL:AF074611) from Y.pestis KIM5 pMT1 (216 aa)%2C fasta scores%3B opt: 1348 z-score: 1590.1 E(): 0%2C 100.0%25 identity in 216 aa overlap / TR:O68752 (EMBL:AF053947) from Y.pestis KIM5 pMT1 (216 aa) (100.0%25 identity in 216 aa overlap) gene gene4213 http://www.ncbi.nlm.nih.gov/gene/?term= 3652454 3652530 - tRNA-Ile tRNA Ile anticodon GAT%2C Cove score 94.77 tRNA rna70 http://www.ncbi.nlm.nih.gov/gene/?term= YPCD1.05c YPCD1.05c 3014 3406 - putative yopE chaperone YPCD1.05c%2C sycE%2C yerA%2C yopE targeting protein%2C len: 130 aa%3B identical to corresponding CDS from Y.pestis KIM5 pCD1 (EMBL:AF053946%2C AF074612) (130 aa)%2C fasta scores%3B opt: 861 z-score: 1608.5 E(): 0%2C 100.0%25 identity in 130 aa overlap and to YERA_YERPE (EMBL:M34279) from Y.pestis plasmid pYV019. Highly similar to TR:Q56910 (EMBL:Z18539)%2C sycE%2C from Yersinia enterocolitica (130 aa) (99.2%25 identity in 130 aa overlap) and YERA_YEREN (EMBL:M34278)%2C yerE%2C also from Y.enterocolitica (130 aa) (98.5%25 identity in 130 aa overlap). Similar to TR:Q51448 (EMBL:L27629)%2C ORF1%2C Pseudomonas aeruginosa exoenzyme S ORF1 (116 aa) (44.3%25 identity in 115 aa overlap) gene gene4084 http://www.ncbi.nlm.nih.gov/gene/?term= 2171287 2171362 - tRNA-Asn tRNA Asn anticodon GTT%2C Cove score 87.13 tRNA rna47 http://www.ncbi.nlm.nih.gov/gene/?term= 2946218 2946292 - tRNA-Gln tRNA Gln anticodon TTG%2C Cove score 75.01 tRNA rna55 http://www.ncbi.nlm.nih.gov/gene/?term= 2688776 2688852 + tRNA-Val tRNA Val anticodon GAC%2C Cove score 96.37 tRNA rna51 http://www.ncbi.nlm.nih.gov/gene/?term= YPCD1.81 YPCD1.81 58307 58540 + CAB54958.1 YPCD1.81%2C possible transposase remnant%2C len: 78 aa%3B similar to parts of transposases e.g. (EMBL:AJ132945) Yersinia enterocolitica IS1329 transposase B (249 aa) (46.8%25 identity in 77 aa overlap) gene gene4160 http://www.ncbi.nlm.nih.gov/gene/?term= 1230109 1230185 + tRNA-Asp tRNA Asp anticodon GTC%2C Cove score 94.51 tRNA rna25 http://www.ncbi.nlm.nih.gov/gene/?term= YPMT1.11c YPMT1.11c 13719 18296 - putative membrane protein YPMT1.11c%2C possible membrane protein%2C len: 1525 aa%3B unknown function%2C contains region similar to YF14_HAEIN (EMBL:U32827) Haemophilus influenzae hypothetical protein (631 aa)%2C fasta scores%3B opt: 304 z-score: 280.2 E(): 2.7e-08%2C 26.3%25 identity in 392 aa overlap. Weak similarity to the N-terminal binding domain of TR:O85472 (EMBL:AF067776)%2C emb%2C Abiotrophia defectiva extracellular matrix binding protein (fragment) (2055 aa) (20.6%25 identity in 1489 aa overlap). Identical to ORF Y1044 (EMBL:AF074611) from Y.pestis KIM5 pMT1 (1525 aa) (100.0%25 identity in 1525 aa overlap) / TR:O68729 (EMBL:AF053947) from Y.pestis KIM5 pMT1 (1525 aa) (100.0%25 identity in 1525 aa overlap). Contains probable coiled-coils from 97 to 130 (34 residues) (Max score: 1.466%2C probability 0.90)%2C from 646 to 680 (35 residues) (Max score: 1.566%2C probability 0.99)%2C from 794 to 861 (68 residues) (Max score: 1.597%2C probability 0.99) and from 1044 to 1072 (29 residues) (Max score: 1.480%2C probability 0.93). Contains hydrophobic%2C possible membrane-spanning region gene gene4188 http://www.ncbi.nlm.nih.gov/gene/?term= YPPCP1.05c YPPCP1.05c 4815 5888 - pesticin YPPCP1.05c%2C pst%2C pesticin%2C len: 357 aa%3B identical to TR:Q57159 (EMBL:X92856) gene gene4284 http://www.ncbi.nlm.nih.gov/gene/?term= YPCD1.88c YPCD1.88c 61632 61868 - putative yadA invasin pseudogene N-terminus YPCD1.88c%2C yadA'%2C probable yadA invasin pseudogene N-terminus%2C len: 237 bp%3B highly similar to the N-terminus of YADA_YERPS (EMBL:X13883)%2C yadA%2C from Yersinia pseudotuberculosis plasmid pIB1 until the frameshift pseudogene gene4167 http://www.ncbi.nlm.nih.gov/gene/?term= YPMT1.44 YPMT1.44 46487 47551 + putative replication protein A YPMT1.44%2C repA%2C probable replication protein A%2C len: 354 aa%3B similar to many e.g. RP12_SALTI (EMBL:L01253) Salmonella typhi REPFIB replication protein A (325 aa)%2C fasta scores%3B opt: 1262 z-score: 1419.3 E(): 0%2C 63.9%25 identity in 299 aa overlap. Identical to repA (EMBL:AF074611) from Y.pestis KIM5 pMT1 (354 aa) (100.0%25 identity in 354 aa overlap) / TR:O68759 (EMBL:AF053947) from Y.pestis KIM5 pMT1 (354 aa) (100.0%25 identity in 354 aa overlap) gene gene4226 http://www.ncbi.nlm.nih.gov/gene/?term= YPMT1.88 YPMT1.88 91754 92989 + putative porphyrin biosynthetic protein YPMT1.88%2C possible porphyrin biosynthetic protein%2C len: 411 aa%3B weakly similar to COBS_PSEDE (EMBL:M62869)%2C cobS%2C Pseudomonas denitrificans cobalamin biosynthesis protein (332 aa)%2C fasta scores%3B opt: 384 z-score: 453.4 E(): 6e-18 28.6%25 identity in 308 aa overlap. Identical to cobS (EMBL:AF074611) from Y.pestis KIM5 pMT1 (411 aa) (100.0%25 identity in 411 aa overlap) / TR:O68771 (EMBL:AF053947) from Y.pestis KIM5 pMT1 (411 aa) (100.0%25 identity in 411 aa overlap). Contains PS00017 ATP/GTP-binding site motif A (P-loop) gene gene4278 http://www.ncbi.nlm.nih.gov/gene/?term= 5S_rRNA 5S_rRNA 4175006 4175140 - partial 5SrRNA lacking the first 100 bases. rRNA gene3674 http://www.ncbi.nlm.nih.gov/gene/?term= 3151676 3151752 - tRNA-Arg tRNA Arg anticodon TCT%2C Cove score 94.70 tRNA rna59 http://www.ncbi.nlm.nih.gov/gene/?term= YPCD1.29c YPCD1.29c 20233 21438 - putative Yop targeting protein YPCD1.29c%2C yopB%2C probable Yop targeting protein%2C len: 401 aa%3B identical to to corresponding CDS from Y.pestis KIM5 pCD1 (EMBL:AF053946%2C AF074612) (401 aa)%2C fasta scores%3B opt: 2457 z-score: 3381.9 E(): 0%2C 100.0%25 identity in 401 aa overlap. Highly similar to YOPB_YERPS (EMBL:L06215)%2C yopB%2C from Yersinia pseudotuberculosis plasmid pIB1 (401 aa) (99.8%25 identity in 401 aa overlap) and YOPB_YEREN (EMBL:L06216)%2C yopB%2C from Yersinia enterocolitica plasmid pYVE227 (401 aa) (95.5%25 identity in 401 aa overlap). Similar to TR:O50279 (EMBL:AF035922)%2C pepB%2C Pseudomonas aeruginosa type III secretion system component (390 aa) (40.7%25 identity in 388 aa overlap). Contains probable coiled-coils from 104 to 162 (59 residues%2C probability 0.96) and from 342 to 380 (39 residues%2C probability 0.96) gene gene4108 http://www.ncbi.nlm.nih.gov/gene/?term= YPCD1.04 YPCD1.04 2304 2951 + CAB54881.1 YPCD1.04%2C possible transposase remnant%2C len: 215 aa%3B similar to many e.g. TR:Q46612 (EMBL:X78052) Enterobacter agglomerans IS 1222 ORFB (276 aa). Truncated at N-terminus gene gene4083 http://www.ncbi.nlm.nih.gov/gene/?term= YPMT1.18c YPMT1.18c 21143 21976 - hypothetical protein YPMT1.18c YPMT1.18c%2C hypothetical protein%2C len: 277 aa%3B unknown function%2C identical to ORF Y1037 (EMBL:AF074611) from Y.pestis KIM5 pMT1 (277 aa)%2C fasta scores%3B opt: 1786 z-score: 2141.5 E(): 0%2C 100.0%25 identity in 277 aa overlap gene gene4195 http://www.ncbi.nlm.nih.gov/gene/?term= YPMT1.40Ac YPMT1.40Ac 41994 42218 - hypothetical protein YPMT1.40Ac YPMT1.40Ac%2C hypothetical protein%2C len: 74 aa%3B unknown function%2C identical to part of ORF Y1007 (EMBL:AF074611) from Y.pestis KIM5 pMT1 (88 aa)%2C fasta scores%3B opt: 503 z-score: 705.0 E(): 6.9e-32%2C 100.0%25 identity in 74 aa overlap gene gene4221 http://www.ncbi.nlm.nih.gov/gene/?term= YPMT1.22c YPMT1.22c 24093 24926 - hypothetical protein YPMT1.22c YPMT1.22c%2C hypothetical protein%2C len: 277 aa%3B unknown function%2C a frameshift fusion of ORFs Y1032 and Y1033 (EMBL:AF074611) from Y.pestis KIM5 pMT1 (151 aa%2C 123 aa) / TR:O68739 and TR:O68738 (EMBL:AF053947) from Y.pestis KIM5 pMT1 (146 aa%2C 105 aa) which have different putative start codons. Contains probable coiled-coil from 107 to 147 (41 residues) (Max score: 1.626%2C probability 1.00) gene gene4199 http://www.ncbi.nlm.nih.gov/gene/?term= YPCD1.45 YPCD1.45 32905 33171 + putative type III secretion protein YPCD1.45%2C yscS%2C probable type III secretion protein%2C len: 88 aa%3B identical to corresponding CDS from Y.pestis KIM5 pCD1 (EMBL:AF053946%2C AF074612) (88 aa)%2C fasta scores%3B opt: 543 z-score: 1050.0 E(): 0%2C 100.0%25 identity in 88 aa overlap. YSCS_YERPE (EMBL:AF020214)%2C an alternative sequence from KIM5 (79 aa) has differences at the C-terminus (97.4%25 identity in 78 aa overlap). Similar to other bacterial type III secretion components e.g. TR:Q46647 (EMBL:L25828)%2C hrcS%2C Erwinia amylovora putative harpin secretion protein (86 aa) (47.6%25 identity in 84 aa overlap) and SSAS_SALTY (EMBL:X99944)%2C ssaS%2C Salmonella typhimurium virulence protein (88 aa) (51.2%25 identity in 84 aa overlap). Contains Pfam match to entry PF01313 Bac_export_3%2C Bacterial export proteins%2C family 3%2C score 152.20%2C E-value 9.1e-42 gene gene4124 http://www.ncbi.nlm.nih.gov/gene/?term= 3682739 3682815 - tRNA-Arg tRNA Arg anticodon ACG%2C Cove score 85.08 tRNA rna73 http://www.ncbi.nlm.nih.gov/gene/?term= 13944 14019 + tRNA-Glu tRNA Glu anticodon TTC%2C Cove score 56.95 tRNA rna1 http://www.ncbi.nlm.nih.gov/gene/?term= 4221475 4221550 - tRNA-Ala tRNA Ala anticodon TGC%2C Cove score 93.97 tRNA rna92 http://www.ncbi.nlm.nih.gov/gene/?term= YPMT1.25c YPMT1.25c 27816 28457 - hypothetical protein YPMT1.25c YPMT1.25c%2C hypothetical protein%2C len: 213 aa%3B unknown function%2C identical to ORF Y1029 (EMBL:AF074611) from Y.pestis KIM5 pMT1 (213 aa)%2C fasta scores%3B opt: 1361 z-score: 1495.2 E(): 0%2C 100.0%25 identity in 213 aa overlap / TR:O68742 (EMBL:AF053947) from Y.pestis KIM5 pMT1 (213 aa) (100.0%25 identity in 213 aa overlap). Contains probable helix-turn-helix motif at aa 30-51 (Score 1936%2C +5.78 SD) gene gene4202 http://www.ncbi.nlm.nih.gov/gene/?term= 23S_rRNA 23S_rRNA 4175486 4178392 - match to 23S_rRNA 1..2906 (Y. enterocolitica 23S EMBL:U77925) rRNA gene3676 http://www.ncbi.nlm.nih.gov/gene/?term= YPMT1.47c YPMT1.47c 49227 49637 - hypothetical protein YPMT1.47c YPMT1.47c%2C hypothetical protein%2C len: 136 aa%3B unknown function%2C identical to ORF Y1116 (EMBL:AF074611) from Y.pestis KIM5 pMT1 (136 aa)%2C fasta scores%3B opt: 935 z-score: 1186.7 E(): 0%2C 99.3%25 identity in 136 aa overlap / TR:O68762 (EMBL:AF053947) from Y.pestis KIM5 pMT1 (98 aa) (100.0%25 identity in 98 aa overlap) which has a different putative start codon gene gene4231 http://www.ncbi.nlm.nih.gov/gene/?term= 3843474 3843558 - tRNA-Leu tRNA Leu anticodon CAA%2C Cove score 74.86 tRNA rna75 http://www.ncbi.nlm.nih.gov/gene/?term= YPMT1.52c YPMT1.52c 53621 54649 - hypothetical protein YPMT1.52c YPMT1.52c%2C hypothetical protein%2C len: 342 aa%3B unknown function%2C identical to ORF Y1110 (EMBL:AF074611) from Y.pestis KIM5 pMT1 (359 aa)%2C fasta scores%3B opt: 2214 z-score: 2315.7 E(): 0%2C 100.0%25 identity in 342 aa overlap which has a different putative start codon / TR:O68766 (EMBL:AF053947) from Y.pestis KIM5 pMT1 (342 aa) (100.0%25 identity in 342 aa overlap) gene gene4238 http://www.ncbi.nlm.nih.gov/gene/?term= 16S_rRNA 16S_rRNA 4178944 4180432 - match to 16S_rRNA 1..1489 (EMBL:YPE16SA) rRNA gene3677 http://www.ncbi.nlm.nih.gov/gene/?term= YPMT1.69 YPMT1.69 70690 71016 + hypothetical protein YPMT1.69 YPMT1.69%2C hypothetical protein%2C len: 108 aa%3B unknown function%2C identical to ORF Y1074 (EMBL:AF074611) from Y.pestis KIM5 pMT1 (108 aa)%2C fasta scores%3B opt: 722 z-score: 914.3 E(): 0%2C 100.0%25 identity in 108 aa overlap gene gene4257 http://www.ncbi.nlm.nih.gov/gene/?term= YPCD1.31c YPCD1.31c 21935 22915 - putative V antigen%2C antihost protein/regulator YPCD1.31c%2C lcrV%2C probable V antigen%2C antihost protein/regulator%2C len: 326 aa%3B identical to to corresponding CDS from Y.pestis KIM5 pCD1 (EMBL:AF053946%2C AF074612) (326 aa)%2C fasta scores%3B opt: 2073 z-score: 3429.9 E(): 0%2C 100.0%25 identity in 326 aa overlap. Highly similar to LCRV_YERPS (EMBL:M57893)%2C lcrV%2C from Yersinia pseudotuberculosis plasmid pIB1 (326 aa) (96.9%25 identity in 326 aa overlap) and TR:O87495 (EMBL:AF080155)%2C lcrV%2C from Yersinia enterocolitica plasmid pYV (324 aa) (95.7%25 identity in 323 aa overlap). Contains differences to some sequences from Yersinia enterocolitica%2C notably a 9 aa deletion relative to TR:Q56853 (EMBL:X96796) and TR:Q56896 (EMBL:X96797). Also similar to TR:O30527 (EMBL:AF010149)%2C pcrV%2C Pseudomonas aeruginosa type III secretion system component (294 aa) (39.7%25 identity in 295 aa overlap) gene gene4110 http://www.ncbi.nlm.nih.gov/gene/?term= YPMT1.38c YPMT1.38c 38751 39320 - hypothetical protein YPMT1.38c YPMT1.38c%2C hypothetical protein%2C len: 189 aa%3B unknown function%2C identical to ORF Y1010 (EMBL:AF074611) from Y.pestis KIM5 pMT1 (189 aa)%2C fasta scores%3B opt: 1233 z-score: 1525.4 E(): 0%2C 100.0%25 identity in 189 aa overlap and highly similar to TR:O68755 (EMBL:AF053947) hypothetical protein from Y.pestis KIM5 pMT1 (195 aa) (97.3%25 identity in 187 aa overlap) gene gene4218 http://www.ncbi.nlm.nih.gov/gene/?term= 23S_rRNA 23S_rRNA 4384847 4387753 - match to 23S_rRNA 1..2906 (Y. enterocolitica 23S EMBL:U77925 ) rRNA gene3861 http://www.ncbi.nlm.nih.gov/gene/?term= micF micF 1381758 1381842 - gene gene1220 http://www.ncbi.nlm.nih.gov/gene/?term= YPMT1.31 YPMT1.31 33700 33978 + hypothetical protein YPMT1.31 YPMT1.31%2C hypothetical protein%2C len: 92 aa%3B unknown function%2C identical to ORF Y1021 (EMBL:AF074611) from Y.pestis KIM5 pMT1 (92 aa)%2C fasta scores%3B opt: 563 z-score: 717.8 E(): 1.1e-32%2C 100.0%25 identity in 92 aa overlap / TR:O68749 (EMBL:AF053947) from Y.pestis KIM5 pMT1 (92 aa) (100.0%25 identity in 92 aa overlap) gene gene4210 http://www.ncbi.nlm.nih.gov/gene/?term= YPMT1.30 YPMT1.30 32138 33697 + hypothetical protein YPMT1.30 YPMT1.30%2C hypothetical protein%2C len: 519 aa%3B possibly involved in DNA repair%2C weak similarity to excinucleases and helicases e.g. UVSW_BPT4 (EMBL:X56097) bacteriophage T4 regulatory protein (587 aa)%2C fasta scores%3B opt: 181 z-score: 212.2 E(): 0.00017%2C 22.0%25 identity in 478 aa overlap. Similar to TR:O57949 (EMBL:AP000001) Pyrococcus horikoshii hypothetical protein (444 aa)%2C fasta scores%3B opt: 297 z-score: 349.9 E(): 3.5e-12%2C 27.8%25 identity in 500 aa overlap. Identical to ORF Y1022 (EMBL:AF074611) from Y.pestis KIM5 pMT1 (519 aa) (100.0%25 identity in 519 aa overlap) / TR:O68748 (EMBL:AF053947) from Y.pestis KIM5 pMT1 (492 aa) (100.0%25 identity in 492 aa overlap) which has a different putative start codon. Contains Pfam match to entry PF00271 helicase_C%2C Helicases conserved C-terminal domain%2C score 35.80%2C E-value 9.8e-07 gene gene4209 http://www.ncbi.nlm.nih.gov/gene/?term= 4384420 4384496 - tRNA-Asp tRNA Asp anticodon GTC%2C Cove score 90.47 tRNA rna100 http://www.ncbi.nlm.nih.gov/gene/?term= YPMT1.33 YPMT1.33 34465 34992 + putative transcriptional regulator YPMT1.33%2C possible transcriptional regulator%2C len: 175 aa%3B similar to repressors for phase-1 flagellin gene e.g. FLJA_SALAE (EMBL:D13690)%2C fljA%2C Salmonella abortus-equi repressor for phase-1 flagellin gene (179 aa)%2C fasta scores%3B opt: 326 z-score: 417.2 E(): 6.3e-16%2C 32.9%25 identity in 170 aa overlap. Identical to ORF Y1019 (EMBL:AF074611) from Y.pestis KIM5 pMT1 (187 aa) (100.0%25 identity in 175 aa overlap) which has a different putative start codon / TR:O68751 (EMBL:AF053947) from Y.pestis KIM5 pMT1 (175 aa) (100.0%25 identity in 175 aa overlap) gene gene4212 http://www.ncbi.nlm.nih.gov/gene/?term= YPCD1.09c YPCD1.09c 4691 4966 - hypothetical protein YPCD1.09c YPCD1.09c%2C Y0074%2C hypothetical protein%2C len: 91 aa%3B unknown function%2C identical to Y0074 (EMBL:AF074612) Y.pestis KIM5 hypothetical protein (91 aa)%2C fasta scores%3B opt: 580 z-score: 768.8 E(): 0%2C 98.9%25 identity in 91 aa overlap. Also similar to TR:O85269 (EMBL:AF056093) Yersinia enterocolitica plasmid pYV hypothetical protein (80 aa) (97.5%25 identity in 80 aa overlap) and TR:P95254 (EMBL:Z84498) Rv1960c (MTCY09F9.04) M.tuberculosis hypothetical protein (83 aa) (43.9%25 identity in 57 aa overlap) gene gene4088 http://www.ncbi.nlm.nih.gov/gene/?term= 2307334 2307423 - tRNA-Ser tRNA Ser anticodon GGA%2C Cove score 62.70 tRNA rna49 http://www.ncbi.nlm.nih.gov/gene/?term= 1416574 1416650 - tRNA-Pro tRNA Pro anticodon GGG%2C Cove score 79.79 tRNA rna34 http://www.ncbi.nlm.nih.gov/gene/?term= 1164810 1164886 - tRNA-Met tRNA Met anticodon CAT%2C Cove score 86.07 tRNA rna17 http://www.ncbi.nlm.nih.gov/gene/?term= 698940 699016 - tRNA-Met tRNA Met anticodon CAT%2C Cove score 93.29 tRNA rna11 http://www.ncbi.nlm.nih.gov/gene/?term= YPMT1.81c YPMT1.81c 81334 82257 - putative F1 operon positive regulatory protein YPMT1.81c%2C caf1R%2C probable F1 operon positive regulatory protein%2C len: 307 aa%3B highly similar to CAFR_YERPE (EMBL:X61996)%2C caf1r%2C F1 operon positive regulatory protein from Yersinia pestis plasmid pFRA (301 aa)%2C fasta scores%3B opt: 2016 z-score: 2508.4 E(): 0%2C 99.3%25 identity in 301 aa overlap. Identical to caf1R (EMBL:AF074611) from Y.pestis KIM5 pMT1 (307 aa) (99.7%25 identity in 307 aa overlap) / caf1R (EMBL:AF053947) from Y.pestis KIM5 pMT1 (301 aa) (100.0%25 identity in 301 aa overlap) which has a different putative start codon. Contains Pfam match to entry PF00165 HTH_2%2C Bacterial regulatory helix-turn-helix proteins%2C araC family%2C score 116.30%2C E-value 5.9e-31 and PS00041 Bacterial regulatory proteins%2C araC family signature gene gene4270 http://www.ncbi.nlm.nih.gov/gene/?term= YPMT1.34A YPMT1.34A 36049 36276 + hypothetical protein YPMT1.34A YPMT1.34A%2C hypothetical protein%2C len: 75 aa%3B unknown function%2C identical to ORF Y1017 (EMBL:AF074611) from Y.pestis KIM5 pMT1 (75 aa)%2C fasta scores%3B opt: 469 z-score: 680.6 E(): 1.6e-30%2C 100.0%25 identity in 75 aa overlap gene gene4214 http://www.ncbi.nlm.nih.gov/gene/?term= YPMT1.32 YPMT1.32 34038 34460 + putative lipoprotein YPMT1.32%2C possible lipoprotein%2C len: 140 aa%3B unknown function%2C identical to ORF Y1020 (EMBL:AF074611) from Y.pestis KIM5 pMT1 (140 aa)%2C fasta scores%3B opt: 899 z-score: 1113.6 E(): 0%2C 100.0%25 identity in 140 aa overlap / TR:O68750 (EMBL:AF053947) from Y.pestis KIM5 pMT1 (85 aa) (100.0%25 identity in 85 aa overlap) which has a different putative start codon. Contains possible N-terminal signal sequence and appropriately positioned PS00013 Prokaryotic membrane lipoprotein lipid attachment site%2C so may be a lipoprotein gene gene4211 http://www.ncbi.nlm.nih.gov/gene/?term= YPCD1.06 YPCD1.06 3600 4259 + putative outer membrane virulence protein YPCD1.06%2C yopE%2C outer membrane virulence protein%2C len: 219 aa%3B identical to corresponding CDS from Y.pestis KIM5 pCD1 (EMBL:AF053946%2C AF074612) (219 aa)%2C fasta scores%3B opt: 1409 z-score: 2140.1 E(): 0%2C 100.0%25 identity in 219 aa overlap and to YOPE_YERPE (EMBL:M34279)%2C yopE%2C from Y.pestis plasmid pYV019. Highly similar to YOPE_YERPS (EMBL:Y00543)%2C yopE%2C from Yersinia pseudotuberculosis plasmid pIB1 (219 aa) (99.1%25 identity in 219 aa overlap) and to YOPE_YEREN (EMBL:M92066)%2C yopE%2C from Yersinia enterocolitica plasmid pYV (219 aa) (95.9%25 identity in 219 aa overlap) and TR:Q56931 (EMBL:M34278)%2C yopE%2C also from Y.enterocolitica (219 aa) (94.1%25 identity in 219 aa overlap) gene gene4085 http://www.ncbi.nlm.nih.gov/gene/?term= YPMT1.84 YPMT1.84 85950 86462 + putative F1 capsule antigen YPMT1.84%2C caf1%2C probable F1 capsule antigen%2C len: 170 aa%3B identical to CAF1_YERPE (EMBL:X61996) Yersinia pestis F1 capsule antigen from plasmid pFRA (170 aa)%2C fasta scores%3B opt: 1050 z-score: 1191.5 E(): 0%2C 100.0%25 identity in 170 aa overlap. Identical to caf1 (EMBL:AF074611) from Y.pestis KIM5 pMT1 (170 aa) (100.0%25 identity in 170 aa overlap) / caf1 (EMBL:AF053947) from Y.pestis KIM5 pMT1 (170 aa) (100.0%25 identity in 170 aa overlap) gene gene4273 http://www.ncbi.nlm.nih.gov/gene/?term= YPCD1.27 YPCD1.27 18229 18883 + putative transposase pseudogene YPCD1.27%2C probable transposase pseudogene%2C len: 655 bp%3B similar to many e.g. to TR:O87921 (EMBL:Y18002) Yersinia intermedia putative transposase from IS1635.1 (245 aa) pseudogene gene4106 http://www.ncbi.nlm.nih.gov/gene/?term= 5S_rRNA 5S_rRNA 1222391 1222624 + match to 5SrRNA 1..234 blast score 1131 percent identity 98 (incl. 23S-5S spacer) rRNA gene1075 http://www.ncbi.nlm.nih.gov/gene/?term= YPCD1.18c YPCD1.18c 11260 11403 - CAB54895.1 YPCD1.18c%2C possible transposase remnant%2C len: 48 aa%3B highly similar to a region of ORFB from several insertion element transposases e.g. TR:O31218 (EMBL:AF034211) Desulfovibrio vulgaris transposase ORFB from insertion element ISD1 (310 aa) gene gene4097 http://www.ncbi.nlm.nih.gov/gene/?term= YPMT1.3Ac YPMT1.3Ac 2723 2935 - hypothetical protein YPMT1.3Ac YPMT1.3Ac%2C hypothetical protein%2C len: 70 aa%3B unknown function%2C identical to ORF Y1052 (EMBL:AF074611) from Y.pestis KIM5 pMT1 (70 aa)%2C (100.0%25 identity in 70 aa overlap) gene gene4180 http://www.ncbi.nlm.nih.gov/gene/?term= 2115159 2115232 + tRNA-Cys tRNA Cys anticodon GCA%2C Cove score 58.23 tRNA rna44 http://www.ncbi.nlm.nih.gov/gene/?term= 379434 379509 + tRNA-Gly tRNA Gly anticodon GCC%2C Cove score 93.74 tRNA rna8 http://www.ncbi.nlm.nih.gov/gene/?term= 4325399 4325485 - tRNA-Leu tRNA Leu anticodon CAG%2C Cove score 67.09 tRNA rna96 http://www.ncbi.nlm.nih.gov/gene/?term= YPCD1.38c YPCD1.38c 26848 27126 - putative Yop secretion and targeting protein YPCD1.38c%2C tyeA%2C probable Yop secretion and targeting protein%2C len: 92 aa%3B identical to corresponding CDS from Y.pestis KIM5 pCD1 (EMBL:AF053946%2C AF074612) (92 aa)%2C fasta scores%3B opt: 610 z-score: 1227.2 E(): 0%2C 100.0%25 identity in 92 aa overlap and to tyeA (EMBL:AF033863) from Yersinia enterocolitica plasmid pYV. Similar to TR:O30532 (EMBL:AF010150)%2C pcr1%2C Pseudomonas aeruginosa type III secretion system component (92 aa) (47.1%25 identity in 87 aa overlap) gene gene4117 http://www.ncbi.nlm.nih.gov/gene/?term= YPCD1.95c YPCD1.95c 68179 68604 - putative yopH targeting protein YPCD1.95c%2C sycH%2C probable yopH targeting protein%2C len: 141 aa%3B identical to corresponding CDS Y0085 from Y.pestis KIM5 pCD1 (EMBL:AF053946%2C AF074612) (141 aa)%2C fasta scores%3B opt: 912 z-score: 1868.1 E(): 0%2C 100.0%25 identity in 141 aa overlap and to TR:Q56934 (EMBL:U18727)%2C sycH%2C from Yersinia pseudotuberculosis plasmid pIB1. Highly similar to TR:Q56845 (EMBL:U08222)%2C sycH%2C from Yersinia enterocolitica (141 aa) (97.9%25 identity in 141 aa overlap) gene gene4174 http://www.ncbi.nlm.nih.gov/gene/?term= YPCD1.86c YPCD1.86c 60307 60495 - putative pseudogene YPCD1.86c%2C possible pseudogene%2C len: 189 bp%3B highly similar to the N-termini of TR:O85268 (EMBL:AF056092) hypothetical protein from Yersinia enterocolitica plasmid pYV (291 aa)%2C TR:O30646 (EMBL:AF013775)%2C pagO%2C hypothetical membrane protein from Salmonella typhimurium chromosome (304 aa) and YTR1_BUCAP (EMBL:Z19055) Buchnera aphidicola hypothetical protein near the trp operon (300 aa) pseudogene gene4165 http://www.ncbi.nlm.nih.gov/gene/?term= YPPCP1.07 YPPCP1.07 6665 7603 + coagulase/fibrinolysin precursor YPPCP1.07%2C pla%2C coagulase/fibrinolysin precursor (EC 3.4.21.-) (plasminogen activator)%2C len: 312 aa%3B identical to COLY_YERPE. Contains PS00834 and PS00835 Serine proteases%2C omptin family signatures 1 and 2 gene gene4286 http://www.ncbi.nlm.nih.gov/gene/?term= YPCD1.28c YPCD1.28c 19294 20214 - putative Yop negative regulation/targeting component YPCD1.28c%2C yopD%2C probable Yop negative regulation/targeting component%2C len: 306 aa%3B identical to to corresponding CDS from Y.pestis KIM5 pCD1 (EMBL:AF053946%2C AF074612) (306 aa)%2C fasta scores%3B opt: 1866 z-score: 3193.5 E(): 0%2C 100.0%25 identity in 306 aa overlap. Highly similar to YOPD_YERPS (EMBL:L06215)%2C yopD%2C from Yersinia pseudotuberculosis plasmid pIB1 (306 aa) (99.7%25 identity in 306 aa overlap) and YOPD_YEREN (EMBL:L06216)%2C yopD%2C from Yersinia enterocolitica plasmid pYVE227 (306 aa) (98.4%25 identity in 306 aa overlap). Similar to TR:O50280 (EMBL:AF035922)%2C pepD%2C Pseudomonas aeruginosa type III secretion system component (295 aa) (40.1%25 identity in 287 aa overlap) gene gene4107 http://www.ncbi.nlm.nih.gov/gene/?term= 4211388 4211472 - tRNA-Tyr tRNA Tyr anticodon GTA%2C Cove score 66.93 tRNA rna88 http://www.ncbi.nlm.nih.gov/gene/?term= YPMT1.40c YPMT1.40c 40069 41985 - putative exonuclease subunit 2 YPMT1.40c%2C possible exonuclease subunit 2%2C len: 638 aa%3B weakly similar to e.g. EXO2_BPT4 (EMBL:X01804) bacteriophage T4 exonuclease subunit 2 (560 aa)%2C fasta scores%3B opt: 204 z-score: 221.9 E(): 4.7e-05%2C 21.3%25 identity in 634 aa overlap. Identical to ORF Y1008 from Y.pestis KIM5 pMT1 (642 aa) (100.0%25 identity in 638 aa overlap) / TR:O68756 (EMBL:AF053947) from Y.pestis KIM5 pMT1 (627 aa) (100.0%25 identity in 627 aa overlap) which have different putative start codons. Contains probable coiled-coils from 171 to 226 (56 residues) (Max score: 1.428%2C probability 0.81)%2C from 349 to 377 (29 residues) (Max score: 1.451%2C probability 0.87) and from 440 to 481 (42 residues) (Max score: 1.493%2C probability 0.94). Contains PS00017 ATP/GTP-binding site motif A (P-loop) gene gene4220 http://www.ncbi.nlm.nih.gov/gene/?term= YPCD1.87c YPCD1.87c 60568 61632 - putative yadA invasin pseudogene YPCD1.87c%2C yadA%2C yopA%2C probable yadA invasin pseudogene%2C len: 1065 aa%3B highly similar to YADA_YERPS (EMBL:X13883)%2C yadA%2C from Yersinia pseudotuberculosis plasmid pIB1%2C missing the N-terminal 79 amino acids due a frameshift pseudogene gene4166 http://www.ncbi.nlm.nih.gov/gene/?term= 16S_rRNA 16S_rRNA 3652660 3654148 - match to 16S_rRNA 1..14789 (EMBL:YPE16SA) rRNA gene3223 http://www.ncbi.nlm.nih.gov/gene/?term= YPCD1.50 YPCD1.50 37006 37104 + hypothetical protein YPCD1.50 YPCD1.50%2C yscA%2C hypothetical protein%2C len: 32 aa%3B improbable CDS identical to corresponding CDS from Y.pestis KIM5 pCD1 (EMBL:AF053946%2C AF074612) (32 aa)%2C fasta scores%3B opt: 215 z-score: 473.9 E(): 4.2e-19%2C 100.0%25 identity in 32 aa overlap. Highly similar to YSCA_YEREN (EMBL:M74011)%2C yscA%2C from Yersinia enterocolitica plasmid pYV (32 aa) (87.5%25 identity in 32 aa overlap) gene gene4129 http://www.ncbi.nlm.nih.gov/gene/?term= 2440767 2440851 - tRNA-Tyr tRNA Tyr anticodon GTA%2C Cove score 66.93 tRNA rna50 http://www.ncbi.nlm.nih.gov/gene/?term= 1384371 1384458 + tRNA-Ser tRNA Ser anticodon TGA%2C Cove score 68.39 tRNA rna32 http://www.ncbi.nlm.nih.gov/gene/?term= YPO0001 YPO0001 YPO0001 271 711 - putative flavoprotein Similar to the FMN-binding domain of many flavoproteins e.g. Salmonella typhimurium sulfite reductase [NADPH] flavoprotein alpha-component CysJ SW:CYSJ_SALTY (P38039) (598 aa) fasta scores: E(): 3.8e-06%2C 32.0%25 id in 128 aa. Also highly similar over entire range to Escherichia coli MioC protein%2C the fuction of which in a chromosomal context%2C is unknown SW:MIOC_ECOLI (P03817) (146 aa) fasta scores: E(): 0%2C 66.9%25 id in 145 aa gene gene0 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0001 YPO0002 YPO0002 asnC asnC 804 1265 - regulatory protein Similar to the Escherichia coli regulator of AnsA: AsnC SW:ASNC_ECOLI (P03809) (152 aa) fasta scores: E(): 0%2C84.8%25 id in 151 aa gene gene1 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0002 YPO0003 YPO0003 asnA asnA 1435 2427 + aspartate-ammonia ligase Similar to Escherichia coli aspartate-ammonia ligase AsnA SW:ASNA_ECOLI (P00963) (330 aa) fasta scores: E(): 0%2C78.5%25 id in 330 aa gene gene2 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0003 YPO0004 YPO0004 YPO0004 2526 3992 - conserved hypothetical protein Similar to Vibrio cholerae hypothetical protein VCA0762 TR:Q9KLI2 (EMBL:AE004404) (481 aa) fasta scores: E(): 0%2C 34.1%25 id in 496 aa gene gene3 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0004 YPO0005 YPO0005 YPO0005 3996 5549 - conserved hypothetical protein Similar to Escherichia coli hypothetical protein YieN SW:YIEN_ECOLI (P31473) (498 aa) fasta scores: E(): 0%2C67.8%25 id in 497 aa gene gene4 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0005 YPO0006 YPO0006 kup kup 5823 7691 + potassium transport protein Similar to Escherichia coli low affinity potassium uptake system protein Kup SW:KUP_ECOLI (P30016) (622 aa) fasta scores: E(): 0%2C 84.2%25 id in 622 aa gene gene5 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0006 YPO0007 YPO0007 YPO0007 7896 8315 + ribose permease Similar to Lactobacillus sake ribose permease RbsD TR:Q9X4M4 (EMBL:AF115391) (131 aa) fasta scores: E(): 5.7e-18%2C 39.6%25 id in 139 aa%2C and to Escherichia coli high affinity ribose transport protein RbsD SW:RBSD_ECOLI (P04982) (151 aa) fasta scores: E(): 0%2C 68.3%25 id in 139 aa. Although lacks the first 12 amino acids of the E. coli protein gene gene6 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0007 YPO0008 YPO0008 rbsK rbsK 8366 9292 + ribokinase Similar to Escherichia coli ribokinase RbsK SW:RBSK_ECOLI (P05054) (309 aa) fasta scores: E(): 0%2C 71.4%25 id in 304 aa gene gene7 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0008 YPO0009 YPO0009 YPO0009 9512 10936 - putative membrane transport protein Similar to many proteins belonging to the major facilitator family of drug resistance translocases e.g. Neisseria gonorrhoeae efflux transporter membrane protein AgrA TR:BAB13740 (EMBL:AB032563) (468 aa) fasta scores: E(): 0%2C 45.4%25 id in 460 aa Also highly similar to Escherichia coli hypothetical 51.5 kDa protein in rbsr-rrsc intergenic region yieO SW:YIEO_ECOLI (P31474) (475 aa) fasta scores: E(): 0%2C 74.2%25 id in 457 aa gene gene8 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0009 YPO0010 YPO0010 YPO0010 11016 11705 - putative GntR-famly transcriptional regulator Similar to several including: Streptomyces coelicolor putative GntR-famly transcriptional regulator scf37.08 TR:Q9RJZ3 (EMBL:AL133210) (246 aa) fasta scores: E(): 6.5e-18%2C 32.6%25 id in 215 aa and Escherichia coli hypothetical protein YieP SW:YIEP_ECOLI (P31475) (181 aa) fasta scores: E(): 0%2C 64.1%25 id in 181 aa gene gene9 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0010 YPO0011 YPO0011 y1062 y1062 17906 19114 + transposase for the IS285 insertion element Previously sequenced Yersinia pestis transposase Y1062 or Ypmt1.80C TR:O68779 (EMBL:AF053947) (402 aa) fasta scores: E(): 0%2C 100.0%25 id in 402 aa. gene gene13 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0011 YPO0012 YPO0012 mobB mobB 19172 19702 - probable molybdopterin-guanine dinucleotide biosynthesis protein B Similar to Escherichia coli molybdopterin-guanine dinucleotide biosynthesis protein B%2C MobB SW:MOBB_ECOLI (P32125) (174 aa) fasta scores: E(): 0%2C 62.2%25 id in 164 aa gene gene14 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0012 YPO0013 YPO0013 chlB chlB 19702 20343 - molybdopterin-guanine dinucleotide biosynthesis protein A Similar to Escherichia coli molybdopterin-guanine dinucleotide biosynthesis protein A%2C MobA SW:MOBA_ECOLI (P32173) (194 aa) fasta scores: E(): 3.1e-31%2C 43.8%25 id in 194 aa%2C and to Vibrio cholerae molybdopterin-guanine dinucleotide biosynthesis protein A vc1526 TR:Q9KRV8 (EMBL:AE004231) (203 aa) fasta scores: E(): 6.2e-30%2C 46.6%25 id in 204 aa gene gene15 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0013 YPO0013a YPO0013a YPO0013a 20443 20712 + conserved hypothetical protein Similar to Pectobacterium carotovorum subsp. cartovorum hypothetical protein YihD TR:Q9RB12 (EMBL:AF146615) (89 aa) fasta scores: E(): 6.2e-31%2C 83.1%25 id in 89 aa and to Escherichia coli hypothetical protein YihD SW:YIHD_ECOLI (P32126) (89 aa) fasta scores: E(): 1.7e-28%2C 76.4%25 id in 89 aa gene gene16 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0013a YPO0014 YPO0014 YPO0014 20792 21778 + conserved hypothetical protein Similar to Pectobacterium carotovorum subsp. cartovorum hypothetical protein YihE TR:Q9RB11 (EMBL:AF146615) (328 aa) fasta scores: E(): 0%2C 74.1%25 id in 328 aa and to Escherichia coli hypothetical YihE SW:YIHE_ECOLI (P32127) (328 aa) fasta scores: E(): 0%2C 66.2%25 id in 328 aa gene gene17 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0014 YPO0015 YPO0015 dsbA dsbA 21806 22429 + secreted thiol:disulfide interchange protein DsbA Previously sequenced Yersinia pestis thiol:disulfide interchange protein DsbA SW:DSBA_YERPE (Q9XBV2) (207 aa) fasta scores: E(): 0%2C 100.0%25 id in 207 aa. Also highly similar to Erwinia carotovora thiol:disulfide interchange protein DsbA precursor SW:DSBA_ERWCA (Q9RB10) (207 aa) fasta scores: E(): 0%2C 81.6%25 id in 207 aa gene gene18 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0015 YPO0017 YPO0017 polA polA 22921 25719 + DNA polymerase I Highly similar to Escherichia coli DNA polymerase I SW:DPO1_ECOLI (P00582) (928 aa) fasta scores: E(): 0%2C 77.7%25 id in 933 aa gene gene19 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0017 YPO0018 YPO0018 tnp tnp 26128 26586 + transposase for the IS1541 insertion element Similar to Salmonella typhimurium%2C and Salmonella typhi transposase for insertion sequence IS200 TnpA SW:T200_SALTY (Q57334) (152 aa) fasta scores: E(): 0%2C 94.1%25 id in 152 aa. Also identical to the Yersinia pseudotuberculosis IS1541 element transposase Tnp TR:Q9X9F5 (EMBL:AJ238014) (152 aa) fasta scores: E(): 0%2C 100.0%25 id in 152 aa gene gene21 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0018 YPO0019 YPO0019 YPO0019 26838 27488 - conserved hypothetical protein Similar to Escherichia coli hypothetical GTP-binding protein YihA SW:YIHA_ECOLI (P24253) (210 aa) fasta scores: E(): 0%2C 81.1%25 id in 212 aa gene gene22 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0019 YPO0020 YPO0020 YPO0020 28233 28799 + conserved hypothetical protein Similar to Salmonella typhimurium hypothetical protein YihI SW:YIHI_SALTY (P37130) (171 aa) fasta scores: E(): 3.7e-26%2C 51.9%25 id in 183 aa gene gene23 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0020 YPO0021 YPO0021 hemN hemN 28982 30355 + oxygen-independent coproporphyrinogen III oxidase Highly similar to Escherichia coli oxygen-independent coproporphyrinogen III oxidase HemN SW:HEMN_ECOLI (P32131) (457 aa) fasta scores: E(): 0%2C 78.6%25 id in 457 aa gene gene24 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0021 YPO0022 YPO0022 glnG glnG 30409 31821 - nitrogen regulation protein Highly similar to Escherichia coli nitrogen regulation protein NtrC SW:NTRC_ECOLI (P06713) (469 aa) fasta scores: E(): 0%2C 90.2%25 id in 470 aa gene gene25 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0022 YPO0023 YPO0023 glnR glnR 31829 32878 - Two component regulatory protein involved in nitrogen assimilation Similar to Escherichia coli nitrogen regulation protein NtrB SW:NTRB_ECOLI (P06712) (349 aa) fasta scores: E(): 0%2C 86.5%25 id in 349 aa gene gene26 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0023 YPO0024 YPO0024 glnA glnA 33131 34540 - glutamine synthetase Highly similar to Escherichia coli glutamine synthetase GlnA SW:GLNA_ECOLI (P06711) (468 aa) fasta scores: E(): 0%2C 91.5%25 id in 468 aa gene gene27 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0024 YPO0025 YPO0025 YPO0025 34726 34884 - possible membrane protein Doubtful CDS%2C No significant database hits gene gene28 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0025 YPO0026 YPO0026 bipA bipA 35102 36925 + putative GTPase Similar to Salmonella typhimurium GTPase BipA TR:CAC14270 (EMBL:AJ276889) (607 aa) fasta scores: E(): 0%2C89.1%25 id in 606 aa and to Escherichia coli GTP-binding protein BipA which has shown to be important for virulence of EPEC strains. SW:TYPA_ECOLI (P32132) (591 aa) fasta scores: E(): 0%2C 89.3%25 id in 591 aa gene gene29 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0026 YPO0027 YPO0027 YPO0027 37247 37837 + conserved hypothetical protein Similar to Escherichia coli hypothetical protein YihX SW:YIHX_ECOLI (P32145) (199 aa) fasta scores: E(): 0%2C67.2%25 id in 195 aa gene gene30 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0027 YPO0028 YPO0028 rbn rbn 37934 38818 + ribonuclease BN Similar to Escherichia coli ribonuclease BN Rbn necessary for the 3' maturation of tRNA SW:RBN_ECOLI (P32146) (290 aa) fasta scores: E(): 0%2C 69.9%25 id in 279 aa. Note the differing N-terminal region of these proteins. gene gene31 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0028 YPO0029 YPO0029 YPO0029 38825 39262 + conserved hypothetical protein Similar to Escherichia coli O157:H7 hypothetical protein YihZ TR:AAG59077 (EMBL:AE005619) (145 aa) fasta scores: E(): 0%2C 75.9%25 id in 145 aa gene gene32 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0029 YPO0030 YPO0030 ypmt1.57c ypmt1.57c 39336 40118 - insertion sequence IS100%2C ATP-binding protein Similar to Escherichia coli insertion sequence IS21 putative ATP-binding protein%2C IstB SW:ISTB_ECOLI (P15026) (265 aa) fasta scores: E(): 0%2C 47.4%25 id in 249 aa. Also almost identical to Yersinia pestis and Escherichia coli putative IS100 transposase ypmt1.57c TR:Q9R3L5 (EMBL:AL117211) (260 aa) fasta scores: E(): 0%2C 99.6%25 id in 260 aa. gene gene33 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0030 YPO0031 YPO0031 y1093 y1093 40115 41137 - transposase for insertion sequence IS100 Similar to Escherichia coli transposase for insertion sequence element IS21 IstA SW:ISTA_ECOLI (P15025) (390 aa) fasta scores: E(): 3e-27%2C 33.1%25 id in 329 aa. Identical to the previously sequenced Yersinia pestis%2CYersinia pseudotuberculosis%2C and Escherichia coli pesticin plasmid insertion sequence transposase Y1055 TR:P74993 (EMBL:U59875) (340 aa) fasta scores: E(): 0%2C 100.0%25 id in 340 aa gene gene34 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0031 YPO0032 YPO0032 YPO0032 41407 42330 + conserved membrane protein Similar to Escherichia coli hypothetical protein YiiD SW:YIID_ECOLI (P32148) (329 aa) fasta scores: E(): 0%2C83.9%25 id in 298 aa. Note lacks the first 16 amino acids of the E. coli orthologue. gene gene35 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0032 YPO0033 YPO0033 YPO0033 42465 44174 - possible exported protein Similar to Escherichia coli hypothetical protein YicH SW:YICH_ECOLI (P31433) (569 aa) fasta scores: E(): 0%2C49.0%25 id in 563 aa gene gene36 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0033 YPO0034 YPO0034 YPO0034 44322 45707 - putative membrane permease Similar to Escherichia coli putative purine permease YicE SW:YICE_ECOLI (P27432) (463 aa) fasta scores: E(): 0%2C84.0%25 id in 462 aa and to Vibrio cholerae xanthine/uracil permease family protein vc2712 TR:Q9KNM0 (EMBL:AE004337) (480 aa) fasta scores: E(): 0%2C 69.1%25 id in 450 aa gene gene37 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0034 YPO0035 YPO0035 gltC gltC 45945 47159 + sodium/glutamate symport carrier protein Highly similar to Escherichia coli sodium/glutamate symport carrier protein GltS SW:GLTS_ECOLI (P19933) (401 aa) fasta scores: E(): 0%2C 82.5%25 id in 399 aa gene gene38 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0035 YPO0036 YPO0036 recG recG 47525 49606 - ATP-dependent DNA helicase Similar to Escherichia coli ATP-dependent DNA helicase RecG SW:RECG_ECOLI (P24230) (693 aa) fasta scores: E(): 0%2C 81.5%25 id in 693 aa gene gene39 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0036 YPO0037 YPO0037 spoU spoU 49607 50299 - tRNA (guanosine-2'-O-)-methyltransferase Similar to Escherichia coli tRNA (guanosine-2'-O-)-methyltransferase%2C TrmH SW:TRMH_ECOLI (P19396) (229 aa) fasta scores: E(): 0%2C 82.8%25 id in 227 aa gene gene40 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0037 YPO0038 YPO0038 spoT spoT 50305 52413 - guanosine-3'%2C5'-bisbis(diphosphate) 3'-pyrophosphydrolase Similar to Escherichia coli guanosine-3'%2C5'-bis(diphosphate) 3'-pyrophosphydrolase%2Cmediator of the stringent response%2C SpoT SW:SPOT_ECOLI (P17580) (702 aa) fasta scores: E(): 0%2C 91.3%25 id in 702 aa gene gene41 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0038 YPO0039 YPO0039 rpoZ rpoZ 52433 52708 - DNA-directed RNA polymerase%2C omega chain Similar to Escherichia coli DNA-directed RNA polymerase omega chain RpoZ SW:RPOZ_ECOLI (P08374) (91 aa) fasta scores: E(): 6.2e-29%2C 92.3%25 id in 91 aa gene gene42 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0039 YPO0040 YPO0040 gmk gmk 52763 53386 - guanylate kinase Similar to Escherichia coli guanylate kinase Gmk SW:KGUA_ECOLI (P24234) (207 aa) fasta scores: E(): 0%2C 87.9%25 id in 207 aa gene gene43 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0040 YPO0041 YPO0041 YPO0041 53787 55490 + putative DNA ligase Similar to Chlamydia trachomatis DNA ligase LigA SW:DNLJ_CHLTR (O84148) (663 aa) fasta scores: E(): 3.1e-07%2C24.0%25 id in 555 aa%2C and to Escherichia coli hypothetical protein YicF SW:YICF_ECOLI (P25772) (560 aa) fasta scores: E(): 0%2C 43.8%25 id in 564 aa gene gene44 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0041 YPO0042 YPO0042 YPO0042 55503 56126 - putative membrane protein Similar to Escherichia coli hypothetical protein YicG SW:YICG_ECOLI (P31432) (205 aa) fasta scores: E(): 0%2C74.2%25 id in 182 aa and to Escherichia coli O157:H7 orf%2Chypothetical protein YicG TR:AAG58790 (EMBL:AE005592) (223 aa) fasta scores: E(): 0%2C 74.2%25 id in 182 aa gene gene45 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0042 YPO0043 YPO0043 YPO0043 56529 57392 - conserved hypothetical protein Similar to Escherichia coli hypothetical protein YicC SW:YICC_ECOLI (P23839) (287 aa) fasta scores: E(): 0%2C87.5%25 id in 287 aa gene gene46 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0043 YPO0044 YPO0044 rph rph 57519 58235 + ribonuclease PH Similar to Escherichia coli ribonuclease PH Rph SW:RNPH_ECOLI (P03842) (238 aa) fasta scores: E(): 0%2C 87.7%25 id in 236 aa gene gene47 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0044 YPO0045 YPO0045 pyrE pyrE 58402 59049 + orotate phosphoribosyltransferase Similar to Escherichia coli orotate phosphoribosyltransferase PyrE%2C involved in pyrimidine biosynthesis SW:PYRE_ECOLI (P00495) (212 aa) fasta scores: E(): 0%2C 85.8%25 id in 212 aa gene gene48 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0045 YPO0046 YPO0046 ttk ttk 59184 59780 - TetR-family regulatory protein Similar to Escherichia coli Ttk regulatory protein SW:TTK_ECOLI (P06969) (198 aa) fasta scores: E(): 0%2C 83.3%25 id in 198 aa gene gene49 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0046 YPO0047 YPO0047 dnaS dnaS 59902 60357 - deoxyuridine 5'-triphosphate nucleotidohydrolase Similar to Escherichia coli deoxyuridine 5'-triphosphate nucleotidohydrolase Dut%2C involved in nucleotide metabolism SW:DUT_ECOLI (P06968) (151 aa) fasta scores: E(): 0%2C 84.8%25 id in 151 aa gene gene50 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0047 YPO0048 YPO0048 dfp dfp 60338 61555 - DNA/pantothenate metabolism flavoprotein Similar to Escherichia coli DNA/pantothenate metabolism flavoprotein Dfp SW:DFP_ECOLI (P24285) (430 aa) fasta scores: E(): 0%2C 75.2%25 id in 407 aa%2C and to Vibrio cholerae DNA/pantothenate metabolism flavoprotein VC0215 TR:Q9KVD1 (EMBL:AE004111) (399 aa) fasta scores: E(): 0%2C66.2%25 id in 396 aa gene gene51 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0048 YPO0049 YPO0049 radC radC 61749 62417 + putative DNA repair protein Similar to Escherichia coli DNA repair protein RadC SW:RADC_ECOLI (P25531) (222 aa) fasta scores: E(): 0%2C 58.2%25 id in 213 aa gene gene52 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0049 YPO0050 YPO0050 rpmB rpmB 62680 62916 + 50S ribosomal protein L28 Similar to Escherichia coli 50S ribosomal protein L28 RpmB SW:RL28_ECOLI (P02428) (77 aa) fasta scores: E(): 1.1e-32%2C 92.2%25 id in 77 aa gene gene53 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0050 YPO0051 YPO0051 rpmG rpmG 62928 63095 + 50S ribosomal protein L33 Similar to Escherichia coli and Salmonella typhimurium 50S ribosomal protein L33 SW:RL33_ECOLI (P02436) (54 aa) fasta scores: E(): 1.7e-21%2C 96.3%25 id in 54 aa gene gene54 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0051 YPO0052 YPO0052 fpg fpg 63178 63987 + formamidopyrimidine-DNA glycosylase Similar to Escherichia coli formamidopyrimidine-DNA glycosylase involved in DNA-damage repair%2C MutM SW:FPG_ECOLI (P05523) (269 aa) fasta scores: E(): 0%2C 79.5%25 id in 268 aa gene gene55 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0052 YPO0053 YPO0053 coaD coaD 63993 64472 - phosphopantetheine adenylyltransferase Similar to Serratia marcescens phosphopantetheine adenylyltransferase CoaD SW:COAD_SERMA (Q9X980) (161 aa) fasta scores: E(): 0%2C 82.4%25 id in 159 aa%2C and to Escherichia coli phosphopantetheine adenylyltransferase KdtB SW:COAD_ECOLI (P23875) (159 aa) fasta scores: E(): 0%2C73.6%25 id in 159 aa gene gene56 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0053 YPO0054 YPO0054 kdtX kdtX 64469 65251 - lipopolysaccharide core biosynthesis glycosyl transferase Similar to Serratia marcescens lipopolysaccharide core biosynthesis glycosyl transferase KdtX SW:KDTX_SERMA (Q54435) (257 aa) fasta scores: E(): 0%2C 76.1%25 id in 259 aa and to Klebsiella pneumoniae lipopolysaccharide core biosynthesis glycosyl transferase WaaE SW:WAAE_KLEPN (Q9XC90) (258 aa) fasta scores: E(): 0%2C 70.6%25 id in 255 aa gene gene57 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0054 YPO0055 YPO0055 kdtA kdtA 65252 66529 - 3-deoxy-D-manno-octulosonic-acid transferase Similar to Escherichia coli 3-deoxy-D-manno-octulosonic-acid transferase KdtA SW:KDTA_ECOLI (P23282) (425 aa) fasta scores: E(): 0%2C 79.8%25 id in 425 aa and to Serratia marcescens KdtA TR:Q54434 (EMBL:U52844) (425 aa) fasta scores: E(): 0%2C 88.5%25 id in 425 aa gene gene58 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0055 YPO0056 YPO0056 rfa-2 rfa-2 66949 67914 - lipopolysaccharide heptosyltransferase-1 Similar to Escherichia coli lipopolysaccharide core biosynthesis heptosyltransferase-1 RfaC SW:RFAC_ECOLI (P24173) (319 aa) fasta scores: E(): 0%2C 68.3%25 id in 319 aa gene gene59 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0056 YPO0057 YPO0057 rfaF rfaF 67914 68978 - ADP-heptose--LPS heptosyltransferase II Similar to Escherichia coli ADP-heptose--LPS heptosyltransferase II RfaF%2C involved in LPS core biosynthesis%2C SW:RFAF_ECOLI (P37692) (348 aa) fasta scores: E(): 0%2C 73.8%25 id in 347 aa gene gene60 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0057 YPO0058 YPO0058 htrM htrM 69009 69941 - ADP-L-glycero-D-manno-heptose-6-epimerase Similar to Escherichia coli ADP-L-glycero-D-manno-heptose-6-epimerase RfaD%2C involved in lipopolysaccharide biosynthesis SW:RFAD_ECOLI (P17963) (310 aa) fasta scores: E(): 0%2C 83.1%25 id in 308 aa gene gene61 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0058 YPO0059 YPO0059 kbl kbl 70187 71398 + 2-amino-3-ketobutyrate coenzyme A ligase Similar to Escherichia coli 2-amino-3-ketobutyrate coenzyme A ligase Kbl SW:KBL_ECOLI (P07912) (398 aa) fasta scores: E(): 0%2C 84.8%25 id in 394 aa gene gene62 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0059 YPO0060 YPO0060 tdh tdh 71408 72433 + threonine 3-dehydrogenase Similar to Escherichia coli threonine 3-dehydrogenase Tdh SW:TDH_ECOLI (P07913) (341 aa) fasta scores: E(): 0%2C 92.1%25 id in 341 aa gene gene63 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0060 YPO0061 YPO0061 YPO0061 72571 73370 - conserved hypothetical protein (pseudogene) Similar to Escherichia coli hypothetical 30.7 kDa protein YibQ SW:YIBQ_ECOLI (P37691) (277 aa) fasta scores: E(): 4.2e-22%2C 58.5%25 id in 265 aa. Is likely to have undergone a deletion event which has also lead to a shift in reading frame (after aa 97). pseudogene gene64 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0061 YPO0063 YPO0063 YPO0063 73529 74881 - putative membrane protein Similar to many proteins of unknown function e.g. Escherichia coli hypothetical 46.6 kDa protein in secB-tdh intergenic region%2C YibP SW:YIBP_ECOLI (P37690) (419 aa) fasta scores: E(): 0%2C 63.2%25 id in 418 aa gene gene65 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0063 YPO0064 YPO0064 YPO0064 74909 76456 - 2%2C3-bisphosphoglycerate-independent phosphoglycerate mutase Similar to Escherichia coli 2%2C3-bisphosphoglycerate-independent phosphoglycerate mutase YibO SW:PMGI_ECOLI (P37689) (514 aa) fasta scores: E(): 0%2C83.3%25 id in 515 aa gene gene66 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0064 YPO0065 YPO0065 YPO0065 76853 77287 + putative membrane protein Similar to Escherichia coli hypothetical protein YibN SW:YIBN_ECOLI (P37688) (143 aa) fasta scores: E(): 0%2C65.7%25 id in 143 aa gene gene67 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0065 YPO0066 YPO0066 grxC grxC 77406 77654 + glutaredoxin Similar to Escherichia coli glutaredoxin 3 GrxC SW:GLR3_ECOLI (P37687) (82 aa) fasta scores: E(): 1.9e-27%2C77.8%25 id in 81 aa gene gene68 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0066 YPO0067 YPO0067 secB secB 77742 78218 + protein-export protein Similar to Escherichia coli protein-export protein SecB SW:SECB_ECOLI (P15040) (155 aa) fasta scores: E(): 0%2C91.8%25 id in 158 aa gene gene69 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0067 YPO0068 YPO0068 gpsA gpsA 78218 79237 + glycerol-3-phosphate dehydrogenase Similar to Escherichia coli glycerol-3-phosphate dehydrogenase [NAD+] GpsA SW:GPDA_ECOLI (P37606) (339 aa) fasta scores: E(): 0%2C 84.5%25 id in 336 aa gene gene70 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0068 YPO0069 YPO0069 YPO0069 79297 79437 + hypothetical protein No significant database hits gene gene71 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0069 YPO0070 YPO0070 cysE cysE 79503 80324 + serine acetyltransferase Similar to Escherichia coli serine acetyltransferase CysE involved in cysteine biosynthesis SW:CYSE_ECOLI (P05796) (273 aa) fasta scores: E(): 0%2C 86.1%25 id in 273 aa gene gene72 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0070 YPO0071 YPO0071 YPO0071 80447 80935 - putative methyltransferase Similar to Escherichia coli hypothetical tRNA/rRNA methyltransferase YibK SW:YIBK_ECOLI (P33899) (157 aa) fasta scores: E(): 0%2C 80.2%25 id in 162 aa and to Neisseria meningitidis RNA methyltransferase NMB0268 TR:Q9K199 (EMBL:AE002383) (154 aa) fasta scores: E(): 0%2C 61.0%25 id in 159 aa gene gene73 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0071 YPO0072 YPO0072 YPO0072 81124 82188 + bifunctional regulatory protein/DNA repair protein Similar to Escherichia coli Ada regulatory protein of the adaptive response%2C involved in DNA repair and global regulation SW:ADA_ECOLI (P06134) (354 aa) fasta scores: E(): 0%2C 52.8%25 id in 345 aa gene gene74 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0072 YPO0073 YPO0073 cpxA cpxA 82237 83613 - two component sensor kinase Similar to Escherichia coli two component sensor kinase%2C CpxA SW:CPXA_ECOLI (P08336) (457 aa) fasta scores: E(): 0%2C 80.8%25 id in 454 aa gene gene75 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0073 YPO0074 YPO0074 cpxR cpxR 83610 84308 - two component system response regulatory protein Similar to Escherichia coli two component system response regulatory protein CpxR SW:CPXR_ECOLI (P16244) (232 aa) fasta scores: E(): 0%2C 89.7%25 id in 232 aa gene gene76 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0074 YPO0075 YPO0075 cpxP cpxP 84482 84970 + putative exported protein Similar to Escherichia coli periplasmic protein CpxP precursor involved in detoxification of extracytoplasmic proteins: SW:CPXP_ECOLI (P32158) (166 aa) fasta scores: E(): 6.8e-23%2C 52.5%25 id in 162 aa gene gene77 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0075 YPO0076 YPO0076 YPO0076 85648 86607 + conserved hypothetical protein Similar to Salmonella typhimurium hypothetical protein SW:YTL2_SALTY (P37415) (313 aa) fasta scores: E(): 0%2C 62.3%25 id in 308 aa and to Yersinia pestis putative transposase Y1072%2C located on plasmid pMT1%2C TR:O68786 (EMBL:AF074611) (328 aa) fasta scores: E(): 0%2C 59.0%25 id in 312 aa gene gene78 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0076 YPO0077 YPO0077 YPO0077 87169 88071 + putative integral membrane protein Similar to several proteins of undefined function e.g. Vibrio cholerae hypothetical protein Vc2690 TR:Q9KNP1 (EMBL:AE004334) (302 aa) fasta scores: E(): 0%2C 62.1%25 id in 290 aa. Also similar to several putative efflux proteins e.g. Bacillus halodurans cation efflux system BH1238 TR:Q9KDH5 (EMBL:AP001511) (300 aa) fasta scores: E(): 7.5e-17%2C 27.4%25 id in 296 aa gene gene79 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0077 YPO0078 YPO0078 pfkA pfkA 88289 89272 + 6-phosphofructokinase Similar to Escherichia coli 6-phosphofructokinase isozyme I PfkA SW:K6P1_ECOLI (P06998) (320 aa) fasta scores: E(): 0%2C 75.2%25 id in 327 aa gene gene80 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0078 YPO0079 YPO0079 sbp1 sbp1 89493 90482 + exported sulfate-binding protein Similar to Escherichia coli sulfate-binding protein precursor Sbp involved in sulphate transport: SW:SUBI_ECOLI (P06997) (329 aa) fasta scores: E(): 0%2C 83.3%25 id in 329 aa gene gene81 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0079 YPO0080 YPO0080 YPO0080 90732 91550 - hypothetical protein Weakly similar to Bacillus subtilis hypothetical protein YvgL TR:O32208 (EMBL:Z99121) (260 aa) fasta scores: E(): 4.5e-05%2C 22.6%25 id in 261 aa gene gene82 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0080 YPO0081 YPO0081 YPO0081 91626 93053 - putative membrane transport protein Similar to several including: Escherichia coli hypothetical 51.4 kDa protein YbhI SW:YBHI_ECOLI (P75763) (477 aa) fasta scores: E(): 0%2C 52.2%25 id in 477 aa%2CArabidopsis thaliana 2-oxoglutarate/malate translocator protein TR:Q9LXV3 (EMBL:AL353013) (557 aa) fasta scores: E(): 0%2C 36.1%25 id in 465 aa and Neisseria meningitidis C4-dicarboxylate transporter NMB0470 TR:Q9K0U2 (EMBL:AE002404) (488 aa) fasta scores: E(): 0%2C 35.7%25 id in 479 aa gene gene83 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0081 YPO0082 YPO0082 YPO0082 93119 93832 - possible transferase Similar to Sphingomonas SPLB126 FldZ protein FldZ TR:Q9L3A1 (EMBL:AJ277295) (224 aa) fasta scores: E(): 0%2C61.6%25 id in 224 aa and to Pseudomonas ochraceae 4-hydroxy-4-methyl-2-oxoglutarate aldolase ProA TR:BAB21456 (EMBL:AB050935) (227 aa) fasta scores: E(): 0%2C 57.8%25 id in 223 aa. Note residue 6 offers an alternative translation initiation site gene gene84 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0082 YPO0083 YPO0083 YPO0083 93829 94761 - hypothetical protein Weakly similar to several proteins e.g. Pyrococcus horikoshii hypothetical 31.6 kDa protein PH0499 TR:O58235 (EMBL:AP000002) (272 aa) fasta scores: E(): 1.8e-05%2C 25.5%25 id in 247 aa gene gene85 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0083 YPO0084 YPO0084 YPO0084 94892 95938 + possible transcriptional regulator Similar to several including: Sphingomonas sp LB126 protein FldY TR:Q9L3A2 (EMBL:AJ277295) (383 aa) fasta scores: E(): 3.1e-24%2C 32.1%25 id in 271 aa and to Agrobacterium radiobacter putative transcriptional regulator PcaQ TR:AAG27520 (EMBL:AF230648) (315 aa) fasta scores: E(): 2e-17%2C 27.0%25 id in 293 aa gene gene86 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0084 YPO0085 YPO0085 tpi tpi 96170 96937 - triosephosphate isomerase Similar to Escherichia coli triosephosphate isomerase TpiA SW:TPIS_ECOLI (P04790) (255 aa) fasta scores: E(): 0%2C 82.4%25 id in 255 aa gene gene87 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0085 YPO0086 YPO0086 YPO0086 97066 97701 - putative exported protein Similar in parts to Escherichia coli hypothetical 21.8 kDa protein in YiiQ SW:YIIQ_ECOLI (P32160) (199 aa) fasta scores: E(): 0%2C 55.9%25 id in 195 aa gene gene88 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0086 YPO0087 YPO0087 YPO0087 97849 98283 + conserved membrane protein Similar to Escherichia coli hypothetical protein YiiR SW:YIIR_ECOLI (P32161) (146 aa) fasta scores: E(): 0%2C66.7%25 id in 141 aa and to Escherichia coli O157:H7 putative cytochrome YhaH TR:AAG58236 (EMBL:AE005540) (121 aa) fasta scores: E(): 0.00022%2C 30.5%25 id in 131 aa gene gene89 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0087 YPO0088 YPO0088 fpr fpr 98624 99370 - ferredoxin--NADP reductase Similar to Escherichia coli ferredoxin--NADP reductase Fpr SW:FENR_ECOLI (P28861) (247 aa) fasta scores: E(): 0%2C 74.1%25 id in 247 aa gene gene90 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0088 YPO0089 YPO0089 'glpX 'glpX 99525 100193 - GlpX protein (pseudogene) Partial CDS which is highly similar to Escherichia coli protein GlpX%2C a protein of unknown function thought to be involved in glycerol metabolism%2C SW:GLPX_ECOLI (P28860) (336 aa) fasta scores: E(): 0%2C 81.1%25 id in 222 aa. The predicted product of this CDS lacks 114 aa from the N-terminal following a likely deletion event pseudogene gene91 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0089 YPO0090 YPO0090 glpK' glpK' 100264 101355 - glycerol kinase (pseudogene) Partial CDS which is highly similar to Escherichia coli glycerol kinase GlpK SW:GLPK_ECOLI (P08859) (501 aa) fasta scores: E(): 0%2C 81.3%25 id in 380 aa. The predicted product of this CDS lacks approximately 120 aa from the C-terminal following a likely deletion event. pseudogene gene92 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0090 YPO0091 YPO0091 glpF glpF 101532 102380 - glycerol uptake facilitator protein Similar to Escherichia coli glycerol uptake facilitator protein GlpF SW:GLPF_ECOLI (P11244) (281 aa) fasta scores: E(): 0%2C 82.6%25 id in 282 aa gene gene93 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0091 YPO0092 YPO0092 YPO0092 102390 102629 - hypothetical protein No significant database hits gene gene94 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0092 YPO0093 YPO0093 YPO0093 103008 103247 + conserved hypothetical protein Similar to Escherichia coli hypothetical protein YiiU SW:YIIU_ECOLI (P32164) (81 aa) fasta scores: E(): 3.7e-19%2C 75.9%25 id in 79 aa gene gene95 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0093 YPO0094 YPO0094 tnp tnp 103455 103913 - transposase for the IS1541 insertion element Similar to Salmonella typhimurium and Salmonella typhi transposase for insertion sequence IS200%2C TnpA%2CSW:TNPA_SALTY (Q57334) (152 aa) fasta scores: E(): 0%2C 93.4%25 id in 152 aa. Almost identical to the Yersinia pseudotuberculosis IS1541 element transposase Tnp TR:Q9X9F5 (EMBL:AJ238014) (152 aa) fasta scores: E(): 0%2C 99.3%25 id in 152 aa gene gene96 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0094 YPO0095 YPO0095 YPO0095 104291 105577 - ABC-transport protein%2C ATP-binding component (pseudogene) Similar to Escherichia coli colicin V secretion ATP-binding protein CvaB SW:CVAB_ECOLI (P22520) (698 aa) fasta scores: E(): 0%2C 56.1%25 id in 699 aa. This CDS has been disrupted by the insertion of an IS100 element. pseudogene gene97 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0095 YPO0096 YPO0096 ypmt1.57c ypmt1.57c 105645 106427 - insertion sequence IS100%2C ATP-binding protein Similar to Escherichia coli insertion sequence IS21 putative ATP-binding protein%2C IstB SW:ISTB_ECOLI (P15026) (265 aa) fasta scores: E(): 0%2C 47.4%25 id in 249 aa. Identical to Yersinia pestis and Escherichia coli putative IS100 transposase ypmt1.57c TR:Q9R3L5 (EMBL:AL117211) (260 aa) fasta scores: E(): 0%2C 99.6%25 id in 260 aa. gene gene98 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0096 YPO0097 YPO0097 y1093 y1093 106424 107446 - transposase for insertion sequence IS100 Similar to Escherichia coli transposase for insertion sequence element IS21 IstA SW:ISTA_ECOLI (P15025) (390 aa) fasta scores: E(): 3e-27%2C 33.1%25 id in 329 aa. Identical to the previously sequenced Yersinia pestis%2CYersinia pseudotuberculosis%2C and Escherichia coli pesticin plasmid insertion sequence transposase Y1055 TR:P74993 (EMBL:U59875) (340 aa) fasta scores: E(): 0%2C 100.0%25 id in 340 aa gene gene99 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0097 YPO0098 YPO0098 YPO0098 107775 107840 - gene gene101 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0098 YPO0098 YPO0098 YPO0098 107673 107729 - gene gene100 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0098 YPO0099 YPO0099 YPO0099 108358 109593 - putative exported protein Similar to several members of the HlyD family of secretion proteins e.g. Escherichia coli colicin V secretion protein CvaA SW:CVAA_ECOLI (P22519) (413 aa) fasta scores: E(): 0%2C 47.1%25 id in 410 aa and to Escherichia coli MtfA TR:Q46972 (EMBL:U47048) (414 aa) fasta scores: E(): 0%2C 46.6%25 id in 410 aa gene gene102 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0099 YPO0100 YPO0100 YPO0100 109863 110102 + hypothetical protein no significant database hits gene gene103 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0100 YPO0101 YPO0101 YPO0101 110277 110426 + hypothetical protein Doubtful CDS with no significant database hits gene gene104 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0101 YPO0102 YPO0102 YPO0102 110732 111316 + putative exported protein No significant database hits gene gene105 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0102 YPO0103 YPO0103 menG menG 111433 111918 - S-adenosylmethionine:2-demethylmenaquinone methyltransferase Similar to Escherichia coli S-adenosylmethionine:2-demethylmenaquinone methyltransferase MenG SW:MENG_ECOLI (P32165) (161 aa) fasta scores: E(): 0%2C 87.6%25 id in 161 aa gene gene106 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0103 YPO0104 YPO0104 menA menA 112060 112977 - 1%2C4-dihydroxy-2-naphthoate octaprenyltransferase Highly similar to Escherichia coli 1%2C4-dihydroxy-2-naphthoate octaprenyltransferase MenA SW:MENA_ECOLI (P32166) (308 aa) fasta scores: E(): 0%2C 68.1%25 id in 298 aa gene gene107 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0104 YPO0105 YPO0105 hslU hslU 113213 114544 - ATP-binding heat shock protein Similar to Escherichia coli heat shock protein HslU SW:HSLU_ECOLI (P32168) (443 aa) fasta scores: E(): 0%2C 90.3%25 id in 443 aa gene gene108 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0105 YPO0106 YPO0106 hslV hslV 114615 115139 - heat shock protein Similar to Escherichia coli heat shock protein HslV SW:HSLV_ECOLI (P31059) (175 aa) fasta scores: E(): 0%2C 90.8%25 id in 173 aa gene gene109 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0106 YPO0107 YPO0107 ftsN ftsN 115239 116084 - cell division protein Similar to Escherichia coli cell division protein FtsN SW:FTSN_ECOLI (P29131) (319 aa) fasta scores: E(): 7.5e-24%2C 51.3%25 id in 320 aa gene gene110 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0107 YPO0108 YPO0108 cytR cytR 116150 117178 - transcriptional repressor Similar to Escherichia coli transcriptional repressor CytR SW:CYTR_ECOLI (P06964) (341 aa) fasta scores: E(): 0%2C 71.1%25 id in 339 aa gene gene111 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0108 YPO0110 YPO0110 priA priA 117531 119729 - primosomal protein n' Highly similar to Escherichia coli primosomal protein n' PriA SW:PRIA_ECOLI (P17888) (732 aa) fasta scores: E(): 0%2C 73.0%25 id in 732 aa gene gene112 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0110 YPO0111 YPO0111 rpmE rpmE 119972 120187 + 50S ribosomal protein L31 Similar to Escherichia coli 50S ribosomal protein L31 RpmE SW:RL31_ECOLI (P02432) (70 aa) fasta scores: E(): 1.4e-25%2C 81.4%25 id in 70 aa gene gene113 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0111 YPO0112 YPO0112 YPO0112 120748 121203 - conserved hypothetical protein Similar to Escherichia coli hypothetical protein YiaA SW:YIAA_ECOLI (P11287) (145 aa) fasta scores: E(): 0%2C62.5%25 id in 136 aa gene gene114 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0112 YPO0113 YPO0113 YPO0113 121254 121415 + hypothetical protein No significant database hits gene gene115 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0113 YPO0114 YPO0114 metJ metJ 121552 121869 - transcriptional repressor protein Similar to Escherichia coli methionine regulon repressor protein MetJ SW:METJ_ECOLI (P08338) (104 aa) fasta scores: E(): 0%2C 89.4%25 id in 104 aa gene gene116 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0114 YPO0115 YPO0115 metB metB 122247 123406 + cystathionine gamma-synthase (pseudogene) Similar to Escherichia coli cystathionine gamma-synthase MetB%2C the second stage in methionine biosynthetic pathway SW:METB_ECOLI (P00935) (386 aa) fasta scores: E(): 0%2C 83.3%25 id in 383 aa. This CDS possesses a frameshift mutation following codon 329. The sequence has been checked and is believed to be correct pseudogene gene117 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0115 YPO0116 YPO0116 metL metL 123409 125844 + bifunctional aspartokinase/homoserine dehydrogenase II Similar to Escherichia coli bifunctional aspartokinase/homoserine dehydrogenase II MetL SW:AK2H_ECOLI (P00562) (809 aa) fasta scores: E(): 0%2C 84.0%25 id in 804 aa gene gene118 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0116 YPO0117 YPO0117 metF metF 126077 126961 + 5%2C10-methylenetetrahydrofolate reductase Similar to Erwinia carotovora 5%2C10-methylenetetrahydrofolate reductase MetF SW:METF_ERWCA (P71319) (298 aa) fasta scores: E(): 0%2C 91.8%25 id in 294 aa%2Cand to Escherichia coli 5%2C10-methylenetetrahydrofolate reductase MetF SW:METF_ECOLI (P00394) (296 aa) fasta scores: E(): 0%2C 86.4%25 id in 294 aa%3B~deleted EC_number 1.7.99.5 gene gene119 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0117 YPO0118 YPO0118 YPO0118 127139 127924 - transposase for insertion sequence IS1661 Similar to Escherichia coli insertion sequence IS1397 transposase%2C OrfB TR:Q47310 (EMBL:X92970) (240 aa) fasta scores: E(): 0%2C 53.0%25 id in 234 aa gene gene120 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0118 YPO0119 YPO0119 YPO0119 127978 128493 - insertion element DNA-binding protein Similar to Escherichia coli insertion element IS1397 OrfA hypothetical 20.1 kDa protein SW:YI9A_ECOLI (Q47309) (173 aa) fasta scores: E(): 2.3e-20%2C 39.6%25 id in 169 aa gene gene121 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0119 YPO0120 YPO0120 glpR glpR 128686 129444 - glycerol-3-phosphate repressor protein Similar to Escherichia coli glycerol-3-phosphate regulon repressor GlpR SW:GLPR_ECOLI (P09392) (252 aa) fasta scores: E(): 0%2C 77.0%25 id in 252 aa gene gene122 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0120 YPO0121 YPO0121 glpG glpG 129479 130315 - probable membrane protein Similar to Escherichia coli hypothetical protein GlpG SW:GLPG_ECOLI (P09391) (276 aa) fasta scores: E(): 0%2C52.7%25 id in 275 aa gene gene123 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0121 YPO0122 YPO0122 YPO0122 130333 130716 - conserved hypothetical protein Similar to Escherichia coli GlpE hypothetical protein SW:GLPE_ECOLI (P09390) (108 aa) fasta scores: E(): 5.9e-28%2C 66.3%25 id in 104 aa. Note alternative possible translational start site at codon 19 gene gene124 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0122 YPO0123 YPO0123 malT malT 131037 133748 - maltose regulon positive regulatory protein Similar to Escherichia coli positive regulator of the maltose regulon MalT SW:MALT_ECOLI (P06993) (901 aa) fasta scores: E(): 0%2C 74.2%25 id in 902 aa. gene gene125 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0123 YPO0124 YPO0124 malP malP 134066 136470 + maltodextrin phosphorylase (pseudogene) Similar to Escherichia coli maltodextrin phosphorylase%2C part of the E. coli maltose and maltodextrin transport and utilisation system%2C MalP SW:PHSM_ECOLI (P00490) (796 aa) fasta scores: E(): 0%2C 75.2%25 id in 801 aa. Contains a frameshift after codon 107. The sequence has been checked and is believed to be correct pseudogene gene126 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0124 YPO0126 YPO0126 malQ malQ 136483 138579 + 4-alpha-glucanotransferase Similar to Escherichia coli 4-alpha-glucanotransferase MalQ SW:MALQ_ECOLI (P15977) (694 aa) fasta scores: E(): 0%2C 68.5%25 id in 693 aa gene gene127 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0126 YPO0127 YPO0127 YPO0127 138908 139483 - conserved hypothetical protein Similar to Escherichia coli hypothetical protein YhgI SW:YHGI_ECOLI (P46847) (191 aa) fasta scores: E(): 0%2C89.5%25 id in 191 aa. Similar in small regions to nitrogen fixation proteins e.g. Bacillus halodurans nitrogen fixation protein BH3419 TR:Q9K7E5 (EMBL:AP001518) (79 aa) fasta scores: E(): 0.0062%2C 31.3%25 id in 80 aa gene gene128 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0127 YPO0128 YPO0128 YPO0128 139543 140244 - conserved hypothetical protein Similar to competence proteins from several e.g. Haemophilus influenzae competence protein ComF SW:COMF_HAEIN (P31773) (229 aa) fasta scores: E(): 1.9e-26%2C38.2%25 id in 228 aa. Also similar to Escherichia coli hypothetical 25.7 kDa protein in bioH-gntT intergenic region yhgH SW:YHGH_ECOLI (P46846) (227 aa) fasta scores: E(): 0%2C 47.6%25 id in 233 aa gene gene129 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0128 YPO0129 YPO0129 bioH bioH 140331 141107 + putative biotin biosynthesis protein Similar to Escherichia coli protein BioH%2C implicated in biotin biosynthesis%2C SW:BIOH_ECOLI (P13001) (256 aa) fasta scores: E(): 0%2C 64.6%25 id in 254 aa gene gene130 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0129 YPO0130 YPO0130 YPO0130 141277 141546 + putative exported protein Similar to Escherichia coli hypothetical protein precursor YhcN SW:YHCN_ECOLI (P46477) (87 aa) fasta scores: E(): 3.6e-08%2C 46.1%25 id in 89 aa gene gene131 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0130 YPO0131 YPO0131 YPO0131 141684 141941 - conserved hypothetical protein Similar to Escherichia coli hypothetical protein YhgG SW:YHGG_ECOLI (P46845) (78 aa) fasta scores: E(): 3.9e-13%2C 56.3%25 id in 71 aa gene gene132 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0131 YPO0132 YPO0132 feoB feoB 141977 144292 - ferrous iron transport protein B Similar to Escherichia coli ferrous iron transport protein B%2C FeoB SW:FEOB_ECOLI (P33650) (773 aa) fasta scores: E(): 0%2C 74.4%25 id in 774 aa gene gene133 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0132 YPO0133 YPO0133 feoA feoA 144384 144611 - hypothetical ferrous iron transport protein A Similar to Escherichia coli ferrous iron transport protein A%2C the function of which is not known%2C FeoA SW:FEOA_ECOLI (P33649) (75 aa) fasta scores: E(): 5.8e-19%2C77.5%25 id in 71 aa gene gene134 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0133 YPO0134 YPO0134 YPO0134 145135 147510 - conserved hypothetical protein Similar to Escherichia coli protein YhgF SW:YHGF_ECOLI (P46837) (773 aa) fasta scores: E(): 0%2C 82.7%25 id in 791 aa. Also similar to a transcriptional accessory protein from Bordetella pertussis%2C the exact function of which is not known: Tex protein SW:TEX_BORPE (Q45388) (791 aa) fasta scores: E(): 0%2C 58.6%25 id in 783 aa gene gene135 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0134 YPO0135 YPO0135 greB greB 148044 148559 + transcription elongation factor Similar to Haemophilus influenzae transcription elongation factor GreB SW:GREB_HAEIN (P43882) (158 aa) fasta scores: E(): 0%2C 74.4%25 id in 156 aa gene gene136 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0135 YPO0136 YPO0136 kmt kmt 148695 149414 + transcriptional regulatory protein Similar to Escherichia coli transcriptional regulatory protein OmpR SW:OMPR_ECOLI (P03025) (239 aa) fasta scores: E(): 0%2C 98.7%25 id in 239 aa and to Yersinia enterocolitica OmpR TR:P74982 (EMBL:Y08950) (239 aa) fasta scores: E(): 0%2C 98.7%25 id in 239 aa gene gene137 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0136 YPO0137 YPO0137 envZ envZ 149411 150763 + osmolarity sensor protein Similar to Escherichia coli osmolarity sensor protein EnvZ SW:ENVZ_ECOLI (P02933) (450 aa) fasta scores: E(): 0%2C 86.6%25 id in 440 aa%2C and to Yersinia enterocolitica EnvZ TR:O06468 (EMBL:Y08950) (450 aa) fasta scores: E(): 0%2C93.8%25 id in 450 aa gene gene138 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0137 YPO0138 YPO0138 pck pck 150898 152517 - phosphoenolpyruvate carboxykinase [ATP] Similar to Escherichia coli phosphoenolpyruvate carboxykinase [ATP]%2C PckA SW:PPCK_ECOLI (P22259) (540 aa) fasta scores: E(): 0%2C 87.9%25 id in 535 aa gene gene139 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0138 YPO0139 YPO0139 hslO hslO 152714 153595 - heat-shock chaperonin Similar to Escherichia coli 33 kDa chaperonin HslO SW:HSLO_ECOLI (P45803) (292 aa) fasta scores: E(): 0%2C 71.7%25 id in 293 aa gene gene140 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0139 YPO0140 YPO0140 hslR hslR 153758 154165 - heat shock protein 15 Similar to Escherichia coli heat shock protein 15 HslR SW:HSLR_ECOLI (P45802) (133 aa) fasta scores: E(): 0%2C73.3%25 id in 135 aa gene gene141 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0140 YPO0141 YPO0141 YPO0141 154194 154874 - conserved hypothetical protein Similar to Escherichia coli hypothetical protein YrfG SW:YRFG_ECOLI (P45801) (222 aa) fasta scores: E(): 0%2C67.0%25 id in 221 aa gene gene142 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0141 YPO0142 YPO0142 YPO0142 155018 157165 - putative membrane protein Similar to Escherichia coli hypothetical 79.5 kDa protein in mrcA-pckA intergenic region YrfF SW:YRFF_ECOLI (P45800) (711 aa) fasta scores: E(): 0%2C 53.6%25 id in 715 aa and to Proteus mirabilis UmoB TR:O86988 (EMBL:U66822) (702 aa) fasta scores: E(): 0%2C 43.4%25 id in 719 aa gene gene143 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0142 YPO0143 YPO0143 YPO0143 157445 157639 + hypothetical protein Doubtful CDS with no significant database hits gene gene144 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0143 YPO0144 YPO0144 YPO0144 157752 158297 + putative hydrolase Similar to Escherichia coli ADP compounds hydrolase NudE SW:NUDE_ECOLI (P45799) (186 aa) fasta scores: E(): 0%2C74.7%25 id in 178 aa gene gene145 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0144 YPO0145 YPO0145 b3396 b3396 158433 160988 - penicillin-binding protein Similar to Escherichia coli penicillin-binding protein 1A MrcA SW:PBPA_ECOLI (P02918) (850 aa) fasta scores: E(): 0%2C 77.8%25 id in 851 aa gene gene146 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0145 YPO0146 YPO0146 YPO0146 161063 162004 + hypothetical protein Weakly similar to Escherichia coli hypothetical protein YrfD SW:YRFD_ECOLI (P45753) (259 aa) fasta scores: E(): 9.6e-09%2C 25.1%25 id in 291 aa gene gene147 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0146 YPO0147 YPO0147 YPO0147 162004 162609 + putative membrane protein Similar to Haemophilus influenzae competence protein B ComB SW:COMB_HAEIN (P31769) (168 aa) fasta scores: E(): 0.018%2C 26.6%25 id in 169 aa and to Escherichia coli hypothetical protein YrfC SW:YRFC_ECOLI (P45752) (179 aa) fasta scores: E(): 2.7e-07%2C 25.7%25 id in 179 aa gene gene148 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0147 YPO0148 YPO0148 YPO0148 162602 163183 + putative membrane protein No significant database hits gene gene149 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0148 YPO0149 YPO0149 YPO0149 163209 163577 + putative membrane protein Doubtful CDS%2C no significant database hits gene gene150 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0149 YPO0150 YPO0150 YPO0150 164004 165128 + putative membrane transport protein Similar to Haemophilus influenzae competence protein E precursor ComE or HI0435 SW:COME_HAEIN (P31772) (445 aa) fasta scores: E(): 0%2C 42.1%25 id in 387 aa%2C and to Escherichia coli protein transport protein hofQ precursor SW:HOFQ_ECOLI (P34749) (412 aa) fasta scores: E(): 0%2C 48.6%25 id in 381 aa. Note the differing N-terminal region and the low G+C content of the upstream DNA region. gene gene151 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0150 YPO0151 YPO0151 aroK aroK 165477 165998 + shikimate kinase I Similar to Escherichia coli shikimate kinase I AroK SW:AROK_ECOLI (P24167) (172 aa) fasta scores: E(): 0%2C 95.3%25 id in 172 aa gene gene152 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0151 YPO0152 YPO0152 aroB aroB 166055 167143 + 3-dehydroquinate synthase Similar to Escherichia coli 3-dehydroquinate synthase AroB SW:AROB_ECOLI (P07639) (362 aa) fasta scores: E(): 0%2C 81.4%25 id in 361 aa gene gene153 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0152 YPO0153 YPO0153 YPO0153 167397 168386 + conserved hypothetical membrane protein Similar to Escherichia coli DamX protein an inhibitor of cell-division%2C mode of action unknown%2CSW:DAMX_ECOLI (P11557) (427 aa) fasta scores: E(): 8.5e-18%2C41.6%25 id in 361 aa gene gene154 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0153 YPO0154 YPO0154 dam dam 168470 169285 + DNA adenine methylase Similar to Serratia marcescens DNA adenine methylase Dam SW:DMA_SERMA (P45454) (270 aa) fasta scores: E(): 0%2C84.8%25 id in 270 aa%2C and to Yersinia pseudotuberculosis DNA adenine methylase Dam TR:AAG23175 (EMBL:AF274318) (271 aa) fasta scores: E(): 0%2C 100.0%25 id in 271 aa gene gene155 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0154 YPO0155 YPO0155 rpe rpe 169588 170265 + ribulose-phosphate 3-epimerase Similar to Escherichia coli ribulose-phosphate 3-epimerase Rpe SW:RPE_ECOLI (P32661) (225 aa) fasta scores: E(): 0%2C 88.6%25 id in 220 aa gene gene156 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0155 YPO0156 YPO0156 gph gph 170258 170956 + phosphoglycolate phosphatase Similar to Escherichia coli phosphoglycolate phosphatase Gph SW:GPH_ECOLI (P32662) (252 aa) fasta scores: E(): 0%2C 60.5%25 id in 248 aa gene gene157 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0156 YPO0157 YPO0157 trpS trpS 170958 171998 + tryptophanyl-tRNA synthetase Similar to Escherichia coli tryptophanyl-tRNA synthetase TrpS SW:SYW_ECOLI (P00954) (334 aa) fasta scores: E(): 0%2C 85.2%25 id in 332 aa gene gene158 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0157 YPO0158 YPO0158 cysG cysG 172153 173565 - siroheme synthase Similar to Escherichia coli siroheme synthase involved in porphyrin biosynthesis%2C CysG SW:CYSG_ECOLI (P11098) (457 aa) fasta scores: E(): 0%2C 72.6%25 id in 456 aa gene gene159 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0158 YPO0159 YPO0159 nirC nirC 173653 174459 - putative nitrite transporter Similar to Escherichia coli putative nitrite transporter NirC SW:NIRC_ECOLI (P11097) (268 aa) fasta scores: E(): 0%2C 82.7%25 id in 266 aa gene gene160 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0159 YPO0160 YPO0160 nirD nirD 174662 174988 - nitrite reductase [NAD Similar to Escherichia coli nitrite reductase NirD SW:NIRD_ECOLI (P23675) (108 aa) fasta scores: E(): 1.6e-32%2C69.8%25 id in 106 aa gene gene161 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0160 YPO0161 YPO0161 nirB nirB 174985 177531 - nitrite reductase Similar to Escherichia coli nitrite reductase NirB SW:NIRB_ECOLI (P08201) (847 aa) fasta scores: E(): 0%2C 82.7%25 id in 849 aa gene gene162 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0161 YPO0162 YPO0162 codA codA 177841 179151 + cytosine deaminase Similar to Escherichia coli cytosine deaminase CodA SW:CODA_ECOLI (P25524) (426 aa) fasta scores: E(): 0%2C 80.5%25 id in 425 aa gene gene163 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0162 YPO0163 YPO0163 YPO0163 179236 180420 - conserved integral membrane protein Similar to Escherichia coli hypothetical 43.2 kDa protein in ppiA-nirB intergenic region YhfC SW:YHFC_ECOLI (P21229) (393 aa) fasta scores: E(): 0%2C 74.8%25 id in 393 aa gene gene164 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0163 YPO0164 YPO0164 YPO0164 180906 182966 + putative membrane receptor protein Similar to Pseudomonas stutzeri outer membrane protein NosA TR:Q00620 (EMBL:M60717) (683 aa) fasta scores: E(): 0%2C 56.9%25 id in 640 aa and to Yersinia enterocolitica hemin receptor precursor HemR SW:HEMR_YEREN (P31499) (687 aa) fasta scores: E(): 1.8e-06%2C 22.7%25 id in 677 aa gene gene165 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0164 YPO0165 YPO0165 YPO0165 183067 184053 - LacI-family transcriptional regulator Similar to Vibrio cholerae transcriptional regulator%2C LacI family VC1286 TR:Q9KSH0 (EMBL:AE004208) (340 aa) fasta scores: E(): 0%2C 47.4%25 id in 331 aa gene gene166 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0165 YPO0166 YPO0166 YPO0166 184302 185615 - putative glycosyl hydrolase Similar to Escherichia coli 6-phospho-beta-glucosidase CelF SW:CELF_ECOLI (P17411) (449 aa) fasta scores: E(): 0%2C 43.2%25 id in 440 aa and to Vibrio cholerae 6-phospho-beta-glucosidase VC1284 TR:Q9KSH2 (EMBL:AE004207) (440 aa) fasta scores: E(): 0%2C 55.9%25 id in 433 aa gene gene167 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0166 YPO0167 YPO0167 ppiA ppiA 186131 186700 + peptidyl-prolyl cis-trans isomerase A Similar to Escherichia coli peptidyl-prolyl cis-trans isomerase A precursor PpiA SW:PPIA_ECOLI (P20752) (190 aa) fasta scores: E(): 0%2C 79.5%25 id in 190 aa gene gene168 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0167 YPO0168 YPO0168 YPO0168 187026 188567 + conserved hypothetical protein Similar to Escherichia coli hypothetical protein YjgR SW:YJGR_ECOLI (P39342) (500 aa) fasta scores: E(): 0%2C67.4%25 id in 513 aa gene gene169 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0168 YPO0169 YPO0169 pabA pabA 188810 189385 + para-aminobenzoate synthase glutamine amidotransferase component II Similar to para-aminobenzoate synthase glutamine amidotransferase components II from several including: Serratia marcescens SW:PABA_SERMA (P06195) (191 aa) fasta scores: E(): 0%2C 84.7%25 id in 189 aa and to Escherichia coli SW:PABA_ECOLI (P00903) (187 aa) fasta scores: E(): 0%2C 74.1%25 id in 189 aa gene gene170 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0169 YPO0170 YPO0170 argD argD 192005 192694 + acetylornithine aminotransferase (pseudogene) Similar to Escherichia coli acetylornithine aminotransferase ArgD SW:ARGD_ECOLI (P18335) (405 aa) fasta scores: E(): 0%2C 77.2%25 id in 403 aa. This CDS is interrupted by a IS100 element. pseudogene gene171 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0170 YPO0171 YPO0171 y1093 y1093 190137 191159 + transposase for insertion sequence IS100 Similar to Escherichia coli transposase for insertion sequence element IS21 IstA SW:ISTA_ECOLI (P15025) (390 aa) fasta scores: E(): 3e-27%2C 33.1%25 id in 329 aa. Identical to the previously sequenced Yersinia pestis%2CYersinia pseudotuberculosis%2C and Escherichia coli pesticin plasmid insertion sequence transposase Y1055 TR:P74993 (EMBL:U59875) (340 aa) fasta scores: E(): 0%2C 100.0%25 id in 340 aa gene gene172 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0171 YPO0172 YPO0172 ypmt1.57c ypmt1.57c 191156 191938 + insertion sequence IS100%2C ATP-binding protein Similar to Escherichia coli insertion sequence IS21 putative ATP-binding protein%2C IstB SW:ISTB_ECOLI (P15026) (265 aa) fasta scores: E(): 0%2C 47.4%25 id in 249 aa. Also almost identical to Yersinia pestis and Escherichia coli putative IS100 transposase ypmt1.57c TR:Q9R3L5 (EMBL:AL117211) (260 aa) fasta scores: E(): 0%2C 99.6%25 id in 260 aa. gene gene173 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0172 YPO0174 YPO0174 YPO0174 192920 195040 - putative membrane protein Similar to Escherichia coli hypothetical 79.5 kDa protein in crp-argD intergenic region YhfK SW:YHFK_ECOLI (P45537) (696 aa) fasta scores: E(): 0%2C 56.4%25 id in 707 aa gene gene174 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0174 YPO0175 YPO0175 cap cap 195126 195758 - cAMP-regulatory protein Similar to Escherichia coli and Shigella flexneri catabolite gene activator Crp SW:CRP_ECOLI (P03020) (210 aa) fasta scores: E(): 0%2C 98.6%25 id in 210 aa gene gene175 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0175 YPO0176 YPO0176 YPO0176 196094 196501 + conserved hypothetical protein Similar to Escherichia coli hypothetical protein YhfA SW:YHFA_ECOLI (P24246) (134 aa) fasta scores: E(): 0%2C86.3%25 id in 131 aa gene gene176 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0176 YPO0177 YPO0177 YPO0177 196573 197004 + putative membrane protein No significant database hits. CDS DNA has a low G+C content (34%25). gene gene177 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0177 YPO0178 YPO0178 prk prk 197182 198051 - phosphoribulokinase 1 Similar to Rhodobacter sphaeroides phosphoribulokinase 1 PrkA SW:KPP1_RHOSH (P12033) (290 aa) fasta scores: E(): 0%2C 49.3%25 id in 290 aa and to Escherichia coli probable phosphoribulokinase PrkB SW:KPPR_ECOLI (P37307) (289 aa) fasta scores: E(): 0%2C 86.5%25 id in 288 aa gene gene178 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0178 YPO0179 YPO0179 YPO0179 198200 198436 - conserved hypothetical protein Similar to Escherichia coli hypothetical protein YheU SW:YHEU_ECOLI (P45536) (72 aa) fasta scores: E(): 4.3e-23%2C 76.1%25 id in 71 aa gene gene179 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0179 YPO0180 YPO0180 YPO0180 198433 199413 - conserved hypothetical protein Similar to many including: Vibrio cholerae hypothetical protein VC2610 TR:Q9KNX0 (EMBL:AE004327) (329 aa) fasta scores: E(): 0%2C 55.3%25 id in 320 aa gene gene180 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0180 YPO0181 YPO0181 YPO0181 199515 200117 + putative ABC-transport protein Similar to many including: Bacillus sp sodium-dependent serotonin transporter TR:O82971 (EMBL:AB015670) (198 aa) fasta scores: E(): 2.4e-13%2C 34.5%25 id in 197 aa and to Pseudomonas aeruginosa hypothetical protein Pa2306 TR:AAG05694 (EMBL:AE004657) (205 aa) fasta scores: E(): 1.4e-21%2C 38.5%25 id in 195 aa gene gene181 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0181 YPO0182 YPO0182 ssiA ssiA 200320 201381 + putative taurine-binding periplasmic protein precursor Similar to Escherichia coli taurine-binding periplasmic protein precursor TauA SW:TAUA_ECOLI (Q47537) (320 aa) fasta scores: E(): 0%2C 74.1%25 id in 313 aa%2C and to Pseudomonas aeruginosa probable periplasmic taurine-binding protein precursor PA3938 TR:AAG07325 (EMBL:AE004811) (337 aa) fasta scores: E(): 0%2C 50.2%25 id in 329 aa gene gene182 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0182 YPO0183 YPO0183 ssiB ssiB 201390 202157 + putative taurine transport ATP-binding protein Similar to Escherichia coli taurine transport ATP-binding protein TauB SW:TAUB_ECOLI (Q47538) (255 aa) fasta scores: E(): 0%2C 68.1%25 id in 254 aa%2C and to Pseudomonas aeruginosa probable ATP-binding component of ABC taurine transporter PA3937 TR:AAG07324 (EMBL:AE004811) (263 aa) fasta scores: E(): 0%2C 50.2%25 id in 241 aa gene gene183 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0183 YPO0184 YPO0184 ssiC ssiC 202154 203008 + putative taurine transport system permease protein Similar to Escherichia coli taurine transport system permease protein TauC SW:TAUC_ECOLI (Q47539) (275 aa) fasta scores: E(): 0%2C 75.4%25 id in 264 aa%2C and to Pseudomonas aeruginosa probable permease of ABC taurine transporter PA3936 TR:AAG07323 (EMBL:AE004811) (272 aa) fasta scores: E(): 0%2C 58.8%25 id in 267 aa gene gene184 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0184 YPO0185 YPO0185 ssiD ssiD 203005 203853 + putative taurine dioxygenase Similar to Escherichia coli alpha-ketoglutarate-dependent taurine dioxygenase TauD SW:TAUD_ECOLI (P37610) (282 aa) fasta scores: E(): 0%2C 76.1%25 id in 280 aa%2C and to Pseudomonas aeruginosa taurine dioxygenase TauD TR:AAG07322 (EMBL:AE004811) (277 aa) fasta scores: E(): 0%2C 60.6%25 id in 274 aa gene gene185 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0185 YPO0186 YPO0186 YPO0186 203866 204846 - putative sugar transferase Similar to Serratia marcescens putative heptosyl III transferase WaaQ TR:Q9X979 (EMBL:U52844) (337 aa) fasta scores: E(): 5.4e-13%2C 27.1%25 id in 343 aa and to Salmonella typhimurium lipopolysaccharide core biosynthesis protein WaaQ TR:O68270 (EMBL:AF026386) (344 aa) fasta scores: E(): 5.1e-09%2C 26.2%25 id in 302 aa gene gene186 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0186 YPO0187 YPO0187 YPO0187 204939 205928 - putative glycosyl transferase Similar to many transferases e.g. Klebsiella pneumoniae glycosyl transferase TR:Q9XC92 (EMBL:AF146532) (329 aa) fasta scores: E(): 2.1e-27%2C 29.4%25 id in 313 aa gene gene187 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0187 YPO0188 YPO0188 YPO0188 206063 207981 - binding protein dependent ABC-transport protein (pseudogene) Similar to Escherichia coli O157:H7 putative ATP-binding component of a transport system YheS TR:AAG58460 (EMBL:AE005558) (637 aa) fasta scores: E(): 0%2C80.9%25 id in 634 aa Note this CDS contains a possible frameshift mutation following codon 177. The sequence has been checked and is believed to be correct pseudogene gene188 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0188 YPO0190 YPO0190 YPO0190 208229 208780 + conserved hypothetical protein Similar to Escherichia coli putative NAD(P)H oxidoreductase%2C YheR SW:YHER_ECOLI (P45534) (184 aa) fasta scores: E(): 0%2C 75.3%25 id in 182 aa gene gene189 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0190 YPO0191 YPO0191 kefB kefB 208784 210592 + probable potassium-efflux system protein Similar to Escherichia coli glutathione-regulated potassium-efflux system protein KefB SW:KEFB_ECOLI (P45522) (601 aa) fasta scores: E(): 0%2C 77.9%25 id in 602 aa gene gene190 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0191 YPO0192 YPO0192 YPO0192 210608 210829 + conserved hypothetical protein Similar to several hypothetical proteins e.g. Escherichia coli hypothetical protein YheV SW:YHEV_ECOLI (P56622) (66 aa) fasta scores: E(): 8e-17%2C 60.3%25 id in 63 aa gene gene191 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0192 YPO0193 YPO0193 slyD slyD 210924 211511 + peptidyl-prolyl cis-trans isomerase Similar to Escherichia coli peptidyl-prolyl cis-trans isomerase SlyD SW:SLYD_ECOLI (P30856) (196 aa) fasta scores: E(): 0%2C 83.4%25 id in 199 aa gene gene192 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0193 YPO0194 YPO0194 YPO0194 211732 211965 - conserved hypothetical protein Similar to Escherichia coli SlyX protein of unknown function SW:SLYX_ECOLI (P30857) (72 aa) fasta scores: E(): 1.6e-15%2C 69.4%25 id in 72 aa gene gene193 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0194 YPO0195 YPO0195 fkpA fkpA 212265 213065 + peptidyl-prolyl cis-trans isomerase Similar to Escherichia coli FkbP-type peptidyl-prolyl cis-trans isomerase SW:FKBA_ECOLI (P45523) (270 aa) fasta scores: E(): 0%2C 76.0%25 id in 267 aa gene gene194 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0195 YPO0196 YPO0196 YPO0196 213307 214041 + putative DNA-binding protein Similar to Escherichia coli hypothetical protein YheO SW:YHEO_ECOLI (P45533) (240 aa) fasta scores: E(): 0%2C86.7%25 id in 240 aa%2C and to Vibrio cholerae hypothetical protein VC0355 vc0355 TR:Q9KV03 (EMBL:AE004124) (240 aa) fasta scores: E(): 0%2C 66.2%25 id in 234 aa gene gene195 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0196 YPO0197 YPO0197 YPO0197 214041 214436 + conserved hypothetical protein Similar to Escherichia coli hypothetical protein YheN SW:YHEN_ECOLI (P45532) (128 aa) fasta scores: E(): 0%2C73.4%25 id in 128 aa gene gene196 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0197 YPO0198 YPO0198 YPO0198 214436 214801 + conserved hypothetical protein Similar to Escherichia coli hypothetical protein YheM SW:YHEM_ECOLI (P45531) (119 aa) fasta scores: E(): 7.4e-29%2C 59.3%25 id in 118 aa and to Chromatium vinosum hypothetical protein%2C possibly involved in the intracellular sulfur oxidation%2C DsrF SW:DSRF_CHRVI (O87897) (136 aa) fasta scores: E(): 1.1e-05%2C 31.5%25 id in 89 aa gene gene197 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0198 YPO0199 YPO0199 YPO0199 214821 215108 + conserved hypothetical protein Similar to Escherichia coli hypothetical protein SW:YHEL_ECOLI (P45530) (95 aa) fasta scores: E(): 2.4e-16%2C50.5%25 id in 95 aa%2C and to Chromatium vinosum DsrH TR:O87898 (EMBL:U84760) (102 aa) fasta scores: E(): 7.2e-05%2C 33.7%25 id in 101 aa gene gene198 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0199 YPO0200 YPO0200 rpsl rpsl 215246 215620 + 30S ribosomal protein S12 Similar to Escherichia coli%2C and Salmonella typhimurium 30S ribosomal protein S12 RpsL SW:RS12_ECOLI (P02367) (123 aa) fasta scores: E(): 0%2C 95.9%25 id in 123 aa gene gene199 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0200 YPO0201 YPO0201 rpsG rpsG 215717 216187 + 30S ribosomal protein S7 Similar to Salmonella typhimurium 30S ribosomal protein S7 RpsG SW:RS7_SALTY (P26230) (155 aa) fasta scores: E(): 0%2C 94.8%25 id in 155 aa gene gene200 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0201 YPO0202 YPO0202 far far 216281 218389 + elongation factor G Similar to Escherichia coli elongation factor G FusA SW:EFG_ECOLI (P02996) (703 aa) fasta scores: E(): 0%2C 86.9%25 id in 703 aa gene gene201 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0202 YPO0203 YPO0203 tufA tufA 218462 219646 + elongation factor Tu Similar to Escherichia coli elongation factor Tu SW:EFTU_ECOLI (P02990) (393 aa) fasta scores: E(): 0%2C 95.2%25 id in 393 aa gene gene202 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0203 YPO0204 YPO0204 tnp tnp 219849 220307 + transposase for the IS1541 insertion element Similar to Salmonella typhimurium%2C and Salmonella typhi transposase for insertion sequence IS200 TnpA SW:T200_SALTY (Q57334) (152 aa) fasta scores: E(): 0%2C 94.1%25 id in 152 aa. Also identical to the Yersinia pseudotuberculosis IS1541 element transposase Tnp TR:Q9X9F5 (EMBL:AJ238014) (152 aa) fasta scores: E(): 0%2C 100.0%25 id in 152 aa gene gene203 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0204 YPO0205 YPO0205 bfd bfd 220495 220689 + putative bacterioferritin-associated ferredoxin Similar to Serratia marcescens bacterioferritin-associated ferredoxin Bfd SW:BFD_SERMA (O68934) (64 aa) fasta scores: E(): 1.2e-19%2C 73.4%25 id in 64 aa%2C and to Salmonella typhimurium bacterioferritin-associated ferredoxin Bfd SW:BFD_SALTY (O68925) (64 aa) fasta scores: E(): 5.5e-16%2C 56.2%25 id in 64 aa gene gene204 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0205 YPO0206 YPO0206 bfr bfr 220768 221241 + bacterioferritin Similar to Serratia marcescens bacterioferritin Bfr SW:BFR_SERMA (O68935) (159 aa) fasta scores: E(): 0%2C 89.6%25 id in 154 aa%2C and to Escherichia coli bacterioferritin Bfr SW:BFR_ECOLI (P11056) (158 aa) fasta scores: E(): 0%2C 79.6%25 id in 157 aa gene gene205 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0206 YPO0209 YPO0209 nusE nusE 221655 221966 + 30S ribosomal protein S10 Similar to Escherichia coli 30S ribosomal protein S10 RpsJ SW:RS10_ECOLI (P02364) (103 aa) fasta scores: E(): 0%2C 98.1%25 id in 103 aa gene gene206 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0209 YPO0210 YPO0210 rplC rplC 221999 222628 + 50S ribosomal protein L3 Similar to Escherichia coli 50S ribosomal protein L3 RplC SW:RL3_ECOLI (P02386) (209 aa) fasta scores: E(): 0%2C93.8%25 id in 209 aa gene gene207 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0210 YPO0211 YPO0211 eryA eryA 222645 223250 + 50S ribosomal protein L4 Similar to Escherichia coli 50S ribosomal protein L4 RplD SW:RL4_ECOLI (P02388) (201 aa) fasta scores: E(): 0%2C94.5%25 id in 201 aa and to Yersinia pseudotuberculosis 50S ribosomal protein L4 RplD SW:RL4_YERPS (P11253) (201 aa) fasta scores: E(): 0%2C 100.0%25 id in 201 aa gene gene208 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0211 YPO0212 YPO0212 rplW rplW 223247 223549 + 50S ribosomal protein L23 Similar to Escherichia coli 50S ribosomal protein L23 RplW SW:RL23_ECOLI (P02424) (100 aa) fasta scores: E(): 0%2C 92.0%25 id in 100 aa and to Yersinia pseudotuberculosis 50S ribosomal protein L23 RplW SW:RL23_YERPS (P11254) (100 aa) fasta scores: E(): 0%2C 100.0%25 id in 100 aa gene gene209 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0212 YPO0213 YPO0213 rplB rplB 223566 224390 + 50S ribosomal protein l2 Similar to Escherichia coli 50S ribosomal protein l2 RplB SW:RL2_ECOLI (P02387) (272 aa) fasta scores: E(): 0%2C96.0%25 id in 272 aa and identical to Yersinia pseudotuberculosis 50S ribosomal protein l2 RplB SW:RL2_YERPS (P11255) (274 aa) fasta scores: E(): 0%2C 100.0%25 id in 274 aa gene gene210 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0213 YPO0214 YPO0214 rpsS rpsS 224405 224683 + 30S ribosomal protein S19 Similar to Escherichia coli 30S ribosomal protein S19 RpsS SW:RS19_ECOLI (P02375) (91 aa) fasta scores: E(): 0%2C 95.6%25 id in 91 aa gene gene211 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0214 YPO0215 YPO0215 eryB eryB 224698 225030 + 50S ribosomal protein L22 Similar to Escherichia coli 50S ribosomal protein L22 RplV SW:RL22_ECOLI (P02423) (110 aa) fasta scores: E(): 0%2C 97.3%25 id in 110 aa gene gene212 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0215 YPO0216 YPO0216 rpsC rpsC 225048 225746 + 30S ribosomal protein S3 Similar to Escherichia coli 30S ribosomal protein S3 RpsC SW:RS3_ECOLI (P02352) (232 aa) fasta scores: E(): 0%2C98.3%25 id in 232 aa gene gene213 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0216 YPO0217 YPO0217 rplP rplP 225759 226169 + 50S ribosomal protein L16 Similar to Escherichia coli 50S ribosomal protein L16 RplP SW:RL16_ECOLI (P02414) (136 aa) fasta scores: E(): 0%2C 91.9%25 id in 136 aa gene gene214 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0217 YPO0218 YPO0218 rpmC rpmC 226169 226360 + 50S ribosomal protein L29 Similar to Escherichia coli 50S ribosomal protein L29 RpmC SW:RL29_ECOLI (P02429) (63 aa) fasta scores: E(): 1.3e-20%2C 93.7%25 id in 63 aa gene gene215 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0218 YPO0219 YPO0219 neaA neaA 226360 226614 + 30S ribosomal protein S17 Similar to Escherichia coli 30S ribosomal protein S17 RpsQ SW:RS17_ECOLI (P02373) (83 aa) fasta scores: E(): 0%2C 94.0%25 id in 83 aa gene gene216 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0219 YPO0220 YPO0220 rplN rplN 226795 227166 + 50S ribosomal protein L14 Similar to Escherichia coli 50S ribosomal protein L14 RplN SW:RL14_ECOLI (P02411) (123 aa) fasta scores: E(): 0%2C 97.6%25 id in 123 aa gene gene217 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0220 YPO0221 YPO0221 rplX rplX 227177 227491 + 50S ribosomal protein L24 Similar to Escherichia coli 50S ribosomal protein L24 RplX SW:RL24_ECOLI (P02425) (103 aa) fasta scores: E(): 0%2C 96.1%25 id in 103 aa gene gene218 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0221 YPO0222 YPO0222 rplE rplE 227506 228045 + 50S ribosomal protein L5 Similar to Escherichia coli 50S ribosomal protein L5 RplE SW:RL5_ECOLI (P02389) (178 aa) fasta scores: E(): 0%2C95.5%25 id in 178 aa gene gene219 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0222 YPO0222a YPO0222a rpsN rpsN 228059 228364 + 30S ribosomal protein S14 Similar to Escherichia coli 30S ribosomal protein S14 RpsN SW:RS14_ECOLI (P02370) (100 aa) fasta scores: E(): 0%2C 89.0%25 id in 100 aa gene gene220 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0222a YPO0223 YPO0223 rpsH rpsH 228398 228790 + 30S ribosomal protein S8 Similar to Escherichia coli 30S ribosomal protein S8 RpsH SW:RS8_ECOLI (P02361) (129 aa) fasta scores: E(): 0%2C94.6%25 id in 129 aa gene gene221 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0223 YPO0224 YPO0224 rplF rplF 228805 229338 + 50S ribosomal protein L6 Similar to Escherichia coli 50S ribosomal protein L6 RplF SW:RL6_ECOLI (P02390) (176 aa) fasta scores: E(): 0%2C89.8%25 id in 176 aa gene gene222 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0224 YPO0225 YPO0225 rplR rplR 229348 229701 + 50S ribosomal protein L18 Similar to Escherichia coli 50S ribosomal protein L18 RplR SW:RL18_ECOLI (P02419) (117 aa) fasta scores: E(): 0%2C 92.3%25 id in 117 aa gene gene223 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0225 YPO0226 YPO0226 rpsE rpsE 229716 230219 + 30S ribosomal protein S5 Similar to Escherichia coli 30S ribosomal protein S5 RpsE SW:RS5_ECOLI (P02356) (166 aa) fasta scores: E(): 0%2C95.8%25 id in 166 aa gene gene224 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0226 YPO0227 YPO0227 rpmD rpmD 230222 230401 + 50S ribosomal protein L30 Similar to Escherichia coli 50S ribosomal protein L30 RpmD SW:RL30_ECOLI (P02430) (58 aa) fasta scores: E(): 1.5e-22%2C 86.2%25 id in 58 aa gene gene225 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0227 YPO0228 YPO0228 rplO rplO 230405 230839 + 50S ribosomal protein L15 Similar to Escherichia coli 50S ribosomal protein L15 RplO SW:RL15_ECOLI (P02413) (144 aa) fasta scores: E(): 0%2C 85.4%25 id in 144 aa gene gene226 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0228 YPO0229 YPO0229 prlA prlA 230847 232178 + preprotein translocase SecY subunit Similar to Escherichia coli preprotein translocase SecY subunit SW:SECY_ECOLI (P03844) (443 aa) fasta scores: E(): 0%2C 98.0%25 id in 443 aa gene gene227 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0229 YPO0230 YPO0230 rpmJ rpmJ 232212 232328 + 50S ribosomal protein L36 Similar to Escherichia coli 50S ribosomal protein L36 RpmJ SW:RL36_ECOLI (P21194) (38 aa) fasta scores: E(): 2.1e-15%2C 94.7%25 id in 38 aa gene gene228 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0230 YPO0231 YPO0231 rpsM rpsM 232476 232832 + 30S ribosomal protein S13 Similar to Escherichia coli 30S ribosomal protein S13 RpsM SW:RS13_ECOLI (P02369) (117 aa) fasta scores: E(): 0%2C 85.5%25 id in 117 aa gene gene229 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0231 YPO0232 YPO0232 rpsK rpsK 232849 233238 + 30S ribosomal protein S11 Similar to Escherichia coli 30S ribosomal protein S11 RpsK SW:RS11_ECOLI (P02366) (128 aa) fasta scores: E(): 0%2C 98.4%25 id in 128 aa gene gene230 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0232 YPO0233 YPO0233 ramA ramA 233269 233889 + 30S ribosomal protein S4 Similar to Escherichia coli 30S ribosomal protein S4 RpsD SW:RS4_ECOLI (P02354) (205 aa) fasta scores: E(): 0%2C96.1%25 id in 205 aa gene gene231 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0233 YPO0234 YPO0234 rpoA rpoA 233915 234904 + DNA-directed RNA polymerase alpha chain Similar to Escherichia coli%2C and Salmonella typhimurium DNA-directed RNA polymerase alpha chain RpoA SW:RPOA_ECOLI (P00574) (329 aa) fasta scores: E(): 0%2C 99.4%25 id in 329 aa gene gene232 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0234 YPO0235 YPO0235 rplQ rplQ 234945 235334 + 50S ribosomal protein L17 Similar to Escherichia coli 50S ribosomal protein L17 RplQ SW:RL17_ECOLI (P02416) (127 aa) fasta scores: E(): 0%2C 94.5%25 id in 127 aa gene gene233 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0235 YPO0236 YPO0236 YPO0236 235781 236206 + MerR-family transcriptional regulator Similar to Escherichia coli zinc responsive regulator of the zinc/cadmium expoter%2C ZntR SW:ZNTR_ECOLI (P36676) (141 aa) fasta scores: E(): 0%2C 69.6%25 id in 135 aa gene gene234 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0236 YPO0237 YPO0237 YPO0237 236294 236494 + conserved hypothetical protein Similar to Escherichia coli hypothetical protein YhdL SW:YHDL_ECOLI (P36675) (72 aa) fasta scores: E(): 5.5e-17%2C 69.4%25 id in 62 aa gene gene235 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0237 YPO0238 YPO0238 mscL mscL 236604 237017 - mechanosensitive ion channel Similar to Escherichia coli O157:H7 mechanosensitive ion channel MscL TR:AAG58412 (EMBL:AE005556) (136 aa) fasta scores: E(): 0%2C 75.9%25 id in 137 aa gene gene236 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0238 YPO0239 YPO0239 trkA trkA 237156 238532 - trk system potassium uptake protein Similar to Escherichia coli Trk system potassium uptake protein TrkA SW:TRKA_ECOLI (P23868) (458 aa) fasta scores: E(): 0%2C 86.2%25 id in 458 aa gene gene237 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0239 YPO0240 YPO0240 YPO0240 238588 239877 - conserved hypothetical protein Similar to Escherichia coli hypothetical protein Sun which belongs to the Bacterial Sun-family and the Eukaryotic nucleolar Nol1/Nop2 family SW:SUN_ECOLI (P36929) (429 aa) fasta scores: E(): 0%2C 73.9%25 id in 429 aa gene gene238 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0240 YPO0241 YPO0241 fmt fmt 239971 240918 - methionyl-tRNA formyltransferase Similar to Escherichia coli methionyl-tRNA formyltransferase Fmt SW:FMT_ECOLI (P23882) (314 aa) fasta scores: E(): 0%2C 75.8%25 id in 314 aa gene gene239 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0241 YPO0242 YPO0242 def def 240943 241455 - polypeptide deformylase Similar to Escherichia coli polypeptide deformylase Def SW:DEF_ECOLI (P27251) (168 aa) fasta scores: E(): 0%2C89.3%25 id in 168 aa gene gene240 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0242 YPO0243 YPO0243 YPO0243 241590 242711 + conserved hypothetical protein Similar to Escherichia coli hypothetical protein Smf SW:SMF_ECOLI (P30852) (374 aa) fasta scores: E(): 0%2C 54.0%25 id in 374 aa%2C and to Haemophilus influenzae Smf protein SW:SMF_HAEIN (P43862) (373 aa) fasta scores: E(): 0%2C 44.0%25 id in 368 aa gene gene241 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0243 YPO0244 YPO0244 YPO0244 242719 243156 + conserved hypothetical protein Similar to Escherichia coli hypothetical protein Smg SW:SMG_ECOLI (P30853) (157 aa) fasta scores: E(): 0%2C 68.3%25 id in 145 aa gene gene242 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0244 YPO0245 YPO0245 YPO0245 243197 243736 + putative DNA-binding protein Similar to the C-terminal DNA-binding zinc finger domains of several DNA topoisomerases e.g. Bacillus subtilis SW:TOP1_BACSU (P39814) (691 aa) fasta scores: E(): 3.3e-15%2C 40.7%25 id in 108 aa. Also similar to Escherichia coli hypothetical protein YrdD SW:YRDD_ECOLI (P45771) (169 aa) fasta scores: E(): 0%2C 69.0%25 id in 155 aa gene gene243 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0245 YPO0245a YPO0245a YPO0245a 243738 244310 + conserved hypothetical protein Similar to Escherichia coli hypothetical protein YrdC SW:YRDC_ECOLI (P45748) (190 aa) fasta scores: E(): 0%2C67.9%25 id in 190 aa gene gene244 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0245a YPO0246 YPO0246 aroE aroE 244319 245140 + shikimate 5-dehydrogenase Similar to Escherichia coli shikimate 5-dehydrogenase AroE SW:AROE_ECOLI (P15770) (272 aa) fasta scores: E(): 0%2C 61.7%25 id in 269 aa gene gene245 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0246 YPO0247 YPO0247 YPO0247 245195 245725 - putative transferase (pseudogene) Similar to many proteins of undefined function e.g. Escherichia coli O157:H7 putative transferase z4650 TR:AAG58401 (EMBL:AE005555) (256 aa) fasta scores: E(): 0%2C72.7%25 id in 172 aa. This CDS has been disrupted by a IS100 element. pseudogene gene246 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0247 YPO0248 YPO0248 ypmt1.57c ypmt1.57c 245792 246574 - insertion sequence IS100%2C ATP-binding protein Similar to Escherichia coli insertion sequence IS21 putative ATP-binding protein%2C IstB SW:ISTB_ECOLI (P15026) (265 aa) fasta scores: E(): 0%2C 47.4%25 id in 249 aa. Also almost identical to Yersinia pestis and Escherichia coli putative IS100 transposase ypmt1.57c TR:Q9R3L5 (EMBL:AL117211) (260 aa) fasta scores: E(): 0%2C 99.6%25 id in 260 aa. gene gene247 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0248 YPO0249 YPO0249 y1093 y1093 246571 247593 - transposase for insertion sequence IS100 Similar to Escherichia coli transposase for insertion sequence element IS21 IstA SW:ISTA_ECOLI (P15025) (390 aa) fasta scores: E(): 3e-27%2C 33.1%25 id in 329 aa. Identical to the previously sequenced Yersinia pestis%2CYersinia pseudotuberculosis%2C and Escherichia coli pesticin plasmid insertion sequence transposase Y1055 TR:P74993 (EMBL:U59875) (340 aa) fasta scores: E(): 0%2C 100.0%25 id in 340 aa gene gene248 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0249 YPO0250 YPO0250 YPO0250 247679 248638 + putative hydrolase (pseudogene) Similar to Bacillus subtilis hypothetical protein YtaP TR:O34973 (EMBL:AF008220) (299 aa) fasta scores: E(): 1.8e-13%2C 30.0%25 id in 323 aa. This CDS has been disrupted by the insertion of an IS100 element. pseudogene gene249 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0250 YPO0251 YPO0251 YPO0251 248712 250367 - putative transmembrane transport protein Similar to many proposed sodium symporter family proteins including: Pseudomonas aeruginosa PA3234 TR:AAG06622 (EMBL:AE004746) (551 aa) fasta scores: E(): 0%2C83.3%25 id in 552 aa and to Haemophilus influenzae PutP SW:PUTP_HAEIN (P45174) (504 aa) fasta scores: E(): 1.1e-21%2C24.2%25 id in 466 aa gene gene250 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0251 YPO0252 YPO0252 YPO0252 250364 250675 - putative membrane protein Similar to Escherichia coli hypothetical 11.7 kDa protein in soxR-acs intergenic region YjcH SW:YJCH_ECOLI (P32706) (104 aa) fasta scores: E(): 1e-25%2C 64.7%25 id in 102 aa gene gene251 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0252 YPO0253 YPO0253 acs acs 250732 252690 - acetyl-coenzyme A synthetase Similar to Escherichia coli acetyl-coenzyme A synthetase Acs SW:ACSA_ECOLI (P27550) (652 aa) fasta scores: E(): 0%2C 84.8%25 id in 652 aa gene gene252 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0253 YPO0254 YPO0254 gltP gltP 253545 254861 + proton glutamate symport protein Similar to Escherichia coli proton glutamate symport protein GltP SW:GLTP_ECOLI (P21345) (437 aa) fasta scores: E(): 0%2C 81.0%25 id in 437 aa gene gene253 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0254 YPO0255 YPO0255 YPO0255 255039 255671 - putative two-component response regulator Similar to Salmonella typhimurium transcriptional activator SsrB TR:O54305 (EMBL:Z95891) (193 aa) fasta scores: E(): 0%2C 52.9%25 id in 189 aa%2C and to Pseudomonas aeruginosa response regulator GacA or Pa2586 TR:AAG05974 (EMBL:U27988) (214 aa) fasta scores: E(): 2.3e-22%2C 34.3%25 id in 207 aa gene gene254 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0255 YPO0256 YPO0256 YPO0256 255684 258503 - two-component sensor/regulator Similar to Salmonella typhimurium pathogenicity island regulator gene SpiR TR:P74862 (EMBL:U51927) (823 aa) fasta scores: E(): 0%2C 46.5%25 id in 826 aa and to Vibrio cholerae sensory box sensor histidine kinase/response regulator VieS VC1653 TR:Q9KRI8 (EMBL:AE004243) (1146 aa) fasta scores: E(): 0%2C 30.4%25 id in 559 aa. This CDS carries both the sensor and response regulator domains gene gene255 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0256 YPO0257 YPO0257 YPO0257 258675 260246 + possible type III secretion protein Similar to Salmonella typhimurium Pathogenicity island secretion protein SpiA TR:P74864 (EMBL:U51927) (497 aa) fasta scores: E(): 0%2C 51.5%25 id in 499 aa gene gene256 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0257 YPO0258 YPO0258 YPO0258 260248 261462 + putative type-III secretion protein Similar to several type III secretion proteins including: Escherichia coli EscD TR:O52148 (EMBL:AF022236) (406 aa) fasta scores: E(): 1.8e-26%2C 25.1%25 id in 414 aa and Yersinia enterocolitica Yop proteins translocation protein D YscD SW:YSCD_YEREN (Q01245) (418 aa) fasta scores: E(): 0.00018%2C 23.5%25 id in 404 aa gene gene257 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0258 YPO0259 YPO0259 YPO0259 261481 261702 + putative type III secretion apparatus Similar to Salmonella typhimurium putative secretory apparatus component SsaE TR:O84943 (EMBL:AF020808) (80 aa) fasta scores: E(): 0.15%2C 31.0%25 id in 71 aa gene gene258 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0259 YPO0260 YPO0260 YPO0260 261876 262496 + putative AraC-family regulatory protein Similar to the C-terminal DNA-binding domain of several AraC-family regulators e.g. Yersinia pestis thermoregulatory transcription factor LcrF TR:AAC62554 (EMBL:AF053946) (271 aa) fasta scores: E(): 3e-11%2C 37.9%25 id in 95 aa gene gene259 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0260 YPO0260a YPO0260a YPO0260a 262506 262721 + putative type III secretion apparatus Similar to Salmonella typhimurium putative secretory apparatus component SsaG or SsaH TR:O30903 (EMBL:AF020808) (71 aa) fasta scores: E(): 6.1e-06%2C 33.8%25 id in 71 aa gene gene260 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0260a YPO0261 YPO0261 YPO0261 262718 262966 + putative type III secretion apparatus Similar to Salmonella typhimurium putative secretory apparatus component SsaH or SsaI TR:O30904 (EMBL:AF020808) (75 aa) fasta scores: E(): 2.8e-05%2C 37.7%25 id in 61 aa gene gene261 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0261 YPO0262 YPO0262 YPO0262 263064 263315 + putative type III secretion apparatus Weakly similar to Salmonella typhimurium putative secretory apparatus component SsaI TR:Q9ZEF3 (EMBL:AJ224892) (82 aa) fasta scores: E(): 0.0041%2C 31.4%25 id in 70 aa gene gene262 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0262 YPO0263 YPO0263 YPO0263 263312 264043 + type III secretion system apparatus lipoprotein Similar to Salmonella typhimurium type III secretion system apparatus lipoprotein SsaJ SW:SSAJ_SALTY (P74852) (249 aa) fasta scores: E(): 0%2C 45.5%25 id in 253 aa gene gene263 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0263 YPO0264 YPO0264 YPO0264 264218 264811 + conserved hypothetical protein Similar to Escherichia coli L0051 TR:O85644 (EMBL:AF071034) (199 aa) fasta scores: E(): 0.011%2C 25.3%25 id in 174 aa. L0051 is located within a pathogenicity island gene gene264 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0264 YPO0265 YPO0265 YPO0265 264808 265455 + putative type III secretion system apparatus protein Similar to the C-terminus of the Salmonella typhimurium type III secretion system apparatus protein SsaK SW:SSAK_SALTY (P74853) (314 aa) fasta scores: E(): 1.2e-10%2C 30.1%25 id in 176 aa. Also similar over the entire range to Erwinia amylovora HrpE secretion protein TR:Q46622 (EMBL:U56662) (196 aa) fasta scores: E(): 0.73%2C 29.0%25 id in 186 aa gene gene265 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0265 YPO0266 YPO0266 YPO0266 265448 267496 + secretion system apparatus protein Similar to Salmonella typhimurium type III secretion system apparatus protein SsaV SW:SSAV_SALTY (P74856) (681 aa) fasta scores: E(): 0%2C 58.1%25 id in 670 aa gene gene266 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0266 YPO0267 YPO0267 YPO0267 267483 268820 + putative type III secretion system ATP synthase Similar to many secretion system proteins including: Salmonella typhimurium probable secretion system apparatus ATP synthase SsaN SW:SSAN_SALTY (P74857) (433 aa) fasta scores: E(): 0%2C 58.1%25 id in 432 aa%2C Pseudomonas aeruginosa ATP synthase in type III secretion system PA1697 TR:AAG05086 (EMBL:AE004596) (440 aa) fasta scores: E(): 0%2C55.8%25 id in 423 aa and to Bacillus subtilis flagellum-specific ATP synthase FliI SW:FLII_BACSU (P23445) (440 aa) fasta scores: E(): 0%2C 46.6%25 id in 423 aa. Note the overlap with the upstream CDS. gene gene267 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0267 YPO0268 YPO0268 YPO0268 268817 269218 + type III secretion system apparatus protein Similar to Erwinia amylovora HrpO TR:Q46643 (EMBL:L25828) (148 aa) fasta scores: E(): 0.0017%2C 34.1%25 id in 129 aa gene gene268 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0268 YPO0268a YPO0268a YPO0268a 269382 269597 + hypothetical protein Similar to the N-terminal region of Neisseria meningitidis glycerol-3-phosphate dehydrogenase [NAD(P)+] GpsA or Nma0375 TR:Q9JWH0 (EMBL:AL162753) (329 aa) fasta scores: E(): 1.2%2C 32.759%25 id in 58 aa gene gene269 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0268a YPO0269 YPO0269 YPO0269 269617 270537 + type III secretion system apparatus protein Similar to Salmonella typhimurium secretion system apparatus protein SsaQ SW:SSAQ_SALTY (P74860) (322 aa) fasta scores: E(): 1.1e-20%2C 26.3%25 id in 285 aa gene gene270 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0269 YPO0270 YPO0270 YPO0270 270664 271314 + putative type III secretion apparatus protein Similar to Salmonella typhimurium virulence protein YscR SW:YSCR_SALTY (P74890) (215 aa) fasta scores: E(): 0%2C59.9%25 id in 217 aa gene gene271 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0270 YPO0271 YPO0271 YPO0271 271311 271604 + putative type III secretion apparatus protein Similar to Salmonella typhimurium secretion system apparatus protein SsaS SW:SSAS_SALTY (P74891) (88 aa) fasta scores: E(): 5.8e-16%2C 60.8%25 id in 79 aa gene gene272 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0271 YPO0272 YPO0272 YPO0272 271606 272400 + putative type III secretion apparatus protein Similar to Salmonella typhimurium secretion system apparatus protein SsaT SW:SSAT_SALTY (P96068) (259 aa) fasta scores: E(): 0%2C 51.3%25 id in 234 aa gene gene273 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0272 YPO0273 YPO0273 YPO0273 272390 273457 + putative type III secretion apparatus protein Similar to Salmonella typhimurium secretion system apparatus protein SsaU SW:SSAU_SALTY (P96069) (352 aa) fasta scores: E(): 0%2C 48.6%25 id in 354 aa gene gene274 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0273 YPO0274 YPO0274 YPO0274 273840 275054 + putative integral membrane protein Similar to Escherichia coli hypothetical 44.4 kDa protein in amyA-fliE intergenic region YedE SW:YEDE_ECOLI (P31064) (401 aa) fasta scores: E(): 0%2C 78.0%25 id in 400 aa gene gene275 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0274 YPO0275 YPO0275 YPO0275 275051 275320 + conserved hypothetical protein Similar to Escherichia coli and Salmonella typhimurium hypothetical protein YedF SW:YEDF_ECOLI (P31065) (77 aa) fasta scores: E(): 1.5e-26%2C 94.6%25 id in 74 aa. Note alternative possible translational start site at codon 17 gene gene276 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0275 YPO0276 YPO0276 YPO0276 275398 276384 - putative LysR-family transcriptional regulator Similar to several putative regulators e.g. Pseudomonas aeruginosa probable transcriptional regulator PA0056 TR:AAG03446 (EMBL:AE004445) (306 aa) fasta scores: E(): 1.2e-30%2C 32.4%25 id in 293 aa gene gene277 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0276 YPO0277 YPO0277 YPO0277 276551 277837 + putative transmembrane transport protein Similar to many transport proteins e.g. Escherichia coli serine transporter SdaC SW:SDAC_ECOLI (P36559) (429 aa) fasta scores: E(): 6.7e-26%2C 25.2%25 id in 437 aa gene gene278 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0277 YPO0278 YPO0278 metC metC 277883 279064 + cystathionine beta-lyase Similar to Prokaryotic and Eukaryotic cystathionine beta-lyases including Escherichia coli MetC SW:METC_ECOLI (P06721) (395 aa) fasta scores: E(): 0%2C 42.6%25 id in 390 aa and Saccharomyces cerevisiae YFR055W SW:METC_YEAST (P43623) (340 aa) fasta scores: E(): 0%2C 64.1%25 id in 340 aa gene gene279 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0278 YPO0279 YPO0279 hmuV hmuV 279205 280005 - hemin transport system ATP-binding protein Previously sequenced Yersinia pestis hemin transport system ATP-binding protein HmuV SW:HMUV_YERPE (Q56993) (266 aa) fasta scores: E(): 0%2C 99.6%25 id in 266 aa gene gene280 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0279 YPO0280 YPO0280 hmuU hmuU 279998 281002 - hemin transport system permease protein HmuU Previously sequenced Yersinia pestis hemin transport system permease protein HmuU SW:HMUU_YERPE (Q56992) (334 aa) fasta scores: E(): 0%2C 100.0%25 id in 334 aa gene gene281 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0280 YPO0281 YPO0281 hmuT hmuT 280999 281838 - hemin-binding periplasmic protein Previously sequenced Yersinia pestis hemin-binding periplasmic protein HmuT precursor SW:HMUT_YERPE (Q56991) (279 aa) fasta scores: E(): 0%2C 100.0%25 id in 279 aa gene gene282 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0281 YPO0282 YPO0282 hmuS hmuS 281835 282872 - hemin transport protein Previously sequenced Yersinia pestis hemin transport protein HmuS SW:HMUS_YERPE (Q56990) (345 aa) fasta scores: E(): 0%2C 100.0%25 id in 345 aa gene gene283 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0282 YPO0283 YPO0283 hmuR hmuR 282991 285021 - hemin receptor precursor Previously sequenced Yersinia pestis hemin receptor precursor HmuR SW:HMUR_YERPE (Q56989) (676 aa) fasta scores: E(): 0%2C 100.0%25 id in 676 aa gene gene284 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0283 YPO0284 YPO0284 YPO0284 285436 286086 - conserved hypothetical protein Previously sequenced as Yersinia pestis hypothetical 23.2 kDa protein TR:Q56987 (EMBL:U60647) (216 aa) fasta scores: E(): 0%2C 100.0%25 id in 216 aa. Also similar to Shigella dysenteriae hypothetical 21.8 kDa protein ShuY TR:O70016 (EMBL:U64516) (207 aa) fasta scores: E(): 0%2C55.9%25 id in 211 aa gene gene285 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0284 YPO0285 YPO0285 YPO0285 286120 286665 - conserved hypothetical protein Previously sequenced as Yersinia pestis hypothetical protein TR:Q56986 (EMBL:U60647) (162 aa) fasta scores: E(): 0%2C 98.8%25 id in 162 aa. Also similar to Shigella dysenteriae hypothetical protein ShuX TR:O70017 (EMBL:U64516) (164 aa) fasta scores: E(): 0%2C 58.1%25 id in 160 aa. Note alternative possible translational start site at codon 13 gene gene286 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0285 YPO0286 YPO0286 YPO0286 286662 287975 - putative coproporphyrinogen III oxidase Similar to many coproporphyrinogen III oxidases including: Vibrio cholerae oxygen-independent coproporphyrinogen III oxidase VCA0909 TR:Q9KL39 (EMBL:AE004418) (455 aa) fasta scores: E(): 0%2C 37.9%25 id in 428 aa and to Escherichia coli oxygen-independent coproporphyrinogen III oxidase HemN SW:HEMN_ECOLI (P32131) (457 aa) fasta scores: E(): 4.7e-19%2C 26.9%25 id in 420 aa gene gene287 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0286 YPO0287 YPO0287 YPO0287 288316 289116 - putative methylenetetrahydrofolate reductase Similar to Haemophilus influenzae 5%2C10-methylenetetrahydrofolate reductase MetF SW:METF_HAEIN (P45208) (292 aa) fasta scores: E(): 4.6e-14%2C 26.8%25 id in 269 aa%3B~deleted EC_number 1.7.99.5 gene gene288 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0287 YPO0288 YPO0288 YPO0288 289431 289919 - putative exported protein Similar to Escherichia coli O157:H7 hypothetical protein TerW TR:AAG55309 (EMBL:AE005273) (155 aa) fasta scores: E(): 2.5e-24%2C 52.3%25 id in 149 aa%2C and to Serratia marcescens TerW TR:P75010 (EMBL:U49054) (155 aa) fasta scores: E(): 5.5e-24%2C 52.3%25 id in 149 aa gene gene289 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0288 YPO0289 YPO0289 YPO0289 290316 291275 - putative ATP/GTP-binding protein Similar to several proteins of undefined function including: Deinococcus radiodurans hypothetical protein DR2219 TR:Q9RSA7 (EMBL:AE002054) (310 aa) fasta scores: E(): 0%2C 40.5%25 id in 309 aa and Streptomyces coelicolor putative ATP/GTP-binding protein SCC8A.21c TR:Q9KY27 (EMBL:AL356892) (388 aa) fasta scores: E(): 5.7e-14%2C 32.6%25 id in 344 aa gene gene290 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0289 YPO0290 YPO0290 YPO0290 291275 292354 - conserved hypothetical protein Similar to Deinococcus radiodurans hypothetical protein DR2218 TR:Q9RSA8 (EMBL:AE002054) (353 aa) fasta scores: E(): 6.2e-23%2C 35.2%25 id in 338 aa gene gene291 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0290 YPO0291 YPO0291 YPO0291 292347 293159 - conserved hypothetical protein Similar to Deinococcus radiodurans hypothetical protein DR2215 TR:Q9RSB0 (EMBL:AE002054) (260 aa) fasta scores: E(): 3.3e-21%2C 36.1%25 id in 255 aa. Also similar to the C-terminus of Serratia marcescens plasmid hypothetical protein TR:P95795 (EMBL:U59239) (238 aa) fasta scores: E(): 3.3e-29%2C 87.1%25 id in 93 aa gene gene292 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0291 YPO0292 YPO0292 YPO0292 293152 294288 - conserved hypothetical protein Similar to Deinococcus radiodurans conserved hypothetical protein DR2214 TR:Q9RSB1 (EMBL:AE002054) (371 aa) fasta scores: E(): 0%2C 40.7%25 id in 369 aa. The N-terminus of this protein is similar to Serratia marcescens plasmid hypothetical protein TR:P95796 (EMBL:U59239) (197 aa) fasta scores: E(): 0%2C 70.4%25 id in 189 aa%2C and to gene gene293 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0292 YPO0293 YPO0293 YPO0293 294300 295361 - conserved hypothetical protein Similar to Streptomyces coelicolor hypothetical 41.6 kDa protein SC5A7.21c TR:O88027 (EMBL:AL031107) (388 aa) fasta scores: E(): 1.1e-14%2C 27.4%25 id in 328 aa. In addition the C-terminus of the product of this CDS is similar to Serratia marcescens plasmid hypothetical protein TR:P95797 (EMBL:U59239) (173 aa) fasta scores: E(): 0%2C 56.1%25 id in 171 aa gene gene294 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0293 YPO0294 YPO0294 terZ terZ 295637 296230 + tellurium resistance protein Similar to Serratia marcescens tellurium resistance protein TerZ SW:TERZ_SERMA (Q52353) (193 aa) fasta scores: E(): 0%2C 76.6%25 id in 197 aa and to Escherichia coli O157:H7 putative tellurium resistance protein TR:Q9LAN8 (EMBL:AF126104) (192 aa) fasta scores: E(): 9.9e-16%2C 40.2%25 id in 189 aa gene gene295 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0294 YPO0295 YPO0295 terA terA 296362 297414 + putative tellurite resistance protein Similar to Serratia marcescens tellurite resistance protein TerA TR:Q52354 (EMBL:U59239) (341 aa) fasta scores: E(): 0%2C 70.0%25 id in 350 aa gene gene296 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0295 YPO0296 YPO0296 terB terB 297447 297902 + tellurite resistance protein Similar to Serratia marcescens tellurite resistance protein TerB TR:Q52355 (EMBL:U59239) (151 aa) fasta scores: E(): 0%2C 71.5%25 id in 151 aa gene gene297 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0296 YPO0297 YPO0297 terC terC 297924 298961 + tellurium resistance protein Similar to Serratia marcescens tellurium resistance protein TerC SW:TERC_SERMA (Q52356) (346 aa) fasta scores: E(): 0%2C 83.3%25 id in 342 aa%2C and to Escherichia coli O157:H7 putative tellurium resistance protein D TR:Q9LAN7 (EMBL:AF126104) (89 aa) fasta scores: E(): 5.4e-21%2C 82.3%25 id in 79 aa gene gene298 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0297 YPO0298 YPO0298 terD terD 299025 299603 + tellurium resistance protein Similar to Serratia marcescens tellurium resistance protein TerD SW:TERD_SERMA (Q52357) (192 aa) fasta scores: E(): 0%2C 86.5%25 id in 192 aa and Escherichia coli O157:H7 putative tellurium resistance protein TR:Q9LAN8 (EMBL:AF126104) (192 aa) fasta scores: E(): 0%2C 85.9%25 id in 192 aa gene gene299 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0298 YPO0299 YPO0299 terE terE 299787 300362 + tellurium resistance protein Similar to Serratia marcescens tellurium resistance protein TerE SW:TERE_SERMA (Q52358) (191 aa) fasta scores: E(): 0%2C 84.3%25 id in 191 aa and to Escherichia coli O157:H7 putative tellurium resistance protein C%2C TlrC TR:Q9LAN8 (EMBL:AF126104) (192 aa) fasta scores: E(): 0%2C 64.7%25 id in 190 aa gene gene300 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0299 YPO0300 YPO0300 tnp tnp 300554 301012 + transposase for the IS1541 insertion element Similar to Salmonella typhimurium%2C and Salmonella typhi transposase for insertion sequence IS200 TnpA SW:T200_SALTY (Q57334) (152 aa) fasta scores: E(): 0%2C 94.1%25 id in 152 aa. Identical to the Yersinia pseudotuberculosis IS1541 element transposase Tnp TR:Q9X9F5 (EMBL:AJ238014) (152 aa) fasta scores: E(): 0%2C 100.0%25 id in 152 aa gene gene301 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0300 YPO0301 YPO0301 YPO0301 301786 302424 + putative exported protein Weakly similar to Escherichia coli protein GltF SW:GLTF_ECOLI (P28721) (254 aa) fasta scores: E(): 0.0025%2C25.5%25 id in 251 aa gene gene302 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0301 YPO0302 YPO0302 YPO0302 302675 305053 + putative outer membrane fimbrial usher protein Similar to several membrane usher proteins including: Salmonella enteritidis SefC SW:SEFC_SALEN (P33388) (814 aa) fasta scores: E(): 7.7e-22%2C 25.1%25 id in 804 aa and to Escherichia coli YhcD SW:YHCD_ECOLI (P45420) (793 aa) fasta scores: E(): 0%2C 27.4%25 id in 795 aa. gene gene303 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0302 YPO0303 YPO0303 YPO0303 305125 305868 + putative fimbrial chaperone Similar to Escherichia coli hypothetical 25.3 kDa fimbrial chaperone YhcA SW:YHCA_ECOLI (P28722) (224 aa) fasta scores: E(): 1.1e-17%2C 32.6%25 id in 190 aa gene gene304 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0303 YPO0304 YPO0304 YPO0304 305876 306133 + putative membrane protein No significant database hits gene gene305 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0304 YPO0306 YPO0306 YPO0306 307245 308645 + hypothetical protein No significant database hits gene gene306 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0306 YPO0307 YPO0307 YPO0307 309068 309322 + hypothetical protein No significant database hits gene gene307 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0307 YPO0308 YPO0308 YPO0308 309654 311711 + putative oxidoreductase Similar to the eukaryotic Chondrus crispus (red algae) hexose oxidase TR:P93762 (EMBL:U89770) (546 aa) fasta scores: E(): 0%2C 33.8%25 id in 551 aa. Note the C-terminus of this protein is similar to many chitinases e.g. Serratia marcescens ChiC TR:Q9WXD3 (EMBL:AB019238) (480 aa) fasta scores: E(): 2.1e-15%2C 43.1%25 id in 144 aa gene gene308 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0308 YPO0309 YPO0309 YPO0309 312055 315771 - putative exported protein Similar to Bordetella pertussis putative autotransporter protein%2C BapA TR:CAC14165 (EMBL:AJ277632) (903 aa) fasta scores: E(): 0%2C 34.0%25 id in 915 aa. Also similar in part to Salmonella typhimurium ShdA TR:Q9XCJ4 (EMBL:AF140550) (2035 aa) fasta scores: E(): 1.1e-16%2C 24.7%25 id in 1382 aa. Also highly similar to Y. pestis CDSs YPO1672 and YPO0765 gene gene309 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0309 YPO0310 YPO0310 ubiC ubiC 316696 317220 + putative chorismate--pyruvate lyase Similar to Escherichia coli chorismate--pyruvate lyase UbiC SW:UBIC_ECOLI (P26602) (164 aa) fasta scores: E(): 0%2C 55.7%25 id in 158 aa gene gene310 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0310 YPO0311 YPO0311 b4040 b4040 317386 318252 + 4-hydroxybenzoate octaprenyltransferase Similar to Escherichia coli 4-hydroxybenzoate octaprenyltransferase UbiA SW:UBIA_ECOLI (P26601) (290 aa) fasta scores: E(): 0%2C 73.3%25 id in 288 aa gene gene311 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0311 YPO0312 YPO0312 b4041 b4041 318433 320910 - glycerol-3-phosphate acyltransferase Similar to Escherichia coli glycerol-3-phosphate acyltransferase PlsB SW:PLSB_ECOLI (P00482) (806 aa) fasta scores: E(): 0%2C 80.2%25 id in 802 aa gene gene312 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0312 YPO0313 YPO0313 b4042 b4042 321038 321409 + diacylglycerol kinase Similar to Escherichia coli diacylglycerol kinase DgkA SW:KDGL_ECOLI (P00556) (121 aa) fasta scores: E(): 0%2C68.1%25 id in 119 aa gene gene313 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0313 YPO0314 YPO0314 b4043 b4043 321534 322142 + LexA repressor Similar to Escherichia coli repressor LexA SW:LEXA_ECOLI (P03033) (202 aa) fasta scores: E(): 0%2C 91.6%25 id in 202 aa gene gene314 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0314 YPO0315 YPO0315 YPO0315 322302 322811 - putative regulatory protein Similar to Escherichia coli zinc uptake regulation protein Zur SW:ZUR_ECOLI (P32692) (171 aa) fasta scores: E(): 0%2C 69.2%25 id in 169 aa gene gene315 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0315 YPO0316 YPO0316 YPO0316 323066 324103 + conserved hypothetical protein Similar to many proteins of unknown function e.g. Escherichia coli hypothetical protein YjbN SW:YJBN_ECOLI (P32695) (330 aa) fasta scores: E(): 0%2C 78.2%25 id in 316 aa. Note the possible alternative translational start site at codon 27 gene gene316 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0316 YPO0318 YPO0318 YPO0318 324619 324837 + putative exported protein Similar to Escherichia coli hypothetical protein YjbO SW:YJBO_ECOLI (P32696) (80 aa) fasta scores: E(): 1.7e-14%2C 58.3%25 id in 72 aa gene gene317 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0318 YPO0319 YPO0319 b4051 b4051 325182 326165 - quinone oxidoreductase Similar to Escherichia coli quinone oxidoreductase Qor SW:QOR_ECOLI (P28304) (327 aa) fasta scores: E(): 0%2C73.4%25 id in 327 aa gene gene318 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0319 YPO0320 YPO0320 b4052 b4052 326497 327903 + replicative DNA helicase Similar to Escherichia coli replicative DNA helicase DnaB SW:DNAB_ECOLI (P03005) (471 aa) fasta scores: E(): 0%2C84.9%25 id in 471 aa gene gene319 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0320 YPO0321 YPO0321 alr alr 328000 329079 + alanine racemase (biosynthetic) Similar to Escherichia coli biosynthetic alanine racemase Alr SW:ALR1_ECOLI (P29743) (359 aa) fasta scores: E(): 0%2C 72.1%25 id in 358 aa gene gene320 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0321 YPO0322 YPO0322 tyrB tyrB 329265 330458 + aromatic-amino-acid aminotransferase Similar to Escherichia coli aromatic-amino-acid aminotransferase TyrB SW:TYRB_ECOLI (P04693) (397 aa) fasta scores: E(): 0%2C 75.5%25 id in 396 aa gene gene321 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0322 YPO0323 YPO0323 YPO0323 330985 331344 + conserved hypothetical protein Similar to Escherichia coli hypothetical protein YjbR SW:YJBR_ECOLI (P32699) (118 aa) fasta scores: E(): 1.6e-27%2C 57.4%25 id in 115 aa gene gene322 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0323 YPO0324 YPO0324 b4058 b4058 331437 334280 - excinuclease ABC subunit A Similar to Escherichia coli excinuclease ABC subunit A UvrA SW:UVRA_ECOLI (P07671) (940 aa) fasta scores: E(): 0%2C 90.9%25 id in 940 aa gene gene323 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0324 YPO0325 YPO0325 exrB exrB 334738 335286 + single-strand binding protein Similar to Escherichia coli single-strand DNA-binding protein Ssb SW:SSB_ECOLI (P02339) (177 aa) fasta scores: E(): 0%2C 87.3%25 id in 181 aa gene gene324 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0325 YPO0326 YPO0326 YPO0326 335533 335847 - conserved hypothetical protein Similar to Escherichia coli hypothetical protein YiiL SW:YIIL_ECOLI (P32156) (104 aa) fasta scores: E(): 0%2C77.7%25 id in 103 aa gene gene325 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0326 YPO0327 YPO0327 YPO0327 335861 337009 - probable alcohol dehydrogenase Similar to Bacillus methanolicus NAD-dependent methanol dehydrogenase Mdh SW:MEDH_BACMT (P31005) (380 aa) fasta scores: E(): 0%2C 42.9%25 id in 378 aa and to Escherichia coli probable alcohol dehydrogenase YiaY SW:ADH2_ECOLI (P37686) (382 aa) fasta scores: E(): 0%2C 43.6%25 id in 376 aa gene gene326 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0327 YPO0328 YPO0328 b3902 b3902 337076 337900 - rhamnulose-1-phosphate aldolase Similar to Escherichia coli rhamnulose-1-phosphate aldolase RhaD SW:RHAD_ECOLI (P32169) (274 aa) fasta scores: E(): 0%2C 68.4%25 id in 272 aa gene gene327 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0328 YPO0329 YPO0329 b3903 b3903 337913 339169 - L-rhamnose isomerase Similar to Escherichia coli L-rhamnose isomerase RhaA SW:RHAA_ECOLI (P32170) (419 aa) fasta scores: E(): 0%2C85.2%25 id in 418 aa gene gene328 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0329 YPO0330 YPO0330 b3904 b3904 339166 340623 - rhamnulokinase Similar to Escherichia coli rhamnulokinase RhaB SW:RHAB_ECOLI (P32171) (489 aa) fasta scores: E(): 0%2C 62.9%25 id in 483 aa gene gene329 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0330 YPO0331 YPO0331 YPO0331 340646 340828 + hypothetical protein No significant database hits gene gene330 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0331 YPO0332 YPO0332 b3905 b3905 341050 341871 + L-rhamnose operon regulatory protein Similar to Escherichia coli L-rhamnose operon regulatory protein RhaS SW:RHAS_ECOLI (P09377) (278 aa) fasta scores: E(): 0%2C 60.0%25 id in 270 aa gene gene331 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0332 YPO0333 YPO0333 b3906 b3906 342004 342876 + L-rhamnose operon transcriptional activator Similar to Escherichia coli L-rhamnose operon transcriptional activator RhaR SW:RHAR_ECOLI (P09378) (312 aa) fasta scores: E(): 0%2C 54.0%25 id in 272 aa gene gene332 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0333 YPO0334 YPO0334 rhaT rhaT 343025 344059 - L-rhamnose-proton symport protein Similar to Escherichia coli L-rhamnose-proton symport protein RhaT SW:RHAT_ECOLI (P27125) (344 aa) fasta scores: E(): 0%2C 79.9%25 id in 343 aa gene gene333 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0334 YPO0335 YPO0335 YPO0335 344213 344479 + hypothetical protein Doubtful CDS with no significant database hits gene gene334 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0335 YPO0336 YPO0336 YPO0336 344490 344789 + insertion element protein (fragment) Gene remnant which is similar to Shigella dysenteriae insertion element protein InsB SW:ISBN_SHIDY (P03832) (131 aa) fasta scores: E(): 0%2C 84.7%25 id in 98 aa%3B~was marked partial mRNA gene335 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0336 YPO0337 YPO0337 YPO0337 344915 345340 - putative exported protein No significant database hits gene gene336 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0337 YPO0338 YPO0338 YPO0338 345570 345737 + hypothetical protein No significant database hits gene gene337 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0338 YPO0339 YPO0339 YPO0339 345752 348322 + enhancing factor (viral) Significantly similar to many viral enhancing proteins important for the invasion of the cells of the insect midgut e.g. Pseudalatia unipuncta granulosis virus (PuGV) viral enhancing factor Vef SW:VEF_GVPU (P41723) (901 aa) fasta scores: E(): 1.5e-20%2C 25.2%25 id in 869 aa and to Lymantria dispar multicapsid nuclear polyhedrosis virus enhancin TR:O37353 (EMBL:AF019970) (782 aa) fasta scores: E(): 1.2e-24%2C 24.5%25 id in 783 aa gene gene338 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0339 YPO0340 YPO0340 YPO0340 348349 348483 - transposase (fragment) Gene remnant which is similar to Escherichia coli transposase YdcA TR:Q9Z4D1 (EMBL:AB021078) (393 aa) fasta scores: E(): 2.4e-06%2C 51.1%25 id in 45 aa%3B~was marked partial mRNA gene339 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0340 YPO0341 YPO0341 YPO0341 348976 349551 - putative TetR-family regulatory protein Similar to Escherichia coli hypothetical protein YjdC SW:YJDC_ECOLI (P36656) (191 aa) fasta scores: E(): 0%2C64.4%25 id in 191 aa gene gene340 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0341 YPO0342 YPO0342 YPO0342 349971 351986 + putative oxidoreductase Similar over whole length to Escherichia coli AegA protein expressed in E. coli under anaerobic conditions SW:AEGA_ECOLI (P37127) (659 aa) fasta scores: E(): 0%2C 56.6%25 id in 670 aa. The C-terminal portion of the product of this CDS is similar to many glutamate synthases e.g. Escherichia coli glutamate synthase [NADPH] small chain GltD SW:GLTD_ECOLI (P09832) (471 aa) fasta scores: E(): 0%2C 68.9%25 id in 470 aa gene gene341 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0342 YPO0343 YPO0343 hydN hydN 352009 352566 + 4Fe-4S ferrodoxin Similar to Escherichia coli electron transport protein HydN SW:HYDN_ECOLI (P30132) (175 aa) fasta scores: E(): 0%2C 50.0%25 id in 176 aa gene gene342 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0343 YPO0344 YPO0344 b4079 b4079 352589 354736 + formate dehydrogenase H Similar to Escherichia coli formate dehydrogenase H%2CFdhF SW:FDHF_ECOLI (P07658) (715 aa) fasta scores: E(): 0%2C63.4%25 id in 715 aa. Interestingly%2C unlike in E. coli and Salmonella%2C the Yersinia fdhF gene lacks the opal UGA selenocysteine codon. gene gene343 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0344 YPO0345 YPO0345 cycZ cycZ 354798 356585 - thiol:disulfide interchange protein Similar to many including: Haemophilus influenzae thiol:disulfide interchange protein DsbD SW:DSBD_HAEIN (P44919) (579 aa) fasta scores: E(): 0%2C 47.1%25 id in 592 aa and Pantoea citrea thiol disulfide interchange protein DsbC TR:Q9XDB2 (EMBL:AF102175) (578 aa) fasta scores: E(): 0%2C61.1%25 id in 594 aa. Note the large overlap with the upstream CDS gene gene344 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0345 YPO0346 YPO0346 YPO0346 356561 356920 - putative cation tolerance protein Similar to Escherichia coli periplasmic divalent cation tolerance protein%2C CutA SW:CUTA_ECOLI (P36654) (112 aa) fasta scores: E(): 0%2C 73.2%25 id in 112 aa gene gene345 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0346 YPO0347 YPO0347 b4138 b4138 357105 358406 - anaerobic C4-dicarboxylate transporter Similar to Escherichia coli anaerobic C4-dicarboxylate transporter DcuA SW:DCUA_ECOLI (P04539) (433 aa) fasta scores: E(): 0%2C 85.0%25 id in 433 aa gene gene346 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0347 YPO0348 YPO0348 aspA aspA 358526 359962 - aspartate ammonia-lyase Similar to Escherichia coli aspartate ammonia-lyase AspA SW:ASPA_ECOLI (P04422) (478 aa) fasta scores: E(): 0%2C89.3%25 id in 478 aa gene gene347 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0348 YPO0349 YPO0349 YPO0349 360410 360988 + putative membrane protein Highly similar to Escherichia coli FxsA protein that suppresses F exclusion of bacteriophage T7 SW:FXSA_ECOLI (P37147) (158 aa) fasta scores: E(): 1.5e-29%2C 61.9%25 id in 176 aa gene gene348 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0349 YPO0350 YPO0350 crpB crpB 361243 361536 + 10 kDa chaperonin Similar to Yersinia enterocolitica 10 kDa chaperonin%2C GroES SW:CH10_YEREN (P48228) (97 aa) fasta scores: E(): 3.1e-32%2C 95.9%25 id in 97 aa gene gene349 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0350 YPO0351 YPO0351 crpA crpA 361583 363229 + 60 kDa chaperonin Similar to Yersinia enterocolitica 60 kDa chaperonin GroEL SW:CH60_YEREN (P48219) (550 aa) fasta scores: E(): 0%2C98.4%25 id in 550 aa gene gene350 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0351 YPO0352 YPO0352 YPO0352 363865 364251 + putative lipoprotein Similar to Escherichia coli hypothetical 13.1 kDa protein in mopA-efp intergenic region precursor YjeI SW:YJEI_ECOLI (P39278) (128 aa) fasta scores: E(): 1.6e-27%2C61.9%25 id in 126 aa gene gene351 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0352 YPO0353 YPO0353 YPO0353 364536 365564 - conserved hypothetical protein Similar to many proteins of undefined function e.g. Escherichia coli hypothetical protein YjeK SW:YJEK_ECOLI (P39280) (342 aa) fasta scores: E(): 0%2C 71.3%25 id in 341 aa. Also similar to several L-lysine 2%2C3-aminomutases e.g. from Clostridium subterminale KamA TR:Q9XBQ8 (EMBL:AF159146) (416 aa) fasta scores: E(): 0%2C 34.6%25 id in 324 aa gene gene352 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0353 YPO0354 YPO0354 b4147 b4147 365600 366166 + elongation factor P Similar to Escherichia coli elongation factor P EF-P SW:EFP_ECOLI (P33398) (187 aa) fasta scores: E(): 0%2C 90.9%25 id in 187 aa gene gene353 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0354 YPO0355 YPO0355 sugE sugE 366413 366727 + putative chaperone Similar to Citrobacter freundii SugE protein%2C a supressor of groEL SW:SUGE_CITFR (O69279) (105 aa) fasta scores: E(): 6e-27%2C 75.0%25 id in 104 aa and to Escherichia coli protein SugE SW:SUGE_ECOLI (P30743) (105 aa) fasta scores: E(): 4.7e-26%2C 76.0%25 id in 104 aa gene gene354 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0355 YPO0356 YPO0356 tnp tnp 366946 367404 - transposase for the IS1541 insertion element Similar to Salmonella typhimurium%2C and Salmonella typhi transposase for insertion sequence IS200 TnpA SW:T200_SALTY (Q57334) (152 aa) fasta scores: E(): 0%2C 94.1%25 id in 152 aa. Identical to the Yersinia pseudotuberculosis IS1541 element transposase Tnp TR:Q9X9F5 (EMBL:AJ238014) (152 aa) fasta scores: E(): 0%2C 100.0%25 id in 152 aa gene gene355 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0356 YPO0357 YPO0357 b4151 b4151 367602 367958 - fumarate reductase hydrophobic protein Similar to Escherichia coli fumarate reductase hydrophobic protein FrdD SW:FRDD_ECOLI (P03806) (119 aa) fasta scores: E(): 0%2C 85.6%25 id in 118 aa gene gene356 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0357 YPO0358 YPO0358 b4152 b4152 367975 368367 - fumarate reductase hydrophobic protein Similar to Escherichia coli fumarate reductase hydrophobic protein FrdC SW:FRDC_ECOLI (P03805) (131 aa) fasta scores: E(): 0%2C 72.1%25 id in 129 aa gene gene357 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0358 YPO0359 YPO0359 b4153 b4153 368384 369118 - fumarate reductase iron-sulfur protein Similar to Escherichia coli fumarate reductase iron-sulfur protein FrdB SW:FRDB_ECOLI (P00364) (243 aa) fasta scores: E(): 0%2C 85.5%25 id in 242 aa gene gene358 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0359 YPO0360 YPO0360 b4154 b4154 369111 370934 - fumarate reductase flavoprotein subunit Similar to Escherichia coli fumarate reductase flavoprotein subunit FrdA SW:FRDA_ECOLI (P00363) (601 aa) fasta scores: E(): 0%2C 85.3%25 id in 605 aa gene gene359 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0360 YPO0361 YPO0361 YPO0361 371041 371232 + putative membrane protein Doubtful CDS with no significant database hits. Note the low G+C content (29%25) gene gene360 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0361 YPO0362 YPO0362 b4155 b4155 371392 372369 + putative lysyl-tRNA synthetase Similar to lysyl-tRNA synthetases from Escherichia coli putative PoxA SW:SYK3_ECOLI (P03812) (325 aa) fasta scores: E(): 0%2C 84.0%25 id in 325 aa and to Vibrio cholerae vc2655 TR:Q9KNS6 (EMBL:AE004331) (349 aa) fasta scores: E(): 0%2C 63.4%25 id in 317 aa gene gene361 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0362 YPO0363 YPO0363 YPO0363 372490 375849 - putative membrane transport protein Similar to Escherichia coli potassium efflux system protein%2C KefA SW:KEFA_ECOLI (P77338) (1120 aa) fasta scores: E(): 0%2C 29.1%25 id in 1100 aa. Also similar to several proteins of undefined function e.g. Escherichia coli hypothetical 123.8 kDa protein in genX-psd intergenic region precursor YjeP SW:YJEP_ECOLI (P39285) (1107 aa) fasta scores: E(): 0%2C 68.1%25 id in 1105 aa gene gene362 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0363 YPO0364 YPO0364 psd psd 375873 376754 - phosphatidylserine decarboxylase proenzyme Similar to Haemophilus influenzae phosphatidylserine decarboxylase proenzyme Psd SW:DPSD_HAEIN (P43789) (290 aa) fasta scores: E(): 0%2C 58.9%25 id in 280 aa and to Escherichia coli phosphatidylserine decarboxylase proenzyme Psd SW:DPSD_ECOLI (P10740) (322 aa) fasta scores: E(): 0%2C 73.0%25 id in 293 aa gene gene363 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0364 YPO0365 YPO0365 YPO0365 377079 378131 - conserved hypothetical protein Similar to Escherichia coli hypothetical protein YjeQ SW:YJEQ_ECOLI (P39286) (350 aa) fasta scores: E(): 0%2C78.9%25 id in 351 aa gene gene364 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0365 YPO0366 YPO0366 b4162 b4162 378331 378876 + oligoribonuclease Similar to Escherichia coli oligoribonuclease Orn SW:ORN_ECOLI (P39287) (180 aa) fasta scores: E(): 0%2C 87.6%25 id in 177 aa gene gene365 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0366 YPO0367 YPO0367 YPO0367 379821 381056 - putative iron-sulfur cluster-binding protein Similar to several including: Vibrio cholerae iron-sulfur cluster-binding protein VC0342 TR:Q9KV16 (EMBL:AE004123) (369 aa) fasta scores: E(): 0%2C 58.7%25 id in 407 aa and Escherichia coli hypothetical protein YjeS or B4166 SW:YJES_ECOLI (P39288) (379 aa) fasta scores: E(): 0%2C74.7%25 id in 411 aa gene gene366 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0367 YPO0368 YPO0368 YPO0368 381055 382569 + conserved hypothetical protein Similar to many proteins of unknown function e.g. Escherichia coli hypothetical protein YjeF or B4167 SW:YJEF_ECOLI (P31806) (515 aa) fasta scores: E(): 0%2C 61.0%25 id in 502 aa gene gene367 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0368 YPO0369 YPO0369 YPO0369 382580 383050 + conserved hypothetical protein Similar to several proteins of undefined function e.g. Escherichia coli hypothetical protein YjeE or B4168 SW:YJEE_ECOLI (P31805) (153 aa) fasta scores: E(): 3.5e-41%2C73.026%25 id in 152 aa gene gene368 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0369 YPO0370 YPO0370 YPO0370 383190 384971 + putative N-acetylmuramoyl-L-alanine amidase-family protein Similar to Escherichia coli cell wall hydrolase: N-acetylmuramoyl-L-alanine amidase amiB precursor SW:AMIB_ECOLI (P26365) (445 aa) fasta scores: E(): 4e-86%2C61.247%25 id in 449 aa. Also similar to Vibrio cholerae N-acetylmuramoyl-L-alanine amidase vc0344 TR:Q9KV14 (EMBL:AE004123) (581 aa) fasta scores: E(): 2.5e-41%2C37.605%25 id in 593 aa. Note that like the Vibrio cholerae hit the Y. pestis predicted product also possesses an additional LysM domain which may be involved in peptidoglycan binding. gene gene369 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0370 YPO0371 YPO0371 b4170 b4170 384987 386894 + DNA mismatch repair protein Similar to Escherichia coli DNA mismatch repair protein MutL SW:MUTL_ECOLI (P23367) (615 aa) fasta scores: E(): 0%2C 65.0%25 id in 637 aa gene gene370 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0371 YPO0372 YPO0372 b4171 b4171 386887 387828 + tRNA delta(2)-isopentenylpyrophosphate transferase Similar to Escherichia coli%2C and Shigella flexneri tRNA delta(2)-isopentenylpyrophosphate transferase MiaA SW:MIAA_ECOLI (P16384) (316 aa) fasta scores: E(): 0%2C 80.2%25 id in 313 aa gene gene371 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0372 YPO0373 YPO0373 ymr ymr 387944 388249 + yersinia multiple regulator Similar to many regulatory proteins including: Yersinia enterocolitica multiple regulator Ymr TR:Q56928 (EMBL:D28762) (101 aa) fasta scores: E(): 0%2C 99.0%25 id in 101 aa and to Erwinia carotovora bacteriocin gene regulator TR:Q9ZI76 (EMBL:AF039142) (99 aa) fasta scores: E(): 5.2e-32%2C 88.1%25 id in 101 aa and to Escherichia coli host factor-I protein Hfq SW:HFQ_ECOLI (P25521) (101 aa) fasta scores: E(): 1.7e-28%2C 80.2%25 id in 101 aa gene gene372 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0373 YPO0374 YPO0374 hflX hflX 388348 389634 + GTP-binding protein Similar to Escherichia coli GTP-binding protein which lies within the high frequency of lysogenization locus governing the stability of the lambda cII protein%2CHflX SW:HFLX_ECOLI (P25519) (426 aa) fasta scores: E(): 0%2C84.7%25 id in 425 aa gene gene373 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0374 YPO0375 YPO0375 hflA hflA 389875 391134 + putative membrane protein Similar to Escherichia coli HflK protein which lies within the high frequency of lysogenization locus governing the stability of the lambda cII protein SW:HFLK_ECOLI (P25662) (419 aa) fasta scores: E(): 0%2C 80.5%25 id in 420 aa gene gene374 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0375 YPO0376 YPO0376 hflA hflA 391138 392142 + putative membrane protein Similar to Escherichia coli HflC protein which lies within the high frequency of lysogenization locus governing the stability of the lambda cII protein SW:HFLC_ECOLI (P25661) (334 aa) fasta scores: E(): 0%2C 81.7%25 id in 334 aa gene gene375 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0376 YPO0377 YPO0377 YPO0377 392314 392514 + putative membrane protein Similar to several proteins of unknown function including: Escherichia coli hypothetical 7.2 kDa protein in hflC-purA intergenic region YjeT SW:YJET_ECOLI (P39289) (65 aa) fasta scores: E(): 3.7e-20%2C 81.538%25 id in 65 aa and Escherichia coli O157:H7 hypothetical 7.2 kDa protein ecs5152 TR:BAB38575 (EMBL:AP002568) (65 aa) fasta scores: E(): 3.7e-20%2C 81.538%25 id in 65 aa gene gene376 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0377 YPO0378 YPO0378 adeK adeK 392614 393912 + adenylosuccinate synthetase Similar to Escherichia coli adenylosuccinate synthetase PurA SW:PURA_ECOLI (P12283) (431 aa) fasta scores: E(): 0%2C 88.6%25 id in 431 aa%2C and to Edwardsiella ictaluri adenylosuccinate synthetase PurA SW:PURA_EDWIC (O31047) (431 aa) fasta scores: E(): 0%2C 85.4%25 id in 431 aa gene gene377 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0378 YPO0379 YPO0379 YPO0379 394281 394706 + conserved hypothetical protein Similar to Escherichia coli and Shigella flexneri hypothetical protein YjeB SW:YJEB_ECOLI (P21498) (141 aa) fasta scores: E(): 0%2C 84.4%25 id in 141 aa%2C and to Vibrio parahaemolyticus hypothetical protein YjeB SW:YJEB_VIBPA (P40610) (141 aa) fasta scores: E(): 1.4e-31%2C 61.6%25 id in 138 aa gene gene378 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0379 YPO0380 YPO0380 rnr rnr 394947 397481 + ribonuclease R Similar to Escherichia coli ribonuclease R Rnr SW:RNR_ECOLI (P21499) (813 aa) fasta scores: E(): 0%2C77.936%25 id in 843 aa%2C and to Shigella flexneri ribonuclease R Rnr SW:RNR_SHIFL (P30851) (770 aa) fasta scores: E(): 0%2C78.994%25 id in 795 aa gene gene379 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0380 YPO0381 YPO0381 YPO0381 397600 398340 + putative methylase Similar to Escherichia coli hypothetical tRNA/rRNA methyltransferase YjfH SW:YJFH_ECOLI (P39290) (243 aa) fasta scores: E(): 0%2C 81.8%25 id in 242 aa%2C and to Haemophilus influenzae hypothetical tRNA/rRNA methyltransferase HI0860 SW:YJFH_HAEIN (P44906) (246 aa) fasta scores: E(): 0%2C 70.4%25 id in 243 aa gene gene380 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0381 YPO0383 YPO0383 aidB aidB 398748 400391 + putative acyl-CoA dehydrogenase Similar to Escherichia coli probable CoA dehydrogenase protein AidB SW:AIDB_ECOLI (P33224) (546 aa) fasta scores: E(): 0%2C 69.5%25 id in 541 aa%2C and to Pseudomonas aeruginosa probable acyl-CoA dehydrogenase PA3972 TR:AAG07359 (EMBL:AE004815) (549 aa) fasta scores: E(): 0%2C 44.8%25 id in 542 aa. Possible alternative translational start site gene gene381 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0383 YPO0384 YPO0384 YPO0384 400463 400774 - putative lipoprotein Similar to Escherichia coli hypothetical lipoprotein YjfO SW:YJFO_ECOLI (P39297) (142 aa) fasta scores: E(): 1.8e-13%2C 43.5%25 id in 108 aa gene gene382 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0384 YPO0385 YPO0385 ypmt1.57c ypmt1.57c 401114 401896 - insertion sequence IS100%2C ATP-binding protein Similar to Escherichia coli insertion sequence IS21 putative ATP-binding protein%2C IstB SW:ISTB_ECOLI (P15026) (265 aa) fasta scores: E(): 0%2C 47.4%25 id in 249 aa. Also almost identical to Yersinia pestis and Escherichia coli putative IS100 transposase ypmt1.57c TR:Q9R3L5 (EMBL:AL117211) (260 aa) fasta scores: E(): 0%2C 99.6%25 id in 260 aa. gene gene383 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0385 YPO0386 YPO0386 y1093 y1093 401893 402915 - transposase for insertion sequence IS100 Similar to Escherichia coli transposase for insertion sequence element IS21 IstA SW:ISTA_ECOLI (P15025) (390 aa) fasta scores: E(): 3e-27%2C 33.1%25 id in 329 aa. Identical to the previously sequenced Yersinia pestis%2CYersinia pseudotuberculosis%2C and Escherichia coli pesticin plasmid insertion sequence transposase Y1055 TR:P74993 (EMBL:U59875) (340 aa) fasta scores: E(): 0%2C 100.0%25 id in 340 aa gene gene384 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0386 YPO0387 YPO0387 YPO0387 403049 405112 + hypothetical protein C-terminal region is similar to the C-terminus of Escherichia coli 5-methylcytosine-specific restriction enzyme B McrB SW:MCRB_ECOLI (P15005) (459 aa) fasta scores: E(): 9.5e-12%2C 36.0%25 id in 211 aa. Internal region of the CDS is similar to the C-terminus of Deinococcus radiodurans McrB-related protein DRB0143 TR:Q9RZI5 (EMBL:AE001826) (969 aa) fasta scores: E(): 6.4e-30%2C 35.5%25 id in 498 aa. Possible gene remnant gene gene385 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0387 YPO0388 YPO0388 YPO0388 405109 406425 + conserved hypothetical protein Similar to Deinococcus radiodurans hypothetical protein DRB0144 TR:Q9RZI4 (EMBL:AE001826) (442 aa) fasta scores: E(): 7.1e-30%2C 30.4%25 id in 395 aa%2C and to Campylobacter jejuni hypothetical protein CJ0140 TR:Q9PIY7 (EMBL:AL139074) (443 aa) fasta scores: E(): 2.9e-21%2C 28.8%25 id in 382 aa gene gene386 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0388 YPO0389 YPO0389 YPO0389 406492 406722 + hypothetical protein Doubtful CDS. No significant database hits gene gene387 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0389 YPO0390 YPO0390 YPO0390 406969 407436 + hypothetical protein No significant database hits to the full length CDS. Similar to an internal region of Rhizobium sp insertion element ISR1 hypothetical protein A SW:YIA_RHISP (P17986) (278 aa) fasta scores: E(): 0.033%2C 37.2%25 id in 86 aa gene gene388 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0390 YPO0391 YPO0391 YPO0391 407449 408774 + modification methylase Similar to Micrococcus varians modification methylase MvaI SW:MTMV_MICVA (P14244) (454 aa) fasta scores: E(): 0%2C 29.6%25 id in 456 aa%2C and to Pyrococcus sp GI-H PspGI restriction-modification system methylase TR:O93645 (EMBL:AF067805) (433 aa) fasta scores: E(): 1.6e-21%2C 30.3%25 id in 458 aa gene gene389 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0391 YPO0392 YPO0392 YPO0392 408824 409546 + hypothetical protein Similar to N-terminal regions of Neisseria meningitidis hypothetical protein NMA0428 TR:Q9JWD7 (EMBL:AL162753) (548 aa) fasta scores: E(): 6.4e-07%2C 27.7%25 id in 260 aa%2C and to Campylobacter jejuni Hsp90 family heat shock protein HtpG TR:Q9PHZ3 (EMBL:AL139075) (608 aa) fasta scores: E(): 0.23%2C 25.1%25 id in 251 aa gene gene390 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0392 YPO0393 YPO0393 YPO0393 409656 410891 + hypothetical protein Poor database hits%2C similar to internal regions of Caenorhabditis elegans hypothetical protein ZC53.4 TR:Q23371 (EMBL:U47144) (1410 aa) fasta scores: E(): 1.3%2C21.6%25 id in 375 aa%2C and Ureaplasma parvum hypothetical protein UU293 TR:Q9PQJ8 (EMBL:AE002126) (1447 aa) fasta scores: E(): 4.8%2C 21.4%25 id in 415 aa gene gene391 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0393 YPO0394 YPO0394 YPO0394 411235 411522 - hypothetical protein No significant database hits gene gene392 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0394 YPO0395 YPO0395 YPO0395 411962 412054 + transposase (partial) Probable gene remnant. Similar to N-terminal region of Yersinia pestis probable transposase remnant protein YPCD1.03C TR:Q9RI27 (EMBL:AL117189) (83 aa) fasta scores: E(): 2.5e-09%2C 96.0%25 id in 25 aa%2C and to Escherichia coli transposase IS21 TR:O82915 (EMBL:AB011549) (136 aa) fasta scores: E(): 4.9e-09%2C 92.0%25 id in 25 aa%3B~was marked partial gene gene393 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0395 YPO0396 YPO0396 YPO0396 412139 413551 + hypothetical protein Similar to C-terminal regions of Xylella fastidiosa hypothetical protein XF2734 TR:Q9P9Y6 (EMBL:AE004080) (1144 aa) fasta scores: E(): 0.00014%2C 24.4%25 id in 468 aa%2C and Aeropyrum pernix hypothetical protein APE0110 TR:Q9YFZ1 (EMBL:AP000058) (919 aa) fasta scores: E(): 0.048%2C 23.2%25 id in 452 aa. Contains coil-coiled domain at approx. residues 68 to 97 gene gene394 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0396 YPO0397 YPO0397 YPO0397 413548 414702 + hypothetical protein Weak database hits to the full length CDS. Similar to Xylella fastidiosa hypothetical protein XF2735 TR:Q9P9Y5 (EMBL:AE004080) (401 aa) fasta scores: E(): 8.3e-09%2C 27.8%25 id in 389 aa gene gene395 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0397 YPO0398 YPO0398 YPO0398 414848 415894 - M48 peptidase family protein Similar to Deinococcus radiodurans conserved hypothetical protein DR0190 TR:Q9RXW5 (EMBL:AE001881) (402 aa) fasta scores: E(): 1.2e-07%2C 26.6%25 id in 379 aa. C-terminal region is similar to the N-terminus of Myxococcus xanthus hypothetical protein TR:O30615 (EMBL:AF013216) (478 aa) fasta scores: E(): 4.6e-07%2C 23.7%25 id in 253 aa gene gene396 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0398 YPO0399 YPO0399 YPO0399 415905 417101 - putative membrane protein Similar to Escherichia coli hypothetical protein YjgN SW:YJGN_ECOLI (P39338) (393 aa) fasta scores: E(): 2.5e-30%2C 30.9%25 id in 379 aa%2C and to Salmonella typhimurium hypothetical protein YjgN SW:YJGN_SALTY (Q08022) (314 aa) fasta scores: E(): 1.8e-26%2C 30.7%25 id in 316 aa. S. typhimurium protein appears to be truncated at the C-terminus in comparison to E. coli and Y. pestis proteins gene gene397 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0399 YPO0400 YPO0400 YPO0400 417807 418343 + hypothetical protein No significant database hits gene gene398 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0400 YPO0401 YPO0401 YPO0401 418345 419220 + putative transcriptional regulator Similar to Salmonella typhimurium regulatory protein PocR SW:POCR_SALTY (Q05587) (303 aa) fasta scores: E(): 2.8e-09%2C 38.4%25 id in 112 aa and to Escherichia coli hypothetical transcriptional regulator YioO SW:YIJO_ECOLI (P32677) (283 aa) fasta scores: E(): 0%2C 53.9%25 id in 280 aa gene gene399 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0401 YPO0402 YPO0402 YPO0402 419213 419557 - PTS system%2C IIB component Similar to many carbohydrate phosphotransferase system IIB components e.g. Escherichia coli PTS system%2Cfructose-like-2 IIB component 2 FrwD SW:PTWX_ECOLI (P32676) (113 aa) fasta scores: E(): 3.2e-23%2C 52.7%25 id in 110 aa gene gene400 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0402 YPO0403 YPO0403 YPO0403 419650 419970 - PTS system%2C IIB component Similar to many carbohydrate phosphotransferase IIB components e.g. Escherichia coli PTS system%2Cfructose-like-2 IIB component 1 FrwB%2C SW:PTWB_ECOLI (P32673) (106 aa) fasta scores: E(): 0%2C 82.7%25 id in 104 aa. Similar to part of Rhodobacter capsulatus PTS system%2Cfructose-specific IIBC component FruA SW:PTFB_RHOCA (P23387) (578 aa) fasta scores: E(): 6.3e-16%2C 47.4%25 id in 97 aa and to Escherichia coli PTS system%2C fructose-specific IIBC component FruA%2C PtsF%2C SW:PTFB_ECOLI (P20966) (563 aa) fasta scores: E(): 1e-15%2C 49.5%25 id in 97 aa gene gene401 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0403 YPO0404 YPO0404 YPO0404 420311 421396 - PTS system%2C IIC component Similar to many carbohydrate phosphotransferase IIC components e.g. part of Escherichia coli PTS system%2Cfructose-specific IIBC component FruA SW:PTFB_ECOLI (P20966) (563 aa) fasta scores: E(): 0%2C 40.7%25 id in 329 aa and to Escherichia coli PTS system%2C fructose-like-2 IIC component FrwC SW:PTWC_ECOLI (P32672) (359 aa) fasta scores: E(): 0%2C 76.5%25 id in 358 aa gene gene402 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0404 YPO0405 YPO0405 YPO0405 421758 424316 + putative phosphoenolpyruvate-protein phosphotransferase Similar to e.g. Escherichia coli phosphoenolpyruvate-protein phosphotransferase PtsI%2CSW:PT1_ECOLI (P08839) (575 aa) fasta scores: E(): 0%2C 36.0%25 id in 583 aa%2C but has both N- and C-terminal extensions. Also similar to Escherichia coli phosphoenolpyruvate-protein phosphotransferase PtsA%2CSW:PT1A_ECOLI (P32670) (711 aa) fasta scores: E(): 0%2C 64.5%25 id in 726 aa and to Escherichia coli putative phosphoenolpyruvate-protein phosphotransferase YpdD%2CSW:YPDD_ECOLI (P77439) (831 aa) fasta scores: E(): 0%2C 41.5%25 id in 853 aa gene gene403 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0405 YPO0406 YPO0406 YPO0406 424378 424869 - putative exported protein Similar to Escherichia coli hypothetical protein YjjA SW:YJJA_ECOLI (P18390) (165 aa) fasta scores: E(): 4.3e-21%2C 45.6%25 id in 158 aa gene gene404 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0406 YPO0407 YPO0407 YPO0407 425170 425460 - conserved hypothetical protein Similar to e.g. Escherichia coli hypothetical protein YneC SW:YNEC_ECOLI (P76144) (96 aa) fasta scores: E(): 2.6e-30%2C 75.0%25 id in 96 aa and to Pseudomonas aeruginosa hypothetical protein PA0709 TR:AAG04098 (EMBL:AE004506) (98 aa) fasta scores: E(): 1.5e-05%2C 40.2%25 id in 87 aa gene gene405 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0407 YPO0408 YPO0408 YPO0408 425524 426399 - putative aldolase Similar to many putative aldolases e.g. Escherichia coli putative aldolase YneB%2C SW:YNEB_ECOLI (P76143) (291 aa) fasta scores: E(): 0%2C 83.8%25 id in 290 aa gene gene406 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0408 YPO0409 YPO0409 YPO0409 426455 427474 - putative periplasmic solute-binding protein Similar to many ABC transport binding proteins e.g. Escherichia coli D-allose-binding periplasmic protein precursor AlsB SW:ALSB_ECOLI (P39265) (311 aa) fasta scores: E(): 3.4e-06%2C 24.4%25 id in 299 aa and to Escherichia coli hypothetical protein TR:P76142 (EMBL:AE000249) (340 aa) fasta scores: E(): 0%2C 84.4%25 id in 340 aa gene gene407 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0409 YPO0410 YPO0410 YPO0410 427540 428541 - putative ABC transporter permease protein Similar to many ABC transporter permeases e.g. Bacillus subtilis ribose transport system permease protein RbsC SW:RBSC_BACSU (P36948) (323 aa) fasta scores: E(): 7.1e-26%2C 32.7%25 id in 300 aa and to Escherichia coli hypothetical ABC transporter permease protein YdeZ SW:YDEZ_ECOLI (P77651) (330 aa) fasta scores: E(): 0%2C 81.3%25 id in 321 aa gene gene408 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0410 YPO0411 YPO0411 YPO0411 428538 429593 - putative ABC transporter permease protein Similar to many ABC transporter permeases e.g. Escherichia coli ribose transport system permease protein RbsC SW:RBSC_ECOLI (P04984) (321 aa) fasta scores: E(): 2.3e-25%2C 33.2%25 id in 307 aa and to Escherichia coli hypothetical ABC transporter permease protein YdeY SW:YDEY_ECOLI (P77672) (342 aa) fasta scores: E(): 0%2C 75.7%25 id in 350 aa gene gene409 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0411 YPO0412 YPO0412 YPO0412 429587 431170 - putative ABC transporter ATP-binding protein Similar to many ABC transporter ATP-binding proteins e.g. Escherichia coli putative ABC transporter ATP-binding protein Ego SW:EGO_ECOLI (P77257) (511 aa) fasta scores: E(): 0%2C 66.0%25 id in 497 aa and to Bacillus stearothermophilus L-arabinose transport%2C ATP binding protein AraG TR:Q9S472 (EMBL:AF160811) (513 aa) fasta scores: E(): 0%2C 35.7%25 id in 507 aa gene gene410 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0412 YPO0413 YPO0413 YPO0413 431280 431591 - putative membrane protein Doubtfull CDS. No significant database matches gene gene411 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0413 YPO0414 YPO0414 YPO0414 431515 432502 + putative transcriptional regulator (pseudogene) Similar to Bacillus subtilis deoxyribonucleoside regulator DeoR SW:DEOR_BACSU (P39140) (313 aa) fasta scores: E(): 5.9e-18%2C 29.936%25 id in 314 aa%2C and to Escherichia coli hypothetical transcriptional regulator in hipB-uxaB intergenic region YdeW SW:YDEW_ECOLI (P76141) (317 aa) fasta scores: E(): 1.7e-78%2C 66.997%25 id in 303 aa. There is a frameshift around codon 73. The sequence has been checked and is believed to be correct pseudogene gene412 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0414 YPO0415 YPO0415 YPO0415 432673 434265 + putative carbohydrate kinase Similar to carbohydrate kinases e.g. Bacillus subtilis gluconokinase GntK%2C SW:GNTK_BACSU (P12011) (513 aa) fasta scores: E(): 1.2e-26%2C 26.250%25 id in 480 aa and Escherichia coli hypothetical sugar kinase YdeV%2CSW:YDEV_ECOLI (P77432) (530 aa) fasta scores: E(): 2.7e-181%2C 78.302%25 id in 530 aa gene gene413 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0415 YPO0416 YPO0416 YPO0416 434734 435774 + putative lipopolysaccharide core biosynthesis protein Similar to Escherichia coli lipopolysaccharide core biosynthesis protein RfaQ or WaaQ SW:RFAQ_ECOLI (P25742) (344 aa) fasta scores: E(): 2.3e-45%2C 40.356%25 id in 337 aa and to Salmonella typhimurium lipopolysaccharide core biosynthesis protein RfaQ or WaaQ TR:O68270 (EMBL:AF026386) (344 aa) fasta scores: E(): 3.8e-46%2C 41.246%25 id in 337 aa gene gene414 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0416 YPO0417 YPO0417 YPO0417 435822 437054 + putative O-antigen biosynthesis protein Shows weak similarity to Salmonella typhimurium O-antigen ligase RfaL SW:RFAL_SALTY (P26471) (404 aa) fasta scores: E(): 0.0056%2C 24.796%25 id in 367 aa. Similar to other putative O-antigen biosynthesis genes e.g. Haemophilus influenzae hypothetical protein HI0874 SW:Y874_HAEIN (P44067) (399 aa) fasta scores: E(): 7.4e-06%2C 25.369%25 id in 406 aa gene gene415 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0417 YPO0418 YPO0418 YPO0418 437640 437837 + putative membrane protein Similar to the N-terminal region of Arabidopsis thaliana putative ring zinc finger protein At2g42350 TR:Q9SLC4 (EMBL:AC005956) (217 aa) fasta scores: E(): 5.9%2C28.814%25 id in 59 aa gene gene416 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0418 YPO0419 YPO0419 YPO0419 437864 438097 + putative exported protein Similar to the C-terminal regions of Malawimonas jakobiformis ABC transporter channel subunit YejV TR:Q9G873 (EMBL:AF295546) (218 aa) fasta scores: E(): 3%2C 32.857%25 id in 70 aa%2C and to Albinaria coerulea NADH-ubiquinone oxidoreductase chain 6 Nd6 SW:NU6M_ALBCO (P48922) (155 aa) fasta scores: E(): 3.3%2C 27.397%25 id in 73 aa gene gene417 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0419 YPO0420 YPO0420 YPO0420 438149 439231 + putative lipoprotein Similar to Vibrio cholerae putative multidrug resistance protein Vc1675 TR:Q9KRG7 (EMBL:AE004245) (343 aa) fasta scores: E(): 1.2e-22%2C 30.919%25 id in 359 aa%2C and to Pseudomonas aeruginosa probable Rnd efflux membrane fusion protein precursor Pa4374 TR:Q9HW28 (EMBL:AE004853) (376 aa) fasta scores: E(): 2.1e-13%2C 28.086%25 id in 324 aa gene gene418 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0420 YPO0421 YPO0421 YPO0421 439231 442317 + putative multi-drug efflux protein Similar to Vibrio cholerae transporter%2C AcrB/D/F family Vc1757 TR:Q9KR85 (EMBL:AE004253) (1016 aa) fasta scores: E(): 4.3e-157%2C 40.766%25 id in 1018 aa%2C and to Xylella fastidiosa cation efflux system protein Xf2083 TR:Q9PBQ7 (EMBL:AE004023) (1020 aa) fasta scores: E(): 2.1e-106%2C 30.731%25 id in 999 aa gene gene419 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0421 YPO0422 YPO0422 YPO0422 442678 443010 - hypothetical protein No significant database hits gene gene420 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0422 YPO0423 YPO0423 YPO0423 443157 443504 - hypothetical protein Similar to the C-terminal region of Schizosaccharomyces pombe hypothetical protein C23E6.01 in chromosome II SPBC23E6.01 TR:O60176 (EMBL:AL023287) (240 aa) fasta scores: E(): 4%2C 32.258%25 id in 93 aa gene gene421 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0423 YPO0424 YPO0424 YPO0424 443813 444898 + putative pectinesterase Similar to Erwinia chrysanthemi pectinesterase A PemA SW:PMEA_ERWCH (P07863) (366 aa) fasta scores: E(): 4.6e-79%2C 55.249%25 id in 362 aa%2C and to Burkholderia solanacearum pectinesterase Pme SW:PME_BURSO (P24791) (396 aa) fasta scores: E(): 9.3e-16%2C 30.321%25 id in 343 aa gene gene422 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0424 YPO0425 YPO0425 hmsT hmsT 445439 446611 - HmsT protein Identical to the previously sequenced Yersinia pestis HmsT protein TR:Q9X5X6 (EMBL:AF129277) (390 aa) fasta scores: E(): 4.6e-148%2C 100.000%25 id in 390 aa. HmsT has been shown to be essential for the expression of the hemin storage (Hms+) phenotype gene gene423 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0425 YPO0426 YPO0426 YPO0426 446953 447192 + putative membrane protein Similar to Escherichia coli hypothetical 8.7 kDa protein in fhuF-leuV intergenic region YjjZ or B4367.1 SW:YJJZ_ECOLI (P55914) (78 aa) fasta scores: E(): 1.5e-11%2C49.333%25 id in 75 aa gene gene424 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0426 YPO0427 YPO0427 b4371 b4371 447705 448748 - ribosomal RNA small subunit methyltransferase C Similar to Escherichia coli ribosomal RNA small subunit methyltransferase C RsmC SW:RSMC_ECOLI (P39406) (342 aa) fasta scores: E(): 0%2C 69.1%25 id in 340 aa%2C and to Haemophilus influenzae ribosomal RNA small subunit methyltransferase C RsmC SW:RSMC_HAEIN (P44453) (330 aa) fasta scores: E(): 0%2C 45.5%25 id in 330 aa gene gene425 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0427 YPO0428 YPO0428 b4372 b4372 448861 449298 + DNA polymerase III%2C psi subunit Similar to Escherichia coli DNA polymerase III%2C psi subunit HolD SW:HOLD_ECOLI (P28632) (137 aa) fasta scores: E(): 2.1e-30%2C 59.701%25 id in 134 aa%2C and to Haemophilus influenzae DNA polymerase III%2C psi subunit HolD or Hi0011 SW:HOLD_HAEIN (P43750) (134 aa) fasta scores: E(): 1.5e-10%2C38.168%25 id in 131 aa gene gene426 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0428 YPO0429 YPO0429 b4373 b4373 449243 449686 + ribosomal-protein-alanine acetyltransferase Similar to Escherichia coli ribosomal-protein-alanine acetyltransferase RimI or B4373 SW:RIMI_ECOLI (P09453) (148 aa) fasta scores: E(): 7.7e-44%2C72.109%25 id in 147 aa%2C and to Haemophilus influenzae ribosomal-protein-alanine acetyltransferase RimI or Hi0010 SW:RIMI_HAEIN (P44305) (146 aa) fasta scores: E(): 8.1e-28%2C54.861%25 id in 144 aa. Note the large overlap with the upstream CDS. gene gene427 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0429 YPO0430 YPO0430 b4375 b4375 449865 451454 + peptide chain release factor 3 Similar to Escherichia coli peptide chain release factor 3 PrfC SW:RF3_ECOLI (P33998) (528 aa) fasta scores: E(): 0%2C 89.4%25 id in 526 aa%2C and to Salmonella typhimurium peptide chain release factor 3 PrfC SW:RF3_SALTY (Q56121) (528 aa) fasta scores: E(): 0%2C 90.1%25 id in 526 aa gene gene428 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0430 YPO0431 YPO0431 b4376 b4376 451781 452395 + osmotically inducible protein Y Similar to Escherichia coli osmotically inducible protein Y OsmY SW:OSMY_ECOLI (P27291) (201 aa) fasta scores: E(): 0%2C 64.0%25 id in 203 aa gene gene429 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0431 YPO0432 YPO0432 YPO0432 452562 452723 + putative exported protein Similar to Pseudomonas aeruginosa hypothetical protein Pa5482 TR:AAG08867 (EMBL:AE004961) (53 aa) fasta scores: E(): 1.6e-08%2C 55.8%25 id in 52 aa gene gene430 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0432 YPO0433 YPO0433 YPO0433 452797 454068 + conserved hypothetical protein Similar to Escherichia coli hypothetical protein YjjU SW:YJJU_ECOLI (P39407) (357 aa) fasta scores: E(): 0%2C63.5%25 id in 348 aa%2C and to Vibrio cholerae hypothetical protein VC2009 TR:Q9KQI9 (EMBL:AE004275) (389 aa) fasta scores: E(): 7.2e-26%2C 33.3%25 id in 363 aa gene gene431 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0433 YPO0434 YPO0434 YPO0434 454105 454893 + putative metalloenzyme Similar to Escherichia coli putative deoxyribonuclease YjjV SW:YJJV_ECOLI (P39408) (259 aa) fasta scores: E(): 6.7e-67%2C 64.314%25 id in 255 aa%2C and to Pasteurella multocida hypothetical protein PM0942 TR:Q9CM93 (EMBL:AE006134) (263 aa) fasta scores: E(): 7.7e-42%2C48.302%25 id in 265 aa gene gene432 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0434 YPO0435 YPO0435 YPO0435 455428 456699 + putative Na+ dependent nucleoside transporter-family protein Similar to Vibrio cholerae NupC family protein Vc2352 TR:Q9KPL5 (EMBL:AE004305) (418 aa) fasta scores: E(): 2.1e-119%2C 72.340%25 id in 423 aa%2C and to Helicobacter pylori J99 putative nucleoside transporter Jhp1106 TR:Q9ZK36 (EMBL:AE001538) (418 aa) fasta scores: E(): 2.7e-74%2C 57.346%25 id in 422 aa gene gene433 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0435 YPO0436 YPO0436 deoC deoC 457275 458072 + deoxyribose-phosphate aldolase Similar to Escherichia coli deoxyribose-phosphate aldolase DeoC B4381 SW:DEOC_ECOLI (P00882) (259 aa) fasta scores: E(): 6e-84%2C 78.491%25 id in 265 aa%2C and to Vibrio cholerae deoxyribose-phosphate aldolase Vc2350 TR:Q9KPL7 (EMBL:AE004305) (259 aa) fasta scores: E(): 8.3e-76%2C75.934%25 id in 241 aa gene gene434 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0436 YPO0437 YPO0437 deoA deoA 458193 459511 + thymidine phosphorylase (pseudogene) Similar to Escherichia coli thymidine phosphorylase DeoA SW:TYPH_ECOLI (P07650) (440 aa) fasta scores: E(): 1.3e-147%2C 82.955%25 id in 440 aa%2C and to Bacillus halodurans pyrimidine-nucleoside phosphorylase Pdp TR:Q9KCN6 (EMBL:AP001512) (433 aa) fasta scores: E(): 1.5e-61%2C41.570%25 id in 433 aa. There is a frameshift around codon 146. The sequence has been checked and is believed to be correct pseudogene gene435 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0437 YPO0439 YPO0439 b4383 b4383 459643 460866 + phosphopentomutase Similar to Escherichia coli phosphopentomutase DeoB SW:DEOB_ECOLI (P07651) (407 aa) fasta scores: E(): 0%2C 86.0%25 id in 407 aa%2C and to Vibrio cholerae phosphopentomutase Vc2348 TR:Q9KPL9 (EMBL:AE004305) (406 aa) fasta scores: E(): 0%2C 77.0%25 id in 408 aa gene gene436 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0439 YPO0440 YPO0440 b4384 b4384 460991 461710 + purine nucleoside phosphorylase Similar to Escherichia coli purine nucleoside phosphorylase DeoD SW:DEOD_ECOLI (P09743) (238 aa) fasta scores: E(): 0%2C 91.1%25 id in 236 aa%2C and to Klebsiella pneumoniae purine nucleoside phosphorylase DeoD SW:DEOD_KLEPN (Q59482) (239 aa) fasta scores: E(): 0%2C 88.7%25 id in 238 aa gene gene437 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0440 YPO0441 YPO0441 smp smp 461822 462523 - putative membrane protein Similar to Escherichia coli hypothetical protein Smp SW:SMP_ECOLI (P18838) (214 aa) fasta scores: E(): 0%2C 65.7%25 id in 213 aa gene gene438 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0441 YPO0442 YPO0442 b4388 b4388 462755 463735 + phosphoserine phosphatase Similar to Escherichia coli phosphoserine phosphatase SerB SW:SERB_ECOLI (P06862) (322 aa) fasta scores: E(): 0%2C 75.0%25 id in 320 aa%2C and to Haemophilus influenzae phosphoserine phosphatase SerB SW:SERB_HAEIN (P44997) (314 aa) fasta scores: E(): 0%2C 51.0%25 id in 304 aa gene gene439 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0442 YPO0443 YPO0443 b4389 b4389 463823 465205 + DNA repair protein RadA Similar to Escherichia coli DNA repair protein RadA SW:RADA_ECOLI (P24554) (460 aa) fasta scores: E(): 0%2C 91.1%25 id in 460 aa%2C and to Haemophilus influenzae DNA repair protein RadA SW:RADA_HAEIN (P45266) (458 aa) fasta scores: E(): 0%2C 79.6%25 id in 460 aa gene gene440 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0443 YPO0444 YPO0444 b4390 b4390 465364 466635 + transcriptional regulator NadR Similar to Salmonella typhimurium transcriptional regulator NadR SW:NADR_SALTY (P24518) (409 aa) fasta scores: E(): 0%2C 85.0%25 id in 406 aa%2C and to Escherichia coli transcriptional regulator NadR SW:NADR_ECOLI (P27278) (410 aa) fasta scores: E(): 0%2C 83.7%25 id in 406 aa gene gene441 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0444 YPO0445 YPO0445 YPO0445 466792 467922 + conserved hypothetical protein Similar to Pseudomonas aeruginosa hypothetical protein PA0574 TR:AAG03963 (EMBL:AE004493) (373 aa) fasta scores: E(): 0%2C 57.0%25 id in 372 aa%2C and to Sphingomonas aromaticivorans hypothetical protein TR:O85863 (EMBL:AF079317) (379 aa) fasta scores: E(): 0%2C 37.0%25 id in 373 aa gene gene442 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0445 YPO0446 YPO0446 b4391 b4391 468068 469731 - ABC transporter ATP-binding protein (pseudogene) Similar to Escherichia coli ABC transporter ATP-binding protein YjjK SW:YJJK_ECOLI (P37797) (554 aa) fasta scores: E(): 1.9e-188%2C 89.892%25 id in 554 aa%2C and to Haemophilus influenzae ABC transporter ATP-binding protein Hi1252 SW:YJJK_HAEIN (P45127) (556 aa) fasta scores: E(): 6e-183%2C 85.921%25 id in 554 aa. There is a frameshift around codon 190. The sequence has been checked and is believed to be correct. pseudogene gene443 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0446 YPO0448 YPO0448 YPO0448 469914 470420 - putative lipoprotein Similar to Escherichia coli putative lipoprotein YfiB SW:YFIB_ECOLI (P07021) (160 aa) fasta scores: E(): 2.9e-22%2C 46.1%25 id in 154 aa%2C and to Pseudomonas aeruginosa probable outer membrane lipoprotein Pa1119 TR:AAG04508 (EMBL:AE004542) (168 aa) fasta scores: E(): 4.9e-26%2C 49.4%25 id in 168 aa gene gene444 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0448 YPO0449 YPO0449 YPO0449 470426 471703 - putative exported protein Similar to Escherichia coli hypothetical 46.0 kDa protein in aroF-rplS intergenic region YfiN SW:YFIN_ECOLI (P46139) (408 aa) fasta scores: E(): 3.1e-52%2C 36.524%25 id in 397 aa%2C and to Pseudomonas aeruginosa hypothetical protein Pa1120 TR:Q9I4L5 (EMBL:AE004542) (435 aa) fasta scores: E(): 2.6e-86%2C 55.639%25 id in 399 aa gene gene445 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0449 YPO0450 YPO0450 YPO0450 471724 472347 - putative membrane protein Similar to Pseudomonas aeruginosa hypothetical protein Pa1121 TR:AAG04510 (EMBL:AE004542) (190 aa) fasta scores: E(): 2e-25%2C 43.2%25 id in 148 aa%2C and to Escherichia coli hypothetical 19.0 kDa protein in aroF-rplS intergenic region precursor YfiR SW:YFIR_ECOLI (P76597) (172 aa) fasta scores: E(): 4.8e-16%2C 36.0%25 id in 178 aa gene gene446 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0450 YPO0451 YPO0451 YPO0451 472722 475448 - putative cation-transporting P-type ATPase Similar to Pseudomonas aeruginosa probable cation-transporting P-type ATPase Pa1429 TR:AAG04818 (EMBL:AE004572) (902 aa) fasta scores: E(): 0%2C 44.4%25 id in 899 aa%2C and to Synechocystis sp cation-transporting ATPase Pma1 SW:ATA1_SYNY3 (P37367) (905 aa) fasta scores: E(): 0%2C41.5%25 id in 867 aa gene gene447 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0451 YPO0452 YPO0452 slt slt 476018 477937 + putative soluble lytic murein transglycosylase Similar to Escherichia coli soluble lytic murein transglycosylase precursor Slt SW:SLT_ECOLI (P03810) (645 aa) fasta scores: E(): 0%2C 63.7%25 id in 637 aa%2C and to Vibrio cholerae soluble lytic murein transglycosylase VC0700 TR:Q9KU29 (EMBL:AE004156) (648 aa) fasta scores: E(): 0%2C35.1%25 id in 639 aa gene gene448 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0452 YPO0453 YPO0453 rtrY rtrY 478188 478565 + putative Trp operon repressor Similar to Escherichia coli trp operon repressor TrpR SW:TRPR_ECOLI (P03032) (107 aa) fasta scores: E(): 3.9e-26%2C 70.2%25 id in 104 aa%2C and to Enterobacter aerogenes trp operon repressor TrpR SW:TRPR_ENTAE (P39439) (108 aa) fasta scores: E(): 4.9e-28%2C 70.9%25 id in 110 aa gene gene449 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0453 YPO0454 YPO0454 YPO0454 478562 479104 - conserved hypothetical protein Similar to Escherichia coli hypothetical protein YjjX SW:YJJX_ECOLI (P39411) (173 aa) fasta scores: E(): 0%2C57.6%25 id in 170 aa%2C and to Vibrio cholerae hypothetical protein VC0702 TR:Q9KU27 (EMBL:AE004156) (183 aa) fasta scores: E(): 0%2C 53.9%25 id in 167 aa gene gene450 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0454 YPO0455 YPO0455 gpmB gpmB 479198 479845 + putative phosphoglycerate mutase Similar to Escherichia coli probable phosphoglycerate mutase 2 GpmB SW:PMG2_ECOLI (P36942) (215 aa) fasta scores: E(): 0%2C 74.9%25 id in 215 aa%2C and to Deinococcus radiodurans phosphoglycerate putative mutase DR1393 TR:Q9RUJ3 (EMBL:AE001985) (237 aa) fasta scores: E(): 6e-15%2C 32.4%25 id in 207 aa gene gene451 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0455 YPO0456 YPO0456 rob rob 479842 480708 - putative right origin-binding protein Similar to Escherichia coli right origin-binding protein Rob SW:ROB_ECOLI (P27292) (289 aa) fasta scores: E(): 0%2C 68.2%25 id in 289 aa%2C and to Bacillus halodurans possible transcriptional regulator BH3634 TR:Q9K6U1 (EMBL:AP001519) (300 aa) fasta scores: E(): 1.7e-19%2C 30.5%25 id in 311 aa gene gene452 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0456 YPO0457 YPO0457 creA creA 480934 481401 + putative exported protein Similar to Escherichia coli hypothetical protein CreA SW:CREA_ECOLI (P08367) (157 aa) fasta scores: E(): 0%2C78.2%25 id in 156 aa%2C and to Pseudomonas aeruginosa hypothetical protein Pa4564 TR:AAG07952 (EMBL:AE004870) (154 aa) fasta scores: E(): 0%2C 63.9%25 id in 155 aa gene gene453 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0457 YPO0458 YPO0458 arcA arcA 481575 482291 - aerobic respiration control protein Similar to Escherichia coli aerobic respiration control protein ArcA SW:ARCA_ECOLI (P03026) (238 aa) fasta scores: E(): 0%2C 92.9%25 id in 238 aa%2C and to Vibrio cholerae aerobic respiration control protein FexA TR:Q9KPJ9 (EMBL:AE004307) (238 aa) fasta scores: E(): 0%2C 85.3%25 id in 238 aa gene gene454 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0458 YPO0459 YPO0459 thrA thrA 483395 485854 + bifunctional aspartokinase/homoserine dehydrogenase I Similar to Escherichia coli bifunctional aspartokinase/homoserine dehydrogenase I ThrA SW:AK1H_ECOLI (P00561) (820 aa) fasta scores: E(): 0%2C 82.0%25 id in 821 aa%2Cand to Serratia marcescens bifunctional aspartokinase/homoserine dehydrogenase I ThrA SW:AK1H_SERMA (P27725) (819 aa) fasta scores: E(): 0%2C 89.9%25 id in 819 aa gene gene455 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0459 YPO0460 YPO0460 thrB thrB 485857 486786 + homoserine kinase Similar to Escherichia coli homoserine kinase ThrB SW:KHSE_ECOLI (P00547) (310 aa) fasta scores: E(): 0%2C 76.6%25 id in 308 aa%2C and to Serratia marcescens homoserine kinase ThrB SW:KHSE_SERMA (P27722) (309 aa) fasta scores: E(): 0%2C87.4%25 id in 309 aa gene gene456 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0460 YPO0461 YPO0461 thrC thrC 486790 488079 + threonine synthase Similar to Escherichia coli threonine synthase ThrC SW:THRC_ECOLI (P00934) (428 aa) fasta scores: E(): 0%2C 83.1%25 id in 425 aa%2C and to Serratia marcescens threonine synthase ThrC SW:THRC_SERMA (P27735) (429 aa) fasta scores: E(): 0%2C89.3%25 id in 428 aa gene gene457 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0461 YPO0462 YPO0462 YPO0462 488896 489672 - conserved hypothetical protein Similar to Escherichia coli protein YaaA SW:YAAA_ECOLI (P11288) (258 aa) fasta scores: E(): 0%2C 78.6%25 id in 257 aa%2C and to Vibrio cholerae hypothetical protein VC2355 TR:Q9KPL2 (EMBL:AE004305) (257 aa) fasta scores: E(): 0%2C 65.0%25 id in 257 aa gene gene458 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0462 YPO0463 YPO0463 talB talB 490204 491157 + transaldolase B Similar to Escherichia coli transaldolase B TalB SW:TALB_ECOLI (P30148) (316 aa) fasta scores: E(): 0%2C 88.9%25 id in 316 aa%2C and to Haemophilus influenzae transaldolase Tal SW:TAL_HAEIN (P45055) (316 aa) fasta scores: E(): 0%2C77.3%25 id in 313 aa gene gene459 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0463 YPO0464 YPO0464 chlG chlG 491445 492032 + molybdopterin biosynthesis protein Similar to Escherichia coli molybdopterin biosynthesis protein Mog SW:MOG_ECOLI (P28694) (195 aa) fasta scores: E(): 0%2C 87.2%25 id in 195 aa%2C and to Haemophilus influenzae molybdopterin biosynthesis protein Mog SW:MOG_HAEIN (P44645) (197 aa) fasta scores: E(): 0%2C75.4%25 id in 187 aa gene gene460 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0464 YPO0465 YPO0465 YPO0465 492160 493548 + putative transport protein Similar to Pseudomonas aeruginosa probable MFS transporter Pa5370 TR:AAG08755 (EMBL:AE004949) (438 aa) fasta scores: E(): 0%2C 69.2%25 id in 412 aa%2C and to Campylobacter jejuni putative transmembrane transport protein Cj0250C TR:Q9PIP5 (EMBL:AL139074) (436 aa) fasta scores: E(): 0%2C 45.1%25 id in 419 aa gene gene461 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0465 YPO0466 YPO0466 YPO0466 493618 496065 - hypothetical protein No significant database matches. CDS DNA contains low GC content%2C 35.33%25 gene gene462 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0466 YPO0467 YPO0467 yaaH yaaH 496354 496965 - putative membrane protein Similar to Escherichia coli hypothetical 20.1 kDa protein in mog-htgA intergenic region YaaH or B0010 SW:YAAH_ECOLI (P28695) (188 aa) fasta scores: E(): 0%2C 73.7%25 id in 186 aa%2C and to Vibrio cholerae hypothetical protein Vc0770 TR:Q9KTW0 (EMBL:AE004162) (197 aa) fasta scores: E(): 0%2C 66.8%25 id in 184 aa gene gene463 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0467 YPO0468 YPO0468 dnaK dnaK 497339 499249 + chaperone protein DnaK Similar to Escherichia coli chaperone protein DnaK SW:DNAK_ECOLI (P04475) (637 aa) fasta scores: E(): 0%2C 91.4%25 id in 638 aa%2C and to Salmonella typhimurium chaperone protein DnaK SW:DNAK_SALTY (Q56073) (637 aa) fasta scores: E(): 0%2C 91.7%25 id in 637 aa gene gene464 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0468 YPO0469 YPO0469 dnaJ dnaJ 499361 500500 + chaperone protein DnaJ Similar to Escherichia coli chaperone protein DnaJ SW:DNAJ_ECOLI (P08622) (375 aa) fasta scores: E(): 0%2C 86.5%25 id in 378 aa%2C and to Salmonella typhimurium chaperone protein DnaJ SW:DNAJ_SALTY (Q60004) (378 aa) fasta scores: E(): 0%2C 87.6%25 id in 379 aa gene gene465 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0469 YPO0470 YPO0470 ant ant 500743 501927 + sodium-proton antiporter Similar to Escherichia coli sodium-proton antiporter 1 NhaA SW:NHAA_ECOLI (P13738) (388 aa) fasta scores: E(): 0%2C 65.9%25 id in 381 aa%2C and to Vibrio cholerae sodium-proton antiporter affecting protein NhaA TR:O85187 (EMBL:AF051158) (382 aa) fasta scores: E(): 0%2C 64.3%25 id in 389 aa gene gene466 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0470 YPO0471 YPO0471 antO antO 502057 502956 + transcriptional activator protein NhaR Similar to Escherichia coli transcriptional activator protein NhaR SW:NHAR_ECOLI (P10087) (301 aa) fasta scores: E(): 0%2C 78.5%25 id in 298 aa%2C and to Vibrio cholerae transcriptional activator protein NhaR SW:NHAR_VIBCH (P52692) (296 aa) fasta scores: E(): 0%2C 67.2%25 id in 296 aa gene gene467 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0471 YPO0472 YPO0472 b0023 b0023 503087 503350 - 30S ribosomal protein S20 Similar to Escherichia coli 30S ribosomal protein S20 RpsT SW:RS20_ECOLI (P02378) (86 aa) fasta scores: E(): 1.1e-26%2C 87.1%25 id in 85 aa%2C and to Proteus mirabilis 30S ribosomal protein S20 RpsT SW:RS20_PROMI (P42275) (72 aa) fasta scores: E(): 2.2e-22%2C 85.9%25 id in 71 aa gene gene468 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0472 YPO0473 YPO0473 YPO0473 503372 503548 - hypothetical protein Doubtful CDS. No significant database hits gene gene469 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0473 YPO0474 YPO0474 b0025 b0025 503765 504703 + riboflavin biosynthesis protein (includes: riboflavin kinase and FMN adenyltransferase) Similar to Escherichia coli riboflavin biosynthesis protein RibF SW:RIBF_ECOLI (P08391) (313 aa) fasta scores: E(): 0%2C 75.3%25 id in 312 aa%2C and to Vibrio cholerae riboflavin kinase/FMN adenylyltransferase VC0681 TR:Q9KU48 (EMBL:AE004154) (322 aa) fasta scores: E(): 0%2C 64.7%25 id in 306 aa gene gene470 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0474 YPO0475 YPO0475 b0026 b0026 504735 507551 + isoleucyl-tRNA synthetase Similar to Escherichia coli isoleucyl-tRNA synthetase IleS SW:SYI_ECOLI (P00956) (937 aa) fasta scores: E(): 0%2C 83.7%25 id in 937 aa%2C and to Vibrio cholerae isoleucyl-tRNA synthetase Vc0682 TR:Q9KU47 (EMBL:AE004154) (949 aa) fasta scores: E(): 0%2C 69.8%25 id in 951 aa gene gene471 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0475 YPO0476 YPO0476 b0027 b0027 507551 508060 + lipoprotein signal peptidase Similar to Escherichia coli lipoprotein signal peptidase LspA SW:LSPA_ECOLI (P00804) (164 aa) fasta scores: E(): 0%2C 70.1%25 id in 157 aa%2C and to Enterobacter aerogenes lipoprotein signal peptidase LspA SW:LSPA_ENTAE (P13514) (165 aa) fasta scores: E(): 0%2C 67.3%25 id in 162 aa gene gene472 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0476 YPO0476a YPO0476a b0028 b0028 508128 508586 + FKBP-type peptidyl-prolyl cis-trans isomerase Similar to Escherichia coli FKBP-type 16 kDa peptidyl-prolyl cis-trans isomerase FkpB SW:FKBX_ECOLI (P22563) (148 aa) fasta scores: E(): 0%2C 68.8%25 id in 144 aa%2Cand to Klebsiella pneumoniae FKBP-type peptidyl-propyl cis-trans isomerase SlpA TR:Q9RF46 (EMBL:AF201388) (149 aa) fasta scores: E(): 0%2C 70.1%25 id in 144 aa gene gene473 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0476a YPO0477 YPO0477 b0029 b0029 508567 509520 + LytB protein Similar to Escherichia coli protein involved in penicillin tolerance and control of the stringent response%2CLytB SW:LYTB_ECOLI (P22565) (316 aa) fasta scores: E(): 0%2C82.6%25 id in 317 aa%2C and to Vibrio cholerae LytB protein Vc0685 TR:Q9KU44 (EMBL:AE004154) (320 aa) fasta scores: E(): 0%2C 68.7%25 id in 319 aa. Note the large overlap with the upsteam CDS. gene gene474 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0477 YPO0478 YPO0478 YPO0478 509549 509713 + hypothetical protein No significant database hits gene gene475 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0478 YPO0479 YPO0479 tnp tnp 509902 510360 + transposase for the IS1541 insertion element Similar to Salmonella typhimurium%2C and Salmonella typhi transposase for insertion sequence IS200 TnpA SW:T200_SALTY (Q57334) (152 aa) fasta scores: E(): 0%2C 94.1%25 id in 152 aa. Identical to the Yersinia pseudotuberculosis IS1541 element transposase Tnp TR:Q9X9F5 (EMBL:AJ238014) (152 aa) fasta scores: E(): 0%2C 100.0%25 id in 152 aa gene gene476 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0479 YPO0480 YPO0480 b0031 b0031 510813 511634 + dihydrodipicolinate reductase Similar to Escherichia coli dihydrodipicolinate reductase DapB SW:DAPB_ECOLI (P04036) (273 aa) fasta scores: E(): 0%2C 79.5%25 id in 273 aa%2C and to Haemophilus influenzae dihydrodipicolinate reductase DapB SW:DAPB_HAEIN (P45153) (270 aa) fasta scores: E(): 0%2C 71.0%25 id in 269 aa gene gene477 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0480 YPO0481 YPO0481 b0032 b0032 512107 513282 + carbamoyl-phosphate synthase small chain Similar to Escherichia coli carbamoyl-phosphate synthase small chain CarA SW:CARA_ECOLI (P00907) (382 aa) fasta scores: E(): 0%2C 86.4%25 id in 381 aa%2C and to Salmonella typhimurium carbamoyl-phosphate synthase small chain CarA SW:CARA_SALTY (P14845) (382 aa) fasta scores: E(): 0%2C 86.4%25 id in 381 aa gene gene478 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0481 YPO0482 YPO0482 b0033 b0033 513298 516531 + carbamoyl-phosphate synthase large chain Similar to Escherichia coli carbamoyl-phosphate synthase large chain CarB SW:CARB_ECOLI (P00968) (1072 aa) fasta scores: E(): 0%2C 92.6%25 id in 1072 aa%2C and to Salmonella typhimurium carbamoyl-phosphate synthase large chain CarB SW:CARB_SALTY (P14846) (1074 aa) fasta scores: E(): 0%2C 92.7%25 id in 1072 aa gene gene479 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0482 YPO0483 YPO0483 YPO0483 516759 517373 - putative LysE type translocator Similar to Escherichia coli threonine efflux protein RhtC SW:RHTC_ECOLI (P27846) (206 aa) fasta scores: E(): 2.9e-17%2C 31.6%25 id in 206 aa%2C and to Bacillus subtilis hypothetical 23.4 kDa protein in aapA-sigV intergenic region YrhP SW:YRHP_BACSU (O05406) (210 aa) fasta scores: E(): 1.2e-19%2C 34.1%25 id in 211 aa gene gene480 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0483 YPO0484 YPO0484 b4364 b4364 517697 518497 + putative membrane protein Similar to Escherichia coli hypothetical 30.5 kDa protein in dnaT-bglJ intergenic region YjjP SW:YJJP_ECOLI (P39402) (277 aa) fasta scores: E(): 0%2C 74.1%25 id in 251 aa%2Cand to Vibrio cholerae hypothetical protein Vc0438 TR:Q9KUS7 (EMBL:AE004131) (289 aa) fasta scores: E(): 0%2C49.4%25 id in 253 aa gene gene481 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0484 YPO0485 YPO0485 YPO0485 518494 518949 + putative membrane protein Similar to Vibrio cholerae hypothetical protein Vc0439 TR:Q9KUS6 (EMBL:AE004131) (161 aa) fasta scores: E(): 0%2C 60.7%25 id in 150 aa%2C and to Escherichia coli protein YjjB SW:YJJB_ECOLI (P18389) (128 aa) fasta scores: E(): 2.6e-26%2C 73.1%25 id in 104 aa gene gene482 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0485 YPO0486 YPO0486 folA folA 519099 519581 + dihydrofolate reductase Similar to Escherichia coli dihydrofolate reductase FolA SW:DYR_ECOLI (P00379) (159 aa) fasta scores: E(): 0%2C80.5%25 id in 159 aa%2C and to Enterobacter aerogenes dihydrofolate reductase FolA SW:DYR_ENTAE (P31074) (159 aa) fasta scores: E(): 0%2C 80.5%25 id in 159 aa gene gene483 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0486 YPO0487 YPO0487 tnp tnp 519793 520251 + transposase for the IS1541 insertion element Similar to Salmonella typhimurium%2C and Salmonella typhi transposase for insertion sequence IS200 TnpA SW:T200_SALTY (Q57334) (152 aa) fasta scores: E(): 0%2C 94.1%25 id in 152 aa. Identical to the Yersinia pseudotuberculosis IS1541 element transposase Tnp TR:Q9X9F5 (EMBL:AJ238014) (152 aa) fasta scores: E(): 0%2C 100.0%25 id in 152 aa gene gene484 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0487 YPO0488 YPO0488 YPO0488 520786 521007 + hypothetical protein No significant database hits gene gene485 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0488 YPO0489 YPO0489 YPO0489 521134 521598 + putative exported protein No significant database matches gene gene486 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0489 YPO0490 YPO0490 apaH apaH 521688 522557 - bis(5'nucleosyl)-tetraphosphatase Similar to Escherichia coli bis(5'nucleosyl)-tetraphosphatase ApaH SW:APAH_ECOLI (P05637) (280 aa) fasta scores: E(): 0%2C 80.1%25 id in 266 aa%2Cand to Salmonella typhimurium bis(5'nucleosyl)-tetraphosphatase ApaH SW:APAH_SALTY (Q56018) (280 aa) fasta scores: E(): 0%2C 80.5%25 id in 266 aa gene gene487 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0490 YPO0491 YPO0491 apaG apaG 522574 522951 - ApaG protein homologue Similar to Salmonella typhimurium ApaG protein SW:APAG_SALTY (Q56017) (125 aa) fasta scores: E(): 0%2C 72.0%25 id in 125 aa%2C and to Escherichia coli ApaG protein SW:APAG_ECOLI (P05636) (125 aa) fasta scores: E(): 0%2C 72.8%25 id in 125 aa. The function of ApaG is unknown%2C however%2Cmutations in apaG/corD give a phenotype of low-level Co2+ resistance. They also decrease Mg2+ efflux but not influx via the CorA Mg2+ transport system gene gene488 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0491 YPO0492 YPO0492 b0051 b0051 522965 523783 - dimethyladenosine transferase Similar to Escherichia coli dimethyladenosine transferase KsgA SW:KSGA_ECOLI (P06992) (273 aa) fasta scores: E(): 0%2C 80.7%25 id in 270 aa%2C and to Haemophilus influenzae dimethyladenosine transferase KsgA SW:KSGA_HAEIN (P44749) (287 aa) fasta scores: E(): 0%2C 65.5%25 id in 275 aa gene gene489 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0492 YPO0493 YPO0493 pdxA pdxA 523776 524771 - pyridoxal phosphate biosynthetic protein Similar to Escherichia coli pyridoxal phosphate biosynthetic protein PdxA SW:PDXA_ECOLI (P19624) (329 aa) fasta scores: E(): 0%2C 74.9%25 id in 323 aa%2C and to Vibrio cholerae pyridoxal phosphate biosynthetic protein PdxA TR:Q9KUS1 (EMBL:AE004131) (330 aa) fasta scores: E(): 0%2C60.7%25 id in 328 aa gene gene490 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0493 YPO0494 YPO0494 b0053 b0053 524755 526059 - survival protein SurA precursor (peptidyl-prolyl cis-trans isomerase) Similar to Escherichia coli survival protein SurA SW:SURA_ECOLI (P21202) (428 aa) fasta scores: E(): 0%2C 75.4%25 id in 426 aa%2C and to Vibrio cholerae survival protein SurA TR:Q9KUS0 (EMBL:AE004131) (431 aa) fasta scores: E(): 0%2C45.9%25 id in 436 aa gene gene491 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0494 YPO0495 YPO0495 b0054 b0054 526127 528469 - organic solvent tolerance protein precursor Similar to Escherichia coli organic solvent tolerance protein precursor Imp SW:OSTA_ECOLI (P31554) (784 aa) fasta scores: E(): 0%2C 66.5%25 id in 786 aa%2C and to Haemophilus influenzae organic solvent tolerance protein homolog precursor Imp SW:OSTA_HAEIN (P44846) (782 aa) fasta scores: E(): 0%2C 47.1%25 id in 797 aa gene gene492 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0495 YPO0496 YPO0496 b0055 b0055 528654 529487 + DnaJ-like protein Similar to Escherichia coli DnaJ-like protein DjlA SW:DJLA_ECOLI (P31680) (271 aa) fasta scores: E(): 0%2C 69.7%25 id in 277 aa%2C and to Vibrio cholerae DnaJ-related protein Vc0447 TR:Q9KUR8 (EMBL:AE004132) (284 aa) fasta scores: E(): 0%2C 49.5%25 id in 285 aa gene gene493 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0496 YPO0497 YPO0497 rluA rluA 529785 530405 - ribosomal large subunit pseudouridine synthase A Similar to Escherichia coli ribosomal large subunit pseudouridine synthase A RluA SW:RLUA_ECOLI (P39219) (218 aa) fasta scores: E(): 0%2C 77.2%25 id in 206 aa%2C and to Haemophilus influenzae ribosomal large subunit pseudouridine synthase A RluA SW:RLUA_HAEIN (P44782) (219 aa) fasta scores: E(): 0%2C 62.3%25 id in 204 aa gene gene494 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0497 YPO0498 YPO0498 YPO0498 531628 532371 - hypothetical protein No significant database hits gene gene495 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0498 YPO0499 YPO0499 YPO0499 532701 533714 + hypothetical protein Weakly similar to Pseudomonas aeruginosa hypothetical protein PA0082 TR:AAG03472 (EMBL:AE004447) (344 aa) fasta scores: E(): 0.00022%2C 22.9%25 id in 341 aa gene gene496 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0499 YPO0500 YPO0500 YPO0500 533725 534285 + conserved hypothetical protein Similar to Pseudomonas aeruginosa hypothetical protein PA0083 TR:AAG03473 (EMBL:AE004447) (172 aa) fasta scores: E(): 0%2C 59.9%25 id in 162 aa%2C and to Edwardsiella ictaluri putative protein EIP20 TR:O52407 (EMBL:AF037441) (170 aa) fasta scores: E(): 2.1e-20%2C 41.1%25 id in 163 aa. Similar to YPO2939 (59.3%25 identity in 162 aa overlap) gene gene497 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0500 YPO0501 YPO0501 YPO0501 534285 535796 + conserved hypothetical protein Similar to Pseudomonas aeruginosa hypothetical protein PA0084 TR:AAG03474 (EMBL:AE004447) (498 aa) fasta scores: E(): 0%2C 63.9%25 id in 479 aa%2C and to Edwardsiella ictaluri hypothetical protein EIP55 TR:O52406 (EMBL:AF037441) (495 aa) fasta scores: E(): 0%2C 46.6%25 id in 494 aa. Similar to YPO2938 (61.4%25 identity in 479 aa overlap). gene gene498 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0501 YPO0502 YPO0502 YPO0502 535959 536477 + conserved hypothetical protein Similar to Pseudomonas aeruginosa hypothetical protein PA0085 TR:AAG03475 (EMBL:AE004447) (162 aa) fasta scores: E(): 1.5e-15%2C 38.9%25 id in 167 aa gene gene499 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0502 YPO0503 YPO0503 YPO0503 536551 536994 + conserved hypothetical protein Similar to Edwardsiella ictaluri hypothetical protein eip19 TR:O52404 (EMBL:AF037441) (158 aa) fasta scores: E(): 9.1e-07%2C 33.6%25 id in 128 aa%2C and to Pseudomonas aeruginosa hypothetical protein PA0087 TR:AAG03477 (EMBL:AE004447) (169 aa) fasta scores: E(): 0.0041%2C 29.9%25 id in 127 aa gene gene500 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0503 YPO0504 YPO0504 YPO0504 537027 538871 + conserved hypothetical protein Similar to Pseudomonas aeruginosa hypothetical protein PA0088 TR:AAG03478 (EMBL:AE004447) (619 aa) fasta scores: E(): 0%2C 29.0%25 id in 617 aa gene gene501 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0504 YPO0505 YPO0505 YPO0505 538864 539847 + conserved hypothetical protein Similar to Pseudomonas aeruginosa hypothetical protein PA0089 TR:AAG03479 (EMBL:AE004447) (348 aa) fasta scores: E(): 1.2e-22%2C 28.8%25 id in 316 aa%2C and to Pseudomonas aeruginosa hypothetical protein PA2370 TR:AAG05758 (EMBL:AE004663) (338 aa) fasta scores: E(): 3.1e-11%2C 27.6%25 id in 301 aa gene gene502 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0505 YPO0506 YPO0506 clpB clpB 539850 542453 + putative Clp ATPase Similar to Escherichia coli ClpB protein%2C which is thought to form part of a multi-chaperone system supressing protein aggregation%2C SW:CLPB_ECOLI (P03815) (857 aa) fasta scores: E(): 0%2C 35.1%25 identity in 883 aa overlap. Also similar to Yersinia enterocolitica Clp protease-associated protein ClpB TR:AAG00524 (EMBL:AF285784) (890 aa) fasta scores: E(): 0%2C 44.2%25 id in 866 aa. Contains small internal deletions relative to orthologues. gene gene503 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0506 YPO0507 YPO0507 YPO0507 542557 544905 + conserved hypothetical protein Similar to Pseudomonas aeruginosa hypothetical protein PA0095 TR:AAG03485 (EMBL:AE004448) (741 aa) fasta scores: E(): 0%2C 31.5%25 id in 728 aa%2C and to Pseudomonas aeruginosa hypothetical protein PA0091 TR:AAG03481 (EMBL:AE004447) (643 aa) fasta scores: E(): 0%2C 32.7%25 id in 646 aa gene gene504 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0507 YPO0508 YPO0508 YPO0508 544918 545490 + hypothetical protein No significant database hits gene gene505 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0508 YPO0509 YPO0509 YPO0509 545515 547137 + hypothetical protein Internal region weakly similar to Rickettsia prowazekii hypothetical protein RP563 TR:Q9ZCY8 (EMBL:AJ235272) (588 aa) fasta scores: E(): 0.00013%2C 21.8%25 id in 316 aa gene gene506 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0509 YPO0510 YPO0510 YPO0510 547163 548266 + hypothetical protein No significant database hits to the full length CDS. Similar to the internal regions of Synechocystis sp hypothetical protein SLR1819 SW:YI19_SYNY3 (P73709) (331 aa) fasta scores: E(): 4.5e-08%2C 24.1%25 id in 266 aa%2C and to Arabidopsis thaliana FH protein interacting protein FIP2 TR:Q9SE95 (EMBL:AF174429) (298 aa) fasta scores: E(): 1e-07%2C 29.7%25 id in 155 aa gene gene507 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0510 YPO0511 YPO0511 YPO0511 548259 548876 + hypothetical protein No significant database hits gene gene508 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0511 YPO0511a YPO0511a YPO0511a 548882 549247 + hypothetical protein No significant database hits to the full length CDS. Weakly similar to internal regions of Tetrahymena vorax SUBTRN TR:O00946 (EMBL:AF003090) (258 aa) fasta scores: E(): 3%2C 28.4%25 id in 116 aa%2C and to Xenopus laevis maternal transcription factor OCT-1 TR:Q91809 (EMBL:X57165) (758 aa) fasta scores: E(): 6.1%2C 24.8%25 id in 125 aa gene gene509 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0511a YPO0512 YPO0512 YPO0512 549240 549731 + putative lipoprotein Similar to N-terminal regions of Pseudomonas aureofaciens copper-containing nitrite reductase precursor NirK SW:NIR_PSEAR (Q06006) (363 aa) fasta scores: E(): 5.2%2C25.8%25 id in 155 aa%2C and to Pseudomonas aeruginosa hypothetical protein PA0080 TR:AAG03470 (EMBL:AE004447) (154 aa) fasta scores: E(): 0.0001%2C 30.8%25 id in 120 aa. Putative N-terminal lipoprotein attachment site. gene gene510 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0512 YPO0513 YPO0513 YPO0513 549851 551206 + conserved hypothetical protein Similar to Pseudomonas aeruginosa hypothetical protein PA0079 TR:AAG03469 (EMBL:AE004447) (444 aa) fasta scores: E(): 0%2C 35.3%25 id in 445 aa%2C and to Pseudomonas aeruginosa hypothetical protein PA1667 TR:AAG05056 (EMBL:AE004594) (443 aa) fasta scores: E(): 0%2C 32.0%25 id in 450 aa gene gene511 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0513 YPO0514 YPO0514 YPO0514 551203 552813 + putative OmpA-family membrane protein Similar to Pseudomonas aeruginosa hypothetical protein PA0078 TR:AAG03468 (EMBL:AE004447) (449 aa) fasta scores: E(): 4.5e-09%2C 28.2%25 id in 457 aa gene gene512 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0514 YPO0515 YPO0515 YPO0515 552863 556315 + putative membrane protein Similar to Legionella pneumophila IcmF protein TR:O54529 (EMBL:Y15044) (973 aa) fasta scores: E(): 8.3e-11%2C 21.0%25 id in 1008 aa%2C and to Pseudomonas aeruginosa hypothetical protein PA0077 TR:AAG03467 (EMBL:AE004446) (1101 aa) fasta scores: E(): 0%2C 25.5%25 id in 1114 aa. In Legionella pneumophila%2C mutations in icmF resulted in a reduction in conjugation frequency. gene gene513 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0515 YPO0516 YPO0516 YPO0516 556337 556690 + hypothetical protein No significant database hits gene gene514 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0516 YPO0517 YPO0517 hepA hepA 556946 559852 - RNA polymerase associated helicase Similar to Escherichia coli RNA polymerase associated protein (ATP-dependent helicase) RapA SW:HEPA_ECOLI (P23852) (967 aa) fasta scores: E(): 0%2C 79.6%25 id in 967 aa%2C and to Vibrio cholerae RNA polymerase-associated protein HepA VC2506 TR:Q9KP70 (EMBL:AE004320) (969 aa) fasta scores: E(): 0%2C 63.6%25 id in 969 aa gene gene515 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0517 YPO0518 YPO0518 dinA dinA 560313 562682 - DNA polymerase II Similar to Escherichia coli DNA damage-inducible DNA polymerase II PolB SW:DPO2_ECOLI (P21189) (782 aa) fasta scores: E(): 0%2C 72.4%25 id in 783 aa%2C and to Pseudomonas aeruginosa DNA polymerase II PolB TR:AAG05275 (EMBL:AE004614) (787 aa) fasta scores: E(): 0%2C 74.4%25 id in 785 aa gene gene516 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0518 YPO0519 YPO0519 YPO0519 562878 563645 + putative DedA-family membrane protein Similar to Escherichia coli hypothetical protein YabI SW:YABI_ECOLI (P30149) (254 aa) fasta scores: E(): 0%2C58.5%25 id in 253 aa%2C and to Buchnera aphidicola (subsp. Acyrthosiphon pisum) hypothetical protein BU139 TR:BAB12857 (EMBL:AP001118) (256 aa) fasta scores: E(): 0%2C 50.2%25 id in 255 aa gene gene517 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0519 YPO0520 YPO0520 thiQ thiQ 563714 564397 - thiamine transport ATP-binding protein Similar to Escherichia coli thiamine ABC transporter%2C ATP-binding protein ThiQ SW:THIQ_ECOLI (P31548) (232 aa) fasta scores: E(): 0%2C 62.9%25 id in 221 aa%2Cand to Vibrio cholerae putative thiamine ABC transporter%2CATP-binding protein VC2537 TR:Q9KP42 (EMBL:AE004323) (244 aa) fasta scores: E(): 0%2C 58.0%25 id in 207 aa gene gene518 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0520 YPO0521 YPO0521 thiP thiP 564411 565970 - thiamine transport system permease protein Similar to Escherichia coli thiamine ABC transporter%2C permease protein ThiP SW:THIP_ECOLI (P31549) (536 aa) fasta scores: E(): 0%2C 74.0%25 id in 516 aa%2C and to Vibrio cholerae putative thiamine ABC transporter%2C permease protein VC2538 TR:Q9KP41 (EMBL:AE004323) (530 aa) fasta scores: E(): 0%2C 46.5%25 id in 512 aa gene gene519 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0521 YPO0522 YPO0522 tbpA tbpA 565994 566986 - thiamine-binding periplasmic protein Similar to Escherichia coli thiamine ABC transpoter%2Cperiplasmic binding protein protein TbpA SW:TBPA_ECOLI (P31550) (327 aa) fasta scores: E(): 0%2C 72.4%25 id in 323 aa%2Cand to Vibrio cholerae thiamine ABC transporter%2Cperiplasmic thiamin-binding protein VC2539 TR:Q9KP40 (EMBL:AE004323) (330 aa) fasta scores: E(): 0%2C 68.0%25 id in 319 aa gene gene520 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0522 YPO0523 YPO0523 YPO0523 567541 567825 + putative membrane protein Poor database matches%2C similar to the internal region of Caenorhabditis elegans C33a12.10 protein TR:Q18364 (EMBL:Z68493) (339 aa) fasta scores: E(): 1.1%2C31.4%25 id in 105 aa. CDS DNA has a low GC content%2C 26.31%25. Possible horizontal gene transfer. gene gene521 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0523 YPO0524 YPO0524 YPO0524 567926 569587 - conserved hypothetical protein Similar to Escherichia coli hypothetical protein YabN SW:YABN_ECOLI (P33595) (551 aa) fasta scores: E(): 0%2C62.5%25 id in 552 aa%2C and to Vibrio cholerae hypothetical protein VCA0578 TR:Q9KM11 (EMBL:AE004388) (565 aa) fasta scores: E(): 0%2C 36.1%25 id in 565 aa gene gene522 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0524 YPO0525 YPO0525 YPO0525 569825 569998 + hypothetical protein Doubtful CDS with no significant database hits gene gene523 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0525 YPO0526 YPO0526 setA setA 573139 573391 + sugar efflux transporter (pseudogene) Similar to Escherichia coli sugar efflux transporter SetA SW:SETA_ECOLI (P31675) (392 aa) fasta scores: E(): 0%2C70.5%25 id in 386 aa%2C and to Erwinia chrysanthemi sugar efflux transporter SotA SW:SOTA_ERWCH (Q9S3K0) (393 aa) fasta scores: E(): 0%2C 54.2%25 id in 393 aa. CDS disrupted by IS100 element at codon 311 pseudogene gene524 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0526 YPO0527 YPO0527 ypmt1.57c ypmt1.57c 571251 572033 - insertion sequence IS100%2C ATP-binding protein Similar to Escherichia coli insertion sequence IS21 putative ATP-binding protein%2C IstB SW:ISTB_ECOLI (P15026) (265 aa) fasta scores: E(): 0%2C 47.4%25 id in 249 aa. Also almost identical to Yersinia pestis and Escherichia coli putative IS100 transposase ypmt1.57c TR:Q9R3L5 (EMBL:AL117211) (260 aa) fasta scores: E(): 0%2C 99.6%25 id in 260 aa. gene gene525 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0527 YPO0528 YPO0528 y1093 y1093 572030 573052 - transposase for insertion sequence IS100 Similar to Escherichia coli transposase for insertion sequence element IS21 IstA SW:ISTA_ECOLI (P15025) (390 aa) fasta scores: E(): 3e-27%2C 33.1%25 id in 329 aa. Identical to the previously sequenced Yersinia pestis%2CYersinia pseudotuberculosis and Escherichia coli pesticin plasmid insertion sequence transposase Y1055 TR:P74993 (EMBL:U59875) (340 aa) fasta scores: E(): 0%2C 100.0%25 id in 340 aa gene gene526 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0528 YPO0529 YPO0529 YPO0529 573227 573286 + gene gene528 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0529 YPO0529 YPO0529 YPO0529 573305 573373 + gene gene529 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0529 YPO0529 YPO0529 YPO0529 573140 573199 + gene gene527 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0529 YPO0530 YPO0530 leuD leuD 573632 574234 - 3-isopropylmalate dehydratase small subunit Similar to Salmonella typhimurium 3-isopropylmalate dehydratase small subunit LeuD SW:LEUD_SALTY (P04787) (201 aa) fasta scores: E(): 0%2C 80.3%25 id in 198 aa%2C and to Escherichia coli 3-isopropylmalate dehydratase small subunit LeuD SW:LEUD_ECOLI (P30126) (201 aa) fasta scores: E(): 0%2C 79.7%25 id in 197 aa gene gene530 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0530 YPO0531 YPO0531 leuC leuC 574249 575679 - 3-isopropylmalate dehydratase large subunit Similar to Escherichia coli 3-isopropylmalate dehydratase large subunit LeuC SW:LEU2_ECOLI (P30127) (465 aa) fasta scores: E(): 0%2C 85.8%25 id in 464 aa%2C and to Salmonella typhimurium 3-isopropylmalate dehydratase large subunit LeuC SW:LEU2_SALTY (P15717) (464 aa) fasta scores: E(): 0%2C 84.1%25 id in 464 aa gene gene531 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0531 YPO0532 YPO0532 leuB leuB 575681 576778 - 3-isopropylmalate dehydrogenase Similar to Escherichia coli 3-isopropylmalate dehydrogenase LeuB SW:LEU3_ECOLI (P30125) (362 aa) fasta scores: E(): 0%2C 85.9%25 id in 362 aa%2C and to Salmonella typhimurium 3-isopropylmalate dehydrogenase LeuB SW:LEU3_SALTY (P37412) (363 aa) fasta scores: E(): 0%2C 84.8%25 id in 363 aa gene gene532 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0532 YPO0533 YPO0533 leuA leuA 576775 578337 - 2-isopropylmalate synthase Similar to Escherichia coli 2-isopropylmalate synthase LeuA SW:LEU1_ECOLI (P09151) (522 aa) fasta scores: E(): 0%2C 82.4%25 id in 516 aa%2C and to Buchnera aphidicola 2-isopropylmalate synthase LeuA SW:LEU1_BUCRP (P48571) (518 aa) fasta scores: E(): 0%2C 72.3%25 id in 517 aa. IS200-like element inserted 39 bp upstream of the translational start. Possible polar effects on transciption%2C and therefore function. gene gene533 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0533 YPO0534 YPO0534 tnp tnp 578484 578942 - transposase for the IS1541 insertion element Similar to Salmonella typhimurium%2C and Salmonella typhi transposase for insertion sequence IS200 TnpA SW:T200_SALTY (Q57334) (152 aa) fasta scores: E(): 0%2C 94.1%25 id in 152 aa. Identical to the Yersinia pseudotuberculosis IS1541 element transposase Tnp TR:Q9X9F5 (EMBL:AJ238014) (152 aa) fasta scores: E(): 0%2C 100.0%25 id in 152 aa gene gene534 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0534 YPO0535 YPO0535 leuO leuO 580264 581220 + LysR-family transcriptional regulator LeuO Similar to Escherichia coli LysR-family transcriptional regulator LeuO TR:Q9XD92 (EMBL:AF106955) (349 aa) fasta scores: E(): 0%2C 61.4%25 id in 293 aa%2C and to Salmonella typhimurium putative transcriptional regulator LeuO TR:Q9X4P8 (EMBL:AF117227) (341 aa) fasta scores: E(): 0%2C 66.3%25 id in 291 aa gene gene535 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0535 YPO0536 YPO0536 YPO0536 581549 581755 + hypothetical protein Doubtful CDS with no significant database hits gene gene536 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0536 YPO0537 YPO0537 YPO0537 581752 583557 + putative AMP-binding enzyme-family protein Similar to Rattus norvegicus long-chain-fatty-acid--CoA ligase FACL5 SW:LCFE_RAT (O88813) (683 aa) fasta scores: E(): 0%2C 29.7%25 id in 609 aa%2Cand to Vibrio cholerae putative long-chain-fatty-acid--CoA ligase VC2484 TR:Q9KP89 (EMBL:AE004318) (601 aa) fasta scores: E(): 0%2C 56.7%25 id in 596 aa gene gene537 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0537 YPO0538 YPO0538 YPO0538 583588 583698 + hypothetical protein Doubtful CDS with no significant database hits gene gene538 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0538 YPO0539 YPO0539 ilvI ilvI 584017 585744 + acetolactate synthase isozyme III large subunit Similar to Escherichia coli acetolactate synthase isozyme III large subunit IlvI SW:ILVI_ECOLI (P00893) (574 aa) fasta scores: E(): 0%2C 84.0%25 id in 575 aa%2C and to Buchnera aphidicola acetolactate synthase large subunit IlvI SW:ILVI_BUCAP (O85293) (571 aa) fasta scores: E(): 0%2C73.5%25 id in 573 aa gene gene539 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0539 YPO0540 YPO0540 ilvH ilvH 585747 586241 + acetolactate synthase isozyme III small subunit Similar to Salmonella typhimurium acetolactate synthase isozyme III small subunit IlvH SW:ILVH_SALTY (P21622) (163 aa) fasta scores: E(): 0%2C 88.3%25 id in 162 aa%2Cand to Escherichia coli acetolactate synthase isozyme III small subunit Ilvh SW:ILVH_ECOLI (P00894) (163 aa) fasta scores: E(): 0%2C 87.0%25 id in 162 aa gene gene540 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0540 YPO0541 YPO0541 tnp tnp 586440 586898 + transposase for the IS1541 insertion element Similar to Salmonella typhimurium and Salmonella typhi transposase for insertion sequence IS200%2C TnpA%2CSW:TNPA_SALTY (Q57334) (152 aa) fasta scores: E(): 0%2C 93.4%25 id in 152 aa. Almost identical to the Yersinia pseudotuberculosis IS1541 element transposase TnpTR:Q9X9F5 (EMBL:AJ238014) (152 aa) fasta scores: E(): 0%2C 99.3%25 id in 152 aa gene gene541 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0541 YPO0542 YPO0542 YPO0542 587220 587336 - hypothetical protein Doubtful CDS with no significant database hits gene gene542 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0542 YPO0543 YPO0543 cra cra 587403 588413 + putative fructose repressor Similar to Escherichia coli fructose repressor (catabolite repressor/activator) FruR SW:FRUR_ECOLI (P21168) (334 aa) fasta scores: E(): 0%2C 89.2%25 id in 334 aa%2Cand to Vibrio cholerae fructose repressor VCA0519 TR:Q9KM69 (EMBL:AE004382) (326 aa) fasta scores: E(): 0%2C 45.5%25 id in 323 aa gene gene543 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0543 YPO0544 YPO0544 YPO0544 588544 588990 - putative membrane protein Similar to Escherichia coli hypothetical protein YgaW SW:YGAW_ECOLI (P76626) (149 aa) fasta scores: E(): 0%2C65.5%25 id in 145 aa%2C and to Vibrio cholerae hypothetical protein VC1828 TR:Q9KR19 (EMBL:AE004259) (150 aa) fasta scores: E(): 0%2C 61.6%25 id in 146 aa gene gene544 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0544 YPO0546 YPO0546 YPO0546 590086 590544 + conserved hypothetical protein Similar to Escherichia coli hypothetical protein YabB SW:YABB_ECOLI (P22186) (152 aa) fasta scores: E(): 0%2C84.9%25 id in 152 aa%2C and to Haemophilus influenzae hypothetical protein HI1129 SW:YABB_HAEIN (P45056) (151 aa) fasta scores: E(): 0%2C 62.6%25 id in 139 aa gene gene545 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0546 YPO0547 YPO0547 YPO0547 590547 591509 + conserved hypothetical protein Similar to Escherichia coli protein YabC SW:YABC_ECOLI (P18595) (313 aa) fasta scores: E(): 0%2C 77.2%25 id in 307 aa%2C and to Vibrio cholerae hypothetical protein VC2409 TR:Q9KPF9 (EMBL:AE004310) (316 aa) fasta scores: E(): 0%2C 64.0%25 id in 314 aa gene gene546 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0547 YPO0548 YPO0548 ftsL ftsL 591506 591823 + putative cell division protein Similar to Escherichia coli inner membrane protein essential for cell growth and division%2C FtsL SW:FTSL_ECOLI (P22187) (121 aa) fasta scores: E(): 2.5e-30%2C 76.5%25 id in 102 aa%2C and to Vibrio cholerae cell division protein FtsL VC2408 TR:Q9KPG0 (EMBL:AE004310) (106 aa) fasta scores: E(): 5.2e-12%2C 42.1%25 id in 95 aa gene gene547 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0548 YPO0549 YPO0549 ftsI ftsI 591889 593652 + penicillin-binding protein 3 Similar to Escherichia coli penicillin-binding protein 3 PbpB SW:PBP3_ECOLI (P04286) (588 aa) fasta scores: E(): 0%2C 84.4%25 id in 588 aa%2C and to Buchnera aphidicola penicillin-binding protein 3 FtsI SW:PBP3_BUCAP (O85297) (568 aa) fasta scores: E(): 0%2C 57.3%25 id in 558 aa gene gene548 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0549 YPO0550 YPO0550 murE murE 593654 595126 + UDP-N-acetylmuramoylalanyl-D-glutamate--2%2C6-diam i nopimelate ligase Similar to Escherichia coli UDP-N-acetylmuramoylalanyl-D-glutamate--2%2C6-diaminopimelat e ligase MurE SW:MURE_ECOLI (P22188) (494 aa) fasta scores: E(): 0%2C 77.6%25 id in 487 aa%2C and to Haemophilus influenzae UDP-N-acetylmuramoylalanyl-D-glutamate--2%2C6-diaminopimelat e ligase HI1133 SW:MURE_HAEIN (P45060) (488 aa) fasta scores: E(): 0%2C 55.3%25 id in 463 aa gene gene549 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0550 YPO0551 YPO0551 mra mra 595123 596499 + UDP-N-acetylmuramoylalanyl-D-glutamyl-2%2C6-diamin o pimelate--D-alanyl-D-alanyl ligase Similar to Escherichia coli UDP-N-acetylmuramoylalanyl-D-glutamyl-2%2C6-diaminopimelate--D-alanyl-D-alanyl ligase MurF SW:MURF_ECOLI (P11880) (452 aa) fasta scores: E(): 0%2C 69.9%25 id in 458 aa%2C and to Haemophilus influenzae UDP-N-acetylmuramoylalanyl-D-glutamyl-2%2C6-diaminopimelate--D-alanyl-D-alanyl ligase HI1134 SW:MURF_HAEIN (P45061) (457 aa) fasta scores: E(): 0%2C 49.5%25 id in 467 aa%3B~deleted EC_number 6.3.2.15 gene gene550 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0551 YPO0552 YPO0552 mraY mraY 596493 597575 + phospho-N-acetylmuramoyl-pentapeptide-transferas e Similar to Escherichia coli phospho-N-acetylmuramoyl-pentapeptide-transferase MraY SW:MRAY_ECOLI (P15876) (360 aa) fasta scores: E(): 0%2C 89.7%25 id in 360 aa%2C and to Vibrio cholerae phospho-N-acetylmuramoyl-pentapeptide-transferase VC2404 TR:Q9KPG4 (EMBL:AE004310) (360 aa) fasta scores: E(): 0%2C81.4%25 id in 360 aa gene gene551 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0552 YPO0553 YPO0553 murD murD 597578 598894 + UDP-N-acetylmuramoylalanine--D-glutamate ligase Similar to Escherichia coli UDP-N-acetylmuramoylalanine--D-glutamate ligase MurD SW:MURD_ECOLI (P14900) (437 aa) fasta scores: E(): 0%2C 81.0%25 id in 436 aa%2C and to Haemophilus influenzae UDP-N-acetylmuramoylalanine--D-glutamate ligase HI1136 SW:MURD_HAEIN (P45063) (437 aa) fasta scores: E(): 0%2C 58.4%25 id in 438 aa gene gene552 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0553 YPO0554 YPO0554 ftsW ftsW 598894 600096 + cell division protein FtsW Similar to Escherichia coli cell division protein FtsW SW:FTSW_ECOLI (P16457) (414 aa) fasta scores: E(): 0%2C80.6%25 id in 403 aa%2C and to Buchnera aphidicola (subsp. Acyrthosiphon pisum) (Acyrthosiphon pisum symbiotic bacterium) cell division protein FtsW SW:FTSW_BUCAI (P57312) (399 aa) fasta scores: E(): 0%2C 62.7%25 id in 373 aa gene gene553 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0554 YPO0555 YPO0555 murG murG 600093 601163 + UDP-N-acetylglucosamine:N-acetylmuramyl-(pentape p tide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase Similar to Escherichia coli peptidoglycan synthesis enzyme%2C UDP-N-acetylglucosamine: N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase MurG SW:MURG_ECOLI (P17443) (354 aa) fasta scores: E(): 0%2C 78.5%25 id in 354 aa%2C and to Vibrio cholerae UDP-N-acetylglucosamine:N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase VC2401 TR:Q9KPG7 (EMBL:AE004310) (354 aa) fasta scores: E(): 0%2C 62.7%25 id in 354 aa gene gene554 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0555 YPO0556 YPO0556 murC murC 601301 602776 + UDP-N-acetylmuramate--alanine ligase Similar to Escherichia coli UDP-N-acetylmuramate--alanine ligase MurC SW:MURC_ECOLI (P17952) (491 aa) fasta scores: E(): 0%2C 86.1%25 id in 490 aa%2Cand to Vibrio cholerae UDP-N-acetylmuramate--alanine ligase VC2400 TR:Q9KPG8 (EMBL:AE004310) (506 aa) fasta scores: E(): 0%2C 73.7%25 id in 479 aa gene gene555 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0556 YPO0557 YPO0557 ddl ddl 602769 603689 + D-alanine--D-alanine ligase B Similar to Escherichia coli D-alanine--D-alanine ligase B DdlB SW:DDLB_ECOLI (P07862) (305 aa) fasta scores: E(): 0%2C 72.7%25 id in 304 aa%2C and to Haemophilus influenzae D-alanine--D-alanine ligase HI1140 SW:DDL_HAEIN (P44405) (306 aa) fasta scores: E(): 0%2C 58.7%25 id in 303 aa gene gene556 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0557 YPO0558 YPO0558 ftsQ ftsQ 603691 604518 + cell division protein FtsQ Similar to Escherichia coli cell division protein FtsQ SW:FTSQ_ECOLI (P06136) (276 aa) fasta scores: E(): 0%2C66.2%25 id in 278 aa%2C and to Vibrio cholerae cell division protein VC2399 TR:Q9KPG9 (EMBL:AE004310) (260 aa) fasta scores: E(): 0%2C 42.2%25 id in 230 aa gene gene557 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0558 YPO0559 YPO0559 divA divA 604545 605801 + cell division protein FtsA Similar to Escherichia coli cell division protein FtsA SW:FTSA_ECOLI (P06137) (420 aa) fasta scores: E(): 0%2C95.0%25 id in 420 aa%2C and to Vibrio cholerae cell division protein FtsA TR:Q9KPH0 (EMBL:AE004310) (420 aa) fasta scores: E(): 0%2C 69.3%25 id in 420 aa gene gene558 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0559 YPO0560 YPO0560 ftsZ ftsZ 605874 607025 + cell division protein FtsZ Similar to Escherichia coli cell division protein FtsZ SW:FTSZ_ECOLI (P06138) (383 aa) fasta scores: E(): 0%2C94.3%25 id in 384 aa%2C and to Buchnera aphidicola cell division protein FtsZ SW:FTSZ_BUCAP (O51929) (384 aa) fasta scores: E(): 0%2C 79.7%25 id in 384 aa gene gene559 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0560 YPO0561 YPO0561 asmB asmB 607110 608045 + UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase Similar to Escherichia coli lipid A biosynthesis protein%2C UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase LpxC SW:LPXC_ECOLI (P07652) (305 aa) fasta scores: E(): 0%2C 92.8%25 id in 305 aa%2C and to Vibrio cholerae UDP-3-O-3-hydroxymyristoyl N-acetylglucosamine deacetylase VC2396 TR:Q9KPH2 (EMBL:AE004310) (305 aa) fasta scores: E(): 0%2C 74.1%25 id in 305 aa gene gene560 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0561 YPO0562 YPO0562 YPO0562 608212 608742 - conserved hypothetical protein Similar to Vibrio cholerae hypothetical protein VC2395 TR:Q9KPH3 (EMBL:AE004310) (157 aa) fasta scores: E(): 4.3e-11%2C 34.1%25 id in 164 aa gene gene561 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0562 YPO0563 YPO0563 YPO0563 608765 609298 + putative exported protein C-terminus similar to Escherichia coli hypothetical protein YacA SW:YACA_ECOLI (P10409) (147 aa) fasta scores: E(): 6e-18%2C 44.0%25 id in 159 aa gene gene562 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0563 YPO0564 YPO0564 azi azi 609376 612090 + preprotein translocase SecA Similar to Escherichia coli preprotein translocase SecA SW:SECA_ECOLI (P10408) (901 aa) fasta scores: E(): 0%2C89.2%25 id in 904 aa%2C and to Vibrio alginolyticus preprotein translocase SecA TR:O87123 (EMBL:AB012226) (908 aa) fasta scores: E(): 0%2C 70.6%25 id in 909 aa gene gene563 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0564 YPO0565 YPO0565 mutT mutT 612385 612771 + mutator protein MutT Similar to Escherichia coli mutator protein MutT SW:MUTT_ECOLI (P08337) (129 aa) fasta scores: E(): 1.9e-28%2C60.2%25 id in 128 aa%2C and to Haemophilus influenzae mutator protein MutT SW:MUTT_HAEIN (P44932) (136 aa) fasta scores: E(): 5.7e-22%2C 51.2%25 id in 125 aa gene gene564 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0565 YPO0566 YPO0566 ypmt1.57c ypmt1.57c 613033 613815 - insertion sequence IS100%2C ATP-binding protein Similar to Escherichia coli insertion sequence IS21 putative ATP-binding protein%2C IstB SW:ISTB_ECOLI (P15026) (265 aa) fasta scores: E(): 0%2C 47.4%25 id in 249 aa. Also almost identical to Yersinia pestis and Escherichia coli putative IS100 transposase ypmt1.57c TR:Q9R3L5 (EMBL:AL117211) (260 aa) fasta scores: E(): 0%2C 99.6%25 id in 260 aa. gene gene565 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0566 YPO0567 YPO0567 y1093 y1093 613812 614834 - transposase for insertion sequence IS100 Similar to Escherichia coli transposase for insertion sequence element IS21 IstA SW:ISTA_ECOLI (P15025) (390 aa) fasta scores: E(): 3e-27%2C 33.1%25 id in 329 aa. Identical to the previously sequenced Yersinia pestis%2CYersinia pseudotuberculosis%2C and Escherichia coli pesticin plasmid insertion sequence transposase Y1055 TR:P74993 (EMBL:U59875) (340 aa) fasta scores: E(): 0%2C 100.0%25 id in 340 aa gene gene566 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0567 YPO0568 YPO0568 YPO0568 615113 615481 - putative membrane protein Similar to Escherichia coli hypothetical protein YqjF SW:YQJF_ECOLI (P42619) (160 aa) fasta scores: E(): 0%2C77.0%25 id in 122 aa%2C and to Escherichia coli hypothetical protein YphA SW:YPHA_ECOLI (P77751) (164 aa) fasta scores: E(): 2.1e-11%2C 40.7%25 id in 123 aa gene gene567 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0568 YPO0569 YPO0569 YPO0569 615812 616096 - conserved hypothetical protein Similar to Escherichia coli hypothetical protein YqjK SW:YQJK_ECOLI (Q47710) (99 aa) fasta scores: E(): 1.6e-13%2C 42.7%25 id in 82 aa gene gene568 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0569 YPO0569a YPO0569a YPO0569a 616093 616488 - conserved hypothetical protein Similar to Escherichia coli hypothetical protein YqjE SW:YQJE_ECOLI (P42618) (134 aa) fasta scores: E(): 6.7e-29%2C 62.3%25 id in 130 aa%2C and to Sesamum indicum hypothetical oleosin protein TR:O04925 (EMBL:U97700) (144 aa) fasta scores: E(): 6.7%2C 29.4%25 id in 136 aa gene gene569 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0569a YPO0570 YPO0570 yqjD yqjD 616491 616796 - putative membrane protein Similar to Escherichia coli hypothetical protein YqjD SW:YQJD_ECOLI (P42617) (101 aa) fasta scores: E(): 9.5e-20%2C 69.3%25 id in 101 aa%2C and to Escherichia coli ElaB protein SW:ELAB_ECOLI (P52084) (101 aa) fasta scores: E(): 5.3e-11%2C 49.4%25 id in 89 aa gene gene570 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0570 YPO0571 YPO0571 YPO0571 616801 616947 - hypothetical protein No significant database hits gene gene571 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0571 YPO0572 YPO0572 YPO0572 616951 617331 - putative exported protein Similar to Escherichia coli hypothetical protein YqjC SW:YQJC_ECOLI (P42616) (127 aa) fasta scores: E(): 1.1e-12%2C 42.3%25 id in 123 aa%2C and to Pseudomonas aeruginosa hypothetical protein PA0542 TR:AAG03931 (EMBL:AE004490) (139 aa) fasta scores: E(): 7.3e-10%2C 41.9%25 id in 117 aa gene gene572 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0572 YPO0573 YPO0573 YPO0573 617557 617946 - putative membrane protein Similar to Escherichia coli hypothetical protein YqjB SW:YQJB_ECOLI (P42615) (127 aa) fasta scores: E(): 1.3e-10%2C 38.7%25 id in 111 aa%2C and to the N-terminus of Neisseria meningitidis hypothetical protein SecD TR:Q9JVJ5 (EMBL:AL162754) (618 aa) fasta scores: E(): 0.32%2C 22.3%25 id in 121 aa gene gene573 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0573 YPO0574 YPO0574 yqjA yqjA 617943 618641 - putative DedA-family membrane protein Similar to Escherichia coli hypothetical protein YqjA SW:YQJA_ECOLI (P42614) (220 aa) fasta scores: E(): 0%2C78.6%25 id in 215 aa%2C and to Escherichia coli hypothetical protein YghB SW:YGHB_ECOLI (P33196) (219 aa) fasta scores: E(): 0%2C 63.7%25 id in 215 aa. Similar to YPO0680 (63.8%25 identity in 218 aa overlap). gene gene574 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0574 YPO0575 YPO0575 YPO0575 618919 619473 - putative lipoprotein Doubtful CDS. No significant database matches gene gene575 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0575 YPO0576 YPO0576 exuR exuR 619701 620495 - exu regulon transcriptional regulator Similar to Erwinia chrysanthemi exu regulon transcriptional regulator ExuR SW:EXUR_ERWCH (Q9X9E0) (259 aa) fasta scores: E(): 0%2C 86.3%25 id in 256 aa%2C and to Escherichia coli exu regulon transcriptional regulator ExuR SW:EXUR_ECOLI (P42608) (258 aa) fasta scores: E(): 0%2C 75.2%25 id in 258 aa gene gene576 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0576 YPO0577 YPO0577 exuT exuT 620758 622062 - ExuT transport protein Similar to Erwinia chrysanthemi ExuT protein TR:P94774 (EMBL:U86689) (345 aa) fasta scores: E(): 0%2C87.0%25 id in 330 aa%2C and to the C-terminus region of the Escherichia coli hexuronate transporter ExuT SW:EXUT_ECOLI (P42609) (472 aa) fasta scores: E(): 0%2C 84.1%25 id in 428 aa. The E. coli ExuT N-terminal region may be extended due to an alternative upstream translational start. gene gene577 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0577 YPO0578 YPO0578 YPO0578 622106 622276 + hypothetical protein Doubtful CDS with no significant database hits gene gene578 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0578 YPO0579 YPO0579 uxaC uxaC 622807 624216 + uronate isomerase Similar to Escherichia coli uronate isomerase UxaC SW:UXAC_ECOLI (P42607) (470 aa) fasta scores: E(): 0%2C 83.2%25 id in 469 aa%2C and to Bacillus subtilis uronate isomerase UxaC SW:UXAC_BACSU (O34808) (473 aa) fasta scores: E(): 0%2C52.1%25 id in 468 aa gene gene579 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0579 YPO0580 YPO0580 uxaB uxaB 624415 625866 + altronate oxidoreductase Similar to Escherichia coli altronate oxidoreductase UxaB SW:UXAB_ECOLI (P24214) (483 aa) fasta scores: E(): 0%2C72.3%25 id in 481 aa%2C and to Bacillus subtilis hypothetical altronate oxidoreductase YjmI TR:O34354 (EMBL:AF015825) (480 aa) fasta scores: E(): 0%2C 45.1%25 id in 483 aa gene gene580 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0580 YPO0581 YPO0581 uxaA uxaA 625877 627367 + altronate hydrolase Similar to Escherichia coli altronate hydrolase UxaA SW:UXAA_ECOLI (P42604) (495 aa) fasta scores: E(): 0%2C 78.8%25 id in 496 aa%2C and to Bacillus subtilis altronate hydrolase SW:UXAA_BACSU (O34673) (497 aa) fasta scores: E(): 0%2C 58.8%25 id in 497 aa gene gene581 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0581 YPO0582 YPO0582 YPO0582 627520 628050 + putative membrane protein Similar to Escherichia coli hypothetical protein YgjV SW:YGJV_ECOLI (P42603) (183 aa) fasta scores: E(): 0%2C65.5%25 id in 174 aa gene gene582 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0582 YPO0583 YPO0583 tnp tnp 628168 628626 - transposase for the IS1541 insertion element Similar to Salmonella typhimurium%2C and Salmonella typhi transposase for insertion sequence IS200 TnpA SW:T200_SALTY (Q57334) (152 aa) fasta scores: E(): 0%2C 94.1%25 id in 152 aa. Identical to the Yersinia pseudotuberculosis IS1541 element transposase Tnp TR:Q9X9F5 (EMBL:AJ238014) (152 aa) fasta scores: E(): 0%2C 100.0%25 id in 152 aa gene gene583 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0583 YPO0584 YPO0584 YPO0584 628827 630095 - putative symporter protein Similar to Escherichia coli hypothetical protein YgjU SW:YGJU_ECOLI (P42602) (414 aa) fasta scores: E(): 0%2C77.1%25 id in 407 aa%2C and to Vibrio cholerae putative sodium/dicarboxylate symporter VCA0036 TR:Q9KNC9 (EMBL:AE004347) (405 aa) fasta scores: E(): 0%2C 70.3%25 id in 400 aa gene gene584 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0584 YPO0585 YPO0585 YPO0585 630618 631613 - putative MocA-family oxidoreductase Similar to Escherichia coli hypothetical protein YgjR SW:YGJR_ECOLI (P42599) (328 aa) fasta scores: E(): 0%2C73.5%25 id in 325 aa%2C and to Bacillus subtilis hypothetical protein YulF SW:YULF_BACSU (O05265) (328 aa) fasta scores: E(): 0%2C 46.3%25 id in 326 aa gene gene585 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0585 YPO0586 YPO0586 YPO0586 631816 632325 - conserved hypothetical protein Similar to Escherichia coli hypothetical protein YgjP SW:YGJP_ECOLI (P42597) (179 aa) fasta scores: E(): 0%2C77.8%25 id in 162 aa%2C and to Pseudomonas aeruginosa hypothetical protein PA0560 TR:AAG03949 (EMBL:AE004492) (162 aa) fasta scores: E(): 0%2C 67.1%25 id in 158 aa gene gene586 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0586 YPO0587 YPO0587 YPO0587 632564 635548 - putative autotransporter protein Previously sequenced%2C Yersinia pestis putative autotransporter protein YapG TR:CAC14226 (EMBL:AJ277630). Similar to Salmonella typhimurium pathogenicity island (SPI-3) protein MisL TR:Q9Z625 (EMBL:AF106566) (955 aa) fasta scores: E(): 0%2C 29.7%25 id in 966 aa gene gene587 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0587 YPO0588 YPO0588 YPO0588 636017 637204 + putative methyltransferase Similar to Escherichia coli putative ribosomal RNA small subunit methyltransferase D YgjO SW:RSMD_ECOLI (P42596) (378 aa) fasta scores: E(): 0%2C 63.1%25 id in 379 aa%2Cand to Vibrio cholerae hypothetical protein VC2297 TR:Q9KPR9 (EMBL:AE004300) (416 aa) fasta scores: E(): 0%2C41.3%25 id in 378 aa gene gene588 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0588 YPO0589 YPO0589 fadH fadH 637320 639341 - 2%2C4-dienoyl-CoA reductase Similar to Escherichia coli 2%2C4-dienoyl-CoA reductase [NADPH] FadH SW:FADH_ECOLI (P42593) (671 aa) fasta scores: E(): 0%2C 72.7%25 id in 671 aa%2C and to Pseudomonas aeruginosa 2%2C4-dienoyl-CoA reductase FadH1 TR:AAG06480 (EMBL:AE004733) (679 aa) fasta scores: E(): 0%2C66.3%25 id in 670 aa gene gene589 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0589 YPO0590 YPO0590 hdeD hdeD 639554 640123 - putative membrane protein Similar to Escherichia coli H-NS regulated protein HdeD SW:HDED_ECOLI (P26603) (190 aa) fasta scores: E(): 4.1e-30%2C 46.2%25 id in 186 aa%2C and to Escherichia coli virulence factor homologue MviN SW:MVIN_ECOLI (P75932) (511 aa) fasta scores: E(): 0.35%2C 27.5%25 id in 131 aa gene gene590 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0590 YPO0591 YPO0591 YPO0591 640219 640452 + hypothetical protein No significant database hits to the full length CDS. Weakly similar to internal region of Vaccinia virus hypothetical protein A ORF N SW:YVAN_VACCC (P20523) (70 aa) fasta scores: E(): 9.6%2C 27.5%25 id in 40 aa gene gene591 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0591 YPO0592 YPO0592 YPO0592 640514 642013 - putative kinase protein Internal region of the CDS similar to internal regions of Streptomyces coelicolor protein serine/threonine kinase PkaD TR:Q9L0I0 (EMBL:AL161755) (599 aa) fasta scores: E(): 0.00027%2C 29.4%25 id in 211 aa%2C and to Dictyostelium discoideum RAC-family serine/threonine kinase homologue DagA SW:KRAC_DICDI (P54644) (444 aa) fasta scores: E(): 0.0082%2C 23.8%25 id in 323 aa gene gene592 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0592 YPO0593 YPO0593 YPO0593 642045 643778 - hypothetical protein Poor database hits. Internal region of the CDS similar to internal region of Saccharomyces cerevisiae hypothetical protein YAR002w SW:YAH2_YEAST (P39705) (539 aa) fasta scores: E(): 0.21%2C 22.3%25 id in 224 aa gene gene593 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0593 YPO0594 YPO0594 YPO0594 643834 644817 - conserved hypothetical protein N-terminus of the CDS is similar to Serratia marcescens plasmid (R478) encoded protein TerY TR:P75011 (EMBL:U49054) (197 aa) fasta scores: E(): 3.6e-22%2C 38.0%25 id in 187 aa%2C and to Escherichia coli hypothetical protein TR:P76396 (EMBL:AE000297) (219 aa) fasta scores: E(): 3.1e-11%2C 28.0%25 id in 193 aa gene gene594 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0594 YPO0595 YPO0595 YPO0595 644919 645557 - conserved hypothetical protein Similar to Serratia marcescens plasmid (R478) encoded%2C possible tellurium resistance protein TerY TR:P75011 (EMBL:U49054) (197 aa) fasta scores: E(): 8e-32%2C45.3%25 id in 201 aa%2C and to Escherichia coli hypothetical protein TR:P76396 (EMBL:AE000297) (219 aa) fasta scores: E(): 3.3e-09%2C 33.5%25 id in 194 aa gene gene595 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0595 YPO0596 YPO0596 terX terX 645559 646200 - putative tellurium resistance protein Similar to Serratia marcescens plasmid (R478) encoded%2C possible tellurium resistance protein TerX SW:TERX_SERMA (P75012) (213 aa) fasta scores: E(): 0%2C 86.9%25 id in 213 aa%2C and to Proteus mirabilis TerD TR:Q9S402 (EMBL:AF168355) (192 aa) fasta scores: E(): 1.1e-16%2C 41.2%25 id in 199 aa gene gene596 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0596 YPO0597 YPO0597 terY terY 646233 646871 - putative tellurium resistance protein Similar to Serratia marcescens plasmid (R478) encoded%2C possible tellurium resistance protein TerY TR:P75011 (EMBL:U49054) (197 aa) fasta scores: E(): 0%2C85.3%25 id in 197 aa%2C and to Escherichia coli hypothetical protein TR:P76396 (EMBL:AE000297) (219 aa) fasta scores: E(): 9.9e-12%2C 29.8%25 id in 181 aa gene gene597 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0597 YPO0598 YPO0598 YPO0598 647586 649274 + putative hemolysin activator protein Similar to Serratia marcescens secreted hemolysin activator protein precursor ShlB SW:HLYB_SERMA (P15321) (557 aa) fasta scores: E(): 7.3e-25%2C 26.7%25 id in 502 aa%2Cand to Xylella fastidiosa outer membrane putative hemolysin activator protein XF2550 TR:Q9PAG8 (EMBL:AE004062) (597 aa) fasta scores: E(): 0%2C 43.9%25 id in 560 aa. Similar to termini of YPO2491 (81.5%25 identity in 561 aa overlap) and almost identical to YPO0603 (98.8%25 identity in 243 aa overlap)%2C possible gene remenant. gene gene598 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0598 YPO0599 YPO0599 YPO0599 649319 659206 + putative adhesin Similar to Bordetella bronchiseptica hemagglutinin/adhesin FhaB TR:Q9JP78 (EMBL:AF111796) (3634 aa) fasta scores: E(): 0%2C 23.4%25 id in 3457 aa. N-terminus similar to Serratia marcescens hemolysin precursor ShlA SW:HLYA_SERMA (P15320) (1608 aa) fasta scores: E(): 1.3e-25%2C 23.3%25 id in 1657 aa. Similar to YPO2490 (54.0%25 identity in 3280 aa overlap). gene gene599 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0599 YPO0600 YPO0600 YPO0600 659203 659436 + putative membrane protein Poor database matches. Doubtful CDS gene gene600 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0600 YPO0601 YPO0601 YPO0601 659702 659929 + hypothetical protein Poor database hits. Weakly similar to N-terminal region of Plasmodium falciparum PFEMP1 Var protein TR:Q9NHJ1 (EMBL:AF221799) (109 aa) fasta scores: E(): 2.7%2C31.3%25 id in 67 aa gene gene601 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0601 YPO0602 YPO0602 YPO0602 660010 660441 + hypothetical protein No significant database hits gene gene602 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0602 YPO0603 YPO0603 YPO0603 660498 661454 + putative hemagglutinin/hemolysin-related protein (partial) Probable gene remanent%2C similar to internal regions of Xylella fastidiosa hemagglutinin-like secreted protein XF0889 TR:Q9PEY9 (EMBL:AE003928) (3282 aa) fasta scores: E(): 4.5e-10%2C 30.6%25 id in 245 aa%2C and Neisseria meningitidis hemagglutinin/hemolysin-related protein NMB0493 TR:Q9K0T0 (EMBL:AE002405) (2703 aa) fasta scores: E(): 1e-12%2C 40.8%25 id in 157 aa. Almost identical to YPO0599 (98.8%25 identity in 243 aa overlap). Possibly arose from partial duplication of upstream CDS%2C YPO0599.%3B~was marked partial mRNA gene603 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0603 YPO0606 YPO0606 yapF yapF 661725 664010 - putative autotransporter protein Previously sequenced%2C Yersinia pestis putative autotransporter protein YapF TR:CAC14225 (EMBL:AJ277629). Similar to Acidovorax avenae subsp. avenae flagellin N1141-FLA1 TR:BAB16756 (EMBL:AB040139) (492 aa) fasta scores: E(): 0.0011%2C 20.8%25 id in 476 aa gene gene604 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0606 YPO0607 YPO0607 YPO0607 664070 665065 - putative exported protein Similar to internal regions of Erwinia amylovora zinc-binding metalloprotease PrtA TR:Q9XB65 (EMBL:Y19002) (478 aa) fasta scores: E(): 6.6%2C 21.6%25 id in 264 aa%2C and to Pseudomonas aeruginosa pyridoxal phosphate biosynthetic protein PdxJ TR:AAG04162 (EMBL:AE004512) (248 aa) fasta scores: E(): 4.3%2C 24.0%25 id in 196 aa gene gene605 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0607 YPO0608 YPO0608 YPO0608 665167 666546 - putative membrane protein Poor database matches. Internal region of CDS similar to internal region of Rhizobium meliloti protein involved in the production of beta-(1----2)-glucan%2C NdvB SW:NDVB_RHIME (P20471) (2870 aa) fasta scores: E(): 0.0053%2C23.0%25 id in 343 aa gene gene606 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0608 YPO0609 YPO0609 YPO0609 666869 667987 + putative transporter ATP-binding protein Similar to Bacillus firmus maltose transporter ATP-binding protein MalK TR:O87551 (EMBL:AF084104) (366 aa) fasta scores: E(): 0%2C 51.5%25 id in 375 aa%2C and to Klebsiella oxytoca possible ABC transporter protein CymD TR:Q48394 (EMBL:X86014) (376 aa) fasta scores: E(): 0%2C 55.1%25 id in 374 aa. Similar to YPO1720 (53.9%25 identity in 373 aa overlap). gene gene607 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0609 YPO0610 YPO0610 YPO0610 668070 671423 + hypothetical protein Poor database hits ot the full length CDS. Weakly similar to internal regions of Mycoplasma hyopneumoniae membrane protein YX2 TR:Q9KGX7 (EMBL:AF279293) (560 aa) fasta scores: E(): 0.93%2C 20.2%25 id in 465 aa%2C and to Prevotella ruminicola xylanase precursor TR:Q45397 (EMBL:M83379) (584 aa) fasta scores: E(): 3.5%2C 20.3%25 id in 355 aa gene gene608 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0610 YPO0611 YPO0611 YPO0611 671532 672518 + LacI-family regulatory protein Similar to Bacillus subtilis catabolite control protein A CcpA SW:CCPA_BACSU (P25144) (334 aa) fasta scores: E(): 2.6e-32%2C 29.8%25 id in 329 aa%2C and to Bacillus subtilis LacI repressor-like protein YjmH TR:Q9JMQ1 (EMBL:AF015825) (333 aa) fasta scores: E(): 0%2C 33.7%25 id in 332 aa gene gene609 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0611 YPO0612 YPO0612 YPO0612 672595 673839 + putative sugar binding protein Similar to Rhizobium meliloti putative trehalose/maltose binding protein ThuE TR:Q9R9Q7 (EMBL:AF175299) (423 aa) fasta scores: E(): 1.4e-08%2C 23.9%25 id in 427 aa%2C and to Thermotoga maritima hypothetical protein TM1120 TR:Q9X0K4 (EMBL:AE001770) (436 aa) fasta scores: E(): 5.9e-09%2C 22.3%25 id in 452 aa gene gene610 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0612 YPO0613 YPO0613 YPO0613 673893 674774 + putative permease protein Similar to Agrobacterium radiobacter lactose transport system permease protein LacF SW:LACF_AGRRD (P29823) (298 aa) fasta scores: E(): 6.2e-28%2C 33.1%25 id in 287 aa%2C and to Bacillus halodurans possible L-arabinose transport system protein AraP TR:Q9KEF0 (EMBL:AP001510) (316 aa) fasta scores: E(): 3.2e-31%2C 35.9%25 id in 287 aa gene gene611 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0613 YPO0614 YPO0614 YPO0614 674774 675592 + putative permease Similar to Bacillus halodurans possible sugar transport system protein BH1926 TR:Q9KBK0 (EMBL:AP001513) (285 aa) fasta scores: E(): 1.4e-30%2C 35.9%25 id in 273 aa%2Cand to Bacillus halodurans sugar transport system protein BH1866 TR:Q9KBQ9 (EMBL:AP001513) (285 aa) fasta scores: E(): 2.5e-30%2C 34.2%25 id in 269 aa gene gene612 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0614 YPO0615 YPO0615 YPO0615 675622 676104 + putative exported protein No significant database matches gene gene613 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0615 YPO0616 YPO0616 YPO0616 676155 678338 + putative glycosyl hydrolase Similar to Flavobacterium meningosepticum beta-glucosidase Bgl TR:O30713 (EMBL:AF015915) (726 aa) fasta scores: E(): 0%2C 38.6%25 id in 730 aa%2C and to Xylella fastidiosa beta-glucosidase XF0439 TR:Q9PG63 (EMBL:AE003894) (740 aa) fasta scores: E(): 0%2C 41.1%25 id in 733 aa gene gene614 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0616 YPO0617 YPO0617 YPO0617 678402 679928 - putative membrane protein Similar to Pseudomonas aeruginosa outer membrane component of multidrug resistance efflux pump OprJ SW:OPRJ_PSEAE (Q51397) (479 aa) fasta scores: E(): 7.2e-12%2C24.9%25 id in 418 aa%2C and to Pseudomonas aeruginosa hypothetical protein PA4144 TR:AAG07531 (EMBL:AE004831) (471 aa) fasta scores: E(): 2.2e-18%2C 24.9%25 id in 490 aa gene gene615 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0617 YPO0618 YPO0618 YPO0618 679933 681702 - putative membrane protein Similar to Escherichia coli hypothetical transporter YjcQ SW:YJCQ_ECOLI (P32715) (683 aa) fasta scores: E(): 5.5e-22%2C 26.9%25 id in 572 aa%2C and to Streptomyces coelicolor putative integral membrane protein SC9A4.21 TR:CAC01648 (EMBL:AL391072) (645 aa) fasta scores: E(): 0.1%2C 24.7%25 id in 461 aa gene gene616 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0618 YPO0619 YPO0619 YPO0619 681818 682867 - putative HlyD family secretion protein Similar to Escherichia coli hypothetical protein YjcR SW:YJCR_ECOLI (P32716) (343 aa) fasta scores: E(): 0%2C38.3%25 id in 332 aa%2C and to Neisseria meningitidis possible fatty acid efflux system protein NMB0318 TR:Q9K160 (EMBL:AE002389) (384 aa) fasta scores: E(): 4.2e-17%2C 29.4%25 id in 350 aa gene gene617 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0619 YPO0620 YPO0620 YPO0620 682877 683203 - putative exported protein Similar to internal fragments of Streptomyces fradiae transporter protein UrdJ TR:Q9RP97 (EMBL:AF164961) (525 aa) fasta scores: E(): 6.2%2C 27.0%25 id in 100 aa%2C and Zymomonas mobilis hypothetical ABC transporter permease protein TR:Q9RQC7 (EMBL:AF117351) (337 aa) fasta scores: E(): 0.059%2C 34.8%25 id in 92 aa gene gene618 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0620 YPO0621 YPO0621 YPO0621 683209 683409 - hypothetical protein No significant database hits gene gene619 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0621 YPO0622 YPO0622 YPO0622 683582 683689 - hypothetical protein No significant database hits gene gene620 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0622 YPO0623 YPO0623 YPO0623 684175 685407 + putative aminotransferase Similar to Lactococcus lactis aspartate aminotransferase AspC TR:Q9R6Q3 (EMBL:AF035157) (393 aa) fasta scores: E(): 3.1e-29%2C 31.4%25 id in 373 aa%2C and to Pyrococcus abyssi possible aspartate aminotransferase AspC TR:Q9V0L2 (EMBL:AJ248285) (389 aa) fasta scores: E(): 0%2C33.4%25 id in 383 aa gene gene621 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0623 YPO0624 YPO0624 YPO0624 685400 686851 + putative membrane protein Similar to Bacillus firmus Na+/H+ antiporter protein NhaC SW:NHAC_BACFI (P27611) (462 aa) fasta scores: E(): 3.8e-12%2C 24.0%25 id in 496 aa%2C and to Halobacterium sp. NRC-1 possible Na+/H+ antiporter protein NHAC1 TR:AAG18982 (EMBL:AE004998) (521 aa) fasta scores: E(): 9.2e-25%2C 27.2%25 id in 504 aa gene gene622 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0624 YPO0625 YPO0625 YPO0625 686855 687301 + hypothetical protein Similar to Paracoccus denitrificans hypothetical protein XoxI TR:Q51674 (EMBL:U34346) (183 aa) fasta scores: E(): 0.079%2C 27.0%25 id in 152 aa%2C and to Methylobacterium extorquens hypothetical protein MxaD TR:Q49142 (EMBL:L41608) (176 aa) fasta scores: E(): 0.14%2C 23.8%25 id in 147 aa. CDS DNA has a low G+C content%2C 34.67%25. Possible horizontally acquired gene gene gene623 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0625 YPO0626 YPO0626 YPO0626 687471 688061 + conserved hypothetical protein Similar to Campylobacter jejuni hypothetical helix-turn-helix containing protein CJ1387C TR:Q9PMR3 (EMBL:AL139078) (218 aa) fasta scores: E(): 2.2e-14%2C 33.7%25 id in 190 aa%2C and to Vibrio cholerae hypothetical protein VC0355 TR:Q9KV03 (EMBL:AE004124) (240 aa) fasta scores: E(): 4.6e-12%2C 28.7%25 id in 181 aa. CDS DNA has a low G+C content%2C 35.36%25. Possible horizontally acquired gene gene gene624 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0626 YPO0627 YPO0627 YPO0627 688077 688457 + putative translational inhibitor protein Similar to Homo sapiens translational inhibitor protein YER057c/YJGF SW:UK14_HUMAN (P52758) (137 aa) fasta scores: E(): 1.9e-18%2C 45.2%25 id in 124 aa%2C and to Bacillus halodurans possible translation initiation inhibitor BH0063 TR:Q9KGJ8 (EMBL:AP001507) (124 aa) fasta scores: E(): 6e-21%2C 53.2%25 id in 126 aa. CDS DNA has a low G+C content%2C35.43%25. Possible horizontally acquired gene gene gene625 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0627 YPO0628 YPO0628 YPO0628 688742 689146 + putative translational inhibitor protein Similar to Rattus norvegicus translational inhibitor protein SW:UK14_RAT (P52759) (136 aa) fasta scores: E(): 0.00018%2C 31.3%25 id in 134 aa%2C and to Streptomyces coelicolor conserved hypothetical protein SC9C7.14c TR:Q9ZBJ6 (EMBL:AL035161) (132 aa) fasta scores: E(): 7.8e-09%2C 38.0%25 id in 129 aa gene gene626 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0628 YPO0629 YPO0629 YPO0629 689361 689663 - conserved hypothetical protein Similar to Escherichia coli hypothetical protein YdhR SW:YDHR_ECOLI (P77225) (101 aa) fasta scores: E(): 9.3e-20%2C 50.0%25 id in 100 aa gene gene627 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0629 YPO0630 YPO0630 YPO0630 689923 690639 - conserved hypothetical protein Similar to Pseudomonas aeruginosa hypothetical protein PA0859 TR:AAG04248 (EMBL:AE004520) (200 aa) fasta scores: E(): 1.9e-21%2C 36.6%25 id in 186 aa%2C and to Pseudomonas aeruginosa hypothetical protein PA0058 TR:AAG03448 (EMBL:AE004445) (234 aa) fasta scores: E(): 2.6e-11%2C 27.6%25 id in 203 aa. Possible alternative translational start sites gene gene628 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0630 YPO0631 YPO0631 YPO0631 690801 691733 + LysR-family regulatory protein Similar to Pseudomonas aeruginosa possible transcriptional regulator PA4174 TR:AAG07561 (EMBL:AE004834) (307 aa) fasta scores: E(): 0%2C 42.3%25 id in 298 aa%2C and to Pseudomonas aeruginosa possible transcriptional regulator PA2877 TR:AAG06265 (EMBL:AE004714) (297 aa) fasta scores: E(): 0%2C 37.8%25 id in 296 aa gene gene629 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0631 YPO0632 YPO0632 YPO0632 692184 692692 + hypothetical protein (pseudogene) Similar to Escherichia coli cell filamentation protein Fic SW:FIC_ECOLI (P20605) (200 aa) fasta scores: E(): 0.0094%2C 26.6%25 id in 184 aa%2C and to Lactococcus lactis putative mobilization protein MobC TR:O54679 (EMBL:AF036485) (200 aa) fasta scores: E(): 9.6e-05%2C 26.1%25 id in 176 aa. Contains a frameshift after codon 67. The sequence has been checked and is believed to be correct pseudogene gene630 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0632 YPO0634 YPO0634 YPO0634 692692 692850 - hypothetical protein doubtful CDS with no significant database hits gene gene631 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0634 YPO0635 YPO0635 YPO0635 693048 693248 - hypothetical protein doubtful CDS with no significant database hits gene gene632 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0635 YPO0636 YPO0636 YPO0636 693382 693636 + hypothetical protein doubtful CDS with no significant database hits gene gene633 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0636 YPO0637 YPO0637 y1093 y1093 693801 694823 + transposase for insertion sequence IS100 Similar to Escherichia coli transposase for insertion sequence element IS21 IstA SW:ISTA_ECOLI (P15025) (390 aa) fasta scores: E(): 3e-27%2C 33.1%25 id in 329 aa. Identical to the previously sequenced Yersinia pestis%2CYersinia pseudotuberculosis%2C and Escherichia coli pesticin plasmid insertion sequence transposase Y1055 TR:P74993 (EMBL:U59875) (340 aa) fasta scores: E(): 0%2C 100.0%25 id in 340 aa gene gene634 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0637 YPO0638 YPO0638 ypmt1.57c ypmt1.57c 694820 695602 + insertion sequence IS100%2C ATP-binding protein Similar to Escherichia coli insertion sequence IS21 putative ATP-binding protein%2C IstB SW:ISTB_ECOLI (P15026) (265 aa) fasta scores: E(): 0%2C 47.4%25 id in 249 aa. Also almost identical to Yersinia pestis and Escherichia coli putative IS100 transposase ypmt1.57c TR:Q9R3L5 (EMBL:AL117211) (260 aa) fasta scores: E(): 0%2C 99.6%25 id in 260 aa. gene gene635 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0638 YPO0639 YPO0639 YPO0639 695728 697110 + hypothetical protein C-terminal region of the CDS is similar to an internal region of Pseudomonas aeruginosa flagellin FliC TR:O33419 (EMBL:L81176) (259 aa) fasta scores: E(): 2.1%2C25.6%25 id in 242 aa%2C and to the C-terminal region of Escherichia coli hypothetical protein YhhZ SW:YHHZ_ECOLI (P46855) (392 aa) fasta scores: E(): 8.7e-17%2C 33.3%25 id in 228 aa. CDS YP2868 and YP2962 have identity to the the N-terminal region of Escherichia coli hypothetical protein YhhZ. There are no IS100 insertion elements proximal to either CDS (there is an IS200 proximal to YP2962) therefore it is not possible to say if these truncated homologues resulted from recombination. CDS is also shares similarity with the termini of YPO1258 (52.6%25 identity in 462 aa overlap) and and the small CDS YPO3952 (59.5%25 identity in 79 aa overlap) gene gene636 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0639 YPO0640 YPO0640 YPO0640 697119 697589 + hypothetical protein no significant database hits gene gene637 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0640 YPO0641 YPO0641 YPO0641 697667 698071 + hypothetical protein no significant database hits gene gene638 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0641 YPO0641a YPO0641a YPO0641a 698088 698378 + hypothetical protein Poor database hits. Similar to C-terminal region of Lactococcus lactis bacteriophage hypothetical protein TR:O53062 (EMBL:Y11901) (136 aa) fasta scores: E(): 0.83%2C34.7%25 id in 75 aa gene gene639 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0641a YPO0642 YPO0642 YPO0642 698575 698694 + hypothetical protein no significant database hits gene gene640 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0642 YPO0643 YPO0643 alt alt 699212 701050 - RNA polymerase sigma factor RpoD Similar to Escherichia coli RNA polymerase sigma factor (sigma 70) RpoD SW:RPSD_ECOLI (P00579) (613 aa) fasta scores: E(): 0%2C 92.0%25 id in 616 aa%2C and to Salmonella typhimurium RNA polymerase sigma factor RpoD SW:RPSD_SALTY (P07336) (615 aa) fasta scores: E(): 0%2C 92.0%25 id in 615 aa gene gene641 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0643 YPO0644 YPO0644 dnaG dnaG 701208 702956 - DNA primase Similar to Escherichia coli DNA primase SW:PRIM_ECOLI (P02923) (581 aa) fasta scores: E(): 0%2C 76.8%25 id in 581 aa%2C and to Salmonella typhimurium DNA primase DnaG SW:PRIM_SALTY (P07362) (581 aa) fasta scores: E(): 0%2C74.9%25 id in 581 aa gene gene642 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0644 YPO0645 YPO0645 rpsU rpsU 703092 703307 - 30S ribosomal protein S21 Identical to Escherichia coli and Salmonella typhimurium 30S ribosomal protein S21 RpsU SW:RS21_ECOLI (P02379) (70 aa) fasta scores: E(): 2.3e-27%2C 100.0%25 id in 70 aa%2C and to Buchnera aphidicola (subsp Acyrthosiphon pisum) 30S ribosomal protein S21 RpsU TR:BAB12780 (EMBL:AP001118) (71 aa) fasta scores: E(): 1e-25%2C 90.1%25 id in 71 aa gene gene643 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0645 YPO0646 YPO0646 gcp gcp 703713 704726 + putative glycoprotease Similar to Haemophilus ducreyi sialylglycoprotease Gcp TR:Q9L7A5 (EMBL:AF224466) (348 aa) fasta scores: E(): 0%2C 73.4%25 id in 342 aa%2C and to Escherichia coli probable O-sialoglycoprotein endopeptidase Gcp SW:GCP_ECOLI (P05852) (337 aa) fasta scores: E(): 0%2C 87.8%25 id in 335 aa gene gene644 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0646 YPO0647 YPO0647 YPO0647 704972 705622 - putative membrane protein Similar to Escherichia coli hypothetical protein YgiH SW:YGIH_ECOLI (P31056) (205 aa) fasta scores: E(): 0%2C82.8%25 id in 204 aa%2C and to Haemophilus influenzae hypothetical protein HI0266 SW:YGIH_HAEIN (P44603) (199 aa) fasta scores: E(): 0%2C 67.3%25 id in 199 aa gene gene645 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0647 YPO0648 YPO0648 folB folB 705730 706089 + putative dihydroneopterin aldolase Similar to Escherichia coli dihydroneopterin aldolase FolB SW:FOLB_ECOLI (P31055) (122 aa) fasta scores: E(): 0%2C 84.7%25 id in 118 aa%2C and to Vibrio cholerae putative dihydroneopterin aldolase VC0524 TR:Q9KUJ6 (EMBL:AE004138) (129 aa) fasta scores: E(): 2.9e-30%2C 67.2%25 id in 116 aa gene gene646 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0648 YPO0649 YPO0649 bacA bacA 706363 707181 + putative bacitracin resistance protein Similar to Escherichia coli bacitracin resistance protein (possible kinase) BacA SW:BACA_ECOLI (P31054) (273 aa) fasta scores: E(): 0%2C 81.3%25 id in 272 aa%2C and to Bacillus subtilis hypothetical protein YubB TR:P94507 (EMBL:Z99119) (276 aa) fasta scores: E(): 0%2C 47.5%25 id in 276 aa gene gene647 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0649 YPO0650 YPO0650 cca cca 707417 708655 - tRNA nucleotidyltransferase Similar to Escherichia coli tRNA nucleotidyltransferase Cca SW:CCA_ECOLI (P06961) (412 aa) fasta scores: E(): 0%2C 72.6%25 id in 405 aa%2C and to Vibrio cholerae tRNA nucleotidyltransferase VC2446 TR:Q9KPC6 (EMBL:AE004314) (403 aa) fasta scores: E(): 0%2C 61.5%25 id in 400 aa gene gene648 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0650 YPO0651 YPO0651 YPO0651 708815 709438 - putative exported protein Similar to Escherichia coli hypothetical protein YgiM SW:YGIM_ECOLI (P39202) (206 aa) fasta scores: E(): 0%2C71.4%25 id in 206 aa%2C and to Pseudomonas aeruginosa hypothetical protein PA4154 TR:AAG07541 (EMBL:AE004832) (222 aa) fasta scores: E(): 9.9e-23%2C 40.1%25 id in 207 aa. Contains coiled-coil region%2C residues 126 to 157. gene gene649 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0651 YPO0652 YPO0652 YPO0652 709742 711049 + conserved hypothetical protein Similar to Escherichia coli hypothetical protein YgiF SW:YGIF_ECOLI (P30871) (433 aa) fasta scores: E(): 0%2C49.2%25 id in 435 aa%2C and to Vibrio cholerae hypothetical protein VC2440 vc2440 TR:Q9KPD2 (EMBL:AE004314) (505 aa) fasta scores: E(): 0%2C 37.4%25 id in 478 aa gene gene650 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0652 YPO0653 YPO0653 glnE glnE 711220 714075 + glutamate-ammonia-ligase adenylyltransferase Similar to Escherichia coli glutamate-ammonia-ligase adenylyltransferase GlnE SW:GLNE_ECOLI (P30870) (946 aa) fasta scores: E(): 0%2C 72.3%25 id in 943 aa%2C and to Vibrio cholerae glutamate-ammonia-ligase adenylyltransferase VC2438 TR:Q9KPD4 (EMBL:AE004313) (948 aa) fasta scores: E(): 0%2C 60.1%25 id in 958 aa gene gene651 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0653 YPO0654 YPO0654 rfaE rfaE 714210 715640 + ADP-heptose synthase Similar to Escherichia coli ADP-heptose synthase RfaE SW:RFAE_ECOLI (P76658) (477 aa) fasta scores: E(): 0%2C86.1%25 id in 475 aa%2C and to Salmonella enterica ADP-heptose synthase RfaE TR:Q9RFY8 (EMBL:AF163661) (477 aa) fasta scores: E(): 0%2C 84.7%25 id in 472 aa gene gene652 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0654 YPO0655 YPO0655 asoB asoB 715677 716927 + putative permease Similar to Aeromonas salmonicida protein involved in surface layer secretion and virulence%2C AsoB TR:Q44255 (EMBL:L47259) (426 aa) fasta scores: E(): 0%2C 51.6%25 id in 401 aa%2C and to Escherichia coli hypothetical protein YjeH SW:YJEH_ECOLI (P39277) (418 aa) fasta scores: E(): 0%2C 70.1%25 id in 411 aa gene gene653 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0655 YPO0656 YPO0656 YPO0656 717252 717533 - conserved hypothetical protein Similar to Escherichia coli hypothetical protein YqiC SW:YQIC_ECOLI (Q46868) (116 aa) fasta scores: E(): 1.1e-23%2C 88.6%25 id in 79 aa%2C and to Vibrio cholerae hypothetical protein VC0163 TR:Q9KVI3 (EMBL:AE004106) (83 aa) fasta scores: E(): 1.5e-17%2C 62.5%25 id in 80 aa gene gene654 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0656 YPO0657 YPO0657 YPO0657 717689 717940 + hypothetical protein No significant database hits to the full length CDS. N-terminus similar to internal region of Homo sapiens pyruvate kinase PK-L TR:Q16716 (EMBL:U47654) (566 aa) fasta scores: E(): 0.59%2C 40.8%25 id in 49 aa gene gene655 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0657 YPO0658 YPO0658 htrP htrP 718102 718755 + 3%2C4-dihydroxy-2-butanone 4-phosphate synthase Similar to Escherichia coli 3%2C4-dihydroxy-2-butanone 4-phosphate synthase RibB SW:RIBB_ECOLI (P24199) (217 aa) fasta scores: E(): 0%2C 77.4%25 id in 217 aa%2C and to Buchnera aphidicola (subsp Acyrthosiphon pisum) possible 3%2C4-dihydroxy-2-butanone 4-phosphate synthase BU059 SW:RIBB_BUCAI (P57167) (215 aa) fasta scores: E(): 0%2C 66.8%25 id in 211 aa gene gene656 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0658 YPO0659 YPO0659 YPO0659 719214 719996 + conserved hypothetical protein Similar to Escherichia coli hypothetical protein YgiD SW:YGID_ECOLI (P24197) (271 aa) fasta scores: E(): 0%2C71.0%25 id in 262 aa%2C and to Pseudomonas aeruginosa conserved hypothetical protein PA2839 TR:AAG06227 (EMBL:AE004710) (256 aa) fasta scores: E(): 2.2e-32%2C 39.4%25 id in 254 aa gene gene657 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0659 YPO0660 YPO0660 YPO0660 720403 721563 - conserved hypothetical protein Similar to Escherichia coli hypothetical protein YgiC SW:YGIC_ECOLI (P24196) (386 aa) fasta scores: E(): 0%2C78.7%25 id in 385 aa%2C and to the C-terminus of Escherichia coli bifunctional glutathionylspermidine synthetase/amidase Gsp SW:GSP_ECOLI (P43675) (619 aa) fasta scores: E(): 1.3e-10%2C 29.6%25 id in 389 aa gene gene658 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0660 YPO0661 YPO0661 YPO0661 721573 722259 - putative exported protein Similar to Escherichia coli hypothetical protein YgiB SW:YGIB_ECOLI (P24195) (234 aa) fasta scores: E(): 0%2C73.5%25 id in 230 aa gene gene659 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0661 YPO0662 YPO0662 YPO0662 722325 722495 + hypothetical protein doubtful CDS with no significant database matches gene gene660 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0662 YPO0663 YPO0663 hasF hasF 722560 723963 - ABC-transporter outer membrane component Similar to Serratia marcescens haemophore (HasA) ABC-transporter outer membrane component%2C HasF TR:Q54452 (EMBL:X98513) (500 aa) fasta scores: E(): 0%2C 76.7%25 id in 455 aa%2C and to Escherichia coli ABC-transporter outer membrane protein%2C TolC SW:TOLC_ECOLI (P02930) (495 aa) fasta scores: E(): 0%2C 73.2%25 id in 470 aa gene gene661 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0663 YPO0664 YPO0664 YPO0664 724353 724985 + putative MutT-family protein Similar to Rhodobacter sphaeroides tellurite resistance protein TrgA TR:O07841 (EMBL:AF004296) (361 aa) fasta scores: E(): 5.9e-21%2C 37.8%25 id in 196 aa%2C and to Escherichia coli hypothetical protein YqiE SW:YQIE_ECOLI (P36651) (209 aa) fasta scores: E(): 0%2C 82.7%25 id in 208 aa gene gene662 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0664 YPO0665 YPO0665 YPO0665 725019 725444 + conserved hypothetical protein Similar to Escherichia coli hypothetical protein YqiB SW:YQIB_ECOLI (P36652) (140 aa) fasta scores: E(): 0%2C79.7%25 id in 138 aa%2C and to Vibrio cholerae hypothetical protein VC2434 TR:Q9KPD6 (EMBL:AE004313) (148 aa) fasta scores: E(): 1.6e-26%2C 49.3%25 id in 140 aa gene gene663 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0665 YPO0666 YPO0666 icc icc 725526 726353 + Icc protein homologue Similar to Escherichia coli Icc protein SW:ICC_ECOLI (P36650) (275 aa) fasta scores: E(): 0%2C 70.2%25 id in 275 aa. The Icc protein has been shown to affect the expression of the lacZ gene. gene gene664 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0666 YPO0667 YPO0667 YPO0667 726350 726934 + conserved hypothetical protein Similar to Escherichia coli hypothetical protein YqiA SW:YQIA_ECOLI (P36653) (193 aa) fasta scores: E(): 0%2C76.3%25 id in 190 aa%2C and to the C-terminus of Paracoccus denitrificans S-formylglutathione hydrolase FghA TR:Q51671 (EMBL:U34346) (279 aa) fasta scores: E(): 0.52%2C 25.5%25 id in 184 aa gene gene665 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0667 YPO0668 YPO0668 nfxD nfxD 727036 728931 + topoisomerase IV subunit B Similar to Escherichia coli topoisomerase IV subunit B ParE SW:PARE_ECOLI (P20083) (630 aa) fasta scores: E(): 0%2C 91.0%25 id in 631 aa%2C and to Salmonella typhimurium topoisomerase IV subunit B ParE SW:PARE_SALTY (P31598) (630 aa) fasta scores: E(): 0%2C 90.6%25 id in 631 aa gene gene666 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0668 YPO0669 YPO0669 crgA crgA 728935 729846 + LysR-family regulatory protein Similar to Neisseria meningitidis transcriptional regulator controlling adhesion to epithelial cells CrgA TR:Q9JPU9 (EMBL:AF190471) (299 aa) fasta scores: E(): 0%2C44.6%25 id in 294 aa%2C and to Pseudomonas aeruginosa probable transcriptional regulator PA1859 TR:AAG05248 (EMBL:AE004612) (295 aa) fasta scores: E(): 0%2C 63.8%25 id in 293 aa gene gene667 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0669 YPO0670 YPO0670 mda66 mda66 729904 730488 - putative modulator of drug activity Similar to Escherichia coli modulator of drug activity B MdaB SW:MDAB_ECOLI (P40717) (193 aa) fasta scores: E(): 0%2C 67.9%25 id in 190 aa%2C and to Pseudomonas aeruginosa conserved hypothetical protein PA2580 TR:AAG05968 (EMBL:AE004686) (196 aa) fasta scores: E(): 0%2C60.6%25 id in 188 aa gene gene668 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0670 YPO0671 YPO0671 parC parC 730792 733065 + DNA topoisomerase IV subunit A Similar to Serratia marcescens DNA topoisomerase IV subunit A ParC TR:Q9KIR1 (EMBL:AF227958) (756 aa) fasta scores: E(): 0%2C 88.1%25 id in 757 aa%2C and to Escherichia coli DNA topoisomerase IV subunit A ParC SW:PARC_ECOLI (P20082) (752 aa) fasta scores: E(): 0%2C 82.3%25 id in 751 aa gene gene669 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0671 YPO0672 YPO0672 parF parF 733354 734085 + putative acyltransferase Similar to Escherichia coli 1-acyl-sn-glycerol-3-phosphate acyltransferase PlsC SW:PLSC_ECOLI (P26647) (245 aa) fasta scores: E(): 0%2C 71.7%25 id in 244 aa%2C and to Salmonella typhimurium 1-acyl-sn-glycerol-3-phosphate acyltransferase PlsC SW:PLSC_SALTY (P26974) (245 aa) fasta scores: E(): 0%2C 71.7%25 id in 244 aa gene gene670 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0672 YPO0673 YPO0673 sufI sufI 734264 735688 + putative cell division protein Similar to Escherichia coli protein involved in cell division%2C SufI SW:SUFI_ECOLI (P26648) (470 aa) fasta scores: E(): 0%2C 74.2%25 id in 472 aa%2C and to Salmonella typhimurium protein involved in cell division%2C SufI SW:SUFI_SALTY (P40799) (470 aa) fasta scores: E(): 0%2C 73.0%25 id in 471 aa gene gene671 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0673 YPO0674 YPO0674 YPO0674 735996 738340 + conserved hypothetical protein (pseudogene) Similar to Escherichia coli hypothetical protein YgiQ SW:YGIQ_ECOLI (Q46861) (413 aa) fasta scores: E(): 0%2C82.1%25 id in 725 aa%2C and to Vibrio cholerae hypothetical protein VC1711 TR:Q9KRD1 (EMBL:AE004249) (789 aa) fasta scores: E(): 0%2C 61.3%25 id in 776 aa. Contains a frameshift after codon 510. The sequence has been checked and is believed to be correct pseudogene gene672 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0674 YPO0676 YPO0676 YPO0676 738362 739195 - putative aldo/keto reductase family protein Similar to Corynebacterium sp. 2%2C5-diketo-D-gluconic acid reductase TR:P06632 (EMBL:M12799) (278 aa) fasta scores: E(): 0%2C 53.5%25 id in 269 aa%2C and to Escherichia coli hypothetical oxidoreductase YqhE SW:YQHE_ECOLI (Q46857) (275 aa) fasta scores: E(): 0%2C 73.7%25 id in 274 aa gene gene673 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0676 YPO0677 YPO0677 YPO0677 739342 739551 + hypothetical protein no significant database hits gene gene674 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0677 YPO0678 YPO0678 YPO0678 739614 740771 - putative iron-containing alcohol dehydrogenase Similar to Clostridium acetobutylicum NADH-dependent butanol dehydrogenase A BdhA SW:ADHA_CLOAB (Q04944) (389 aa) fasta scores: E(): 0%2C 36.4%25 id in 387 aa%2C and to Escherichia coli hypothetical oxidoreductase YqhD SW:YQHD_ECOLI (Q46856) (387 aa) fasta scores: E(): 0%2C 77.2%25 id in 386 aa gene gene675 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0678 YPO0679 YPO0679 YPO0679 741169 742062 + AraC-family regulatory protein Similar to Escherichia coli hypothetical transcriptional regulator YqhC SW:YQHC_ECOLI (Q46855) (318 aa) fasta scores: E(): 0%2C 61.4%25 id in 285 aa%2C and to Pseudomonas aeruginosa probable transcriptional regulator PA2276 TR:AAG05664 (EMBL:AE004653) (296 aa) fasta scores: E(): 0%2C 48.3%25 id in 290 aa gene gene676 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0679 YPO0680 YPO0680 YPO0680 742154 742816 - putative DedA-family membrane protein Similar to Escherichia coli hypothetical protein YghB SW:YGHB_ECOLI (P33196) (219 aa) fasta scores: E(): 0%2C70.2%25 id in 215 aa%2C and to Escherichia coli hypothetical protein YqjA SW:YQJA_ECOLI (P42614) (220 aa) fasta scores: E(): 0%2C 60.9%25 id in 215 aa. Similar to YPO0574 (63.8%25 identity in 218 aa overlap). gene gene677 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0680 YPO0681 YPO0681 metC metC 743009 744220 - putative cystathionine beta-lyase Similar to Escherichia coli cystathionine beta-lyase MetC SW:METC_ECOLI (P06721) (395 aa) fasta scores: E(): 0%2C70.3%25 id in 391 aa%2C and to Salmonella typhimurium cystathionine beta-lyase MetC SW:METC_SALTY (P18949) (395 aa) fasta scores: E(): 0%2C 69.6%25 id in 391 aa gene gene678 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0681 YPO0682 YPO0682 YPO0682 745023 745736 + MotA/TolQ/ExbB proton channel family protein Similar to Escherichia coli biopolymer transport protein ExbB SW:EXBB_ECOLI (P18783) (244 aa) fasta scores: E(): 0%2C 70.8%25 id in 236 aa%2C and to Pseudomonas putida biopolymer transport protein ExbB SW:EXBB_PSEPU (Q05605) (329 aa) fasta scores: E(): 0%2C 62.7%25 id in 236 aa gene gene679 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0682 YPO0683 YPO0683 YPO0683 745740 746171 + ExbD/TolR-family transport protein Similar to Escherichia coli biopolymer transport protein ExbD SW:EXBD_ECOLI (P18784) (141 aa) fasta scores: E(): 0%2C 67.9%25 id in 140 aa%2C and to Pseudomonas putida biopolymer transport protein ExbD SW:EXBD_PSEPU (Q05606) (142 aa) fasta scores: E(): 2.6e-31%2C 67.1%25 id in 140 aa gene gene680 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0683 YPO0684 YPO0684 YPO0684 746268 747824 - putative membrane protein Similar to Listeria seeligeri hypothetical protein TR:O07686 (EMBL:X97014) (902 aa) fasta scores: E(): 2.7%2C20.7%25 id in 518 aa gene gene681 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0684 YPO0685 YPO0685 YPO0685 747849 748355 - conserved hypothetical protein Similar to Actinobacillus actinomycetemcomitans nonspecific tight adherence protein TadF TR:Q9S4A5 (EMBL:AF152598) (200 aa) fasta scores: E(): 0.0072%2C 25.3%25 id in 178 aa gene gene682 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0685 YPO0686 YPO0686 YPO0686 748405 748875 - putative membrane protein Similar to Actinobacillus actinomycetemcomitans nonspecific tight adherence protein TadE TR:Q9S4A6 (EMBL:AF152598) (191 aa) fasta scores: E(): 0.00022%2C 29.0%25 id in 176 aa gene gene683 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0686 YPO0687 YPO0687 YPO0687 748875 749609 - conserved hypothetical protein Similar to Pasteurella multocida putative nonspecific tight adherence protein TadD TR:Q9L6A6 (EMBL:AF237933) (257 aa) fasta scores: E(): 1.5e-31%2C 42.1%25 id in 228 aa%2C and to Actinobacillus actinomycetemcomitans nonspecific tight adherence protein TadD TR:Q9S4A7 (EMBL:AF152598) (253 aa) fasta scores: E(): 1.6e-26%2C 37.6%25 id in 234 aa gene gene684 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0687 YPO0688 YPO0688 YPO0688 749629 750462 - putative exported protein Similar to Actinobacillus actinomycetemcomitans putative nonspecific tight adherence protein TadC TR:Q9S4A8 (EMBL:AF152598) (288 aa) fasta scores: E(): 9.5e-26%2C 30.9%25 id in 285 aa gene gene685 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0688 YPO0689 YPO0689 YPO0689 750459 751334 - putative membrane protein Similar to Actinobacillus actinomycetemcomitans putative nonspecific tight adherence protein TabB TR:AAD38173 (EMBL:AF152598) (295 aa) fasta scores: E(): 0%2C33.8%25 id in 293 aa gene gene686 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0689 YPO0690 YPO0690 YPO0690 751331 752617 - putative type II secretion protein Similar to Caulobacter crescentus pilus biogenesis protein PilB TR:Q9L714 (EMBL:AF229646) (501 aa) fasta scores: E(): 0%2C 45.9%25 id in 405 aa%2C and to Actinobacillus actinomycetemcomitans putative nonspecific tight adherence protein TadA TR:AAD38172 (EMBL:AF152598) (426 aa) fasta scores: E(): 0%2C 63.5%25 id in 414 aa gene gene687 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0690 YPO0691 YPO0691 YPO0691 752629 753861 - hypothetical protein Poor database hits. Weakly similar to Synechocystis sp hypothetical protein SLR0105 TR:Q55876 (EMBL:D64004) (462 aa) fasta scores: E(): 3.3%2C 21.1%25 id in 336 aa gene gene688 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0691 YPO0692 YPO0692 YPO0692 754057 755372 - putative membrane protein (pseudogene) Similar to Actinobacillus actinomycetemcomitans rough colony protein A RcpA TR:Q9X6J1 (EMBL:AF139249) (460 aa) fasta scores: E(): 2.5e-32%2C 36.9%25 id in 455 aa%2C and to Rhizobium sp hypothetical protein Y4XJ SW:Y4XJ_RHISN (P55702) (423 aa) fasta scores: E(): 2.2e-18%2C 29.8%25 id in 400 aa. Contains a frameshift after codon 284. The sequence has been checked and is believed to be correct pseudogene gene689 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0692 YPO0694 YPO0694 YPO0694 755369 756235 - putative membrane protein Similar to Actinobacillus actinomycetemcomitans membrane protein TR:O66152 (EMBL:AB005741) (274 aa) fasta scores: E(): 7.1e-05%2C 25.0%25 id in 300 aa gene gene690 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0694 YPO0695 YPO0695 YPO0695 756287 756709 - putative membrane protein Similar to Actinobacillus actinomycetemcomitans membrane protein TR:O66151 (EMBL:AB005741) (142 aa) fasta scores: E(): 2.6e-15%2C 33.3%25 id in 129 aa%2C and to Caulobacter crescentus pilus biogenesis protein PilD TR:Q9L719 (EMBL:AF229646) (170 aa) fasta scores: E(): 0.061%2C 26.6%25 id in 158 aa gene gene691 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0695 YPO0696 YPO0696 tnp tnp 756909 757367 + transposase for the IS1541 insertion element Similar to Salmonella typhimurium%2C and Salmonella typhi transposase for insertion sequence IS200 TnpA SW:T200_SALTY (Q57334) (152 aa) fasta scores: E(): 0%2C 94.1%25 id in 152 aa. Identical to the Yersinia pseudotuberculosis IS1541 element transposase Tnp TR:Q9X9F5 (EMBL:AJ238014) (152 aa) fasta scores: E(): 0%2C 100.0%25 id in 152 aa gene gene692 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0696 YPO0697 YPO0697 tnp tnp 757619 758077 + transposase for the IS1541 insertion element Similar to Salmonella typhimurium%2C and Salmonella typhi transposase for insertion sequence IS200 TnpA SW:T200_SALTY (Q57334) (152 aa) fasta scores: E(): 0%2C93.4%25 id in 152 aa. Almost identical to the Yersinia pseudotuberculosis IS1541 element transposase Tn TR:Q9X9F5 (EMBL:AJ238014) (152 aa) fasta scores: E(): 0%2C 99.3%25 id in 152 aa gene gene693 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0697 YPO0698 YPO0698 YPO0698 758430 760910 + outer membrane usher protein Similar to Escherichia coli outer membrane usher protein PapC SW:PAPC_ECOLI (P07110) (836 aa) fasta scores: E(): 0%2C 48.4%25 id in 834 aa%2C and to Proteus mirabilis outer membrane usher protein MrpC TR:Q51904 (EMBL:Z32686) (871 aa) fasta scores: E(): 0%2C 45.8%25 id in 825 aa gene gene694 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0698 YPO0699 YPO0699 YPO0699 760928 761647 + fimbrial chaperone protein Similar to Escherichia coli fimbrial chaperone protein PapD SW:PAPD_ECOLI (P15319) (239 aa) fasta scores: E(): 0%2C 59.1%25 id in 232 aa%2C and to Proteus mirabilis pili chaperone protein MrpD TR:Q51905 (EMBL:Z32686) (252 aa) fasta scores: E(): 0%2C 55.5%25 id in 245 aa gene gene695 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0699 YPO0700 YPO0700 YPO0700 761672 762778 + Fimbrial protein Similar to Escherichia coli fimbrial lectin GafD TR:Q47341 (EMBL:L33969) (343 aa) fasta scores: E(): 2.9e-06%2C 23.6%25 id in 360 aa%2C and to Escherichia coli adhesin F17d-G TR:Q47199 (EMBL:L77091) (344 aa) fasta scores: E(): 3.8e-06%2C 24.6%25 id in 370 aa gene gene696 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0700 YPO0701 YPO0701 YPO0701 762990 764003 - periplasmic binding protein Similar to Escherichia coli siderophore ferrienterobactin-binding periplasmic protein precursor FepB SW:FEPB_ECOLI (P14609) (318 aa) fasta scores: E(): 0%2C53.9%25 id in 293 aa%2C and to Pseudomonas aeruginosa ferrienterobactin-binding periplasmic protein FepB TR:AAG07546 (EMBL:AE004832) (301 aa) fasta scores: E(): 6.1e-32%2C 38.1%25 id in 278 aa gene gene697 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0701 YPO0702 YPO0702 YPO0702 764925 765920 + putative exported protein Poor database hits. Weakly similar to an internal region of Arabidopsis thaliana protein YUP8H12R.30 TR:O64543 (EMBL:AC002986) (566 aa) fasta scores: E(): 9.1%2C26.8%25 id in 123 aa gene gene698 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0702 YPO0703 YPO0703 YPO0703 766012 766581 - putative lipoprotein Poor database matches%2C some similarity to internal regions of Mycobacterium leprae hypothetical 25.3 kDa protein MLCB458.05 TR:Q9X7E1 (EMBL:AL049478) (239 aa) fasta scores: E(): 3.7%2C 24.4%25 id in 160 aa%2C and to Vibrio cholerae hypothetical protein VC1420 TR:Q9KS41 (EMBL:AE004220) (245 aa) fasta scores: E(): 3.7%2C 24.4%25 id in 176 aa gene gene699 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0703 YPO0704 YPO0704 YPO0704 766796 768887 - flagellar assembly protein (pseudogene) Similar to C-terminus of Escherichia coli flagellar assembly protein FhiA SW:FHIA_ECOLI (Q47153) (579 aa) fasta scores: E(): 0%2C 63.9%25 id in 573 aa%2C and to the full length Vibrio parahaemolyticus polar flagellar assembly protein FlhA TR:Q9Z6F4 (EMBL:AF069392) (699 aa) fasta scores: E(): 0%2C 46.1%25 id in 683 aa. Contains a frameshift after codon 424. The sequence has been checked and is believed to be correct pseudogene gene700 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0704 YPO0705 YPO0705 YPO0705 768780 768836 - gene gene707 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0705 YPO0705 YPO0705 YPO0705 768483 768548 - gene gene704 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0705 YPO0705 YPO0705 YPO0705 768099 768164 - gene gene702 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0705 YPO0705 YPO0705 YPO0705 768210 768275 - gene gene703 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0705 YPO0705 YPO0705 YPO0705 768609 768674 - gene gene705 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0705 YPO0705 YPO0705 YPO0705 767964 768029 - gene gene701 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0705 YPO0705 YPO0705 YPO0705 768714 768764 - gene gene706 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0705 YPO0706 YPO0706 flhB flhB 768877 770010 - putative flagellar assembly protein Similar to Yersinia enterocolitica flagellar biosynthetic protein FlhB SW:FLHB_YEREN (Q56886) (383 aa) fasta scores: E(): 0%2C 35.0%25 id in 389 aa%2C and to Pseudomonas aeruginosa probable flagellar biosynthetic protein FlhB TR:AAG04838 (EMBL:AE004574) (378 aa) fasta scores: E(): 0%2C 38.2%25 id in 377 aa gene gene708 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0706 YPO0707 YPO0707 fliR fliR 770010 770783 - putative flagellar assembly protein Similar to Erwinia carotovora flagellar biosynthetic protein FliR SW:FLIR_ERWCA (P34202) (261 aa) fasta scores: E(): 4.9e-23%2C 33.6%25 id in 235 aa%2C and to Pseudomonas aeruginosa flagellar biosynthetic protein FliR TR:AAG04837 (EMBL:AE004574) (258 aa) fasta scores: E(): 1e-25%2C 37.8%25 id in 238 aa gene gene709 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0707 YPO0708 YPO0708 fliQ fliQ 770790 771059 - putative flagellar assembly protein Similar to Vibrio parahaemolyticus polar flagellar assembly protein FliQ TR:Q9Z6F7 (EMBL:AF069392) (89 aa) fasta scores: E(): 4.1e-12%2C 44.3%25 id in 88 aa%2C and to Vibrio cholerae probable flagellar biosynthetic protein FliQ vc2122 TR:Q9KQ79 (EMBL:AE004285) (89 aa) fasta scores: E(): 3.5e-14%2C 50.0%25 id in 88 aa gene gene710 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0708 YPO0709 YPO0709 fliP fliP 771064 771834 - putative flagellar assembly protein Similar to Vibrio parahaemolyticus polar flagellar assembly protein FliP TR:Q9Z6F8 (EMBL:AF069392) (289 aa) fasta scores: E(): 0%2C 52.5%25 id in 221 aa%2C and to Vibrio cholerae flagellar biosynthetic protein VC2123 TR:Q9KQ78 (EMBL:AE004285) (299 aa) fasta scores: E(): 0%2C 54.5%25 id in 222 aa gene gene711 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0709 YPO0710 YPO0710 fliN fliN 771831 772244 - flagellar switch protein Similar to Vibrio parahaemolyticus polar flagellar switch protein FliN TR:Q9Z6G0 (EMBL:AF069392) (136 aa) fasta scores: E(): 6.9e-13%2C 38.1%25 id in 118 aa%2C and to C-terminal region of Erwinia carotovora flagellar motor switch protein FliN SW:FLIN_ERWCA (P35539) (106 aa) fasta scores: E(): 1e-08%2C 48.6%25 id in 72 aa gene gene712 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0710 YPO0711 YPO0711 fliM fliM 772237 773148 - putative flagellar motor switch protein Similar to Rhodobacter sphaeroides flagellar switch protein FliM TR:O85118 (EMBL:AF044254) (323 aa) fasta scores: E(): 0.29%2C 20.7%25 id in 276 aa%2C and to Buchnera aphidicola (subsp Acyrthosiphon pisum) putative motor switch protein FliM TR:BAB12800 (EMBL:AP001118) (315 aa) fasta scores: E(): 0.12%2C 20.2%25 id in 213 aa gene gene713 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0711 YPO0712 YPO0712 flbD flbD 773659 774687 + sigma-54 transcriptional regulatory protein Similar to C-terminal regions of Pseudomonas aeruginosa transcriptional activator FleR TR:Q51454 (EMBL:L41213) (473 aa) fasta scores: E(): 0%2C 50.0%25 id in 346 aa%2C and to Caulobacter crescentus transcriptional regulatory protein FlbD SW:FLBD_CAUCR (P17899) (455 aa) fasta scores: E(): 0%2C 42.4%25 id in 330 aa gene gene714 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0712 YPO0713 YPO0713 fliE fliE 774704 775084 + putative flagellar hook-basal body complex protein Similar to Pseudomonas aeruginosa FliE SW:FLIE_PSEAE (Q51462) (109 aa) fasta scores: E(): 1e-07%2C 44.5%25 id in 110 aa%2C and to Vibrio parahaemolyticus flagellar hook-basal body complex protein FliE TR:Q9LB18 (EMBL:AF069392) (103 aa) fasta scores: E(): 4e-06%2C 39.8%25 id in 98 aa gene gene715 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0713 YPO0714 YPO0714 fliF fliF 775094 776734 + putative flagellar M-ring protein Similar to Pseudomonas aeruginosa flagellar M-ring protein FliF SW:FLIF_PSEAE (Q51463) (599 aa) fasta scores: E(): 2.9e-31%2C 30.8%25 id in 591 aa%2C and to Aquifex aeolicus flagellar M-ring protein FliF SW:FLIF_AQUAE (O67241) (489 aa) fasta scores: E(): 4e-29%2C 31.6%25 id in 455 aa gene gene716 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0714 YPO0715 YPO0715 fla fla 776775 777749 + puative flagellar motor switch protein Similar to Escherichia coli flagellar motor switch protein FliG SW:FLIG_ECOLI (P31067) (331 aa) fasta scores: E(): 2.7e-20%2C 31.1%25 id in 318 aa%2C and to Salmonella typhimurium flagellar motor switch protein FliG SW:FLIG_SALTY (P15933) (331 aa) fasta scores: E(): 3.5e-21%2C31.4%25 id in 318 aa gene gene717 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0715 YPO0716 YPO0716 fliH fliH 777751 778470 + putative flagellar assembly protein Similar to Vibrio parahaemolyticus polar flagellar assembly protein FliH TR:Q9Z6G6 (EMBL:AF069392) (266 aa) fasta scores: E(): 9e-11%2C 24.8%25 id in 210 aa%2C and to Escherichia coli flagellar assembly protein FliH SW:FLIH_ECOLI (P31068) (228 aa) fasta scores: E(): 7.5e-09%2C22.5%25 id in 209 aa gene gene718 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0716 YPO0717 YPO0717 fla fla 778463 779803 + putative flagellum-specific ATP synthase Similar to Salmonella typhimurium flagellum-specific ATP synthase FliI SW:FLII_SALTY (P26465) (456 aa) fasta scores: E(): 0%2C 52.5%25 id in 448 aa%2C and to Escherichia coli flagellum-specific ATP synthase FliI SW:FLII_ECOLI (P52612) (457 aa) fasta scores: E(): 0%2C 52.3%25 id in 444 aa. Similar to YPO1827 (52.1%25 identity in 445 aa overlap)%2C some sequence divergence at the N-terminus. gene gene719 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0717 YPO0718 YPO0718 YPO0718 779816 780190 + hypothetical protein no significant database hits. Glutamine rich protein%2C 22 out of the 124 amino acids are glutamine residues (22%25 of the protein) gene gene720 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0718 YPO0719 YPO0719 YPO0719 780518 780841 - hypothetical protein Poor database hits. Weakly similar to Homo sapiens HSPC043 protein TR:Q9NRY2 (EMBL:AF161411) (104 aa) fasta scores: E(): 0.71%2C 29.7%25 id in 74 aa gene gene721 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0719 YPO0720 YPO0720 YPO0720 780950 781216 - putative flagellar regulatory protein Similar to Vibrio parahaemolyticus lateral flagellar biosynthesis protein LfgM TR:Q56717 (EMBL:U51896) (93 aa) fasta scores: E(): 0.0083%2C 31.5%25 id in 73 aa%2C and to Escherichia coli negative regulator of flagellin synthesis FlgM SW:FLGM_ECOLI (P43532) (97 aa) fasta scores: E(): 3.7%2C26.0%25 id in 73 aa gene gene722 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0720 YPO0721 YPO0721 flgA flgA 781445 782158 - putative flagella basal body P-ring formation protein Similar to Escherichia coli flagella basal body P-ring formation protein FlgA SW:FLGA_ECOLI (P75933) (219 aa) fasta scores: E(): 0.0022%2C 22.7%25 id in 185 aa%2C and to Vibrio parahaemolyticus possible flagella basal body P-ring formation protein LfgA TR:Q56718 (EMBL:U51896) (235 aa) fasta scores: E(): 8e-20%2C 28.9%25 id in 232 aa gene gene723 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0721 YPO0722 YPO0722 flgB flgB 782351 782797 + putative flagellar basal-body rod protein Similar to Escherichia coli flagellar basal-body rod protein FlgB SW:FLGB_ECOLI (P75934) (137 aa) fasta scores: E(): 1.7e-05%2C 37.9%25 id in 140 aa%2C and to Vibrio parahaemolyticus potential basal-body rod protein LfgB TR:Q56719 (EMBL:U51896) (120 aa) fasta scores: E(): 2.8e-09%2C 43.2%25 id in 148 aa gene gene724 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0722 YPO0723 YPO0723 flgC flgC 782800 783225 + putative flagellar basal-body rod protein Similar to Escherichia coli flagellar basal-body rod protein FlgC SW:FLGC_ECOLI (P75935) (134 aa) fasta scores: E(): 5.2e-17%2C 46.1%25 id in 141 aa%2C and to Vibrio parahaemolyticus possible flagellar basal-body rod protein LfgC TR:Q56720 (EMBL:U51896) (144 aa) fasta scores: E(): 6.8e-28%2C 57.0%25 id in 142 aa gene gene725 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0723 YPO0724 YPO0724 flgD flgD 783228 783884 + putative basal-body rod modification protein Similar to Escherichia coli basal-body rod modification protein FlgD SW:FLGD_ECOLI (P75936) (231 aa) fasta scores: E(): 5.4e-08%2C 31.7%25 id in 227 aa%2C and to Vibrio parahaemolyticus possible basal-body rod modification protein LfgD TR:Q56721 (EMBL:U51896) (227 aa) fasta scores: E(): 8.1e-27%2C 42.9%25 id in 203 aa gene gene726 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0724 YPO0725 YPO0725 flgE flgE 783939 785180 + putative flagellar hook protein Similar to Escherichia coli flagellar hook protein FlgE SW:FLGE_ECOLI (P75937) (401 aa) fasta scores: E(): 1.9e-15%2C 38.8%25 id in 415 aa%2C and to Vibrio parahaemolyticus possible flagellar hook protein LfgE TR:Q56722 (EMBL:U51896) (362 aa) fasta scores: E(): 6.4e-33%2C 42.6%25 id in 380 aa gene gene727 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0725 YPO0726 YPO0726 tnp tnp 785404 785862 - transposase for the IS1541 insertion element Similar to Salmonella typhimurium%2C and Salmonella typhi transposase for insertion sequence IS200%2C TnpA%2CSW:T200_SALTY (Q57334) (152 aa) fasta scores: E(): 0%2C93.4%25 id in 152 aa. Almost identical to the Yersinia pseudotuberculosis IS1541 element transposase Tnp TR:Q9X9F5 (EMBL:AJ238014) (152 aa) fasta scores: E(): 0%2C 99.3%25 id in 152 aa gene gene729 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0726 YPO0727 YPO0727 flgF flgF 786008 786619 + putative flagellar basal-body rod protein (pseudogene) Similar to Escherichia coli flagellar basal-body rod protein FlgF SW:FLGF_ECOLI (P75938) (251 aa) fasta scores: E(): 4.6e-27%2C 37.8%25 id in 251 aa%2C and to Vibrio cholerae flagellar basal-body rod protein FlgF TR:Q9KQ11 (EMBL:AE004291) (249 aa) fasta scores: E(): 1.1e-29%2C 42.0%25 id in 250 aa. CDS disrupted by insertion of IS200-like element at codon 39. pseudogene gene728 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0727 YPO0728 YPO0728 flgG flgG 786690 787475 + putative flagellar basal-body rod protein Similar to Escherichia coli flagellar basal-body rod protein FlgG SW:FLGG_ECOLI (P75939) (260 aa) fasta scores: E(): 0%2C 50.2%25 id in 259 aa%2C and to Pseudomonas aeruginosa flagellar basal-body rod protein FlgG TR:AAG04471 (EMBL:AE004539) (261 aa) fasta scores: E(): 0%2C 52.5%25 id in 261 aa gene gene730 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0728 YPO0729 YPO0729 flgH flgH 787510 788175 + putative flagellar L-ring protein Similar to Escherichia coli flagellar L-ring protein FlgH SW:FLGH_ECOLI (P75940) (232 aa) fasta scores: E(): 2.6e-19%2C 35.4%25 id in 223 aa%2C and to Vibrio cholerae flagellar L-ring protein FlgH TR:Q9KQ13 (EMBL:AE004291) (261 aa) fasta scores: E(): 7.2e-28%2C 46.1%25 id in 193 aa gene gene731 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0729 YPO0730 YPO0730 flgI flgI 788252 789364 + putative flagellar P-ring protein Similar to Escherichia coli flagellar P-ring protein precursor FlgI SW:FLGI_ECOLI (P75941) (365 aa) fasta scores: E(): 0%2C 45.7%25 id in 370 aa%2C and to Vibrio parahaemolyticus polar flagellar FlgI homologue TR:Q9X9J4 (EMBL:U12817) (363 aa) fasta scores: E(): 0%2C 48.5%25 id in 363 aa gene gene732 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0730 YPO0731 YPO0731 flgJ flgJ 789374 789667 + putative flagellar protein Similar to Buchnera aphidicola (subsp. Acyrthosiphon pisum) possible FlgJ TR:BAB13050 (EMBL:AP001119) (99 aa) fasta scores: E(): 0.044%2C 29.4%25 id in 68 aa%2C and to Rhodobacter sphaeroides flagellar muramidase protein FlgJ TR:AAG29752 (EMBL:AF205139) (100 aa) fasta scores: E(): 0.27%2C 32.6%25 id in 92 aa gene gene733 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0731 YPO0732 YPO0732 flgK flgK 789780 791141 + putative flagellar hook-associated protein Similar to Escherichia coli flagellar hook-associated protein 1 FlgK SW:FLGK_ECOLI (P33235) (546 aa) fasta scores: E(): 6.8e-24%2C 26.6%25 id in 477 aa%2C and to Salmonella typhimurium flagellar hook-associated protein 1 FlgK SW:FLGK_SALTY (P15932) (552 aa) fasta scores: E(): 1.4e-23%2C 25.9%25 id in 552 aa gene gene734 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0732 YPO0733 YPO0733 flgL flgL 791170 792093 + putative flagellar hook-associated protein Similar to Escherichia coli flagellar hook-associated protein 3 FlgL SW:FLGL_ECOLI (P29744) (317 aa) fasta scores: E(): 3.3e-07%2C 23.4%25 id in 320 aa%2C and to Salmonella typhimurium flagellar hook-associated protein 3 Flgl SW:FLGL_SALTY (P16326) (317 aa) fasta scores: E(): 7.6e-07%2C 24.5%25 id in 319 aa gene gene735 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0733 YPO0734 YPO0734 YPO0734 792138 793118 + hypothetical protein no significant database hits to the full length CDS. N-terminus of the CDS similar to internal regions of Aotus trivirgatus involucrin SW:INVO_AOTTR (P24708) (544 aa) fasta scores: E(): 0.42%2C 25.6%25 id in 172 aa%2C and to Mus musculus nuclear receptor coactivator 1 NCOA1 TR:Q61202 (EMBL:U56920) (1405 aa) fasta scores: E(): 2.6%2C 22.5%25 id in 275 aa gene gene736 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0734 YPO0735 YPO0735 YPO0735 793282 793605 - hypothetical protein no significant database hits gene gene737 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0735 YPO0736 YPO0736 YPO0736 793709 794755 - putative regulatory protein N-terminus similar to the N-terminus regions of Photobacterium profundum protein required for pressure-responsive gene expression ToxR TR:O66013 (EMBL:U77060) (290 aa) fasta scores: E(): 1.6e-06%2C 30.0%25 id in 150 aa%2C and to Vibrio fischeri transmembrane transcriptional activator ToxR TR:Q56689 (EMBL:L29053) (316 aa) fasta scores: E(): 2.1e-06%2C 28.5%25 id in 172 aa gene gene738 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0736 YPO0737 YPO0737 flaA1 flaA1 795381 796595 + putative flagellin Similar to Legionella pneumophila FlaA TR:Q48824 (EMBL:X83232) (475 aa) fasta scores: E(): 3.7e-15%2C 26.9%25 id in 476 aa%2C and to Clostridium chauvoei flagellin FliC TR:BAB13814 (EMBL:D89073) (413 aa) fasta scores: E(): 2.1e-14%2C 29.0%25 id in 417 aa. Similar to YPO0738 (79.8%25 identity in 406 aa overlap) and YPO0739 (78.4%25 identity in 408 aa overlap). gene gene739 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0737 YPO0738 YPO0738 flaA2 flaA2 797110 798309 + putative flagellin Similar to Pseudomonas aeruginosa flagellin FlaA SW:FLAA_PSEAE (P21184) (393 aa) fasta scores: E(): 1.3e-19%2C31.2%25 id in 401 aa%2C and to Bordetella bronchiseptica flagellin FlaA SW:FLAA_BORBR (Q06064) (390 aa) fasta scores: E(): 7.2e-19%2C 30.6%25 id in 402 aa. Similar to YPO0739 (90.5%25 identity in 401 aa overlap) and YPO0737 (79.8%25 identity in 406 aa overlap). gene gene740 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0738 YPO0739 YPO0739 flaA3 flaA3 798592 799797 + putative flagellin Similar to Pseudomonas aeruginosa flagellin FlaA SW:FLAA_PSEAE (P21184) (393 aa) fasta scores: E(): 1.1e-20%2C30.5%25 id in 403 aa%2C and to Clostridium chauvoei flagellin FliC TR:BAB13814 (EMBL:D89073) (413 aa) fasta scores: E(): 2e-15%2C 30.9%25 id in 421 aa. Similar to YPO0738 (90.5%25 identity in 401 aa overlap) and YPO0737 (78.4%25 identity in 408 aa overlap). gene gene741 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0739 YPO0740 YPO0740 fliD fliD 800017 801294 + putative flagellar hook-associated protein Similar to Salmonella typhimurium flagellar hook-associated protein 2 FliD SW:FLID_SALTY (P16328) (466 aa) fasta scores: E(): 2.4e-07%2C 25.3%25 id in 443 aa%2C and to Vibrio parahaemolyticus flagellar hook-associated protein 2 LafB SW:LAFB_VIBPA (Q03475) (445 aa) fasta scores: E(): 2.7e-07%2C 27.8%25 id in 450 aa gene gene742 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0740 YPO0741 YPO0741 fliS fliS 801304 801684 + putative flagellar protein Similar to Vibrio parahaemolyticus flagellar protein LafC TR:P74950 (EMBL:U52957) (128 aa) fasta scores: E(): 9.5e-18%2C 44.3%25 id in 122 aa%2C and to Salmonella typhimurium flagellar protein FliS SW:FLIS_SALTY (P26609) (135 aa) fasta scores: E(): 1.5e-12%2C 36.1%25 id in 119 aa gene gene743 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0741 YPO0742 YPO0742 YPO0742 801686 802012 + hypothetical protein Weakly similar to N-terminus of Haemophilus influenzae phosphohistidine phosphatase SixA homologue HI1338 SW:SIXA_HAEIN (P44164) (164 aa) fasta scores: E(): 6.2%2C 26.5%25 id in 98 aa gene gene744 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0742 YPO0743 YPO0743 YPO0743 802014 803195 + putative flagellar hook-length control protein Similar to Escherichia coli flagellar hook-length control protein FliK SW:FLIK_ECOLI (P52614) (375 aa) fasta scores: E(): 0.0085%2C 22.6%25 id in 381 aa gene gene745 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0743 YPO0744 YPO0744 YPO0744 803234 803704 + putative flagellar biogenesis protein Similar to C-terminal regions of Vibrio parahaemolyticus possible flagellar biogenesis protein LafF TR:P74953 (EMBL:U52957) (166 aa) fasta scores: E(): 0.0008%2C25.7%25 id in 109 aa%2C and to Pseudomonas putida possible flagellar biogenesis protein FliL TR:Q9R9X9 (EMBL:AF031418) (165 aa) fasta scores: E(): 0.047%2C 20.5%25 id in 151 aa gene gene746 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0744 YPO0745 YPO0745 fliA fliA 803710 804405 + putative RNA polymerase sigma factor for flagellar operon Similar to Salmonella typhimurium RNA polymerase sigma factor for flagellar operon FliA SW:FLIA_SALTY (P17168) (239 aa) fasta scores: E(): 4e-20%2C 35.0%25 id in 217 aa%2C and to Vibrio parahaemolyticus RNA polymerase sigma factor for flagellar operon LafS SW:LAFS_VIBPA (Q03474) (242 aa) fasta scores: E(): 2.5e-25%2C 40.3%25 id in 216 aa gene gene747 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0745 YPO0746 YPO0746 motA motA 804421 805287 + putative flagellar motor transmembrane channel protein Similar to Escherichia coli chemotaxis protein MotA SW:MOTA_ECOLI (P09348) (295 aa) fasta scores: E(): 0%2C 37.9%25 id in 277 aa%2C and to Vibrio parahaemolyticus chemotaxis protein LafT SW:LAFT_VIBPA (Q03477) (285 aa) fasta scores: E(): 0%2C 56.4%25 id in 280 aa gene gene748 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0746 YPO0747 YPO0747 lafU lafU 805287 806198 + putative chemotaxis membrane protein Similar to Escherichia coli chemotaxis protein MotB protein SW:MOTB_ECOLI (P09349) (308 aa) fasta scores: E(): 1.1e-23%2C 32.6%25 id in 310 aa%2C and to Vibrio parahaemolyticus chemotaxis protein LafU SW:LAFU_VIBPA (Q03478) (330 aa) fasta scores: E(): 0%2C 40.1%25 id in 297 aa gene gene749 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0747 YPO0748 YPO0748 YPO0748 806267 806455 + hypothetical protein Poor database hits to the full length CDS. Weakly similar to internal fragment of Bacillus thuringiensis transposase TR:Q45711 (EMBL:L29100) (262 aa) fasta scores: E(): 7.9%2C 34.0%25 id in 47 aa gene gene750 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0748 YPO0749 YPO0749 YPO0749 806658 807254 + hypothetical protein no significant database hits to the full length CDS. Similar to C-terminus of Salmonella typhimurium LT2 protein STMF1.40 TR:Q9L9J5 (EMBL:AF170176) (114 aa) fasta scores: E(): 0.0016%2C 26.2%25 id in 103 aa%2C and to N-terminus of Bacillus halodurans BH2153 protein bh2153 TR:Q9KAY3 (EMBL:AP001514) (150 aa) fasta scores: E(): 4.4%2C 25.8%25 id in 128 aa gene gene751 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0749 YPO0750 YPO0750 YPO0750 807251 807706 + putative membrane protein Poor database matches%2C similarity to the internal regions of Drosophila melanogaster mitochondrial cytochrome B SW:CYB_DROME (P18935) (378 aa) fasta scores: E(): 1.1%2C23.6%25 id in 144 aa%2C and to Chrysodidymus synuroideus mitochondrial apocytochrome B TR:Q9MGB4 (EMBL:AF222718) (389 aa) fasta scores: E(): 1.6%2C 23.7%25 id in 131 aa gene gene752 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0750 YPO0751 YPO0751 YPO0751 807780 808061 + putative membrane protein Similar to internal regions of Pseudomonas aeruginosa hypothetical protein PA0659 TR:AAG04048 (EMBL:AE004500) (358 aa) fasta scores: E(): 0.26%2C 28.7%25 id in 87 aa%2C and to Bacillus subtilis hypothetical protein YrbD TR:O32060 (EMBL:Z99118) (484 aa) fasta scores: E(): 5.7%2C 29.3%25 id in 99 aa gene gene753 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0751 YPO0752 YPO0752 pcp pcp 808224 808689 - putative lipoprotein (pseudogene) Similar to Yersinia enterocolitica outer membrane lipoprotein PcpY SW:PCP_YEREN (P31484) (155 aa) fasta scores: E(): 0%2C 72.3%25 id in 155 aa%2C and to Escherichia coli outer membrane lipoprotein SlyB SW:SLYB_ECOLI (P55741) (155 aa) fasta scores: E(): 3.1e-31%2C 61.9%25 id in 155 aa. Contains a frameshift after codon 54. Frame shift occurs at a poly G nonamer. The sequence has been checked and is believed to be correct. Similar to YPO2373 (68.0%25 identity in 119 aa overlap). pseudogene gene754 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0752 YPO0754 YPO0754 YPO0754 808939 809241 - putative membrane protein Similar to Escherichia coli hypothetical protein YjeO SW:YJEO_ECOLI (P39284) (104 aa) fasta scores: E(): 9.2e-07%2C 27.8%25 id in 97 aa gene gene755 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0754 YPO0755 YPO0755 YPO0755 809842 810357 + insertion element DNA-binding protein Similar to Escherichia coli insertion element IS1397 hypothetical 20.1 kDa protein SW:YI9A_ECOLI (Q47309) (173 aa) fasta scores: E(): 2.3e-20%2C 39.6%25 id in 169 aa. gene gene756 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0755 YPO0756 YPO0756 YPO0756 810411 811196 + transposase for insertion sequence IS1661 Similar to Escherichia coli insertion sequence IS1397 transposase%2C OrfB TR:Q47310 (EMBL:X92970) (240 aa) fasta scores: E(): 0%2C 53.0%25 id in 234 aa gene gene757 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0756 YPO0757 YPO0757 YPO0757 811240 812261 - conserved hypothetical protein (pseudogene) Similar to Mycobacterium tuberculosis hypothetical protein MTCY164.07 TR:O05775 (EMBL:Z95150) (379 aa) fasta scores: E(): 7.2e-26%2C 34.2%25 id in 336 aa. This CDS is disrupted by the insertion of IS1661 element. The insertion occurred near the C-terminus. It is not clear whether this insertion affects the function of the protein. pseudogene gene758 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0757 YPO0758 YPO0758 YPO0758 812567 813562 + LacI-family regulatory protein Similar to Escherichia coli transcriptional repressor CytR SW:CYTR_ECOLI (P06964) (341 aa) fasta scores: E(): 1.1e-25%2C 32.0%25 id in 331 aa%2C and to Haemophilus influenzae ribose operon repressor RbsR SW:RBSR_HAEIN (P44329) (331 aa) fasta scores: E(): 2.7e-27%2C32.5%25 id in 329 aa gene gene759 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0758 YPO0759 YPO0759 YPO0759 813844 815214 + Sodium:sulfate symporter-family protein Similar to Haemophilus influenzae hypothetical protein HI0608 SW:Y608_HAEIN (Q57486) (461 aa) fasta scores: E(): 0%2C 58.1%25 id in 451 aa%2C and to Vibrio cholerae transporter%2C NadC VCA0025 TR:Q9KNE0 (EMBL:AE004346) (462 aa) fasta scores: E(): 0%2C 54.6%25 id in 454 aa gene gene760 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0759 YPO0760 YPO0760 YPO0760 815394 815807 - putative membrane protein Similar to Escherichia coli hypothetical protein YjaA SW:YJAA_ECOLI (P09162) (127 aa) fasta scores: E(): 9.2e-13%2C 41.7%25 id in 120 aa gene gene761 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0760 YPO0761 YPO0761 YPO0761 816351 816593 - hypothetical protein no significant database hits gene gene762 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0761 YPO0762 YPO0762 YPO0762 816868 821184 - conserved hypothetical protein Similar to Pseudomonas aeruginosa hypothetical protein PA2684 TR:AAG06072 (EMBL:AE004696) (1317 aa) fasta scores: E(): 3.9e-30%2C 27.3%25 id in 1251 aa%2C and to Escherichia coli putative rhs protein RhsD SW:RHSD_ECOLI (P16919) (1426 aa) fasta scores: E(): 1e-24%2C 26.5%25 id in 1288 aa. The CDS has an extension at the N-terminal end in comparison to other orthologues%2C possible alternative translational starts gene gene763 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0762 YPO0763 YPO0763 YPO0763 821198 822517 - hypothetical protein Poor database hits. C-terminal region of CDS is similar to N-terminal region of Deinococcus radiodurans possible carboxypeptidase DR2423 TR:Q9RRR3 (EMBL:AE002072) (503 aa) fasta scores: E(): 9.2%2C 21.9%25 id in 274 aa gene gene764 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0763 YPO0764 YPO0764 YPO0764 822543 824768 - conserved hypothetical protein Similar to Escherichia coli hypothetical protein VgrG TR:O52672 (EMBL:AF044503) (713 aa) fasta scores: E(): 0%2C 43.2%25 id in 713 aa%2C and to Vibrio cholerae hypothetical protein VC1416 TR:Q9KS45 (EMBL:AE004220) (1163 aa) fasta scores: E(): 0%2C 39.1%25 id in 701 aa. Similar to the C-terminal regions of YPO3606 (77.2%25 identity in 615 aa overlap) and YPO3613 (76.2%25 identity in 621 aa overlap) gene gene765 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0764 YPO0765 YPO0765 YPO0765 825357 829117 - putative adhesin (pseudogene) Similar to Escherichia coli adhesin AIDA-I SW:AIDA_ECOLI (Q03155) (1286 aa) fasta scores: E(): 6.2e-14%2C 23.7%25 id in 1272 aa%2C and to Yersinia pestis protein YapD TR:CAC14223 (EMBL:AJ277627) (1457 aa) fasta scores: E(): 1.2e-12%2C 24.5%25 id in 1218 aa. Similar to YPO1672 (82.4%25 identity in 1206 aa overlap) and YPO0309 (81.1%25 identity in 1199 aa overlap). Contains a frameshift after codon 552. The sequence has been checked and is believed to be correct pseudogene gene766 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0765 YPO0767 YPO0767 gntP gntP 830118 831461 - putative gluconate transporter Similar to Escherichia coli high-affinity gluconate transporter GntP SW:GNTP_ECOLI (P39373) (447 aa) fasta scores: E(): 0%2C 82.7%25 id in 445 aa%2C and to Escherichia coli high-affinity gluconate transporter GntT SW:GNTT_ECOLI (P39835) (437 aa) fasta scores: E(): 0%2C 41.7%25 id in 439 aa gene gene767 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0767 YPO0768 YPO0768 YPO0768 833001 833399 + hypothetical protein no significant database hits gene gene768 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0768 YPO0769 YPO0769 YPO0769 833835 834710 + putative exported protein Similar to Salmonella typhimurium hypothetical protein SinI TR:Q9XCJ0 (EMBL:AF140550) (319 aa) fasta scores: E(): 3.2e-05%2C 27.3%25 id in 326 aa gene gene769 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0769 YPO0770 YPO0770 YPO0770 835033 836790 - ABC-transporter transmembrane protein Similar to Yersinia enterocolitica%2Chigh-pathogenicity island%2C lipoprotein inner membrane ABC-transporter%2C Irp6 TR:Q9X9I5 (EMBL:AJ132668) (600 aa) fasta scores: E(): 0%2C 30.8%25 id in 582 aa%2C and to Yersinia pestis hypothetical protein YbtQ TR:Q9Z375 (EMBL:AL031866) (600 aa) fasta scores: E(): 0%2C 33.7%25 id in 594 aa gene gene770 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0770 YPO0771 YPO0771 YPO0771 836783 838555 - ABC-transporter transmembrane protein Similar to Yersinia enterocolitica%2Chigh-pathogenicity island%2C lipoprotein inner membrane ABC-transporter%2C Irp6 TR:Q9X9I5 (EMBL:AJ132668) (600 aa) fasta scores: E(): 0%2C 32.4%25 id in 574 aa%2C and to Yersinia pestis hypothetical protein protein YbtP TR:Q9R7V3 (EMBL:AL031866) (600 aa) fasta scores: E(): 0%2C 32.6%25 id in 574 aa gene gene771 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0771 YPO0772 YPO0772 YPO0772 838555 839859 - putative membrane protein Similar to Yersinia enterocolitica%2Chigh-pathogenicity island%2C signal transducer protein Irp8 TR:Q9X9I7 (EMBL:AJ132668) (462 aa) fasta scores: E(): 3.9e-22%2C 27.9%25 id in 416 aa%2C and to Yersinia pestis protein hypothetical protein YbtX TR:Q9ZC28 (EMBL:AL031866) (462 aa) fasta scores: E(): 8e-22%2C 27.1%25 id in 421 aa gene gene772 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0772 YPO0773 YPO0773 YPO0773 839849 840613 - putative thioesterase Similar to Pseudomonas aeruginosa probable pyochelin biosynthetic protein PchC TR:AAG07617 (EMBL:AE004840) (251 aa) fasta scores: E(): 1.1e-30%2C 38.6%25 id in 236 aa%2C and to C-terminus of Streptomyces griseus probable cadicidin biosynthesis thioesterase SW:PABT_STRGR (P33586) (361 aa) fasta scores: E(): 6e-25%2C 36.4%25 id in 225 aa gene gene773 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0773 YPO0774 YPO0774 YPO0774 840606 841733 - conserved hypothetical protein Similar to Yersinia enterocolitica high-pathogenicity island protein Irp3 TR:O54512 (EMBL:Y12527) (365 aa) fasta scores: E(): 3.6e-30%2C 33.7%25 id in 362 aa%2C and to Yersinia pestis YbtU protein ybtU TR:Q9Z3C6 (EMBL:AL031866) (365 aa) fasta scores: E(): 3.6e-30%2C 33.8%25 id in 364 aa gene gene774 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0774 YPO0775 YPO0775 YPO0775 841730 842806 - conserved hypothetical protein Similar to Corynebacterium diphtheriae DtxR/iron-regulated protein 2 Irp2 TR:Q46024 (EMBL:U02634) (369 aa) fasta scores: E(): 2.2e-06%2C 23.3%25 id in 339 aa. N-terminal region similar to N-terminus of Pseudomonas aeruginosa hypothetical protein PA4362 TR:AAG07750 (EMBL:AE004852) (352 aa) fasta scores: E(): 0.054%2C 27.8%25 id in 209 aa gene gene775 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0775 YPO0776 YPO0776 YPO0776 842803 848622 - putative siderophore biosysnthesis protein Similar to N-terminus of Yersinia pestis yersiniabactin biogenesis protein Irp2 TR:Q9Z399 (EMBL:AL031866) (2041 aa) fasta scores: E(): 0%2C 31.1%25 id in 1659 aa%2C and to Pseudomonas aeruginosa pyochelin synthetase PchF TR:Q9RFM7 (EMBL:AF184622) (1809 aa) fasta scores: E(): 0%2C 34.1%25 id in 1957 aa. and to Vibrio anguillarum anguibactin biosynthesis protein AngR SW:ANGR_VIBAN (P19828) (1048 aa) fasta scores: E(): 0%2C 32.1%25 id in 844 aa. CDS contains a glutamine and threonine rich imperfect repeat region%2C residues 996 to 1065 gene gene776 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0776 YPO0777 YPO0777 YPO0777 848635 850287 - putative siderophore biosysnthesis protein Similar to the C-terminus of Vibrio anguillarum anguibactin biosynthesis protein AngR SW:ANGR_VIBAN (P19828) (1048 aa) fasta scores: E(): 0%2C 40.7%25 id in 553 aa. N-terminus of the CDS is similar to an internal region of Yersinia pestis yersiniabactin biogenesis protein Irp2 TR:Q9Z399 (EMBL:AL031866) (2041 aa) fasta scores: E(): 0%2C45.1%25 id in 439 aa gene gene777 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0777 YPO0778 YPO0778 YPO0778 850331 856936 - putative siderophore biosysnthesis protein Similar to Yersinia pestis yersiniabactin biogenesis protein Irp2 TR:Q9Z399 (EMBL:AL031866) (2041 aa) fasta scores: E(): 0%2C 36.8%25 id in 2031 aa%2C and to C-terminus of Stigmatella aurantiaca myxothiazol biosynthetic protein MtaD TR:Q9RFK8 (EMBL:AF188287) (3291 aa) fasta scores: E(): 0%2C 32.0%25 id in 1435 aa gene gene778 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0778 YPO0779 YPO0779 ypmt1.57c ypmt1.57c 856997 857779 - insertion sequence IS100%2C ATP-binding protein Similar to Escherichia coli insertion sequence IS21 putative ATP-binding protein%2C IstB SW:ISTB_ECOLI (P15026) (265 aa) fasta scores: E(): 0%2C 47.4%25 id in 249 aa. Also almost identical to Yersinia pestis and Escherichia coli putative IS100 transposase ypmt1.57c TR:Q9R3L5 (EMBL:AL117211) (260 aa) fasta scores: E(): 0%2C 99.6%25 id in 260 aa. gene gene779 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0779 YPO0780 YPO0780 y1093 y1093 857776 858798 - transposase for insertion sequence IS100 Similar to Escherichia coli transposase for insertion sequence element IS21 IstA SW:ISTA_ECOLI (P15025) (390 aa) fasta scores: E(): 3e-27%2C 33.1%25 id in 329 aa. Identical to the previously sequenced Yersinia pestis%2CYersinia pseudotuberculosis%2C and Escherichia coli pesticin plasmid insertion sequence transposase Y1055 TR:P74993 (EMBL:U59875) (340 aa) fasta scores: E(): 0%2C 100.0%25 id in 340 aa gene gene780 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0780 YPO0781 YPO0781 YPO0781 858883 859233 - putative surface structure protein (pseudo) Similar to N-terminal regions of Escherichia coli prepilin peptidase dependent protein A PpdA SW:PPDA_ECOLI (P33554) (156 aa) fasta scores: E(): 0.0018%2C 26.7%25 id in 101 aa%2C and Pseudomonas aeruginosa fimbrial protein precursor FimU TR:Q59652 (EMBL:L48934) (168 aa) fasta scores: E(): 0.27%2C 29.1%25 id in 86 aa. This CDS is disrupted by the insertion of IS100 element. The insertion occurred near the C-terminus. It is not clear whether this insertion affects the function of the protein. pseudogene gene781 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0781 YPO0782 YPO0782 YPO0782 859268 859486 - putative membrane protein Poor database matches. Doubtful CDS gene gene782 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0782 YPO0783 YPO0783 thyA thyA 859517 860311 - thymidylate synthase Similar to Escherichia coli thymidylate synthase ThyA SW:TYSY_ECOLI (P00470) (264 aa) fasta scores: E(): 0%2C88.6%25 id in 264 aa%2C and to Shigella flexneri thymidylate synthase ThyA SW:TYSY_SHIFL (P48464) (264 aa) fasta scores: E(): 0%2C 86.7%25 id in 264 aa. The Escherichia coli thymidylate synthase binds to its own mRNA%2C repressing translation thus leading to negative autoregulation. gene gene783 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0783 YPO0784 YPO0784 lgt lgt 860318 861190 - prolipoprotein diacylglyceryl transferase Similar to Salmonella typhimurium lipoprotein biogenesis protein%2C prolipoprotein diacylglyceryl transferase Lgt SW:LGT_SALTY (Q07293) (291 aa) fasta scores: E(): 0%2C 80.1%25 id in 292 aa%2C and to Escherichia coli prolipoprotein diacylglyceryl transferase Lgt SW:LGT_ECOLI (P37149) (291 aa) fasta scores: E(): 0%2C 77.7%25 id in 292 aa gene gene784 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0784 YPO0785 YPO0785 ptsP ptsP 861441 863687 - phosphoenolpyruvate-protein phosphotransferase Similar to Escherichia coli phosphoenolpyruvate-protein phosphotransferase PtsP SW:PT1P_ECOLI (P37177) (748 aa) fasta scores: E(): 0%2C 79.3%25 id in 747 aa%2C and to Vibrio cholerae phosphoenolpyruvate-protein phosphotransferase VC0672 TR:Q9KU52 (EMBL:AE004153) (748 aa) fasta scores: E(): 0%2C51.2%25 id in 752 aa. Escherichia coli protein also possesses a putative sensory transduction domain and is possible transcriptional regulator. gene gene785 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0785 YPO0786 YPO0786 YPO0786 863700 864227 - conserved hypothetical protein Similar to Escherichia coli hypothetical protein YgdP SW:YGDP_ECOLI (Q46930) (176 aa) fasta scores: E(): 0%2C85.8%25 id in 176 aa%2C and to Vibrio cholerae probable nucleoside polyphosphate hydrolase VC0671 TR:Q9KU53 (EMBL:AE004153) (193 aa) fasta scores: E(): 0%2C 78.1%25 id in 160 aa gene gene786 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0786 YPO0787 YPO0787 YPO0787 864253 864504 - hypothetical protein doubtful CDS with no significant database hits gene gene787 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0787 YPO0788 YPO0788 YPO0788 864501 864692 - hypothetical protein doubtful CDS with no significant database hits gene gene788 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0788 YPO0789 YPO0789 mutH mutH 864925 865611 + DNA mismatch repair protein Similar to Escherichia coli DNA mismatch repair protein MutH SW:MUTH_ECOLI (P06722) (228 aa) fasta scores: E(): 0%2C 72.7%25 id in 220 aa%2C and to Vibrio cholerae DNA mismatch repair protein VC0668 TR:Q9KU56 (EMBL:AE004153) (221 aa) fasta scores: E(): 0%2C 64.3%25 id in 221 aa gene gene789 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0789 YPO0790 YPO0790 tas tas 865946 866986 + putative aldo/keto reductase-family protein Similar to Escherichia coli putative aldo-keto reductase protein Tas SW:TAS_ECOLI (Q46933) (346 aa) fasta scores: E(): 0%2C 77.7%25 id in 346 aa%2C and to Vibrio cholerae oxidoreductase Tas%2C aldo/keto reductase family VC0667 TR:Q9KU57 (EMBL:AE004153) (352 aa) fasta scores: E(): 0%2C66.9%25 id in 347 aa gene gene790 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0790 YPO0791 YPO0791 YPO0791 867363 867788 - hypothetical protein no significant database hits. CDS DNA has a low G+C content%2C 40.61%25 gene gene791 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0791 YPO0792 YPO0792 ygeD ygeD 867955 869175 - putative membrane protein Similar to Escherichia coli hypothetical protein YgeD SW:YGED_ECOLI (P39196) (397 aa) fasta scores: E(): 0%2C74.3%25 id in 397 aa%2C and to Chlamydia muridarum hypothetical protein TC0009 TR:Q9PLT6 (EMBL:AE002269) (559 aa) fasta scores: E(): 2.3e-13%2C 27.7%25 id in 404 aa gene gene792 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0792 YPO0793 YPO0793 aas aas 869172 871328 - Aas bifunctional protein Similar to Escherichia coli bifunctional protein%2C2-Acylglycerophosphoethanolamine [2-acyl-GPE] acyltransferase and acyl-acyl carrier protein [acyl-ACP] synthase activities%2C Aas SW:AAS_ECOLI (P31119) (719 aa) fasta scores: E(): 0%2C 70.8%25 id in 715 aa%2C and to Rickettsia prowazekii 2-acylglycerophosphoethanolamine acyltransferase RP620 TR:Q9ZCU1 (EMBL:AJ235272) (1152 aa) fasta scores: E(): 0%2C 38.4%25 id in 724 aa gene gene793 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0793 YPO0794 YPO0794 bisC bisC 871777 874038 - putative biotin sulfoxide reductas2 Similar to Rhodobacter sphaeroides biotin sulfoxide reductase BisC SW:BISC_RHOSH (P54934) (744 aa) fasta scores: E(): 0%2C 49.0%25 id in 725 aa%2C and to Mycobacterium tuberculosis possible biotin sulfoxide reductase BisC TR:O06817 (EMBL:Z95844) (766 aa) fasta scores: E(): 0%2C42.7%25 id in 752 aa gene gene794 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0794 YPO0795 YPO0795 galR galR 874348 875370 + galactose operon repressor Similar to Escherichia coli galactose operon repressor GalR SW:GALR_ECOLI (P03024) (343 aa) fasta scores: E(): 0%2C 80.7%25 id in 332 aa%2C and to Vibrio cholerae LacI-family transcriptional regulator VC2337 TR:Q9KPM9 (EMBL:AE004303) (335 aa) fasta scores: E(): 0%2C 59.1%25 id in 330 aa gene gene795 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0795 YPO0796 YPO0796 lysA lysA 875367 876629 - diaminopimelate decarboxylase Similar to Escherichia coli diaminopimelate decarboxylase LysA SW:DCDA_ECOLI (P00861) (420 aa) fasta scores: E(): 0%2C 77.3%25 id in 418 aa%2C and to Streptomyces coelicolor diaminopimelate decarboxylase LysA SW:DCDA_STRCO (Q9ZBH5) (440 aa) fasta scores: E(): 0%2C 65.7%25 id in 405 aa gene gene796 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0796 YPO0797 YPO0797 lysR lysR 876844 877785 + transcriptional activator protein LysR Similar to Escherichia coli transcriptional activator protein LysR SW:LYSR_ECOLI (P03030) (311 aa) fasta scores: E(): 0%2C 67.9%25 id in 312 aa%2C and to Agrobacterium tumefaciens regulatory protein NocR SW:NOCR_AGRT5 (Q00678) (300 aa) fasta scores: E(): 4e-25%2C32.2%25 id in 289 aa gene gene797 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0797 YPO0798 YPO0798 YPO0798 877782 878942 - putative sugar transport protein Similar to Pseudomonas aeruginosa probable MFS transporter PA4355 TR:AAG07743 (EMBL:AE004851) (388 aa) fasta scores: E(): 0%2C 70.2%25 id in 376 aa%2C and to Streptomyces violaceus chloramphenicol resistance protein CmlV TR:Q56147 (EMBL:U09991) (436 aa) fasta scores: E(): 0%2C41.9%25 id in 377 aa gene gene798 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0798 YPO0799 YPO0799 YPO0799 879311 880219 - LysR-family transcriptional regulatory protein Similar to Vibrio cholerae LysR-family transcriptional regulator VCA1055 TR:Q9KKP7 (EMBL:AE004431) (307 aa) fasta scores: E(): 0%2C 38.7%25 id in 297 aa%2C and to Synechocystis sp. transcriptional regulator SLR1245 TR:P73778 (EMBL:D90909) (302 aa) fasta scores: E(): 2.2e-32%2C 34.1%25 id in 302 aa gene gene799 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0799 YPO0800 YPO0800 YPO0800 880326 881213 + putative exported protein Similar to Pseudomonas aeruginosa hypothetical protein PA0057 TR:AAG03447 (EMBL:AE004445) (295 aa) fasta scores: E(): 0%2C 57.9%25 id in 290 aa%2C and to Xylella fastidiosa hypothetical protein XF2283 TR:Q9PB61 (EMBL:AE004040) (317 aa) fasta scores: E(): 0%2C 53.8%25 id in 266 aa gene gene800 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0800 YPO0801 YPO0801 YPO0801 881326 881961 + conserved hypothetical protein Similar to Pseudomonas aeruginosa hypothetical protein PA0058 TR:AAG03448 (EMBL:AE004445) (234 aa) fasta scores: E(): 0%2C 54.1%25 id in 205 aa%2C and to Vibrio cholerae hypothetical protein VCA0901 TR:Q9KL47 (EMBL:AE004418) (209 aa) fasta scores: E(): 2.9e-19%2C 33.3%25 id in 207 aa gene gene801 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0801 YPO0802 YPO0802 cheD cheD 881947 883590 - putative methyl-accepting chemotaxis protein Similar to Escherichia coli methyl-accepting chemotaxis protein I CheD SW:MCP1_ECOLI (P02942) (551 aa) fasta scores: E(): 0%2C 40.2%25 id in 537 aa%2C and to Enterobacter aerogenes methyl-accepting chemotaxis serine transducer Tse SW:MCPS_ENTAE (P21822) (557 aa) fasta scores: E(): 0%2C 40.5%25 id in 523 aa gene gene802 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0802 YPO0803 YPO0803 YPO0803 883793 884194 - hypothetical protein no significant database hits gene gene803 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0803 YPO0804 YPO0804 YPO0804 884191 884907 - putative regulatory membrane protein Similar to Vibrio cholerae toxin corregulated pilus biosynthesis protein TcpP SW:TCPP_VIBCH (P29485) (221 aa) fasta scores: E(): 1.5e-05%2C 28.7%25 id in 181 aa%2C N-terminus is similar to the N-terminus of Vibrio fischeri transmembrane transcriptional activator ToxR TR:Q56689 (EMBL:L29053) (316 aa) fasta scores: E(): 8.5e-05%2C 36.6%25 id in 101 aa gene gene804 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0804 YPO0805 YPO0805 YPO0805 885191 885496 + putative lipoprotein Similar to Klebsiella pneumoniae pullulanase secretion protein PulS SW:PULS_KLEPN (P20440) (125 aa) fasta scores: E(): 0.0042%2C 28.9%25 id in 97 aa%2C and to enterohemorrhagic Escherichia coli (EHEC) O157:H7 large virulence plasmid (pO157) protein EtpO TR:O32577 (EMBL:Y09824) (133 aa) fasta scores: E(): 0.0045%2C 32.9%25 id in 79 aa gene gene805 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0805 YPO0806 YPO0806 YPO0806 885548 886390 - prepilin peptidase Similar to Erwinia carotovora type 4 prepilin-like proteins leader peptide processing enzyme OutO SW:LEP4_ERWCA (P31712) (279 aa) fasta scores: E(): 0%2C 42.3%25 id in 265 aa%2C and to Aeromonas salmonicida type 4 prepilin-like proteins leader peptide processing enzyme TapD SW:LEP4_AERSA (O68964) (291 aa) fasta scores: E(): 0%2C42.2%25 id in 277 aa gene gene806 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0806 YPO0807 YPO0807 YPO0807 886416 886877 - putative membrane protein Poor database matches. Similar to Amsacta moorei entomopoxvirus protein AMV030 TR:AAG02736 (EMBL:AF250284) (144 aa) fasta scores: E(): 5.4%2C 22.9%25 id in 118 aa%2C and similar to the N-terminual region of Amsacta moorei entomopoxvirus protein AMV212 TR:AAG02918 (EMBL:AF250284) (284 aa) fasta scores: E(): 10%2C 29.1%25 id in 127 aa gene gene807 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0807 YPO0808 YPO0808 YPO0808 886874 888043 - general secretion pathway protein L Similar to Aeromonas hydrophila general secretion pathway protein L ExeL SW:GSPL_AERHY (P45789) (389 aa) fasta scores: E(): 1.8e-20%2C 23.3%25 id in 347 aa%2C and to Erwinia chrysanthemi general secretion pathway protein L OutL SW:GSPL_ERWCH (P31707) (399 aa) fasta scores: E(): 1.2e-16%2C 20.5%25 id in 396 aa gene gene808 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0808 YPO0809 YPO0809 YPO0809 888048 889004 - general secretion pathway protein K Similar to Erwinia carotovora general secretion pathway protein K OutK SW:GSPK_ERWCA (P31706) (328 aa) fasta scores: E(): 0.00012%2C 22.6%25 id in 327 aa%2C and to Klebsiella pneumoniae general secretion pathway protein K PulK SW:GSPK_KLEPN (P15750) (326 aa) fasta scores: E(): 0.0012%2C 25.4%25 id in 323 aa gene gene809 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0809 YPO0810 YPO0810 YPO0810 889013 889609 - general secretion pathway protein J Similar to Aeromonas hydrophila general secretion pathway protein J ExeJ SW:GSPJ_AERHY (P31739) (207 aa) fasta scores: E(): 1.1e-14%2C 30.3%25 id in 198 aa%2C and to enterohemorrhagic Escherichia coli (EHEC) O157:H7 large virulence plasmid (pO157) protein EtpJ TR:O32572 (EMBL:Y09824) (199 aa) fasta scores: E(): 2.1e-16%2C 31.9%25 id in 191 aa gene gene810 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0810 YPO0811 YPO0811 YPO0811 889602 889946 - general secretion pathway protein I Similar to Aeromonas hydrophila general secretion pathway protein I ExeI SW:GSPI_AERHY (P31737) (119 aa) fasta scores: E(): 4.3e-15%2C 41.2%25 id in 102 aa%2C and to Erwinia chrysanthemi general secretion pathway protein I precursor OutI SW:GSPI_ERWCH (P24688) (125 aa) fasta scores: E(): 8.1e-13%2C 34.9%25 id in 109 aa gene gene811 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0811 YPO0812 YPO0812 YPO0812 889984 890526 - general secretion pathway protein H Similar to Erwinia chrysanthemi general secretion pathway protein H OutH SW:GSPH_ERWCH (P24687) (181 aa) fasta scores: E(): 0.13%2C 20.2%25 id in 178 aa%2C and to enterohemorrhagic Escherichia coli (EHEC) O157:H7 large virulence plasmid (pO157) protein EtpH TR:O32570 (EMBL:Y09824) (184 aa) fasta scores: E(): 0.084%2C 20.8%25 id in 183 aa gene gene812 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0812 YPO0813 YPO0813 YPO0813 890531 890968 - general secretion pathway protein G Similar to Erwinia carotovora general secretion pathway protein G OutG SW:GSPG_ERWCA (P31586) (156 aa) fasta scores: E(): 0%2C 69.9%25 id in 133 aa%2C and to Erwinia chrysanthemi general secretion pathway protein G OutG SW:GSPG_ERWCH (P31585) (153 aa) fasta scores: E(): 0%2C 67.9%25 id in 134 aa gene gene813 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0813 YPO0814 YPO0814 YPO0814 890991 892189 - general secretion pathway protein F (pseudogene) Similar to Erwinia carotovora general secretion pathway protein F OutF SW:GSPF_ERWCA (P31705) (408 aa) fasta scores: E(): 0%2C 42.4%25 id in 406 aa%2C and to Erwinia chrysanthemi general secretion pathway protein F OutF SW:GSPF_ERWCH (P31704) (404 aa) fasta scores: E(): 0%2C 40.9%25 id in 406 aa. Contains a frameshift after codon 59. Possible deletion in this region. The sequence has been checked and is believed to be correct pseudogene gene814 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0814 YPO0815 YPO0815 YPO0815 892176 893687 - general secretion pathway protein E Similar to Erwinia carotovora general secretion pathway protein E OutE SW:GSPE_ERWCA (P31703) (498 aa) fasta scores: E(): 0%2C 56.0%25 id in 502 aa%2C and to enterohemorrhagic Escherichia coli (EHEC) O157:H7 large virulence plasmid (pO157) protein EtpE TR:O82884 (EMBL:AB011549) (501 aa) fasta scores: E(): 0%2C 56.6%25 id in 484 aa gene gene815 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0815 YPO0816 YPO0816 YPO0816 893684 895606 - general secretion pathway protein D Similar to Klebsiella pneumoniae general secretion pathway protein D GspD SW:GSPD_KLEPN (P15644) (660 aa) fasta scores: E(): 0%2C 48.9%25 id in 640 aa%2C and to Aeromonas salmonicida general secretion pathway protein D ExeD SW:GSPD_AERSA (P45778) (678 aa) fasta scores: E(): 0%2C 47.1%25 id in 633 aa. The CDS contains an internal deletion relative to other orthologues around codon 380. The effect on function is unknown. gene gene816 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0816 YPO0817 YPO0817 YPO0817 895687 896190 - general secretion pathway protein C Similar to N-terminal regions of Aeromonas hydrophila general secretion pathway protein C ExeC SW:GSPC_AERHY (P45790) (290 aa) fasta scores: E(): 0.013%2C24.3%25 id in 144 aa%2C and to Aeromonas salmonicida general secretion pathway protein C ExeC SW:GSPC_AERSA (P45772) (290 aa) fasta scores: E(): 0.12%2C 23.6%25 id in 144 aa. CDS is truncated relative orthologues%2C effect on function unknown. gene gene817 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0817 YPO0818 YPO0818 YPO0818 896258 896674 - hypothetical protein Poor database hits. Weakly similar to internal region of Salmonella typhimurium putative transcriptional regulator MarT TR:Q9Z623 (EMBL:AF106566) (285 aa) fasta scores: E(): 4%2C 29.7%25 id in 74 aa gene gene818 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0818 YPO0819 YPO0819 YPO0819 897417 898172 - putative carbonic anhydrase Similar to Chlamydomonas reinhardtii beta-carbonic anhydrase CA1 TR:P93108 (EMBL:U80804) (267 aa) fasta scores: E(): 1.8e-17%2C 39.0%25 id in 223 aa%2C and to Salmonella typhimurium putative carbonic anhydrase Mig-5 TR:O30898 (EMBL:AF020806) (246 aa) fasta scores: E(): 0%2C 60.9%25 id in 243 aa gene gene819 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0819 YPO0820 YPO0820 YPO0820 898548 898856 + hypothetical protein no significant database hits gene gene820 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0820 YPO0821 YPO0821 YPO0821 899243 899437 + hypothetical protein no significant database hits gene gene821 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0821 YPO0822 YPO0822 YPO0822 899459 900409 + putative exported protein Poor database matches to the full length CDS. Similar to enterohemorrhagic Escherichia coli O157:H7 outer membrane protein OmpG TR:AAG56483 (EMBL:AE005375) (301 aa) fasta scores: E(): 6.3%2C 20.6%25 id in 325 aa gene gene822 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0822 YPO0823 YPO0823 YPO0823 900524 902710 + putative exported protein Similar to internal regions of Serratia marcescens serine protease homologue SSP-H2 TR:Q54484 (EMBL:D78380) (1034 aa) fasta scores: E(): 2e-10%2C 21.9%25 id in 725 aa%2C and to Pseudomonas fluorescens probable serine protease PrtB TR:Q9KJ18 (EMBL:AF216702) (1036 aa) fasta scores: E(): 1.2e-13%2C 23.1%25 id in 654 aa gene gene823 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0823 YPO0824 YPO0824 YPO0824 902780 905893 + putative exported protein C-terminus of CDS is similar to Bacteroides thetaiotaomicron lyase 2 TR:Q45773 (EMBL:L42367) (645 aa) fasta scores: E(): 0%2C 35.9%25 id in 604 aa%2C and internal region of Streptomyces griseus hyaluronidase Hya TR:Q9WXL3 (EMBL:AB028210) (721 aa) fasta scores: E(): 7.2e-06%2C 25.3%25 id in 617 aa gene gene824 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0824 YPO0824A YPO0824A tnp tnp 908129 908530 + transposase (pseudogene) This CDS has been disrupted by the insertion of IS100. Identical to Yersinia pseudotuberculosis transposase Tnp TR:Q9X9F5 (EMBL:AJ238014) (152 aa) fasta scores: E(): 5.3e-67%2C 100.000%25 id in 152 aa pseudogene gene825 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0824A YPO0825 YPO0825 ypmt1.57c ypmt1.57c 906238 907020 - insertion sequence IS100%2C ATP-binding protein Similar to Escherichia coli insertion sequence IS21 putative ATP-binding protein%2C IstB SW:ISTB_ECOLI (P15026) (265 aa) fasta scores: E(): 0%2C 47.4%25 id in 249 aa. Also almost identical to Yersinia pestis and Escherichia coli putative IS100 transposase ypmt1.57c TR:Q9R3L5 (EMBL:AL117211) (260 aa) fasta scores: E(): 0%2C 99.6%25 id in 260 aa. gene gene826 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0825 YPO0826 YPO0826 y1093 y1093 907017 908039 - transposase for insertion sequence IS100 Similar to Escherichia coli transposase for insertion sequence element IS21 IstA SW:ISTA_ECOLI (P15025) (390 aa) fasta scores: E(): 3e-27%2C 33.1%25 id in 329 aa. Identical to the previously sequenced Yersinia pestis%2CYersinia pseudotuberculosis%2C and Escherichia coli pesticin plasmid insertion sequence transposase Y1055 TR:P74993 (EMBL:U59875) (340 aa) fasta scores: E(): 0%2C 100.0%25 id in 340 aa gene gene827 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0826 YPO0829 YPO0829 YPO0829 908982 910535 - putative sulfatase Similar to Prevotella sp RS2 mucin-desulfating sulfatase MdsA TR:Q9L5W0 (EMBL:AF248951) (517 aa) fasta scores: E(): 2e-12%2C 25.9%25 id in 486 aa%2C and to Homo sapiens iduronate 2-sulfatase precursor SW:IDS_HUMAN (P22304) (550 aa) fasta scores: E(): 9.3e-11%2C 26.8%25 id in 463 aa gene gene828 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0829 YPO0831 YPO0831 YPO0831 911375 912151 + DeoR-family regulatory protein Similar to Escherichia coli galactitol utilization operon repressor GatR SW:GATR_ECOLI (P36930) (259 aa) fasta scores: E(): 2.9e-27%2C 39.0%25 id in 254 aa%2C and to Escherichia coli putative aga operon transcriptional repressor AgaR SW:AGAR_ECOLI (P42902) (269 aa) fasta scores: E(): 0%2C 46.7%25 id in 255 aa gene gene829 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0831 YPO0832 YPO0832 agaZ agaZ 912201 913499 + putative tagatose 6-phosphate kinase Similar to Escherichia coli putative tagatose 6-phosphate kinase AgaZ SW:AGAZ_ECOLI (P42903) (426 aa) fasta scores: E(): 0%2C 63.6%25 id in 423 aa%2C and to Streptomyces coelicolor tagatose 6-phosphate kinase AgaZ TR:O50522 (EMBL:AL009204) (435 aa) fasta scores: E(): 0%2C57.2%25 id in 418 aa gene gene830 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0832 YPO0833 YPO0833 YPO0833 913496 914662 + putative phosphosugar isomerase Similar to Drosophila melanogaster glucosamine--fructose-6-phosphate aminotransferase GfaT TR:Q9Y093 (EMBL:Y18628) (694 aa) fasta scores: E(): 0.00036%2C 22.3%25 id in 363 aa%2C and to Escherichia coli putative tagatose-6-phosphate ketose/aldose isomerase AgaS SW:AGAS_ECOLI (P42907) (384 aa) fasta scores: E(): 0%2C 48.0%25 id in 373 aa gene gene831 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0833 YPO0834 YPO0834 manX manX 914680 915177 + putative PTS transport protein Similar to Vibrio furnissii phosphenolpyruvate-dependent sugar phosphotransferase system (PTS) permease for mannose subunit IIIMan C-terminal domain%2C ManX TR:P96162 (EMBL:U65015) (157 aa) fasta scores: E(): 6.8e-31%2C 51.6%25 id in 159 aa%2C and to Escherichia coli PTS system%2C N-acetylgalactosamine-specific IIB component 2 AgaV SW:PTPV_ECOLI (P42904) (157 aa) fasta scores: E(): 8.1e-29%2C 48.1%25 id in 158 aa gene gene832 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0834 YPO0835 YPO0835 YPO0835 915224 916012 + putative PTS permease protein Similar to Vibrio furnissii phosphenolpyruvate-dependent sugar phosphotransferase system (PTS) permease for mannose subunit IIPMman%2C ManY TR:P96163 (EMBL:U65015) (258 aa) fasta scores: E(): 0%2C41.2%25 id in 262 aa%2C and to Escherichia coli PTS dependent N-acetyl-galactosamine-IIC component AgaW TR:Q9KIQ3 (EMBL:AF228498) (259 aa) fasta scores: E(): 0%2C 41.2%25 id in 262 aa gene gene833 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0835 YPO0836 YPO0836 YPO0836 916002 916892 + putative PTS permease protein Similar to Vibrio furnissii phosphenolpyruvate-dependent sugar phosphotransferase system (PTS) permease for mannose subunit IIBMan ManZ TR:P96164 (EMBL:U65015) (293 aa) fasta scores: E(): 0%2C43.8%25 id in 272 aa%2C and to Escherichia coli PTS dependent N-acetyl-galactosamine- and galactosamine IIA component AgaE TR:Q9KIQ2 (EMBL:AF228498) (292 aa) fasta scores: E(): 0%2C 41.7%25 id in 266 aa gene gene834 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0836 YPO0837 YPO0837 YPO0837 916978 917418 + putative PTS permease protein Similar to Vibrio furnissii phosphenolpyruvate-dependent sugar phosphotransferase system (PTS) permease for mannose subunit IIIMan N-terminal domain%2C ManW TR:P96165 (EMBL:U65015) (146 aa) fasta scores: E(): 3.3e-18%2C 37.7%25 id in 146 aa%2C and to Escherichia coli PTS dependent N-acetyl-galactosamine- and galactosamine IIA component AgaF TR:Q9KIQ1 (EMBL:AF228498) (144 aa) fasta scores: E(): 1.4e-13%2C 37.4%25 id in 131 aa gene gene835 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0837 YPO0838 YPO0838 YPO0838 917421 918587 + putative acetylglucosamine-6-phosphate deacetylase Similar to Vibrio furnissii N-acetylglucosamine-6-phosphate deacetylase ManD SW:NAGA_VIBFU (P96166) (399 aa) fasta scores: E(): 0%2C 43.4%25 id in 373 aa%2C and to Escherichia coli N-acetyl-galactosamine-6-phosphate deacetylase AgaA TR:Q9KIQ0 (EMBL:AF228498) (384 aa) fasta scores: E(): 0%2C39.7%25 id in 378 aa gene gene836 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0838 YPO0839 YPO0839 kduD2 kduD2 918783 919538 + 2-deoxy-D-gluconate 3-dehydrogenase Similar to Escherichia coli 2-deoxy-D-gluconate 3-dehydrogenase KduD SW:KDUD_ECOLI (P37769) (253 aa) fasta scores: E(): 0%2C 68.1%25 id in 251 aa%2C and to Erwinia chrysanthemi 2-deoxy-D-gluconate 3-dehydrogenase KduD SW:KDUD_ERWCH (Q05528) (253 aa) fasta scores: E(): 0%2C 65.7%25 id in 251 aa. Similar to YPO1724 (68.1%25 identity in 251 aa overlap) gene gene837 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0839 YPO0840 YPO0840 YPO0840 919554 920612 + conserved hypothetical protein Similar to Bacillus halodurans conserved hypothetical protein BH0485 TR:Q9KFJ4 (EMBL:AP001508) (365 aa) fasta scores: E(): 1.9e-08%2C 23.9%25 id in 356 aa%2C and to Bacillus subtilis conserved hypothetical protein YteR TR:O34559 (EMBL:AF008220) (373 aa) fasta scores: E(): 5.3e-07%2C 25.3%25 id in 332 aa gene gene838 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0840 YPO0841 YPO0841 YPO0841 920856 922082 + putative regulatory protein Similar to Bacteroides thetaiotaomicron chondro-6-sulfatase regulatory protein ChuR SW:CHUR_BACTN (Q02550) (401 aa) fasta scores: E(): 0%2C 39.4%25 id in 381 aa%2Cand to Salmonella typhimurium LT2 hypothetical protein STMD1.23 TR:Q9L6N0 (EMBL:AF233324) (431 aa) fasta scores: E(): 0%2C 46.2%25 id in 396 aa gene gene839 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0841 YPO0842 YPO0842 YPO0842 922103 923710 + putative sulfatase Similar to Hemicentrotus pulcherrimus arylsulfatase SW:ARS_HEMPU (P14000) (551 aa) fasta scores: E(): 3e-19%2C28.5%25 id in 403 aa%2C and to Escherichia coli putative sulfatase YdeN SW:YDEN_ECOLI (P77318) (560 aa) fasta scores: E(): 0%2C 39.6%25 id in 508 aa gene gene840 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0842 YPO0843 YPO0843 YPO0843 923833 925320 + hypothetical protein Poor database hits. Weakly similar to internal region of Streptomyces coelicolor hypothetical protein SCF91.24 TR:Q9RJA0 (EMBL:AL132973) (631 aa) fasta scores: E(): 3.8e-24%2C 32.1%25 id in 361 aa gene gene841 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0843 YPO0844 YPO0844 agaY agaY 925429 926283 + putative aldolase Similar to Escherichia coli tagatose-bisphosphate aldolase AgaY SW:AGAY_ECOLI (P42908) (286 aa) fasta scores: E(): 0%2C 59.4%25 id in 283 aa%2C and to Vibrio furnissii putative aldolase ManF TR:P96167 (EMBL:U65015) (287 aa) fasta scores: E(): 0%2C 66.1%25 id in 283 aa gene gene842 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0844 YPO0845 YPO0845 YPO0845 926307 926885 + ThiJ/PfpI-family thiamine biogenesis protein Similar to Homo sapiens oncogenic protein DJ-1 TR:Q99497 (EMBL:D61380) (189 aa) fasta scores: E(): 2.2e-12%2C 32.7%25 id in 171 aa%2C and to Borrelia burgdorferi putative 4-methyl-5(b-hydroxyethyl)-thiazole monophosphate biosynthesis protein ThiJ BB0621 TR:O51566 (EMBL:AE001163) (184 aa) fasta scores: E(): 8.6e-17%2C 35.0%25 id in 160 aa gene gene843 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0845 YPO0846 YPO0846 YPO0846 927126 928208 - LacI-family regulatory protein Similar to Sphingomonas sp transcriptional regulator CcpA TR:Q9KWU0 (EMBL:AB011415) (353 aa) fasta scores: E(): 1.1e-20%2C 27.2%25 id in 342 aa%2C and to Vibrio cholerae LacI-family transcriptional repressor VC2677 TR:Q9KNQ4 (EMBL:AE004333) (335 aa) fasta scores: E(): 6.8e-16%2C 25.7%25 id in 338 aa gene gene844 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0846 YPO0847 YPO0847 YPO0847 928602 929909 + putative sugar transporter Similar to Escherichia coli hexuronate transport protein ExuT SW:EXUT_ECOLI (P42609) (472 aa) fasta scores: E(): 0%2C 47.0%25 id in 419 aa%2C and to Erwinia chrysanthemi probable galacturonate transport protein ExuT TR:P94774 (EMBL:U86689) (345 aa) fasta scores: E(): 0%2C 44.0%25 id in 332 aa gene gene845 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0847 YPO0848 YPO0848 YPO0848 930057 932435 + putative glucosidase Internal region of CDS similar internal region of Solanum tuberosum alpha-glucosidase TR:O24375 (EMBL:AJ001374) (919 aa) fasta scores: E(): 0%2C 28.9%25 id in 610 aa. Full length CDS similar to Bacillus halodurans hypothetical glucosidase BH0704 TR:Q9KEZ5 (EMBL:AP001509) (801 aa) fasta scores: E(): 0%2C 52.4%25 id in 757 aa gene gene846 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0848 YPO0849 YPO0849 lacI lacI 932764 933837 - lactose operon repressor Similar to Escherichia coli lactose operon repressor LacI SW:LACI_ECOLI (P03023) (360 aa) fasta scores: E(): 0%2C43.3%25 id in 353 aa%2C and to Klebsiella pneumoniae lactose operon repressor LacI SW:LACI_KLEPN (P06220) (354 aa) fasta scores: E(): 0%2C 43.9%25 id in 355 aa gene gene847 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0849 YPO0850 YPO0850 lamB lamB 934109 935368 + maltoporin Similar to Aeromonas salmonicida maltoporin LamB SW:LAMB_AERSA (Q44287) (445 aa) fasta scores: E(): 0%2C 44.7%25 id in 447 aa%2C and to Escherichia coli maltoporin LamB SW:LAMB_ECOLI (P02943) (446 aa) fasta scores: E(): 0%2C 33.5%25 id in 462 aa gene gene848 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0850 YPO0851 YPO0851 YPO0851 935741 936052 - PTS transport protein (partial) Probable gene remnant%2C similar to C-terminal regions of Escherichia coli phosphenolpyruvate-dependent sugar phosphotransferase system (PTS) glucose-specific IIBC component PtsG SW:PTGB_ECOLI (P05053) (477 aa) fasta scores: E(): 2.3e-11%2C 54.1%25 id in 74 aa%2C and to Salmonella typhimurium PTS system%2C glucose-specific IIBC component PtsG SW:PTGB_SALTY (P37439) (477 aa) fasta scores: E(): 4.3e-11%2C 52.7%25 id in 74 aa%3B~was marked partial gene gene849 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0851 YPO0852 YPO0852 bgaB bgaB 936164 938224 - puative beta-galactosidase Similar to Clostridium perfringens beta-galactosidase Pbg TR:Q59312 (EMBL:D49537) (676 aa) fasta scores: E(): 0%2C 51.4%25 id in 675 aa%2C and to Bacillus circulans beta-D-galactosidase BgaB TR:Q45093 (EMBL:L03425) (690 aa) fasta scores: E(): 0%2C 61.6%25 id in 685 aa gene gene850 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0852 YPO0853 YPO0853 YPO0853 938275 939477 - putative galactosidase Similar to Pseudomonas fluorescens arabinogalactan endo-1%2C4-beta-galactosidase GalA SW:GANA_PSEFL (P48841) (376 aa) fasta scores: E(): 0%2C 33.3%25 id in 387 aa%2C and to N-terminus of Thermotoga maritima putative arabinogalactan endo-1%2C4-beta-galactosidase TM1201 TR:Q9X0S8 (EMBL:AE001777) (606 aa) fasta scores: E(): 0%2C 50.3%25 id in 384 aa gene gene851 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0853 YPO0854 YPO0854 YPO0854 939482 940333 - putative maltodextrin permease protein Similar to Streptococcus pneumoniae maltodextrin transport system permease protein MalD SW:MALD_STRPN (Q04699) (277 aa) fasta scores: E(): 0%2C 42.0%25 id in 274 aa%2Cand to Bacillus halodurans hypothetical maltose/maltodextrin transport system BH2021 TR:Q9KBA7 (EMBL:AP001514) (283 aa) fasta scores: E(): 0%2C 69.6%25 id in 280 aa gene gene852 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0854 YPO0855 YPO0855 YPO0855 940345 941652 - putative maltodextrin transport permease Similar to Streptococcus pneumoniae maltodextrin transport system permease protein MalC SW:MALC_STRPN (Q04698) (430 aa) fasta scores: E(): 0%2C 45.5%25 id in 422 aa%2Cand to Bacillus subtilis hypothetical protein YvfL TR:O07010 (EMBL:Z94043) (421 aa) fasta scores: E(): 0%2C67.8%25 id in 419 aa gene gene853 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0855 YPO0856 YPO0856 YPO0856 941812 943074 - putative sugar-binding protein Similar to Streptococcus pneumoniae maltose/maltodextrin-binding protein MalX SW:MALX_STRPN (P29850) (423 aa) fasta scores: E(): 0%2C 33.9%25 id in 383 aa%2Cand to Bacillus subtilis hypothetical protein YvfK TR:O07009 (EMBL:Z94043) (421 aa) fasta scores: E(): 0%2C49.1%25 id in 401 aa gene gene854 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0856 YPO0857 YPO0857 YPO0857 943410 944510 + sugar transport ATP-binding protein Similar to Agrobacterium radiobacter lactose ABC transporter%2C ATP-binding protein LacK SW:LACK_AGRRD (Q01937) (363 aa) fasta scores: E(): 0%2C 55.6%25 id in 365 aa%2Cand to Escherichia coli maltose/maltodextrin ABC transporter%2C ATP-binding protein MalK SW:MALK_ECOLI (P02914) (371 aa) fasta scores: E(): 0%2C 52.1%25 id in 359 aa. Similar to YPO3712 (52.7%25 identity in 357 aa overlap)%2CYPO3469 (51.6%25 identity in 372 aa overlap) and YPO1896 (59.1%25 identity in 286 aa overlap). gene gene855 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0857 YPO0858 YPO0858 YPO0858 945059 946567 + sugar transport ATP-binding protein Similar to Escherichia coli ribose ABC transporter%2CATP-binding protein RbsA SW:RBSA_ECOLI (P04983) (501 aa) fasta scores: E(): 0%2C 43.0%25 id in 493 aa%2C and to Vibrio cholerae ribose ABC transporter%2C ATP-binding protein VCA0128 TR:Q9KN37 (EMBL:AE004354) (500 aa) fasta scores: E(): 0%2C 43.1%25 id in 490 aa gene gene856 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0858 YPO0859 YPO0859 YPO0859 946633 947643 + sugar transport system permease Similar to Escherichia coli ribose transport system permease protein RbsC SW:RBSC_ECOLI (P04984) (321 aa) fasta scores: E(): 0%2C 49.4%25 id in 312 aa%2C and to Vibrio cholerae ribose ABC transporter%2C permease protein VCA0129 TR:Q9KN36 (EMBL:AE004354) (332 aa) fasta scores: E(): 0%2C 52.4%25 id in 290 aa gene gene857 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0859 YPO0860 YPO0860 YPO0860 948078 949079 + sugar-binding periplasmic protein Similar to Escherichia coli D-ribose-binding periplasmic protein precursor RbsB SW:RBSB_ECOLI (P02925) (296 aa) fasta scores: E(): 2.2e-17%2C 32.5%25 id in 295 aa%2Cand to Bacillus halodurans sugar ABC transporter BH2323 TR:Q9KAG4 (EMBL:AP001515) (323 aa) fasta scores: E(): 2.6e-24%2C 36.3%25 id in 251 aa gene gene858 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0860 YPO0862 YPO0862 YPO0862 949858 950376 + putative exported protein No significant database matches to the full length CDS gene gene859 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0862 YPO0863 YPO0863 YPO0863 950752 951609 + putative lipoprotein Similar to Escherichia coli hypothetical lipoprotein YaeF SW:YAEF_ECOLI (P37056) (274 aa) fasta scores: E(): 0%2C43.1%25 id in 253 aa gene gene860 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0863 YPO0864 YPO0864 YPO0864 952033 952713 + conserved hypothetical protein Similar to Escherichia coli hypothetical protein YqjI SW:YQJI_ECOLI (Q46872) (207 aa) fasta scores: E(): 1.1e-17%2C 36.3%25 id in 201 aa gene gene861 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0864 YPO0865 YPO0865 YPO0865 952713 953033 + hypothetical protein no significant database hits gene gene862 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0865 YPO0866 YPO0866 YPO0866 953116 953421 - conserved hypothetical protein Similar to Pseudomonas aeruginosa hypothetical protein PA1508 TR:AAG04897 (EMBL:AE004579) (86 aa) fasta scores: E(): 9.6e-07%2C 39.5%25 id in 76 aa%2C and to Vibrio cholerae hypothetical protein VCA0105 TR:Q9KN60 (EMBL:AE004353) (94 aa) fasta scores: E(): 1%2C 28.4%25 id in 95 aa. Alternative translational start at codon 14 gene gene863 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0866 YPO0867 YPO0867 YPO0867 953638 954417 - putative membrane protein No significant database matches to the full length CDS. N-terminus similar to N-terminus of Aquifex aeolicus possible NADH dehydrogenase I chain M NUOM2 TR:O67390 (EMBL:AE000737) (501 aa) fasta scores: E(): 0.051%2C 23.8%25 id in 168 aa. Internal region of CDS is similar to internal region of Ureaplasma urealyticum hypothetical membrane lipoprotein UU384 TR:Q9PQA6 (EMBL:AE002136) (365 aa) fasta scores: E(): 0.37%2C 22.2%25 id in 203 aa gene gene864 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0867 YPO0868 YPO0868 YPO0868 954498 954710 - putative membrane protein No significant database matches gene gene865 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0868 YPO0869 YPO0869 YPO0869 955022 955738 - hypothetical protein No significant database hits to the full length CDS. Weakly similar to an internal region of Burkholderia pseudomallei hypothetical protein TR:Q9ZF74 (EMBL:AF110185) (541 aa) fasta scores: E(): 0.85%2C 29.2%25 id in 185 aa gene gene866 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0869 YPO0870 YPO0870 YPO0870 955759 958083 - conserved hypothetical protein Similar to Pseudomonas aeruginosa hypothetical protein PA5441 TR:AAG08826 (EMBL:AE004957) (733 aa) fasta scores: E(): 0%2C 33.9%25 id in 749 aa gene gene867 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0870 YPO0871 YPO0871 YPO0871 958328 958612 - putative colicin immunity protein Similar to Escherichia coli colicin D-157 immunity protein Cdi TR:O52990 (EMBL:Y10412) (87 aa) fasta scores: E(): 0.0034%2C 27.9%25 id in 86 aa. C-terminus is identical to YPO3653 (100.0%25 identity in 39 aa overlap). gene gene868 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0871 YPO0872 YPO0872 YPO0872 958659 958916 - hypothetical protein No significant database hits to the full length CDS. Weakly similar to the C-terminus of Bacillus subtilis hypothetical protein YxzC TR:O32286 (EMBL:Z99124) (122 aa) fasta scores: E(): 0.00019%2C 29.7%25 id in 74 aa gene gene869 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0872 YPO0873 YPO0873 YPO0873 959426 960964 - hypothetical protein Weakly similar to internal regions of Pseudomonas aeruginosa pyocin (killer protein) S1 SW:PYS1_PSEAE (Q06583) (617 aa) fasta scores: E(): 0.32%2C 24.6%25 id in 403 aa. Similar to the N-terminus of YPO1484 (62.1%25 identity in 124 aa overlap). gene gene870 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0873 YPO0874 YPO0874 YPO0874 961468 962610 - hypothetical protein Weakly similar to Halobacterium sp (strain NRC-1) hypothetical protein TR:AAG20974 (EMBL:AE005164) (424 aa) fasta scores: E(): 5.2e-07%2C 26.0%25 id in 362 aa%2C and to Neisseria meningitidis hypothetical protein NMB1759 TR:Q9JY39 (EMBL:AE002525) (454 aa) fasta scores: E(): 3.7e-05%2C 24.5%25 id in 330 aa gene gene871 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0874 YPO0875 YPO0875 YPO0875 962879 963244 + hypothetical protein doubtful CDS with no significant database hits to the full length CDS. Similarity to internal region of to Arabidopsis thaliana cytochrome P450 TR:Q9LTM6 (EMBL:AB024038) (502 aa) fasta scores: E(): 5.1%2C 27.3%25 id in 128 aa gene gene872 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0875 YPO0876 YPO0876 YPO0876 963257 963493 + hypothetical protein doubtful CDS with no significant database hits gene gene873 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0876 YPO0877 YPO0877 YPO0877 963499 963831 + hypothetical protein doubtful CDS with no significant database hits gene gene874 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0877 YPO0878 YPO0878 YPO0878 964013 964213 + putative regulatory protein Similar to Escherichia coli prophage CP4-57 regulatory protein AlpA SW:ALPA_ECOLI (P33997) (70 aa) fasta scores: E(): 0.0042%2C 29.3%25 id in 58 aa%2C and to Vibrio cholerae putative transcriptional regulator VC1809 TR:Q9KR38 (EMBL:AE004257) (76 aa) fasta scores: E(): 3.6e-09%2C 49.1%25 id in 57 aa%2C and to Yersinia pestis hypothetical protein TR:Q9ZFZ8 (EMBL:AF091251) (93 aa) fasta scores: E(): 4.1e-06%2C 39.0%25 id in 59 aa gene gene875 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0878 YPO0879 YPO0879 YPO0879 964372 964698 - hypothetical protein Weakly similar to Salmonella typhimurium LT2 hypothetical protein STMD1.84 TR:Q9L6S7 (EMBL:AF233324) (105 aa) fasta scores: E(): 6.6%2C 23.4%25 id in 94 aa%2C and to Bacteriophage N15 protein GP49 TR:O64357 (EMBL:AF064539) (103 aa) fasta scores: E(): 9.2%2C 24.7%25 id in 93 aa gene gene876 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0879 YPO0880 YPO0880 YPO0880 964998 967289 + putative primase N-terminus similar to C-terminus of Escherichia coli DNA primase TraC SW:TRC4_ECOLI (P27189) (1061 aa) fasta scores: E(): 2.8e-08%2C 30.0%25 id in 293 aa. Full length CDS similar to Bacteriophage P4 putative P4-specific DNA primase SW:PRIM_BPP4 (P10277) (777 aa) fasta scores: E(): 0%2C 40.5%25 id in 790 aa gene gene877 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0880 YPO0881 YPO0881 YPO0881 967689 968087 - conserved hypothetical protein Similar to Escherichia coli hypothetical protein YgiT SW:YGIT_ECOLI (Q46864) (131 aa) fasta scores: E(): 1.3e-31%2C 60.3%25 id in 131 aa%2C and to Alcaligenes eutrophus hypothetical protein TR:Q9ZAL4 (EMBL:Y10831) (133 aa) fasta scores: E(): 1.1e-28%2C 55.0%25 id in 131 aa gene gene878 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0881 YPO0882 YPO0882 YPO0882 968087 968383 - conserved hypothetical protein Similar to Escherichia coli hypothetical protein YgiU SW:YGIU_ECOLI (Q46865) (98 aa) fasta scores: E(): 1.4e-24%2C 67.0%25 id in 97 aa%2C and to Alcaligenes eutrophus hypothetical protein TR:Q9ZAL5 (EMBL:Y10831) (98 aa) fasta scores: E(): 3.5e-21%2C 57.1%25 id in 98 aa gene gene879 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0882 YPO0883 YPO0883 YPO0883 968547 968909 - putative DNA binding protein Similar to Xylella fastidiosa hypothetical protein XF0534 TR:Q9PFX2 (EMBL:AE003901) (114 aa) fasta scores: E(): 0.0049%2C 30.5%25 id in 118 aa. Similar to YPO4028 (97.5%25 identity in 120 aa overlap) gene gene880 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0883 YPO0884 YPO0884 YPO0884 968972 969232 - hypothetical protein Weakly similar to Methanococcus jannaschii hypothetical protein MJ0071 SW:Y071_METJA (Q60374) (90 aa) fasta scores: E(): 0.022%2C 28.9%25 id in 83 aa%2C and to Escherichia coli hypothetical protein RelE SW:RELE_ECOLI (P07008) (95 aa) fasta scores: E(): 0.13%2C 22.4%25 id in 85 aa gene gene881 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0884 YPO0886 YPO0886 YPO0886 969475 969669 + insertion sequence protein (partial) Probable gene remnant%2C similar to Shigella flexneri insertion sequence IS911 protein TR:Q54158 (EMBL:Z23100) (119 aa) fasta scores: E(): 0.0067%2C 43.5%25 id in 62 aa%2C and to Shigella flexneri insertion sequence IS2 protein TR:Q54157 (EMBL:Z23101) (179 aa) fasta scores: E(): 0.0096%2C36.1%25 id in 72 aa%3B~was marked partial mRNA gene882 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0886 YPO0887 YPO0887 int int 970097 971311 - integrase Similar to Shigella flexneri P4-like integrase Int TR:Q9XCI7 (EMBL:AF141323) (394 aa) fasta scores: E(): 0%2C65.2%25 id in 394 aa%2C and to Escherichia coli CP4-like integrase Int TR:O85610 (EMBL:AF071034) (393 aa) fasta scores: E(): 0%2C 65.6%25 id in 389 aa. Similar to YPO4033 (62.4%25 identity in 386 aa overlap). gene gene883 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0887 YPO0888 YPO0888 asuD asuD 971744 973261 - lysyl-tRNA synthetase Similar to Escherichia coli lysyl-tRNA synthetase LysS SW:SYK1_ECOLI (P13030) (504 aa) fasta scores: E(): 0%2C85.9%25 id in 504 aa%2C and to Haemophilus influenzae lysyl-tRNA synthetase LysS SW:SYK_HAEIN (P43825) (502 aa) fasta scores: E(): 0%2C 68.5%25 id in 504 aa gene gene884 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0888 YPO0889 YPO0889 prfB prfB 973271 974369 - peptide chain release factor 2 Similar to Escherichia coli peptide chain release factor 2 PrfB SW:RF2_ECOLI (P07012) (365 aa) fasta scores: E(): 0%2C 88.8%25 id in 365 aa%2C and to Salmonella typhimurium peptide chain release factor 2 PrfB SW:RF2_SALTY (P28353) (365 aa) fasta scores: E(): 0%2C 89.0%25 id in 365 aa. Contains an in-frame premature opal (UGA) termination codon (codon 26) followed by a frameshift. Orthologues also contain nonsense mutation and frameshift. Autogenous suppression of the nonsense mutation. Full length E. coli and S. typhimurium orthologues have been shown to translated via a frameshift mechanism. gene gene885 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0889 YPO0890 YPO0890 recJ recJ 974548 976281 - single-stranded-DNA-specific exonuclease Similar to Escherichia coli single-stranded-DNA-specific exonuclease RecJ SW:RECJ_ECOLI (P21893) (577 aa) fasta scores: E(): 0%2C 75.4%25 id in 573 aa%2Cand to Erwinia chrysanthemi single-stranded-DNA-specific exonuclease RecJ SW:RECJ_ERWCH (P39693) (575 aa) fasta scores: E(): 0%2C 79.0%25 id in 572 aa gene gene886 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0890 YPO0891 YPO0891 dsbC dsbC 976288 977004 - thiol:disulfide interchange protein (DsbC) Similar to Erwinia chrysanthemi thiol:disulfide interchange protein DsbC SW:DSBC_ERWCH (P39691) (238 aa) fasta scores: E(): 0%2C 73.1%25 id in 238 aa%2C and to Escherichia coli thiol:disulfide interchange protein dsbc precursor DsbC SW:DSBC_ECOLI (P21892) (236 aa) fasta scores: E(): 0%2C 68.0%25 id in 231 aa gene gene887 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0891 YPO0892 YPO0892 xerD xerD 977035 977934 - integrase/recombinase Similar to Escherichia coli integrase/recombinase XerD SW:XERD_ECOLI (P21891) (298 aa) fasta scores: E(): 0%2C83.5%25 id in 297 aa%2C and to Salmonella typhimurium integrase/recombinase XerD SW:XERD_SALTY (P55889) (298 aa) fasta scores: E(): 0%2C 82.8%25 id in 297 aa. Belongs to the phage integrase family. gene gene888 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0892 YPO0893 YPO0893 fldB fldB 978041 978559 + flavodoxin 2 Similar to Escherichia coli flavodoxin 2 FldB SW:FLAW_ECOLI (P41050) (173 aa) fasta scores: E(): 0%2C 75.0%25 id in 168 aa%2C and to Vibrio cholerae flavodoxin 2 VC2420 TR:Q9KPE8 (EMBL:AE004311) (198 aa) fasta scores: E(): 0%2C61.7%25 id in 167 aa gene gene889 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0893 YPO0894 YPO0894 creD creD 978649 980127 - putative membrane protein Similar to Escherichia coli inner membrane protein CreD SW:CRED_ECOLI (P08369) (450 aa) fasta scores: E(): 0%2C47.1%25 id in 429 aa%2C and to Aeromonas hydrophila putative inner membrane protein BlrD TR:Q9KGR5 (EMBL:AJ276632) (449 aa) fasta scores: E(): 0%2C 46.9%25 id in 452 aa gene gene890 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0894 YPO0895 YPO0895 creC creC 980227 981645 - putative histidine kinase sensor Similar to Myxococcus xanthus developmental histidine kinase sensor SasS TR:O52223 (EMBL:AF029787) (497 aa) fasta scores: E(): 1.4e-23%2C 28.2%25 id in 485 aa%2C and to Escherichia coli sensor protein CreC SW:CREC_ECOLI (P08401) (474 aa) fasta scores: E(): 0%2C 58.3%25 id in 470 aa. Probable sensor kinase protein of two-component regulatory system gene gene891 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0895 YPO0896 YPO0896 blrA blrA 981670 982371 - putative response regulator Similar to Aeromonas jandaei beta-lactamase production response regulator protein BlrA TR:P97015 (EMBL:U67069) (223 aa) fasta scores: E(): 0%2C 60.3%25 id in 229 aa%2C and to Escherichia coli transcriptional regulatory protein CreB SW:CREB_ECOLI (P08368) (229 aa) fasta scores: E(): 0%2C 59.4%25 id in 229 aa. Probable response regulator protein of two-component regulatory system gene gene892 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0896 YPO0896a YPO0896a YPO0896a 982368 982793 - conserved hypothetical protein Similar to Escherichia coli hypothetical protein YgfX SW:YGFX_ECOLI (Q46824) (135 aa) fasta scores: E(): 1.1e-28%2C 53.7%25 id in 123 aa%2C 53.7%25 id in 123 aa%2C and to enterohemorrhagic Escherichia coli O157:H7 hypothetical protein Z4234 TR:AAG58024 (EMBL:AE005520) (135 aa) fasta scores: E(): 3.9e-28%2C 52.8%25 id in 123 aa gene gene893 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0896a YPO0897 YPO0897 YPO0897 982774 983040 - conserved hypothetical protein Similar to Escherichia coli hypothetical protein YgfY SW:YGFY_ECOLI (Q46825) (88 aa) fasta scores: E(): 0%2C81.8%25 id in 88 aa%2C and to Vibrio cholerae hypothetical protein VC2471 TR:Q9KPA2 (EMBL:AE004316) (86 aa) fasta scores: E(): 3.1e-16%2C 53.8%25 id in 80 aa gene gene894 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0897 YPO0898 YPO0898 YPO0898 983357 984349 + conserved hypothetical protein Similar to Escherichia coli hypothetical protein YgfZ SW:UP14_ECOLI (P39179) (325 aa) fasta scores: E(): 0%2C68.2%25 id in 324 aa%2C and to Buchnera aphidicola (subsp. Acyrthosiphon pisum) hypothetical protein BU435 TR:BAB13133 (EMBL:AP001119) (319 aa) fasta scores: E(): 0%2C 39.3%25 id in 295 aa gene gene895 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0898 YPO0899 YPO0899 YPO0899 984422 984919 - putative membrane protein Similar to Streptomyces coelicolor putative integral membrane protein SCD6.09C TR:Q9KZZ5 (EMBL:AL353815) (169 aa) fasta scores: E(): 3e-18%2C 40.6%25 id in 160 aa gene gene896 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0899 YPO0900 YPO0900 YPO0900 985177 985878 - putative hemolysin III Similar to Bacillus cereus hemolysin III SW:HLY3_BACCE (P54176) (219 aa) fasta scores: E(): 6.7e-33%2C46.0%25 id in 202 aa%2C and to Escherichia coli hypothetical protein YqfA SW:YQFA_ECOLI (Q46827) (219 aa) fasta scores: E(): 0%2C 76.7%25 id in 206 aa gene gene897 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0900 YPO0901 YPO0901 YPO0901 986080 987225 - putative exported protein No significant database matches. Similar to YPO1686 (61.0%25 identity in 354 aa overlap). gene gene898 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0901 YPO0902 YPO0902 YPO0902 987287 989263 - putative surface protein (partial) Similar to C-terminal regions of Haemophilus influenzae adhesin Hia TR:Q48152 (EMBL:U38617) (1098 aa) fasta scores: E(): 3.6e-09%2C 23.0%25 id in 709 aa%2C and Xylella fastidiosa surface protein XF1981 TR:Q9PC04 (EMBL:AE004017) (1190 aa) fasta scores: E(): 0%2C 36.7%25 id in 671 aa. CDS is similar to the C-terminal regions of surface proteins and does not have an N-terminal signal sequence. Therefore it is unlikely to be exported and is a possible gene fragment. Upstream of the CDS is a region of ow GC%25 that is possibly laterally acquired DNA and may account for the truncation. The N- and C-terminal region of the CDS are similar to YPO1684 (53.0%25 identity in 658 aa overlap)%2C and the C-terminus of the CDS is similar YPO1685 (79.2%25 identity in 144 aa overlap).%3B~was marked partial gene gene899 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0902 YPO0904 YPO0904 YPO0904 990473 990910 - hypothetical protein no significant database hits gene gene900 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0904 YPO0905 YPO0905 gcvP gcvP 991288 994167 - glycine dehydrogenase Similar to Escherichia coli glycine dehydrogenase (glycine-cleavage system P protein) GcvP SW:GCSP_ECOLI (P33195) (956 aa) fasta scores: E(): 0%2C 83.5%25 id in 958 aa%2Cand to Pseudomonas aeruginosa glycine cleavage system protein P1%2C GcvP1 TR:AAG08598 (EMBL:AE004934) (958 aa) fasta scores: E(): 0%2C 64.7%25 id in 958 aa gene gene901 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0905 YPO0906 YPO0906 gcsH gcsH 994379 994765 - glycine cleavage system H protein Similar to Escherichia coli glycine cleavage system H protein GcsH SW:GCSH_ECOLI (P23884) (128 aa) fasta scores: E(): 0%2C 75.6%25 id in 127 aa%2C and to Pseudomonas aeruginosa glycine cleavage system protein H1%2C GcvH1 TR:AAG08599 (EMBL:AE004934) (129 aa) fasta scores: E(): 1.1e-26%2C 55.1%25 id in 127 aa gene gene902 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0906 YPO0907 YPO0907 gcvT gcvT 994834 995931 - aminomethyltransferase Similar to Escherichia coli aminomethyltransferase GcsT SW:GCST_ECOLI (P27248) (363 aa) fasta scores: E(): 0%2C79.6%25 id in 362 aa%2C and to Pseudomonas aeruginosa glycine-cleavage system protein T1%2C GcvT1 TR:AAG08600 (EMBL:AE004934) (360 aa) fasta scores: E(): 0%2C 57.8%25 id in 365 aa gene gene903 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0907 YPO0908 YPO0908 visC visC 996652 997872 - putative monooxygenase Similar to Escherichia coli hypothetical VisC protein ( which is required for the biosynthesis of ubiquinone) SW:VISC_ECOLI (P25535) (400 aa) fasta scores: E(): 0%2C 71.4%25 id in 402 aa%2C and to Escherichia coli 2-octaprenyl-3-methyl-6-methoxy-1%2C4-benzoquinol hydroxylase UbiF SW:UBIF_ECOLI (P75728) (391 aa) fasta scores: E(): 0%2C38.2%25 id in 395 aa gene gene904 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0908 YPO0909 YPO0909 ubiH ubiH 998045 999223 - 2-octaprenyl-6-methoxyphenol hydroxylase Similar to Escherichia coli 2-octaprenyl-6-methoxyphenol hydroxylase UbiH SW:UBIH_ECOLI (P25534) (392 aa) fasta scores: E(): 0%2C 66.1%25 id in 392 aa%2Cand to Vibrio cholerae putative 2-octaprenyl-6-methoxyphenol hydroxylase VC2475 TR:Q9KP98 (EMBL:AE004317) (402 aa) fasta scores: E(): 0%2C 50.0%25 id in 394 aa gene gene905 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0909 YPO0910 YPO0910 pepP pepP 999292 1000605 - proline-specific aminopeptidase Similar to Escherichia coli proline-specific (Xaa-Pro) aminopeptidase PepP SW:AMPP_ECOLI (P15034) (440 aa) fasta scores: E(): 0%2C 82.0%25 id in 433 aa%2C and to Shigella flexneri aminopeptidase PepP TR:O52579 (EMBL:AF041033) (441 aa) fasta scores: E(): 0%2C 81.8%25 id in 434 aa gene gene906 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0910 YPO0911 YPO0911 YPO0911 1000693 1001271 - putative exported protein Similar to Escherichia coli hypothetical protein YgfB SW:YGFB_ECOLI (P25533) (194 aa) fasta scores: E(): 0%2C66.7%25 id in 192 aa%2C and to Haemophilus influenzae hypothetical protein HI0817 SW:YGFB_HAEIN (P44882) (182 aa) fasta scores: E(): 8.9e-29%2C 43.9%25 id in 187 aa gene gene907 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0911 YPO0912 YPO0912 YPO0912 1001608 1001937 + conserved hypothetical protein Similar to Escherichia coli hypothetical protein YgfE SW:YGFE_ECOLI (P45580) (109 aa) fasta scores: E(): 0%2C79.8%25 id in 109 aa%2C and to Vibrio cholerae hypothetical protein VC2478 TR:Q9KP95 (EMBL:AE004317) (102 aa) fasta scores: E(): 2.1e-11%2C 41.5%25 id in 94 aa gene gene908 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0912 YPO0913 YPO0913 YPO0913 1002301 1002897 + putative 5-formyltetrahydrofolate cyclo-ligase-family protein Similar to Escherichia coli hypothetical protein YgfA SW:YGFA_ECOLI (P09160) (182 aa) fasta scores: E(): 0%2C69.6%25 id in 181 aa%2C and to Oryctolagus cuniculus 5-formyltetrahydrofolate cyclo-ligase SW:FTHC_RABIT (P80405) (201 aa) fasta scores: E(): 2.4e-13%2C 32.1%25 id in 187 aa gene gene910 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0913 YPO0914 YPO0914 serA serA 1003162 1004403 - D-3-phosphoglycerate dehydrogenase Similar to Escherichia coli D-3-phosphoglycerate dehydrogenase SerA SW:SERA_ECOLI (P08328) (409 aa) fasta scores: E(): 0%2C 83.7%25 id in 412 aa%2C and to Vibrio cholerae probable D-3-phosphoglycerate dehydrogenase VC2481 TR:Q9KP92 (EMBL:AE004317) (409 aa) fasta scores: E(): 0%2C74.3%25 id in 413 aa gene gene911 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0914 YPO0915 YPO0915 rpiA rpiA 1004710 1005366 - ribose 5-phosphate isomerase A Similar to Escherichia coli ribose 5-phosphate isomerase A RpiA SW:RPIA_ECOLI (P27252) (219 aa) fasta scores: E(): 0%2C 83.4%25 id in 217 aa%2C and to Edwardsiella ictaluri ribose 5-phosphate isomerase A RpiA SW:RPIA_EDWIC (O52398) (219 aa) fasta scores: E(): 0%2C 81.6%25 id in 217 aa gene gene912 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0915 YPO0916 YPO0916 iciA iciA 1005708 1006616 + chromosome initiation inhibitor Similar to Escherichia coli%2C LysR-family%2C chromosome initiation inhibitor IciA SW:ICIA_ECOLI (P24194) (297 aa) fasta scores: E(): 0%2C 91.9%25 id in 297 aa%2C and to Edwardsiella ictaluri chromosome initiation inhibitor IciA SW:ICIA_EDWIC (O52399) (297 aa) fasta scores: E(): 0%2C 89.9%25 id in 297 aa gene gene913 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0916 YPO0917 YPO0917 yggE yggE 1006627 1007406 - putative exported protein Similar to Edwardsiella ictaluri hypothetical protein YggE SW:YGGE_EDWIC (O52400) (239 aa) fasta scores: E(): 0%2C 66.5%25 id in 239 aa%2C and to Escherichia coli hypothetical protein YggE SW:YGGE_ECOLI (P11668) (246 aa) fasta scores: E(): 0%2C 62.9%25 id in 251 aa gene gene914 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0917 YPO0918 YPO0918 yggA yggA 1007596 1008213 - putative LysE type translocator Similar to Escherichia coli hypothetical protein YggA SW:YGGA_ECOLI (P11667) (211 aa) fasta scores: E(): 0%2C68.6%25 id in 204 aa%2C and to Aeromonas salmonicida hypothetical protein YggA SW:YGGA_AERSA (P70775) (206 aa) fasta scores: E(): 0%2C 52.3%25 id in 199 aa gene gene915 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0918 YPO0919 YPO0919 YPO0919 1008476 1009345 - putative membrane protein Similar to Edwardsiella ictaluri hypothetical protein YggB SW:YGGB_EDWIC (O52401) (286 aa) fasta scores: E(): 0%2C 72.4%25 id in 286 aa%2C and to Escherichia coli hypothetical protein YggB SW:YGGB_ECOLI (P11666) (286 aa) fasta scores: E(): 0%2C 66.7%25 id in 285 aa gene gene916 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0919 YPO0920 YPO0920 fba fba 1009783 1010862 - fructose-bisphosphate aldolase class II Similar to Escherichia coli fructose-bisphosphate aldolase class II FbaA SW:ALF_ECOLI (P11604) (358 aa) fasta scores: E(): 0%2C 91.3%25 id in 358 aa%2C and to Edwardsiella ictaluri fructose-bisphosphate aldolase FbaA SW:ALF_EDWIC (O52402) (358 aa) fasta scores: E(): 0%2C 89.1%25 id in 359 aa gene gene917 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0920 YPO0921 YPO0921 pgk pgk 1010982 1012145 - phosphoglycerate kinase Similar to Escherichia coli phosphoglycerate kinase Pgk SW:PGK_ECOLI (P11665) (386 aa) fasta scores: E(): 0%2C88.6%25 id in 386 aa%2C and to Haemophilus influenzae phosphoglycerate kinase Pgk SW:PGK_HAEIN (P43726) (385 aa) fasta scores: E(): 0%2C 79.2%25 id in 385 aa gene gene918 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0921 YPO0922 YPO0922 epd epd 1012248 1013264 - D-erythrose 4-phosphate dehydrogenase Similar to Escherichia coli D-erythrose 4-phosphate dehydrogenase Epd SW:E4PD_ECOLI (P11603) (338 aa) fasta scores: E(): 0%2C 82.7%25 id in 336 aa%2C and to Vibrio cholerae erythrose-4-phosphate dehydrogenase Epd TR:P96153 (EMBL:U72152) (341 aa) fasta scores: E(): 0%2C 69.0%25 id in 336 aa gene gene919 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0922 YPO0923 YPO0923 ypmt1.57c ypmt1.57c 1013579 1014361 - insertion sequence IS100%2C ATP-binding protein Similar to Escherichia coli insertion sequence IS21 putative ATP-binding protein%2C IstB SW:ISTB_ECOLI (P15026) (265 aa) fasta scores: E(): 0%2C 47.4%25 id in 249 aa. Also almost identical to Yersinia pestis and Escherichia coli putative IS100 transposase ypmt1.57c TR:Q9R3L5 (EMBL:AL117211) (260 aa) fasta scores: E(): 0%2C 99.6%25 id in 260 aa. gene gene920 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0923 YPO0924 YPO0924 y1093 y1093 1014358 1015380 - transposase for insertion sequence IS100 Similar to Escherichia coli transposase for insertion sequence element IS21 IstA SW:ISTA_ECOLI (P15025) (390 aa) fasta scores: E(): 3e-27%2C 33.1%25 id in 329 aa. Identical to the previously sequenced Yersinia pestis%2CYersinia pseudotuberculosis%2C and Escherichia coli pesticin plasmid insertion sequence transposase Y1055 TR:P74993 (EMBL:U59875) (340 aa) fasta scores: E(): 0%2C 100.0%25 id in 340 aa gene gene921 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0924 YPO0925 YPO0925 tnp tnp 1015564 1016022 - transposase for the IS1541 insertion element Similar to Salmonella typhimurium and Salmonella typhi transposase for insertion sequence IS200%2C TnpA%2CSW:TNPA_SALTY (Q57334) (152 aa) fasta scores: E(): 0%2C 93.4%25 id in 152 aa. Almost identical to the Yersinia pseudotuberculosis IS1541 element transposase Tn TR:Q9X9F5 (EMBL:AJ238014) (152 aa) fasta scores: E(): 0%2C 99.3%25 id in 152 aa gene gene922 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0925 YPO0926 YPO0926 tkt tkt 1016330 1018324 - transketolase 1 Similar to Escherichia coli transketolase 1 TktA SW:TKT1_ECOLI (P27302) (663 aa) fasta scores: E(): 0%2C 86.1%25 id in 663 aa%2C and to Vibrio cholerae transketolase 1 VC0473 TR:Q9KUP2 (EMBL:AE004133) (694 aa) fasta scores: E(): 0%2C80.1%25 id in 664 aa gene gene923 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0926 YPO0927 YPO0927 YPO0927 1018815 1019567 + putative lipoprotein Similar to Escherichia coli hypothetical protein YggG SW:YGGG_ECOLI (P25894) (252 aa) fasta scores: E(): 0%2C69.1%25 id in 249 aa%2C and to Pseudomonas aeruginosa conserved hypothetical protein PA0277 TR:AAG03666 (EMBL:AE004465) (252 aa) fasta scores: E(): 0%2C 63.9%25 id in 252 aa gene gene924 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0927 YPO0928 YPO0928 YPO0928 1019857 1020177 - putative Rieske protein Similar to Pseudomonas putida benzene 1%2C2-dioxygenase system ferredoxin component BedB SW:BEDB_PSEPU (Q07947) (107 aa) fasta scores: E(): 6.6e-12%2C35.8%25 id in 106 aa%2C and to Acinetobacter sp ADP1 hypothetical protein TR:O24846 (EMBL:AF009672) (101 aa) fasta scores: E(): 1.9e-19%2C 42.6%25 id in 101 aa gene gene925 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0928 YPO0929 YPO0929 speA speA 1020337 1022316 - biosynthetic arginine decarboxylase Similar to Escherichia coli biosynthetic arginine decarboxylase SpeA SW:SPEA_ECOLI (P21170) (658 aa) fasta scores: E(): 0%2C 84.7%25 id in 659 aa%2C and to Neisseria meningitidis biosynthetic arginine decarboxylase NMB0468 TR:Q9K0U3 (EMBL:AE002403) (630 aa) fasta scores: E(): 0%2C69.7%25 id in 620 aa gene gene926 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0929 YPO0931 YPO0931 metK metK 1023523 1024677 + S-adenosylmethionine synthetase Similar to Escherichia coli S-adenosylmethionine synthetase MetK SW:METK_ECOLI (P04384) (384 aa) fasta scores: E(): 0%2C 93.5%25 id in 384 aa%2C and to Vibrio cholerae S-adenosylmethionine synthase VC0472 TR:Q9KUP3 (EMBL:AE004133) (385 aa) fasta scores: E(): 0%2C 86.1%25 id in 382 aa gene gene927 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0931 YPO0932 YPO0932 YPO0932 1024870 1025382 + conserved hypothetical protein Similar to Escherichia coli hypothetical protein SprT SW:SPRT_ECOLI (P39902) (165 aa) fasta scores: E(): 0%2C69.8%25 id in 162 aa%2C and to Haemophilus influenzae hypothetical protein HI1173 SW:SPRT_HAEIN (P44119) (156 aa) fasta scores: E(): 1.8e-30%2C 52.0%25 id in 148 aa gene gene928 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0932 YPO0933 YPO0933 endA endA 1025480 1026187 + endonuclease I Similar to Escherichia coli endonuclease I EndA SW:END1_ECOLI (P25736) (235 aa) fasta scores: E(): 0%2C 74.0%25 id in 235 aa%2C and to Erwinia chrysanthemi nuclease NucM SW:NUCM_ERWCH (P37994) (266 aa) fasta scores: E(): 0%2C 75.7%25 id in 230 aa. Orthologues are periplasmic proteins. CDS is predicted to have an uncleavable N-terminal signal sequence. Effect on the function is unknown. gene gene929 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0933 YPO0934 YPO0934 YPO0934 1026439 1027170 + conserved hypothetical protein Similar to Escherichia coli hypothetical protein YggJ SW:YGGJ_ECOLI (P37912) (243 aa) fasta scores: E(): 0%2C78.2%25 id in 243 aa%2C and to Haemophilus influenzae hypothetical protein HI0303 SW:YGGJ_HAEIN (P44627) (245 aa) fasta scores: E(): 0%2C 68.4%25 id in 244 aa gene gene930 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0934 YPO0935 YPO0935 gsh-II gsh-II 1027196 1028155 + glutathione synthetase Similar to Escherichia coli glutathione synthetase GshB SW:GSHB_ECOLI (P04425) (316 aa) fasta scores: E(): 0%2C80.1%25 id in 317 aa%2C and to Vibrio cholerae glutathione synthetase VC0468 TR:Q9KUP7 (EMBL:AE004133) (318 aa) fasta scores: E(): 0%2C 73.9%25 id in 314 aa gene gene931 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0935 YPO0936 YPO0936 YPO0936 1028271 1028834 + conserved hypothetical protein Similar to Escherichia coli protein YqgE SW:YQGE_ECOLI (P52049) (187 aa) fasta scores: E(): 0%2C 66.8%25 id in 187 aa%2C and to Vibrio cholerae hypothetical protein VC0467 TR:Q9KUP8 (EMBL:AE004133) (200 aa) fasta scores: E(): 0%2C 51.6%25 id in 190 aa gene gene932 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0936 YPO0937 YPO0937 YPO0937 1028834 1029256 + conserved hypothetical protein Similar to Escherichia coli hypothetical protein YqgF SW:YQGF_ECOLI (P52050) (138 aa) fasta scores: E(): 0%2C76.7%25 id in 133 aa%2C and to Aeromonas hydrophila hypothetical protein YqgF TR:Q9L3I7 (EMBL:AJ276030) (140 aa) fasta scores: E(): 0%2C 67.1%25 id in 140 aa gene gene933 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0937 YPO0938 YPO0938 YPO0938 1029436 1030320 + putative carbon-nitrogen hydrolase Similar to Pseudomonas aeruginosa probable hydratase PA0293 TR:AAG03682 (EMBL:AE004467) (292 aa) fasta scores: E(): 0%2C 63.9%25 id in 291 aa%2C and to eukaryoyic Lycopersicon esculentum (Tomato) beta-alanine synthase TR:Q9XGI9 (EMBL:Y19104) (300 aa) fasta scores: E(): 0%2C 60.1%25 id in 288 aa gene gene934 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0938 YPO0939 YPO0939 YPO0939 1030324 1031439 + conserved hypothetical protein Similar to Pseudomonas aeruginosa conserved hypothetical protein PA0292 TR:AAG03681 (EMBL:AE004467) (368 aa) fasta scores: E(): 0%2C 57.5%25 id in 358 aa%2C and to eukaryotic Arabidopsis thaliana hypothetical protein T22D6_110 TR:Q9LEZ0 (EMBL:AL357612) (383 aa) fasta scores: E(): 0%2C 51.4%25 id in 368 aa gene gene935 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0939 YPO0940 YPO0940 YPO0940 1031548 1032624 - conserved hypothetical protein Similar to Pseudomonas aeruginosa twitching mobility protein PilT SW:PILT_PSEAE (P24559) (344 aa) fasta scores: E(): 0%2C 45.2%25 id in 330 aa%2C and to Escherichia coli hypothetical protein YggR SW:YGGR_ECOLI (P52052) (326 aa) fasta scores: E(): 0%2C 56.3%25 id in 325 aa gene gene936 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0940 YPO0941 YPO0941 YPO0941 1032692 1033390 + conserved hypothetical protein Similar to Escherichia coli hypothetical protein YggS SW:YGGS_ECOLI (P52054) (234 aa) fasta scores: E(): 0%2C69.0%25 id in 232 aa%2C and to Vibrio cholerae hypothetical protein VC0461 TR:Q9KUQ4 (EMBL:AE004132) (236 aa) fasta scores: E(): 0%2C 62.2%25 id in 233 aa gene gene937 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0941 YPO0942 YPO0942 proC proC 1033523 1034344 + putative pyrroline-5-carboxylate reductase Similar to Vibrio alginolyticus pyrroline-5-carboxylate reductase ProC SW:PROC_VIBAL (P52053) (278 aa) fasta scores: E(): 0%2C 61.9%25 id in 273 aa%2Cand to Vibrio cholerae probable pyrroline-5-carboxylate reductase VC0460 TR:Q9KUQ5 (EMBL:AE004132) (272 aa) fasta scores: E(): 0%2C 64.5%25 id in 273 aa gene gene938 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0942 YPO0943 YPO0943 yggT yggT 1034632 1035186 + putative membrane protein Similar to Escherichia coli hypothetical protein YggT SW:YGGT_ECOLI (P52058) (188 aa) fasta scores: E(): 0%2C58.7%25 id in 184 aa%2C and to Vibrio cholerae hypothetical protein VC0459 vc0459 TR:Q9KUQ6 (EMBL:AE004132) (185 aa) fasta scores: E(): 0%2C 54.6%25 id in 185 aa gene gene939 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0943 YPO0944 YPO0944 YPO0944 1035183 1035473 + conserved hypothetical protein Similar to Escherichia coli hypothetical protein YggU SW:YGGU_ECOLI (P52060) (96 aa) fasta scores: E(): 1.5e-29%2C 78.9%25 id in 95 aa%2C and to Vibrio cholerae hypothetical protein VC0458 TR:Q9KUQ7 (EMBL:AE004132) (96 aa) fasta scores: E(): 1.2e-22%2C 65.9%25 id in 88 aa gene gene940 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0944 YPO0945 YPO0945 YPO0945 1035573 1036166 + conserved hypothetical protein Similar to Escherichia coli hypothetical protein YggV SW:YGGV_ECOLI (P52061) (197 aa) fasta scores: E(): 0%2C79.6%25 id in 196 aa%2C and to Vibrio cholerae Ham1 protein VC0456 TR:Q9KUQ9 (EMBL:AE004132) (200 aa) fasta scores: E(): 0%2C 65.8%25 id in 196 aa gene gene941 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0945 YPO0946 YPO0946 YPO0946 1036159 1037289 + putative oxygen-independent coproporphyrinogen III oxidase Similar to Escherichia coli hypothetical protein YggW SW:YGGW_ECOLI (P52062) (378 aa) fasta scores: E(): 0%2C81.6%25 id in 376 aa%2C and to Haemophilus influenzae hypothetical protein HI0463SW:YGGW_HAEIN (P43899) (383 aa) fasta scores: E(): 0%2C 65.8%25 id in 380 aa gene gene942 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0946 YPO0947 YPO0947 YPO0947 1037479 1046811 - putative virulence determinant No significant database matches to the full length CDS. Internal regions similar to Vibrio cholerae RTX toxin gene cluster protein RtxA TR:Q9X4W2 (EMBL:AF119150) (4545 aa) fasta scores: E(): 1.9e-10%2C 32.4%25 id in 241 aa%2C and to Rhizobium leguminosarum putative bacteriocin TR:O33527 (EMBL:AJ001518) (958 aa) fasta scores: E(): 8.4e-05%2C 21.2%25 id in 900 aa. CDS DNA encoding protein has a low GC content%2C 37.22%25 gene gene943 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0947 YPO0948 YPO0948 YPO0948 1047313 1048067 - conserved hypothetical protein (pseudogene) Similar to Escherichia coli hypothetical protein YggN SW:YGGN_ECOLI (P46143) (239 aa) fasta scores: E(): 0%2C60.6%25 id in 231 aa%2C and to Vibrio cholerae hypothetical protein VC2286 TR:Q9KPS6 (EMBL:AE004299) (256 aa) fasta scores: E(): 0.00045%2C 26.1%25 id in 241 aa. Contains a frameshift after codon 166. Frame shift occurs at a poly A pentamer. The sequence has been checked and is believed to be correct pseudogene gene944 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0948 YPO0949 YPO0949 YPO0949 1048155 1049081 - putative glutaminase Similar to Rhizobium etli thermolabile glutaminase GlsA TR:O87405 (EMBL:AF057158) (309 aa) fasta scores: E(): 0%2C 52.6%25 id in 304 aa%2C and to Escherichia coli hypothetical protein YneH SW:YNEH_ECOLI (P77470) (308 aa) fasta scores: E(): 0%2C 74.4%25 id in 308 aa gene gene945 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0949 YPO0950 YPO0950 YPO0950 1049192 1049518 - conserved hypothetical protein Similar to Escherichia coli hypothetical protein YggL SW:YGGL_ECOLI (P38521) (108 aa) fasta scores: E(): 0%2C78.7%25 id in 108 aa%2C and to Haemophilus influenzae hypothetical protein HI0341 SW:YGGL_HAEIN (P44649) (114 aa) fasta scores: E(): 1.7e-27%2C 59.3%25 id in 108 aa gene gene946 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0950 YPO0951 YPO0951 YPO0951 1049518 1050237 - Putative methyltransferase Similar to Escherichia coli hypothetical protein YggH SW:YGGH_ECOLI (P32049) (239 aa) fasta scores: E(): 0%2C80.2%25 id in 237 aa%2C and to Vibrio cholerae hypothetical protein VC0453 TR:Q9KUR2 (EMBL:AE004132) (239 aa) fasta scores: E(): 0%2C 65.0%25 id in 237 aa gene gene947 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0951 YPO0952 YPO0952 mutB mutB 1050575 1051690 + A/G-specific adenine glycosylase Similar to Escherichia coli A/G-specific adenine glycosylase MutY SW:MUTY_ECOLI (P17802) (350 aa) fasta scores: E(): 0%2C 75.9%25 id in 344 aa%2C and to Salmonella typhimurium A/G-specific adenine glycosylase MutY SW:MUTY_SALTY (Q05869) (350 aa) fasta scores: E(): 0%2C 74.1%25 id in 344 aa. CDS contains extra amino acids at the C-terminus. Comparison of the synteny of the Y. pestis chromosome in this region reveals a small insertion relative to E. coli and S. typhi. gene gene948 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0952 YPO0953 YPO0953 YPO0953 1051868 1052140 + conserved hypothetical protein Similar to Escherichia coli hypothetical protein YggX SW:YGGX_ECOLI (P52065) (90 aa) fasta scores: E(): 8.7e-31%2C 82.0%25 id in 89 aa%2C and to Haemophilus influenzae hypothetical protein HI0760 SW:YGGX_HAEIN (P44048) (90 aa) fasta scores: E(): 1.9e-29%2C 74.2%25 id in 89 aa gene gene949 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0953 YPO0954 YPO0954 mltC mltC 1052311 1053399 + membrane-bound lytic murein transglycosylase C Similar to Escherichia coli membrane-bound lytic murein transglycosylase C MltC SW:MLTC_ECOLI (P52066) (359 aa) fasta scores: E(): 0%2C 77.7%25 id in 358 aa%2C and to Haemophilus influenzae membrane-bound lytic murein transglycosylase C Mltc SW:MLTC_HAEIN (P44049) (357 aa) fasta scores: E(): 0%2C 56.8%25 id in 359 aa gene gene950 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0954 YPO0955 YPO0955 YPO0955 1053828 1054799 + hypothetical protein Weakly similar to internal regions of Pseudomonas aeruginosa periplasmic binding protein PhuT TR:O68879 (EMBL:AF055999) (297 aa) fasta scores: E(): 0.0054%2C 27.7%25 id in 256 aa%2C and Pyrococcus horikoshii hypothetical protein PH1237 TR:O58946 (EMBL:AP000005) (366 aa) fasta scores: E(): 0.0047%2C 26.5%25 id in 283 aa gene gene951 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0955 YPO0956 YPO0956 YPO0956 1054837 1056936 + putative hydroxamate-type ferrisiderophore receptor Similar to Pseudomonas aeruginosa hydroxamate-type ferrisiderophore receptor FiuA TR:O68595 (EMBL:AF051691) (802 aa) fasta scores: E(): 0%2C 28.2%25 id in 689 aa%2C and to Escherichia coli O157:H7 putative iron compound receptor Z4386 TR:AAG58168 (EMBL:AE005533) (713 aa) fasta scores: E(): 0%2C 44.9%25 id in 664 aa. Lack of similarity in the N-terminus%2C signal sequence containing region of the CDS. gene gene952 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0956 YPO0957 YPO0957 YPO0957 1057019 1058038 - putative sugar transport system permease protein Similar to Bacillus subtilis ribose transport system permease protein RbsC SW:RBSC_BACSU (P36948) (323 aa) fasta scores: E(): 0%2C 42.3%25 id in 298 aa%2C and to Vibrio cholerae possible ribose ABC transporter%2C permease protein VCA0129 TR:Q9KN36 (EMBL:AE004354) (332 aa) fasta scores: E(): 0%2C38.0%25 id in 329 aa gene gene953 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0957 YPO0958 YPO0958 mglA mglA 1058035 1059534 - putative sugar transport ATP-binding protein Similar to Escherichia coli galactoside transport ATP-binding protein MglA SW:MGLA_ECOLI (P23199) (506 aa) fasta scores: E(): 0%2C 42.0%25 id in 493 aa%2C and to Bacillus halodurans ribose ABC transporter RbsA TR:Q9K6J9 (EMBL:AP001519) (499 aa) fasta scores: E(): 0%2C 45.6%25 id in 489 aa gene gene954 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0958 YPO0959 YPO0959 YPO0959 1059580 1060539 - putative sugar ABC transporter periplasmic binding protein Similar to Escherichia coli D-xylose-binding periplasmic protein precursor XylF SW:XYLF_ECOLI (P37387) (330 aa) fasta scores: E(): 8.7e-11%2C 25.0%25 id in 328 aa%2Cand to Thermotoga maritima possible ribose ABC transporter%2Cperiplasmic ribose-binding protein TM0958 TR:Q9X053 (EMBL:AE001759) (323 aa) fasta scores: E(): 1.8e-17%2C 28.0%25 id in 314 aa gene gene955 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0959 YPO0960 YPO0960 speC speC 1061095 1063257 - ornithine decarboxylase Similar to Escherichia coli constitutive ornithine decarboxylase SpeC SW:DCOR_ECOLI (P21169) (731 aa) fasta scores: E(): 0%2C 73.1%25 id in 718 aa%2C and to Vibrio cholerae inducible ornithine decarboxylase VCA1063 TR:Q9KKN9 (EMBL:AE004431) (720 aa) fasta scores: E(): 0%2C 72.4%25 id in 718 aa gene gene956 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0960 YPO0961 YPO0961 YPO0961 1064254 1064562 - integrase (partial) Similar to internal fragments of Pseudomonas aeruginosa integrase XerC TR:AAG02084 (EMBL:AF285416) (427 aa) fasta scores: E(): 4e-13%2C 40.7%25 id in 91 aa%2C and Mycobacterium leprae integrase XerC TR:O33037 (EMBL:Z97369) (302 aa) fasta scores: E(): 0.0026%2C 34.3%25 id in 105 aa%3B~was marked partial gene gene957 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0961 YPO0962 YPO0962 YPO0962 1064586 1065221 - hypothetical protein no significant database hits to the full length CDS. Weakly similar to internal region of Pseudomonas aeruginosa conserved hypothetical protein PA0262 TR:AAG03651 (EMBL:AE004464) (1019 aa) fasta scores: E(): 3.8e-10%2C 28.4%25 id in 148 aa%2C and to the N-terminus of Neisseria meningitidis ribose 5-phosphate isomerase A RpiA TR:Q9JTM5 (EMBL:AL162756) (223 aa) fasta scores: E(): 1.6%2C 26.1%25 id in 138 aa. CDS is similar to YPO0967 (92.9%25 identity in 211 aa overlap) and to the C-terminal regions of YPO1472 (94.8%25 identity in 211 aa overlap)%2C YPO0970 (87.2%25 identity in 211 aa overlap) and YPO1475 (86.0%25 identity in 86 aa overlap) gene gene958 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0962 YPO0963 YPO0963 insB insB 1065829 1066185 - insertion sequence protein Similar to Erwinia herbicola putative transposase B TR:AAG53990 (EMBL:AF327446) (168 aa) fasta scores: E(): 0%2C81.4%25 id in 118 aa%2C and to Shigella sonnei insertion element IS1 protein InsB SW:ISB_SHISO (P19766) (131 aa) fasta scores: E(): 1.9e-21%2C 51.3%25 id in 117 aa. CDS is truncated at the N-terminus relative to the Erwinia herbicola protein. There is strong similarity to the Erwinia herbicola sequence upstream of the CDS%2C but there is no translational start. Conservation in the upstream sequence may be accounted for by the overlap with the upstream insertion sequence protein in both organisms (YPO0964 in Y. pestis and putative transposase A in Erwinia herbicola). gene gene959 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0963 YPO0964 YPO0964 insA insA 1066251 1066526 - insertion sequence protein Similar to Erwinia herbicola putative transposase A TR:AAG53989 (EMBL:AF327446) (91 aa) fasta scores: E(): 1.1e-29%2C 84.6%25 id in 91 aa%2C and to Shigella dysenteriae insertion element IS1 protein InsA TR:AAF28118 (EMBL:AF153317) (90 aa) fasta scores: E(): 5.9e-17%2C 55.6%25 id in 90 aa. CDS is similar to YPO0968 (97.8%25 identity in 91 aa overlap). gene gene960 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0964 YPO0965 YPO0965 YPO0965 1066622 1067371 - hypothetical protein no significant database hits gene gene961 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0965 YPO0966 YPO0966 YPO0966 1067376 1069673 - putative kinase No significant database matches to the full length CDS. Some similarity to internal region of Staphylococcus carnosus hydroxyethylthiazole kinase ThiM SW:THIM_STACA (Q9RGS6) (264 aa) fasta scores: E(): 8.5%2C 30.2%25 id in 106 aa. CDS is similar to YPO1473 (83.2%25 identity in 768 aa overlap). gene gene962 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0966 YPO0967 YPO0967 YPO0967 1069689 1070324 - hypothetical protein no significant database hits. Full length CDS is similar to YPO0962 (92.9%25 identity in 211 aa overlap) and C-terminal regions of YPO1472 (97.2%25 identity in 211 aa overlap) and YPO0970 (90.0%25 identity in 211 aa overlap). C-terminus of CDS is similar to YPO1475 (79.1%25 identity in 86 aa overlap) gene gene963 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0967 YPO0967a YPO0967a YPO0967a 1070859 1071191 - insertion sequence protein (partial) Similar to Erwinia herbicola putative transposase B TR:AAG53990 (EMBL:AF327446) (168 aa) fasta scores: E(): 1.3e-10%2C 76.7%25 id in 43 aa%2C and to Shigella sonnei insertion element IS1 protein InsB SW:ISB_SHISO (P19766) (131 aa) fasta scores: E(): 0.0014%2C 48.5%25 id in 33 aa%3B~was marked partial gene gene964 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0967a YPO0968 YPO0968 insA insA 1071245 1071520 - insertion sequence protein Similar to Erwinia herbicola putative transposase A TR:AAG53989 (EMBL:AF327446) (91 aa) fasta scores: E(): 3.3e-30%2C 83.5%25 id in 91 aa%2C and to Shigella dysenteriae insertion element IS1 protein InsA TR:AAF28138 (EMBL:AF153317) (90 aa) fasta scores: E(): 1.1e-17%2C 55.6%25 id in 90 aa gene gene965 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0968 YPO0968a YPO0968a YPO0968a 1071907 1072287 - hypothetical protein no significant database hits gene gene966 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0968a YPO0969 YPO0969 YPO0969 1072398 1074620 - hypothetical protein no significant database hits gene gene967 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0969 YPO0970 YPO0970 YPO0970 1074635 1076983 - conserved hypothetical protein Similar to Pseudomonas aeruginosa conserved hypothetical protein TR:AAG03485 (EMBL:AE004448) (741 aa) fasta scores: E(): 3.9e-22%2C 24.1%25 id in 771 aa%2C and to the N-terminal region of Escherichia coli hypothetical protein VgrE TR:O52660 (EMBL:AF044499) (702 aa) fasta scores: E(): 1.5e-19%2C 22.1%25 id in 721 aa. Similar to YPO1472 (94.6%25 identity in 782 aa overlap)%2C YPO0962 (87.2%25 identity in 211 aa overlap) and YPO0967 (90.0%25 identity in 211 aa overlap) gene gene968 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0970 YPO0971 YPO0971 clpB3 clpB3 1076980 1079628 - Clp ATPase Similar to Escherichia coli ClpB protein%2C which is thought to form part of a multi-chaperone system supressing protein aggregation%2C SW:CLPB_ECOLI (P03815) (857 aa) fasta scores: E(): 0%2C 39.4%25 identity in 872 aa overlap and Yersinia enterocolitica Clp protease-associated protein ClpB TR:AAG00524 (EMBL:AF285784) (890 aa) fasta scores: E(): 0%2C 43.2%25 id in 876 aa. Similar to YPO1471 (95.0%25 identity in 879 aa overlap) gene gene969 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0971 YPO0973 YPO0973 YPO0973 1080046 1080537 - conserved hypothetical protein Similar to Vibrio cholerae secreted hydrophilic protein VC1415 TR:P72350 (EMBL:S81006) (172 aa) fasta scores: E(): 3.9e-18%2C 37.8%25 id in 143 aa%2C and to Pseudomonas aeruginosa probable secreted protein HcpC TR:AAG03652 (EMBL:AE004464) (172 aa) fasta scores: E(): 1.6e-17%2C 35.5%25 id in 166 aa. Identical to YPO1470. gene gene970 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0973 YPO0974 YPO0974 YPO0974 1080541 1082277 - putative OmpA-family membrane protein No significant database matches to the full length CDS. Similar to C-terminus of Pseudomonas fluorescens major outer-membrane protein OprF TR:Q51780 (EMBL:L21200) (317 aa) fasta scores: E(): 2.2e-08%2C 37.1%25 id in 159 aa. Almost identical to YPO1469 (99.5%25 identity in 578 aa overlap). gene gene971 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0974 YPO0975 YPO0975 YPO0975 1082277 1082963 - putative membrane protein Similar to Vibrio cholerae hypothetical protein VCA0115 TR:Q9KN50 (EMBL:AE004353) (257 aa) fasta scores: E(): 3.1e-05%2C 25.2%25 id in 206 aa. Identical to YPO1468. gene gene972 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0975 YPO0976 YPO0976 YPO0976 1082960 1084312 - conserved hypothetical protein Similar to Vibrio cholerae hypothetical protein VCA0114 TR:Q9KN51 (EMBL:AE004353) (444 aa) fasta scores: E(): 6.8e-31%2C 27.8%25 id in 449 aa%2C and to Pseudomonas aeruginosa hypothetical protein PA0079 TR:AAG03469 (EMBL:AE004447) (444 aa) fasta scores: E(): 6.6e-30%2C 28.7%25 id in 449 aa. Almost identical to YPO1467 (98.9%25 identity in 450 aa overlap). gene gene973 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0976 YPO0977 YPO0977 YPO0977 1084324 1085868 - conserved hypothetical protein Similar to the C-terminal regions of Vibrio cholerae hypothetical protein VCA0108 TR:Q9KN57 (EMBL:AE004353) (492 aa) fasta scores: E(): 0%2C 43.4%25 id in 488 aa%2C and Pseudomonas aeruginosa conserved hypothetical protein PA1658 TR:AAG05047 (EMBL:AE004593) (491 aa) fasta scores: E(): 0%2C 43.3%25 id in 450 aa. Almost identical to YPO1466 (98.8%25 identity in 516 aa overlap) gene gene974 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0977 YPO0978 YPO0978 YPO0978 1085911 1086411 - conserved hypothetical protein Similar to Vibrio cholerae hypothetical protein VCA0107 TR:Q9KN58 (EMBL:AE004353) (168 aa) fasta scores: E(): 9.8e-18%2C 41.0%25 id in 156 aa%2C and to Pseudomonas aeruginosa conserved hypothetical protein PA1657 TR:AAG05046 (EMBL:AE004593) (168 aa) fasta scores: E(): 1.2e-18%2C 39.2%25 id in 158 aa. Almost identical to YPO1465 (97.6%25 identity in 166 aa overlap) gene gene975 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0978 YPO0979 YPO0979 YPO0979 1087599 1087768 - insertion element protein (partial) Probable gene remnant%2C similar to N-terminal region of Erwinia herbicola putative transposase A TR:AAG53989 (EMBL:AF327446) (91 aa) fasta scores: E(): 4.3e-10%2C 63.2%25 id in 57 aa%2C and Shigella dysenteriae insertion element iso-IS1N protein InsA SW:ISA2_SHIDY (P03829) (90 aa) fasta scores: E(): 0.00048%2C 43.4%25 id in 53 aa%3B~was marked partial mRNA gene976 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0979 YPO0980 YPO0980 YPO0980 1087811 1088155 - putative phage protein (partial) Very weak similarity to Sheep pulmonary adenomatosis virus (Jaagsiekte sheep retrovirus) OrfX TR:Q9IC99 (EMBL:AF128922) (166 aa) fasta scores: E(): 0.19%2C 29.204%25 id in 113 aa%2C and to Ovis aries OrfX Pol TR:AAK38687 (EMBL:AF357971) (179 aa) fasta scores: E(): 1.1%2C 27.434%25 id in 113 aa gene gene977 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0980 YPO0980A YPO0980A insB insB 1088261 1088320 - insertion element protein (partial) Probable gene remnant%2C similar to N-terminal regions of Shigella dysenteriae insertion element protein InsB TR:Q9LA39 (EMBL:AF153317) (131 aa) fasta scores: E(): 4.4e-08%2C 85.0%25 id in 20 aa%2C and Escherichia coli insertion element protein InsB TR:Q9S104 (EMBL:AB024946) (131 aa) fasta scores: E(): 4.4e-07%2C 75.0%25 id in 20 aa%3B~was marked partial gene gene978 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0980A YPO0981 YPO0981 insA insA 1088356 1088619 - insertion element protein Similar to Shigella dysenteriae insertion element iso-IS1N protein InsA SW:ISA2_SHIDY (P03829) (90 aa) fasta scores: E(): 5.7e-26%2C 75.6%25 id in 86 aa%2C and to Escherichia coli insertion element protein InsA TR:Q9S103 (EMBL:AB024946) (90 aa) fasta scores: E(): 7.7e-25%2C 74.4%25 id in 86 aa. Similar to YPO0964 (50.6%25 identity in 87 aa overlap) and YPO0968 (50.6%25 identity in 87 aa overlap). gene gene979 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0981 YPO0982 YPO0982 YPO0982 1088687 1089082 - putative lipoprotein No significant database matches gene gene980 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0982 YPO0983 YPO0983 YPO0983 1089533 1090183 - putative membrane protein Similar to Escherichia coli hypothetical protein YprA SW:YPRA_ECOLI (P13974) (217 aa) fasta scores: E(): 2.1e-08%2C 27.9%25 id in 201 aa%2C and to Bacillus anthracis hypothetical protein TR:Q9RMY6 (EMBL:AF188935) (221 aa) fasta scores: E(): 0.014%2C 28.4%25 id in 208 aa gene gene981 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0983 YPO0984 YPO0984 yspI yspI 1091363 1092013 + N-acylhomoserine lactone synthase YspI Indentical to Yersinia pseudotuberculosis%2Cquorum-sensing signal generator%2C N-acylhomoserine lactone synthase%2C YspI TR:O85823 (EMBL:AF079136) (216 aa) fasta scores: E(): 0%2C 100.0%25 id in 216 aa%2C and similar to Yersinia ruckeri autoinducer synthesis protein YukI SW:YUKI_YERRU (O87970) (216 aa) fasta scores: E(): 0%2C 75.2%25 id in 214 aa%2C and to Yersinia pestis N-acylhomoserine lactone synthase YpeI TR:Q9RH44 (EMBL:AF071401) (214 aa) fasta scores: E(): 0%2C 46.9%25 id in 213 aa gene gene982 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0984 YPO0985 YPO0985 yspR yspR 1091994 1092737 - quorum-sensing transcriptional regulator Similar to Yersinia pseudotuberculosis quorum-sensing transcriptional regulator YspR TR:O85822 (EMBL:AF079136) (247 aa) fasta scores: E(): 0%2C 99.6%25 id in 247 aa%2C to Yersinia ruckeri quorum-sensing transcriptional regulator YruR TR:AAG17669 (EMBL:AF274748) (247 aa) fasta scores: E(): 0%2C 69.9%25 id in 246 aa%2C and to Yersinia pestis quorum-sensing transcriptional regulator YpeR TR:Q9RH45 (EMBL:AF071401) (245 aa) fasta scores: E(): 0%2C 47.7%25 id in 239 aa gene gene983 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0985 YPO0986 YPO0986 YPO0986 1093299 1094675 + putative exported protein No significant database matches to the full length CDS. Similar to Thermotoga maritima hypothetical protein TM0033 TR:Q9WXP0 (EMBL:AE001691) (395 aa) fasta scores: E(): 7.1e-13%2C 27.9%25 id in 427 aa. CDS contains an imperfect amino acid repeat (KDYSPD x3) residues 207 to 224. gene gene984 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0986 YPO0987 YPO0987 YPO0987 1095052 1095885 + putative exported protein no significant database hits to the full length CDS. Similar to internal regions of Streptomyces coelicolor putative dioxygenase SCH69.12 TR:Q9XA22 (EMBL:AL079308) (294 aa) fasta scores: E(): 0.003%2C 29.8%25 id in 198 aa%2C and Streptomyces protocatechuate 3%2C4-dioxygenase beta subunit PcaH TR:Q9ZFA1 (EMBL:AF109386) (257 aa) fasta scores: E(): 0.21%2C 25.9%25 id in 201 aa gene gene985 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0987 YPO0988 YPO0988 YPO0988 1096175 1097398 - putative membrane protein Similar to Shigella flexneri SHI-2 pathogenicity island protein ShiF TR:Q9XCH6 (EMBL:AF141323) (397 aa) fasta scores: E(): 0%2C 58.5%25 id in 381 aa%2C and to Deinococcus radiodurans possible drug transport protein DR2169 TR:Q9RSF5 (EMBL:AE002050) (441 aa) fasta scores: E(): 2.7e-11%2C 25.4%25 id in 409 aa gene gene986 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0988 YPO0989 YPO0989 iucA iucA 1097538 1099306 + putative siderophore biosynthesis protein IucA (pseudogene) Similar to Escherichia coli aerobactin siderophore biosynthesis protein IucA SW:IUCA_ECOLI (Q47316) (575 aa) fasta scores: E(): 0%2C 61.1%25 id in 584 aa%2C and to Shigella flexneri SHI-2 pathogenicity island protein IucA TR:Q9XCH4 (EMBL:AF141323) (593 aa) fasta scores: E(): 0%2C 63.0%25 id in 583 aa. Contains a frameshift after codon 180. The sequence has been checked and is believed to be correct pseudogene gene987 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0989 YPO0991 YPO0991 iucB iucB 1099293 1100243 + putative siderophore biosynthesis protein IucB Similar to Escherichia coli aerobactin siderophore biosynthesis protein IucB SW:IUCB_ECOLI (Q47317) (315 aa) fasta scores: E(): 0%2C 62.8%25 id in 312 aa%2C and to Shigella flexneri SHI-2 pathogenicity island protein IucB TR:Q9XCH3 (EMBL:AF141323) (315 aa) fasta scores: E(): 0%2C 65.0%25 id in 309 aa gene gene988 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0991 YPO0992 YPO0992 iucC iucC 1100240 1101988 + putative siderophore biosynthesis protein IucC Similar to Escherichia coli aerobactin siderophore biosynthesis protein IucC SW:IUCC_ECOLI (Q47318) (580 aa) fasta scores: E(): 0%2C 65.8%25 id in 576 aa%2C and to Shigella flexneri SHI-2 pathogenicity island protein IucC TR:Q9XCH2 (EMBL:AF141323) (580 aa) fasta scores: E(): 0%2C 65.3%25 id in 576 aa gene gene989 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0992 YPO0993 YPO0993 iucD iucD 1101985 1103313 + putative siderophore biosynthesis protein IucD Similar to Escherichia coli L-lysine 6-monooxygenase%2C aerobactin biosynthetic protein IucD SW:IUCD_ECOLI (P11295) (425 aa) fasta scores: E(): 0%2C 59.8%25 id in 423 aa%2C and to Shigella flexneri SHI-2 pathogenicity island protein IucD TR:Q9XCH1 (EMBL:AF141323) (445 aa) fasta scores: E(): 0%2C 59.8%25 id in 433 aa gene gene990 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0993 YPO0994 YPO0994 iutA iutA 1103385 1105565 + putative ferric siderophore receptor Similar to Escherichia coli ferric aerobactin receptor precursor IutA SW:IUTA_ECOLI (P14542) (732 aa) fasta scores: E(): 0%2C 65.8%25 id in 730 aa%2C and to Shigella flexneri SHI-2 pathogenicity island protein IutA TR:Q9XCH0 (EMBL:AF141323) (732 aa) fasta scores: E(): 0%2C 66.0%25 id in 732 aa gene gene991 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0994 YPO0995 YPO0995 YPO0995 1105824 1107257 - Sodium:galactoside symporter family protein Similar to Salmonella typhimurium melibiose permease MelB SW:MELB_SALTY (P30878) (476 aa) fasta scores: E(): 8.4e-25%2C 31.3%25 id in 451 aa%2C and to Bacillus subtilis hypothetical symporter YnaJ SW:YNAJ_BACSU (P94488) (463 aa) fasta scores: E(): 0%2C 31.5%25 id in 445 aa gene gene992 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0995 YPO0996 YPO0996 YPO0996 1107499 1108035 + insertion element IS1661 DNA-binding protein Similar to Escherichia coli insertion element IS1397 hypothetical protein SW:YI9A_ECOLI (Q47309) (173 aa) fasta scores: E(): 4.5e-21%2C 39.6%25 id in 169 aa%2C and to Lactobacillus johnsonii insertion element IS1223 hypothetical protein SW:YI3A_LACJO (Q48585) (177 aa) fasta scores: E(): 8.2e-11%2C 31.7%25 id in 164 aa gene gene993 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0996 YPO0997 YPO0997 YPO0997 1108089 1108874 + transposase for insertion sequence IS1661 Similar to Escherichia coli insertion sequence IS1397 transposase%2C OrfB TR:Q47310 (EMBL:X92970) (240 aa) fasta scores: E(): 0%2C 53.0%25 id in 234 aa gene gene994 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0997 YPO0998 YPO0998 YPO0998 1109070 1111436 - putative membrane protein Similar to Pseudomonas aeruginosa conserved hypothetical protein PA2072 TR:AAG05460 (EMBL:AE004634) (864 aa) fasta scores: E(): 0%2C 43.7%25 id in 773 aa%2C and to C-terminus of Pseudomonas aeruginosa conserved hypothetical protein PA4601 TR:AAG07989 (EMBL:AE004874) (1415 aa) fasta scores: E(): 0%2C 42.2%25 id in 460 aa gene gene995 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0998 YPO0999 YPO0999 YPO0999 1111440 1111637 - putative membrane protein No significant database matches to the full length CDS. Similar to N-terminus of Synechocystis sp hypothetical protein SLR1601 TR:P72987 (EMBL:D90902) (125 aa) fasta scores: E(): 7.3%2C 29.5%25 id in 61 aa gene gene996 http://www.ncbi.nlm.nih.gov/gene/?term=YPO0999 YPO1000 YPO1000 YPO1000 1112076 1113353 + putative drug efflux protein Similar to Escherichia coli acriflavin resistance protein A AcrA SW:ACRA_ECOLI (P31223) (397 aa) fasta scores: E(): 1.9e-31%2C 32.8%25 id in 348 aa%2C and to Pseudomonas aeruginosa multidrug efflux system protein MexE TR:P95421 (EMBL:X99514) (414 aa) fasta scores: E(): 2e-26%2C30.5%25 id in 370 aa gene gene997 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1000 YPO1001 YPO1001 YPO1001 1113366 1116485 + putative integral membrane efflux protein Many paralogues within Yersinia pestis eg. YPO3133 fasta scores: E(): 0%2C 40.1%25 identity in 1054 aa. Similar to Pseudomonas aeruginosa multidrug resistance protein MexB SW:MEXB_PSEAE (P52002) (1046 aa) fasta scores: E(): 0%2C40.3%25 id in 1046 aa%2C and to Campylobacter jejuni transmembrane efflux protein Cj0366c TR:Q9PID6 (EMBL:AL139075) (1040 aa) fasta scores: E(): 0%2C 38.5%25 id in 1037 aa gene gene998 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1001 YPO1002 YPO1002 YPO1002 1116620 1118110 - enterotoxin-like protein N-terminal region similar to Escherichia coli shet2 enterotoxin SenA TR:Q47634 (EMBL:Z54194) (565 aa) fasta scores: E(): 2.3e-11%2C 29.1%25 id in 330 aa%2C and to Shigella flexneri shet2 enterotoxin SenA TR:Q47635 (EMBL:Z54211) (565 aa) fasta scores: E(): 2.3e-11%2C 29.4%25 id in 330 aa gene gene999 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1002 YPO1003 YPO1003 YPO1003 1118388 1118975 + putative exported protein No significant database matches gene gene1000 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1003 YPO1004 YPO1004 yapH yapH 1119829 1130946 + putative autotransporter protein Previously sequenced as Yersinia pestis YapH protein TR:CAC14227 (EMBL:AJ277631) (3705 aa) fasta scores: E(): 0%2C99.6%25 id in 3705 aa. Similar in regions to Escherichia coli YchA protein TR:Q9JMS3 (EMBL:AP001918) (1371 aa) fasta scores: E(): 0%2C 39.1%25 id in 1405 aa%2C and to Escherichia coli adhesin Aida-I precursor SW:AIDA_ECOLI (Q03155) (1286 aa) fasta scores: E(): 0%2C 29.2%25 id in 1286 aa. Contains a possible N-terminal signal sequence. gene gene1001 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1004 YPO1005 YPO1005 YPO1005 1131049 1132929 - putative antigenic leucine-rich repeat protein Similar to neighbouring CDSs YPO1007 and YPO1006. Similar to Salmonella typhimurium leucine-rich repeat protein SlrP TR:Q9XCV2 (EMBL:AF127079) (765 aa) fasta scores: E(): 0%2C 39.0%25 id in 644 aa%2C and to Shigella flexneri 65.4 kDa antigen IpaH 4.5 SW:IPA4_SHIFL (P18009) (574 aa) fasta scores: E(): 0%2C 40.4%25 id in 589 aa gene gene1002 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1005 YPO1006 YPO1006 YPO1006 1133492 1134367 - putative antigenic leucine-rich repeat protein Similar to neighbouring CDSs YPO1005 and YPO1007. Similar to regions of Salmonella typhimurium secreted protein h2 TR:Q9RPH0 (EMBL:AF160727) (788 aa) fasta scores: E(): 2.5e-24%2C 41.9%25 id in 272 aa%2C and to regions of Yersinia pestis outer membrane protein YopM TR:O68701 (EMBL:AF053946) (409 aa) fasta scores: E(): 7e-23%2C 40.5%25 id in 259 aa gene gene1003 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1006 YPO1007 YPO1007 YPO1007 1134575 1136392 - putative antigenic leucine-rich repeat protein Similar to neighbouring CDSs YPO1005 and YPO1006. Similar to Salmonella typhimurium leucine-rich repeat protein SlrP TR:Q9XCV2 (EMBL:AF127079) (765 aa) fasta scores: E(): 0%2C 36.9%25 id in 642 aa%2C and to Shigella flexneri 65.4 kDa antigen IpaH SW:IPA4_SHIFL (P18009) (574 aa) fasta scores: E(): 0%2C 40.4%25 id in 569 aa%2C and to Salmonella typhimurium secreted protein H2 TR:Q9RPH0 (EMBL:AF160727) (788 aa) fasta scores: E(): 0%2C 40.3%25 id in 608 aa gene gene1004 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1007 YPO1008 YPO1008 YPO1008 1137111 1138667 + putative integral membrane efflux protein Similar to Vibrio cholerae hypothetical protein VC0863 TR:Q9KTN8 (EMBL:AE004171) (519 aa) fasta scores: E(): 0%2C 47.5%25 id in 512 aa%2C and to Neisseria gonorrhoeae putative efflux pump component MtrF TR:Q9RNX2 (EMBL:AF176820) (522 aa) fasta scores: E(): 0%2C 37.2%25 id in 524 aa%2C and to Escherichia coli arsenical pump membrane protein ArsB SW:ARB1_ECOLI (P08691) (429 aa) fasta scores: E(): 1.1%2C 26.1%25 id in 111 aa gene gene1005 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1008 YPO1009 YPO1009 YPO1009 1138745 1139977 + probable peptidase Similar to Bacillus subtilis Peptidase T PepT SW:PEPT_BACSU (P55179) (410 aa) fasta scores: E(): 0%2C 39.6%25 id in 396 aa%2C and to Escherichia coli Peptidase T PepT SW:PEPT_ECOLI (P29745) (408 aa) fasta scores: E(): 0%2C 38.2%25 id in 408 aa gene gene1006 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1009 YPO1011 YPO1011 YPO1011 1140365 1142437 + putative TonB-dependent outer membrane receptor Similar to Azospirillum irakense putative outer membrane salicin receptor salC TR:Q9LAE4 (EMBL:AF143227) (726 aa) fasta scores: E(): 0%2C 25.3%25 id in 730 aa%2C and to Escherichia coli probable TonB-dependent receptor YncD SW:YNCD_ECOLI (P76115) (700 aa) fasta scores: E(): 2.1e-15%2C22.9%25 id in 721 aa gene gene1007 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1011 YPO1012 YPO1012 YPO1012 1142618 1145928 + putative peptide/polyketide synthase subunit (pseudogene) This CDS is disrupted by the insertion of IS100 element. Similar to regions of polyketide synthases/peptide synthetases eg. Bacillus subtilis MycA TR:Q9R9J1 (EMBL:AF184956) (3971 aa) fasta scores: E(): 0%2C 29.5%25 id in 1112 aa%2C Streptomyces coelicolor polyketide synthase SC3f7.12 TR:O54155 (EMBL:AL021409) (2297 aa) fasta scores: E(): 0%2C 31.1%25 id in 1199 aa and Sorangium cellulosum polyketide synthase EpoC TR:Q9L8C7 (EMBL:AF210843) (7257 aa) fasta scores: E(): 0%2C 39.3%25 id in 499 aa. pseudogene gene1008 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1012 YPO1013 YPO1013 y1093 y1093 1146015 1147037 + transposase for insertion sequence IS100 Similar to Escherichia coli transposase for insertion sequence element IS21 IstA SW:ISTA_ECOLI (P15025) (390 aa) fasta scores: E(): 3e-27%2C 33.1%25 id in 329 aa. Identical to the previously sequenced Yersinia pestis%2CYersinia pseudotuberculosis%2C and Escherichia coli pesticin plasmid insertion sequence transposase Y1055 TR:P74993 (EMBL:U59875) (340 aa) fasta scores: E(): 0%2C 100.0%25 id in 340 aa gene gene1009 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1013 YPO1014 YPO1014 ypmt1.57c ypmt1.57c 1147034 1147816 + insertion sequence IS100%2C ATP-binding protein Similar to Escherichia coli insertion sequence IS21 putative ATP-binding protein%2C IstB SW:ISTB_ECOLI (P15026) (265 aa) fasta scores: E(): 0%2C 47.4%25 id in 249 aa. Also almost identical to Yersinia pestis and Escherichia coli putative IS100 transposase ypmt1.57c TR:Q9R3L5 (EMBL:AL117211) (260 aa) fasta scores: E(): 0%2C 99.6%25 id in 260 aa. gene gene1010 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1014 YPO1014a YPO1014a YPO1014a 1147881 1148057 + prepilin peptidase (partial) Similar to the C-terminal regions of Escherichia coli prepilin peptidase dependent protein A PpdA SW:PPDA_ECOLI (P33554) (156 aa) fasta scores: E(): 0.00089%2C41.304%25 id in 46 aa%2C and Escherichia coli O157:H7 prepilin peptidase dependent protein A ECS3683 TR:BAB37106 (EMBL:AP002563) (156 aa) fasta scores: E(): 0.00089%2C41.304%25 id in 46 aa. Probable gene remnant resulting from insertion of the upstream IS element and recombination.%3B~was marked partial gene gene1011 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1014a YPO1015 YPO1015 YPO1015 1148051 1148659 + putative prepilin peptidase dependent protein Similar to Escherichia coli prepilin peptidase dependent protein B SW:PPDB_ECOLI (P08371) (187 aa) fasta scores: E(): 5e-17%2C 30.4%25 id in 191 aa%2C and N-terminus of Pseudomonas aeruginosa general secretion pathway protein J precursor SW:GSPJ_PSEAE (Q00517) (237 aa) fasta scores: E(): 0.19%2C 39.3%25 id in 61 aa gene gene1012 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1015 YPO1016 YPO1016 YPO1016 1148656 1149126 + putative membrane protein No significant database matches gene gene1013 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1016 YPO1017 YPO1017 YPO1017 1149114 1149524 + putative prepilin peptidase dependent protein Weakly similar to Escherichia coli prepilin peptidase dependent protein C precursor PpdC SW:PPDC_ECOLI (P08372) (107 aa) fasta scores: E(): 0.42%2C 23.7%25 id in 114 aa%2C and to Pseudomonas aeruginosa PilV TR:Q57003 (EMBL:L36117) (185 aa) fasta scores: E(): 0.91%2C 32.8%25 id in 58 aa gene gene1014 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1017 YPO1018 YPO1018 recC recC 1149659 1153030 + exodeoxyribonuclease V gamma chain Similar to Escherichia coli exodeoxyribonuclease V gamma chain RecC SW:EX5C_ECOLI (P07648) (1122 aa) fasta scores: E(): 0%2C 63.5%25 id in 1123 aa%2C and to Vibrio cholerae exodeoxyribonuclease V%2C 125 kDa subunit VC2322 TR:Q9KPP4 (EMBL:AE004302) (1148 aa) fasta scores: E(): 0%2C 45.8%25 id in 1130 aa gene gene1015 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1018 YPO1019 YPO1019 ptr ptr 1153112 1156000 + protease III precursor Similar to Escherichia coli protease III precursor PtrA SW:PTRA_ECOLI (P05458) (962 aa) fasta scores: E(): 0%2C63.0%25 id in 947 aa%2C and to Vibrio cholerae peptidase%2Cinsulinase family VC2072 TR:Q9KQC8 (EMBL:AE004281) (939 aa) fasta scores: E(): 0%2C 28.0%25 id in 919 aa gene gene1016 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1019 YPO1020 YPO1020 recB recB 1155997 1159659 + exodeoxyribonuclease V beta chain Similar to Escherichia coli exodeoxyribonuclease V beta chain RecB SW:EX5B_ECOLI (P08394) (1180 aa) fasta scores: E(): 0%2C 62.0%25 id in 1190 aa%2C and to Vibrio cholerae exodeoxyribonuclease V%2C 135 kDa subunit VC2320 TR:Q9KPP6 (EMBL:AE004302) (1208 aa) fasta scores: E(): 0%2C 48.0%25 id in 1203 aa gene gene1017 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1020 YPO1021 YPO1021 recD recD 1159656 1161614 + exodeoxyribonuclease V alpha chain Similar to Escherichia coli exodeoxyribonuclease V alpha chain RecD SW:EX5A_ECOLI (P04993) (608 aa) fasta scores: E(): 0%2C 56.7%25 id in 638 aa%2C and to Vibrio cholerae exodeoxyribonuclease V%2C 67 kDa subunit VC2319 TR:Q9KPP7 (EMBL:AE004302) (706 aa) fasta scores: E(): 0%2C 45.3%25 id in 727 aa gene gene1018 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1021 YPO1022 YPO1022 argA argA 1161769 1163094 - amino-acid acetyltransferase Similar to Escherichia coli amino-acid acetyltransferase ArgA SW:ARGA_ECOLI (P08205) (443 aa) fasta scores: E(): 0%2C 87.3%25 id in 441 aa%2C and to Vibrio cholerae N-acetylglutamate synthase VC2316 TR:Q9KPQ0 (EMBL:AE004301) (456 aa) fasta scores: E(): 0%2C 65.8%25 id in 445 aa gene gene1019 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1022 YPO1023 YPO1023 YPO1023 1163330 1164580 + N-acetylmuramoyl-L-alanine amidase AmiC precursor Similar to Escherichia coli N-acetylmuramoyl-L-alanine amidase AmiC precursor SW:AMIC_ECOLI (Q46929) (417 aa) fasta scores: E(): 0%2C 70.4%25 id in 419 aa%2C and to Neisseria meningitidis N-acetylmuramoyl-L-alanine amidase AmiC or NMA2028 TR:Q9JT18 (EMBL:AL162757) (416 aa) fasta scores: E(): 0%2C49.9%25 id in 421 aa gene gene1020 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1023 YPO1025 YPO1025 YPO1025 1165302 1166474 + membrane-bound lytic murein transglycosylase A precursor Similar to Escherichia coli membrane-bound lytic murein transglycosylase A precursor SW:MLTA_ECOLI (P46885) (365 aa) fasta scores: E(): 0%2C 69.9%25 id in 366 aa%2C and to Vibrio cholerae membrane-bound lytic murein transglycosylase A precursor TR:Q9KPQ4 (EMBL:AE004301) (368 aa) fasta scores: E(): 0%2C 46.0%25 id in 359 aa gene gene1021 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1025 YPO1026 YPO1026 YPO1026 1166617 1167444 + conserved hypothetical protein Similar to Escherichia coli hypothetical protein YgdL SW:YGDL_ECOLI (Q46927) (268 aa) fasta scores: E(): 0%2C80.5%25 id in 267 aa%2C and to Vibrio cholerae HesA/MoeB/ThiF family protein VC2311 TR:Q9KPQ5 (EMBL:AE004301) (273 aa) fasta scores: E(): 0%2C 65.8%25 id in 263 aa gene gene1022 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1026 YPO1027 YPO1027 YPO1027 1167480 1167923 - conserved hypothetical protein Similar to Escherichia coli hypothetical protein YgdK SW:YGDK_ECOLI (Q46926) (147 aa) fasta scores: E(): 5.7e-30%2C 59.0%25 id in 139 aa%2C and to Vibrio cholerae hypothetical protein VC2310 TR:Q9KPQ6 (EMBL:AE004301) (144 aa) fasta scores: E(): 3.5e-19%2C 43.1%25 id in 144 aa gene gene1023 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1027 YPO1028 YPO1028 YPO1028 1168058 1169377 - putative aminotransferase class V Similar to Escherichia coli ORF_O401 TR:Q46925 (EMBL:U29581) (401 aa) fasta scores: E(): 0%2C 67.1%25 id in 401 aa%2C and to Vibrio cholerae aminotransferase%2C class V VC2309 TR:Q9KPQ7 (EMBL:AE004301) (404 aa) fasta scores: E(): 0%2C 51.5%25 id in 396 aa gene gene1024 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1028 YPO1029 YPO1029 gcvA gcvA 1169923 1170840 + glycine cleavage system transcriptional activator Similar to Escherichia coli glycine cleavage system transcriptional activator GcvA SW:GCVA_ECOLI (P32064) (305 aa) fasta scores: E(): 0%2C 88.2%25 id in 304 aa%2C and to Vibrio cholerae transcriptional regulator%2C LysR family VC0896 TR:Q9KTK6 (EMBL:AE004173) (306 aa) fasta scores: E(): 0%2C69.3%25 id in 296 aa gene gene1025 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1029 YPO1030 YPO1030 YPO1030 1171006 1171401 + conserved hypothetical protein Similar to Escherichia coli hypothetical protein YgdD SW:YGDD_ECOLI (P32065) (131 aa) fasta scores: E(): 0%2C71.8%25 id in 131 aa gene gene1026 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1030 YPO1031 YPO1031 YPO1031 1171394 1172500 + conserved hypothetical protein Similar to Escherichia coli hypothetical protein YgdE SW:YGDE_ECOLI (P32066) (366 aa) fasta scores: E(): 0%2C78.1%25 id in 365 aa%2C and to Haemophilus influenzae hypothetical protein HI1195 SW:YGDE_HAEIN (P45100) (363 aa) fasta scores: E(): 0%2C 60.9%25 id in 358 aa gene gene1027 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1031 YPO1032 YPO1032 exo exo 1172751 1173506 - exodeoxyribonuclease IX Similar to Escherichia coli exodeoxyribonuclease IX Xni or Exo SW:EX9_ECOLI (P38506) (281 aa) fasta scores: E(): 0%2C 71.7%25 id in 247 aa%2C and to Vibrio cholerae exodeoxyribonuclease IX VC0898 TR:Q9KTK4 (EMBL:AE004173) (283 aa) fasta scores: E(): 0%2C 53.9%25 id in 254 aa gene gene1028 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1032 YPO1033 YPO1033 YPO1033 1173766 1175130 - conserved hypothetical protein Similar to Escherichia coli hypothetical protein YgdH SW:YGDH_ECOLI (P37350) (454 aa) fasta scores: E(): 0%2C82.6%25 id in 454 aa%2C and to Vibrio cholerae hypothetical protein VC0899 TR:Q9KTK3 (EMBL:AE004173) (457 aa) fasta scores: E(): 0%2C 69.9%25 id in 455 aa gene gene1029 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1033 YPO1034 YPO1034 YPO1034 1175283 1176128 - conserved hypothetical protein Similar to Escherichia coli hypothetical protein YqcD SW:YQCD_ECOLI (Q46920) (282 aa) fasta scores: E(): 0%2C75.9%25 id in 282 aa%2C and to Vibrio cholerae hypothetical protein VC0902 TR:Q9KTK0 (EMBL:AE004174) (287 aa) fasta scores: E(): 0%2C 64.2%25 id in 282 aa gene gene1030 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1034 YPO1035 YPO1035 syd syd 1176266 1176811 + Syd protein Similar to Escherichia coli Syd protein SW:SYDP_ECOLI (P43526) (181 aa) fasta scores: E(): 0%2C 58.0%25 id in 174 aa%2C and to Vibrio cholerae Syd protein VC0903 TR:Q9KTJ9 (EMBL:AE004174) (198 aa) fasta scores: E(): 0%2C50.0%25 id in 176 aa gene gene1031 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1035 YPO1036 YPO1036 tnp tnp 1177501 1177959 + transposase for the IS1541 insertion element Similar to Salmonella typhimurium%2C and Salmonella typhi transposase for insertion sequence IS200 TnpA SW:T200_SALTY (Q57334) (152 aa) fasta scores: E(): 0%2C 94.1%25 id in 152 aa. Identical to the Yersinia pseudotuberculosis IS1541 element transposase Tnp TR:Q9X9F5 (EMBL:AJ238014) (152 aa) fasta scores: E(): 0%2C 100.0%25 id in 152 aa gene gene1033 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1036 YPO1037 YPO1037 YPO1037 1178213 1178545 + conserved hypothetical protein Similar to Escherichia coli hypothetical protein YqcC SW:YQCC_ECOLI (Q46919) (109 aa) fasta scores: E(): 1.3e-15%2C 41.3%25 id in 109 aa%2C and to the N-terminal region of Erwinia carotovora exoenzyme regulation regulon ORF1 SW:YQCB_ERWCA (Q47417) (376 aa) fasta scores: E(): 1.8e-16%2C67.1%25 id in 70 aa. Note that the Erwinia carotovora paralogue is fused to the downstream gene gene gene1034 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1037 YPO1038 YPO1038 YPO1038 1178545 1179318 + Conserved hypothetical protein Similar to Escherichia coli hypothetical protein YqcB SW:YQCB_ECOLI (Q46918) (260 aa) fasta scores: E(): 0%2C69.3%25 id in 257 aa%2C and to the C-terminal region of Erwinia carotovora exoenzyme regulation regulon ORF1 SW:YQCB_ERWCA (Q47417) (376 aa) fasta scores: E(): 0%2C 76.3%25 id in 257 aa. Note that the Erwinia carotovora paralogue is fused to the upstream gene gene gene1035 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1038 YPO1039 YPO1039 YPO1039 1179346 1179795 + conserved hypothetical protein Similar to Escherichia coli hypothetical protein TR:Q46917 (EMBL:U29581) (149 aa) fasta scores: E(): 0%2C66.2%25 id in 148 aa%2C and to Erwinia carotovora SCRI193 TR:Q47418 (EMBL:X79474) (151 aa) fasta scores: E(): 0%2C68.9%25 id in 148 aa gene gene1036 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1039 YPO1040 YPO1040 YPO1040 1179885 1180274 - conserved hypothetical protein Similar to Escherichia coli hypothetical protein YaeH SW:YAEH_ECOLI (P37048) (128 aa) fasta scores: E(): 0%2C85.7%25 id in 126 aa%2C and to Vibrio cholerae hypothetical protein VC2264 TR:Q9KPU8 (EMBL:AE004298) (137 aa) fasta scores: E(): 1.9e-27%2C 64.3%25 id in 126 aa gene gene1037 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1040 YPO1041 YPO1041 dapD dapD 1180398 1181222 - 2%2C3%2C4%2C5-tetrahydropyridine-2-carboxylate N-succinyltransferase Similar to Escherichia coli 2%2C3%2C4%2C5-tetrahydropyridine-2-carboxylate N-succinyltransferase dapD SW:DAPD_ECOLI (P03948) (274 aa) fasta scores: E(): 0%2C 92.3%25 id in 274 aa%2C and to Mycobacterium bovis 2%2C3%2C4%2C5-tetrahydropyridine-2-carboxylate N-succinyltransferase dapD SW:DAPD_MYCBO (P56220) (274 aa) fasta scores: E(): 0%2C 93.8%25 id in 274 aa gene gene1038 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1041 YPO1042 YPO1042 glnD glnD 1181397 1184135 - [protein-PII] uridylyltransferase Similar to Escherichia coli [protein-PII] uridylyltransferase GlnD SW:GLND_ECOLI (P27249) (890 aa) fasta scores: E(): 0%2C 76.5%25 id in 880 aa gene gene1039 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1042 YPO1043 YPO1043 ampM ampM 1184138 1184929 - methionine aminopeptidase Similar to Escherichia coli methionine aminopeptidase SW:AMPM_ECOLI (P07906) (264 aa) fasta scores: E(): 0%2C 84.0%25 id in 263 aa gene gene1040 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1043 YPO1044 YPO1044 rpsB rpsB 1185364 1186089 + 30S ribosomal protein S2 Similar to Escherichia coli 30S ribosomal protein S2 RpsB SW:RS2_ECOLI (P02351) (240 aa) fasta scores: E(): 0%2C93.8%25 id in 240 aa gene gene1041 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1044 YPO1045 YPO1045 tsf tsf 1186217 1187074 + elongation factor Ts Similar to Escherichia coli elongation factor Ts Tsf SW:EFTS_ECOLI (P02997) (282 aa) fasta scores: E(): 0%2C 78.4%25 id in 282 aa gene gene1042 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1045 YPO1046 YPO1046 pyrH pyrH 1187283 1188008 + uridylate kinase Similar to Escherichia coli uridylate kinase PyrH SW:PYRH_ECOLI (P29464) (240 aa) fasta scores: E(): 0%2C 90.8%25 id in 240 aa gene gene1043 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1046 YPO1047 YPO1047 b0172 b0172 1188144 1188701 + ribosome recycling factor Similar to Escherichia coli ribosome recycling factor SW:RRF_ECOLI (P16174) (185 aa) fasta scores: E(): 0%2C80.5%25 id in 185 aa gene gene1044 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1047 YPO1048 YPO1048 b0173 b0173 1188915 1190111 + 1-deoxy-D-xylulose 5-phosphate reductoisomerase Similar to Escherichia coli 1-deoxy-D-xylulose 5-phosphate reductoisomerase SW:DXR_ECOLI (P45568) (398 aa) fasta scores: E(): 0%2C 72.2%25 id in 396 aa gene gene1045 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1048 YPO1049 YPO1049 rth rth 1190335 1191093 + undecaprenyl pyrophosphate synthetase Similar to Escherichia coli undecaprenyl pyrophosphate synthetase SW:UPPS_ECOLI (Q47675) (253 aa) fasta scores: E(): 0%2C 78.8%25 id in 245 aa gene gene1046 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1049 YPO1050 YPO1050 cds cds 1191103 1191951 + phosphatidate cytidylyltransferase Similar to Escherichia coli phosphatidate cytidylyltransferase cdsA or cds SW:CDSA_ECOLI (P06466) (249 aa) fasta scores: E(): 0%2C 75.2%25 id in 246 aa gene gene1047 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1050 YPO1051 YPO1051 YPO1051 1191980 1193335 + putative membrane protein Similar to Escherichia coli hypothetical 49.1 kDa protein in cdsA-hlpA intergenic region SW:YAEL_ECOLI (P37764) (450 aa) fasta scores: E(): 0%2C 77.6%25 id in 451 aa%2Cand to Neisseria meningitidis putative integral membrane protein NMA0084 TR:Q9JX32 (EMBL:AL162752) (446 aa) fasta scores: E(): 0%2C 39.4%25 id in 452 aa gene gene1048 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1051 YPO1052 YPO1052 YPO1052 1193372 1195759 + putative surface antigen Similar to Photorhabdus luminescens outer membrane antigen Oma TR:Q9S341 (EMBL:AJ236920) (797 aa) fasta scores: E(): 0%2C 80.4%25 id in 797 aa%2C and to Haemophilus influenzae protective surface antigen D15 precursor SW:D151_HAEIN (P46024) (797 aa) fasta scores: E(): 0%2C 44.3%25 id in 804 aa gene gene1049 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1052 YPO1053 YPO1053 ompH ompH 1195917 1196414 + cationic 19 kDa outer membrane protein precursor Similar to Yersinia enterocolitica cationic 19 kDa outer membrane protein precursor OmpH SW:OMPH_YEREN (P31519) (164 aa) fasta scores: E(): 0%2C 93.3%25 id in 165 aa%2Cand to Escherichia coli histone-like protein Hlp-1 precursor SW:HLPA_ECOLI (P11457) (161 aa) fasta scores: E(): 1.3e-30%2C 67.1%25 id in 167 aa gene gene1050 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1053 YPO1054 YPO1054 firA firA 1196418 1197440 + UDP-3-o-[3-hydroxymyristoyl] glucosamine N-acyltransferase Similar to Escherichia coli UDP-3-o-[3-hydroxymyristoyl] glucosamine N-acyltransferase SW:LPXD_ECOLI (P21645) (340 aa) fasta scores: E(): 0%2C 82.6%25 id in 339 aa%2C and to Yersinia enterocolitica UDP-3-o-[3-hydroxymyristoyl] glucosamine N-acyltransferase SW:LPXD_YEREN (P32203) (339 aa) fasta scores: E(): 0%2C 95.3%25 id in 339 aa gene gene1051 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1054 YPO1055 YPO1055 fabZ fabZ 1197598 1198143 + (3R)-hydroxymyristoyl-(acyl carrier protein) dehydratase (EC 4.2.1.-) Similar to Escherichia coli FabZ SW:FABZ_ECOLI (P21774) (151 aa) fasta scores: E(): 0%2C 88.7%25 id in 151 aa%2Cand to Yersinia enterocolitica FabZ SW:FABZ_YEREN (P32205) (201 aa) fasta scores: E(): 0%2C 90.1%25 id in 181 aa gene gene1052 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1055 YPO1056 YPO1056 lpxA lpxA 1198147 1198935 + acyl-[acyl-carrier-protein]--UDP-N-acetylglucosa m ine O-acyltransferase Similar to Escherichia coli acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase LpxA SW:LPXA_ECOLI (P10440) (262 aa) fasta scores: E(): 0%2C 81.3%25 id in 262 aa%2C and to Yersinia enterocolitica acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase LpxA SW:LPXA_YEREN (P32201) (262 aa) fasta scores: E(): 0%2C 90.1%25 id in 262 aa gene gene1053 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1056 YPO1057 YPO1057 lpxB lpxB 1198939 1200123 + lipid-A-disaccharide synthase Similar to Escherichia coli lipid-A-disaccharide synthase LpxB SW:LPXB_ECOLI (P10441) (382 aa) fasta scores: E(): 0%2C 82.2%25 id in 377 aa gene gene1054 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1057 YPO1058 YPO1058 b0183 b0183 1200120 1200716 + ribonuclease HII Similar to Escherichia coli ribonuclease hII SW:RNH2_ECOLI (P10442) (198 aa) fasta scores: E(): 0%2C 84.5%25 id in 193 aa gene gene1055 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1058 YPO1059 YPO1059 dnaE dnaE 1200846 1204361 + DNA polymerase III%2C alpha chain Similar to Escherichia coli DNA polymerase III%2Calpha chain DnaE SW:DP3A_ECOLI (P10443) (1160 aa) fasta scores: E(): 0%2C 89.0%25 id in 1160 aa gene gene1056 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1059 YPO1060 YPO1060 accA accA 1204374 1205333 + acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha Similar to Escherichia coli acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha AccA SW:ACCA_ECOLI (P30867) (318 aa) fasta scores: E(): 0%2C 90.5%25 id in 317 aa gene gene1057 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1060 YPO1061 YPO1061 YPO1061 1205517 1205915 + conserved hypothetical protein Similar to Escherichia coli hypothetical protein YaeR SW:YAER_ECOLI (P52096) (129 aa) fasta scores: E(): 0%2C71.1%25 id in 128 aa%2C and to Vibrio cholerae glyoxylase I family protein VCA0890 TR:Q9KL58 (EMBL:AE004416) (127 aa) fasta scores: E(): 1.1e-27%2C 59.2%25 id in 125 aa gene gene1058 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1061 YPO1062 YPO1062 YPO1062 1205917 1207299 + conserved hypothetical protein Similar to Escherichia coli putative cell cycle protein MesJ SW:MESJ_ECOLI (P52097) (432 aa) fasta scores: E(): 0%2C 55.2%25 id in 440 aa gene gene1059 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1062 YPO1063 YPO1063 YPO1063 1207536 1207853 + putative cytochrome Similar to Vibrio cholerae cytochrome C554 VC2241 TR:Q9KPX1 (EMBL:AE004296) (107 aa) fasta scores: E(): 1.6e-14%2C 50.5%25 id in 105 aa%2C and to Shewanella violacea soluble cytochrome CB CytCB TR:Q9RHJ5 (EMBL:AB032405) (206 aa) fasta scores: E(): 9.1e-10%2C 37.7%25 id in 106 aa%2C and to Pseudomonas aeruginosa cytochrome C4 precursor PA5490 TR:AAG08875 (EMBL:AE004961) (201 aa) fasta scores: E(): 2.5e-09%2C 40.4%25 id in 104 aa gene gene1060 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1063 YPO1064 YPO1064 YPO1064 1208118 1208378 - conserved hypothetical protein Similar to Escherichia coli ROF protein SW:ROF_ECOLI (P52098) (84 aa) fasta scores: E(): 1.4e-26%2C 73.8%25 id in 84 aa gene gene1061 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1064 YPO1064a YPO1064a YPO1064a 1208365 1208565 - conserved hypothetical protein Similar to Escherichia coli hypothetical protein YaeP SW:YAEP_ECOLI (P52099) (66 aa) fasta scores: E(): 1.5e-18%2C 74.2%25 id in 66 aa gene gene1062 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1064a YPO1065 YPO1065 YPO1065 1208807 1209355 + conserved hypothetical protein Similar to Escherichia coli hypothetical protein YaeQ SW:YAEQ_ECOLI (P52100) (181 aa) fasta scores: E(): 0%2C61.8%25 id in 178 aa gene gene1063 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1065 YPO1066 YPO1066 YPO1066 1209358 1209774 + conserved hypothetical protein Similar to Escherichia coli hypothetical protein YaeJ SW:YAEJ_ECOLI (P40711) (140 aa) fasta scores: E(): 0%2C65.2%25 id in 135 aa%2C and to Pseudomonas putida hypothetical protein SW:YAEJ_PSEPU (P45388) (137 aa) fasta scores: E(): 8.6e-31%2C 65.2%25 id in 135 aa%2C and to Streptomyces coelicolor hypothetical protein SCD95A.11 TR:Q9KXW3 (EMBL:AL357432) (145 aa) fasta scores: E(): 7.4e-13%2C 41.5%25 id in 135 aa gene gene1064 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1066 YPO1067 YPO1067 cutF cutF 1209814 1210542 + putative copper homeostasis lipoprotein Similar to Escherichia coli copper homeostasis protein CutF precursor SW:CUTF_ECOLI (P40710) (236 aa) fasta scores: E(): 0%2C 48.3%25 id in 230 aa gene gene1065 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1067 YPO1068 YPO1068 drpA drpA 1210676 1212394 - prolyl-tRNA synthetase Similar to Escherichia coli prolyl-tRNA synthetase SW:SYP_ECOLI (P16659) (572 aa) fasta scores: E(): 0%2C 84.2%25 id in 571 aa gene gene1066 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1068 YPO1069 YPO1069 YPO1069 1212498 1213205 - conserved hypothetical protein Similar to Escherichia coli hypothetical protein YaeB SW:YAEB_ECOLI (P28634) (235 aa) fasta scores: E(): 0%2C71.1%25 id in 235 aa%2C and to Vibrio cholerae hypothetical protein VC0876 TR:Q9KTM6 (EMBL:AE004172) (231 aa) fasta scores: E(): 0%2C 50.0%25 id in 232 aa gene gene1067 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1069 YPO1070 YPO1070 rcsF rcsF 1213202 1213609 - putative lipoprotein May be involved in regulation of exopolysaccharide biosynthesis. Similar to Escherichia coli RcsF protein rcsF SW:RCSF_ECOLI (P28633) (133 aa) fasta scores: E(): 2.1e-27%2C63.5%25 id in 137 aa gene gene1068 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1070 YPO1071 YPO1071 YPO1071 1213727 1214542 - putative lipoprotein Similar to Escherichia coli putative lipoprotein YaeC precursor SW:YAEC_ECOLI (P28635) (271 aa) fasta scores: E(): 0%2C 90.4%25 id in 271 aa%2C and to Vibrio cholerae lipoprotein VC0905 TR:Q9KTJ7 (EMBL:AE004174) (275 aa) fasta scores: E(): 0%2C 68.3%25 id in 271 aa gene gene1069 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1071 YPO1072 YPO1072 YPO1072 1214606 1215259 - ABC transporter permease protein Similar to Escherichia coli hypothetical ABC transporter permease protein YaeE SW:YAEE_ECOLI (P31547) (217 aa) fasta scores: E(): 0%2C 90.8%25 id in 217 aa%2C and to Vibrio cholerae ABC transporter%2C permease protein VC0906 TR:Q9KTJ6 (EMBL:AE004174) (225 aa) fasta scores: E(): 0%2C54.3%25 id in 210 aa gene gene1070 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1072 YPO1073 YPO1073 abc abc 1215252 1216283 - ABC transporter ATP-binding protein Similar to Escherichia coli ATP-binding protein Abc SW:ABC_ECOLI (P30750) (343 aa) fasta scores: E(): 0%2C 80.2%25 id in 343 aa gene gene1071 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1073 YPO1074 YPO1074 YPO1074 1216470 1217036 + conserved hypothetical protein Similar to Escherichia coli hypothetical protein YaeD SW:YAED_ECOLI (P31546) (191 aa) fasta scores: E(): 0%2C80.3%25 id in 188 aa%2C and to Escherichia coli O157:H7 phosphatase YaeD TR:BAA93568 (EMBL:AB035926) (191 aa) fasta scores: E(): 0%2C 80.3%25 id in 188 aa gene gene1072 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1074 YPO1075 YPO1075 YPO1075 1223177 1223980 + putative aldo/keto reductase Similar to Escherichia coli hypothetical oxidoreductase in aspU-mltD intergenic region YafB SW:YAFB_ECOLI (P30863) (267 aa) fasta scores: E(): 0%2C 74.9%25 id in 267 aa%2C and to Corynebacterium sp 2%2C5-diketo-D-gluconic acid reductase TR:P06632 (EMBL:M12799) (278 aa) fasta scores: E(): 6.3e-31%2C 41.6%25 id in 255 aa gene gene1076 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1075 YPO1076 YPO1076 YPO1076 1224015 1224479 + hypothetical protein no significant database hits gene gene1077 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1076 YPO1077 YPO1077 YPO1077 1224840 1225622 + conserved hypothetical protein Similar to Escherichia coli hypothetical protein YafD SW:YAFD_ECOLI (P30865) (259 aa) fasta scores: E(): 0%2C75.2%25 id in 254 aa gene gene1078 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1077 YPO1078 YPO1078 dniR dniR 1225664 1227091 - membrane-bound lytic murein transglycosylase D precursor Similar to Escherichia coli membrane-bound lytic murein transglycosylase D precursor MltD SW:MLTD_ECOLI (P23931) (452 aa) fasta scores: E(): 0%2C 63.4%25 id in 470 aa gene gene1079 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1078 YPO1079 YPO1079 gloB gloB 1227124 1227879 - putative hydroxyacylglutathione hydrolase Similar to Escherichia coli probable hydroxyacylglutathione hydrolase GloB SW:GLO2_ECOLI (Q47677) (251 aa) fasta scores: E(): 0%2C 57.4%25 id in 251 aa%2Cand to Arabidopsis thaliana hydroxyacylglutathione hydrolase%2C mitochondrial precursor Glx2-1 SW:GL2M_ARATH (O24495) (331 aa) fasta scores: E(): 2.9e-32%2C 39.0%25 id in 236 aa gene gene1080 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1079 YPO1080 YPO1080 YPO1080 1227924 1228643 + conserved hypothetical protein Similar to Escherichia coli hypothetical protein YafS SW:YAFS_ECOLI (P75672) (240 aa) fasta scores: E(): 0%2C63.6%25 id in 236 aa%2C and to Vibrio cholerae hypothetical protein VC2235 TR:Q9KPX7 (EMBL:AE004295) (245 aa) fasta scores: E(): 0%2C 44.2%25 id in 233 aa gene gene1081 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1080 YPO1081 YPO1081 dasF dasF 1228698 1229162 - ribonuclease HI Similar to Escherichia coli ribonuclease HI SW:RNH_ECOLI (P00647) (155 aa) fasta scores: E(): 0%2C 84.8%25 id in 151 aa gene gene1082 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1081 YPO1082 YPO1082 dnaQ dnaQ 1229232 1229996 + DNA polymerase III%2C epsilon chain Similar to Escherichia coli DNA polymerase III%2Cepsilon chain SW:DP3E_ECOLI (P03007) (243 aa) fasta scores: E(): 0%2C 75.9%25 id in 237 aa gene gene1083 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1082 YPO1083 YPO1083 YPO1083 1230242 1231726 - putative permease Similar to Pseudomonas aeruginosa probable permease TR:AAG03865 (EMBL:AE004485) (575 aa) fasta scores: E(): 0%2C39.1%25 id in 465 aa%2C and to Streptomyces coelicolor putative transmembrane transporter SC1A6.06 TR:O69811 (EMBL:AL023496) (522 aa) fasta scores: E(): 0%2C 32.6%25 id in 481 aa gene gene1084 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1083 YPO1084 YPO1084 YPO1084 1232065 1232283 + conserved hypothetical protein (pseudogene) Appears to have been interrupted by the insertion of downstream IS100. Similar to N-terminus of Pseudomonas aeruginosa hypothetical protein TR:AAG04906 (EMBL:AE004580) (308 aa) fasta scores: E(): 6.7e-13%2C 56.5%25 id in 69 aa%2C and to N-terminus of Schizosaccharomyces pombe hypothetical 36.2 kDa protein C19G12.03 in chromosome I SPAC19G12.03 TR:O13842 (EMBL:Z97209) (320 aa) fasta scores: E(): 3.6e-06%2C 44.4%25 id in 63 aa pseudogene gene1085 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1084 YPO1085 YPO1085 ypmt1.57c ypmt1.57c 1232349 1233131 - insertion sequence IS100%2C ATP-binding protein Similar to Escherichia coli insertion sequence IS21 putative ATP-binding protein%2C IstB SW:ISTB_ECOLI (P15026) (265 aa) fasta scores: E(): 0%2C 47.4%25 id in 249 aa. Also almost identical to Yersinia pestis and Escherichia coli putative IS100 transposase ypmt1.57c TR:Q9R3L5 (EMBL:AL117211) (260 aa) fasta scores: E(): 0%2C 99.6%25 id in 260 aa. gene gene1086 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1085 YPO1086 YPO1086 y1093 y1093 1233128 1234150 - transposase for insertion sequence IS100 Similar to Escherichia coli transposase for insertion sequence element IS21 IstA SW:ISTA_ECOLI (P15025) (390 aa) fasta scores: E(): 3e-27%2C 33.1%25 id in 329 aa. Identical to the previously sequenced Yersinia pestis%2CYersinia pseudotuberculosis%2C and Escherichia coli pesticin plasmid insertion sequence transposase Y1055 TR:P74993 (EMBL:U59875) (340 aa) fasta scores: E(): 0%2C 100.0%25 id in 340 aa gene gene1087 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1086 YPO1086a YPO1086a intA intA 1234239 1234340 - phage integrase (partial) Probable gene remnant. Similar to N-terminal regions of Escherichia coli prophage Cp4-57 integrase IntA SW:INTA_ECOLI (P32053) (413 aa) fasta scores: E(): 2.8e-05%2C61.765%25 id in 34 aa%2C and Haemophilus influenzae Cp4-57 integrase-like protein TR:Q9L8P3 (EMBL:AF198256) (408 aa) fasta scores: E(): 0.00043%2C 52.941%25 id in 34 aa. CDS is truncated by the insertion of the downstream IS100 element and subsequent recombination events%3B~was marked partial gene gene1088 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1086a YPO1087 YPO1087 YPO1087 1234752 1235063 + putative prophage protein Similar to plasmid proteins. Similar to Xylella fastidiosa hypothetical protein XFA0045 TR:Q9PHG3 (EMBL:AE003851) (106 aa) fasta scores: E(): 3e-14%2C 54.2%25 id in 72 aa%2C and to Pseudomonas alcaligenes hypothetical 11.2 kDa protein TR:Q9XAX7 (EMBL:U88088) (99 aa) fasta scores: E(): 4e-06%2C 50.0%25 id in 54 aa gene gene1089 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1087 YPO1088 YPO1088 YPO1088 1235071 1235391 + putative DNA-binding prophage protein Similar to Xylella fastidiosa hypothetical protein XFA0046 TR:Q9PHG2 (EMBL:AE003851) (108 aa) fasta scores: E(): 4.3e-10%2C 40.0%25 id in 95 aa%2C and to Pseudomonas alcaligenes hypothetical 10.3 kDa protein TR:Q9XAX6 (EMBL:U88088) (96 aa) fasta scores: E(): 2e-05%2C 36.6%25 id in 82 aa gene gene1090 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1088 YPO1089 YPO1089 YPO1089 1235740 1236828 - putative regulatory prophage protein Weakly similar to many from plasmids and bacteriophage. Similar to unidentified replication protein A repA TR:Q03086 (EMBL:M73777) (290 aa) fasta scores: E(): 6.1e-07%2C 30.7%25 id in 238 aa%2C and to uncultured eubacterium plasmid putative DNA helicase repA TR:Q9L3P0 (EMBL:AJ271879) (279 aa) fasta scores: E(): 0.00012%2C 25.7%25 id in 237 aa%2C and to Escherichia coli regulatory protein RepA repA SW:REPJ_ECOLI (P20356) (279 aa) fasta scores: E(): 0.00022%2C 27.6%25 id in 192 aa%2C and to uncultured eubacterium plasmid pIE1115 putative DNA helicase repA TR:CAC05682 (EMBL:AJ293027) (279 aa) fasta scores: E(): 0.00036%2C 26.7%25 id in 191 aa%2C and to lactococcal bacteriophage bIL170 complete genome e5 TR:O80155 (EMBL:AF009630) (316 aa) fasta scores: E(): 0.51%2C 22.2%25 id in 203 aa gene gene1091 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1089 YPO1090 YPO1090 YPO1090 1236825 1237784 - putative prophage DNA primase Similar to the N-terminal regions of bacteriophage P4 putative P4-specific DNA primase alpha SW:PRIM_BPP4 (P10277) (777 aa) fasta scores: E(): 0%2C 35.8%25 id in 324 aa%2Cand Escherichia coli DNA primase TraC SW:TRC5_ECOLI (P27190) (1448 aa) fasta scores: E(): 1.5e-10%2C 27.8%25 id in 270 aa. Possible truncated protein. gene gene1092 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1090 YPO1091 YPO1091 YPO1091 1237777 1238319 - putative prophage protein Similar to Shigella flexneri insertion sequence IS2 DNA TR:Q54157 (EMBL:Z23101) (179 aa) fasta scores: E(): 0.0091%2C 28.8%25 id in 132 aa%2C and to Bacteriophage P4 ASH protein cI SW:VASH_BPP4 (P05462) (137 aa) fasta scores: E(): 0.25%2C 37.5%25 id in 72 aa gene gene1093 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1091 YPO1092 YPO1092 YPO1092 1238512 1239408 - putative DNA-binding prophage protein Similar to Pseudomonas aeruginosa integrase/recombinase XerD TR:AAG07125 (EMBL:AE004793) (298 aa) fasta scores: E(): 0.027%2C 28.0%25 id in 239 aa%2C and to Chlamydia pneumoniae integrase/recombinase XerC or CP0752 TR:Q9Z9F7 (EMBL:AE001587) (312 aa) fasta scores: E(): 0.16%2C23.3%25 id in 232 aa gene gene1094 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1092 YPO1092a YPO1092a YPO1092a 1239421 1239711 - hypothetical protein No significant database matches gene gene1095 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1092a YPO1094 YPO1094 YPO1094 1239803 1239976 - hypothetical protein No significant database matches gene gene1096 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1094 YPO1095 YPO1095 YPO1095 1240207 1240434 + hypothetical protein No significant database matches gene gene1097 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1095 YPO1096 YPO1096 YPO1096 1240596 1242266 - putative phage protein No significant database matches gene gene1098 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1096 YPO1097 YPO1097 YPO1097 1242317 1243405 - putative phage protein No significant database matches gene gene1099 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1097 YPO1098 YPO1098 YPO1098 1243484 1244683 - putative prophage integrase Similar to Escherichia coli prophage CP4-57 integrase SW:INTA_ECOLI (P32053) (413 aa) fasta scores: E(): 0%2C 57.8%25 id in 389 aa%2C and to Vibrio cholerae phage integrase VC0516 TR:Q9KUK2 (EMBL:AE004138) (413 aa) fasta scores: E(): 0%2C 52.7%25 id in 393 aa gene gene1100 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1098 YPO1099 YPO1099 tnp tnp 1244907 1245365 - transposase for the IS1541 insertion element Similar to Salmonella typhimurium and Salmonella typhi transposase for insertion sequence IS200%2C TnpA%2CSW:TNPA_SALTY (Q57334) (152 aa) fasta scores: E(): 0%2C 93.4%25 id in 152 aa. Almost identical to the Yersinia pseudotuberculosis IS1541 element transposase Tnp TR:Q9X9F5 (EMBL:AJ238014) (152 aa) fasta scores: E(): 0%2C 99.3%25 id in 152 aa gene gene1101 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1099 YPO1101 YPO1101 b2620 b2620 1246000 1246482 - SsrA-binding protein (small protein B) Similar to Escherichia coli SsrA-binding protein SmpB SW:SMPB_ECOLI (P32052) (159 aa) fasta scores: E(): 0%2C84.9%25 id in 159 aa%2C and to Vibrio cholerae SsrA-binding protein small protein B TR:Q9KTQ3 (EMBL:AE004170) (161 aa) fasta scores: E(): 0%2C 67.7%25 id in 161 aa gene gene1103 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1101 YPO1102 YPO1102 YPO1102 1246643 1247077 + conserved hypothetical protein Similar to Escherichia coli hypothetical protein YfjG SW:YFJG_ECOLI (P52121) (158 aa) fasta scores: E(): 0%2C79.3%25 id in 145 aa%2C and to Vibrio cholerae hypothetical protein VC0849 SW:Y849_VIBCH (P52122) (144 aa) fasta scores: E(): 0%2C 69.0%25 id in 142 aa gene gene1104 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1102 YPO1103 YPO1103 YPO1103 1247070 1247354 + conserved hypothetical protein Similar to Escherichia coli hypothetical protein YfjF SW:YFJF_ECOLI (P52119) (96 aa) fasta scores: E(): 5.8e-24%2C 76.4%25 id in 89 aa%2C and to Vibrio cholerae hypothetical protein YfjF SW:YFJF_VIBCH (P52120) (101 aa) fasta scores: E(): 2.4e-17%2C 60.9%25 id in 92 aa gene gene1105 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1103 YPO1104 YPO1104 YPO1104 1247504 1247854 - conserved hypothetical protein Similar to Escherichia coli small protein A precursor SmpA SW:SMPA_ECOLI (P23089) (113 aa) fasta scores: E(): 0%2C 78.8%25 id in 113 aa%2C and to Vibrio cholerae small protein A homolog precursor SmpA TR:Q9KTQ0 (EMBL:AE004170) (136 aa) fasta scores: E(): 3.1e-12%2C 36.8%25 id in 114 aa gene gene1106 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1104 YPO1105 YPO1105 YPO1105 1247959 1249638 - DNA repair protein RecN Similar to Escherichia coli DNA repair protein RecN SW:RECN_ECOLI (P05824) (553 aa) fasta scores: E(): 0%2C 74.3%25 id in 553 aa%2C and to Vibrio cholerae DNA repair protein RecN SW:RECN_VIBCH (P52118) (554 aa) fasta scores: E(): 0%2C53.7%25 id in 553 aa gene gene1107 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1105 YPO1106 YPO1106 YPO1106 1249707 1250588 - conserved hypothetical protein Similar to Escherichia coli hypothetical protein YfjB SW:YFJB_ECOLI (P37768) (292 aa) fasta scores: E(): 0%2C82.9%25 id in 293 aa%2C and to Vibrio cholerae hypothetical protein VC0853 TR:Q9KTP8 (EMBL:AE004170) (294 aa) fasta scores: E(): 0%2C 59.3%25 id in 290 aa gene gene1108 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1106 YPO1107 YPO1107 YPO1107 1250712 1251290 + heat shock protein GrpE Similar to Escherichia coli GrpE protein SW:GRPE_ECOLI (P09372) (197 aa) fasta scores: E(): 0%2C 59.2%25 id in 179 aa%2C and to Vibrio cholerae GrpE protein TR:Q9KTP7 (EMBL:AE004170) (200 aa) fasta scores: E(): 2.1e-28%2C 53.9%25 id in 167 aa gene gene1109 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1107 YPO1108 YPO1108 gltA gltA 1251398 1252678 - citrate synthase GltA Similar to Escherichia coli citrate synthase GltA SW:CISY_ECOLI (P00891) (427 aa) fasta scores: E(): 0%2C 86.7%25 id in 427 aa%2C and to Vibrio cholerae citrate synthase VC2092 TR:Q9KQA8 (EMBL:AE004283) (431 aa) fasta scores: E(): 0%2C 78.0%25 id in 422 aa gene gene1110 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1108 YPO1109 YPO1109 cybA cybA 1253388 1253777 + succinate dehydrogenase cytochrome b-556 subunit Similar to Escherichia coli succinate dehydrogenase cytochrome b556 subunit SdhC SW:DHSC_ECOLI (P10446) (129 aa) fasta scores: E(): 0%2C 77.2%25 id in 127 aa%2C and to Vibrio cholerae succinate dehydrogenase%2C cytochrome b556 subunit VC2091 TR:Q9KQA9 (EMBL:AE004283) (130 aa) fasta scores: E(): 0%2C 75.0%25 id in 124 aa gene gene1111 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1109 YPO1110 YPO1110 sdhD sdhD 1253771 1254118 + succinate dehydrogenase hydrophobic membrane anchor protein Similar to Escherichia coli succinate dehydrogenase hydrophobic membrane anchor protein SdhD SW:DHSD_ECOLI (P10445) (115 aa) fasta scores: E(): 1.9e-32%2C 69.3%25 id in 114 aa%2C and to Vibrio cholerae succinate dehydrogenase%2Chydrophobic membrane anchor protein VC2090 TR:Q9KQB0 (EMBL:AE004283) (114 aa) fasta scores: E(): 1.1e-23%2C 57.4%25 id in 115 aa gene gene1112 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1110 YPO1111 YPO1111 sdhA sdhA 1254119 1255885 + succinate dehydrogenase flavoprotein subunit Similar to Escherichia coli succinate dehydrogenase flavoprotein subunit SdhA SW:DHSA_ECOLI (P10444) (588 aa) fasta scores: E(): 0%2C 92.0%25 id in 588 aa%2C and to Vibrio cholerae succinate dehydrogenase%2C flavoprotein subunit VC2089 TR:Q9KQB1 (EMBL:AE004283) (588 aa) fasta scores: E(): 0%2C 82.3%25 id in 588 aa gene gene1113 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1111 YPO1112 YPO1112 sdhB sdhB 1255935 1256651 + succinate dehydrogenase iron-sulfur protein Similar to Escherichia coli succinate dehydrogenase iron-sulfur protein SdhB SW:DHSB_ECOLI (P07014) (238 aa) fasta scores: E(): 0%2C 90.8%25 id in 238 aa%2C and to Vibrio cholerae succinate dehydrogenase%2C iron-sulfur protein VC2088 TR:Q9KQB2 (EMBL:AE004283) (236 aa) fasta scores: E(): 0%2C 80.2%25 id in 237 aa gene gene1114 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1112 YPO1113 YPO1113 sucA sucA 1257007 1259814 + 2-oxoglutarate dehydrogenase E1 component Similar to Escherichia coli 2-oxoglutarate dehydrogenase E1 component SucA SW:ODO1_ECOLI (P07015) (933 aa) fasta scores: E(): 0%2C 87.8%25 id in 935 aa%2C and to Vibrio cholerae 2-oxoglutarate dehydrogenase%2C E1 component VC2087 TR:Q9KQB3 (EMBL:AE004282) (936 aa) fasta scores: E(): 0%2C73.8%25 id in 936 aa gene gene1115 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1113 YPO1114 YPO1114 sucB sucB 1259844 1261067 + dihydrolipoamide succinyltransferase component of 2-oxoglutarate dehydrogenase complex Similar to Escherichia coli dihydrolipoamide succinyltransferase component of 2-oxoglutarate dehydrogenase complex SucB SW:ODO2_ECOLI (P07016) (404 aa) fasta scores: E(): 0%2C 84.2%25 id in 406 aa%2C and to Vibrio cholerae 2-oxoglutarate dehydrogenase%2C E2 component%2Cdihydrolipoamide succinyltransferase VC2086 TR:Q9KQB4 (EMBL:AE004282) (404 aa) fasta scores: E(): 0%2C 75.1%25 id in 405 aa gene gene1116 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1114 YPO1115 YPO1115 b0728 b0728 1261180 1262346 + succinyl-CoA synthetase beta chain Similar to Escherichia coli succinyl-CoA synthetase beta chain SW:SUCC_ECOLI (P07460) (388 aa) fasta scores: E(): 0%2C 92.8%25 id in 388 aa%2C and to Vibrio cholerae succinyl-CoA synthase%2C beta subunit VC2085 TR:Q9KQB5 (EMBL:AE004282) (388 aa) fasta scores: E(): 0%2C 77.1%25 id in 388 aa gene gene1117 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1115 YPO1116 YPO1116 sucD sucD 1262346 1263218 + succinyl-CoA synthetase alpha chain Similar to Escherichia coli succinyl-CoA synthetase alpha chain SW:SUCD_ECOLI (P07459) (288 aa) fasta scores: E(): 0%2C 90.9%25 id in 287 aa%2C and to Vibrio cholerae succinyl-CoA synthase%2C alpha subunit VC2084 TR:Q9KQB6 (EMBL:AE004282) (290 aa) fasta scores: E(): 0%2C 85.4%25 id in 287 aa gene gene1118 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1116 YPO1117 YPO1117 cydA cydA 1263985 1265553 + cytochrome D ubiquinol oxidase subunit I Similar to Escherichia coli cytochrome D ubiquinol oxidase subunit I SW:CYDA_ECOLI (P11026) (522 aa) fasta scores: E(): 0%2C 86.6%25 id in 522 aa gene gene1119 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1117 YPO1118 YPO1118 cydB cydB 1265568 1266707 + cytochrome D ubiquinol oxidase subunit II Similar to Escherichia coli cytochrome D ubiquinol oxidase subunit II SW:CYDB_ECOLI (P11027) (379 aa) fasta scores: E(): 0%2C 78.4%25 id in 379 aa gene gene1120 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1118 YPO1119 YPO1119 YPO1119 1266799 1267131 + conserved hypothetical protein Similar to Escherichia coli protein YbgE SW:YBGE_ECOLI (P37343) (97 aa) fasta scores: E(): 6e-22%2C59.6%25 id in 89 aa%2C and to Vibrio cholerae hypothetical protein VC1841 TR:Q9KR06 (EMBL:AE004260) (105 aa) fasta scores: E(): 4.3e-08%2C 34.5%25 id in 84 aa gene gene1121 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1119 YPO1120 YPO1120 YPO1120 1267263 1267664 + conserved hypothetical protein Similar to Escherichia coli hypothetical protein YbgC SW:YBGC_ECOLI (P08999) (134 aa) fasta scores: E(): 0%2C72.2%25 id in 133 aa gene gene1122 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1120 YPO1121 YPO1121 tolQ tolQ 1267664 1268350 + TolQ colicin import protein Similar to Escherichia coli TolQ protein SW:TOLQ_ECOLI (P05828) (230 aa) fasta scores: E(): 0%2C 89.4%25 id in 227 aa gene gene1123 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1121 YPO1122 YPO1122 tolR tolR 1268363 1268791 + TolR colicin import membrane protein Similar to Escherichia coli TolR protein protein SW:TOLR_ECOLI (P05829) (142 aa) fasta scores: E(): 0%2C 83.1%25 id in 142 aa%2C and to Vibrio cholerae TolR membrane protein vc1838 TR:Q9KR09 (EMBL:AE004259) (146 aa) fasta scores: E(): 5.5e-15%2C 39.4%25 id in 137 aa gene gene1124 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1122 YPO1123 YPO1123 tolA tolA 1268903 1270069 + TolA colicin import membrane protein Similar to Escherichia coli TolA protein SW:TOLA_ECOLI (P19934) (421 aa) fasta scores: E(): 5.1e-27%2C57.9%25 id in 423 aa%2C and to Pseudomonas aeruginosa TolA protein SW:TOLA_PSEAE (P50600) (347 aa) fasta scores: E(): 6.6e-09%2C 33.2%25 id in 319 aa gene gene1125 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1123 YPO1124 YPO1124 tolB tolB 1270189 1271481 + TolB colicin import protein Similar to Escherichia coli TolB protein precursor SW:TOLB_ECOLI (P19935) (430 aa) fasta scores: E(): 0%2C 84.9%25 id in 430 aa gene gene1126 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1124 YPO1125 YPO1125 excC excC 1271532 1272038 + peptidoglycan-associated lipoprotein Pal Similar to Escherichia coli peptidoglycan-associated lipoprotein precursor Pal or ExcC SW:PAL_ECOLI (P07176) (173 aa) fasta scores: E(): 0%2C 84.4%25 id in 173 aa%2C and to Vibrio cholerae peptidoglycan-associated lipoprotein vc1835 TR:Q9KR12 (EMBL:AE004259) (172 aa) fasta scores: E(): 0%2C59.9%25 id in 172 aa gene gene1127 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1125 YPO1126 YPO1126 YPO1126 1272048 1272857 + putative exported protein Similar to Escherichia coli hypothetical 28.2 kDa protein in pal-lysT intergenic region precursor YbgF SW:YBGF_ECOLI (P45955) (263 aa) fasta scores: E(): 0%2C 70.0%25 id in 270 aa%2C and to Pseudomonas aeruginosa periplasmic protein TR:Q9RNV2 (EMBL:AF177774) (274 aa) fasta scores: E(): 6.6e-17%2C 34.2%25 id in 225 aa gene gene1128 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1126 YPO1127 YPO1127 nadA nadA 1273693 1274754 + quinolinate synthetase A Similar to Escherichia coli quinolinate synthetase A NadA or NicA SW:NADA_ECOLI (P11458) (347 aa) fasta scores: E(): 0%2C 82.1%25 id in 346 aa gene gene1129 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1127 YPO1128 YPO1128 pnuC pnuC 1274876 1275601 + intergral membrane NMN transport protein PnuC Similar to Escherichia coli PnuC protein SW:PNUC_ECOLI (P31215) (239 aa) fasta scores: E(): 0%2C 76.1%25 id in 238 aa gene gene1130 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1128 YPO1129 YPO1129 YPO1129 1275716 1276654 - putative cation transport protein Similar to Escherichia coli hypothetical 34.7 kDa protein in pnuC-aroG intergenic region YbgR SW:YBGR_ECOLI (P75757) (313 aa) fasta scores: E(): 0%2C 66.1%25 id in 307 aa%2Cand to Bacillus subtilis cation transport protein TR:O07084 (EMBL:U93876) (311 aa) fasta scores: E(): 0%2C 41.4%25 id in 309 aa gene gene1131 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1129 YPO1130 YPO1130 aroG aroG 1280022 1280114 + phospho-2-dehydro-3-deoxyheptonate aldolase%2Cphe-sensitive%2C AroG (pseudogene) Similar to Escherichia coli phospho-2-dehydro-3-deoxyheptonate aldolase%2C Phe-sensitive AroG SW:AROG_ECOLI (P00886) (350 aa) fasta scores: E(): 0%2C86.6%25 id in 320 aa. The IS insertion occurred near the C-terminal end (following codon 320). This CDS is disrupted by the insertion of IS100. The insertion occurred near the C-terminus. It is not clear whether this insertion affects the function of the protein. pseudogene gene1132 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1130 YPO1131 YPO1131 ypmt1.57c ypmt1.57c 1278129 1278911 - insertion sequence IS100%2C ATP-binding protein Similar to Escherichia coli insertion sequence IS21 putative ATP-binding protein%2C IstB SW:ISTB_ECOLI (P15026) (265 aa) fasta scores: E(): 0%2C 47.4%25 id in 249 aa. Also almost identical to Yersinia pestis and Escherichia coli putative IS100 transposase ypmt1.57c TR:Q9R3L5 (EMBL:AL117211) (260 aa) fasta scores: E(): 0%2C 99.6%25 id in 260 aa. gene gene1133 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1131 YPO1132 YPO1132 y1093 y1093 1278908 1279930 - transposase for insertion sequence IS100 Similar to Escherichia coli transposase for insertion sequence element IS21 IstA SW:ISTA_ECOLI (P15025) (390 aa) fasta scores: E(): 3e-27%2C 33.1%25 id in 329 aa. Identical to the previously sequenced Yersinia pestis%2CYersinia pseudotuberculosis%2C and Escherichia coli pesticin plasmid insertion sequence transposase Y1055 TR:P74993 (EMBL:U59875) (340 aa) fasta scores: E(): 0%2C 100.0%25 id in 340 aa gene gene1134 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1132 YPO1133 YPO1133 gpm gpm 1280296 1281048 - phosphoglycerate mutase 1 Similar to Escherichia coli phosphoglycerate mutase 1 SW:PMG1_ECOLI (P31217) (249 aa) fasta scores: E(): 0%2C88.0%25 id in 249 aa gene gene1135 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1133 YPO1134 YPO1134 psiF psiF 1281395 1281730 - putative starvation-inducible protein Similar to Escherichia coli phosphate starvation-inducible protein PsiF precursor psiF SW:PSIF_ECOLI (P27295) (106 aa) fasta scores: E(): 1.2e-15%2C54.5%25 id in 112 aa gene gene1136 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1134 YPO1135 YPO1135 galM galM 1282023 1283092 - aldose 1-epimerase (pseudogene) Similar to Escherichia coli aldose 1-epimerase galM SW:GALM_ECOLI (P40681) (346 aa) fasta scores: E(): 0%2C 60.2%25 id in 344 aa. There is a frameshift following codon 39. The frameshift occurs within a homopolymeric tract of 6G. The sequence has been checked and is believed to be correct pseudogene gene1137 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1135 YPO1137 YPO1137 galA galA 1283086 1284237 - galactokinase Similar to Escherichia coli galactokinase SW:GAL1_ECOLI (P06976) (381 aa) fasta scores: E(): 0%2C 72.5%25 id in 382 aa gene gene1138 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1137 YPO1138 YPO1138 galB galB 1284234 1285286 - galactose-1-phosphate uridylyltransferase Similar to Escherichia coli galactose-1-phosphate uridylyltransferase GalT or GalB SW:GAL7_ECOLI (P09148) (348 aa) fasta scores: E(): 0%2C 82.4%25 id in 347 aa gene gene1139 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1138 YPO1139 YPO1139 galD galD 1285296 1286312 - UDP-glucose 4-epimerase Similar to Escherichia coli UDP-glucose 4-epimerase GalE or GalD SW:GALE_ECOLI (P09147) (338 aa) fasta scores: E(): 0%2C 76.0%25 id in 338 aa. Previously sequenced in Yersinia pestis as TR:AAG22000 (EMBL:AF282311) (338 aa) fasta scores: E(): 0%2C 100.0%25 id in 338 aa gene gene1140 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1139 YPO1140 YPO1140 YPO1140 1286672 1287490 - putative membrane protein Similar to Vibrio cholerae hypothetical protein VC1074 TR:Q9KT31 (EMBL:AE004189) (276 aa) fasta scores: E(): 0%2C 45.5%25 id in 275 aa gene gene1141 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1140 YPO1142 YPO1142 modF modF 1287707 1289197 - putative molybdenum transport ATP-binding protein modF Similar to Escherichia coli putative molybdenum transport ATP-binding protein ModF or PhrA SW:MODF_ECOLI (P31060) (490 aa) fasta scores: E(): 0%2C 75.0%25 id in 484 aa gene gene1142 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1142 YPO1143 YPO1143 modE modE 1289307 1290098 - molybdenum transport protein ModE Similar to Escherichia coli molybdenum transport protein SW:MODE_ECOLI (P46930) (262 aa) fasta scores: E(): 0%2C 70.5%25 id in 264 aa gene gene1143 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1143 YPO1144 YPO1144 YPO1144 1290415 1290567 + putative membrane protein Similar to Escherichia coli hypothetical 5.3 kDa protein in modE-modA intergenic region precursor YbhT SW:YBHT_ECOLI (P75759) (49 aa) fasta scores: E(): 8.4e-11%2C82.5%25 id in 40 aa. Also contains region similar to many eukaryotic ATPase subunits eg. Mesembryanthemum crystallinum vacuolar H+ ATPase subunit C TR:Q9S953 (EMBL:UNKNOWN ACCESSION) (76 aa) fasta scores: E(): 3.9%2C54.5%25 id in 33 aa gene gene1144 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1144 YPO1145 YPO1145 modA modA 1290802 1291581 + molybdate-binding periplasmic protein precursor Similar to Escherichia coli molybdate-binding periplasmic protein precursor ModA SW:MODA_ECOLI (P37329) (257 aa) fasta scores: E(): 0%2C 71.1%25 id in 246 aa gene gene1145 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1145 YPO1146 YPO1146 chlJ chlJ 1291581 1292276 + molybdenum transport system permease protein ModB Similar to Escherichia coli molybdenum transport system permease protein Modb or ChlJ SW:MODB_ECOLI (P09834) (229 aa) fasta scores: E(): 0%2C 76.3%25 id in 228 aa gene gene1146 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1146 YPO1147 YPO1147 chlD chlD 1292270 1293349 + molybdenum transport ATP-binding protein ModC Similar to Escherichia coli molybdenum transport ATP-binding protein ModC or ChlD or NarD SW:MODC_ECOLI (P09833) (352 aa) fasta scores: E(): 0%2C 69.1%25 id in 349 aa gene gene1147 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1147 YPO1148 YPO1148 YPO1148 1293405 1294226 - conserved hypothetical protein Similar to Escherichia coli hypothetical protein YbhA SW:YBHA_ECOLI (P21829) (272 aa) fasta scores: E(): 0%2C64.0%25 id in 272 aa%2C and to Vibrio cholerae hypothetical protein VCA0243 TR:Q9KMS7 (EMBL:AE004364) (273 aa) fasta scores: E(): 0%2C 39.2%25 id in 273 aa gene gene1148 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1148 YPO1149 YPO1149 YPO1149 1294517 1295521 + conserved hypothetical protein Similar to Escherichia coli hypothetical protein YbhE SW:YBHE_ECOLI (P52697) (331 aa) fasta scores: E(): 0%2C56.8%25 id in 329 aa%2C and to Buchnera aphidicola (subsp. Acyrthosiphon pisum) hypothetical protein BU293 SW:Y293_BUCAI (P57380) (334 aa) fasta scores: E(): 0%2C 35.8%25 id in 330 aa gene gene1149 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1149 YPO1150 YPO1150 bioA bioA 1295706 1296974 - adenosylmethionine-8-amino-7-oxononanoate aminotransferase Similar to many eg. Escherichia coli adenosylmethionine-8-amino-7-oxononanoate aminotransferase BioA SW:BIOA_ECOLI (P12995) (429 aa) fasta scores: E(): 0%2C74.6%25 id in 417 aa gene gene1150 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1150 YPO1151 YPO1151 bioB bioB 1297073 1298110 + biotin synthase Similar to many eg. Escherichia coli biotin synthase BioB SW:BIOB_ECOLI (P12996) (346 aa) fasta scores: E(): 0%2C84.6%25 id in 344 aa gene gene1151 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1151 YPO1152 YPO1152 bioF bioF 1298110 1299261 + 8-amino-7-oxononanoate synthase Similar to many eg. Escherichia coli 8-amino-7-oxononanoate synthase BioF SW:BIOF_ECOLI (P12998) (384 aa) fasta scores: E(): 0%2C 65.8%25 id in 383 aa gene gene1152 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1152 YPO1153 YPO1153 bioC bioC 1299245 1300048 + biotin synthesis protein BioC Similar to many eg. Escherichia coli biotin synthesis protein BioC SW:BIOC_ECOLI (P12999) (251 aa) fasta scores: E(): 0%2C 49.6%25 id in 250 aa gene gene1153 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1153 YPO1154 YPO1154 bioD bioD 1300041 1300763 + dethiobiotin synthetase Similar to many eg. Escherichia coli dethiobiotin synthetase BioD SW:BIOD_ECOLI (P13000) (224 aa) fasta scores: E(): 0%2C 71.2%25 id in 229 aa gene gene1154 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1154 YPO1155 YPO1155 YPO1155 1300915 1301625 - putative amino acid transporter Similar to Synechocystis sp high-affinity branched-chain amino acid transport ATP-binding protein TR:Q55753 (EMBL:D64002) (249 aa) fasta scores: E(): 5.8e-31%2C 43.3%25 id in 238 aa%2C and to Escherichia coli high-affinity branched-chain amino acid transport ATP-binding protein LivF SW:LIVF_ECOLI (P22731) (237 aa) fasta scores: E(): 5.1e-22%2C 36.3%25 id in 237 aa gene gene1155 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1155 YPO1156 YPO1156 uvrB uvrB 1302715 1304730 + excinuclease ABC subunit B Similar to many eg. Escherichia coli excinuclease ABC subunit B UvrB SW:UVRB_ECOLI (P07025) (673 aa) fasta scores: E(): 0%2C 85.9%25 id in 673 aa gene gene1156 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1156 YPO1157 YPO1157 YPO1157 1305022 1305267 + conserved hypothetical protein Similar to Vibrio cholerae hypothetical protein VC1816 TR:Q9KR31 (EMBL:AE004257) (71 aa) fasta scores: E(): 6.9e-17%2C 64.7%25 id in 68 aa%2C and to Vibrio marinus genes%2Ccomplete cds%2C similar to eicosapentaenoic acid synthesis gene cluster TR:Q9RA23 (EMBL:AB025342) (72 aa) fasta scores: E(): 1.2e-16%2C 68.3%25 id in 63 aa gene gene1157 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1157 YPO1158 YPO1158 YPO1158 1305398 1306321 - conserved hypothetical protein Similar to Escherichia coli hypothetical protein YbhK SW:YBHK_ECOLI (P75767) (302 aa) fasta scores: E(): 0%2C77.7%25 id in 301 aa%2C and to Vibrio cholerae hypothetical protein VC1023 TR:Q9KT82 (EMBL:AE004184) (296 aa) fasta scores: E(): 0%2C 53.9%25 id in 297 aa gene gene1158 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1158 YPO1159 YPO1159 bisA bisA 1306853 1307833 + molybdenum cofactor biosynthesis protein A Similar to Escherichia coli molybdenum cofactor biosynthesis protein A MoaA SW:MOAA_ECOLI (P30745) (329 aa) fasta scores: E(): 0%2C 78.2%25 id in 326 aa%2C and to Vibrio cholerae molybdenum cofactor biosynthesis protein A VC1024 TR:Q9KT81 (EMBL:AE004184) (334 aa) fasta scores: E(): 0%2C65.0%25 id in 329 aa gene gene1159 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1159 YPO1160 YPO1160 chlA3 chlA3 1307934 1308413 + molybdenum cofactor biosynthesis protein C Similar to Escherichia coli molybdenum cofactor biosynthesis protein C MoaC SW:MOAC_ECOLI (P30747) (160 aa) fasta scores: E(): 0%2C 87.9%25 id in 157 aa%2C and to Vibrio cholerae molybdenum cofactor biosynthesis protein C VC1026 TR:Q9KT79 (EMBL:AE004184) (160 aa) fasta scores: E(): 0%2C78.5%25 id in 158 aa gene gene1160 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1160 YPO1161 YPO1161 chlA4 chlA4 1308410 1308655 + molybdopterin [mpt] converting factor%2C subunit 1 Similar to Escherichia coli molybdopterin [mpt] converting factor%2C subunit 1 MoaD SW:MOAD_ECOLI (P30748) (81 aa) fasta scores: E(): 2.9e-23%2C 71.6%25 id in 81 aa%2C and to Vibrio cholerae molybdenum cofactor biosynthesis protein D vc1027 TR:Q9KT78 (EMBL:AE004184) (81 aa) fasta scores: E(): 2.4e-17%2C 63.0%25 id in 81 aa gene gene1161 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1161 YPO1162 YPO1162 chlA5 chlA5 1308655 1309110 + molybdopterin [mpt] converting factor%2C subunit 2 Similar to Escherichia coli molybdopterin [mpt] converting factor%2C subunit 2 MoaE SW:MOAE_ECOLI (P30749) (149 aa) fasta scores: E(): 0%2C 81.7%25 id in 120 aa%2C and to Vibrio cholerae molybdenum cofactor biosynthesis protein E VC1028 TR:Q9KT77 (EMBL:AE004184) (150 aa) fasta scores: E(): 0%2C 68.3%25 id in 120 aa gene gene1162 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1162 YPO1163 YPO1163 YPO1163 1309253 1309963 + putative membrane protein Similar to Escherichia coli hypothetical 25.9 kDa protein in moaE-rhlE intergenic region SW:YBHL_ECOLI (P75768) (234 aa) fasta scores: E(): 0%2C 73.3%25 id in 236 aa%2Cand to Borrelia burgdorferi conserved hypothetical integral membrane protein BB0539 TR:O51489 (EMBL:AE001155) (232 aa) fasta scores: E(): 0%2C 49.3%25 id in 215 aa gene gene1163 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1163 YPO1164 YPO1164 tnp tnp 1310198 1310656 + transposase for the IS1541 insertion element Similar to Salmonella typhimurium%2C and Salmonella typhi transposase for insertion sequence IS200 TnpA SW:T200_SALTY (Q57334) (152 aa) fasta scores: E(): 0%2C 94.1%25 id in 152 aa. Identical to the Yersinia pseudotuberculosis IS1541 element transposase Tnp TR:Q9X9F5 (EMBL:AJ238014) (152 aa) fasta scores: E(): 0%2C 100.0%25 id in 152 aa gene gene1164 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1164 YPO1165 YPO1165 betA betA 1310885 1312588 - choline dehydrogenase Similar to many eg. Escherichia coli choline dehydrogenase BetA SW:BETA_ECOLI (P17444) (556 aa) fasta scores: E(): 0%2C 79.4%25 id in 553 aa%2C and to Homo sapiens choline dehydrogenase ChdH TR:Q9NY17 (EMBL:AJ272267) (482 aa) fasta scores: E(): 0%2C 50.1%25 id in 467 aa gene gene1165 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1165 YPO1166 YPO1166 betB betB 1312611 1314083 - betaine aldehyde dehydrogenase Similar to Escherichia coli betaine aldehyde dehydrogenase BetB SW:DHAB_ECOLI (P17445) (489 aa) fasta scores: E(): 0%2C 76.7%25 id in 489 aa%2C and to Homo sapiens aldehyde dehydrogenase%2C E3 isozyme AldH9 or AldH7 or AldH9A1 SW:DHAG_HUMAN (P49189) (493 aa) fasta scores: E(): 0%2C 51.3%25 id in 483 aa gene gene1166 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1166 YPO1167 YPO1167 betI betI 1314141 1314737 - TetR-family regulatory protein Similar to Escherichia coli regulatory protein of the osmoregulatory choline-glycine betaine pathway BetI SW:BETI_ECOLI (P17446) (195 aa) fasta scores: E(): 0%2C 64.1%25 id in 192 aa gene gene1167 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1167 YPO1168 YPO1168 betT betT 1315102 1317123 + high-affinity choline transport protein Similar to Escherichia coli high-affinity choline transport protein BetT SW:BETT_ECOLI (P17447) (677 aa) fasta scores: E(): 0%2C 77.6%25 id in 678 aa%2C and to Erwinia amylovora high-affinity choline transport protein BetT TR:AAG31040 (EMBL:AF264948) (676 aa) fasta scores: E(): 0%2C80.0%25 id in 681 aa gene gene1168 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1168 YPO1169 YPO1169 YPO1169 1317355 1318248 + putative LysR-family regulatory protein Similar to many eg. Escherichia coli xanthosine operon regulatory protein WapR SW:XAPR_ECOLI (P23841) (294 aa) fasta scores: E(): 0%2C 38.3%25 id in 287 aa gene gene1169 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1169 YPO1170 YPO1170 YPO1170 1318286 1319167 - putative membrane protein Weakly similar to Bacillus subtilis hypothetical 35.8 kDa protein in lplD-pel intergenic region SW:YETK_BACSU (O31540) (330 aa) fasta scores: E(): 8e-12%2C22.5%25 id in 298 aa%2C and to Erwinia chrysanthemi PecM protein pecM SW:PECM_ERWCH (P42194) (297 aa) fasta scores: E(): 0.00048%2C 20.9%25 id in 277 aa gene gene1170 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1170 YPO1171 YPO1171 pndA pndA 1319480 1320343 + xanthosine phosphorylase Similar to Escherichia coli xanthosine phosphorylase XapA or PndA SW:XAPA_ECOLI (P45563) (277 aa) fasta scores: E(): 0%2C 70.2%25 id in 272 aa%2C and to Mus musculus purine nucleoside phosphorylase SW:PNPH_MOUSE (P23492) (289 aa) fasta scores: E(): 0%2C 42.6%25 id in 265 aa gene gene1171 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1171 YPO1172 YPO1172 xapB' xapB' 1320482 1321126 + xanthosine permease (pseudogene) Gene interrupted by IS1541. Similar to Escherichia coli xanthosine permease XapB SW:XAPB_ECOLI (P45562) (418 aa) fasta scores: E(): 0%2C 62.5%25 id in 216 aa%2C and to Escherichia coli nucleoside permease NupG nupG SW:NUPG_ECOLI (P09452) (418 aa) fasta scores: E(): 0%2C 49.6%25 id in 248 aa pseudogene gene1172 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1172 YPO1173 YPO1173 tnp tnp 1321272 1321730 + transposase for the IS1541 insertion element Similar to Salmonella typhimurium%2C and Salmonella typhi transposase for insertion sequence IS200 TnpA SW:T200_SALTY (Q57334) (152 aa) fasta scores: E(): 0%2C 94.1%25 id in 152 aa. Also identical to the Yersinia pseudotuberculosis IS1541-like elements transposase Tnp TR:Q9X9F5 (EMBL:AJ238014) (152 aa) fasta scores: E(): 0%2C100.0%25 id in 152 aa gene gene1173 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1173 YPO1174 YPO1174 YPO1174 1322145 1323074 + hypothetical protein no significant database hits gene gene1174 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1174 YPO1175 YPO1175 YPO1175 1323368 1324312 + conserved hypothetical protein Similar to many e.g. Escherichia coli hypothetical protein YohI SW:YOHI_ECOLI (P33371) (315 aa) fasta scores: E(): 0%2C 83.3%25 id in 311 aa%2C and to Vibrio cholerae hypothetical protein VC1105 TR:Q9KT00 (EMBL:AE004191) (323 aa) fasta scores: E(): 0%2C 58.9%25 id in 309 aa gene gene1175 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1175 YPO1176 YPO1176 pbpG pbpG 1324904 1325839 + penicillin-binding protein 7 precursor Similar to Escherichia coli penicillin-binding protein 7 precursor PBPG SW:PBP7_ECOLI (P33364) (313 aa) fasta scores: E(): 0%2C 73.5%25 id in 309 aa%2C and to Vibrio cholerae D-alanyl-d-alanine endopeptidase vca0870 TR:Q9KL77 (EMBL:AE004414) (316 aa) fasta scores: E(): 0%2C 61.1%25 id in 314 aa gene gene1176 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1176 YPO1177 YPO1177 dld dld 1325960 1327675 - D-lactate dehydrogenase Similar to Escherichia coli D-lactate dehydrogenase Dld SW:DLD_ECOLI (P06149) (570 aa) fasta scores: E(): 0%2C66.1%25 id in 558 aa%2C and to Neisseria meningitidis D-lactate dehydrogenase NMB0997 TR:Q9JZL7 (EMBL:AE002450) (563 aa) fasta scores: E(): 0%2C 60.9%25 id in 558 aa gene gene1177 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1177 YPO1178 YPO1178 cyaB cyaB 1327882 1328421 + adenylate cyclase 2 Belongs to a family of thermophilic adenylate cyclases. Similar to Aeromonas hydrophila adenylate cyclase 2 CyaB TR:O69199 (EMBL:AJ223730) (190 aa) fasta scores: E(): 8.9e-33%2C 50.9%25 id in 175 aa gene gene1178 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1178 YPO1179 YPO1179 YPO1179 1328447 1328788 - conserved hypothetical protein Similar to Escherichia coli hypothetical protein YajD SW:YAJD_ECOLI (P19678) (109 aa) fasta scores: E(): 0%2C84.7%25 id in 98 aa gene gene1179 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1179 YPO1180 YPO1180 YPO1180 1329101 1330204 + hypothetical protein no significant database hits gene gene1180 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1180 YPO1181 YPO1181 YPO1181 1330314 1330637 + putative membrane protein Similar to Escherichia coli hypothetical 8.7 kDa protein in gapA-rnd intergenic region YeaQ SW:YEAQ_ECOLI (P76246) (82 aa) fasta scores: E(): 1.8e-23%2C 82.9%25 id in 82 aa%2C and to Escherichia coli transglycosylase associated protein SW:TAG1_ECOLI (P76011) (84 aa) fasta scores: E(): 1.7e-16%2C 63.4%25 id in 82 aa gene gene1181 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1181 YPO1182 YPO1182 YPO1182 1330845 1331681 + putative ABC transport ATP-binding subunit Similar to Rhizobium meliloti phosphate transport protein PhoC TR:Q52906 (EMBL:U59229) (270 aa) fasta scores: E(): 0%2C 46.8%25 id in 252 aa%2C and to Escherichia coli phosphonates transport ATP-binding protein PhnC phnC SW:PHNC_ECOLI (P16677) (262 aa) fasta scores: E(): 3.7e-32%2C39.8%25 id in 251 aa gene gene1182 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1182 YPO1183 YPO1183 YPO1183 1331718 1332647 + putative substrate-binding periplasmic transport protein Similar to Rhizobium meliloti phosphate-binding protein PhoD precursor phoD TR:Q52907 (EMBL:U59229) (301 aa) fasta scores: E(): 0%2C 39.8%25 id in 309 aa%2C and to Escherichia coli phosphonates-binding periplasmic protein precursor SW:PHND_ECOLI (P16682) (338 aa) fasta scores: E(): 2.5e-09%2C 30.0%25 id in 263 aa gene gene1183 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1183 YPO1184 YPO1184 YPO1184 1332810 1333610 + putative ABC transport membrane permease Similar to Pseudomonas stutzeri phosphite transporter PtxC TR:O69053 (EMBL:AF061070) (275 aa) fasta scores: E(): 4.5e-30%2C 43.7%25 id in 199 aa%2C and to Rhizobium meliloti phosphate transporter PhoE TR:Q52908 (EMBL:U59229) (320 aa) fasta scores: E(): 2.2e-27%2C 36.9%25 id in 260 aa%2Cand to Escherichia coli phosphonates transport system permease protein SW:PHNE_ECOLI (P16683) (276 aa) fasta scores: E(): 4e-26%2C 40.2%25 id in 189 aa gene gene1184 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1184 YPO1185 YPO1185 YPO1185 1333607 1334494 + putative ABC transport membrane permease Similar to Rhizobium meliloti phosphate transporter PhoT TR:Q52909 (EMBL:U59229) (505 aa) fasta scores: E(): 1.8e-30%2C 40.3%25 id in 243 aa%2C and to Bacillus halodurans alkylphosphonate ABC tranporter PhnE TR:Q9K8M9 (EMBL:AP001517) (266 aa) fasta scores: E(): 2.1e-28%2C 35.3%25 id in 275 aa%2C and to Escherichia coli phosphonates transport system permease protein SW:PHNE_ECOLI (P16683) (276 aa) fasta scores: E(): 4.3e-25%2C 34.3%25 id in 251 aa gene gene1185 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1185 YPO1186 YPO1186 YPO1186 1334740 1335213 + conserved hypothetical protein Similar to Escherichia coli O157:H7 hypothetical protein YehS TR:BAB19553 (EMBL:AP000400) (156 aa) fasta scores: E(): 3.1e-29%2C 50.7%25 id in 150 aa%2C and to Escherichia coli hypothetical protein YehS SW:YEHS_ECOLI (P33355) (156 aa) fasta scores: E(): 3.1e-29%2C 50.7%25 id in 150 aa gene gene1186 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1186 YPO1187 YPO1187 YPO1187 1335648 1336916 + putative substrate-binding periplasmic transport protein Similar to Bacillus halodurans ABC transporter BH0251 TR:Q9KG62 (EMBL:AP001507) (419 aa) fasta scores: E(): 0%2C 52.6%25 id in 378 aa%2C and to Pseudomonas aeruginosa aliphatic amidase expression-regulating protein Amic or PA3364 SW:AMIC_PSEAE (P27017) (384 aa) fasta scores: E(): 2.3e-24%2C 28.6%25 id in 371 aa gene gene1187 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1187 YPO1188 YPO1188 YPO1188 1337040 1338641 + putative Branched-chain amino acid transport system%2C permease component C-terminal region similar to many transport permeases eg. Synechocystis sp high-affinity branched-chain amino acid transport protein LivhH or SLR1200 TR:P73350 (EMBL:D90905) (388 aa) fasta scores: E(): 2.2e-21%2C 41.2%25 id in 381 aa%2C and to Pseudomonas aeruginosa high-affinity branched-chain amino acid transport system permease protein BraD or PA1073 SW:BRAD_PSEAE (P21627) (307 aa) fasta scores: E(): 1.3e-18%2C 28.9%25 id in 298 aa%2C and to Escherichia coli high-affinity branched-chain amino acid transport system permease protein LivH SW:LIVH_ECOLI (P08340) (308 aa) fasta scores: E(): 5e-17%2C 27.1%25 id in 295 aa. N-terminal region has no significant database similarities. gene gene1188 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1188 YPO1189 YPO1189 YPO1189 1338641 1339717 + putative Branched-chain amino acid transport system%2C permease component Similar to many proposed transport permeases eg. Bacillus halodurans ABC transporter bh0249 TR:Q9KG64 (EMBL:AP001507) (367 aa) fasta scores: E(): 0%2C 43.3%25 id in 351 aa%2C and to Deinococcus radiodurans urea/short chain-amide ABC transporter%2C permease protein dra0322 TR:Q9RYJ0 (EMBL:AE001863) (358 aa) fasta scores: E(): 0%2C44.1%25 id in 333 aa gene gene1189 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1189 YPO1190 YPO1190 YPO1190 1339714 1340550 + putative ABC transport ATP-binding subunit Similar to Bacillus halodurans ABC transporter BH0248 TR:Q9KG65 (EMBL:AP001507) (267 aa) fasta scores: E(): 0%2C 49.4%25 id in 255 aa%2C and to Escherichia coli high-affinity branched-chain amino acid transport ATP-binding protein LivG SW:LIVG_ECOLI (P22730) (255 aa) fasta scores: E(): 4.4e-23%2C 36.5%25 id in 252 aa gene gene1190 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1190 YPO1191 YPO1191 YPO1191 1340644 1341342 + putative ABC transport ATP-binding subunit Similar to Bacillus halodurans ABC transporter BH0247 TR:Q9KG66 (EMBL:AP001507) (230 aa) fasta scores: E(): 0%2C 51.2%25 id in 217 aa%2C and to Streptomyces coelicolor putative branched chain amino acid transport ATP-binding protein SC7H2.26 TR:Q9S2J1 (EMBL:AL109732) (238 aa) fasta scores: E(): 1.5e-30%2C 44.4%25 id in 232 aa gene gene1191 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1191 YPO1192 YPO1192 YPO1192 1341457 1342314 + conserved hypothetical protein Weakly similar to others of unknown function Bacillus halodurans BH2933 protein BH2933 TR:Q9K8S0 (EMBL:AP001517) (269 aa) fasta scores: E(): 2e-09%2C 26.8%25 id in 284 aa%2C and to Nostoc sp. GSV224 hypothetical protein TR:Q9RAH0 (EMBL:AF204805) (265 aa) fasta scores: E(): 0.12%2C22.3%25 id in 292 aa gene gene1192 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1192 YPO1193 YPO1193 YPO1193 1342338 1343753 + putative pyridoxal-dependent decarboxylase Similar to many decarboxylases eg. Catharanthus roseus aromatic-L-amino-acid decarboxylase Tdc SW:DCD_CATRO (P17770) (500 aa) fasta scores: E(): 0%2C 38.0%25 id in 481 aa%2Cand to Arabidopsis thaliana putative tyrosine decarboxylase AT2G20340 TR:Q9SK68 (EMBL:AC006569) (479 aa) fasta scores: E(): 0%2C 38.7%25 id in 475 aa%2C and to Sorangium cellulosum aromatic amino acid decarboxylase Ddc TR:Q9L402 (EMBL:AJ270937) (512 aa) fasta scores: E(): 0%2C 40.0%25 id in 480 aa gene gene1193 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1193 YPO1194 YPO1194 YPO1194 1343908 1344762 - putative sulfurtransferase Similar to many eg. Escherichia coli putative thiosulfate sulfurtransferase SseA SW:THTR_ECOLI (P31142) (280 aa) fasta scores: E(): 0%2C 50.4%25 id in 278 aa%2C and to Homo sapiens 3-mercaptopyruvate sulfurtransferase MpsT or Tst2 SW:THTM_HUMAN (P25325) (296 aa) fasta scores: E(): 0%2C40.4%25 id in 272 aa gene gene1194 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1194 YPO1195 YPO1195 YPO1195 1345498 1346430 + putative substrate-binding transport protein (pseudogene) Similar to Escherichia coli hypothetical 32.6 kDa protein in molR-bglX intergenic region precursor YehZ SW:YEHZ_ECOLI (P33362) (305 aa) fasta scores: E(): 0%2C 70.8%25 id in 301 aa%2C and to Escherichia coli O157:H7 putative transport system permease protein YehZ TR:AAG57263 (EMBL:AE005444) (305 aa) fasta scores: E(): 0%2C 70.5%25 id in 302 aa%2C and to Bacillus subtilis glycine betaine/carnitine/choline-binding protein precursor OpuCC SW:OPCC_BACSU (O32243) (303 aa) fasta scores: E(): 1.5e-11%2C26.1%25 id in 303 aa. There is a stop codon at position 156. The sequence has been checked and is believed to be correct pseudogene gene1195 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1195 YPO1197 YPO1197 YPO1197 1346691 1347845 + putative ABC transport integral membrane subunit Similar to Escherichia coli hypothetical ABC transporter permease protein YehY SW:YEHY_ECOLI (P33361) (385 aa) fasta scores: E(): 0%2C 52.0%25 id in 377 aa gene gene1196 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1197 YPO1198 YPO1198 YPO1198 1347842 1348780 + putative ABC transport ATP-binding subunit Similar to Escherichia coli hypothetical ABC transporter ATP-binding protein YehX yehX SW:YEHX_ECOLI (P33360) (308 aa) fasta scores: E(): 0%2C 66.7%25 id in 306 aa%2Cand to Bacillus subtilis glycine betaine/carnitine/choline transport ATP-binding protein OpucA SW:OPCA_BACSU (O34992) (380 aa) fasta scores: E(): 0%2C 49.5%25 id in 295 aa gene gene1197 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1198 YPO1199 YPO1199 YPO1199 1348777 1349613 + putative ABC transport integral membrane subunit Similar to Escherichia coli hypothetical ABC transporter permease protein YehW SW:YEHW_ECOLI (P33359) (243 aa) fasta scores: E(): 0%2C 62.9%25 id in 237 aa%2C and to Bacillus subtilis choline transport system permease protein SW:OPBB_BACSU (Q45461) (217 aa) fasta scores: E(): 1e-21%2C40.1%25 id in 187 aa gene gene1198 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1199 YPO1200 YPO1200 YPO1200 1350091 1351425 + putative amino acid permease Similar to Escherichia coli hypothetical 46.8 kDa protein in basS-adiY intergenic region YjdE SW:YJDE_ECOLI (P39269) (445 aa) fasta scores: E(): 0%2C 87.6%25 id in 437 aa%2Cand to Escherichia coli probable cadaverine/lysine antiporter CadB SW:CADB_ECOLI (P23891) (444 aa) fasta scores: E(): 0%2C 39.6%25 id in 424 aa gene gene1199 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1200 YPO1201 YPO1201 YPO1201 1351495 1353801 + putative amino acid decarboxylase Similar to Escherichia coli biodegradative arginine decarboxylase AdiA or Adi SW:ADIA_ECOLI (P28629) (755 aa) fasta scores: E(): 0%2C 52.4%25 id in 757 aa%2C and to Vibrio cholerae ornithine decarboxylase%2C inducible VCA1063 TR:Q9KKN9 (EMBL:AE004431) (720 aa) fasta scores: E(): 0%2C34.0%25 id in 633 aa gene gene1200 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1201 YPO1203 YPO1203 YPO1203 1354247 1355137 - putative membrane protein Similar to Escherichia coli hypothetical 32.2 kDa protein in dsrA-vsr intergenic region yedA SW:YEDA_ECOLI (P09185) (306 aa) fasta scores: E(): 0%2C 67.6%25 id in 287 aa%2Cand to Pseudomonas aeruginosa hypothetical protein PA4783 TR:AAG08169 (EMBL:AE004891) (296 aa) fasta scores: E(): 0%2C63.4%25 id in 290 aa gene gene1201 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1203 YPO1205 YPO1205 ompC2 ompC2 1355549 1356664 - outer membrane protein C2 Similar to Salmonella typhi outer membrane protein C precursor OmpC SW:OMPC_SALTI (P09878) (378 aa) fasta scores: E(): 0%2C 60.4%25 id in 384 aa%2C and to Escherichia coli outer membrane protein C precursor OmpC or MeoA or Par SW:OMPC_ECOLI (P06996) (367 aa) fasta scores: E(): 0%2C 58.9%25 id in 384 aa gene gene1202 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1205 YPO1206 YPO1206 dinG dinG 1356934 1359114 + putative ATP-dependent helicase DinG Similar to Escherichia coli probable ATP-dependent helicase DinG or RarB SW:DING_ECOLI (P27296) (716 aa) fasta scores: E(): 0%2C 70.0%25 id in 717 aa%2C and to Vibrio cholerae ATP-dependent helicase%2C DinG family VC1855 TR:Q9KQZ2 (EMBL:AE004261) (703 aa) fasta scores: E(): 0%2C 35.3%25 id in 708 aa gene gene1203 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1206 YPO1207 YPO1207 katA katA 1359182 1360624 - catalase Similar to many eg. Proteus mirabilis catalase KatA SW:CATA_PROMI (P42321) (484 aa) fasta scores: E(): 0%2C 84.9%25 id in 476 aa%2C and to Pseudomonas aeruginosa catalase KatA or PA4236 SW:CATA_PSEAE (O52762) (482 aa) fasta scores: E(): 0%2C 80.4%25 id in 479 aa gene gene1204 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1207 YPO1208 YPO1208 YPO1208 1360997 1361524 + putative exported protein Similar to Escherichia coli hypothetical 18.6 kDa protein in glpC-ais intergenic region precursor YfaZ SW:YFAZ_ECOLI (P76471) (180 aa) fasta scores: E(): 0%2C 51.4%25 id in 175 aa%2C and to Proteus mirabilis hypothetical 11.1 kDa protein TR:Q9K374 (EMBL:AJ400965) (110 aa) fasta scores: E(): 1.4e-14%2C 48.5%25 id in 99 aa gene gene1205 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1208 YPO1209 YPO1209 tyrP tyrP 1361781 1362989 - tyrosine-specific transport protein Similar to Escherichia coli tyrosine-specific transport protein TyrP SW:TYRP_ECOLI (P18199) (403 aa) fasta scores: E(): 0%2C 78.9%25 id in 403 aa%2C and to Vibrio cholerae tyrosine-specific transport protein VCA0772 TR:Q9KLH2 (EMBL:AE004405) (400 aa) fasta scores: E(): 0%2C47.5%25 id in 402 aa%2C and to Escherichia coli tryptophan-specific transport protein Mtr SW:MTR_ECOLI (P22306) (414 aa) fasta scores: E(): 0%2C 33.8%25 id in 399 aa gene gene1206 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1209 YPO1210 YPO1210 YPO1210 1363608 1364801 + conserved hypothetical protein Similar to Escherichia coli CinA-like protein CinA SW:CINA_ECOLI (P77808) (400 aa) fasta scores: E(): 0%2C 59.7%25 id in 395 aa%2C and to Vibrio cholerae competence damage protein CinA%2C putative VC1252 TR:Q9KSK4 (EMBL:AE004204) (415 aa) fasta scores: E(): 0%2C 43.5%25 id in 395 aa gene gene1207 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1210 YPO1211 YPO1211 eco eco 1364859 1365368 - putative ecotin precursor Similar to Escherichia coli ecotin precursor Eco or Eti SW:ECOT_ECOLI (P23827) (162 aa) fasta scores: E(): 0%2C63.2%25 id in 163 aa%2C and to Escherichia coli O157:H7 Ecotin%2Ca serine protease inhibitor Eco TR:AAG57344 (EMBL:AE005453) (162 aa) fasta scores: E(): 0%2C 62.6%25 id in 163 aa%2C and to Leishmania major possible ecotin precursor LM15.534 TR:Q9NMX0 (EMBL:AL160371) (154 aa) fasta scores: E(): 1.1e-13%2C 38.4%25 id in 125 aa gene gene1208 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1211 YPO1212 YPO1212 YPO1212 1365403 1365660 - putative iron-sulphur binding protein Similar to Escherichia coli hypothetical protein YfaE SW:YFAE_ECOLI (P37910) (84 aa) fasta scores: E(): 5.6e-17%2C 62.2%25 id in 82 aa%2C and to Neisseria meningitidis (serogroup A)%2C and putative iron-sulphur binding protein NMA1497 TR:Q9JQU8 (EMBL:AL162756) (96 aa) fasta scores: E(): 4.2e-11%2C 56.5%25 id in 62 aa gene gene1209 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1212 YPO1213 YPO1213 ftsB ftsB 1365664 1366794 - ribonucleoside-diphosphate reductase 1 beta chain Similar to Escherichia coli ribonucleoside-diphosphate reductase 1 beta chain NrdB or FtsB SW:RIR2_ECOLI (P00453) (375 aa) fasta scores: E(): 0%2C88.3%25 id in 375 aa%2C and to Bacteriophage T4 ribonucleoside-diphosphate reductase beta chain NrdB SW:RIR2_BPT4 (P11156) (388 aa) fasta scores: E(): 0%2C 51.4%25 id in 385 aa gene gene1210 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1213 YPO1214 YPO1214 dnaF dnaF 1366957 1369245 - ribonucleoside-diphosphate reductase 1 alpha chain Similar to Escherichia coli ribonucleoside-diphosphate reductase 1 alpha chain NrdA or DnaF SW:RIR1_ECOLI (P00452) (761 aa) fasta scores: E(): 0%2C90.9%25 id in 762 aa%2C and to Bacteriophage T4 ribonucleoside-diphosphate reductase alpha chain NrdA SW:RIR1_BPT4 (P32282) (754 aa) fasta scores: E(): 0%2C 53.1%25 id in 767 aa gene gene1211 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1214 YPO1215 YPO1215 pufX pufX 1369739 1370467 - 3-demethylubiquinone-9 3-methyltransferase Similar to many eg. Escherichia coli 3-demethylubiquinone-9 3-methyltransferase UbiG or PufX SW:UBIG_ECOLI (P17993) (240 aa) fasta scores: E(): 0%2C 80.3%25 id in 238 aa%2C and to Vibrio cholerae 3-demethylubiquinone-9 3-methyltransferase VC1257 TR:Q9KSJ9 (EMBL:AE004205) (245 aa) fasta scores: E(): 0%2C 74.7%25 id in 229 aa gene gene1212 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1215 YPO1216 YPO1216 gyrA gyrA 1370729 1373404 + DNA gyrase subunit A Similar to Escherichia coli DNA gyrase subunit a GyrA or ParD or NalA or HisW SW:GYRA_ECOLI (P09097) (875 aa) fasta scores: E(): 0%2C 85.0%25 id in 878 aa%2C and to Serratia marcescens DNA gyrase GyrA TR:O54355 (EMBL:U56906) (880 aa) fasta scores: E(): 0%2C 90.5%25 id in 886 aa gene gene1213 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1216 YPO1217 YPO1217 rcsC rcsC 1373592 1376465 + two component sensor kinase/response regulator protein RcsC Possibly regulates capsule synthesis. Similar to Escherichia coli sensor protein RcsC SW:RCSC_ECOLI (P14376) (933 aa) fasta scores: E(): 0%2C 58.5%25 id in 934 aa%2C and to Pseudomonas aeruginosa probable sensor/response regulator hybrid PA2824 TR:AAG06212 (EMBL:AE004709) (786 aa) fasta scores: E(): 0%2C 30.0%25 id in 716 aa gene gene1214 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1217 YPO1218 YPO1218 rcsB rcsB 1376533 1377186 - probable two component response regulator component B Possibly regulates capsule synthesis. Similar to Escherichia coli capsular synthesis regulator component B RcsB SW:RCSB_ECOLI (P14374) (216 aa) fasta scores: E(): 0%2C91.2%25 id in 216 aa%2C and to Erwinia amylovora RcsB TR:P96320 (EMBL:Y09848) (215 aa) fasta scores: E(): 0%2C 93.0%25 id in 215 aa gene gene1215 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1218 YPO1219 YPO1219 YPO1219 1377189 1379881 - putative two component sensor kinase (pseudogene) Similar to Escherichia coli probable sensor protein YojN SW:YOJN_ECOLI (P39838) (890 aa) fasta scores: E(): 0%2C46.5%25 id in 890 aa%2C and to Proteus mirabilis regulator of swarming behavior precursor rsbA TR:O85661 (EMBL:AF071215) (897 aa) fasta scores: E(): 0%2C 37.2%25 id in 894 aa. There is a frameshift following codon 642. The frameshift occurs within a homopolymeric tract of 7T. The sequence has been checked and is believed to be correct pseudogene gene1216 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1219 YPO1220 YPO1220 YPO1220 1379777 1379842 - gene gene1218 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1220 YPO1220 YPO1220 YPO1220 1378919 1378984 - gene gene1217 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1220 YPO1221 YPO1221 YPO1221 1379905 1381059 - putative membrane protein Similar to Deinococcus radiodurans transport protein%2C putative dr2502 TR:Q9RRI8 (EMBL:AE002079) (471 aa) fasta scores: E(): 0%2C 39.8%25 id in 367 aa%2C and to Streptomyces coelicolor putative transport protein scl6.05 TR:Q9L111 (EMBL:AL159139) (403 aa) fasta scores: E(): 1.2e-32%2C 36.0%25 id in 367 aa%3B~one of 2 probable transmembrane helices predicted gene gene1219 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1221 YPO1222 YPO1222 ompC ompC 1382092 1383277 + mRNA gene1221 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1222 YPO1223 YPO1223 tnp tnp 1383479 1383937 + transposase for the IS1541 insertion element Similar to Salmonella typhimurium%2C and Salmonella typhi transposase for insertion sequence IS200 TnpA SW:T200_SALTY (Q57334) (152 aa) fasta scores: E(): 0%2C 94.1%25 id in 152 aa. Identical to the Yersinia pseudotuberculosis IS1541-like element transposase Tnp TR:Q9X9F5 (EMBL:AJ238014) (152 aa) fasta scores: E(): 0%2C 100.0%25 id in 152 aa gene gene1222 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1223 YPO1224 YPO1224 ampH ampH 1384727 1385893 - putative penicillin-binding protein Similar to Escherichia coli penicillin-binding protein AmpH SW:AMPH_ECOLI (P46127) (376 aa) fasta scores: E(): 0%2C 62.5%25 id in 376 aa gene gene1223 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1224 YPO1226 YPO1226 YPO1226 1386168 1387664 - putative transport protein Weakly similar to many sugar transporters eg. Escherichia coli melibiose carrier protein MelB SW:MELB_ECOLI (P02921) (469 aa) fasta scores: E(): 7.4e-13%2C23.6%25 id in 478 aa gene gene1224 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1226 YPO1228 YPO1228 YPO1228 1388071 1389099 + conserved hypothetical protein Similar to Pseudomonas aeruginosa hypothetical protein PA3969 TR:AAG07356 (EMBL:AE004814) (361 aa) fasta scores: E(): 0%2C 39.5%25 id in 319 aa%2C and to Streptomyces coelicolor hypothetical protein SC5C7.08 TR:O86705 (EMBL:AL031515) (346 aa) fasta scores: E(): 0%2C 37.0%25 id in 322 aa gene gene1225 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1228 YPO1229 YPO1229 cheD2 cheD2 1389173 1390960 - putative methyl-accepting chemotaxis protein C-terminal region similar to many eg. Escherichia coli methyl-accepting chemotaxis protein I CheD SW:MCP1_ECOLI (P02942) (551 aa) fasta scores: E(): 0%2C 46.6%25 id in 369 aa%2C and to Salmonella typhimurium methyl-accepting chemotaxis citrate transducer Tcp SW:MCPC_SALTY (Q02755) (547 aa) fasta scores: E(): 0%2C 50.1%25 id in 351 aa gene gene1226 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1229 YPO1231 YPO1231 pla2 pla2 1391382 1392317 - putative outer membrane-associated protease Similar to virulence associated proteases eg. Yersinia pestis plasmid pPCP1 coagulase/fibrinolysin precursor Pla SW:COLY_YERPE (P17811) (312 aa) fasta scores: E(): 0%2C 43.5%25 id in 313 aa%2C and to Salmonella typhimurium outer membrane protease E precursor PgtE or PrtA SW:PGTE_SALTY (P06185) (296 aa) fasta scores: E(): 0%2C 47.6%25 id in 248 aa%2C and to Escherichia coli protease VII precursor OmpT SW:OMPT_ECOLI (P09169) (317 aa) fasta scores: E(): 0%2C 40.0%25 id in 290 aa%2C and to Shigella flexneri 2a icsa-cleaving protease IcsP TR:O33641 (EMBL:AF001633) (326 aa) fasta scores: E(): 0%2C 37.2%25 id in 301 aa gene gene1227 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1231 YPO1232 YPO1232 dinI dinI 1392489 1392731 - putative stress response protein Similar to Salmonella typhimurium virulence protein MsgA SW:MSGA_SALTY (Q56031) (79 aa) fasta scores: E(): 1.3e-15%2C 60.8%25 id in 79 aa%2C and to Escherichia coli DNA-damage-inducible protein I DinI SW:DINI_ECOLI (Q47143) (81 aa) fasta scores: E(): 0.00067%2C 30.5%25 id in 82 aa gene gene1228 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1232 YPO1233 YPO1233 YPO1233 1392937 1393659 - putative prophage repressor protein Similar to many cI-like repressors eg. Bacteriophage HK97 prophage repressor cI repressor protein TR:Q9MCQ2 (EMBL:AF069529) (237 aa) fasta scores: E(): 0%2C 47.7%25 id in 237 aa%2C and to Bacteriophage L c2 repressor protein TR:Q37946 (EMBL:X94331) (220 aa) fasta scores: E(): 0%2C50.5%25 id in 218 aa%2C and to Escherichia coli phage lambda repressor protein cI TR:CAB96428 (EMBL:AJ277653) (237 aa) fasta scores: E(): 0%2C 47.3%25 id in 237 aa gene gene1229 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1233 YPO1234 YPO1234 YPO1234 1393933 1394412 + probable phage antitermination protein Q Similar to bacteriophage APSE-1 probable antitermination protein Q SW:REGQ_BPAPS (Q9T1U3) (148 aa) fasta scores: E(): 2.8e-25%2C 55.6%25 id in 124 aa%2C and to bacteriophage 933W%2C and bacteriophage VT2-Sa antitermination protein Q SW:REGQ_BP933 (Q9ZWW9) (144 aa) fasta scores: E(): 1.4e-18%2C 41.2%25 id in 136 aa%2C and to Escherichia coli O157:H7 antiterminator protein Q TR:Q9KXE0 (EMBL:AP000422) (157 aa) fasta scores: E(): 1.5e-18%2C 41.2%25 id in 136 aa gene gene1230 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1234 YPO1235 YPO1235 YPO1235 1394614 1395927 + conserved hypothetical protein Similar to Escherichia coli hypothetical protein YgbK SW:YGBK_ECOLI (Q46889) (388 aa) fasta scores: E(): 0%2C46.9%25 id in 399 aa%2C and to Haemophilus influenzae hypothetical protein HI1011 SW:YGBK_HAEIN (P44093) (413 aa) fasta scores: E(): 0%2C 48.1%25 id in 426 aa gene gene1231 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1235 YPO1236 YPO1236 YPO1236 1395924 1396535 + putative class II aldolase-family protein Similar to Escherichia coli hypothetical protein YgbL SW:YGBL_ECOLI (Q46890) (212 aa) fasta scores: E(): 0%2C57.1%25 id in 168 aa%2C and to Escherichia coli L-fuculose phosphate aldolase FucA or FucC or Prd SW:FUCA_ECOLI (P11550) (215 aa) fasta scores: E(): 2.6e-07%2C 32.7%25 id in 159 aa gene gene1232 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1236 YPO1237 YPO1237 YPO1237 1396615 1397430 + putative transcriptional regulatory protein Similar to Escherichia coli hypothetical transcriptional regulator YgbI SW:YGBI_ECOLI (P52598) (265 aa) fasta scores: E(): 0%2C 42.2%25 id in 258 aa%2C and to Escherichia coli putative Aga operon transcriptional repressor AgaR SW:AGAR_ECOLI (P42902) (269 aa) fasta scores: E(): 2.7e-21%2C 29.8%25 id in 255 aa gene gene1233 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1237 YPO1238 YPO1238 YPO1238 1397448 1398200 + conserved hypothetical protein Similar to hypothetical proteins from both prokaryotes and eukaryotes Escherichia coli hypothetical protein YgbM TR:AAG14983 (EMBL:AF242210) (258 aa) fasta scores: E(): 0%2C 42.5%25 id in 240 aa%2C and to Drosophila melanogaster transient receptor potential locus C protein precursor Gip or CG2227 SW:TRLC_DROME (P36951) (264 aa) fasta scores: E(): 1.6e-28%2C 38.5%25 id in 244 aa gene gene1234 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1238 YPO1239 YPO1239 YPO1239 1398814 1399104 + putative bacteriophage protein Weakly similar to Bacteriophage N15 gp53 protein 53 TR:O64361 (EMBL:AF064539) (101 aa) fasta scores: E(): 0.43%2C25.6%25 id in 78 aa gene gene1235 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1239 YPO1240 YPO1240 YPO1240 1399150 1399767 + putative ATP-binding protein no significant database hits gene gene1236 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1240 YPO1241 YPO1241 YPO1241 1399772 1399966 + putative bacteriophage protein Similar to Bacteriophage Mu protein gp38 SW:VG38_BPMU (P79677) (67 aa) fasta scores: E(): 6.6e-06%2C48.9%25 id in 45 aa%2C and to Haemophilus influenzae Mu-like prophage FluMu protein gp38 HI1510 SW:VG38_HAEIN (P44232) (63 aa) fasta scores: E(): 0.07%2C 37.5%25 id in 40 aa gene gene1237 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1241 YPO1242 YPO1242 YPO1242 1399963 1401471 + putative bacteriophage tail sheath protein Similar to Bacteriophage Mu tail sheath protein L or 39 SW:VPL_BPMU (P79678) (495 aa) fasta scores: E(): 0%2C38.1%25 id in 501 aa%2C and to Haemophilus influenzae Mu-like prophage FluMu tail sheath protein HI1511 SW:VPL_HAEIN (P44233) (487 aa) fasta scores: E(): 0%2C 40.0%25 id in 500 aa%2Cand to Neisseria meningitidis phage sheath protein NMB1104 TR:Q9JZD4 (EMBL:AE002460) (469 aa) fasta scores: E(): 8.7e-10%2C 27.2%25 id in 493 aa gene gene1238 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1242 YPO1243 YPO1243 YPO1243 1401493 1401861 + hypothetical protein no significant database hits gene gene1239 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1243 YPO1244 YPO1244 YPO1244 1401863 1402162 + hypothetical protein no significant database hits gene gene1240 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1244 YPO1245 YPO1245 YPO1245 1402283 1403776 + putative bacteriophage coat protein Contains a region of weak similarity to Aedes albopictus densovirus coat protein VP1 [contains: coat protein vp2] vP SW:COAT_AEDEB (Q90187) (355 aa) fasta scores: E(): 0.92%2C 21.8%25 id in 206 aa gene gene1241 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1245 YPO1246 YPO1246 YPO1246 1404043 1405449 + putative bacteriophage protein Similar to Haemophilus influenzae Mu-like prophage FluMu DNA circulation protein HI1515 SW:VPN_HAEIN (P71389) (455 aa) fasta scores: E(): 1.2e-12%2C 25.3%25 id in 454 aa%2Cand to Bacteriophage Mu DNA circularisation protein N or 43 SW:VPN_BPMU (P08557) (491 aa) fasta scores: E(): 4.4e-08%2C24.6%25 id in 505 aa gene gene1242 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1246 YPO1247 YPO1247 YPO1247 1405446 1406501 + putative bacteriophage tail protein Similar to Bacteriophage Mu 43 kDa tail protein P or 44 SW:VPP_BPMU (P08558) (379 aa) fasta scores: E(): 8.3e-25%2C 28.2%25 id in 351 aa gene gene1243 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1247 YPO1248 YPO1248 YPO1248 1406517 1407113 + putative bacteriophage (baseplate assembly) protein Similar to Neisseria meningitidis (serogroup A) hypothetical protein NMA1321 TR:Q9JQQ9 (EMBL:AL162755) (222 aa) fasta scores: E(): 2.4e-09%2C 36.9%25 id in 130 aa%2C and to Bacteriophage Mu protein gp45 45 SW:VG45_BPMU (Q9T1V4) (197 aa) fasta scores: E(): 0.00018%2C 27.7%25 id in 148 aa gene gene1244 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1248 YPO1249 YPO1249 YPO1249 1407110 1407565 + putative bacteriophage protein GP46 Similar to Bacteriophage Mu protein gp46 46 SW:VG46_BPMU (Q9T1V3) (145 aa) fasta scores: E(): 7.5e-16%2C44.6%25 id in 130 aa%2C and to Haemophilus influenzae Mu-like prophage FluMu protein gp46 hi1519 SW:VG46_HAEIN (P44239) (135 aa) fasta scores: E(): 1.5e-09%2C 32.2%25 id in 146 aa gene gene1245 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1249 YPO1250 YPO1250 YPO1250 1407569 1408705 + putative bacteriophage protein Similar to Bacteriophage Mu protein gp47 47 SW:VG47_BPMU (Q9T1V2) (360 aa) fasta scores: E(): 8.1e-15%2C32.2%25 id in 379 aa%2C and to Haemophilus influenzae Mu-like prophage FluMu protein gp47 hi1520 SW:VG47_HAEIN (P44240) (355 aa) fasta scores: E(): 2.2e-12%2C 31.0%25 id in 384 aa gene gene1246 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1250 YPO1250a YPO1250a YPO1250a 1408702 1408962 + putative bacteriophage protein Similar to Bacteriophage Mu protein gp48 48 SW:VG48_BPMU (Q9T1V1) (180 aa) fasta scores: E(): 1.4e-05%2C33.8%25 id in 74 aa%2C and to Haemophilus influenzae Mu-like prophage FluMu protein gp48 hi1521 SW:VG48_HAEIN (P44241) (168 aa) fasta scores: E(): 3.5%2C 44.1%25 id in 34 aa gene gene1247 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1250a YPO1251 YPO1251 YPO1251 1408959 1409306 + putative bacteriophage protein Similar to Escherichia coli hypothetical 21.6 kDa protein in lambdoid prophage E14 region precursor YmfQ SW:YMFQ_ECOLI (P75982) (194 aa) fasta scores: E(): 6.3e-10%2C33.3%25 id in 123 aa%2C and to Neisseria meningitidis hypothetical protein NMA1324 TR:Q9JUG4 (EMBL:AL162755) (186 aa) fasta scores: E(): 4.4e-05%2C 30.1%25 id in 113 aa%2C and to Shigella flexneri bacteriophage V glucosyl transferase TR:O22003 (EMBL:U82619) (137 aa) fasta scores: E(): 0.00015%2C 30.3%25 id in 99 aa%2C and to Haemophilus influenzae Mu-like prophage FluMu protein gp48 hi1521 SW:VG48_HAEIN (P44241) (168 aa) fasta scores: E(): 0.93%2C 24.3%25 id in 115 aa gene gene1248 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1251 YPO1252 YPO1252 stf stf 1409403 1410182 + putative bacteriophage tail fiber protein Similar to Bacteriophage HK97 tail fiber Stf TR:Q9MCR6 (EMBL:AF069529) (321 aa) fasta scores: E(): 0%2C52.9%25 id in 208 aa%2C and to Escherichia coli DNA inversion product sc/svmR TR:Q47429 (EMBL:X62121) (760 aa) fasta scores: E(): 1.8e-28%2C 49.2%25 id in 177 aa%2C and to Escherichia coli side tail fiber protein homolog from lambdoid prophage S14 StfE or b1157 SW:STFE_ECOLI (P33227) (166 aa) fasta scores: E(): 1.1e-27%2C 49.4%25 id in 166 aa gene gene1249 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1252 YPO1253 YPO1253 YPO1253 1410480 1411220 + putative LacI-family regulatory protein Similar to Bacillus halodurans BH0181 protein TR:Q9KGC3 (EMBL:AP001507) (241 aa) fasta scores: E(): 0%2C46.3%25 id in 240 aa%2C and weakly to Thermotoga maritima transcriptional regulator RpiR family TM1228 TR:Q9X0V5 (EMBL:AE001779) (266 aa) fasta scores: E(): 1.2e-10%2C 23.6%25 id in 233 aa gene gene1250 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1253 YPO1254 YPO1254 bglA bglA 1411511 1412947 + 6-phospho-beta-glucosidase Similar to Escherichia coli 6-phospho-beta-glucosidase BglA SW:BGLA_ECOLI (Q46829) (479 aa) fasta scores: E(): 0%2C 78.6%25 id in 473 aa%2C and to Bacillus subtilis 6-phospho-beta-glucosidase BglA SW:BGLA_BACSU (P42973) (479 aa) fasta scores: E(): 0%2C 63.9%25 id in 476 aa gene gene1251 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1254 YPO1255 YPO1255 YPO1255 1413073 1413435 - hypothetical protein No significant database hits gene gene1252 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1255 YPO1257 YPO1257 YPO1257 1414135 1414623 - hypothetical protein No significant database hits gene gene1253 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1257 YPO1258 YPO1258 YPO1258 1414636 1415784 - conserved hypothetical protein Similar to Escherichia coli hypothetical protein YhhZ SW:YHHZ_ECOLI (P46855) (392 aa) fasta scores: E(): 4.1e-32%2C 36.5%25 id in 323 aa gene gene1254 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1258 YPO1259 YPO1259 YPO1259 1416141 1416524 - putative bacteriophage protein (partial) Similar to internal region of Escherichia coli O157:H7 EDL933 unknown protein encoded by prophage CP-933C z1843 TR:AAG55940 (EMBL:AE005327) (386 aa) fasta scores: E(): 1.5e-22%2C 56.075%25 id in 107 aa. Probable gene remnant%3B~was marked partial gene gene1255 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1259 YPO1260 YPO1260 YPO1260 1416755 1418551 - putative membrane protein Similar to Escherichia coli hypothetical protein YejM SW:YEJM_ECOLI (P33922) (586 aa) fasta scores: E(): 0%2C63.3%25 id in 600 aa%2C and to Vibrio cholerae hypothetical protein VC2041 TR:Q9KQF7 (EMBL:AE004278) (600 aa) fasta scores: E(): 0%2C 41.9%25 id in 604 aa. gene gene1256 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1260 YPO1261 YPO1261 YPO1261 1418579 1418806 - conserved hypothetical protein Similar to Escherichia coli hypothetical protein YejL SW:YEJL_ECOLI (P33921) (75 aa) fasta scores: E(): 5e-21%2C 80.0%25 id in 75 aa%2C and to Vibrio cholerae hypothetical protein VC2040 TR:Q9KQF8 (EMBL:AE004278) (71 aa) fasta scores: E(): 5.7e-12%2C 54.3%25 id in 70 aa%2C and to Haemophilus influenzae hypothetical protein HI0840 SW:YEJL_HAEIN (P44897) (72 aa) fasta scores: E(): 5.5e-09%2C42.9%25 id in 70 aa gene gene1257 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1261 YPO1262 YPO1262 YPO1262 1418984 1419988 + putative nucleoid-associated protein Similar to Escherichia coli nucleoid-associated protein YejK SW:NA37_ECOLI (P33920) (334 aa) fasta scores: E(): 0%2C 79.7%25 id in 330 aa%2C and to Vibrio cholerae hypothetical protein VC2039 TR:Q9KQF9 (EMBL:AE004278) (333 aa) fasta scores: E(): 0%2C 54.4%25 id in 331 aa gene gene1258 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1262 YPO1263 YPO1263 tnp tnp 1420189 1420647 + transposase for the IS1541 insertion element Similar to Salmonella typhimurium%2C and Salmonella typhi transposase for insertion sequence IS200 TnpA SW:T200_SALTY (Q57334) (152 aa) fasta scores: E(): 0%2C 94.1%25 id in 152 aa. Identical to the Yersinia pseudotuberculosis IS1541-like element transposase Tnp TR:Q9X9F5 (EMBL:AJ238014) (152 aa) fasta scores: E(): 0%2C 100.0%25 id in 152 aa gene gene1259 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1263 YPO1264 YPO1264 rplY rplY 1420786 1421070 - 50S ribosomal protein L25 Similar to Escherichia coli 50S ribosomal protein L25 RplY SW:RL25_ECOLI (P02426) (94 aa) fasta scores: E(): 2.7e-26%2C 69.9%25 id in 93 aa%2C and to Haemophilus influenzae 50S ribosomal protein L25 RplY SW:RL25_HAEIN (P45281) (95 aa) fasta scores: E(): 2.3e-21%2C 62.9%25 id in 89 aa gene gene1260 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1264 YPO1265 YPO1265 YPO1265 1421232 1422989 - putative DEAD box helicase family protein Similar to Escherichia coli hypothetical protein YejH SW:YEJH_ECOLI (P33919) (586 aa) fasta scores: E(): 0%2C78.4%25 id in 584 aa%2C and to Lactobacillus casei bacteriophage A2 hypothetical protein TR:Q9T0Y3 (EMBL:AJ251789) (455 aa) fasta scores: E(): 7.7e-10%2C 27.9%25 id in 373 aa%2C and to Vibrio cholerae helicase-related protein VC1636 TR:Q9KRK4 (EMBL:AE004241) (657 aa) fasta scores: E(): 0%2C 59.8%25 id in 572 aa gene gene1261 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1265 YPO1266 YPO1266 rsuA rsuA 1423503 1424210 + ribosomal small subunit pseudouridine synthase A Similar to Escherichia coli ribosomal small subunit pseudouridine synthase A RsuA SW:RSUA_ECOLI (P33918) (231 aa) fasta scores: E(): 0%2C 82.2%25 id in 230 aa%2C and to Haemophilus influenzae ribosomal small subunit pseudouridine synthase A RsuA SW:RSUA_HAEIN (P45124) (232 aa) fasta scores: E(): 0%2C 56.4%25 id in 227 aa gene gene1262 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1266 YPO1267 YPO1267 bcr bcr 1424329 1425528 + probable drug resistance translocator protein Similar to Escherichia coli bicyclomycin resistance protein Bcr SW:BCR_ECOLI (P28246) (396 aa) fasta scores: E(): 0%2C 69.2%25 id in 390 aa%2C and to Vibrio cholerae multidrug resistance protein VC1634 TR:Q9KRK6 (EMBL:AE004241) (401 aa) fasta scores: E(): 0%2C 48.1%25 id in 395 aa gene gene1263 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1267 YPO1269 YPO1269 YPO1269 1426495 1426839 + conserved hypothetical protein Similar to Escherichia coli hypothetical protein YejG SW:YEJG_ECOLI (P33917) (114 aa) fasta scores: E(): 5.8e-24%2C 54.4%25 id in 114 aa gene gene1264 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1269 YPO1270 YPO1270 YPO1270 1426900 1428492 - putative ABC transporter ATP-binding subunit N-terminal region of the CDS is similar to the N-terminus of Bacillus subtilis oligopeptide transport ATP-binding protein OppD SW:OPPD_BACSU (P24136) (358 aa) fasta scores: E(): 0%2C 42.3%25 id in 312 aa. Full length CDS is similar to Escherichia coli hypothetical ABC transporter ATP-binding protein YejF SW:YEJF_ECOLI (P33916) (529 aa) fasta scores: E(): 0%2C 71.4%25 id in 528 aa gene gene1265 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1270 YPO1271 YPO1271 YPO1271 1428494 1429522 - putative ABC transporter integral membrane subunit C-terminus of the CDS is similar to the C-terminal region of Lactococcus lactis (subsp. lactis) oligopeptide transport system permease protein OppC SW:OPPC_LACLA (Q07743) (294 aa) fasta scores: E(): 9.3e-25%2C 34.8%25 id in 227 aa. Full length CDS is similar to Escherichia coli hypothetical ABC transporter permease protein YejE SW:YEJE_ECOLI (P33915) (341 aa) fasta scores: E(): 0%2C 78.5%25 id in 339 aa gene gene1266 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1271 YPO1272 YPO1272 YPO1272 1429522 1430622 - putative ABC transporter integral membrane subunit Similar to Bacillus subtilis oligopeptide transport system permease protein AppB SW:APPB_BACSU (P42062) (317 aa) fasta scores: E(): 8.4e-23%2C 29.9%25 id in 364 aa%2C and to Vibrio cholerae peptide ABC transporter%2C permease protein%2Cputative VCA0590 TR:Q9KLZ9 (EMBL:AE004389) (360 aa) fasta scores: E(): 0%2C 68.6%25 id in 363 aa gene gene1267 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1272 YPO1273 YPO1273 YPO1273 1430632 1432440 - putative substrate-binding transport protein Similar to Bacillus subtilis oligopeptide-binding protein AppA SW:APPA_BACSU (P42061) (543 aa) fasta scores: E(): 2.3e-11%2C 23.4%25 id in 556 aa%2C and to Escherichia coli hypothetical protein YejA SW:YEJA_ECOLI (P33913) (604 aa) fasta scores: E(): 0%2C 67.6%25 id in 598 aa gene gene1268 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1273 YPO1274 YPO1274 YPO1274 1432522 1433895 - putative membrane protein Similar to Escherichia coli hypothetical protein Rtn SW:RTN_ECOLI (P76446) (518 aa) fasta scores: E(): 0%2C 45.1%25 id in 443 aa%2C and to Pseudomonas aeruginosa hypothetical protein PA3825 TR:AAG07212 (EMBL:AE004800) (526 aa) fasta scores: E(): 0%2C 32.4%25 id in 451 aa gene gene1269 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1274 YPO1275 YPO1275 spr spr 1434690 1435274 - putative lipoprotein Similar to Escherichia coli lipoprotein Spr SW:SPR_ECOLI (P77685) (188 aa) fasta scores: E(): 0%2C 68.6%25 id in 191 aa%2C and to Haemophilus influenzae probable lipoprotein HI1652 SW:NLPC_HAEIN (P45296) (183 aa) fasta scores: E(): 3.9e-25%2C 41.3%25 id in 184 aa gene gene1270 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1275 YPO1276 YPO1276 YPO1276 1435716 1436417 - putative membrane protein Similar to Escherichia coli hypothetical protein YeiU SW:YEIU_ECOLI (P76445) (237 aa) fasta scores: E(): 0%2C62.3%25 id in 231 aa%2C and to Pseudomonas aeruginosa hypothetical protein PA5194 TR:AAG08579 (EMBL:AE004932) (267 aa) fasta scores: E(): 1e-10%2C 28.6%25 id in 227 aa gene gene1271 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1276 YPO1277 YPO1277 YPO1277 1436476 1437459 - putative cobalamin synthesis protein Similar to Escherichia coli hypothetical protein YeiR SW:YEIR_ECOLI (P33030) (328 aa) fasta scores: E(): 0%2C67.3%25 id in 324 aa%2C and to Neisseria meningitidis CobW-related protein NMB1263 TR:Q9JZ73 (EMBL:AE002474) (305 aa) fasta scores: E(): 3.9e-27%2C 33.6%25 id in 327 aa gene gene1272 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1277 YPO1278 YPO1278 YPO1278 1437775 1438101 + putative membrane protein Similar to Escherichia coli hypothetical protein precursor YmdA SW:YMDA_ECOLI (P75917) (103 aa) fasta scores: E(): 0.003%2C 27.3%25 id in 99 aa. Regions of weak similarity to fimbrial proteins e%2Cg. Escherichia coli F17A fimbrial subunit precursor F17A TR:Q9R360 (EMBL:AF055309) (181 aa) fasta scores: E(): 0.68%2C 28.8%25 id in 66 aa gene gene1273 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1278 YPO1279 YPO1279 YPO1279 1438210 1439010 + putative transcriptional regulatory protein Similar to Escherichia coli Uxu operon transcriptional regulator UxuR SW:UXUR_ECOLI (P39161) (257 aa) fasta scores: E(): 0%2C 52.9%25 id in 244 aa%2C and to Erwinia chrysanthemi Exu regulon transcriptional regulator ExuR SW:EXUR_ERWCH (Q9X9E0) (259 aa) fasta scores: E(): 0%2C44.9%25 id in 245 aa gene gene1274 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1279 YPO1280 YPO1280 YPO1280 1439154 1440626 - putative D-mannonate oxidoreductase Similar to Escherichia coli hypothetical protein YeiQ SW:YEIQ_ECOLI (P33029) (488 aa) fasta scores: E(): 0%2C64.0%25 id in 483 aa%2C and to Escherichia coli D-mannonate oxidoreductase UxuB SW:UXUB_ECOLI (P39160) (486 aa) fasta scores: E(): 0%2C 59.1%25 id in 489 aa%2C and to Pseudomonas aeruginosa mannitol dehydrogenase MtlD TR:AAG05730 (EMBL:AE004660) (491 aa) fasta scores: E(): 0%2C 42.5%25 id in 482 aa gene gene1275 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1280 YPO1283 YPO1283 uxuA uxuA 1441211 1442404 + mannonate dehydratase Similar to Escherichia coli mannonate dehydratase UxuA SW:UXUA_ECOLI (P24215) (394 aa) fasta scores: E(): 0%2C78.6%25 id in 392 aa%2C and to Haemophilus influenzae mannonate dehydratase UxuA SW:UXUA_HAEIN (P44488) (394 aa) fasta scores: E(): 0%2C 72.2%25 id in 392 aa gene gene1276 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1283 YPO1284 YPO1284 YPO1284 1442544 1443116 - putative elongation factor P C-terminal region is similar to similar to Synechococcus sp elongation factor P Efp SW:EFP_SYNP7 (Q54760) (185 aa) fasta scores: E(): 3.4e-17%2C 31.9%25 id in 188 aa. Similar to the C-terminal region of Escherichia coli hypothetical protein YeiP SW:YEIP_ECOLI (P33028) (275 aa) fasta scores: E(): 0%2C 78.0%25 id in 205 aa. Possible alternative translational start sites. gene gene1277 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1284 YPO1285 YPO1285 mtr mtr 1443220 1444464 - putative tryptophan-specific transport protein Similar to Escherichia coli tryptophan-specific transport protein Mtr SW:MTR_ECOLI (P22306) (414 aa) fasta scores: E(): 0%2C 57.9%25 id in 411 aa%2C and to Pseudomonas aeruginosa tryptophan permease Mtr TR:AAG08819 (EMBL:AE004956) (417 aa) fasta scores: E(): 0%2C 59.2%25 id in 417 aa gene gene1278 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1285 YPO1286 YPO1286 YPO1286 1444839 1445093 + conserved hypothetical protein Similar to Vibrio cholerae putative proteinase inhibitor VC1057 TR:Q9KT48 (EMBL:AE004187) (83 aa) fasta scores: E(): 3e-17%2C 56.1%25 id in 82 aa gene gene1279 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1286 YPO1287 YPO1287 YPO1287 1445162 1445977 - putative short chain oxidoreductase Similar to Gluconobacter oxydans gluconate 5-dehydrogenase Gno SW:GNO_GLUOX (P50199) (256 aa) fasta scores: E(): 9e-27%2C 37.5%25 id in 256 aa%2C and to Thermotoga maritima oxidoreductase%2C short chain dehydrogenase/reductase family TM0297 TR:Q9WYD3 (EMBL:AE001711) (257 aa) fasta scores: E(): 5.4e-32%2C 48.4%25 id in 248 aa gene gene1280 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1287 YPO1288 YPO1288 YPO1288 1445988 1446953 - putative D-isomer specific 2-hydroxyacid dehydrogenase family protein Similar to Streptomyces coelicolor putative dehydrogenase SCE65.14C TR:Q9RKF9 (EMBL:AL133236) (344 aa) fasta scores: E(): 0%2C 35.7%25 id in 297 aa%2C and to Bacillus subtilis D-3-phosphoglycerate dehydrogenase SerA SW:SERA_BACSU (P35136) (525 aa) fasta scores: E(): 5.7e-31%2C36.1%25 id in 291 aa gene gene1281 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1288 YPO1289 YPO1289 YPO1289 1446950 1448092 - conserved hypothetical protein Similar to Streptomyces coelicolor hypothetical protein SCF41.20c TR:Q9RJU9 (EMBL:AL117387) (390 aa) fasta scores: E(): 0%2C 54.7%25 id in 380 aa gene gene1282 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1289 YPO1290 YPO1290 YPO1290 1448444 1449940 + putative aldehyde dehydrogenase Similar to Escherichia coli succinate-semialdehyde dehydrogenase GabD SW:GABD_ECOLI (P25526) (482 aa) fasta scores: E(): 0%2C 43.4%25 id in 470 aa%2C and to Pseudomonas aeruginosa succinate-semialdehyde dehydrogenase GabD TR:AAG03654 (EMBL:AE004464) (483 aa) fasta scores: E(): 0%2C43.3%25 id in 487 aa gene gene1283 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1290 YPO1291 YPO1291 YPO1291 1449944 1451497 + putative carbohydrate kinase Similar to Thermoanaerobacter ethanolicus xylulose kinase XylB TR:O30364 (EMBL:AF001974) (500 aa) fasta scores: E(): 0%2C 40.7%25 id in 511 aa%2C and to Bacillus subtilis xylulose kinase XylB SW:XYLB_BACSU (P39211) (499 aa) fasta scores: E(): 0%2C 36.6%25 id in 517 aa gene gene1284 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1291 YPO1292 YPO1292 rpiA rpiA 1451517 1452227 + putative ribose 5-phosphate isomerase Similar to Methanobacterium thermoautotrophicum probable ribose 5-phosphate isomerase RpiA or NTH608 SW:RPIA_METTH (P72012) (226 aa) fasta scores: E(): 2.7e-28%2C40.5%25 id in 222 aa%2C and to Mus musculus ribose 5-phosphate isomerase RpiA or Rpi SW:RPIA_MOUSE (P47968) (236 aa) fasta scores: E(): 2.7e-22%2C 34.7%25 id in 236 aa gene gene1285 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1292 YPO1293 YPO1293 YPO1293 1452359 1453447 + putative periplasmic carbohydrate-binding transport protein Weakly similar to Vibrio cholerae ribose ABC transporter%2C periplasmic D-ribose-binding protein VCA0130 TR:Q9KN35 (EMBL:AE004354) (294 aa) fasta scores: E(): 8.6e-10%2C 29.0%25 id in 293 aa%2C and to Escherichia coli D-ribose-binding periplasmic protein precursor RbsB SW:RBSB_ECOLI (P02925) (296 aa) fasta scores: E(): 3.3e-09%2C26.5%25 id in 287 aa gene gene1286 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1293 YPO1294 YPO1294 YPO1294 1453556 1455130 + putative ABC transport ATP-binding subunit Similar to Escherichia coli ribose transport ATP-binding protein RbsA SW:RBSA_ECOLI (P04983) (501 aa) fasta scores: E(): 0%2C 33.2%25 id in 497 aa%2C and to Streptomyces coelicolor ABC transporter protein%2C ATP binding component SCC57A.17 TR:Q9RDI1 (EMBL:AL136519) (517 aa) fasta scores: E(): 0%2C 36.6%25 id in 492 aa gene gene1287 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1294 YPO1295 YPO1295 YPO1295 1455166 1456164 + putative ABC transport integral membrane subunit Similar to Bacillus subtilis ribose membrane transport protein RbsC TR:P96731 (EMBL:Z92953) (322 aa) fasta scores: E(): 1.6e-28%2C 35.6%25 id in 292 aa%2C and to Streptomyces coelicolor bifunctional carbohydrate binding and transport protein SCC7A.18 TR:Q9RDI0 (EMBL:AL136519) (651 aa) fasta scores: E(): 4.5e-30%2C 39.2%25 id in 293 aa gene gene1288 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1295 YPO1296 YPO1296 YPO1296 1456277 1456798 - putative Mut family protein Similar to Pseudomonas aeruginosa hypothetical protein PA2769 TR:AAG06157 (EMBL:AE004704) (136 aa) fasta scores: E(): 6.9e-14%2C 41.3%25 id in 138 aa%2C and to Streptomyces coelicolor putative Mut-like protein SCD10.05c TR:Q9K3X1 (EMBL:AL359988) (184 aa) fasta scores: E(): 1.5e-07%2C 37.7%25 id in 114 aa gene gene1289 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1296 YPO1298 YPO1298 fpr fpr 1456994 1458127 + CAL19951.1 Similar to Salmonella typhimurium PTS system%2Cfructose-specific IIa/FPr component FruB SW:PTFA_SALTY (P17127) (376 aa) fasta scores: E(): 0%2C 71.0%25 id in 376 aa%2Cand to Escherichia coli PTS system%2C fructose-specific IIa/FPr component FruB SW:PTFA_ECOLI (P24217) (376 aa) fasta scores: E(): 0%2C 69.4%25 id in 376 aa gene gene1290 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1298 YPO1299 YPO1299 fpk fpk 1458124 1459062 + 1-phosphofructokinase Similar to Escherichia coli 1-phosphofructokinase FruK or Fpk SW:K1PF_ECOLI (P23539) (312 aa) fasta scores: E(): 0%2C 92.0%25 id in 312 aa%2C and to Haemophilus influenzae 1-phosphofructokinase FruK SW:K1PF_HAEIN (P44330) (313 aa) fasta scores: E(): 0%2C 55.4%25 id in 305 aa gene gene1291 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1299 YPO1300 YPO1300 fruA fruA 1459077 1460777 + PTS system%2C fructose-specific IIBC component Similar to Escherichia coli PTS system%2Cfructose-specific IIBC component FruA or PtsF SW:PTFB_ECOLI (P20966) (563 aa) fasta scores: E(): 0%2C 77.2%25 id in 569 aa%2Cand to Vibrio cholerae PTS system%2C fructose-specific IIBC component VCA0516 TR:Q9KM72 (EMBL:AE004382) (580 aa) fasta scores: E(): 0%2C 65.7%25 id in 531 aa gene gene1292 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1300 YPO1301 YPO1301 psaE psaE 1461102 1461746 + putative regulatory protein Previously sequenced as Yersinia pestis%2C and Yersinia pseudotuberculosis PsaE protein%2C possible pH6 antigen regulator SW:PSAE_YERPE (P31524) (214 aa) fasta scores: E(): 0%2C 100.0%25 id in 214 aa. Similar to to Yersinia enterocolitica surface antigen regulatory protein MyfE TR:Q56848 (EMBL:AJ131728) (221 aa) fasta scores: E(): 0%2C52.9%25 id in 221 aa gene gene1293 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1301 YPO1302 YPO1302 psaF psaF 1461743 1462231 + putative membrane protein Previously sequenced as Yersinia pestis PsaF protein SW:PSAF_YERPE (Q56978) (162 aa) fasta scores: E(): 0%2C100.0%25 id in 162 aa%2C and similar to Yersinia enterocolitica MyfF TR:Q56849 (EMBL:U12766) (163 aa) fasta scores: E(): 0%2C54.3%25 id in 162 aa. Predicted to be anchored to the inner membrane with the majority of the protein in the periplasmic space. Possible involvememnt in the regulation of pH 6 antigen expression. gene gene1294 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1302 YPO1303 YPO1303 psaA psaA 1462776 1463252 + pH 6 antigen precursor (antigen 4) (adhesin) Previously sequenced as Yersinia pestis pH 6 antigen precursor PsaA SW:PSAA_YERPE (P31522) (158 aa) fasta scores: E(): 0%2C 100.0%25 id in 158 aa. Similar to Yersinia enterocolitica fimbrial protein MyfA SW:MYFA_YEREN (P33406) (159 aa) fasta scores: E(): 1.8e-22%2C 45.7%25 id in 162 aa gene gene1295 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1303 YPO1304 YPO1304 psaB psaB 1463379 1464200 + chaperone protein PsaB precursor Required for the biogenesis of pH 6 antigen. Previously sequenced as Yersinia pestis%2C and Yersinia pseudotuberculosis chaperone protein PsaB precursor SW:PSAB_YERPE (P31523) (273 aa) fasta scores: E(): 0%2C100.0%25 id in 273 aa. Similar to Escherichia coli chaperone protein AfaB precursor SW:AFAB_ECOLI (P53516) (247 aa) fasta scores: E(): 0%2C 40.9%25 id in 254 aa%2C and to Yersinia pestis F1 capsule Caf1M TR:O68774 (EMBL:AF074611) (269 aa) fasta scores: E(): 1.6e-32%2C 41.4%25 id in 261 aa gene gene1296 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1304 YPO1305 YPO1305 psaC psaC 1464242 1466755 + outer membrane usher protein PsaC precursor Previously sequenced as Yersinia pestis outer membrane usher protein PsaC SW:PSAC_YERPE (P31527) (822 aa) fasta scores: E(): 0%2C 98.1%25 id in 823 aa. Similar to Escherichia coli outer membrane usher protein AfaC SW:AFAC_ECOLI (P53517) (859 aa) fasta scores: E(): 0%2C 42.8%25 id in 838 aa gene gene1297 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1305 YPO1306 YPO1306 nfo nfo 1466842 1467699 - endonuclease IV Similar to Escherichia coli endonuclease IV Nfo SW:END4_ECOLI (P12638) (285 aa) fasta scores: E(): 0%2C 81.3%25 id in 278 aa%2C and to Caenorhabditis elegans DNA- Apn-1 or T05H10.2 SW:APN1_CAEEL (Q10002) (278 aa) fasta scores: E(): 0%2C 46.3%25 id in 259 aa gene gene1298 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1306 YPO1307 YPO1307 YPO1307 1467863 1468951 - putative membrane protein Similar to Escherichia coli hypothetical protein YeiH SW:YEIH_ECOLI (P33019) (349 aa) fasta scores: E(): 0%2C66.4%25 id in 339 aa%2C and to Neisseria meningitidis hypothetical inner membrane protein NMA0465 TR:Q9JWA8 (EMBL:AL162753) (338 aa) fasta scores: E(): 0%2C 49.9%25 id in 339 aa gene gene1299 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1307 YPO1308 YPO1308 YPO1308 1469609 1470481 + putative LysR-family transcriptional regulatory protein Similar to Chromatium vinosum rubisco operon transcriptional regulator RbcR SW:RBCR_CHRVI (P25544) (302 aa) fasta scores: E(): 7.6e-29%2C 34.2%25 id in 295 aa%2C and to Escherichia coli hypothetical transcriptional regulator YeiE SW:YEIE_ECOLI (P32484) (293 aa) fasta scores: E(): 0%2C73.8%25 id in 286 aa gene gene1300 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1308 YPO1309 YPO1309 cadR cadR 1470739 1472250 + putative lysine-specific permease Similar to Escherichia coli lysine-specific permease LysP SW:LYSP_ECOLI (P25737) (488 aa) fasta scores: E(): 0%2C87.6%25 id in 476 aa%2C and to Pseudomonas aeruginosa lysine-specific permease LysP TR:AAG08016 (EMBL:AE004877) (487 aa) fasta scores: E(): 0%2C 72.6%25 id in 481 aa gene gene1301 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1309 YPO1310 YPO1310 YPO1310 1472536 1473681 + putative periplasmic substrate-binding transport protein Similar to Methanococcus jannaschii hypothetical protein MJ0085 SW:Y085_METJA (Q57550) (373 aa) fasta scores: E(): 1.6e-10%2C 26.7%25 id in 352 aa%2C and to Archaeoglobus fulgidus possible iron (III) ABC transporter%2CATP-binding protein (hemV-2) AF0432 TR:O29817 (EMBL:AE001075) (366 aa) fasta scores: E(): 2.3e-09%2C 27.9%25 id in 344 aa gene gene1302 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1310 YPO1311 YPO1311 YPO1311 1473876 1474958 + putative FecCD-family membrane transport protein Similar to Yersinia pestis hemin transport system permease protein HmuU SW:HMUU_YERPE (Q56992) (334 aa) fasta scores: E(): 0%2C 37.3%25 id in 335 aa%2C and to Corynebacterium diphtheriae ABC-type transporter permease HmuU TR:Q9XD88 (EMBL:AF109162) (350 aa) fasta scores: E(): 0%2C 36.3%25 id in 331 aa gene gene1303 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1311 YPO1312 YPO1312 YPO1312 1474955 1475743 + putative siderophore ABC transporter%2C ATP-binding subunit Similar to Vibrio cholerae vibriobactin ABC transporter ATPase ViuC TR:Q9RCF3 (EMBL:U52150) (279 aa) fasta scores: E(): 1.5e-24%2C 37.7%25 id in 239 aa%2C and to Escherichia coli ferric enterobactin transport ATP-binding protein FepC SW:FEPC_ECOLI (P23878) (271 aa) fasta scores: E(): 5.2e-24%2C 34.1%25 id in 264 aa gene gene1304 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1312 YPO1313 YPO1313 YPO1313 1476003 1478000 + putative outer membrane protein Similar to Vibrio cholerae iron-regulated outer membrane virulence protein precursor IrgA SW:IRGA_VIBCH (P27772) (652 aa) fasta scores: E(): 0%2C 46.2%25 id in 671 aa%2Cand to Escherichia coli exogenous ferric siderophore receptor R4 TR:O87518 (EMBL:AF081285) (669 aa) fasta scores: E(): 0%2C 36.9%25 id in 651 aa gene gene1305 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1313 YPO1314 YPO1314 YPO1314 1478270 1478890 - putative glutathione S-transferase-family protein Similar to Pseudomonas aeruginosa probable glutathione S-transferase PA2813 TR:AAG06201 (EMBL:AE004708) (206 aa) fasta scores: E(): 0%2C 51.5%25 id in 206 aa%2C and to Zea mays glutathione S-transferase IV Gst4 SW:GTH4_MAIZE (P46420) (222 aa) fasta scores: E(): 1.8e-12%2C27.1%25 id in 203 aa gene gene1306 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1314 YPO1315 YPO1315 YPO1315 1479044 1479694 - putative hydrolase Similar to Pseudomonas aeruginosa hypothetical protein PA1143 TR:AAG04532 (EMBL:AE004544) (217 aa) fasta scores: E(): 5.4e-29%2C 42.4%25 id in 217 aa%2C and to Streptomyces cyaneus inhibition of morphological differentiation protein SW:IMD_STRCN (O33611) (277 aa) fasta scores: E(): 3.2e-10%2C 29.7%25 id in 219 aa gene gene1307 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1315 YPO1316 YPO1316 YPO1316 1480181 1481248 + putative iron/ascorbate oxidoreductase family protein Similar to Campylobacter jejuni putative iron/ascorbate-dependent oxidoreductase CJ1199 TR:Q9PN96 (EMBL:AL139077) (330 aa) fasta scores: E(): 0%2C 46.8%25 id in 327 aa%2C and to Pseudomonas aeruginosa probable iron/ascorbate oxidoreductase PA4191 TR:AAG07578 (EMBL:AE004835) (334 aa) fasta scores: E(): 1.2e-31%2C 37.1%25 id in 294 aa gene gene1308 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1316 YPO1317 YPO1317 YPO1317 1481476 1482300 + putative exported protein Similar to Pseudomonas aeruginosa hypothetical protein PA3931 TR:AAG07318 (EMBL:AE004811) (259 aa) fasta scores: E(): 0%2C 50.2%25 id in 257 aa%2C and to Streptomyces coelicolor putative lipoprotein SCL11.13c TR:Q9L1C5 (EMBL:AL157953) (275 aa) fasta scores: E(): 0%2C 48.0%25 id in 269 aa%2C and to Pseudomonas aeruginosa probable TonB-dependent receptor PA5505 TR:AAG08890 (EMBL:AE004963) (260 aa) fasta scores: E(): 0%2C 47.7%25 id in 258 aa gene gene1309 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1317 YPO1318 YPO1318 YPO1318 1482297 1483283 + putative ABC transport ATP-binding subunit Similar to Streptomyces coelicolor putative ABC transporter ATP-binding protein SCL11.15c TR:Q9L1C3 (EMBL:AL157953) (368 aa) fasta scores: E(): 0%2C 50.4%25 id in 335 aa%2C and to Escherichia coli ATP-binding protein Abc SW:ABC_ECOLI (P30750) (343 aa) fasta scores: E(): 0%2C 44.7%25 id in 342 aa gene gene1310 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1318 YPO1319 YPO1319 YPO1319 1483280 1483951 + putative ABC transport integral membrane subunit Similar to Streptomyces coelicolor putative ABC transporter permease protein SCL11.14C TR:Q9L1C4 (EMBL:AL157953) (240 aa) fasta scores: E(): 0%2C 54.0%25 id in 211 aa%2C and to Pseudomonas aeruginosa probable permease of ABC transporter PA5504 TR:AAG08889 (EMBL:AE004963) (225 aa) fasta scores: E(): 0%2C 50.0%25 id in 218 aa gene gene1311 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1319 YPO1320 YPO1320 dacC dacC 1484193 1485491 + D-alanyl-D-alanine carboxypeptidase Similar to Escherichia coli penicillin-binding protein 6 precursor DacC SW:DACC_ECOLI (P08506) (400 aa) fasta scores: E(): 0%2C 73.3%25 id in 386 aa%2C to Vibrio cholerae D-alanyl-D-alanine carboxypeptidase VC0947 TR:Q9KTF5 (EMBL:AE004177) (391 aa) fasta scores: E(): 0%2C53.3%25 id in 396 aa and to Yersinia pestis YPO2601 (367 aa) fasta scores:E(): 0%2C 72.3%25 identity in 365 aa overlap gene gene1312 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1320 YPO1321 YPO1321 b2796 b2796 1485931 1487232 - serine transporter Similar to Escherichia coli serine transporter SdaC SW:SDAC_ECOLI (P36559) (429 aa) fasta scores: E(): 0%2C 83.0%25 id in 429 aa%2C and to Aeromonas salmonicida membrane virulence protein AsoA TR:Q44218 (EMBL:U08855) (431 aa) fasta scores: E(): 0%2C 65.6%25 id in 419 aa gene gene1313 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1321 YPO1322 YPO1322 deoR deoR 1488332 1489096 - deoxyribose operon repressor Similar to Escherichia coli deoxyribose operon repressor DeoR SW:DEOR_ECOLI (P06217) (252 aa) fasta scores: E(): 0%2C 56.7%25 id in 252 aa%2C and to Salmonella typhimurium transcriptional activator DeoR TR:O30907 (EMBL:AF020809) (252 aa) fasta scores: E(): 0%2C 57.1%25 id in 252 aa gene gene1314 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1322 YPO1323 YPO1323 deoC deoC 1489326 1489997 - putative deoxyribose-phosphate aldolase Similar to Bacillus subtilis deoxyribose-phosphate aldolase DeoC SW:DEOC_BACSU (P39121) (211 aa) fasta scores: E(): 0%2C 53.0%25 id in 200 aa%2C and to Haemophilus influenzae deoxyribose-phosphate aldolase DeoC SW:DEOC_HAEIN (P44430) (223 aa) fasta scores: E(): 0%2C 61.6%25 id in 224 aa gene gene1315 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1323 YPO1324 YPO1324 YPO1324 1490255 1490851 - putative permease Similar to Bacillus licheniformis bacitracin transport permease protein BcrC SW:BCRC_BACLI (P42334) (203 aa) fasta scores: E(): 1.4e-07%2C 30.0%25 id in 170 aa%2C and to Salmonella typhimurium putative permease Mig-13 TR:O30906 (EMBL:AF020809) (202 aa) fasta scores: E(): 0%2C 57.9%25 id in 197 aa gene gene1316 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1324 YPO1325 YPO1325 YPO1325 1490860 1491675 - putative membrane protein Similar to Pseudomonas aeruginosa hypothetical protein PA4382 TR:AAG07770 (EMBL:AE004854) (264 aa) fasta scores: E(): 1.6e-21%2C 34.1%25 id in 226 aa%2C and to Xylella fastidiosa hypothetical protein XF0374 TR:Q9PGC8 (EMBL:AE003889) (255 aa) fasta scores: E(): 1.8e-15%2C 30.9%25 id in 220 aa gene gene1317 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1325 YPO1326 YPO1326 YPO1326 1492008 1493696 - TrkA%2C Potassium channel-family protein Similar to Escherichia coli hypothetical protein HI0035 TR:P75812 (EMBL:AE000187) (561 aa) fasta scores: E(): 0%2C 90.0%25 id in 560 aa%2C and to Vibrio cholerae hypothetical protein VC1145 TR:Q9KSW1 (EMBL:AE004194) (558 aa) fasta scores: E(): 0%2C 65.1%25 id in 559 aa gene gene1318 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1326 YPO1327 YPO1327 grxA grxA 1494106 1494369 - glutaredoxin 1 Similar to Salmonella typhimurium glutaredoxin 1 GrxA SW:GRX1_SALTY (Q9Z5Z3) (87 aa) fasta scores: E(): 2.1e-29%2C 79.1%25 id in 86 aa%2C and to Escherichia coli glutaredoxin 1 GrxA or grX SW:GLR1_ECOLI (P00277) (85 aa) fasta scores: E(): 1.6e-23%2C 69.9%25 id in 83 aa gene gene1319 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1327 YPO1328 YPO1328 YPO1328 1494832 1495146 + putative membrane protein Similar to Escherichia coli hypothetical protein YbjC SW:YBJC_ECOLI (P46119) (95 aa) fasta scores: E(): 2.5e-09%2C 40.4%25 id in 104 aa gene gene1320 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1328 YPO1329 YPO1329 YPO1329 1495162 1495281 + hypothetical protein No significant database hits gene gene1321 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1329 YPO1330 YPO1330 YPO1330 1495288 1495773 + conserved hypothetical protein Similar to Escherichia coli hypothetical protein YbjN SW:YBJN_ECOLI (P75815) (158 aa) fasta scores: E(): 0%2C68.8%25 id in 157 aa gene gene1322 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1330 YPO1331 YPO1331 potF potF 1496291 1497400 + putrescine-binding periplasmic protein precursor Similar to Escherichia coli putrescine-binding periplasmic protein precursor PotF SW:POTF_ECOLI (P31133) (370 aa) fasta scores: E(): 0%2C 85.9%25 id in 370 aa%2C and to Pseudomonas fluorescens putative putrescine/spermidine binding protein TR:O69760 (EMBL:L49465) (377 aa) fasta scores: E(): 0%2C 52.6%25 id in 352 aa gene gene1323 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1331 YPO1332 YPO1332 potG potG 1497571 1498704 + putrescine transport ATP-binding protein Similar to Escherichia coli putrescine transport ATP-binding protein PotG SW:POTG_ECOLI (P31134) (404 aa) fasta scores: E(): 0%2C 86.7%25 id in 375 aa%2C and to Pseudomonas aeruginosa polyamine transport protein PotG TR:AAG03691 (EMBL:AE004468) (384 aa) fasta scores: E(): 0%2C63.7%25 id in 364 aa gene gene1324 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1332 YPO1333 YPO1333 potH potH 1498729 1499694 + putrescine transport system permease protein Similar to Escherichia coli putrescine transport system permease protein PotH SW:POTH_ECOLI (P31135) (317 aa) fasta scores: E(): 0%2C 80.6%25 id in 310 aa%2C and to Pseudomonas aeruginosa polyamine transport protein poth PotH TR:AAG03692 (EMBL:AE004468) (293 aa) fasta scores: E(): 0%2C 64.3%25 id in 291 aa gene gene1325 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1333 YPO1334 YPO1334 potI potI 1499691 1500536 + putrescine transport system permease protein Similar to Escherichia coli putrescine transport system permease protein PotI SW:POTI_ECOLI (P31136) (281 aa) fasta scores: E(): 0%2C 84.3%25 id in 280 aa%2C and to Pseudomonas aeruginosa polyamine transport protein PotI TR:AAG03693 (EMBL:AE004468) (289 aa) fasta scores: E(): 0%2C63.4%25 id in 265 aa gene gene1326 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1334 YPO1335 YPO1335 YPO1335 1500661 1501125 + putative membrane protein Similar to Escherichia coli hypothetical protein YbjO SW:YBJO_ECOLI (P75816) (162 aa) fasta scores: E(): 2.9e-21%2C 40.7%25 id in 150 aa gene gene1327 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1335 YPO1336 YPO1336 YPO1336 1501209 1502339 + putative RNA methyltransferase Similar to Escherichia coli hypothetical RNA methyltransferase YbjF SW:YBJF_ECOLI (P75817) (375 aa) fasta scores: E(): 0%2C 74.7%25 id in 372 aa%2C and to Haemophilus influenzae hypothetical RNA methyltransferase HI0958 SW:YBJF_HAEIN (P44083) (392 aa) fasta scores: E(): 0%2C 56.6%25 id in 389 aa gene gene1328 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1336 YPO1337 YPO1337 artJ artJ 1502466 1502735 - arginine-binding periplasmic protein 2 precursor (pseudogene) Similar to Escherichia coli arginine-binding periplasmic protein 2 precursor ArtJ SW:ARTJ_ECOLI (P30860) (243 aa) fasta scores: E(): 0%2C 78.6%25 id in 243 aa%2C and to Escherichia coli arginine-binding periplasmic protein 1 precursor ArtI SW:ARTI_ECOLI (P30859) (243 aa) fasta scores: E(): 0%2C 67.5%25 id in 243 aa. Disrupted by the isertion of an IS100 element after codon 154. pseudogene gene1329 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1337 YPO1338 YPO1338 y1093 y1093 1502827 1503849 + transposase for insertion sequence IS100 Similar to Escherichia coli transposase for insertion sequence element IS21 IstA SW:ISTA_ECOLI (P15025) (390 aa) fasta scores: E(): 3e-27%2C 33.1%25 id in 329 aa. Identical to the previously sequenced Yersinia pestis%2CYersinia pseudotuberculosis%2C and Escherichia coli pesticin plasmid insertion sequence transposase Y1055 TR:P74993 (EMBL:U59875) (340 aa) fasta scores: E(): 0%2C 100.0%25 id in 340 aa gene gene1330 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1338 YPO1339 YPO1339 ypmt1.57c ypmt1.57c 1503846 1504628 + insertion sequence IS100%2C ATP-binding protein Similar to Escherichia coli insertion sequence IS21 putative ATP-binding protein%2C IstB SW:ISTB_ECOLI (P15026) (265 aa) fasta scores: E(): 0%2C 47.4%25 id in 249 aa. Also almost identical to Yersinia pestis and Escherichia coli putative IS100 transposase ypmt1.57c TR:Q9R3L5 (EMBL:AL117211) (260 aa) fasta scores: E(): 0%2C 99.6%25 id in 260 aa. gene gene1331 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1339 YPO1341 YPO1341 YPO1341 1505404 1505634 + hypothetical protein No significant database hits gene gene1332 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1341 YPO1342 YPO1342 YPO1342 1505975 1506901 + putative SPFH domain protein Similar to Toxocara canis prohibitin-like molecule TC-PRO-1 TR:O01720 (EMBL:U97204) (274 aa) fasta scores: E(): 5.7e-05%2C 23.3%25 id in 232 aa%2C and to Yersinia pestis plasmid pMT-1 encoded%2C putative serine protease y1114 TR:O68763 (EMBL:AF074611) (276 aa) fasta scores: E(): 6.1e-07%2C 24.7%25 id in 292 aa gene gene1333 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1342 YPO1343 YPO1343 YPO1343 1507268 1508404 + putative periplasmic binding protein Similar to Vibrio cholerae vibriobactin and enterobactin periplasmic binding protein ViuP TR:Q9RCF6 (EMBL:U52150) (325 aa) fasta scores: E(): 0.00051%2C 25.9%25 id in 259 aa%2C and to Thermotoga maritima possible iron(III) ABC transporter%2C periplasmic iron-binding protein TM0189 TR:Q9WY32 (EMBL:AE001704) (358 aa) fasta scores: E(): 0.0025%2C 24.9%25 id in 374 aa gene gene1334 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1343 YPO1344 YPO1344 YPO1344 1508555 1509460 + FecCD transport family protein C-terminal domain similar to C-terminal region of Corynebacterium diphtheriae putative iron acquisition protein HmuU TR:Q9XD88 (EMBL:AF109162) (350 aa) fasta scores: E(): 7.4e-17%2C 36.7%25 id in 169 aa%2C and to Methanococcus jannaschii putative ABC transporter permease protein Mj0087 SW:Y087_METJA (Q57552) (349 aa) fasta scores: E(): 3.4e-20%2C 36.2%25 id in 185 aa gene gene1335 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1344 YPO1345 YPO1345 YPO1345 1509457 1510242 + putative transport ATP-binding protein Similar to Escherichia coli ferrichrome transport ATP-binding protein FhuC SW:FHUC_ECOLI (P07821) (265 aa) fasta scores: E(): 2.7e-22%2C 32.8%25 id in 259 aa%2C and to Streptomyces coelicolor Fe uptake system permease FtrE TR:CAC14366 (EMBL:AL445963) (272 aa) fasta scores: E(): 8.8e-22%2C 34.2%25 id in 260 aa gene gene1336 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1345 YPO1346 YPO1346 YPO1346 1510239 1511027 + conserved hypothetical protein Similar to Pseudomonas aeruginosa hypothetical protein PA4836 TR:AAG08221 (EMBL:AE004896) (263 aa) fasta scores: E(): 4e-21%2C 34.4%25 id in 259 aa gene gene1337 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1346 YPO1347 YPO1347 YPO1347 1511020 1512390 + putative exported protein Similar to Pseudomonas aeruginosa hypothetical protein PA4835 TR:AAG08220 (EMBL:AE004896) (433 aa) fasta scores: E(): 0%2C 40.0%25 id in 447 aa%2C and to Bacillus halodurans hypothtetical protein BH2073 TR:Q9KB58 (EMBL:AP001514) (436 aa) fasta scores: E(): 3.7e-26%2C 30.0%25 id in 414 aa gene gene1338 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1347 YPO1348 YPO1348 YPO1348 1512387 1513232 + putative membrane protein Similar to Pseudomonas aeruginosa hypothetical protein PA4834 TR:AAG08219 (EMBL:AE004896) (284 aa) fasta scores: E(): 0%2C 55.7%25 id in 280 aa%2C and to Pseudomonas aeruginosa hypothetical protein PA2628 TR:AAG06016 (EMBL:AE004691) (296 aa) fasta scores: E(): 6.6e-28%2C 33.2%25 id in 283 aa gene gene1339 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1348 YPO1349 YPO1349 artM artM 1513422 1514090 - arginine transport system permease protein Similar to Escherichia coli arginine transport system permease protein ArtM SW:ARTM_ECOLI (P30862) (222 aa) fasta scores: E(): 0%2C 81.1%25 id in 222 aa%2C and to Vibrio cholerae arginine ABC transporter%2C permease protein VCA0757 TR:Q9KLI7 (EMBL:AE004404) (222 aa) fasta scores: E(): 0%2C61.9%25 id in 218 aa gene gene1340 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1349 YPO1350 YPO1350 artQ artQ 1514090 1514806 - arginine transport system permease protein Similar to Escherichia coli arginine transport system permease protein ArtQ SW:ARTQ_ECOLI (P30861) (238 aa) fasta scores: E(): 0%2C 79.4%25 id in 238 aa%2C and to Haemophilus influenzae arginine transport system permease protein ArtQ SW:ARTQ_HAEIN (P45090) (221 aa) fasta scores: E(): 2e-32%2C 57.3%25 id in 227 aa gene gene1341 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1350 YPO1351 YPO1351 artI artI 1514818 1515549 - arginine-binding periplasmic protein 1 precursor Similar to Escherichia coli arginine-binding periplasmic protein 1 precursor ArtI SW:ARTI_ECOLI (P30859) (243 aa) fasta scores: E(): 0%2C 74.1%25 id in 243 aa%2C and to Escherichia coli arginine-binding periplasmic protein 2 precursor ArtJ SW:ARTJ_ECOLI (P30860) (243 aa) fasta scores: E(): 0%2C 67.9%25 id in 243 aa. Similar to Yersinia pestis CDS YPO134 (172 aa)fasta scores: E(): 0%2C 72.1%25 identity in 154 aa overlap gene gene1342 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1351 YPO1352 YPO1352 artP artP 1515570 1516298 - arginine transport ATP-binding protein Similar to Escherichia coli arginine transport ATP-binding protein ArtP SW:ARTP_ECOLI (P30858) (242 aa) fasta scores: E(): 0%2C 86.8%25 id in 242 aa%2C and to Pasteurella multocida possible arginine transport ATP-binding protein ArtP TR:AAK02207 (EMBL:AE006047) (243 aa) fasta scores: E(): 0%2C 67.9%25 id in 243 aa gene gene1343 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1352 YPO1353 YPO1353 YPO1353 1516593 1517153 - putative chorismate mutase Similar to Erwinia herbicola monofunctional chorismate mutase precursor AroQ SW:CHMU_ERWHE (P42517) (181 aa) fasta scores: E(): 2.1e-16%2C 34.9%25 id in 169 aa%2Cand to Meloidogyne javanica chorismate mutase NC30 TR:Q9XTN9 (EMBL:AF095950) (191 aa) fasta scores: E(): 0.045%2C 25.8%25 id in 132 aa gene gene1344 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1353 YPO1354 YPO1354 YPO1354 1517323 1517898 - putative lipoprotein Similar to Escherichia coli putative lipoprotein YbjP precursor SW:YBJP_ECOLI (P75818) (171 aa) fasta scores: E(): 3.9e-08%2C 45.8%25 id in 192 aa gene gene1345 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1354 YPO1355 YPO1355 YPO1355 1517995 1519002 - conserved hypothetical protein Similar to Escherichia coli hypothetical protein B0868 TR:P75821 (EMBL:AE000188) (349 aa) fasta scores: E(): 0%2C 72.8%25 id in 335 aa%2C and to Yersinia pestis hypothetical protein MG1655 TR:Q9ZC81 (EMBL:AL031866) (338 aa) fasta scores: E(): 0%2C 46.2%25 id in 329 aa gene gene1346 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1355 YPO1356 YPO1356 YPO1356 1519102 1520592 - putative membrane protein Similar to Escherichia coli hypothetical protein YbjT SW:YBJT_ECOLI (P75822) (476 aa) fasta scores: E(): 0%2C62.3%25 id in 478 aa%2C and to Vibrio cholerae hypothetical protein VC1632 TR:Q9KRK8 (EMBL:AE004241) (478 aa) fasta scores: E(): 0%2C 47.0%25 id in 483 aa gene gene1347 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1356 YPO1357 YPO1357 ltaA ltaA 1520589 1521608 - L-allo-threonine aldolase Similar to Aeromonas jandaei L-allo-threonine aldolase LtaA SW:LTAA_AERJA (O07051) (338 aa) fasta scores: E(): 0%2C 55.9%25 id in 333 aa%2C and to Similar to Escherichia coli L-allo-threonine aldolase YbjU SW:LTAA_ECOLI (P75823) (333 aa) fasta scores: E(): 0%2C 69.2%25 id in 334 aa gene gene1348 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1357 YPO1358 YPO1358 poxB poxB 1521957 1523678 - pyruvate dehydrogenase [cytochrome] Similar to Escherichia coli pyruvate dehydrogenase [cytochrome] PoxB SW:POXB_ECOLI (P07003) (572 aa) fasta scores: E(): 0%2C 79.2%25 id in 573 aa%2C and to Streptomyces coelicolor pyruvate dehydrogenase SC1A9.19 TR:Q9ZBT3 (EMBL:AL034446) (580 aa) fasta scores: E(): 0%2C 52.4%25 id in 571 aa gene gene1349 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1358 YPO1359 YPO1359 hcr hcr 1523822 1524844 - putative oxidoreductase Similar to Escherichia coli NADH oxidoreductase Hcr SW:HCR_ECOLI (P75824) (322 aa) fasta scores: E(): 0%2C 59.5%25 id in 331 aa%2C and to Acinetobacter sp aniline dioxygenase reductase component atdA5 TR:Q44253 (EMBL:D86080) (336 aa) fasta scores: E(): 2.3e-20%2C 27.4%25 id in 325 aa gene gene1350 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1359 YPO1360 YPO1360 hcp hcp 1524958 1526610 - putative prismane protein homologue Similar to Desulfovibrio vulgaris iron-sulfur containing prismane protein Hcp SW:PRIS_DESVH (P31101) (553 aa) fasta scores: E(): 0%2C 40.3%25 id in 568 aa%2C and to Escherichia coli prismane protein homologue Hcp SW:PRIS_ECOLI (P75825) (550 aa) fasta scores: E(): 0%2C 75.2%25 id in 548 aa. The protein is only detected in E. coli when grown anaerobically in the presence of nitrate or nitrite. gene gene1351 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1360 YPO1361 YPO1361 YPO1361 1526812 1527708 - putative membrane protein Similar to Escherichia coli hypothetical protein YbjE SW:YBJE_ECOLI (P75826) (315 aa) fasta scores: E(): 0%2C71.5%25 id in 298 aa%2C and to Vibrio cholerae hypothetical protein VC1151 TR:Q9KSV5 (EMBL:AE004195) (301 aa) fasta scores: E(): 0%2C 50.2%25 id in 297 aa gene gene1352 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1361 YPO1362 YPO1362 YPO1362 1528061 1529728 + conserved hypothetical protein Similar to Escherichia coli hypothetical protein YbjD SW:YBJD_ECOLI (P75828) (552 aa) fasta scores: E(): 0%2C64.4%25 id in 554 aa%2C and to Vibrio cholerae hypothetical protein VCA0544 TR:Q9KM45 (EMBL:AE004385) (554 aa) fasta scores: E(): 0%2C 45.1%25 id in 554 aa gene gene1353 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1362 YPO1363 YPO1363 YPO1363 1529865 1530812 - putative virulence factor Similar to Shigella flexneri large plasmid (pMYSH6000) encoded protein%2C essential for intercellular spreading and virulence%2C VirK TR:Q52617 (EMBL:D11025) (316 aa) fasta scores: E(): 0%2C 34.8%25 id in 296 aa%2C and to Escherichia coli hypothetical protein YbjX SW:YBJX_ECOLI (P75829) (330 aa) fasta scores: E(): 0%2C 45.4%25 id in 315 aa gene gene1354 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1363 YPO1364 YPO1364 YPO1364 1531046 1532161 + putative HlyD family secretion protein Similar to Escherichia coli hypothetical protein YbjY SW:YBJY_ECOLI (P75830) (371 aa) fasta scores: E(): 0%2C65.1%25 id in 364 aa%2C and to Pseudomonas syringae putative membrane fusion protein precursor MfpA TR:AAG22807 (EMBL:AF297012) (400 aa) fasta scores: E(): 2.6e-28%2C 42.4%25 id in 321 aa gene gene1355 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1364 YPO1365 YPO1365 YPO1365 1532161 1534110 + putative ABC transporter ATP-binding protein Similar to Escherichia coli hypothetical ABC transporter ATP-binding protein YbjZ SW:YBJZ_ECOLI (P75831) (648 aa) fasta scores: E(): 0%2C 69.5%25 id in 653 aa%2C and to Neisseria meningitidis ABC transporter%2C ATP-binding protein NMB0549 TR:Q9K0N7 (EMBL:AE002410) (644 aa) fasta scores: E(): 0%2C 51.0%25 id in 649 aa. CDS is similar to Yersinia pestis YPO3000 (678 aa) fasta scores: E(): 0%2C 53.8%25 identity in 669 aa overlap gene gene1356 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1365 YPO1366 YPO1366 cspD cspD 1534391 1534654 - cold shock-like protein Similar to Escherichia coli cold shock-like protein CspD SW:CSPD_ECOLI (P24245) (74 aa) fasta scores: E(): 3e-25%2C 87.3%25 id in 71 aa%2C and to Vibrio cholerae cold shock-like protein CspD TR:Q9KSW4 (EMBL:AE004194) (76 aa) fasta scores: E(): 1.1e-20%2C 77.5%25 id in 71 aa gene gene1357 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1366 YPO1367 YPO1367 YPO1367 1535015 1535335 + conserved hypothetical protein Similar to Escherichia coli hypothetical protein YljA SW:YLJA_ECOLI (P75832) (106 aa) fasta scores: E(): 0%2C84.9%25 id in 106 aa%2C and to Vibrio cholerae hypothetical protein VC1143 vc1143 TR:Q9KSW3 (EMBL:AE004194) (106 aa) fasta scores: E(): 1.3e-31%2C 67.0%25 id in 106 aa gene gene1358 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1367 YPO1368 YPO1368 clpA clpA 1535361 1537637 + ATP-dependent Clp protease ATP-binding subunit Similar to Escherichia coli ATP-dependent Clp protease ATP-binding subunit ClpA SW:CLPA_ECOLI (P15716) (758 aa) fasta scores: E(): 0%2C 89.432%25 id in 757 aa%2C and to Vibrio cholerae ATP-dependent Clp protease%2C ATP-binding subunit ClpA TR:Q9KSW2 (EMBL:AE004194) (756 aa) fasta scores: E(): 3.8e-209%2C 77.303%25 id in 749 aa gene gene1359 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1368 YPO1369 YPO1369 tnp tnp 1537930 1538388 + transposase for the IS1541 insertion element Similar to Salmonella typhimurium and Salmonella typhi transposase for insertion sequence IS200%2C TnpA%2CSW:TNPA_SALTY (Q57334) (152 aa) fasta scores: E(): 0%2C 93.4%25 id in 152 aa. Almost identical to the Yersinia pseudotuberculosis IS1541-like element transposase Tnp TR:Q9X9F5 (EMBL:AJ238014) (152 aa) fasta scores: E(): 0%2C99.3%25 id in 152 aa gene gene1360 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1369 YPO1370 YPO1370 infA infA 1538760 1538978 - translation initiation factor IF-1 Similar to Escherichia coli translation initiation factor IF-1 InfA SW:IF1_ECOLI (P02998) (71 aa) fasta scores: E(): 6.7e-27%2C 98.6%25 id in 71 aa%2C and to Vibrio cholerae translation initiation factor IF-1 InfA TR:Q9KRA5 (EMBL:AE004251) (72 aa) fasta scores: E(): 1.1e-26%2C 95.8%25 id in 72 aa gene gene1361 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1370 YPO1371 YPO1371 aat aat 1539144 1539854 - putative leucyl/phenylalanyl-tRNA-protein transferase Similar to Escherichia coli leucyl/phenylalanyl-tRNA--protein transferase Aat SW:LPTP_ECOLI (P23885) (234 aa) fasta scores: E(): 0%2C 68.1%25 id in 232 aa%2C and to Vibrio cholerae leucyl/phenylalanyl-tRNA--protein transferase VC1735 TR:Q9KRA7 (EMBL:AE004251) (243 aa) fasta scores: E(): 0%2C49.1%25 id in 230 aa gene gene1362 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1371 YPO1372 YPO1372 cydC cydC 1540073 1541797 - transport ATP-binding protein Similar to Escherichia coli transport ATP-binding protein CydC SW:CYDC_ECOLI (P23886) (573 aa) fasta scores: E(): 0%2C 65.6%25 id in 572 aa%2C and to Shigella flexneri putative ABC transporter CydC TR:O52574 (EMBL:AF040718) (573 aa) fasta scores: E(): 0%2C 64.9%25 id in 572 aa. In E. coli%2C functional CydC is necessary for the formation of the cytochrome bd quinol oxidase gene gene1363 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1372 YPO1373 YPO1373 cydD cydD 1541800 1543584 - transport ATP-binding protein Similar to Escherichia coli transport ATP-binding protein CydD SW:CYDD_ECOLI (P29018) (588 aa) fasta scores: E(): 0%2C 65.6%25 id in 588 aa%2C and to Providencia stuartii transport ATP-binding protein AarD SW:AARD_PROST (Q52402) (588 aa) fasta scores: E(): 0%2C 69.9%25 id in 588 aa. In E. coli%2C functional CydD is necessary for the formation of the cytochrome bd quinol oxidase gene gene1364 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1373 YPO1374 YPO1374 trxB trxB 1544025 1544987 - thioredoxin reductase Similar to Escherichia coli thioredoxin reductase TrxB SW:TRXB_ECOLI (P09625) (320 aa) fasta scores: E(): 0%2C85.3%25 id in 319 aa%2C and to Vibrio cholerae thioredoxin reductase VC1182 TR:Q9KSS4 (EMBL:AE004198) (318 aa) fasta scores: E(): 0%2C 84.4%25 id in 314 aa gene gene1365 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1374 YPO1375 YPO1375 alsB alsB 1545754 1546248 + leucine-responsive regulatory protein Similar to Escherichia coli and Enterobacter aerogenes leucine-responsive regulatory protein Lrp SW:LRP_ECOLI (P19494) (163 aa) fasta scores: E(): 0%2C 93.9%25 id in 163 aa%2C and to Salmonella typhimurium leucine-responsive regulatory protein Lrp SW:LRP_SALTY (P37403) (163 aa) fasta scores: E(): 0%2C 93.9%25 id in 163 aa gene gene1366 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1375 YPO1376 YPO1376 ftsK ftsK 1546371 1550288 + putative cell division protein Similar to Escherichia coli cell division protein FtsK SW:FTSK_ECOLI (P46889) (1329 aa) fasta scores: E(): 0%2C54.1%25 id in 1411 aa%2C and to Vibrio cholerae putative cell division protein FtsK TR:Q9KQU5 (EMBL:AE004266) (960 aa) fasta scores: E(): 0%2C 41.5%25 id in 1298 aa gene gene1367 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1376 YPO1377 YPO1377 lolA lolA 1550481 1551089 + putative outer-membrane lipoproteins carrier protein Similar to Escherichia coli outer-membrane lipoproteins carrier protein precursor LolA SW:LOLA_ECOLI (P39178) (204 aa) fasta scores: E(): 0%2C 70.3%25 id in 202 aa%2Cand to Haemophilus influenzae outer-membrane lipoproteins carrier protein precursor LolA SW:LOLA_HAEIN (P45263) (205 aa) fasta scores: E(): 0%2C 47.3%25 id in 203 aa gene gene1368 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1377 YPO1378 YPO1378 YPO1378 1551100 1552443 + putative ATPase protein Similar to Escherichia coli hypothetical protein YcaJ SW:YCAJ_ECOLI (P45526) (447 aa) fasta scores: E(): 0%2C86.1%25 id in 447 aa%2C and to Haemophilus influenzae hypothetical protein HI1590 SW:YCAJ_HAEIN (P45262) (446 aa) fasta scores: E(): 0%2C 70.7%25 id in 447 aa gene gene1369 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1378 YPO1379 YPO1379 serS serS 1552685 1553977 + seryl-tRNA synthetase Similar to Escherichia coli seryl-tRNA synthetase SerS SW:SYS_ECOLI (P09156) (430 aa) fasta scores: E(): 0%2C84.9%25 id in 430 aa%2C and to Haemophilus influenzae seryl-tRNA synthetase SerS SW:SYS_HAEIN (P43833) (429 aa) fasta scores: E(): 0%2C 75.9%25 id in 431 aa gene gene1370 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1379 YPO1380 YPO1380 YPO1380 1554240 1555388 + putative membrane protein Similar to Escherichia coli hypothetical protein YcaD SW:YCAD_ECOLI (P21503) (382 aa) fasta scores: E(): 0%2C65.7%25 id in 382 aa%2C and to Vibrio cholerae hypothetical protein VCA0753 TR:Q9KLJ1 (EMBL:AE004404) (384 aa) fasta scores: E(): 2.6e-30%2C 31.0%25 id in 378 aa gene gene1371 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1380 YPO1381 YPO1381 act act 1555542 1556276 - pyruvate formate-lyase 1 activating enzyme Similar to Escherichia coli pyruvate formate-lyase 1 activating enzyme PflA SW:PFLA_ECOLI (P09374) (245 aa) fasta scores: E(): 0%2C 88.5%25 id in 244 aa%2C and to Pasteurella multocida Act TR:AAK02161 (EMBL:AE006043) (246 aa) fasta scores: E(): 0%2C 76.6%25 id in 244 aa gene gene1372 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1381 YPO1382 YPO1382 YPO1382 1557263 1557937 + hypothetical protein Weak similarity to Pasteurella haemolytica LPS biosynthesis protein LpsA SW:LPSA_PASHA (Q05770) (263 aa) fasta scores: E(): 0.04%2C 27.0%25 id in 159 aa%2C and to Actinobacillus pleuropneumoniae putative LPS biosynthesis protein TR:Q9X6Q5 (EMBL:AF143905) (224 aa) fasta scores: E(): 0.041%2C 28.5%25 id in 186 aa gene gene1373 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1382 YPO1383 YPO1383 pfl pfl 1558055 1560337 - formate acetyltransferase 1 Similar to Escherichia coli formate acetyltransferase 1 PflB SW:PFLB_ECOLI (P09373) (759 aa) fasta scores: E(): 0%2C 90.5%25 id in 759 aa%2C and to Vibrio cholerae formate acetyltransferase VC1866 TR:Q9KQY1 (EMBL:AE004262) (787 aa) fasta scores: E(): 0%2C 82.6%25 id in 758 aa gene gene1374 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1383 YPO1384 YPO1384 focA focA 1560393 1561250 - putative formate transporter 1 Similar to Escherichia coli probable formate transporter 1 FocA SW:FOCA_ECOLI (P21501) (285 aa) fasta scores: E(): 0%2C 82.1%25 id in 285 aa%2C and to Haemophilus influenzae probable formate transporter FocA SW:FOCA_HAEIN (P43756) (284 aa) fasta scores: E(): 0%2C 56.1%25 id in 264 aa gene gene1375 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1384 YPO1385 YPO1385 YPO1385 1561947 1563713 - conserved hypothetical protein Similar to Escherichia coli hypothetical protein YcaO SW:YCAO_ECOLI (P75838) (586 aa) fasta scores: E(): 0%2C80.2%25 id in 586 aa%2C and to Haemophilus influenzae hypothetical protein HI1265 SW:YCAO_HAEIN (P44144) (587 aa) fasta scores: E(): 0%2C 67.8%25 id in 583 aa gene gene1376 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1385 YPO1386 YPO1386 ansB ansB 1563862 1564899 + putative L-asparaginase II precursor Similar to Escherichia coli L-asparaginase II precursor AnsB SW:ASG2_ECOLI (P00805) (348 aa) fasta scores: E(): 0%2C 73.6%25 id in 348 aa%2C and to Haemophilus influenzae probable L-asparaginase periplasmic precursor AnsB SW:ASG2_HAEIN (P43843) (349 aa) fasta scores: E(): 0%2C63.9%25 id in 349 aa gene gene1377 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1386 YPO1387 YPO1387 YPO1387 1565168 1566262 + putative exported protein Similar to Yersinia enterocolitica invasin precursor YadA SW:YADA_YEREN (P31489) (455 aa) fasta scores: E(): 6.6e-17%2C 30.7%25 id in 368 aa%2C and to Yersinia pseudotuberculosis invasin precursor YadA SW:YADA_YERPS (P10858) (434 aa) fasta scores: E(): 5.9e-11%2C 28.3%25 id in 357 aa gene gene1378 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1387 YPO1388 YPO1388 YPO1388 1566262 1568130 + putative exported protein C-terminal region of the CDS is similar to Yersinia enterocolitica invasin precursor YadA SW:YADA_YEREN (P31489) (455 aa) fasta scores: E(): 3.5e-10%2C 26.8%25 id in 355 aa. Internal region of the CDS is similar to the N-terminus Yersinia pestis putative autotransporter protein YapD TR:CAC14223 (EMBL:AJ277627) (1457 aa) fasta scores: E(): 8.8e-06%2C 23.6%25 id in 559 aa gene gene1379 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1388 YPO1389 YPO1389 serC serC 1568497 1569582 + phosphoserine aminotransferase Similar to Yersinia enterocolitica phosphoserine aminotransferase SerC SW:SERC_YEREN (P19689) (361 aa) fasta scores: E(): 0%2C 93.9%25 id in 361 aa%2C and to Escherichia coli phosphoserine aminotransferase SerC SW:SERC_ECOLI (P23721) (361 aa) fasta scores: E(): 0%2C 76.1%25 id in 360 aa gene gene1380 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1389 YPO1390 YPO1390 aroA aroA 1569745 1571031 + 3-phosphoshikimate 1-carboxyvinyltransferase Previously sequenced as Yersinia pestis 3-phosphoshikimate 1-carboxyvinyltransferase AroA SW:AROA_YERPE (Q60112) (424 aa) fasta scores: E(): 0%2C100.0%25 id in 423 aa. Similar to Yersinia enterocolitica 3-phosphoshikimate 1-carboxyvinyltransferase AroA SW:AROA_YEREN (P19688) (427 aa) fasta scores: E(): 0%2C 91.1%25 id in 428 aa gene gene1381 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1390 YPO1391 YPO1391 cmk cmk 1571344 1572036 + cytidylate kinase Similar to Escherichia coli cytidylate kinase Cmk SW:KCY_ECOLI (P23863) (227 aa) fasta scores: E(): 0%2C 84.5%25 id in 226 aa%2C and to Vibrio cholerae cytidylate kinase VC1916 TR:Q9KQT2 (EMBL:AE004267) (229 aa) fasta scores: E(): 0%2C 67.0%25 id in 224 aa gene gene1382 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1391 YPO1392 YPO1392 rpsA rpsA 1572210 1573883 + 30S ribosomal protein S1 Similar to Escherichia coli 30S ribosomal protein S1 RpsA SW:RS1_ECOLI (P02349) (557 aa) fasta scores: E(): 0%2C95.0%25 id in 558 aa%2C and to Vibrio cholerae ribosomal protein S1 VC1915 TR:Q9KQT3 (EMBL:AE004267) (556 aa) fasta scores: E(): 0%2C 83.5%25 id in 557 aa gene gene1383 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1392 YPO1393 YPO1393 himD himD 1573944 1574228 + integration host factor beta-subunit Similar to Serratia marcescens integration host factor beta-subunit IhfB SW:IHFB_SERMA (P23303) (94 aa) fasta scores: E(): 0%2C 95.7%25 id in 94 aa%2C and to Escherichia coli integration host factor beta-subunit IhfB SW:IHFB_ECOLI (P08756) (94 aa) fasta scores: E(): 0%2C 93.6%25 id in 94 aa gene gene1384 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1393 YPO1394 YPO1394 YPO1394 1574775 1577066 + putative membrane protein Similar to Neisseria gonorrhoeae competence protein ComA SW:COMA_NEIGO (P51973) (691 aa) fasta scores: E(): 1.8e-27%2C 28.9%25 id in 714 aa%2C and to Escherichia coli hypothetical protein YcaI SW:YCAI_ECOLI (P37443) (780 aa) fasta scores: E(): 0%2C 41.9%25 id in 756 aa gene gene1385 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1394 YPO1395 YPO1395 msbA msbA 1577102 1578850 + probable transport ATP-binding protein Similar to Escherichia coli probable transport ATP-binding protein MsbA SW:MSBA_ECOLI (P27299) (582 aa) fasta scores: E(): 0%2C 85.2%25 id in 582 aa%2C and to Vibrio cholerae transport ATP-binding protein MsbA TR:Q9KQW9 (EMBL:AE004263) (582 aa) fasta scores: E(): 0%2C 69.0%25 id in 577 aa gene gene1386 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1395 YPO1396 YPO1396 lpxK lpxK 1578847 1579833 + tetraacyldisaccharide 4'-kinase Similar to Escherichia coli tetraacyldisaccharide 4'-kinase LpxK SW:LPXK_ECOLI (P27300) (328 aa) fasta scores: E(): 0%2C 70.2%25 id in 325 aa%2C and to Vibrio cholerae tetraacyldisaccharide 4`-kinase VC1877 TR:Q9KQX0 (EMBL:AE004263) (336 aa) fasta scores: E(): 0%2C 54.2%25 id in 325 aa gene gene1387 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1396 YPO1397 YPO1397 YPO1397 1579841 1581277 - conserved hypothetical protein Similar to Escherichia coli hypothetical protein YdcJ TR:P76097 (EMBL:AE000239) (447 aa) fasta scores: E(): 0%2C 54.3%25 id in 464 aa%2C and to Mycobacterium tuberculosis hypothetical protein rv3292 RV3292 TR:P96897 (EMBL:Z92771) (415 aa) fasta scores: E(): 0%2C 34.3%25 id in 472 aa. The CDS contains extra internal amino acid residues%2C relative to the Mycobacterium tuberculosis protein%2C in the degenerate repeat (5x IQE) region gene gene1388 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1397 YPO1398 YPO1398 cspB cspB 1581996 1582205 + cold shock-like protein Similar to Yersinia enterocolitica cold shock-like protein CspB SW:CSPB_YEREN (O85593) (70 aa) fasta scores: E(): 3e-12%2C 51.4%25 id in 70 aa%2C and to Escherichia coli cold shock-like protein CspE SW:CSPE_ECOLI (P36997) (68 aa) fasta scores: E(): 4.2e-12%2C 54.7%25 id in 64 aa gene gene1389 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1398 YPO1399 YPO1399 YPO1399 1582753 1582935 + conserved hypothetical protein Similar to Escherichia coli protein YcaR SW:YCAR_ECOLI (P75844) (60 aa) fasta scores: E(): 1.7e-19%2C71.7%25 id in 60 aa%2C and to Vibrio cholerae hypothetical protein VC1876 TR:Q9KQX1 (EMBL:AE004263) (59 aa) fasta scores: E(): 1.5e-17%2C 70.2%25 id in 57 aa gene gene1390 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1399 YPO1400 YPO1400 kdsB kdsB 1582932 1583684 + putative 3-deoxy-manno-octulosonate cytidylyltransferase Similar to Escherichia coli 3-deoxy-manno-octulosonate cytidylyltransferase KdsB SW:KDSB_ECOLI (P04951) (247 aa) fasta scores: E(): 0%2C 77.6%25 id in 246 aa%2C and to Vibrio cholerae 3-deoxy-manno-octulosonate cytidylyltransferase VC1875 TR:Q9KQX2 (EMBL:AE004263) (252 aa) fasta scores: E(): 0%2C67.6%25 id in 247 aa gene gene1391 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1400 YPO1401 YPO1401 YPO1401 1584047 1584940 + conserved hypothetical protein C-terminal region is similar to the C-terminus of Homo sapiens fructosamine-3-kinase FN3K TR:CAC16393 (EMBL:AJ404615) (309 aa) fasta scores: E(): 0.038%2C 22.0%25 id in 205 aa. Full length CDS is similar to Escherichia coli hypothetical protein YcbJ TR:P75845 (EMBL:AE000194) (297 aa) fasta scores: E(): 0%2C 54.5%25 id in 297 aa gene gene1392 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1401 YPO1402 YPO1402 smtA smtA 1585713 1586498 + putative methyltransferase Some similarity to an internal region of Escherichia coli 3-demethylubiquinone-9 3-methyltransferase UbiG SW:UBIG_ECOLI (P17993) (240 aa) fasta scores: E(): 8.5e-06%2C27.0%25 id in 163 aa. Full length CDS is similar to Escherichia coli possible S-adenosylmethionine-dependent methyltransferase SmtA SW:SMTA_ECOLI (P36566) (261 aa) fasta scores: E(): 0%2C 64.5%25 id in 259 aa gene gene1393 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1402 YPO1403 YPO1403 kicB kicB 1586495 1587817 + putative killing factor protein Similar to Escherichia coli killing factor protein%2Ccausing inhibition of protein biosynthesis and killing of cells%2C MukF SW:MUKF_ECOLI (P36567) (440 aa) fasta scores: E(): 0%2C 84.8%25 id in 440 aa%2C and to Haemophilus influenzae MukF protein homolog HI1372 SW:MUKF_HAEIN (P45185) (475 aa) fasta scores: E(): 0%2C 64.6%25 id in 444 aa gene gene1394 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1403 YPO1404 YPO1404 kicA kicA 1587825 1588526 + conserved hypothetical protein Similar to Escherichia coli hypothetical protein MukE SW:MUKE_ECOLI (P22524) (225 aa) fasta scores: E(): 0%2C81.8%25 id in 231 aa%2C and to Haemophilus influenzae hypothetical protein HI1373 SW:MUKE_HAEIN (P45186) (243 aa) fasta scores: E(): 0%2C 67.1%25 id in 234 aa gene gene1395 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1404 YPO1405 YPO1405 mukB mukB 1588523 1592980 + cell division protein Similar to Escherichia coli cell division protein MukB SW:MUKB_ECOLI (P22523) (1486 aa) fasta scores: E(): 0%2C81.1%25 id in 1476 aa%2C and to Haemophilus influenzae cell division protein MukB homolog HI1374 SW:MUKB_HAEIN (P45187) (1510 aa) fasta scores: E(): 0%2C 64.6%25 id in 1467 aa. Contains various coiled-coil domains at approx. residues 344..415%2C 564..589%2C 844..868%2C 989..1033%2C 1078..1105 gene gene1396 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1405 YPO1406 YPO1406 tnp tnp 1593196 1593654 + transposase for the IS1541 insertion element Similar to Salmonella typhimurium and Salmonella typhi transposase for insertion sequence IS200%2C TnpA%2CSW:TNPA_SALTY (Q57334) (152 aa) fasta scores: E(): 0%2C 93.4%25 id in 152 aa. Almost identical to the Yersinia pseudotuberculosis IS1541-like element transposase Tnp TR:Q9X9F5 (EMBL:AJ238014) (152 aa) fasta scores: E(): 0%2C99.3%25 id in 152 aa gene gene1397 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1406 YPO1407 YPO1407 YPO1407 1593938 1595794 + putative exported protein C-terminal region is similar to the C-terminus of Haemophilus influenzae hypothetical protein HI1667 SW:YCBB_HAEIN (P44285) (489 aa) fasta scores: E(): 0%2C 53.1%25 id in 243 aa%2C and Vibrio cholerae hypothetical protein VC1268 TR:Q9KSI8 (EMBL:AE004206) (524 aa) fasta scores: E(): 0%2C 32.0%25 id in 543 aa gene gene1398 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1407 YPO1408 YPO1408 YPO1408 1596018 1596566 + putative exported protein Similar to Escherichia coli hypothetical 20.4 kDa protein YcbK SW:YCBK_ECOLI (P75848) (182 aa) fasta scores: E(): 0%2C 81.9%25 id in 182 aa%2C and to Vibrio cholerae hypothetical protein VC1269 TR:Q9KSI7 (EMBL:AE004206) (182 aa) fasta scores: E(): 0%2C 50.8%25 id in 181 aa gene gene1399 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1408 YPO1409 YPO1409 YPO1409 1596627 1597274 + metallo-beta-lactamase superfamily protein Similar to Escherichia coli hypothetical protein YcbL SW:YCBL_ECOLI (P75849) (215 aa) fasta scores: E(): 0%2C70.7%25 id in 215 aa%2C and to Vibrio cholerae glyoxalase II family protein VC1270 TR:Q9KSI6 (EMBL:AE004206) (218 aa) fasta scores: E(): 0%2C 51.9%25 id in 212 aa gene gene1400 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1409 YPO1410 YPO1410 aspC aspC 1597698 1598888 - aspartate aminotransferase Similar to Escherichia coli aspartate aminotransferase AspC SW:AAT_ECOLI (P00509) (396 aa) fasta scores: E(): 0%2C 86.1%25 id in 396 aa%2C and to Aeromonas hydrophila aspartate amino-transferase AspC TR:Q9RNA0 (EMBL:AF183931) (396 aa) fasta scores: E(): 0%2C 64.1%25 id in 396 aa gene gene1401 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1410 YPO1411 YPO1411 ompF ompF 1599145 1600321 - mRNA gene1402 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1411 YPO1412 YPO1412 asnS asnS 1600525 1601925 - asparaginyl-tRNA synthetase Similar to Escherichia coli asparaginyl-tRNA synthetase AsnS SW:SYN_ECOLI (P17242) (465 aa) fasta scores: E(): 0%2C 87.3%25 id in 465 aa%2C and to Haemophilus influenzae asparaginyl-tRNA synthetase AsnS SW:SYN_HAEIN (P43829) (477 aa) fasta scores: E(): 0%2C 79.5%25 id in 464 aa gene gene1403 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1412 YPO1413 YPO1413 pncB pncB 1602424 1603629 - putative nicotinate phosphoribosyltransferase Similar to Escherichia coli nicotinate phosphoribosyltransferase PncB SW:PNCB_ECOLI (P18133) (399 aa) fasta scores: E(): 0%2C 73.5%25 id in 400 aa%2C and to Salmonella typhimurium nicotinate phosphoribosyltransferase PncB SW:PNCB_SALTY (P22253) (399 aa) fasta scores: E(): 0%2C72.5%25 id in 400 aa gene gene1404 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1413 YPO1414 YPO1414 pepN pepN 1604345 1606960 + putative aminopeptidase N Similar to Escherichia coli aminopeptidase N PepN SW:AMPN_ECOLI (P04825) (869 aa) fasta scores: E(): 0%2C 77.2%25 id in 869 aa%2C and to Vibrio cholerae aminopeptidase N VC1494 TR:Q9KRY9 (EMBL:AE004227) (868 aa) fasta scores: E(): 0%2C 65.1%25 id in 871 aa gene gene1405 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1414 YPO1415 YPO1415 pyrD pyrD 1607578 1608588 + dihydroorotate dehydrogenase Similar to Escherichia coli dihydroorotate dehydrogenase PyrD SW:PYRD_ECOLI (P05021) (336 aa) fasta scores: E(): 0%2C 83.6%25 id in 336 aa%2C and to Salmonella typhimurium dihydroorotate dehydrogenase PyrD SW:PYRD_SALTY (P25468) (336 aa) fasta scores: E(): 0%2C 83.6%25 id in 336 aa gene gene1406 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1415 YPO1416 YPO1416 YPO1416 1608771 1609322 + conserved hypothetical protein Similar to Escherichia coli hypothetical protein YcbW SW:YCBW_ECOLI (P75862) (192 aa) fasta scores: E(): 0%2C66.5%25 id in 167 aa%2C and to Vibrio cholerae hypothetical protein VC1490 TR:Q9KRZ3 (EMBL:AE004227) (180 aa) fasta scores: E(): 1.1e-17%2C 38.1%25 id in 168 aa gene gene1407 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1416 YPO1417 YPO1417 YPO1417 1609348 1610460 - putative iron-sulfur binding protein Similar to Escherichia coli hypothetical protein RfbI TR:P75863 (EMBL:AE000196) (369 aa) fasta scores: E(): 3.1e-107%2C 69.126%25 id in 366 aa%2C and to Vibrio cholerae hypothetical protein VCA0924 TR:Q9KL25 (EMBL:AE004419) (662 aa) fasta scores: E(): 1.2e-44%2C 46.642%25 id in 268 aa gene gene1408 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1417 YPO1418 YPO1418 YPO1418 1610560 1612680 + conserved hypothetical protein Similar to Escherichia coli hypothetical protein YcbY SW:YCBY_ECOLI (P75864) (702 aa) fasta scores: E(): 0%2C75.4%25 id in 700 aa%2C and to Vibrio cholerae hypothetical protein VC1488 TR:Q9KRZ5 (EMBL:AE004226) (708 aa) fasta scores: E(): 0%2C 56.2%25 id in 707 aa gene gene1409 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1418 YPO1419 YPO1419 uup uup 1612686 1614599 + ABC transporter ATP-binding protein Similar to Escherichia coli ABC transporter ATP-binding protein Uup SW:UUP_ECOLI (P43672) (635 aa) fasta scores: E(): 0%2C 77.4%25 id in 637 aa%2C and to Haemophilus influenzae ABC transporter ATP-binding protein Uup-1 SW:UUP1_HAEIN (Q57242) (647 aa) fasta scores: E(): 0%2C66.3%25 id in 641 aa gene gene1410 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1419 YPO1420 YPO1420 pqiA pqiA 1614728 1616014 + putative paraquat-inducible protein A Similar to Escherichia coli paraquat-inducible protein A PqiA SW:PQIA_ECOLI (P43670) (417 aa) fasta scores: E(): 0%2C 70.4%25 id in 406 aa%2C and to Vibrio cholerae paraquat-inducible protein A VC1753 TR:Q9KR89 (EMBL:AE004252) (434 aa) fasta scores: E(): 0%2C 39.1%25 id in 419 aa gene gene1411 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1420 YPO1421 YPO1421 pqiB pqiB 1616028 1617653 + putative paraquat-inducible protein B Similar to Escherichia coli paraquat-inducible protein B PqiB SW:PQIB_ECOLI (P43671) (546 aa) fasta scores: E(): 0%2C 69.4%25 id in 540 aa%2C and to Vibrio cholerae paraquat-inducible protein B VC1754 TR:Q9KR88 (EMBL:AE004252) (547 aa) fasta scores: E(): 0%2C 43.2%25 id in 542 aa gene gene1412 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1421 YPO1422 YPO1422 YPO1422 1617650 1618228 + putative lipoprotein protein Similar to Escherichia coli hypothetical protein YmbA SW:YMBA_ECOLI (P75866) (182 aa) fasta scores: E(): 0%2C58.4%25 id in 185 aa%2C and to Vibrio cholerae hypothetical protein VC1755 TR:Q9KR87 (EMBL:AE004252) (192 aa) fasta scores: E(): 1.1e-10%2C 29.6%25 id in 196 aa gene gene1413 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1422 YPO1423 YPO1423 YPO1423 1618277 1618417 + hypothetical protein No significant database hits gene gene1414 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1423 YPO1423a YPO1423a rmf rmf 1618498 1618665 + putative ribosome modulation factor Similar to Escherichia coli ribosome modulation factor Rmf SW:RMF_ECOLI (P22986) (55 aa) fasta scores: E(): 2.5e-17%2C 76.364%25 id in 55 aa%2C and to Vibrio cholerae ribosome modulation factor VC1484 TR:Q9KRZ9 (EMBL:AE004226) (57 aa) fasta scores: E(): 1.7e-13%2C 66.667%25 id in 51 aa gene gene1415 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1423a YPO1424 YPO1424 tnp tnp 1618863 1619321 + transposase for the IS1541 insertion element Similar to Salmonella typhimurium%2C and Salmonella typhi transposase for insertion sequence IS200 TnpA SW:T200_SALTY (Q57334) (152 aa) fasta scores: E(): 0%2C 94.1%25 id in 152 aa. Identical to the Yersinia pseudotuberculosis IS1541-like element transposase Tnp TR:Q9X9F5 (EMBL:AJ238014) (152 aa) fasta scores: E(): 0%2C 100.0%25 id in 152 aa gene gene1416 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1424 YPO1426 YPO1426 ypmt1.57c ypmt1.57c 1620482 1621264 - insertion sequence IS100%2C ATP-binding protein Similar to Escherichia coli insertion sequence IS21 putative ATP-binding protein%2C IstB SW:ISTB_ECOLI (P15026) (265 aa) fasta scores: E(): 0%2C 47.4%25 id in 249 aa. Also almost identical to Yersinia pestis and Escherichia coli putative IS100 transposase ypmt1.57c TR:Q9R3L5 (EMBL:AL117211) (260 aa) fasta scores: E(): 0%2C 99.6%25 id in 260 aa. gene gene1418 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1426 YPO1427 YPO1427 y1093 y1093 1621261 1622283 - transposase for insertion sequence IS100 Similar to Escherichia coli transposase for insertion sequence element IS21 IstA SW:ISTA_ECOLI (P15025) (390 aa) fasta scores: E(): 3e-27%2C 33.1%25 id in 329 aa. Identical to the previously sequenced Yersinia pestis%2CYersinia pseudotuberculosis%2C and Escherichia coli pesticin plasmid insertion sequence transposase Y1055 TR:P74993 (EMBL:U59875) (340 aa) fasta scores: E(): 0%2C 100.0%25 id in 340 aa gene gene1419 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1427 YPO1428 YPO1428 YPO1428 1619438 1620412 - putative 3-oxoacyl-[acyl-carrier-protein] synthase II (pseudogene) CDS is disrupted by the insertion of an IS100 element after codon 100. The full length CDS is similar to Escherichia coli 3-oxoacyl-[acyl-carrier-protein] synthase II FabF SW:FABF_ECOLI (P39435) (412 aa) fasta scores: E(): 9.5e-62%2C 46.445%25 id in 422 aa%2C and to Rhizobium meliloti 3-oxoacyl-[acyl-carrier-protein] synthase II TR:AAF24182 (EMBL:AF159244) (421 aa) fasta scores: E(): 5.3e-84%2C51.905%25 id in 420 aa%2C and to Pseudomonas aeruginosa 3-oxoacyl-acyl carrier protein synthase II FabF2 TR:Q9I3X1 (EMBL:AE004567) (422 aa) fasta scores: E(): 3.3e-122%2C71.868%25 id in 423 aa pseudogene gene1417 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1428 YPO1429 YPO1429 YPO1429 1622917 1623105 + putative membrane protein Doubtful CDS. No significant database matches gene gene1420 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1429 YPO1430 YPO1430 fabA fabA 1623371 1623889 - 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase Similar to Escherichia coli 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase FabA SW:FABA_ECOLI (P18391) (171 aa) fasta scores: E(): 0%2C 87.1%25 id in 171 aa%2C and to Haemophilus influenzae 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase FabA SW:FABA_HAEIN (P45159) (177 aa) fasta scores: E(): 0%2C 76.6%25 id in 171 aa gene gene1421 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1430 YPO1431 YPO1431 YPO1431 1623958 1625730 - putative Lon protease Similar to Vibrio parahaemolyticus ATP-dependent protease Lon SW:LON_VIBPA (P74956) (783 aa) fasta scores: E(): 0.004%2C 33.3%25 id in 117 aa%2C and to Escherichia coli putative Lon protease homologue YcbZ SW:LONH_ECOLI (P75867) (586 aa) fasta scores: E(): 0%2C 57.9%25 id in 584 aa gene gene1422 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1431 YPO1433 YPO1433 YPO1433 1625920 1626375 + conserved hypothetical protein Similar to Escherichia coli hypothetical protein YcbG SW:YCBG_ECOLI (P45569) (150 aa) fasta scores: E(): 0%2C80.0%25 id in 150 aa%2C and to Vibrio cholerae hypothetical protein VC1481 TR:Q9KS02 (EMBL:AE004226) (169 aa) fasta scores: E(): 3.1e-29%2C 52.4%25 id in 147 aa gene gene1423 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1433 YPO1434 YPO1434 tnp tnp 1626544 1627002 - transposase for the IS1541 insertion element Similar to Salmonella typhimurium%2C and Salmonella typhi transposase for insertion sequence IS200 TnpA SW:T200_SALTY (Q57334) (152 aa) fasta scores: E(): 0%2C 94.1%25 id in 152 aa. Identical to the Yersinia pseudotuberculosis IS1541-like element transposase Tnp TR:Q9X9F5 (EMBL:AJ238014) (152 aa) fasta scores: E(): 0%2C 100.0%25 id in 152 aa gene gene1424 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1434 YPO1435 YPO1435 con con 1627192 1628253 - putative outer membrane porin A protein Similar to Escherichia coli outer membrane protein A precursor OmpA SW:OMPA_ECOLI (P02934) (346 aa) fasta scores: E(): 3.1e-103%2C 75.921%25 id in 353 aa%2C and to Salmonella typhimurium outer membrane protein A precursor OmpA SW:OMPA_SALTY (P02936) (350 aa) fasta scores: E(): 1.4e-104%2C 76.771%25 id in 353 aa gene gene1425 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1435 YPO1436 YPO1436 sfiA sfiA 1628611 1629117 - putative cell division inhibitor Similar to Escherichia coli cell division inhibitor SulA SW:SULA_ECOLI (P08846) (169 aa) fasta scores: E(): 5.1e-31%2C 60.6%25 id in 142 aa%2C and to Serratia marcescens cell division inhibitor SulA SW:SULA_SERMA (P08845) (168 aa) fasta scores: E(): 0%2C 67.9%25 id in 168 aa gene gene1426 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1436 YPO1437 YPO1437 YPO1437 1629346 1629981 + conserved hypothetical protein Similar to Haemophilus influenzae DNA transformation protein TfoX SW:TFOX_HAEIN (P43779) (217 aa) fasta scores: E(): 5.5e-05%2C 27.9%25 id in 183 aa%2C and to Escherichia coli hypothetical protein YccR SW:YCCR_ECOLI (P75869) (209 aa) fasta scores: E(): 4.2e-27%2C 44.6%25 id in 195 aa. TfoX may play a key role in the development of genetic competence by regulating the expression of late competence-specific genes in Haemophilus influenzae gene gene1427 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1437 YPO1438 YPO1438 YPO1438 1630083 1632221 - putative membrane protein Similar to Escherichia coli hypothetical protein YccS SW:YCCS_ECOLI (P75870) (720 aa) fasta scores: E(): 0%2C69.7%25 id in 710 aa%2C and to Vibrio cholerae hypothetical protein VCA0718 TR:Q9KLM5 (EMBL:AE004401) (725 aa) fasta scores: E(): 0%2C 45.7%25 id in 715 aa gene gene1428 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1438 YPO1439 YPO1439 YPO1439 1632251 1632697 - putative membrane protein Similar to Escherichia coli hypothetical protein YccF SW:YCCF_ECOLI (P37065) (148 aa) fasta scores: E(): 0%2C78.1%25 id in 146 aa%2C and to Vibrio cholerae hypothetical protein VCA1051 TR:Q9KKQ1 (EMBL:AE004430) (143 aa) fasta scores: E(): 1.5e-18%2C 39.6%25 id in 139 aa gene gene1429 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1439 YPO1440 YPO1440 YPO1440 1632891 1634876 + putative helicase IV Similar to Escherichia coli helicase IV HelD SW:HELD_ECOLI (P15038) (684 aa) fasta scores: E(): 0%2C 66.7%25 id in 684 aa%2C and to Vibrio cholerae helicase IV VCA0717 TR:Q9KLM6 (EMBL:AE004401) (699 aa) fasta scores: E(): 0%2C37.2%25 id in 682 aa. CDS contains an internal deletion or deletions%2C around codon 320%2C relative to the E. coli and V. cholerae proteins gene gene1430 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1440 YPO1441 YPO1441 mgsA mgsA 1634937 1635401 - methylglyoxal synthase Similar to Escherichia coli methylglyoxal synthase MgsA SW:MGSA_ECOLI (P37066) (152 aa) fasta scores: E(): 0%2C73.5%25 id in 151 aa%2C and to Vibrio cholerae methylglyoxal synthase VCA0711 TR:Q9KLN2 (EMBL:AE004400) (151 aa) fasta scores: E(): 0%2C 66.0%25 id in 150 aa gene gene1431 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1441 YPO1442 YPO1442 YPO1442 1635580 1636260 - putative exported protein Similar to Escherichia coli hypothetical protein YccT SW:YCCT_ECOLI (P75873) (220 aa) fasta scores: E(): 3e-24%2C 36.7%25 id in 226 aa%2C and to Haemophilus influenzae hypothetical protein HI1681 SW:YG81_HAEIN (P44290) (221 aa) fasta scores: E(): 1.3e-17%2C 33.3%25 id in 225 aa gene gene1432 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1442 YPO1443 YPO1443 YPO1443 1636576 1636992 + conserved hypothetical protein Similar to Escherichia coli hypothetical protein B0965 TR:P75874 (EMBL:AE000198) (164 aa) fasta scores: E(): 0%2C 70.8%25 id in 137 aa%2C and to Pyrococcus horikoshii hypothetical protein PH1109 TR:O58836 (EMBL:AP000005) (144 aa) fasta scores: E(): 4.5e-17%2C 44.5%25 id in 137 aa. CDS appears to be truncated at the N-terminus in comparison to E. coli protein gene gene1433 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1443 YPO1444 YPO1444 YPO1444 1637101 1637442 - conserved hypothetical protein Similar to Escherichia coli hypothetical protein YccV SW:YCCV_ECOLI (P75875) (122 aa) fasta scores: E(): 0%2C76.1%25 id in 113 aa%2C and to the N-terminal region of Mycobacterium tuberculosis hypothetical protein RV1155 TR:O06553 (EMBL:Z95584) (147 aa) fasta scores: E(): 9.7%2C24.3%25 id in 103 aa. CDS appears to be truncated at the N-terminus in comparison to E. coli protein gene gene1434 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1444 YPO1445 YPO1445 YPO1445 1637479 1638669 - conserved hypothetical protein Similar to Escherichia coli hypothetical protein YccW TR:Q9R7Q2 (EMBL:AE000198) (396 aa) fasta scores: E(): 0%2C 80.6%25 id in 396 aa%2C and to Vibrio cholerae hypothetical protein VC1354 TR:Q9KSA5 (EMBL:AE004215) (418 aa) fasta scores: E(): 0%2C 62.3%25 id in 398 aa gene gene1435 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1445 YPO1446 YPO1446 YPO1446 1638763 1639041 + putative acylphosphatase Similar to Cavia porcellus skeletal muscle acylphosphatase AcyP SW:ACYM_CAVPO (P35744) (98 aa) fasta scores: E(): 1.2e-05%2C 34.9%25 id in 86 aa%2C and to Escherichia coli putative acylphosphatase YccX SW:ACYP_ECOLI (P75877) (92 aa) fasta scores: E(): 5.3e-21%2C 62.0%25 id in 92 aa gene gene1436 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1446 YPO1447 YPO1447 YPO1447 1639093 1639419 - putative sulfite reductase subunit protein Similar to Archaeoglobus fulgidus sulfite reductase%2Cdesulfoviridin-type subunit gamma protein AF2228 TR:O28055 (EMBL:AE000951) (115 aa) fasta scores: E(): 7.2e-16%2C 39.8%25 id in 113 aa%2C and to Escherichia coli hypothetical protein YccK SW:YCCK_ECOLI (P45572) (109 aa) fasta scores: E(): 0%2C80.6%25 id in 108 aa gene gene1437 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1447 YPO1448 YPO1448 tnpA tnpA 1639931 1640457 + transposase (partial) Similar to Erwinia herbicola IS1327 transposase TnpA TR:P94785 (EMBL:X87144) (234 aa) fasta scores: E(): 0%2C67.5%25 id in 169 aa%2C and to Yersinia pseudotuberculosis transposase Tnp TR:AAG45432 (EMBL:AF324349) (106 aa) fasta scores: E(): 0%2C 97.0%25 id in 99 aa. Contains a frameshift after codon 76 and is truncated at the C-terminus. Probable gene remnant%3B~was marked partial mRNA gene1438 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1448 YPO1449 YPO1449 cnf cnf 1640827 1642940 + cytotoxic necrotizing factor (partial) Similar to C-terminal regions of Escherichia coli cytotoxic necrotizing factor type 2 Cnf2 TR:Q47107 (EMBL:U01097) (1014 aa) fasta scores: E(): 0%2C 61.8%25 id in 706 aa%2C and Yersinia pseudotuberculosis cytotoxic necrotizing factor Cnf TR:AAG45433 (EMBL:AF324349) (1014 aa) fasta scores: E(): 0%2C 97.0%25 id in 704 aa. CDS contains nonsense and frameshift mutations%2C and appears to be truncated at the C-terminus. Probable gene remnant%3B~was marked partial mRNA gene1439 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1449 YPO1451 YPO1451 YPO1451 1643068 1645485 - putative oxidoreductase C-terminal region similar to similar to Arthrobacter oxidans 6-hydroxy-D-nicotine oxidase SW:HDNO_ARTOX (P08159) (458 aa) fasta scores: E(): 1.7e-20%2C 27.5%25 id in 466 aa%2Cand Mycobacterium tuberculosis probable oxidoreductase MTCY25C11.01 TR:O33177 (EMBL:Z97345) (446 aa) fasta scores: E(): 0%2C 32.5%25 id in 424 aa. Possible alternative translational start sites gene gene1440 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1451 YPO1452 YPO1452 YPO1452 1645639 1646385 - putative short chain dehydrogenase Similar to Pseudomonas paucimobilis 2%2C5-dichloro-2%2C5-cyclohexadiene-1%2C4-diol dehydrogenase LinC SW:LINC_PSEPA (P50197) (250 aa) fasta scores: E(): 4.8e-27%2C37.0%25 id in 246 aa%2C and to Acinetobacter sp SE19 cyclohexanol dehydrogenase ChnA TR:AAG10026 (EMBL:AF282240) (251 aa) fasta scores: E(): 1.8e-26%2C 33.3%25 id in 246 aa gene gene1441 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1452 YPO1453 YPO1453 YPO1453 1647014 1647334 + hypothetical protein No significant database hits gene gene1442 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1453 YPO1454 YPO1454 YPO1454 1647664 1648122 + putative (3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydrase Similar to Streptococcus agalactiae putative hemolysin production protein CylZ TR:Q9X431 (EMBL:AF093787) (131 aa) fasta scores: E(): 1.9e-08%2C 33.8%25 id in 130 aa. N-terminus is similar to N-terminal region of Escherichia coli (3R)-hydroxymyristoyl [acyl carrier protein] dehydrase FabZ SW:FABZ_ECOLI (P21774) (151 aa) fasta scores: E(): 6.9e-08%2C 45.6%25 id in 68 aa gene gene1443 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1454 YPO1455 YPO1455 YPO1455 1648112 1649395 + putative beta-ketoacyl-[acyl-carrier-protein] synthase Similar to Hordeum vulgare beta-ketoacyl-ACP synthase TR:Q40028 (EMBL:Z34269) (489 aa) fasta scores: E(): 9.6e-33%2C 32.5%25 id in 434 aa%2C and to Cuphea wrightii beta-ketoacyl-ACP synthase II TR:P93117 (EMBL:U67316) (517 aa) fasta scores: E(): 2.1e-32%2C 33.6%25 id in 425 aa gene gene1444 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1455 YPO1456 YPO1456 YPO1456 1649388 1650134 + putative beta-ketoacyl-[acyl-carrier-protein] reductase Similar to Escherichia coli 3-oxoacyl-[acyl-carrier protein] reductase FabG SW:FABG_ECOLI (P25716) (244 aa) fasta scores: E(): 1.9e-25%2C 34.7%25 id in 245 aa%2C and to Streptomyces antibioticus putative 3-oxoacyl-[ACP]-reductase%2C involved in aminocoumarin biosynthesis TR:AAG34189 (EMBL:AF321122) (246 aa) fasta scores: E(): 3.1e-26%2C 38.3%25 id in 240 aa gene gene1445 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1456 YPO1457 YPO1457 YPO1457 1650150 1651388 + putative hydroxymethylglutaryl-coenzyme A synthase Similar to Streptococcus pneumoniae HMG-CoA synthase MvaS TR:AAG02453 (EMBL:AF290098) (398 aa) fasta scores: E(): 1.7e-22%2C 33.8%25 id in 391 aa%2C and to Myxococcus xanthus polyketide antibiotic TA post-modification protein Tac TR:Q9XB06 (EMBL:AJ132503) (420 aa) fasta scores: E(): 2.1e-31%2C 34.0%25 id in 424 aa gene gene1446 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1457 YPO1458 YPO1458 YPO1458 1651381 1652100 + putative enoyl-CoA hydratase Similar to Homo sapiens mitochondria enoyl-CoA hydratase ECHS1 SW:ECHM_HUMAN (P30084) (290 aa) fasta scores: E(): 1.2e-07%2C 27.8%25 id in 198 aa%2C and to Amycolatopsis orientalis putative vancomycin biosynthesis protein PCZA361.9 TR:O52797 (EMBL:AJ223998) (267 aa) fasta scores: E(): 1.8e-08%2C 27.2%25 id in 235 aa gene gene1447 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1458 YPO1459 YPO1459 YPO1459 1652093 1652854 + putative enoyl-CoA hydratase Similar to an internal region of Rattus norvegicus mitochondrial enoyl-CoA hydratase ECHS1 SW:ECHM_RAT (P14604) (290 aa) fasta scores: E(): 1.5e-13%2C 25.2%25 id in 238 aa%2C and to Bacillus subtilis putative polyketide biosynthesis enoyl-CoA hydratase homolog PksI SW:PKSI_BACSU (P40802) (249 aa) fasta scores: E(): 7.3e-24%2C 33.5%25 id in 248 aa gene gene1448 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1459 YPO1460 YPO1460 YPO1460 1652857 1653645 + putative short chain dehydrogenase Similar to Spodoptera littoralis 3-dehydroecdysone 3alpha-reductase TR:Q9NBB5 (EMBL:AF255341) (249 aa) fasta scores: E(): 4.6e-09%2C 28.4%25 id in 243 aa%2C and to Thermoplasma acidophilum 3-ketoacyl-acyl carrier protein reductase related protein TA0251 TR:CAC11396 (EMBL:AL445063) (255 aa) fasta scores: E(): 3.1e-11%2C 28.3%25 id in 269 aa gene gene1449 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1460 YPO1461 YPO1461 YPO1461 1653684 1654172 + hypothetical protein Poor database matches%2C similar to Caenorhabditis elegans hypothetical protein T08D2.1 TR:Q9XTX6 (EMBL:Z92839) (167 aa) fasta scores: E(): 6.2%2C 24.3%25 id in 148 aa gene gene1450 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1461 YPO1462 YPO1462 YPO1462 1654210 1654458 + putative acyl carrier protein Similar to Escherichia coli acyl carrier protein AcpP SW:ACP_ECOLI (P02901) (77 aa) fasta scores: E(): 0.12%2C33.3%25 id in 63 aa%2C and to Vibrio marinus acyl carrier protein AcpP TR:Q9RA32 (EMBL:AB021978) (78 aa) fasta scores: E(): 0.0026%2C 38.4%25 id in 73 aa gene gene1451 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1462 YPO1463 YPO1463 YPO1463 1654557 1655405 + putative acyl transferase Similar to Bacillus subtilis malonyl CoA-acyl carrier protein transacylase FabD SW:FABD_BACSU (P71019) (317 aa) fasta scores: E(): 4.5e-28%2C 36.2%25 id in 290 aa%2Cand to Bacillus subtilis putative polyketide synthesis protein PksC TR:O34825 (EMBL:Z99112) (288 aa) fasta scores: E(): 0%2C 45.1%25 id in 275 aa gene gene1452 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1463 YPO1464 YPO1464 YPO1464 1655562 1655729 + hypothetical protein No significant database hits gene gene1453 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1464 YPO1465 YPO1465 YPO1465 1656394 1656894 + conserved hypothetical protein Similar to Pseudomonas aeruginosa hypothetical protein PA1657 TR:AAG05046 (EMBL:AE004593) (168 aa) fasta scores: E(): 1.3e-18%2C 39.2%25 id in 158 aa%2C and to Vibrio cholerae hypothetical protein VCA0107 TR:Q9KN58 (EMBL:AE004353) (168 aa) fasta scores: E(): 2.7e-18%2C 41.0%25 id in 156 aa. Highly similar to YPO0978 (97.6%25 identity in 166 aa overlap) gene gene1454 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1465 YPO1466 YPO1466 YPO1466 1656937 1658487 + conserved hypothetical protein Similar to Vibrio cholerae hypothetical protein VCA0108 TR:Q9KN57 (EMBL:AE004353) (492 aa) fasta scores: E(): 0%2C 43.9%25 id in 488 aa%2C and to Pseudomonas aeruginosa hypothetical protein PA1658 TR:AAG05047 (EMBL:AE004593) (491 aa) fasta scores: E(): 0%2C 44.0%25 id in 450 aa. CDS contains sequence divergence at the N-terminus. Highly similar to YPO0977 (98.8%25 identity in 516 aa overlap) gene gene1455 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1466 YPO1467 YPO1467 YPO1467 1658499 1659851 + conserved hypothetical protein Similar to Vibrio cholerae hypothetical protein VCA0114 TR:Q9KN51 (EMBL:AE004353) (444 aa) fasta scores: E(): 4.9e-31%2C 28.4%25 id in 450 aa%2C and to Pseudomonas aeruginosa hypothetical protein PA0079 TR:AAG03469 (EMBL:AE004447) (444 aa) fasta scores: E(): 4.1e-30%2C 28.7%25 id in 449 aa. Highly similar to YPO0976 (98.9%25 identity in 450 aa overlap) gene gene1456 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1467 YPO1468 YPO1468 YPO1468 1659848 1660534 + putative membrane protein Some similarity to Vibrio cholerae hypothetical protein VCA0115 TR:Q9KN50 (EMBL:AE004353) (257 aa) fasta scores: E(): 3.2e-05%2C 25.2%25 id in 206 aa%2C and to Pseudomonas aeruginosa hypothetical protein PA2362 TR:AAG05750 (EMBL:AE004662) (252 aa) fasta scores: E(): 0.016%2C 30.1%25 id in 153 aa. Identical to YPO0975 (100.0%25 identity in 228 aa overlap) gene gene1457 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1468 YPO1469 YPO1469 YPO1469 1660534 1662270 + putative exported protein Internal region of the CDS is similar to the C-terminus of Pseudomonas fluorescens outer membrane protein OprF TR:Q9S4R5 (EMBL:AF117969) (326 aa) fasta scores: E(): 3.6e-09%2C 35.9%25 id in 181 aa%2C and Pseudomonas stutzeri A15 outer membrane protein OprF TR:Q9XCZ6 (EMBL:AF117972) (321 aa) fasta scores: E(): 1.8e-08%2C 33.7%25 id in 205 aa. Very similar to YPO0974 (99.5%25 identity in 578 aa overlap) gene gene1458 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1469 YPO1470 YPO1470 YPO1470 1662274 1662765 + conserved hypothetical protein Similar to Vibrio cholerae secreted hydrophilic protein HcpA TR:P72350 (EMBL:S81006) (172 aa) fasta scores: E(): 4e-18%2C 37.8%25 id in 143 aa%2C and to Pseudomonas aeruginosa secreted protein Hcp TR:AAG04901 (EMBL:AE004939) (172 aa) fasta scores: E(): 1.7e-17%2C 35.5%25 id in 166 aa. CDS does not have an N-terminal signal sequence. Identical to YPO0973 (100.0%25 identity in 163 aa overlap) gene gene1459 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1470 YPO1471 YPO1471 YPO1471 1663153 1665795 + putative ATPase subunit of ATP-dependent protease Similar to Escherichia coli ClpB protein%2C which is thought to form part of a multi-chaperone system supressing protein aggregation%2C SW:CLPB_ECOLI (P03815) (857 aa) fasta scores: E(): 0%2C 39.0%25 identity in 871 aa overlap%2C and to Yersinia enterocolitica Clp protease-associated protein ClpB TR:AAG00524 (EMBL:AF285784) (890 aa) fasta scores: E(): 0%2C 44.0%25 id in 868 aa. Very similar to YPO0971 (95.0%25 identity in 879 aa overlap) gene gene1460 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1471 YPO1472 YPO1472 YPO1472 1665798 1668146 + conserved hypothetical protein Similar to Pseudomonas aeruginosa hypothetical protein PA0095 TR:AAG03485 (EMBL:AE004448) (741 aa) fasta scores: E(): 4.1e-20%2C 23.5%25 id in 771 aa. N-terminal region is similar to the N-terminus of Pseudomonas aeruginosa hypothetical protein PA3486 TR:AAG06874 (EMBL:AE004769) (808 aa) fasta scores: E(): 4.6e-28%2C 29.0%25 id in 531 aa. Very similar to YPO0970 (94.6%25 identity in 782 aa overlap). C-terminal region is similar to YPO0967 (97.2%25 identity in 211 aa overlap) and YPO0962 (94.8%25 identity in 211 aa overlap) gene gene1461 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1472 YPO1473 YPO1473 YPO1473 1668162 1670462 + hypothetical protein No significant database hits. Similar to YPO0966 (83.2%25 identity in 768 aa overlap) and YPO1476 (51.9%25 identity in 567 aa overlap) gene gene1462 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1473 YPO1474 YPO1474 YPO1474 1670459 1671232 + putative exported protein No significant database matches to the full length CDS. Some similarity to an internal region of Methanococcus jannaschii hypothetical protein MJECl28 SW:YZ28_METJA (Q60287) (1272 aa) fasta scores: E(): 1.2%2C 28.1%25 id in 160 aa gene gene1463 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1474 YPO1475 YPO1475 YPO1475 1671386 1671646 + hypothetical protein No significant database hits to the full length CDS. Similar to an internal region of Pseudomonas aeruginosa hypothetical protein PA0262 TR:AAG03651 (EMBL:AE004464) (1019 aa) fasta scores: E(): 0.00017%2C 33.8%25 id in 74 aa. Highly similar to the C-terminal regions of YPO0962 (86.0%25 identity in 86 aa overlap)%2C YPO0967 (79.1%25 identity in 86 aa overlap)%2C YPO1472 (77.9%25 identity in 86 aa overlap) and YPO0970 (73.3%25 identity in 86 aa overlap) gene gene1464 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1475 YPO1476 YPO1476 YPO1476 1671662 1673845 + hypothetical protein No significant database hits to the full length CDS. Weakly similar to an internal region of Xenopus laevis neural-cadherin 1 protein SW:CADN_XENLA (P20310) (905 aa) fasta scores: E(): 1.7%2C 21.7%25 id in 323 aa. Similar to YPO0966 (52.1%25 identity in 570 aa overlap) and YPO1473 (51.7%25 identity in 567 aa overlap) gene gene1465 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1476 YPO1477 YPO1477 YPO1477 1674018 1674488 + hypothetical protein No significant database hits gene gene1466 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1477 YPO1480 YPO1480 YPO1480 1674956 1675823 - transposase (partial) Similar to Shigella sonnei transposase TR:Q9S0S4 (EMBL:AB029445) (343 aa) fasta scores: E(): 0%2C 53.1%25 id in 337 aa%2C and to Salmonella Salmonella enterica IS630 transposase TR:Q53933 (EMBL:D10689) (345 aa) fasta scores: E(): 0%2C 55.5%25 id in 337 aa. Contains frameshift and nonsense mutations%2C and an internal deletion relative to other othologues. Probable gene remnant%3B~was marked partial mRNA gene1467 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1480 YPO1481 YPO1481 YPO1481 1676764 1677885 + hypothetical protein Poor database matches%2C similar to an internal fragment of Gallus gallus transcriptional regulator protein Mll TR:Q9YGM0 (EMBL:AJ011003) (945 aa) fasta scores: E(): 4.4%2C 21.0%25 id in 300 aa gene gene1468 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1481 YPO1482 YPO1482 YPO1482 1677882 1681304 + putative membrane protein Similar to Pseudomonas aeruginosa hypothetical protein PA1669 TR:AAG05058 (EMBL:AE004594) (1175 aa) fasta scores: E(): 5.7e-12%2C 22.7%25 id in 1225 aa%2C and to Legionella pneumophila conjugation associated protein IcmF TR:O54529 (EMBL:Y15044) (973 aa) fasta scores: E(): 1.5e-05%2C 20.6%25 id in 1069 aa gene gene1469 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1482 YPO1483 YPO1483 YPO1483 1681348 1682949 + hypothetical protein Weakly similar to Pseudomonas aeruginosa hypothetical protein PA1656 TR:AAG05045 (EMBL:AE004593) (518 aa) fasta scores: E(): 3.3e-19%2C 26.5%25 id in 480 aa%2Cand to Vibrio cholerae hypothetical protein VCA0119 TR:Q9KN46 (EMBL:AE004353) (469 aa) fasta scores: E(): 0.00019%2C 23.6%25 id in 487 aa gene gene1470 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1483 YPO1484 YPO1484 YPO1484 1682940 1684025 + hypothetical protein No significant database hits. N-terminal region is similar to the N-terminus of YPO0873 (62.1%25 identity in 124 aa overlap) gene gene1471 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1484 YPO1484a YPO1484a YPO1484a 1684025 1684495 + hypothetical protein No significant database hits gene gene1472 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1484a YPO1485 YPO1485 YPO1485 1684716 1686479 + conserved hypothetical protein Similar to Vibrio cholerae hypothetical protein VCA0110 TR:Q9KN55 (EMBL:AE004353) (589 aa) fasta scores: E(): 0%2C 31.2%25 id in 593 aa%2C and to Pseudomonas aeruginosa hypothetical protein PA2369 TR:AAG05757 (EMBL:AE004663) (597 aa) fasta scores: E(): 0%2C 29.3%25 id in 610 aa gene gene1473 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1485 YPO1486 YPO1486 YPO1486 1686443 1687528 + conserved hypothetical protein Similar to Vibrio cholerae hypothetical protein VCA0111 TR:Q9KN54 (EMBL:AE004353) (338 aa) fasta scores: E(): 9.8e-19%2C 27.3%25 id in 322 aa%2C and to Escherichia coli O157:H7 hypothetical protein Z0259 TR:AAG54528 (EMBL:AE005198) (360 aa) fasta scores: E(): 2e-17%2C 30.9%25 id in 317 aa gene gene1474 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1486 YPO1487 YPO1487 YPO1487 1687596 1688084 + conserved hypothetical protein Similar to Pseudomonas aeruginosa hypothetical protein Pa1666 TR:AAG05055 (EMBL:AE004594) (168 aa) fasta scores: E(): 0.00016%2C 28.4%25 id in 134 aa gene gene1475 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1487 YPO1488 YPO1488 YPO1488 1688084 1688536 + conserved hypothetical protein Poor database matches%2C N-terminus similar to N-terminal region of Pseudomonas aeruginosa hypothetical protein PA1659 TR:AAG05048 (EMBL:AE004593) (135 aa) fasta scores: E(): 7e-05%2C 30.0%25 id in 120 aa gene gene1476 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1488 YPO1489 YPO1489 YPO1489 1688561 1689928 + hypothetical protein Poor database hits%2C weakly similar to Vibrio cholerae hypothetical protein VCA0121 TR:Q9KN44 (EMBL:AE004353) (421 aa) fasta scores: E(): 2e-06%2C 22.5%25 id in 445 aa gene gene1477 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1489 YPO1490 YPO1490 YPO1490 1690140 1690763 - hypothetical protein Poor database hits%2C weakly similar to the N-terminal region of Vibrio cholerae aldo/keto reductase family protein VC0667 TR:Q9KU57 (EMBL:AE004153) (352 aa) fasta scores: E(): 2.2%2C 25.4%25 id in 189 aa gene gene1478 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1490 YPO1491 YPO1491 ybiT ybiT 1691446 1693041 + ABC transporter ATP-binding protein Similar to Escherichia coli hypothetical ABC transporter ATP-binding protein YbiT SW:YBIT_ECOLI (P75790) (530 aa) fasta scores: E(): 0%2C 87.0%25 id in 529 aa%2C and to Vibrio cholerae ABC transporter%2C ATP-binding protein VC1520 TR:Q9KRW4 (EMBL:AE004230) (530 aa) fasta scores: E(): 0%2C75.6%25 id in 529 aa gene gene1479 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1491 YPO1492 YPO1492 YPO1492 1693269 1693922 + hypothetical protein Poor database hits%2C C-terminus similar to C-terminal region of to Methanococcus jannaschii hypothetical protein MJ0629 SW:Y629_METJA (Q58046) (214 aa) fasta scores: E(): 0.45%2C 24.4%25 id in 160 aa gene gene1480 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1492 YPO1493 YPO1493 y1062 y1062 1693966 1695174 - transposase Previously sequenced as Yersinia pestis transposase Y1062 TR:O68779 (EMBL:AF053947) (402 aa) fasta scores: E(): 0%2C 100.0%25 id in 402 aa. Similar to Escherichia coli transposase-like protein TnpA TR:AAG18473 (EMBL:AF143819) (402 aa) fasta scores: E(): 0%2C 76.1%25 id in 402 aa gene gene1481 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1493 YPO1494 YPO1494 chlN chlN 1695310 1696077 - molybdopterin biosynthesis protein Similar to Escherichia coli molybdopterin biosynthesis protein MoeB SW:MOEB_ECOLI (P12282) (249 aa) fasta scores: E(): 0%2C 69.2%25 id in 247 aa%2C and to Salmonella typhimurium molybdopterin biosynthesis protein MoeB SW:MOEB_SALTY (Q56067) (249 aa) fasta scores: E(): 0%2C 67.2%25 id in 247 aa gene gene1482 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1494 YPO1495 YPO1495 bisB bisB 1696082 1697356 - molybdopterin biosynthesis protein Similar to Escherichia coli molybdopterin biosynthesis protein MoeA SW:MOEA_ECOLI (P12281) (411 aa) fasta scores: E(): 0%2C 68.1%25 id in 407 aa%2C and to Salmonella typhimurium molybdopterin biosynthesis protein MoeA SW:MOEA_SALTY (Q56066) (412 aa) fasta scores: E(): 0%2C 65.0%25 id in 408 aa gene gene1483 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1495 YPO1496 YPO1496 YPO1496 1697891 1699201 - putative heme-binding protein Weakly similar to Bacteroides thetaiotaomicron chondro-6-sulfatase regulatory protein ChuR SW:CHUR_BACTN (Q02550) (401 aa) fasta scores: E(): 1e-17%2C 25.5%25 id in 388 aa%2C and to Escherichia coli hypothetical protein YdeM SW:YDEM_ECOLI (P76134) (385 aa) fasta scores: E(): 8.7e-24%2C28.3%25 id in 361 aa gene gene1484 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1496 YPO1497 YPO1497 YPO1497 1699211 1699879 - ABC transporter ATP-binding protein Similar to Streptococcus cristatus ATP-binding cassette protein TptC TR:O54499 (EMBL:U96166) (224 aa) fasta scores: E(): 0%2C 46.2%25 id in 221 aa%2C and to Staphylococcus aureus ABC transporter ATP-binding protein VraD TR:Q9RL74 (EMBL:Y18641) (252 aa) fasta scores: E(): 5.8e-31%2C 42.3%25 id in 222 aa gene gene1485 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1497 YPO1498 YPO1498 YPO1498 1699881 1701143 - putative exported protein Similar to Neisseria gonorrhoeae efflux pump protein FarA TR:Q9RQ30 (EMBL:AF132909) (394 aa) fasta scores: E(): 2.1e-05%2C 22.0%25 id in 300 aa%2C and to Neisseria meningitidis fatty acid efflux system protein NMB0318 TR:Q9K160 (EMBL:AE002389) (384 aa) fasta scores: E(): 3.1e-05%2C 22.0%25 id in 300 aa gene gene1486 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1498 YPO1499 YPO1499 YPO1499 1701145 1703505 - putative membrane protein No significant database matches gene gene1487 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1499 YPO1500 YPO1500 YPO1500 1703589 1703801 - hypothetical protein No significant database hits gene gene1488 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1500 YPO1501 YPO1501 YPO1501 1704058 1704900 - putative esterase Similar to Homo sapiens esterase D SW:ESTD_Human (P10768) (282 aa) fasta scores: E(): 0%2C 50.9%25 id in 279 aa%2Cand to Escherichia coli hypothetical 31.3 kDa protein in folE-cirA intergenic region YeiG SW:YEIG_ECOLI (P33018) (278 aa) fasta scores: E(): 0%2C 73.2%25 id in 276 aa gene gene1489 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1501 YPO1502 YPO1502 YPO1502 1704921 1706054 - probable alcohol dehydrogenase Similar to Escherichia coli formaldehyde dehydrogenase TR:Q59399 (EMBL:X73835) (369 aa) fasta scores: E(): 0%2C 72.6%25 id in 369 aa%2C and to Acinetobacter baumannii glutathione-dependent formaldehyde dehydrogenase Gd-FaldH TR:Q9S4L6 (EMBL:AF130307) (369 aa) fasta scores: E(): 0%2C 71.3%25 id in 369 aa. There is an alternative methionine start codon upstream%3B~deleted EC_number 1.2.1.1 gene gene1490 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1502 YPO1503 YPO1503 YPO1503 1706334 1707203 - putative LysR-family transcriptional regulatory protein Similar to Pseudomonas aeruginosa probable transcriptional regulator TR:AAG04802 (EMBL:AE004571) (290 aa) fasta scores: E(): 0%2C 53.8%25 id in 277 aa%2C and to E. coli hypothetical transcriptional regulator YneJ SW:YNEJ_ECOLI (P77309) (293 aa) fasta scores: E(): 51.6%25 id in 289 aa gene gene1491 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1503 YPO1504 YPO1504 YPO1504 1707339 1708490 + putative exported protein Some similarity to Streptomyces viridifaciens valanimycin resistant protein VlmF TR:Q9LA76 (EMBL:AF148322) (402 aa) fasta scores: E(): 0.015%2C 26.3%25 id in 358 aa%2C and to Pseudomonas aeruginosa hypothetical protein PA1412 TR: Q9I3T2(EMBL:AE004570) (397 aa) fasta scores: E(): 0%2C 46.1%25 id in 371 aa. Contains a possible N-terminal signal sequence gene gene1492 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1504 YPO1505 YPO1505 folE folE 1708674 1709336 + GTP cyclohydrolase I Similar to Escherichia coli GTP cyclohydrolase I SW:GCH1_ECOLI (P27511) (221 aa) fasta scores: E(): 0%2C 90.0%25 id in 219 aa%2C and to Vibrio cholerae GTP cyclohydrolase Vca0616 TR:Q9KLX5 (EMBL:AE004391) (230 aa) fasta scores: E(): 0%2C 70.2%25 id in 218 aa gene gene1493 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1505 YPO1506 YPO1506 yeiB yeiB 1709391 1710557 + putative exported protein Similar to Escherichia coli hypothetical 43.4 kDa protein in galS-folE intergenic region yeiB SW:YEIB_ECOLI (P25747) (385 aa) fasta scores: E(): 0%2C 60.4%25 id in 376 aa%2Cand to Halobacterium sp. (strain NRC-1)( Q9HNH9)(401 aa) fasta scores: E(): 0%2C 34.4%25 id in 390 aa. Contains a possible N-terminal signal sequence gene gene1494 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1506 YPO1507 YPO1507 mglB mglB 1711305 1712312 + galactose-binding protein Similar to Escherichia coli D-galactose-binding periplasmic protein precursor MglB SW:DGAL_ECOLI (P02927) (332 aa) fasta scores: E(): 0%2C 84.2%25 id in 336 aa%2C and to Citrobacter freundii D-galactose-binding periplasmic protein precursor MglB SW:DGAL_CITFR (P23925) (332 aa) fasta scores: E(): 0%2C 86.9%25 id in 335 aa gene gene1495 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1507 YPO1508 YPO1508 mglA mglA 1712542 1714062 + galactoside transport ATP-binding protein Similar to Escherichia coli galactoside transport ATP-binding protein MglA SW:MGLA_ECOLI (P23199) (506 aa) fasta scores: E(): 0%2C 88.9%25 id in 506 aa%2C and to Salmonella typhimurium galactoside transport ATP-binding protein MglA SW:MGLA_SALTY (P23924) (506 aa) fasta scores: E(): 0%2C 89.7%25 id in 496 aa gene gene1496 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1508 YPO1509 YPO1509 mglC mglC 1714083 1715093 + galactoside permease Similar to Escherichia coli galactoside transport system permease protein MglC SW:MGLC_ECOLI (P23200) (336 aa) fasta scores: E(): 0%2C 89.3%25 id in 336 aa%2C and to Vibrio cholerae galactoside ABC transporter%2C permease protein vc1328 TR:Q9KSD0 (EMBL:AE004212) (337 aa) fasta scores: E(): 0%2C 81.3%25 id in 327 aa gene gene1497 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1509 YPO1510 YPO1510 sanA sanA 1715538 1716275 - putative exported protein Similar to Escherichia coli inner membrane protein SanA protein SW:SANA_ECOLI (P33017) (239 aa) fasta scores: E(): 0%2C 80.1%25 id in 236 aa%2C and to Salmonella typhimurium Sfi protein TR:O33790 (EMBL:AJ002276) (187 aa) fasta scores: E(): 0%2C 79.6%25 id in 167 aa gene gene1498 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1510 YPO1511 YPO1511 maeA maeA 1716556 1718253 - NAD-dependent malic enzyme Similar to Escherichia coli NAD-dependent malic enzyme SfcA or MaeA SW:MAO1_ECOLI (P26616) (574 aa) fasta scores: E(): 0%2C 75.0%25 id in 564 aa%2C and to Schizosaccharomyces pombe NAD-dependent malic enzyme Mae2 or Spcc794.11C SW:MAOX_SCHPO (P40375) (565 aa) fasta scores: E(): 0%2C 41.8%25 id in 562 aa gene gene1499 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1511 YPO1512 YPO1512 cdd cdd 1718609 1719493 - cytidine deaminase Similar to Escherichia coli cytidine deaminase Cdd SW:CDD_ECOLI (P13652) (294 aa) fasta scores: E(): 0%2C 65.1%25 id in 292 aa%2C and to Vibrio cholerae cytidine deaminase Vc1231 TR:Q9KSM5 (EMBL:AE004202) (295 aa) fasta scores: E(): 0%2C 52.1%25 id in 284 aa gene gene1500 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1512 YPO1513 YPO1513 yohK yohK 1719819 1720514 - putative membrane protein Similar to Escherichia coli hypothetical 24.5 kDa protein in pbpG-cdd intergenic region YohK SW:YOHK_ECOLI (P33373) (231 aa) fasta scores: E(): 0%2C 76.6%25 id in 231 aa%2Cand to Vibrio cholerae hypothetical protein Vc1232 TR:Q9KSM4 (EMBL:AE004202) (224 aa) fasta scores: E(): 0%2C52.9%25 id in 225 aa gene gene1501 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1513 YPO1514 YPO1514 yohJ yohJ 1720511 1720918 - putative membrane protein Similar to Escherichia coli hypothetical 14.6 kDa protein in pbpG-cdd intergenic region YohJ SW:YOHJ_ECOLI (P33372) (132 aa) fasta scores: E(): 4.1e-32%2C 64.4%25 id in 132 aa%2C and to Vibrio cholerae hypothetical protein Vc1233 R:Q9KSM3 (EMBL:AE004202) (129 aa) fasta scores: E(): 6.4e-15%2C 49.1%25 id in 108 aa gene gene1502 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1514 YPO1515 YPO1515 YPO1515 1721160 1722341 - putative multidrug resistance protein Similar to Bacillus halodurans multidrug resistance protein Bh3211 TR:Q9K7Z6 (EMBL:AP001518) (388 aa) fasta scores: E(): 0%2C 31.5%25 id in 378 aa%2C and to Escherichia coli hypothetical 42.7 kDa protein in marb-dcp intergenic region YdeE SW:YDEE_ECOLI (P31126) (395 aa) fasta scores: E(): 0%2C39.4%25 id in 381 aa gene gene1503 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1515 YPO1516 YPO1516 YPO1516 1722674 1723930 - hypothetical protein No significant database hits gene gene1504 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1516 YPO1517 YPO1517 YPO1517 1723945 1725036 - putative sugar ABC transporter Similar to Salmonella typhimurium D-ribose-binding periplasmic protein precursor RbsB or RbsP SW:RBSB_SALTY (P02926) (296 aa) fasta scores: E(): 0.0026%2C 22.3%25 id in 278 aa%2C and to Escherichia coli ABC transporter periplasmic binding protein YphF precursor SW:YPHF_ECOLI (P77269) (327 aa) fasta scores: E(): 0.0014%2C 26.5%25 id in 257 aa gene gene1505 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1517 YPO1518 YPO1518 YPO1518 1725854 1726381 + putative membrane protein Weakly similar to membrane spanning regions of various eukaryoteic NADH dehydrogenase subunits: Onchocerca volvulus NADH dehydrogenase subunit 5 TR:O47582 (EMBL:AF015193) (531 aa) fasta scores: E(): 0.74%2C 22.6%25 id in 168 aa gene gene1506 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1518 YPO1519 YPO1519 ypmt1.57c ypmt1.57c 1726646 1727428 - insertion sequence IS100%2C ATP-binding protein Similar to Escherichia coli insertion sequence IS21 putative ATP-binding protein%2C IstB SW:ISTB_ECOLI (P15026) (265 aa) fasta scores: E(): 0%2C 47.4%25 id in 249 aa. Also almost identical to Yersinia pestis and Escherichia coli putative IS100 transposase ypmt1.57c TR:Q9R3L5 (EMBL:AL117211) (260 aa) fasta scores: E(): 0%2C 99.6%25 id in 260 aa. gene gene1507 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1519 YPO1520 YPO1520 y1093 y1093 1727425 1728447 - transposase for insertion sequence IS100 Similar to Escherichia coli transposase for insertion sequence element IS21 IstA SW:ISTA_ECOLI (P15025) (390 aa) fasta scores: E(): 3e-27%2C 33.1%25 id in 329 aa. Identical to the previously sequenced Yersinia pestis%2CYersinia pseudotuberculosis%2C and Escherichia coli pesticin plasmid insertion sequence transposase Y1055 TR:P74993 (EMBL:U59875) (340 aa) fasta scores: E(): 0%2C 100.0%25 id in 340 aa gene gene1508 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1520 YPO1521 YPO1521 tnp tnp 1728558 1729016 + transposase for the IS1541 insertion element Similar to Salmonella typhimurium%2C and Salmonella typhi transposase for insertion sequence IS200 TnpA SW:T200_SALTY (Q57334) (152 aa) fasta scores: E(): 0%2C 94.1%25 id in 152 aa. Identical to the Yersinia pseudotuberculosis IS1541-like element transposase Tnp TR:Q9X9F5 (EMBL:AJ238014) (152 aa) fasta scores: E(): 0%2C 100.0%25 id in 152 aa gene gene1509 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1521 YPO1522 YPO1522 metG metG 1729180 1731207 - methionyl-tRNA synthetase Similar to Escherichia coli methionyl-tRNA synthetase MetG SW:SYM_ECOLI (P00959) (676 aa) fasta scores: E(): 0%2C 84.9%25 id in 675 aa%2C and to Haemophilus influenzae methionyl-tRNA synthetase MetG or Hi1276 SW:SYM_HAEIN (P43828) (682 aa) fasta scores: E(): 0%2C 67.6%25 id in 683 aa gene gene1510 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1522 YPO1523 YPO1523 YPO1523 1731472 1732584 + conserved hypothetical protein Similar to Escherichia coli Mrp protein SW:MRP_ECOLI (P21590) (379 aa) fasta scores: E(): 0%2C 76.8%25 id in 370 aa%2Cand to Haemophilus influenzae Mrp protein homolog SW:MRP_HAEIN (P45135) (386 aa) fasta scores: E(): 0%2C 64.0%25 id in 356 aa gene gene1511 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1523 YPO1524 YPO1524 b2066 b2066 1732829 1733470 + uridine kinase Similar to Escherichia coli uridine kinase SW:URK_ECOLI (P31218) (213 aa) fasta scores: E(): 0%2C 91.1%25 id in 213 aa%2C and to Vibrio cholerae uridine kinase vc1038 TR:Q9KT67 (EMBL:AE004185) (219 aa) fasta scores: E(): 0%2C75.0%25 id in 208 aa gene gene1512 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1524 YPO1525 YPO1525 b2065 b2065 1733575 1734156 + deoxycytidine triphosphate deaminase Similar to Escherichia coli deoxycytidine triphosphate deaminase SW:DCD_ECOLI (P28248) (193 aa) fasta scores: E(): 0%2C 90.7%25 id in 193 aa%2C and to Haemophilus influenzae deoxycytidine triphosphate deaminase dcd or hi0133 SW:DCD_HAEIN (P44534) (195 aa) fasta scores: E(): 0%2C76.7%25 id in 193 aa gene gene1513 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1525 YPO1526 YPO1526 YPO1526 1734343 1736199 + putative exported protein Similar to Escherichia coli AsmA protein precursor SW:ASMA_ECOLI (P28249) (617 aa) fasta scores: E(): 46.1%25 id in 625 aa%2C and to Vibrio cholerae AsmA protein vc1039 TR:Q9KT66 (EMBL:AE004185) (703 aa) fasta scores: E(): 8.1e-13%2C 23.5%25 id in 714 aa gene gene1514 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1526 YPO1527 YPO1527 YPO1527 1736344 1737930 - putative membrane protein Similar to Escherichia coli hypothetical 59.5 kDa protein in wza-asmA intergenic region SW:YEGH_ECOLI (P76389) (527 aa) fasta scores: E(): 0%2C 72.0%25 id in 529 aa%2Cand to Pseudomonas aeruginosa TR:AAG04720 (Q9I413) (515 aa) fasta scores: E(): 0%2C 54.4%25 id in 515 aa. Similar to YPO1759 (44.8%25 identity in 471 aa overlap) gene gene1515 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1527 YPO1528 YPO1528 YPO1528 1738372 1739151 + putative ferric iron reductase Similar to Escherichia coli ferric iron reductase protein FhuF SW:FHUF_ECOLI (P39405) (262 aa) fasta scores: E(): 8.4e-33%2C 35.0%25 id in 246 aa gene gene1516 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1528 YPO1529 YPO1529 YPO1529 1739303 1740850 + putative decarboxylase Similar to Enterobacter aerogenes L-2%2C4-diaminobutyrate decarboxylase ddC TR:Q9S0P8 (EMBL:AB032468) (490 aa) fasta scores: E(): 0%2C 39.3%25 id in 468 aa%2C and to Acinetobacter baumannii L-2%2C4-diaminobutyrate decarboxylase ddC SW:DDC_ACIBA (Q43908) (510 aa) fasta scores: E(): 0%2C 38.3%25 id in 431 aa gene gene1517 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1529 YPO1530 YPO1530 alcA alcA 1740885 1742183 + putative siderophore biosynthetic enzyme Similar to Bordetella bronchiseptica alcaligin biosynthesis enzyme SW:ALCA_BORBR (Q44740) (461 aa) fasta scores: E(): 0%2C 49.6%25 id in 425 aa%2C and to Streptomyces coelicolor putative monooxygenase Scc105.14 TR:Q9L071 (EMBL:AL163641) (413 aa) fasta scores: E(): 0%2C 53.7%25 id in 419 aa gene gene1518 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1530 YPO1531 YPO1531 alcB alcB 1742180 1742761 + putative siderophore biosynthetic enzyme Similar to Bordetella bronchiseptica AlcB alcB TR:P94254 (EMBL:U61153) (201 aa) fasta scores: E(): 2e-27%2C43.7%25 id in 174 aa%2C and to Streptomyces coelicolor putative acetyltranferase scc105.15 TR:Q9L070 (EMBL:AL163641) (184 aa) fasta scores: E(): 3e-23%2C 39.5%25 id in 172 aa gene gene1519 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1531 YPO1532 YPO1532 YPO1532 1742758 1744602 + putative siderophore biosynthetic enzyme Similar to Bordetella bronchiseptica AlcC TR:P94255 (EMBL:U61153) (618 aa) fasta scores: E(): 0%2C 53.5%25 id in 608 aa%2C and to Streptomyces coelicolor hypothetical 66.6 kDa protein Scc105.16 TR:Q9L069 (EMBL:AL163641) (595 aa) fasta scores: E(): 0%2C 49.4%25 id in 589 aa. Similar to YPO1538 (46.8%25 identity in 596 aa overlap). gene gene1520 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1532 YPO1533 YPO1533 YPO1533 1744711 1745559 - putative iron-siderophore transport system%2CATP-binding component Similar to Vibrio cholerae ferric vibriobactin ABC transporter%2C ATP-binding protein vc0779 TR:Q9KTV8 (EMBL:AE004163) (279 aa) fasta scores: E(): 0%2C 55.9%25 id in 263 aa%2C and to Streptomyces coelicolor putative iron-siderophore uptake system ATP-binding component sci51.25C TR:Q9S215 (EMBL:AL109848) (301 aa) fasta scores: E(): 0%2C 57.2%25 id in 264 aa gene gene1521 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1533 YPO1534 YPO1534 YPO1534 1745556 1746596 - putative iron-siderophore transport system%2Cmembrane permease component Similar to Vibrio cholerae cytoplasmic membrane permease ViuG or vc0778 TR:Q9RCF4 (EMBL:U52150) (358 aa) fasta scores: E(): 8.1e-32%2C 36.5%25 id in 329 aa%2C and to Yersinia enterocolitica FepG TR:Q9X3S2 (EMBL:AF082879) (347 aa) fasta scores: E(): 2.5e-31%2C 37.0%25 id in 343 aa gene gene1522 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1534 YPO1535 YPO1535 YPO1535 1746583 1747623 - putative iron-siderophore transport system%2Ctransmembrane component Similar to Escherichia coli ferric enterobactin transport system permease protein FepD fepD SW:FEPD_ECOLI (P23876) (334 aa) fasta scores: E(): 0%2C 42.0%25 id in 331 aa%2Cand to Streptomyces coelicolor putative iron-siderophore uptake system transmembrane component sci51.27C TR:Q9S213 (EMBL:AL109848) (348 aa) fasta scores: E(): 0%2C 43.8%25 id in 333 aa gene gene1523 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1535 YPO1536 YPO1536 YPO1536 1747620 1748699 - putative iron-siderophore transport system%2Cperiplasmic binding protein Similar to Corynebacterium diphtheriae dtxr/iron-regulated lipoprotein precursor irp1 TR:Q46023 (EMBL:U02617) (355 aa) fasta scores: E(): 1.2e-26%2C 29.8%25 id in 362 aa%2C and to Escherichia coli ferrienterobactin-binding periplasmic protein precursor fepB SW:FEPB_ECOLI (P14609) (318 aa) fasta scores: E(): 6.6e-08%2C 26.3%25 id in 278 aa gene gene1524 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1536 YPO1537 YPO1537 YPO1537 1748789 1751050 - putative iron-siderophore receptor Similar to Bordetella pertussis ferric alcaligin siderophore receptor FauA TR:Q9X6A5 (EMBL:AF135154) (734 aa) fasta scores: E(): 0%2C 38.2%25 id in 733 aa%2C and to Escherichia coli FhuE receptor precursor SW:FHUE_ECOLI (P16869) (729 aa) fasta scores: E(): 0%2C 37.0%25 id in 695 aa gene gene1525 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1537 YPO1538 YPO1538 YPO1538 1751263 1753077 - putative siderophore biosynthetic enzyme Similar to Bordetella bronchiseptica siderophore biosynthetic enzyme AlcC TR:P94255 (EMBL:U61153) (618 aa) fasta scores: E(): 0%2C 47.0%25 id in 594 aa%2C and to Streptomyces coelicolor hypothetical 66.6 kDa protein Scc105.16 TR:Q9L069 (EMBL:AL163641) (595 aa) fasta scores: E(): 0%2C 46.3%25 id in 590 aa. Similar to YPO1532 (46.8%25 identity in 596 aa overlap). gene gene1526 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1538 YPO1539 YPO1539 galU galU 1754023 1754913 + UTP-glucose-1-phosphate uridylyltransferase Similar to Escherichia coli UTP-glucose-1-phosphate uridylyltransferase SW:GALU_ECOLI (P25520) (301 aa) fasta scores: E(): 0%2C 73.5%25 id in 294 aa%2C and to Haemophilus influenzae UTP-glucose-1-phosphate uridylyltransferase GalU or hi0812 SW:GALU_HAEIN (P44878) (295 aa) fasta scores: E(): 0%2C 71.6%25 id in 289 aa. This CDS (GalU) is similar (64.2%25 in 293 aa overlap) to the adjacent CDS%2C YPO1540 (GalF) gene gene1527 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1539 YPO1540 YPO1540 galF galF 1754997 1755890 + UTP-glucose-1-phosphate uridylyltransferase Similar to Escherichia coli UTP-glucose-1-phosphate uridylyltransferase SW:GALF_ECOLI (P78083) (297 aa) fasta scores: E(): 0%2C 65.3%25 id in 297 aa%2C and to Klebsiella pneumoniae UTP-glucose-1-phosphate uridylyltransferase GalF SW:GALF_KLEPN (Q48447) (298 aa) fasta scores: E(): 0%2C 64.3%25 id in 297 aa. This CDS (GalF) is similar (64.2%25 in 293 aa overlap) to the adjacent CDS YPO1539 (GalU). Both GalU and GalF have been designated UTP-glucose-1-phosphate uridylyltransferase. However%2C it has been proposed that GalF is a non-catalytic subunit of the UDP-glucose pyrophosphorylase modulating the enzyme activity to increase the formation of UDP-glucose%2C Mol Microbiol 1996 Dec%3B22(5):827-40 gene gene1528 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1540 YPO1541 YPO1541 gnd gnd 1756276 1757685 + 6-phosphogluconate dehydrogenase%2Cdecarboxylating Similar to Escherichia coli 6-phosphogluconate dehydrogenase%2C decarboxylating Gnd SW:6PGD_ECOLI (P00350) (468 aa) fasta scores: E(): 0%2C 87.6%25 id in 468 aa%2C and to Salmonella typhimurium 6-phosphogluconate dehydrogenase%2Cdecarboxylating Gnd SW:6PGD_SALTY (P14062) (468 aa) fasta scores: E(): 0%2C 87.4%25 id in 468 aa gene gene1529 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1541 YPO1542 YPO1542 hisI hisI 1757885 1758499 - histidine biosynthesis bifunctional protein [includes: phosphoribosyl-amp cyclohydrolase Similar to Escherichia coli histidine biosynthesis bifunctional protein HisIE [includes: phosphoribosyl-AMP cyclohydrolase SW:HIS2_ECOLI (P06989) (203 aa) fasta scores: E(): 0%2C 79.8%25 id in 203 aa%2C and to Salmonella typhimurium histidine biosynthesis bifunctional protein HisIE [includes: phosphoribosyl-AMP cyclohydrolase SW:HIS2_SALTY (P10367) (203 aa) fasta scores: E(): 0%2C 79.3%25 id in 203 aa gene gene1530 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1542 YPO1543 YPO1543 hisF hisF 1758493 1759269 - histidine biosynthesic protein (cyclase) Similar to Escherichia coli histidine biosynthesis protein HisF SW:HIS6_ECOLI (P10373) (258 aa) fasta scores: E(): 0%2C 86.0%25 id in 258 aa%2C and to Klebsiella pneumoniae HisF protein SW:HIS6_KLEPN (P45603) (258 aa) fasta scores: E(): 0%2C 85.7%25 id in 258 aa gene gene1531 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1543 YPO1544 YPO1544 hisA hisA 1759251 1759988 - phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase Similar to Escherichia coli phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase HisA SW:HIS4_ECOLI (P10371) (245 aa) fasta scores: E(): 0%2C 79.5%25 id in 244 aa%2C and to Salmonella typhimurium phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase HisA SW:HIS4_SALTY (P10372) (246 aa) fasta scores: E(): 0%2C 76.0%25 id in 246 aa gene gene1532 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1544 YPO1545 YPO1545 hisH hisH 1759994 1760584 - amidotransferase Similar to Escherichia coli amidotransferase HisH SW:HIS5_ECOLI (P10375) (196 aa) fasta scores: E(): 0%2C 75.5%25 id in 196 aa%2C and to Salmonella typhimurium amidotransferase HisH SW:HIS5_SALTY (P10376) (194 aa) fasta scores: E(): 0%2C 72.6%25 id in 197 aa gene gene1533 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1545 YPO1546 YPO1546 hisB hisB 1760584 1761651 - histidinol-phosphatase and imidazoleglycerol-phosphate dehydratase Similar to Escherichia coli histidinol-phosphatase and imidazoleglycerol-phosphate dehydratase HisB TR:Q9S5G5 (P06987) (355 aa) fasta scores: E(): 0%2C 81.4%25 id in 355 aa%2Cand to Salmonella typhimurium histidine biosynthesis bifunctional protein HisB [includes: histidinol-phosphatase HisB SW:HIS7_SALTY (P10368) (354 aa) fasta scores: E(): 0%2C78.9%25 id in 355 aa gene gene1534 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1546 YPO1547 YPO1547 hisC hisC 1761648 1762796 - histidinol-phosphate aminotransferase Similar to Escherichia coli histidinol-phosphate aminotransferase HisC SW:HIS8_ECOLI (P06986) (356 aa) fasta scores: E(): 0%2C 74.3%25 id in 346 aa%2C and to Salmonella typhimurium histidinol-phosphate aminotransferase HisC SW:HIS8_SALTY (P10369) (359 aa) fasta scores: E(): 0%2C 73.5%25 id in 358 aa gene gene1535 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1547 YPO1548 YPO1548 hisD hisD 1762799 1764130 - histidinol dehydrogenase Similar to Escherichia coli histidinol dehydrogenase HisD SW:HISX_ECOLI (P06988) (433 aa) fasta scores: E(): 0%2C75.5%25 id in 429 aa%2C and to Salmonella typhimurium histidinol dehydrogenase HisD SW:HISX_SALTY (P10370) (433 aa) fasta scores: E(): 0%2C 77.2%25 id in 429 aa gene gene1536 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1548 YPO1549 YPO1549 hisG hisG 1764134 1765033 - ATP phosphoribosyltransferase Similar to Escherichia coli ATP phosphoribosyltransferase HisG SW:HIS1_ECOLI (P10366) (299 aa) fasta scores: E(): 0%2C 88.0%25 id in 299 aa%2C and to Salmonella typhimurium ATP phosphoribosyltransferase HisG SW:HIS1_SALTY (P00499) (299 aa) fasta scores: E(): 0%2C 87.3%25 id in 299 aa gene gene1537 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1549 YPO1550 YPO1550 YPO1550 1765123 1765347 + hypothetical protein Weakly similar to Vibrio cholerae hypothetical protein VC2263 TR:Q9KPU9 (EMBL:AE004298) (32 aa) fasta scores: E():4.1%2C 47.1%25 id in 34 aa gene gene1538 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1550 YPO1551 YPO1551 YPO1551 1765739 1766566 + putative exported protein Similar to Escherichia coli hypothetical protein YeeZ SW:YEEZ_ECOLI (P76370) (274 aa) fasta scores: E(): 0%2C65.7%25 id in 274 aa%2C and to Deinococcus radiodurans conserved hypothetical protein DR0832 TR:Q9RW37 (EMBL:AE001937) (290 aa) fasta scores: E(): 4.4e-31%2C 40.4%25 id in 267 aa gene gene1539 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1551 YPO1552 YPO1552 YPO1552 1766721 1767155 - putative exported protein Doubtful CDS with no significant database hits. The N-terminal region is similar to a repeat region which is found scattered throughout the genome gene gene1540 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1552 YPO1553 YPO1553 YPO1553 1767400 1768395 - ribose transport system%2C permease protein Similar to Escherichia coli ribose transport system permease protein RbsC SW:RBSC_ECOLI (P04984) (321 aa) fasta scores: E(): 4.1e-27%2C 35.9%25 id in 309 aa%2C and to Bacillus subtilis membrane transport protein RbsC TR:P96731 (EMBL:Z92953) (322 aa) fasta scores: E(): 1.5e-30%2C 37.2%25 id in 309 aa gene gene1541 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1553 YPO1554 YPO1554 YPO1554 1768392 1769932 - sugar transport ATP-binding protein (pseudogene) Similar to Bacillus subtilis ribose transport ATP-binding protein RbsA SW:RBSA_BACSU (P36947) (493 aa) fasta scores: E(): 0%2C 35.9%25 id in 502 aa%2C and to Escherichia coli O157:H7 putative ATP-binding protein of ribose ABC transport system Z5691 TR:AAG59288 (EMBL:AE005642) (517 aa) fasta scores: E(): 0%2C 36.8%25 id in 505 aa. There is a deletion and subsequent frameshift following codon 282. The sequence has been checked and is believed to be correct pseudogene gene1542 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1554 YPO1556 YPO1556 YPO1556 1770218 1771309 + putative dehydrogenase Similar to Escherichia coli hypothetical oxidoreductase in cstA-ahpC intergenic region YbdH SW:YBDH_ECOLI (P45579) (362 aa) fasta scores: E(): 0%2C 66.2%25 id in 358 aa%2C and to Escherichia coli glycerol dehydrogenase GldA SW:GLDA_ECOLI (P32665) (367 aa) fasta scores: E(): 5e-29%2C 33.9%25 id in 357 aa gene gene1543 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1556 YPO1557 YPO1557 yeeF yeeF 1771769 1773160 + Amino acid permease Similar to Escherichia coli proline transport protein YeeF TR:BAA15842 (EMBL:D90839) (454 aa) fasta scores: E(): 0%2C 73.8%25 id in 447 aa%2C and to Escherichia coli lysine-specific permease TR:P77557 (EMBL:D90767) (433 aa) fasta scores: E(): 0%2C 67.7%25 id in 424 aa gene gene1544 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1557 YPO1558 YPO1558 cpeA cpeA 1773897 1775327 - exodeoxyribonuclease I Similar to Escherichia coli exodeoxyribonuclease I SW:EX1_ECOLI (P04995) (475 aa) fasta scores: E(): 0%2C 73.1%25 id in 475 aa%2C and to Vibrio cholerae exodeoxyribonuclease I VC1234 TR:Q9KSM2 (EMBL:AE004202) (474 aa) fasta scores: E(): 0%2C 58.7%25 id in 472 aa gene gene1545 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1558 YPO1559 YPO1559 YPO1559 1775590 1776729 + hypothetical protein Weakly similar to Pseudomonas aeruginosa hypothetical protein TR:AAG04948 (EMBL:AE004584) (243 aa) fasta scores: E(): 1.9e-32%2C 45.5%25 id in 213 aa%2C and to Anabaena sp polyketide synthase HetM SW:HETM_ANASP (P37693) (506 aa) fasta scores: E(): 6.6e-06%2C 24.0%25 id in 296 aa%2Cand to Myxococcus xanthus saframycin mx1 synthetase A SafA TR:Q50858 (EMBL:U24657) (2605 aa) fasta scores: E(): 0.00015%2C 25.5%25 id in 251 aa gene gene1546 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1559 YPO1560 YPO1560 YPO1560 1777163 1777480 + conserved hypothetical protein Similar to Escherichia coli hypothetical protein YeeX SW:YEEX_ECOLI (P76367) (109 aa) fasta scores: E(): 1.5e-29%2C 84.2%25 id in 101 aa%2C and to Haemophilus influenzae hypothetical protein HI1168 SW:YEEX_HAEIN (P44117) (114 aa) fasta scores: E(): 2.7e-20%2C 61.6%25 id in 99 aa gene gene1547 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1560 YPO1561 YPO1561 y1062 y1062 1777851 1779059 + transposase for the IS285 insertion element Previously sequenced Yersinia pestis transposase Y1062 or Ypmt1.80C TR:O68779 (EMBL:AF053947) (402 aa) fasta scores: E(): 0%2C 100.0%25 id in 402 aa. gene gene1549 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1561 YPO1562 YPO1562 YPO1562 1777624 1777770 - putative intimin (pseudogene) CDS is disrupted by the insertion of IS285 element after codon 1024%2C near the C-terminus of the protein. It is not clear whether this insertion affects the function of the protein. The full length CDS is similar to Escherichia coli intimin EaeA TR:AAC38392 (EMBL:M58154) (939 aa) fasta scores: E(): 0%2C 33.7%25 id in 732 aa%2C and to Escherichia coli O157:H7 EDL933 putative adhesin EaeH TR:AAG54632 (EMBL:AE005207) (1417 aa) fasta scores: E(): 0%2C 30.7%25 id in 1111 aa pseudogene gene1548 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1562 YPO1563 YPO1563 YPO1563 1783103 1784503 + putative transmembrane transporter Similar to Agrobacterium vitis putative tartrate transporter TtuB SW:TUB3_AGRVI (P70786) (449 aa) fasta scores: E(): 0%2C 38.1%25 id in 417 aa%2C and to Burkholderia cepacia phthalate transporter OphD TR:Q9RPP3 (EMBL:AF152094) (448 aa) fasta scores: E(): 0%2C 32.3%25 id in 412 aa%2C and to Escherichia coli hypothetical 46.3 kDa protein in glpc-ais intergenic region YfaV SW:YFAV_ECOLI (P76470) (429 aa) fasta scores: E(): 0%2C 54.4%25 id in 412 aa gene gene1550 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1563 YPO1564 YPO1564 YPO1564 1784512 1784937 - putative membrane protein Similar to Bacillus subtilis hypothetical 15.7 kDa protein in pbpD-comA intergenic region YuxK SW:YUXK_BACSU (P40761) (137 aa) fasta scores: E(): 3.2e-19%2C 39.8%25 id in 128 aa%2C and to Xylella fastidiosa hypothetical protein Xf0941 TR:Q9PET7 (EMBL:AE003933) (152 aa) fasta scores: E(): 5e-18%2C 40.6%25 id in 128 aa gene gene1551 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1564 YPO1565 YPO1565 YPO1565 1785362 1786102 + putative oxidoreductase Similar to Homo sapiens oxidoreductase UcpA TR:Q9NRX8 (EMBL:AF164790) (245 aa) fasta scores: E(): 0%2C56.1%25 id in 246 aa%2C and to Escherichia coli oxidoreductase UcpA SW:UCPA_ECOLI (P37440) (285 aa) fasta scores: E(): 3.5e-23%2C 41.3%25 id in 252 aa gene gene1552 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1565 YPO1566 YPO1566 YPO1566 1786150 1786992 + putative hydrolase Similar to many proposed: 2-hydroxyhepta-2%2C4-diene-1%2C 7-dioate isomerase/5-carboxymethyl-2-oxo-hex-3-ene-1%2C7-dioatedecarb oxylase e.g. Rhodobacter capsulatus TR:O68122 (EMBL:AF010496) (280 aa) fasta scores: E(): 0%2C 56.1%25 id in 280 aa%2C and to Streptomyces coelicolor Sce20.24C TR:Q9RDA1 (EMBL:AL136058) (285 aa) fasta scores: E(): 0%2C 53.7%25 id in 285 aa gene gene1553 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1566 YPO1567 YPO1567 YPO1567 1787099 1788301 + putative racemase Similar to several racemases from Homo sapiens associated with quorum sensing functions in human cells e.g. RTS beta TR:Q15407 (EMBL:X89602) (416 aa) fasta scores: E(): 0%2C 53.1%25 id in 401 aa%2C and to Homo sapiens RTS alpha TR:AAG29536 (EMBL:AF305057) (361 aa) fasta scores: E(): 0%2C 54.1%25 id in 331 aa gene gene1554 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1567 YPO1568 YPO1568 YPO1568 1788380 1788553 + hypothetical protein No significant database hits gene gene1555 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1568 YPO1569 YPO1569 lctD lctD 1788598 1789743 + L-lactate dehydrogenase Similar to Escherichia coli L-lactate dehydrogenase LldD or LctD SW:LLDD_ECOLI (P33232) (396 aa) fasta scores: E(): 0%2C 83.2%25 id in 375 aa%2C and to Vibrio cholerae L-lactate dehydrogenase Vca0984 TR:Q9KKW6 (EMBL:AE004425) (378 aa) fasta scores: E(): 0%2C 81.6%25 id in 375 aa gene gene1556 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1569 YPO1570 YPO1570 argG argG 1789948 1791315 - argininosuccinate synthase Similar to Escherichia coli argininosuccinate synthase ArgG SW:ASSY_ECOLI (P22767) (446 aa) fasta scores: E(): 0%2C 90.5%25 id in 440 aa%2C and to Neisseria meningitidis argininosuccinate synthase ArgG or Nma0303 TR:Q9JWM1 (EMBL:AL162752) (447 aa) fasta scores: E(): 0%2C 80.7%25 id in 440 aa gene gene1557 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1570 YPO1571 YPO1571 yeeO yeeO 1791609 1793039 + putative sugar transporter Similar to Escherichia coli hypothetical 60.1 kDa protein in amn-cbl intergenic region YeeO SW:YEEO_ECOLI (P76352) (547 aa) fasta scores: E(): 0%2C 63.6%25 id in 470 aa%2Cand to Bacillus subtilis hypothetical 50.0 kDa protein Yisq or YucE TR:O07940 (EMBL:Y09476) (455 aa) fasta scores: E(): 0%2C 28.5%25 id in 467 aa gene gene1558 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1571 YPO1572 YPO1572 YPO1572 1793067 1794407 - putative sugar transporter Similar to Yersinia pseudotuberculosis hypothetical 13.4 kDa protein TR:Q9X9F7 (EMBL:AJ236887) (124 aa) fasta scores: E(): 0%2C 100.0%25 id in 124 aa%2C and to Pseudomonas putida benzoate transport protein BenK TR:Q9L7Y1 (EMBL:AF218267) (443 aa) fasta scores: E(): 4.8e-17%2C 25.1%25 id in 442 aa gene gene1559 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1572 YPO1573 YPO1573 YPO1573 1794443 1795351 - putative polysaccharide deacetylase Similar to Yersinia pseudotuberculosis hypothetical 33.7 kDa protein TR:Q9X9F8 (EMBL:AJ236887) (293 aa) fasta scores: E(): 0%2C 99.7%25 id in 293 aa%2C and to Helicobacter pylori conserved hypothetical protein Hp0310 TR:O25080 (EMBL:AE000549) (293 aa) fasta scores: E(): 0%2C 75.3%25 id in 292 aa gene gene1560 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1573 YPO1574 YPO1574 YPO1574 1795901 1796596 + putative exported protein Similar to Yersinia pseudotuberculosis hypothetical 26.5 kDa protein TR:Q9X9F9 (EMBL:AJ236887) (231 aa) fasta scores: E(): 0%2C 100.0%25 id in 231 aa%2C and to Plasmodium falciparum dihydropteroate synthetase TR:Q25704 (EMBL:U07706) (706 aa) fasta scores: E(): 0.32%2C 28.0%25 id in 200 aa gene gene1561 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1574 YPO1575 YPO1575 YPO1575 1796713 1797225 + conserved hypothetical protein Similar to Escherichia coli hypothetical protein YaiL SW:YAIL_ECOLI (P51024) (179 aa) fasta scores: E(): 0%2C86.5%25 id in 170 aa%2C to Yersinia enterocolitica putative nucleoprotein/polynucleotide-associated enzyme homolog TR:Q9X9H0 (EMBL:AJ132945) (131 aa) fasta scores: E(): 0%2C92.4%25 id in 131 aa%2C to Yersinia pseudotuberculosis hypothetical protein TR:Q9X9G1 (EMBL:AJ236887) (101 aa) fasta scores: E(): 3.3e-30%2C 100.0%25 id in 101 aa%2C and to Yersinia pseudotuberculosis hypothetical protein TR:Q9X9G0 (EMBL:AJ236887) (79 aa) fasta scores: E(): 4.8e-11%2C 98.1%25 id in 52 aa gene gene1562 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1575 YPO1576 YPO1576 YPO1576 1798092 1798721 - putative GerR-family transcriptional regulatory protein Similar to Escherichia coli transcriptional regulatory protein UhpA SW:UHPA_ECOLI (P10940) (196 aa) fasta scores: E(): 0%2C 48.7%25 id in 197 aa%2C and to Salmonella typhimurium transcriptional regulatory protein UhpA SW:UHPA_SALTY (P27667) (196 aa) fasta scores: E(): 0%2C 48.5%25 id in 198 aa gene gene1563 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1576 YPO1577 YPO1577 YPO1577 1798979 1800271 - putative C4-dicarboxylate transporter%2C large subunit Similar to Bacillus halodurans C4-dicarboxylate transport system Bh0703 TR:Q9KEZ6 (EMBL:AP001509) (434 aa) fasta scores: E(): 0%2C 43.6%25 id in 429 aa%2C and to Wolinella succinogenes large integral C4-dicarboxylate membrane transport protein%2C putative DctM TR:Q9ZEJ2 (EMBL:AJ132740) (415 aa) fasta scores: E(): 0%2C 39.0%25 id in 418 aa gene gene1564 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1577 YPO1578 YPO1578 YPO1578 1800291 1800797 - putative C4-dicarboxylate transporter%2C small subunit Similar to Wolinella succinogenes small integral c4-dicarboxylate membrane transport protein%2C putative dctQ TR:Q9ZEJ3 (EMBL:AJ132740) (170 aa) fasta scores: E(): 0.00071%2C 31.7%25 id in 101 aa%2C and to Bacillus halodurans c4-dicarboxylate transport system bh2672 TR:Q9K9H5 (EMBL:AP001516) (183 aa) fasta scores: E(): 2.5e-08%2C 27.3%25 id in 132 aa gene gene1565 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1578 YPO1579 YPO1579 YPO1579 1800921 1801913 - putative C4-dicarboxylate transporter%2Cperiplasmic protein Similar to Rhodobacter capsulatus C4-dicarboxylate-binding periplasmic protein precursor DctP SW:DCTP_RHOCA (P37735) (333 aa) fasta scores: E(): 2.6e-21%2C29.3%25 id in 311 aa%2C and to Wolinella succinogenes putative C4-dicarboxylate-binding periplasmic protein precursor DctP TR:Q9Z4J3 (EMBL:AJ132740) (329 aa) fasta scores: E(): 2.3e-20%2C 30.9%25 id in 265 aa gene gene1566 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1579 YPO1580 YPO1580 YPO1580 1802436 1803176 + putative phosphopantetheinyl transferase Similar to Vibrio cholerae phosphopantetheinyl transferase involved in siderophore biosynthesis%2C VibD TR:Q9RCF2 (EMBL:U52150) (237 aa) fasta scores: E(): 1.8e-11%2C 37.4%25 id in 190 aa%2C and to Pseudomonas aeruginosa PA01 hypothetical protein TR:AAG04554 (EMBL:Q9I4H2) (242 aa) fasta scores: E(): 6.9e-19%2C 38.2%25 id in 204 aa gene gene1567 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1580 YPO1581 YPO1581 rafA rafA 1803563 1805689 - alpha-galactosidase Similar to Escherichia coli alpha-galactosidase RafA SW:RAFA_ECOLI (P16551) (708 aa) fasta scores: E(): 0%2C 57.9%25 id in 705 aa%2C and to Bacillus stearothermophilus alpha-galactosidase AgaN TR:Q9X624 (EMBL:AF130985) (729 aa) fasta scores: E(): 0%2C 31.4%25 id in 710 aa gene gene1568 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1581 YPO1582 YPO1582 b0343 b0343 1805767 1806996 - lactose permease (pseudogene) This CDS is disrupted by the insertion of IS285 element. As a consequence it is lacking 19 aa at the N-terminal end. Similar to Escherichia coli lactose permease LacY or B0343 SW:LACY_ECOLI (P02920) (417 aa) fasta scores: E(): 1.5e-115%2C 68.182%25 id in 396 aa pseudogene gene1569 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1582 YPO1583 YPO1583 y1062 y1062 1807069 1808277 + transposase for the IS285 insertion element Previously sequenced Yersinia pestis transposase Y1062 or Ypmt1.80C TR:O68779 (EMBL:AF053947) (402 aa) fasta scores: E(): 0%2C 100.0%25 id in 402 aa%2C and to Escherichia coli transposase-like protein TnpA TR:AAG18473 (EMBL:AF143819) (402 aa) fasta scores: E(): 0%2C 76.1%25 id in 402 aa gene gene1570 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1583 YPO1584 YPO1584 YPO1584 1808315 1808536 - conserved hypothetical protein (pseudogene) This CDS is disrupted by the insertion of IS285 element. This insertion occurred near the C-terminal end (following codon 74)%2C replacing the C-terminal 10 aa with 24 aa encoded within the IS element. It is not clear whether this insertion affects the function of the protein. Similar to Escherichia coli hypothetical 9.7 kDa protein in solA-dinI intergenic region YceP or B1060 SW:YCEP_ECOLI (P75927) (84 aa) fasta scores: E(): 1e-20%2C 72.603%25 id in 73 aa pseudogene gene1571 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1584 YPO1585 YPO1585 YPO1585 1808703 1808843 + hypothetical protein No significant database hits gene gene1572 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1585 YPO1586 YPO1586 dinI dinI 1809042 1809287 - DNA-damage-inducible protein I Similar to Serratia marcescens DNA-damage-inducible protein I DinI SW:DINI_SERMA (Q9S3S0) (79 aa) fasta scores: E(): 1.8e-20%2C 72.8%25 id in 81 aa%2C and to Escherichia coli DNA-damage-inducible protein I SW:DINI_ECOLI (Q47143) (81 aa) fasta scores: E(): 1.1e-17%2C 63.0%25 id in 81 aa gene gene1573 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1586 YPO1587 YPO1587 b1062 b1062 1809600 1810646 - dihydroorotase Similar to Escherichia coli dihydroorotase SW:PYRC_ECOLI (P05020) (347 aa) fasta scores: E(): 0%2C 72.3%25 id in 347 aa%2C and to Salmonella typhimurium dihydroorotase SW:PYRC_SALTY (P06204) (347 aa) fasta scores: E(): 0%2C 71.8%25 id in 347 aa gene gene1574 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1587 YPO1588 YPO1588 YPO1588 1810881 1811168 + conserved hypothetical protein Similar to Neisseria meningitidis hypothetical protein NMA1764 TR:Q9JTI2 (EMBL:AL162757) (97 aa) fasta scores: E(): 3.8e-13%2C 38.7%25 id in 93 aa%2C and to Vibrio cholerae hypothetical protein VCA0636 TR:Q9KLV5 (EMBL:AE004393) (96 aa) fasta scores: E(): 3.5e-08%2C 34.8%25 id in 92 aa gene gene1575 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1588 YPO1589 YPO1589 y1062 y1062 1811445 1812653 - transposase for the IS285 insertion element Previously sequenced Yersinia pestis transposase Y1062 or Ypmt1.80C TR:O68779 (EMBL:AF053947) (402 aa) fasta scores: E(): 0%2C 100.0%25 id in 402 aa gene gene1576 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1589 YPO1590 YPO1590 ams ams 1812749 1816414 - ribonuclease E Similar to Escherichia coli ribonuclease E Rne or Ams or Hmp1 SW:RNE_ECOLI (P21513) (1061 aa) fasta scores: E(): 0%2C 60.4%25 id in 1241 aa%2C and to Vibrio cholerae ribonuclease E VC2030 TR:Q9KQG8 (EMBL:AE004277) (1052 aa) fasta scores: E(): 0%2C 50.8%25 id in 1228 aa. The N-terminal (~~first 500 aa) sequence is the most highly conserved part. Beyond that%2C this CDS%2C contains several insertions relative to other ribonucleases gene gene1577 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1590 YPO1591 YPO1591 rluC rluC 1816989 1817951 + ribosomal large subunit pseudouridine synthase C Similar to Escherichia coli ribosomal large subunit pseudouridine synthase C RluC SW:RLUC_ECOLI (P23851) (319 aa) fasta scores: E(): 0%2C 80.7%25 id in 316 aa%2C and to Haemophilus influenzae ribosomal large subunit pseudouridine synthase C Rluc or hi0412 SW:RLUC_HAEIN (P44433) (322 aa) fasta scores: E(): 0%2C 73.3%25 id in 315 aa gene gene1578 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1591 YPO1592 YPO1592 tnp tnp 1818171 1818629 + transposase for the IS1541 insertion element Similar to Salmonella typhimurium and Salmonella typhi transposase for insertion sequence IS200%2C TnpA%2CSW:TNPA_SALTY (Q57334) (152 aa) fasta scores: E(): 0%2C 93.4%25 id in 152 aa. Almost identical to the Yersinia pseudotuberculosis IS1541-like element transposase Tnp TR:Q9X9F5 (EMBL:AJ238014) (152 aa) fasta scores: E(): 0%2C99.3%25 id in 152 aa gene gene1579 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1592 YPO1593 YPO1593 YPO1593 1818784 1819380 - conserved hypothetical protein Similar to Escherichia coli hypothetical protein YceF SW:YCEF_ECOLI (P27244) (207 aa) fasta scores: E(): 0%2C67.2%25 id in 192 aa%2C and to Vibrio cholerae Maf/Ycef/Yhde family protein VC2027 TR:Q9KQH1 (EMBL:AE004277) (193 aa) fasta scores: E(): 0%2C 57.4%25 id in 188 aa gene gene1580 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1593 YPO1594 YPO1594 YPO1594 1819522 1820046 + conserved hypothetical protein Similar to Escherichia coli hypothetical protein Yced or G30K SW:YCED_ECOLI (P14189) (173 aa) fasta scores: E(): 0%2C 79.7%25 id in 172 aa%2C and to Haemophilus influenzae hypothetical protein HI0159 SW:YCED_HAEIN (P43790) (174 aa) fasta scores: E(): 0%2C 55.5%25 id in 173 aa gene gene1581 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1594 YPO1595 YPO1595 rpmF rpmF 1820059 1820226 + 50S ribosomal protein L32 Similar to Escherichia coli%2C and Salmonella typhimurium 50S ribosomal protein L32 SW:RL32_ECOLI (P02435) (56 aa) fasta scores: E(): 3.4e-20%2C 90.7%25 id in 54 aa%2C and to Haemophilus influenzae 50S ribosomal protein L32 RpmF or Rpl32 or Hi0158 SW:RL32_HAEIN (P44368) (55 aa) fasta scores: E(): 4.3e-19%2C 83.0%25 id in 53 aa gene gene1582 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1595 YPO1596 YPO1596 plsX plsX 1820260 1821294 + fatty acid/phospholipid synthesis protein Similar to Salmonella typhimurium fatty acid/phospholipid synthesis protein PlsX SW:PLSX_SALTY (O85138) (359 aa) fasta scores: E(): 0%2C 80.8%25 id in 338 aa%2Cand to Escherichia coli fatty acid/phospholipid synthesis protein PlsX SW:PLSX_ECOLI (P27247) (356 aa) fasta scores: E(): 0%2C 80.5%25 id in 338 aa gene gene1583 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1596 YPO1597 YPO1597 fabH fabH 1821301 1822251 + 3-oxoacyl-[acyl-carrier-protein] synthase III Similar to Escherichia coli 3-oxoacyl-[acyl-carrier-protein] synthase III SW:FABH_ECOLI (P24249) (317 aa) fasta scores: E(): 0%2C 81.1%25 id in 317 aa%2Cand to Salmonella typhimurium 3-oxoacyl-[acyl-carrier-protein] synthase III SW:FABH_SALTY (O85139) (317 aa) fasta scores: E(): 0%2C 82.0%25 id in 317 aa gene gene1584 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1597 YPO1598 YPO1598 fabD fabD 1822289 1823218 + malonyl CoA-acyl carrier protein transacylase Similar to Escherichia coli malonyl CoA-acyl carrier protein transacylase FabD or TfpA SW:FABD_ECOLI (P25715) (308 aa) fasta scores: E(): 0%2C 78.5%25 id in 307 aa%2C and to Salmonella typhimurium malonyl CoA-acyl carrier protein transacylase SW:FABD_SALTY (O85140) (308 aa) fasta scores: E(): 0%2C 79.7%25 id in 306 aa gene gene1585 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1598 YPO1599 YPO1599 fabG fabG 1823232 1823966 + 3-oxoacyl-[acyl-carrier protein] reductase Similar to Escherichia coli 3-oxoacyl-[acyl-carrier protein] reductase FabG SW:FABG_ECOLI (P25716) (244 aa) fasta scores: E(): 0%2C 86.9%25 id in 244 aa%2C and to Salmonella typhimurium 3-oxoacyl-[acyl-carrier protein] reductase SW:FABG_SALTY (O85141) (244 aa) fasta scores: E(): 0%2C 88.9%25 id in 244 aa gene gene1586 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1599 YPO1600 YPO1600 acpP acpP 1824120 1824356 + acyl carrier protein Similar to Escherichia coli acyl carrier protein SW:ACP_ECOLI (P02901) (77 aa) fasta scores: E(): 2.7e-21%2C89.5%25 id in 76 aa%2C and to Vibrio cholerae acyl carrier protein Vc2020 TR:Q9KQH8 (EMBL:AE004276) (110 aa) fasta scores: E(): 2.3e-21%2C 87.2%25 id in 78 aa gene gene1587 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1600 YPO1601 YPO1601 fabF fabF 1824451 1825692 + 3-oxoacyl-[acyl-carrier-protein] synthase II Similar to Escherichia coli 3-oxoacyl-[acyl-carrier-protein] synthase II FabF or FabJ SW:FABF_ECOLI (P39435) (412 aa) fasta scores: E(): 0%2C 89.3%25 id in 412 aa%2C and to Photobacterium profundum beta-ketoacyl-acyl carrier protein synthase II FabF TR:Q9R6Z2 (EMBL:AF188707) (413 aa) fasta scores: E(): 0%2C74.8%25 id in 413 aa. Similar to YPO1425 (52.0%25 identity in 323 aa overlap) gene gene1588 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1601 YPO1602 YPO1602 tnp tnp 1825892 1826350 + transposase for the IS1541 insertion element Similar to Salmonella typhimurium%2C and Salmonella typhi transposase for insertion sequence IS200 TnpA SW:T200_SALTY (Q57334) (152 aa) fasta scores: E(): 0%2C 94.1%25 id in 152 aa. Identical to the Yersinia pseudotuberculosis IS1541-like element transposase Tnp TR:Q9X9F5 (EMBL:AJ238014) (152 aa) fasta scores: E(): 0%2C 100.0%25 id in 152 aa gene gene1589 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1602 YPO1603 YPO1603 pabC pabC 1826766 1827572 + 4-amino-4-deoxychorismate lyase Similar to Escherichia coli 4-amino-4-deoxychorismate lyase SW:PABC_ECOLI (P28305) (269 aa) fasta scores: E(): 0%2C 56.6%25 id in 265 aa%2C and to Vibrio harveyi 4-amino-4-deoxychorismate lyase SW:PABC_VIBHA (Q56693) (271 aa) fasta scores: E(): 0%2C 40.5%25 id in 247 aa gene gene1590 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1603 YPO1604 YPO1604 yceG yceG 1827861 1828886 + putative exported protein Similar to Escherichia coli hypothetical 38.2 kDa protein in pabC-holB intergenic region YceG SW:YCEG_ECOLI (P28306) (340 aa) fasta scores: E(): 0%2C 62.8%25 id in 339 aa%2Cand to Haemophilus influenzae hypothetical protein Hi0457 SW:YCEG_HAEIN (P44720) (347 aa) fasta scores: E(): 0%2C 48.6%25 id in 346 aa gene gene1591 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1604 YPO1605 YPO1605 tmk tmk 1828876 1829514 + thymidylate kinase Similar to the previously sequenced Yersinia pestis thymidylate kinase TmK SW:KTHY_YERPE (O69169) (212 aa) fasta scores: E(): 0%2C 100.0%25 id in 212 aa%2C and to Escherichia coli thymidylate kinase SW:KTHY_ECOLI (P37345) (213 aa) fasta scores: E(): 0%2C 71.2%25 id in 208 aa gene gene1592 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1605 YPO1606 YPO1606 holB holB 1829514 1830536 + DNA polymerase III%2C delta' subunit Similar to Escherichia coli DNA polymerase III%2Cdelta' subunit HolB SW:HOLB_ECOLI (P28631) (334 aa) fasta scores: E(): 0%2C 51.5%25 id in 342 aa%2C and to Haemophilus influenzae DNA polymerase III%2C delta' subunit HolB or Hi0455 SW:HOLB_HAEIN (P43748) (327 aa) fasta scores: E(): 0%2C 39.8%25 id in 319 aa gene gene1593 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1606 YPO1607 YPO1607 YPO1607 1830551 1831360 + putative deoxyribonuclease Similar to Escherichia coli hypothetical protein%2Cputative deoxyribonuclease%2C Ycfh SW:YCFH_ECOLI (P37346) (265 aa) fasta scores: E(): 0%2C 76.0%25 id in 263 aa%2C and to Haemophilus influenzae hypothetical protein HI0454%2Cputative deoxyribonuclease%2C HI0454 SW:YCFH_HAEIN (P44718) (260 aa) fasta scores: E(): 0%2C 57.2%25 id in 257 aa gene gene1594 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1607 YPO1608 YPO1608 glcA glcA 1831666 1833099 + PTS system%2C glucose-specific IIBC component Similar to Escherichia coli PTS system%2Cglucose-specific IIBC component Ptsg or Glca or UmG SW:PTGB_ECOLI (P05053) (477 aa) fasta scores: E(): 0%2C 90.4%25 id in 477 aa%2C and to Salmonella typhimurium PTS system%2Cglucose-specific IIBC component PtsG SW:PTGB_SALTY (P37439) (477 aa) fasta scores: E(): 0%2C 88.7%25 id in 477 aa gene gene1595 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1608 YPO1609 YPO1609 tnp tnp 1833289 1833747 + transposase for the IS1541 insertion element Similar to Salmonella typhimurium and Salmonella typhi transposase for insertion sequence IS200%2C TnpA%2CSW:TNPA_SALTY (Q57334) (152 aa) fasta scores: E(): 0%2C 93.4%25 id in 152 aa. Almost identical to the Yersinia pseudotuberculosis IS1541-like element transposase Tnp TR:Q9X9F5 (EMBL:AJ238014) (152 aa) fasta scores: E(): 0%2C99.3%25 id in 152 aa gene gene1596 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1609 YPO1610 YPO1610 YPO1610 1834130 1835008 + putative shikimate dehydrogenase Similar to Neisseria meningitidis shikimate dehydrogenase AroE TR:P95381 (EMBL:U82834) (269 aa) fasta scores: E(): 1.3e-08%2C 26.4%25 id in 239 aa%2C and to Deinococcus radiodurans shikimate 5-dehydrogenase%2C putative Dr0077 TR:Q9RY73 (EMBL:AE001871) (273 aa) fasta scores: E(): 0%2C 57.7%25 id in 267 aa gene gene1597 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1610 YPO1611 YPO1611 YPO1611 1835182 1835535 + conserved hypothetical protein Similar to Escherichia coli protein HIT-like protein YcfF SW:YCFF_ECOLI (P36950) (119 aa) fasta scores: E(): 0%2C 84.6%25 id in 117 aa%2C and to Gallus gallus protein kinase C inhibitor ChpKCI TR:Q9I882 (EMBL:AB026676) (126 aa) fasta scores: E(): 1.3e-18%2C 46.3%25 id in 108 aa gene gene1598 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1611 YPO1612 YPO1612 ycfL ycfL 1835570 1835959 + putative lipoprotein Similar to Escherichia coli hypothetical 14.0 kDa protein in fhuE-ndh intergenic region YcfL SW:YCFL_ECOLI (P75946) (125 aa) fasta scores: E(): 1.5e-14%2C 45.5%25 id in 110 aa%2C and to Vibrio cholerae hypothetical protein Vc1895 TR:Q9KQV3 (EMBL:AE004265) (129 aa) fasta scores: E(): 0.0016%2C 30.3%25 id in 122 aa gene gene1599 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1612 YPO1613 YPO1613 YPO1613 1836000 1836575 + putative lipoprotein Similar to Escherichia coli fibronectin-binding protein B TR:Q9R424 (EMBL:D90746) (214 aa) fasta scores: E(): 3e-25%2C 48.3%25 id in 207 aa%2C and to Escherichia coli hypothetical 22.5 kDa protein in fhue-ndh intergenic region ycfM SW:YCFM_ECOLI (P75947) (213 aa) fasta scores: E(): 3e-25%2C 48.3%25 id in 207 aa gene gene1600 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1613 YPO1614 YPO1614 YPO1614 1836616 1837422 + conserved hypothetical protein Similar to Escherichia coli hypothetical protein YcfN SW:YCFN_ECOLI (P75948) (274 aa) fasta scores: E(): 1e-26%2C 37.5%25 id in 251 aa gene gene1601 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1614 YPO1615 YPO1615 ycfO ycfO 1837493 1838524 + beta-hexosaminidase Similar to Vibrio furnissii beta-hexosaminidase Exo II SW:HEX2_VIBFU (P96157) (329 aa) fasta scores: E(): 0%2C58.6%25 id in 338 aa%2C and to Escherichia coli hypothetical 37.6 kDa protein in fhue-ndh intergenic region YcfO SW:YCFO_ECOLI (P75949) (341 aa) fasta scores: E(): 0%2C 76.3%25 id in 338 aa gene gene1602 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1615 YPO1616 YPO1616 YPO1616 1838652 1839194 + conserved hypothetical protein Similar to Escherichia coli hypothetical protein YcfP SW:YCFP_ECOLI (P75950) (199 aa) fasta scores: E(): 0%2C80.0%25 id in 180 aa%2C and to Vibrio cholerae hypothetical protein VC1892 TR:Q9KQV6 (EMBL:AE004265) (179 aa) fasta scores: E(): 0%2C 72.9%25 id in 177 aa gene gene1603 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1616 YPO1617 YPO1617 ndh ndh 1839569 1840873 + NADH dehydrogenase Similar to Escherichia coli NADH dehydrogenase Ndh SW:DHNA_ECOLI (P00393) (433 aa) fasta scores: E(): 0%2C 82.2%25 id in 433 aa%2C and to Vibrio cholerae NADH dehydrogenase VC1890 TR:Q9KQV8 (EMBL:AE004264) (434 aa) fasta scores: E(): 0%2C 73.6%25 id in 428 aa gene gene1604 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1617 YPO1618 YPO1618 YPO1618 1841044 1841238 + hypothetical protein doubtful CDS with no significant database hits. Very low G+C conent gene gene1605 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1618 YPO1619 YPO1619 YPO1619 1841411 1841980 + hypothetical protein No significant database hits. Similar to YPO3066 (53.0%25 identity in 166 aa overlap) gene gene1606 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1619 YPO1620 YPO1620 YPO1620 1841988 1842401 + hypothetical protein No significant database hits gene gene1607 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1620 YPO1621 YPO1621 y1062 y1062 1842497 1843705 + transposase for the IS285 insertion element Previously sequenced Yersinia pestis transposase Y1062 or Ypmt1.80C TR:O68779 (EMBL:AF053947) (402 aa) fasta scores: E(): 0%2C 100.0%25 id in 402 aa gene gene1608 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1621 YPO1622 YPO1622 ypmt1.57c ypmt1.57c 1844089 1844871 - insertion sequence IS100%2C ATP-binding protein Similar to Escherichia coli insertion sequence IS21 putative ATP-binding protein%2C IstB SW:ISTB_ECOLI (P15026) (265 aa) fasta scores: E(): 0%2C 47.4%25 id in 249 aa. Also almost identical to Yersinia pestis and Escherichia coli putative IS100 transposase ypmt1.57c TR:Q9R3L5 (EMBL:AL117211) (260 aa) fasta scores: E(): 0%2C 99.6%25 id in 260 aa. gene gene1609 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1622 YPO1623 YPO1623 y1093 y1093 1844868 1845890 - transposase for insertion sequence IS100 Similar to Escherichia coli transposase for insertion sequence element IS21 IstA SW:ISTA_ECOLI (P15025) (390 aa) fasta scores: E(): 3e-27%2C 33.1%25 id in 329 aa. Identical to the previously sequenced Yersinia pestis%2CYersinia pseudotuberculosis%2C and Escherichia coli pesticin plasmid insertion sequence transposase Y1055 TR:P74993 (EMBL:U59875) (340 aa) fasta scores: E(): 0%2C 100.0%25 id in 340 aa gene gene1610 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1623 YPO1624 YPO1624 ycfJ ycfJ 1845995 1846534 + putative exported protein Similar to Escherichia coli hypothetical 18.9 kDa protein in ndh-mfd intergenic region YcfJ SW:YCFJ_ECOLI (P37796) (179 aa) fasta scores: E(): 0%2C 79.8%25 id in 178 aa%2Cand to Pseudomonas aeruginosa TR:AAG07206 (Q9HXI3) (182 aa) fasta scores: E(): 0%2C 56.8%25 id in 176 aa gene gene1611 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1624 YPO1625 YPO1625 mfd mfd 1846773 1850219 - transcription-repair coupling factor Similar to Escherichia coli transcription-repair coupling factor MfD SW:MFD_ECOLI (P30958) (1148 aa) fasta scores: E(): 0%2C 80.6%25 id in 1148 aa%2C and to Haemophilus influenzae transcription-repair coupling factor Mfd or Hi1258 SW:MFD_HAEIN (P45128) (1146 aa) fasta scores: E(): 0%2C 64.0%25 id in 1141 aa gene gene1612 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1625 YPO1626 YPO1626 lolC lolC 1850489 1851691 + lipoprotein releasing system%2C transmembrane protein Similar to Escherichia coli lipoprotein releasing system transmembrane protein LolC SW:LOLC_ECOLI (P75956) (399 aa) fasta scores: E(): 0%2C 78.5%25 id in 400 aa%2C and to Vibrio cholerae hypothetical protein Vc1884 TR:Q9KQW4 (EMBL:AE004263) (406 aa) fasta scores: E(): 0%2C 53.2%25 id in 402 aa gene gene1613 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1626 YPO1627 YPO1627 lolD lolD 1851684 1852388 + lipoprotein releasing system%2C ATP-binding protein Similar to Escherichia coli lipoprotein releasing system ATP-binding protein LolD SW:LOLD_ECOLI (P75957) (233 aa) fasta scores: E(): 0%2C 79.3%25 id in 232 aa%2C and to Escherichia coli hypothetical ABC transporter ATP-binding protein YcfV SW:YCFV_ECOLI (P75957) (233 aa) fasta scores: E(): 0%2C 79.3%25 id in 232 aa gene gene1614 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1627 YPO1628 YPO1628 lolE lolE 1852385 1853635 + lipoprotein releasing system%2C transmembrane protein Similar to Escherichia coli lipoprotein releasing system transmembrane protein LolE SW:LOLE_ECOLI (P75958) (413 aa) fasta scores: E(): 0%2C 79.6%25 id in 411 aa gene gene1615 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1628 YPO1629 YPO1629 YPO1629 1853654 1854424 + conserved hypothetical protein Similar to Escherichia coli hypothetical protein YcfX SW:YCFX_ECOLI (P75959) (303 aa) fasta scores: E(): 0%2C61.2%25 id in 255 aa%2C and to Vibrio cholerae ROK family protein VC1532 TR:Q9KRV2 (EMBL:AE004231) (302 aa) fasta scores: E(): 0%2C 55.0%25 id in 242 aa gene gene1616 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1629 YPO1630 YPO1630 cobB cobB 1854618 1855454 + putative Sir2 family protein Similar to Salmonella typhimurium putative nicotinic acid mononucleotide:5%2C 6- dimethylbenzimidazole CobB TR:AAC78722 (EMBL:U89687) (237 aa) fasta scores: E(): 0%2C73.4%25 id in 233 aa%2C and to Escherichia coli hypothteical protein TR:P75960 (EMBL:AE000212) (279 aa) fasta scores: E(): 0%2C 73.9%25 id in 264 aa gene gene1617 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1630 YPO1631 YPO1631 pepT pepT 1855784 1857019 + peptidase T Similar to Salmonella typhimurium peptidase T PepT SW:PEPT_SALTY (P26311) (409 aa) fasta scores: E(): 0%2C 76.5%25 id in 409 aa%2C and to Escherichia coli peptidase T PepT SW:PEPT_ECOLI (P29745) (408 aa) fasta scores: E(): 0%2C 76.9%25 id in 407 aa gene gene1618 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1631 YPO1632 YPO1632 YPO1632 1857252 1858373 - conserved hypothetical protein Similar to Escherichia coli hypothetical protein YcfD SW:YCFD_ECOLI (P27431) (373 aa) fasta scores: E(): 0%2C79.2%25 id in 371 aa%2C and to Pseudomonas aeruginosa conserved hypothetical protein PA2630 TR:AAG06018 (Q9I0K8) (389 aa) fasta scores: E(): 0%2C 36.9%25 id in 374 aa gene gene1619 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1632 YPO1633 YPO1633 phoQ phoQ 1858457 1859911 - sensor protein kinase Similar to Escherichia coli membrane bound two component sensor protein PhoQ SW:PHOQ_ECOLI (P23837) (486 aa) fasta scores: E(): 0%2C 62.1%25 id in 478 aa%2C and to Salmonella typhimurium PhoQ protein TR:Q9L3L1 (EMBL:AJ272210) (487 aa) fasta scores: E(): 0%2C 62.4%25 id in 473 aa gene gene1620 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1633 YPO1634 YPO1634 phoP phoP 1859917 1860588 - response regulator protein Similar to the previously sequenced Yersinia pestis PhoP protein TR:P74992 (EMBL:Y08758) (223 aa) fasta scores: E(): 0%2C 100.0%25 id in 223 aa%2C to Yersinia pseudotuberculosis PhoP protein TR:P74991 (EMBL:X66587) (223 aa) fasta scores: E(): 0%2C 99.1%25 id in 223 aa%2C to Yersinia enterocolitica PhoP protein TR:O87919 (EMBL:AJ011832) (200 aa) fasta scores: E(): 0%2C 98.5%25 id in 200 aa%2C and to Escherichia coli transcriptional regulatory protein PhoP SW:PHOP_ECOLI (P23836) (223 aa) fasta scores: E(): 0%2C 81.1%25 id in 222 aa gene gene1621 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1634 YPO1635 YPO1635 YPO1635 1860799 1861422 - putative lipoprotein weak similarity to Burkholderia cepacia Opcp1 TR:Q45106 (EMBL:D63823) (361 aa) fasta scores: E(): 0.081%2C25.4%25 id in 201 aa%2C and to Neisseria gonorrhoeae opacity protein Opa68 precursor SW:OP68_NEIGO (Q04881) (238 aa) fasta scores: E(): 0.16%2C 28.3%25 id in 138 aa gene gene1622 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1635 YPO1636 YPO1636 purB purB 1861610 1862980 - adenylosuccinate lyase Similar to Escherichia coli adenylosuccinate lyase PurB SW:PUR8_ECOLI (P25739) (456 aa) fasta scores: E(): 0%2C88.6%25 id in 456 aa%2C and to Vibrio cholerae adenylosuccinate lyase Vc1126 TR:Q9KSY0 (EMBL:AE004193) (456 aa) fasta scores: E(): 0%2C 78.5%25 id in 456 aa gene gene1623 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1636 YPO1637 YPO1637 YPO1637 1863041 1863667 - conserved hypothetical protein Similar to Escherichia coli hypothetical protein YcfC SW:YCFC_ECOLI (P25746) (213 aa) fasta scores: E(): 0%2C75.5%25 id in 208 aa%2C and to Vibrio cholerae hypothetical protein VC1127 TR:Q9KSX9 (EMBL:AE004193) (205 aa) fasta scores: E(): 0%2C 55.3%25 id in 206 aa gene gene1624 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1637 YPO1638 YPO1638 asuE asuE 1863725 1864840 - tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase Similar to to Escherichia coli tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase TrmU or AsuE SW:TRMU_ECOLI (P25745) (368 aa) fasta scores: E(): 0%2C 86.6%25 id in 367 aa and Bacillus subtilis probable tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase TrmU SW:TRMU_BACSU (O35020) (370 aa) fasta scores: E(): 0%2C54.0%25 id in 367 aa gene gene1625 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1638 YPO1639 YPO1639 YPO1639 1865027 1865473 - conserved hypothetical protein Similar to Escherichia coli hypothetical protein YmfB SW:YMFB_ECOLI (P75965) (153 aa) fasta scores: E(): 0%2C75.0%25 id in 148 aa%2C to Pseudomonas hydrogenothermophila MutT-like protein TR:Q9WXC6 (EMBL:AB018741) (159 aa) fasta scores: E(): 3.4e-18%2C 43.1%25 id in 144 aa%2C and to Xylella fastidiosa phosphohydrolase XF1441 TR:Q9PDD8 (EMBL:AE003974) (152 aa) fasta scores: E(): 1.2e-16%2C 43.3%25 id in 141 aa gene gene1626 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1639 YPO1640 YPO1640 ymfC ymfC 1865466 1866092 - putative pseudouridine synthase Similar to Escherichia coli hypothetical 24.9 kDa protein in trmU-icdA intergenic region YmfC SW:YMFC_ECOLI (P75966) (217 aa) fasta scores: E(): 0%2C 73.4%25 id in 207 aa%2Cand to Vibrio cholerae pseudouridine synthase family I protein Vc1140 TR:Q9KSW6 (EMBL:AE004194) (290 aa) fasta scores: E(): 0%2C 64.4%25 id in 205 aa gene gene1627 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1640 YPO1641 YPO1641 icd icd 1866223 1867476 + isocitrate dehydrogenase [NADP] Similar to Escherichia coli isocitrate dehydrogenase [NADP] SW:IDH_ECOLI (P08200) (416 aa) fasta scores: E(): 0%2C90.2%25 id in 417 aa%2C and to Salmonella enterica I isocitrate dehydrogenase Icd TR:O30811 (EMBL:AF017605) (388 aa) fasta scores: E(): 0%2C 92.7%25 id in 386 aa gene gene1628 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1641 YPO1642 YPO1642 cscR cscR 1867622 1868665 - sucrose operon repressor LacI-family Similar to Escherichia coli sucrose operon repressor CscR SW:CSCR_ECOLI (P40715) (331 aa) fasta scores: E(): 0%2C60.0%25 id in 330 aa%2C and to Salmonella typhimurium CytR TR:Q9XDC7 (EMBL:AF085239) (341 aa) fasta scores: E(): 1.8e-20%2C 28.2%25 id in 340 aa gene gene1629 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1642 YPO1643 YPO1643 YPO1643 1868941 1869201 - hypothetical protein No significant database hits gene gene1630 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1643 YPO1644 YPO1644 aer aer 1869321 1870901 - putative methyl-accepting chemotaxis protein Similar to Escherichia coli aerotaxis receptor Aer or Air SW:AER_ECOLI (P50466) (506 aa) fasta scores: E(): 0%2C47.1%25 id in 514 aa%2C and to Escherichia coli methyl-accepting chemotaxis protein II Tar or CheM SW:MCP2_ECOLI (P07017) (553 aa) fasta scores: E(): 0%2C 43.3%25 id in 360 aa gene gene1631 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1644 YPO1645 YPO1645 YPO1645 1871821 1872678 - conserved hypothetical protein Similar to Escherichia coli hypothetical protein YtfG SW:YTFG_ECOLI (P39315) (286 aa) fasta scores: E(): 0%2C65.6%25 id in 279 aa%2C and to Xylella fastidiosa hypothetical protein XF0241 TR:Q9PGQ7 (EMBL:AE003878) (293 aa) fasta scores: E(): 0%2C 57.6%25 id in 283 aa gene gene1632 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1645 YPO1646 YPO1646 YPO1646 1872838 1873221 + conserved hypothetical protein Similar to Escherichia coli hypothetical protein YtfH SW:YTFH_ECOLI (P39316) (126 aa) fasta scores: E(): 2.2e-29%2C 62.3%25 id in 122 aa%2C and to Streptomyces coelicolor hypothetical protein SC1F2.10 TR:O86547 (EMBL:AL031350) (135 aa) fasta scores: E(): 1.3e-15%2C 38.6%25 id in 127 aa gene gene1633 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1646 YPO1647 YPO1647 YPO1647 1873255 1873452 + putative cytochrome B (fragment) Similar to many cytochrome B fragments found in various genetic backgrounds: Urocampus carinirostris cytochrome B (fragment) CytB TR:Q9MI83 (EMBL:AF155468) (100 aa) fasta scores: E(): 1.5%2C 32.3%25 id in 65 aa%2C and to Apistogramma caetei cytochrome B (fragment) CytB TR:CAC16341 (EMBL:AJ297670) (115 aa) fasta scores: E(): 2%2C34.3%25 id in 67 aa pseudogene gene1634 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1647 YPO1648 YPO1648 YPO1648 1873753 1875078 + probable histidine acid phosphatase Similar to Escherichia coli periplasmic phosphoanhydride phosphohydrolase precursor SW:PPA_ECOLI (P07102) (432 aa) fasta scores: E(): 0%2C 45.2%25 id in 427 aa%2Cand to Escherichia coli glucose-1-phosphatase precursor agP SW:AGP_ECOLI (P19926) (413 aa) fasta scores: E(): 1.1e-17%2C30.3%25 id in 432 aa gene gene1635 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1648 YPO1649 YPO1649 YPO1649 1875380 1875595 - conserved hypothetical protein Similar to Escherichia coli hypothetical protein YdfZ SW:YDFZ_ECOLI (P76153) (67 aa) fasta scores: E(): 8e-06%2C 41.3%25 id in 63 aa gene gene1636 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1649 YPO1650 YPO1650 YPO1650 1875886 1876788 - hypothetical protein Weakly similar to Mycobacterium tuberculosis phosphoribosylamine--glycine ligase PurD or RV0772 or MTCY369.17 SW:PUR2_MYCTU (P71827) (422 aa) fasta scores: E(): 3.8%2C 24.2%25 id in 165 aa gene gene1637 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1650 YPO1651 YPO1651 YPO1651 1876877 1877326 - AsnC-family transcriptional regulatory protein Similar to Bacillus subtilis transcriptional regulator LrpB SW:LRPB_BACSU (P96653) (149 aa) fasta scores: E(): 6.8e-08%2C 27.1%25 id in 118 aa%2C and to Pseudomonas aeruginosa TR:AAG05965 (EMBL:AE004686) (145 aa) fasta scores: E(): 3.5e-28%2C 53.5%25 id in 142 aa gene gene1638 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1651 YPO1652 YPO1652 ylaC ylaC 1877817 1878350 - putative membrane protein Similar to Escherichia coli hypothetical 19.8 kDa protein in tesB-hha intergenic region YlaC SW:YLAC_ECOLI (P77523) (169 aa) fasta scores: E(): 7.8e-19%2C 34.4%25 id in 151 aa gene gene1639 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1652 YPO1653 YPO1653 YPO1653 1878633 1879643 - probable Zinc-binding dehydrogenase Similar to Cavia porcellus quinone oxidoreductase SW:QOR_CAVPO (P11415) (329 aa) fasta scores: E(): 5.5e-28%2C33.3%25 id in 327 aa%2C and to Pseudomonas aeruginosa probable oxidoreductase TR:AAG04526 (Q9I4J8) (328 aa) fasta scores: E(): 0%2C 62.3%25 id in 326 aa gene gene1640 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1653 YPO1654 YPO1654 lacZ lacZ 1880050 1883232 - beta-galactosidase Similar to Escherichia coli beta-galactosidase LacZ SW:BGAL_ECOLI (P00722) (1023 aa) fasta scores: E(): 0%2C62.5%25 id in 1046 aa%2C and to Enterobacter cloacae beta-galactosidase lacZ SW:BGAL_ENTCL (Q47077) (1028 aa) fasta scores: E(): 0%2C 60.4%25 id in 1046 aa gene gene1641 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1654 YPO1655 YPO1655 cspC cspC 1883773 1883985 + cold shock protein Similar to Escherichia coli cold shock-like protein CspC or MsmB SW:CSPC_ECOLI (P36996) (68 aa) fasta scores: E(): 4.9e-23%2C 84.8%25 id in 66 aa%2C and to Yersinia enterocolitica major cold shock protein Cspa2 TR:Q9RIF1 (EMBL:U82821) (70 aa) fasta scores: E(): 4.2e-22%2C 80.0%25 id in 70 aa gene gene1642 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1655 YPO1656 YPO1656 YPO1656 1884200 1884391 + conserved hypothetical protein Similar to Escherichia coli DsrB protein or B1952 SW:DSRB_ECOLI (P40678) (62 aa) fasta scores: E(): 7.2e-20%2C83.1%25 id in 59 aa gene gene1643 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1656 YPO1657 YPO1657 cheM cheM 1884574 1886275 - methyl-accepting chemotaxis protein (pseudogene) This CDS appears to have a frameshift mutation following codon 409. The full length CDS is similar to Escherichia coli methyl-accepting chemotaxis protein II Tar or CheM SW:MCP2_ECOLI (P07017) (553 aa) fasta scores: E(): 0%2C 44.2%25 id in 563 aa. pseudogene gene1644 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1657 YPO1658 YPO1658 YPO1658 1886135 1886200 - gene gene1646 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1658 YPO1658 YPO1658 YPO1658 1885598 1885663 - gene gene1645 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1658 YPO1659 YPO1659 YPO1659 1886912 1887082 + hypothetical protein No significant database hits gene gene1647 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1659 YPO1660 YPO1660 mgtC mgtC 1887422 1888132 + Mg(2+) transport ATPase protein C Similar to Salmonella typhimurium Mg(2+) transport ATPase protein C MgtC%2C important for macrophage survival SW:ATMC_SALTY (P22037) (231 aa) fasta scores: E(): 0%2C 63.1%25 id in 233 aa%2C and to Pseudomonas aeruginosa conserved hypothetical protein TR:AAG08023 (Q9HVF9) (234 aa) fasta scores: E(): 0%2C 54.1%25 id in 229 aa gene gene1648 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1660 YPO1661 YPO1661 mgtB mgtB 1888533 1891232 + Mg(2+) transport ATPase protein B Similar to Salmonella typhimurium Mg2+ transport ATPase protein B%2C MgtB important for macrophage survival TR:Q9S682 (EMBL:AF106566) (908 aa) fasta scores: E(): 0%2C72.4%25 id in 901 aa%2C and to Pseudomonas aeruginosa Mg2+ transport ATPase TR:AAG08210 (Q9HUY5) (903 aa) fasta scores: E(): 0%2C 74.8%25 id in 894 aa gene gene1649 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1661 YPO1662 YPO1662 flhD flhD 1892411 1892771 + flagellar biosynthesis regulatory protein (pseudogene) Similar to Yersinia enterocolitica flagellar biosynthesis regulatory protein FlhD SW:FLHD_YEREN (O86046) (119 aa) fasta scores: E(): 0%2C 95.8%25 id in 119 aa%2C and to Serratia marcescens flagellar transcriptional activator FlhD SW:FLHD_SERMA (O85806) (119 aa) fasta scores: E(): 0%2C84.9%25 id in 119 aa. This CDS appears to have a frameshift following codon 83. The sequence has been checked and is believed to be correct pseudogene gene1650 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1662 YPO1663 YPO1663 flhC flhC 1892772 1893356 + flagellum biosynthesis transcription activator Similar to the previously sequenced Yersinia pestis flagellum biosynthesis transcription activator FlhC TR:Q9S474 (EMBL:AF160510) (193 aa) fasta scores: E(): 0%2C100.0%25 id in 193 aa%2C and to Yersinia enterocolitica flagellar transcriptional activator FlhC SW:FLHC_YEREN (O86047) (193 aa) fasta scores: E(): 0%2C 95.9%25 id in 193 aa gene gene1651 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1663 YPO1664 YPO1664 motA motA 1893561 1894448 + chemotaxis MotA protein Similar to Escherichia coli chemotaxis MotA protein SW:MOTA_ECOLI (P09348) (295 aa) fasta scores: E(): 0%2C 81.0%25 id in 295 aa%2C and to Salmonella typhimurium chemotaxis MotA protein SW:MOTA_SALTY (P55891) (295 aa) fasta scores: E(): 0%2C 82.0%25 id in 295 aa gene gene1652 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1664 YPO1665 YPO1665 motB motB 1894445 1895728 + chemotaxis MotB protein Similar to Escherichia coli chemotaxis MotB protein SW:MOTB_ECOLI (P09349) (308 aa) fasta scores: E(): 0%2C 68.8%25 id in 311 aa%2C and to Salmonella typhimurium chemotaxis MotB protein SW:MOTB_SALTY (P55892) (309 aa) fasta scores: E(): 0%2C 67.9%25 id in 312 aa. Note that this CDS is 119 aa longer%2Cat the C-terminal end%2C than the MotB protein gene gene1653 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1665 YPO1666 YPO1666 cheA cheA 1895739 1897910 + chemotaxis protein CheA Similar to Escherichia coli chemotaxis regulatory protein CheA SW:CHEA_ECOLI (P07363) (654 aa) fasta scores: E(): 0%2C 69.8%25 id in 716 aa%2C and to Salmonella typhimurium chemotaxis protein CheA SW:CHEA_SALTY (P09384) (671 aa) fasta scores: E(): 0%2C 72.2%25 id in 716 aa. This CDS contains internal insertions relative to that of E.coli and S. typhimurium gene gene1654 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1666 YPO1667 YPO1667 cheW cheW 1898073 1898570 + chemotaxis protein CheW Similar to Escherichia coli chemotaxis regulatory protein CheW SW:CHEW_ECOLI (P07365) (167 aa) fasta scores: E(): 0%2C 84.0%25 id in 163 aa%2C and to Salmonella typhimurium chemotaxis protein CheW SW:CHEW_SALTY (P06110) (167 aa) fasta scores: E(): 0%2C 84.4%25 id in 160 aa gene gene1655 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1667 YPO1668 YPO1668 yihN yihN 1898862 1900097 - putative membrane protein Similar to Escherichia coli hypothetical 46.3 kDa protein in glnA-rbn intergenic region yihN SW:YIHN_ECOLI (P32135) (421 aa) fasta scores: E(): 0%2C 48.5%25 id in 406 aa%2Cand to the previously sequenced Yersinia pestis hypothetical protein TR:Q9ZC42 (EMBL:AL031866) (409 aa) fasta scores: E(): 6.4e-07%2C 23.6%25 id in 406 aa. Also similar to several membrane transport proteins. gene gene1656 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1668 YPO1669 YPO1669 YPO1669 1900110 1900487 - YjgF-family lipoprotein Similar to Salmonella typhimurium YjgF TR:Q9X445 (EMBL:AF095578) (128 aa) fasta scores: E(): 1.1e-21%2C 54.5%25 id in 121 aa%2C and to Escherichia coli protein YjgF SW:YJGF_ECOLI (P39330) (127 aa) fasta scores: E(): 8e-22%2C55.4%25 id in 121 aa. Similar to YPO3590 (55.4%25 identity in 121 aa overlap). In S. typhimurium YjgF mutants do not require the pentose phosphate pathway for the function of the alternative pyrimidine biosynthetic pathway. J Bacteriol 1998%2C 180(24):6519-28 gene gene1657 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1669 YPO1670 YPO1670 YPO1670 1900484 1901470 - conserved hypothetical protein Similar to Escherichia coli hypothetical protein YihM SW:YIHM_ECOLI (P32134) (326 aa) fasta scores: E(): 1.1e-05%2C 21.2%25 id in 312 aa%2C and to Streptomyces coelicolor hypothetical protein SCF55.01c TR:Q9RJR3 (EMBL:AL132991) (232 aa) fasta scores: E(): 8.5e-09%2C 27.1%25 id in 192 aa gene gene1658 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1670 YPO1671 YPO1671 YPO1671 1901648 1902325 + putative DNA-binding protein Similar to Haemophilus influenzae hypothetical protein HI0575 SW:YHEO_HAEIN (P44761) (221 aa) fasta scores: E(): 7.4e-21%2C 32.1%25 id in 212 aa%2C and to Escherichia coli hypothetical protein YheO SW:YHEO_ECOLI (P45533) (240 aa) fasta scores: E(): 6.2e-18%2C 32.0%25 id in 219 aa gene gene1659 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1671 YPO1672 YPO1672 YPO1672 1902800 1906606 + conserved hypothetical protein Similar to Bordetella pertussis BapA protein TR:CAC14165 (EMBL:AJ277632) (903 aa) fasta scores: E(): 0%2C32.6%25 id in 915 aa%2C to Escherichia coli YchA protein TR:Q9JMS3 (EMBL:AP001918) (1371 aa) fasta scores: E(): 8.4e-25%2C 24.7%25 id in 1300 aa%2C and to the previously sequenced Yersinia pestis YapE protein TR:CAC14224 (EMBL:AJ277628) (1072 aa) fasta scores: E(): 1.5e-18%2C 23.9%25 id in 1160 aa. Similar to YPO0765 (82.4%25 identity in 1206 aa overlap) and YPO0309 (81.1%25 identity in 1199 aa overlap) gene gene1660 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1672 YPO1673 YPO1673 YPO1673 1907134 1910010 + putative integral membrane protein Similar to Pseudomonas aeruginosa hypothetical protein TR:AAG08499 (EMBL:AE004924) (1201 aa) fasta scores: E(): 6.7e-08%2C 25.1%25 id in 828 aa gene gene1661 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1673 YPO1674 YPO1674 YPO1674 1910079 1910780 + putative lipoprotein Similar to Escherichia coli hypothetical 24.8 kDa protein in ibpa-gyrb intergenic region yidX SW:YIDX_ECOLI (P31461) (223 aa) fasta scores: E(): 2.5e-09%2C 32.0%25 id in 169 aa%2C and to Enterococcus faecium mevalonate kinase mvak1 TR:AAG02445 (EMBL:AF290095) (314 aa) fasta scores: E(): 9.5%2C 29.3%25 id in 150 aa gene gene1662 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1674 YPO1675 YPO1675 cheD cheD 1911021 1912694 + methyl-accepting chemotaxis protein Similar to Escherichia coli methyl-accepting chemotaxis protein I Tsr or CheD or B4355 SW:MCP1_ECOLI (P02942) (551 aa) fasta scores: E(): 0%2C 67.3%25 id in 557 aa%2Cand to Enterobacter aerogenes methyl-accepting chemotaxis serine transducer Tse SW:MCPS_ENTAE (P21822) (557 aa) fasta scores: E(): 0%2C 69.8%25 id in 559 aa gene gene1663 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1675 YPO1676 YPO1676 YPO1676 1912878 1914488 + methyl-accepting chemotaxis protein (pseudogene) Similar to Enterobacter aerogenes methyl-accepting chemotaxis aspartate transducer Tas SW:MCPD_ENTAE (P21823) (512 aa) fasta scores: E(): 0%2C 63.9%25 id in 523 aa%2C and to Escherichia coli methyl-accepting chemotaxis protein IV Tap SW:MCP4_ECOLI (P07018) (533 aa) fasta scores: E(): 0%2C 56.6%25 id in 516 aa%2C and to E. coli methyl-accepting chemotaxis protein I SW:MCP1_ECOLI (P02942) (551 aa) fasta scores: E(): 0%2C 54.1%25 id in 529 aa%2C and to Escherichia coli methyl-accepting chemotaxis protein II Tar or CheM SW:MCP2_ECOLI (P07017) (553 aa) fasta scores: E(): 0%2C 51.5%25 id in 518 aa%2C and to Escherichia coli methyl-accepting chemotaxis protein III Trg SW:MCP3_ECOLI (P05704) (546 aa) fasta scores: E(): 0%2C 45.8%25 id in 518 aa. This CDS contains a stop codon at position 406. The sequence has been checked and is believed to be correct pseudogene gene1664 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1676 YPO1678 YPO1678 cheR cheR 1914661 1915533 + chemotaxis protein methyltransferase Similar to Escherichia coli chemotaxis protein methyltransferase CheR SW:CHER_ECOLI (P07364) (286 aa) fasta scores: E(): 0%2C 71.7%25 id in 283 aa%2C and to Salmonella typhimurium chemotaxis protein methyltransferase CheR SW:CHER_SALTY (P07801) (288 aa) fasta scores: E(): 0%2C 72.9%25 id in 284 aa gene gene1665 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1678 YPO1679 YPO1679 cheB cheB 1915533 1916582 + protein-glutamate methylesterase Similar to Escherichia coli protein-glutamate methylesterase CheB SW:CHEB_ECOLI (P07330) (349 aa) fasta scores: E(): 0%2C 84.5%25 id in 349 aa%2C and to Salmonella typhimurium protein-glutamate methylesterase CheB SW:CHEB_SALTY (P04042) (349 aa) fasta scores: E(): 0%2C 83.7%25 id in 349 aa gene gene1666 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1679 YPO1680 YPO1680 cheY cheY 1916683 1917072 + chemotaxis protein CheY Similar to Escherichia coli chemotaxis protein CheY SW:CHEY_ECOLI (P06143) (128 aa) fasta scores: E(): 0%2C 90.6%25 id in 128 aa%2C and to Salmonella typhimurium chemotaxis protein chey CheY SW:CHEY_SALTY (P06657) (128 aa) fasta scores: E(): 0%2C 89.8%25 id in 128 aa gene gene1667 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1680 YPO1681 YPO1681 cheZ cheZ 1917082 1917726 + chemotaxis protein CheZ Similar to Escherichia coli chemotaxis protein CheZ SW:CHEZ_ECOLI (P07366) (214 aa) fasta scores: E(): 0%2C 79.3%25 id in 208 aa%2C and to Salmonella typhimurium chemotaxis protein CheZ SW:CHEZ_SALTY (P07800) (214 aa) fasta scores: E(): 0%2C 79.3%25 id in 208 aa gene gene1668 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1681 YPO1682 YPO1682 YPO1682 1918040 1918159 - hypothetical protein doubtful CDS with no significant database hits. Weakly similar to Equus caballus transferrin TR:Q9TUP2 (EMBL:AF168417) (61 aa) fasta scores: E(): 3.6%2C 39.4%25 id in 33 aa gene gene1669 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1682 YPO1683 YPO1683 YPO1683 1918291 1919055 + probable N-acetylmuramoyl-L-alanine amidase Similar to Escherichia coli probable N-acetylmuramoyl-L-alanine amidase YbjR B0867 SW:YBJR_ECOLI (P75820) (276 aa) fasta scores: E(): 1.1e-32%2C 43.9%25 id in 253 aa and Pseudomonas aeruginosa hypothetical protein TR:AAG04196 (EMBL:AE004516) (255 aa) fasta scores: E(): 0%2C60.1%25 id in 253 aa. Similar to YPO1715 (48.0%25 identity in 256 aa overlap) gene gene1670 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1683 YPO1684 YPO1684 YPO1684 1919412 1922043 + putative membrane protein (pseudogene) Similar to the C-terminal parts of: Xylella fastidiosa surface protein Xf1981 TR:Q9PC04 (EMBL:AE004017) (1190 aa) fasta scores: E(): 0%2C 37.0%25 id in 816 aa%2C and to Xylella fastidiosa surface protein Xf1529 TR:Q9PD50 (EMBL:AE003982) (2059 aa) fasta scores: E(): 0%2C 32.3%25 id in 914 aa%2C and to Salmonella typhi SapB protein TR:CAC14217 (EMBL:AJ277623) (1107 aa) fasta scores: E(): 2.6e-28%2C 30.7%25 id in 953 aa. This CDS appears to have a frameshift mutation following codon 701. The frameshift occurs within a homopolymeric tract of 9G. The sequence has been checked and is believed to be correct pseudogene gene1671 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1684 YPO1686 YPO1686 YPO1686 1922143 1923096 + putative exported protein Some similarity to the C-terminal part of Canine adenovirus type 2 DNA Polymerase Pol SW:DPOL_ADECT (P87553) (1150 aa) fasta scores: E(): 6.1%2C 28.5%25 id in 172 aa. Similar to YPO0901 (61.0%25 identity in 354 aa overlap) gene gene1672 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1686 YPO1687 YPO1687 YPO1687 1923715 1924944 - putative alanine racemase Similar to Vibrio cholerae putative alanine racemase Vc1312 TR:Q9KSE5 (EMBL:AE004211) (428 aa) fasta scores: E(): 0%2C 44.1%25 id in 408 aa%2C and to Synechocystis sp alanine racemase AlR or Slr0827 SW:ALR_SYNY3 (P54918) (400 aa) fasta scores: E(): 7.5e-24%2C 28.7%25 id in 401 aa gene gene1673 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1687 YPO1688 YPO1688 YPO1688 1926119 1926367 + hypothetical protein No significant database hits gene gene1674 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1688 YPO1689 YPO1689 YPO1689 1926760 1928016 + putative lipoprotein Weak similarity to Bacillus subtilis hypothetical 32.9 kDa protein in gcvt-spoiiiaa intergenic region YqhO SW:YQHO_BACSU (P54513) (291 aa) fasta scores: E(): 0.31%2C26.2%25 id in 248 aa%2C and to Caenorhabditis elegans hypothetical protein Y73b6bl.Z TR:AAG23484 (EMBL:AC084197) (546 aa) fasta scores: E(): 0.45%2C 24.0%25 id in 262 aa gene gene1675 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1689 YPO1690 YPO1690 YPO1690 1928171 1928404 + hypothetical protein No significant database hits gene gene1676 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1690 YPO1691 YPO1691 ypmt1.57c ypmt1.57c 1928939 1929721 - insertion sequence IS100%2C ATP-binding protein Similar to Escherichia coli insertion sequence IS21 putative ATP-binding protein%2C IstB SW:ISTB_ECOLI (P15026) (265 aa) fasta scores: E(): 0%2C 47.4%25 id in 249 aa. Also almost identical to Yersinia pestis and Escherichia coli putative IS100 transposase ypmt1.57c TR:Q9R3L5 (EMBL:AL117211) (260 aa) fasta scores: E(): 0%2C 99.6%25 id in 260 aa. gene gene1677 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1691 YPO1692 YPO1692 y1093 y1093 1929718 1930740 - transposase for insertion sequence IS100 Similar to Escherichia coli transposase for insertion sequence element IS21 IstA SW:ISTA_ECOLI (P15025) (390 aa) fasta scores: E(): 3e-27%2C 33.1%25 id in 329 aa. Identical to the previously sequenced Yersinia pestis%2CYersinia pseudotuberculosis%2C and Escherichia coli pesticin plasmid insertion sequence transposase Y1055 TR:P74993 (EMBL:U59875) (340 aa) fasta scores: E(): 0%2C 100.0%25 id in 340 aa gene gene1678 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1692 YPO1693 YPO1693 YPO1693 1931147 1931536 + conserved hypothetical protein Similar to Streptomyces coelicolor hypothetical protein SC6G4.19C TR:O86782 (EMBL:AL031317) (190 aa) fasta scores: E(): 6.5e-10%2C 41.3%25 id in 104 aa%2C and to Bacillus halodurans BH0898 protein TR:Q9KEF4 (EMBL:AP001510) (134 aa) fasta scores: E(): 0.034%2C 30.5%25 id in 95 aa gene gene1679 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1693 YPO1694 YPO1694 YPO1694 1931646 1931885 - conserved hypothetical protein Similar to Escherichia coli hypothetical protein YebV SW:YEBV_ECOLI (P76274) (78 aa) fasta scores: E(): 4.1e-19%2C 57.9%25 id in 76 aa gene gene1680 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1694 YPO1695 YPO1695 YPO1695 1932093 1933082 - putative membrane protein Similar to Pseudomonas aeruginosa hypothetical protein TR:AAG08040 (EMBL:AE004879) (315 aa) fasta scores: E(): 0%2C 41.5%25 id in 299 aa%2C and to Pseudomonas fluorescens hypothetical 23.6 kDa protein TR:Q9KIM7 (EMBL:AF228767) (231 aa) fasta scores: E(): 1.2e-13%2C 29.9%25 id in 231 aa gene gene1681 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1695 YPO1696 YPO1696 YPO1696 1933288 1935735 - probable outer membrane usher protein Similar to Escherichia coli outer membrane usher protein AfaC precursor SW:AFAC_ECOLI (P53517) (859 aa) fasta scores: E(): 1.4e-13%2C 22.7%25 id in 631 aa and Pseudomonas aeruginosa hypothetical protein Pa4652 TR:AAG08039 (EMBL:AE004879) (790 aa) fasta scores: E(): 0%2C42.9%25 id in 805 aa gene gene1682 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1696 YPO1697 YPO1697 YPO1697 1935923 1936675 - putative chaperone protein Similar to Pseudomonas aeruginosa PA01 probable pili assembly chaperone TR:AAG08038 (EMBL:AE004879) (262 aa) fasta scores: E(): 0%2C 43.2%25 id in 243 aa%2C and to Escherichia coli chaperone protein CssC precursor SW:CSC1_ECOLI (P53518) (232 aa) fasta scores: E(): 0.0013%2C21.9%25 id in 242 aa gene gene1683 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1697 YPO1698 YPO1698 YPO1698 1936706 1937263 - putative exported protein Similar to Myxococcus xanthus protein U precursor Pru SW:PRU_MYXXA (P27755) (179 aa) fasta scores: E(): 6.7e-05%2C 25.0%25 id in 180 aa%2C and to Pseudomonas aeruginosa PA01 hypothetical protein TR:AAG08037 (EMBL:AE004879) (180 aa) fasta scores: E(): 8e-16%2C 34.5%25 id in 174 aa. This CDS shares 31.9%25 and 30.8%25 identity with YPO1699 and YPO1700 respectively gene gene1684 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1698 YPO1699 YPO1699 YPO1699 1937284 1937814 - putative exported protein Similar to Myxococcus xanthus protein U precursor Pru SW:PRU_MYXXA (P27755) (179 aa) fasta scores: E(): 9.9e-07%2C 28.9%25 id in 180 aa%2C and to Pseudomonas aeruginosa PA01 hypothetical protein TR:AAG08036 (EMBL:AE004879) (177 aa) fasta scores: E(): 2.4e-20%2C 40.6%25 id in 170 aa. This CDS shares 31.9%25 and 35.9%25 identity with YPO1698 and YPO1700 respectively gene gene1685 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1699 YPO1700 YPO1700 YPO1700 1937820 1938374 - putative exported protein Similar to Myxococcus xanthus protein U precursor Pru SW:PRU_MYXXA (P27755) (179 aa) fasta scores: E(): 6.3e-10%2C 31.6%25 id in 187 aa%2C and to Pseudomonas aeruginosa PA01 hypothetical protein TR:AAG08035 (EMBL:E004879) (182 aa) fasta scores: E(): 2.2e-11%2C 31.3%25 id in 166 aa. This CDS shares 30.8%25 and 35.9%25 identity with the two upstream CDSes%2C YPO1698 and YPO1699%2C respectively gene gene1686 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1700 YPO1701 YPO1701 YPO1701 1938853 1941504 - conserved hypothetical protein Similar to Escherichia coli hypothetical protein YebT TR:P76272 (EMBL:AE000277) (879 aa) fasta scores: E(): 0%2C 67.6%25 id in 886 aa. Note the extensive overlap with the upstream CDS. gene gene1687 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1701 YPO1702 YPO1702 yebS yebS 1941473 1942825 - putative membrane protein Similar to Escherichia coli hypothetical 48.3 kDa protein in prc-pphA intergenic region YebS SW:YEBS_ECOLI (P76271) (427 aa) fasta scores: E(): 0%2C 66.5%25 id in 415 aa%2Cand to Haemophilus influenzae hypothetical protein Hi1671 SW:YEBS_HAEIN (P44287) (416 aa) fasta scores: E(): 0%2C 44.7%25 id in 398 aa gene gene1688 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1702 YPO1703 YPO1703 YPO1703 1942952 1943449 + conserved hypothetical protein Similar to Escherichia coli hypothetical protein YebR SW:YEBR_ECOLI (P76270) (183 aa) fasta scores: E(): 0%2C65.9%25 id in 164 aa%2C and to Vibrio cholerae hypothetical protein VC1498 TR:Q9KRY5 (EMBL:AE004228) (192 aa) fasta scores: E(): 0%2C 66.2%25 id in 136 aa gene gene1689 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1703 YPO1704 YPO1704 proQ proQ 1943545 1944258 + ProP effector homologue Similar to Escherichia coli ProQ SW:PROQ_ECOLI (P45577) (232 aa) fasta scores: E(): 0%2C 74.0%25 id in 242 aa. It has been suggested that ProQ is a structural element that influences the osmotic activation of ProP (an osmoregulatory compatible solute transporter in E. coli K-12) at a posttranslational level. It is also similar to Vibrio cholerae hypothetical protein VC1497 TR:Q9KRY6 (EMBL:AE004228) (208 aa) fasta scores: E(): 3.7e-23%2C 53.0%25 id in 236 aa gene gene1690 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1704 YPO1705 YPO1705 prc prc 1944278 1946350 + tail-specific protease precursor Similar to Escherichia coli tail-specific protease precursor Prc or Tsp SW:PRC_ECOLI (P23865) (682 aa) fasta scores: E(): 0%2C 81.6%25 id in 681 aa%2C and to Vibrio cholerae tail-specific protease VC1496 TR:Q9KRY7 (EMBL:AE004228) (665 aa) fasta scores: E(): 0%2C 57.8%25 id in 664 aa gene gene1691 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1705 YPO1706 YPO1706 htpX htpX 1946824 1947705 + putative heat shock protein Similar to Escherichia coli probable protease HtpX SW:HTPX_ECOLI (P23894) (293 aa) fasta scores: E(): 0%2C 87.0%25 id in 293 aa%2C and to Vibrio cholerae heat shock protein HtpX vc1117 TR:Q9KSY9 (EMBL:AE004192) (287 aa) fasta scores: E(): 0%2C 69.9%25 id in 292 aa gene gene1692 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1706 YPO1707 YPO1707 YPO1707 1948363 1948905 + putative fimbrial protein Similar to Escherichia coli F17 fimbrial protein precursor F17A-A SW:FMF3_ECOLI (P11312) (180 aa) fasta scores: E(): 4.3e-15%2C 40.2%25 id in 174 aa%2C and to Xylella fastidiosa fimbrial subunit precursor Xf0083 TR:Q9PH63 (EMBL:AE003862) (184 aa) fasta scores: E(): 7.5e-17%2C 44.2%25 id in 190 aa gene gene1693 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1707 YPO1708 YPO1708 ecpD ecpD 1949058 1949837 + putative chaperone protein Similar to Escherichia coli chaperone protein precursor EcpD SW:ECPD_ECOLI (P33128) (246 aa) fasta scores: E(): 0%2C 41.2%25 id in 245 aa%2C and to Bordetella pertussis chaperone protein precursor FimB or FhaD SW:FIMB_BORPE (P33409) (244 aa) fasta scores: E(): 1.3e-30%2C43.2%25 id in 234 aa. This CDS is 38.3%25 identical to YPO1711 gene gene1694 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1708 YPO1709 YPO1709 htrE htrE 1949919 1952531 + putative outer membrane usher protein Similar to Escherichia coli outer membrane usher protein HtrE precursor SW:HTRE_ECOLI (P33129) (865 aa) fasta scores: E(): 0%2C 35.8%25 id in 861 aa%2C and to Escherichia coli outer membrane usher protein FocD precursor SW:FOCD_ECOLI (P46009) (875 aa) fasta scores: E(): 0%2C 35.4%25 id in 813 aa gene gene1695 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1709 YPO1710 YPO1710 YPO1710 1952528 1953691 + putative fimbrial protein Weak Similarity to Bordetella pertussis FhaE protein precursor FhaE or FimD SW:FHAE_BORPE (Q00879) (376 aa) fasta scores: E(): 0.004%2C 21.0%25 id in 391 aa%2C and to Bordetella parapertussis FimD fimbrial adhesin fimD TR:Q44888 (EMBL:X75812) (376 aa) fasta scores: E(): 0.004%2C21.3%25 id in 352 aa gene gene1696 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1710 YPO1711 YPO1711 YPO1711 1953688 1954491 + putative chaperone protein Similar to Escherichia coli chaperone protein EcpD precursor SW:ECPD_ECOLI (P33128) (246 aa) fasta scores: E(): 3.5e-25%2C 36.5%25 id in 252 aa%2C and to Bordetella pertussis chaperone protein FimB or FhaD precursor SW:FIMB_BORPE (P33409) (244 aa) fasta scores: E(): 1.3e-22%2C38.3%25 id in 248 aa. This CDS is 38.3%25 identical to YPO1708 gene gene1697 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1711 YPO1712 YPO1712 YPO1712 1954545 1955912 - putative transport protein Similar to Zymomonas mobilis tetracenomycin C resistance and export protein YjcC TR:Q9X3X9 (EMBL:AF088896) (487 aa) fasta scores: E(): 0%2C 43.9%25 id in 444 aa%2C and to Escherichia coli O494 TR:P76269 (EMBL:AE000277) (494 aa) fasta scores: E(): 0%2C 69.9%25 id in 452 aa gene gene1698 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1712 YPO1713 YPO1713 ogl ogl 1956239 1957405 + oligogalacturonate lyase Similar to Erwinia chrysanthemi oligogalacturonate lyase Ogl SW:OGL_ERWCH (P21258) (388 aa) fasta scores: E(): 0%2C 79.4%25 id in 388 aa%2C and to Erwinia carotovora oligogalacturonide lyase Ogl SW:OGL_ERWCA (Q59418) (388 aa) fasta scores: E(): 0%2C 80.2%25 id in 388 aa gene gene1699 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1713 YPO1714 YPO1714 kdgR kdgR 1957592 1958383 + IclR-family transcriptional regulatory protein Similar to Pectobacterium carotovorum subsp. cartovorum KdgR TR:Q9RB24 (EMBL:AF135396) (263 aa) fasta scores: E(): 0%2C 89.0%25 id in 263 aa%2C and to Escherichia coli transcriptional regulator KdgR SW:KDGR_ECOLI (P76268) (263 aa) fasta scores: E(): 0%2C 86.3%25 id in 263 aa gene gene1700 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1714 YPO1715 YPO1715 b0867 b0867 1958768 1959619 + probable N-acetylmuramoyl-L-alanine amidase Similar to Escherichia coli probable N-acetylmuramoyl-L-alanine amidase YbjR or B0867 SW:YBJR_ECOLI (P75820) (276 aa) fasta scores: E(): 0%2C 47.0%25 id in 268 aa%2C and to Pseudomonas aeruginosa TR:AAG08870 (EMBL:AE004961) (259 aa) fasta scores: E(): 0%2C 48.3%25 id in 265 aa. Similar to YPO1683 (48.0%25 identity in 256 aa overlap) gene gene1701 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1715 YPO1716 YPO1716 gltP gltP 1959834 1961231 - putative transport protein Similar to Escherichia coli proton glutamate symport protein GltP SW:GLTP_ECOLI (P21345) (437 aa) fasta scores: E(): 2.2e-21%2C 25.9%25 id in 432 aa%2C and to Escherichia coli hypothetical symporter YdjN SW:YDJN_ECOLI (P77529) (463 aa) fasta scores: E(): 0%2C 83.8%25 id in 463 aa gene gene1702 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1716 YPO1717 YPO1717 ydjM ydjM 1961429 1961977 - putative membrane protein Similar to Escherichia coli hypothetical 22.8 kDa protein in pfkB-cedA intergenic region precursor ydjM SW:YDJM_ECOLI (P76209) (200 aa) fasta scores: E(): 0%2C 66.7%25 id in 162 aa gene gene1703 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1717 YPO1718 YPO1718 YPO1718 1962457 1963167 - putative exported protein Similar to Vibrio halioticoli alginate lyase AlyvgIII TR:Q9RGQ2 (EMBL:AF114040) (235 aa) fasta scores: E(): 5.4e-09%2C 30.2%25 id in 255 aa%2C and to Escherichia coli hypothetical 28.3 kDa protein in fecI-fimB intergenic region precursor YjhA SW:YJHA_ECOLI (P39372) (241 aa) fasta scores: E(): 1.1e-07%2C 22.3%25 id in 247 aa. Similar to YPO3995 (63.7%25 identity in 212 aa overlap) gene gene1704 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1718 YPO1719 YPO1719 YPO1719 1963465 1964757 - putative sugar-binding protein Similar to Bacillus subtilis hypothetical ABC transporter extracellular binding protein YurO precursor SW:YURO_BACSU (O32156) (422 aa) fasta scores: E(): 2.7e-13%2C23.3%25 id in 442 aa%2C and to Streptomyces coelicolor putative maltose-binding pootein MalE TR:P72397 (EMBL:Y07706) (423 aa) fasta scores: E(): 3.8e-11%2C 23.3%25 id in 434 aa gene gene1705 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1719 YPO1720 YPO1720 YPO1720 1964773 1965900 - putative sugar ABC transporter Similar to Klebsiella oxytoca CymD TR:Q48394 (EMBL:X86014) (376 aa) fasta scores: E(): 0%2C 54.7%25 id in 375 aa%2C and to Thermococcus litoralis maltose transport protein MalK TR:Q9YGA6 (EMBL:AF121946) (372 aa) fasta scores: E(): 0%2C 47.8%25 id in 387 aa. Similar to YPO0609 (53.9%25 identity in 373 aa overlap) gene gene1706 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1720 YPO1721 YPO1721 YPO1721 1965914 1966834 - putative sugar ABC transporter (permease) Similar to Bacillus halodurans lactose transport system Bh1119 TR:Q9KDU2 (EMBL:AP001511) (281 aa) fasta scores: E(): 0%2C 43.3%25 id in 268 aa%2C and to Bacillus subtilis probable ABC transporter permease protein YesQ SW:YESQ_BACSU (O31520) (296 aa) fasta scores: E(): 0%2C 37.3%25 id in 292 aa gene gene1707 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1721 YPO1722 YPO1722 YPO1722 1966827 1967717 - putative ABC sugar transporter (permease) Similar to Bacillus halodurans lactose transport system Bh1118 TR:Q9KDU3 (EMBL:AP001511) (318 aa) fasta scores: E(): 0%2C 46.7%25 id in 289 aa%2C and to Streptomyces coelicolor putative transport system inner membrane protein Scl2.28C TR:Q9L271 (EMBL:AL137778) (328 aa) fasta scores: E(): 0%2C 40.8%25 id in 299 aa gene gene1708 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1722 YPO1723 YPO1723 kdgC kdgC 1967758 1969425 - exopolygalacturonate lyase Similar to Erwinia chrysanthemi exopolygalacturonate lyase PelW or KdgC SW:PELW_ERWCH (Q05526) (553 aa) fasta scores: E(): 0%2C 63.1%25 id in 555 aa%2C and to Yersinia pseudotuberculosis periplasmic pectate lyase precursor PelY SW:PELP_YERPS (P11278) (541 aa) fasta scores: E(): 0%2C 38.7%25 id in 530 aa. Similar to YPO3994 (38.6%25%25 identity in 534 aa overlap). gene gene1709 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1723 YPO1724 YPO1724 kduD1 kduD1 1969761 1970522 - 2-deoxy-D-gluconate 3-dehydrogenase Similar to Escherichia coli 2-deoxy-D-gluconate 3-dehydrogenase KduD SW:KDUD_ECOLI (P37769) (253 aa) fasta scores: E(): 0%2C 84.6%25 id in 253 aa%2C and to Erwinia chrysanthemi 2-deoxy-D-gluconate 3-dehydrogenase KduD SW:KDUD_ERWCH (Q05528) (253 aa) fasta scores: E(): 0%2C 80.6%25 id in 253 aa. Similar to YPO0839 (68.1%25 identity in 251 aa overlap) gene gene1710 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1724 YPO1725 YPO1725 kduI kduI 1970614 1971450 - 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase Similar to Erwinia chrysanthemi 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase KduI SW:KDUI_ERWCH (Q05529) (278 aa) fasta scores: E(): 0%2C 83.5%25 id in 278 aa%2C and to Escherichia coli 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase KduI SW:KDUI_ECOLI (Q46938) (278 aa) fasta scores: E(): 0%2C 79.9%25 id in 278 aa gene gene1711 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1725 YPO1726 YPO1726 kdgF kdgF 1971786 1972112 + pectin degradation protein (pseudogene) Similar to Erwinia chrysanthemi pectin degradation protein KdgF SW:KDGF_ERWCH (Q05527) (110 aa) fasta scores: E(): 0%2C 80.7%25 id in 109 aa%2C and to Bacillus halodurans pectin degradation protein KdgF TR:Q9KFI3 (EMBL:AP001508) (108 aa) fasta scores: E(): 1.8e-09%2C 37.8%25 id in 98 aa. This CDS may have been disrupted by the insertion of IS285 element. This insertion occurred very near the C-terminal end%2C replacing the last aa at the C-terminal end with 7 aa encoded within the IS element. It is not clear whether this insertion affects the function of the protein. pseudogene gene1712 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1726 YPO1727 YPO1727 y1062 y1062 1972184 1973392 + transposase for the IS285 insertion element Previously sequenced Yersinia pestis transposase Y1062 or Ypmt1.80C TR:O68779 (EMBL:AF053947) (402 aa) fasta scores: E(): 0%2C 100.0%25 id in 402 aa gene gene1713 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1727 YPO1728 YPO1728 YPO1728 1976636 1976842 + putative transcriptional regulator of sugar transport (pseudogene) This CDS is disrupted by the insertion of IS100. The full length CDS is similar to Escherichia coli raffinose operon repressor RafR SW:RAFR_ECOLI (P21867) (335 aa) fasta scores: E(): 0%2C 49.4%25 id in 332 aa pseudogene gene1714 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1728 YPO1729 YPO1729 y1093 y1093 1974768 1975790 + transposase for insertion sequence IS100 Similar to Escherichia coli transposase for insertion sequence element IS21 IstA SW:ISTA_ECOLI (P15025) (390 aa) fasta scores: E(): 3e-27%2C 33.1%25 id in 329 aa. Identical to the previously sequenced Yersinia pestis%2CYersinia pseudotuberculosis%2C and Escherichia coli pesticin plasmid insertion sequence transposase Y1055 TR:P74993 (EMBL:U59875) (340 aa) fasta scores: E(): 0%2C 100.0%25 id in 340 aa gene gene1715 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1729 YPO1730 YPO1730 ypmt1.57c ypmt1.57c 1975787 1976569 + insertion sequence IS100%2C ATP-binding protein Similar to Escherichia coli insertion sequence IS21 putative ATP-binding protein%2C IstB SW:ISTB_ECOLI (P15026) (265 aa) fasta scores: E(): 0%2C 47.4%25 id in 249 aa. Also almost identical to Yersinia pestis and Escherichia coli putative IS100 transposase ypmt1.57c TR:Q9R3L5 (EMBL:AL117211) (260 aa) fasta scores: E(): 0%2C 99.6%25 id in 260 aa. gene gene1716 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1730 YPO1732 YPO1732 YPO1732 1977238 1978050 - conserved hypothetical protein Similar to Escherichia coli hypothetical protein YeeI SW:YEEI_ECOLI (P76346) (265 aa) fasta scores: E(): 0%2C62.9%25 id in 267 aa%2C and to Yersinia pseudotuberculosis ORF1 protein (fragment) TR:Q9ZEX5 (EMBL:AJ009592) (154 aa) fasta scores: E(): 0%2C 99.4%25 id in 154 aa gene gene1717 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1732 YPO1733 YPO1733 YPO1733 1978440 1978724 - conserved hypothetical protein Similar to Streptomyces coelicolor hypothetical protein SC5F2A.08c TR:Q9X7N1 (EMBL:AL049587) (98 aa) fasta scores: E(): 2.3e-12%2C 45.1%25 id in 91 aa%2C and to Deinococcus radiodurans conserved hypothetical protein DR1071 TR:Q9RVF8 (EMBL:AE001957) (105 aa) fasta scores: E(): 4.2e-08%2C 33.7%25 id in 83 aa gene gene1718 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1733 YPO1734 YPO1734 YPO1734 1978961 1979812 - conserved hypothetical protein Similar to Pseudomonas aeruginosa conserved hypothetical protein PA4780 TR:AAG08166 (EMBL:AE004891) (297 aa) fasta scores: E(): 0%2C 67.7%25 id in 282 aa gene gene1719 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1734 YPO1735 YPO1735 YPO1735 1979915 1981633 - putative ABC transporter (ATP-binding protein) Similar to Bacillus halodurans ABC transporter Bh3891 TR:Q9K641 (EMBL:AP001520) (577 aa) fasta scores: E(): 0%2C 62.2%25 id in 569 aa%2C and to Bacillus subtilis hypothetical ABC transporter ATP-binding protein in acda 5'region YwjA SW:YWJA_BACSU (P45861) (575 aa) fasta scores: E(): 0%2C 59.4%25 id in 569 aa gene gene1720 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1735 YPO1736 YPO1736 YPO1736 1982289 1982453 + putative membrane protein Some similarity to the internal part of Caenorhabditis elegans probable Eph-like kinase M03a1.1 TR:Q21477 (EMBL:U49956) (919 aa) fasta scores: E(): 2.2%2C32.1%25 id in 56 aa gene gene1721 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1736 YPO1737 YPO1737 YPO1737 1982535 1982921 - AraC-family transcriptional regulatory protein Similar to Proteus vulgaris regulatory protein PqrA SW:PQRA_PROVU (Q52620) (122 aa) fasta scores: E(): 2.4e-17%2C47.6%25 id in 103 aa%2C and to Escherichia coli regulatory protein SoxS SW:SOXS_ECOLI (P22539) (106 aa) fasta scores: E(): 2.2e-15%2C 38.5%25 id in 104 aa gene gene1722 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1737 YPO1738 YPO1738 YPO1738 1983477 1983716 + conserved hypothetical protein Similar to Escherichia coli hypothetical protein YecJ SW:YECJ_ECOLI (P52092) (83 aa) fasta scores: E(): 1e-21%2C 74.7%25 id in 79 aa gene gene1723 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1738 YPO1739 YPO1739 YPO1739 1983807 1984025 - putative membrane protein Similar to the C-terminal end of Influenza B virus hemagglutinin (fragment) TR:AAG22556 (EMBL:AF305219) (127 aa) fasta scores: E(): 1.2%2C 45.2%25 id in 42 aa gene gene1724 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1739 YPO1740 YPO1740 YPO1740 1984623 1984898 + putative exported protein Similar to Escherichia coli from bases 1896340 to 1906636 TR:P76266 (EMBL:AE000276) (95 aa) fasta scores: E(): 5.8e-06%2C 36.7%25 id in 90 aa gene gene1725 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1740 YPO1741 YPO1741 YPO1741 1985161 1985460 + hypothetical protein Weakly similar to Yersinia pestis hypothetical 13.8 kDa protein Y1115 or YPMT1.48c TR:Q9ZGY0 (EMBL:AF074611) (123 aa) fasta scores: E(): 0.00024%2C 34.2%25 id in 120 aa. This CDS has an internal deletion relative to the Y. pestis plasmid-encoded hypothetical protein Y1115/Ypmt1 gene gene1726 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1741 YPO1742 YPO1742 YPO1742 1985503 1985814 + hypothetical protein Weakly similar to C-terminal end of Thermoplasma acidophilum ribonuclease HII RnhB or TA1458 SW:RNH2_THEAC (P57673) (212 aa) fasta scores: E(): 4.3%2C 33.8%25 id in 65 aa gene gene1727 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1742 YPO1743 YPO1743 aroP aroP 1986051 1987424 + aromatic amino acid transport protein Similar to Escherichia coli aromatic amino acid transport protein AroP SW:AROP_ECOLI (P15993) (457 aa) fasta scores: E(): 0%2C 70.5%25 id in 454 aa%2C and to Salmonella typhimurium AroP protein TR:Q9L4I0 (EMBL:AJ242516) (457 aa) fasta scores: E(): 0%2C 69.6%25 id in 454 aa. Similar to YPO3421 (77.8%25 identity in 445 aa overlap). gene gene1728 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1743 YPO1744 YPO1744 YPO1744 1987729 1988328 - putative exported protein Similar to Salmonella typhimurium PagP TR:Q9ZHL7 (EMBL:AF057021) (186 aa)%2C which is thought to be involved in lipid A acylation and bacterial resistance against vertebral antimicrobial peptides%2C fasta scores: E(): 0%2C52.8%25 id in 159 aa%2C and to Escherichia coli CrcA protein SW:CRCA_ECOLI (P37001) (186 aa)%2C which is thought to be involved in camphor resistance and chromosome condensation%2Cfasta scores: E(): 0%2C 53.5%25 id in 159 aa gene gene1729 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1744 YPO1745 YPO1745 YPO1745 1989330 1989446 + conserved hypothetical protein Similar to Escherichia coli hypothetical protein YobF SW:YOBF_ECOLI (P76265) (47 aa) fasta scores: E(): 6.1e-11%2C 78.9%25 id in 38 aa gene gene1730 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1745 YPO1746 YPO1746 cspC cspC 1989489 1989698 + cold shock protein Similar to Escherichia coli cold shock-like protein CspC or MsmB SW:CSPC_ECOLI (P36996) (68 aa) fasta scores: E(): 4.1e-27%2C 98.5%25 id in 68 aa%2C and to Salmonella typhimurium cold shock-like protein CspC SW:CSPC_SALTY (O68636) (68 aa) fasta scores: E(): 1.9e-26%2C 97.1%25 id in 68 aa. Paralogues include YPO1655%2C YPO2595%2C YPO2659%2C YPO3644%2CYPO3643%2C YPO1366%2C and YPO1398 gene gene1731 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1746 YPO1747 YPO1747 YPO1747 1989789 1990544 - conserved hypothetical protein Similar to Vibrio cholerae hypothetical protein VC0710 TR:Q9KU19 (EMBL:AE004157) (240 aa) fasta scores: E(): 3.6e-15%2C 32.8%25 id in 174 aa%2C and to Escherichia coli hypothetical protein YfiH SW:YFIH_ECOLI (P33644) (243 aa) fasta scores: E(): 1e-13%2C 36.2%25 id in 152 aa gene gene1732 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1747 YPO1748 YPO1748 rrmA rrmA 1990939 1991778 + rRNA (guanine-N1-)-methyltransferase Similar to Escherichia coli rRNA (guanine-N1-)-methyltransferase RrmA SW:RRMA_ECOLI (P36999) (269 aa) fasta scores: E(): 0%2C 60.0%25 id in 270 aa%2C and to Vibrio cholerae rRNA (guanine-N1-)-methyltransferase Vc2003 TR:Q9KQJ5 (EMBL:AE004275) (278 aa) fasta scores: E(): 0%2C55.5%25 id in 272 aa gene gene1733 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1748 YPO1749 YPO1749 YPO1749 1992000 1992278 - hypothetical protein Weakly similar to the C-terminal end of Drosophila melanogaster CG3402 protein TR:Q9W0P4 (EMBL:AE003469) (123 aa) fasta scores: E(): 6.7%2C 27.0%25 id in 74 aa. Similar to YPO2096 (42.5%25 identity in 87 aa overlap) gene gene1734 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1749 YPO1750 YPO1750 y1093 y1093 1992646 1993668 + transposase for insertion sequence IS100 Similar to Escherichia coli transposase for insertion sequence element IS21 IstA SW:ISTA_ECOLI (P15025) (390 aa) fasta scores: E(): 3e-27%2C 33.1%25 id in 329 aa. Identical to the previously sequenced Yersinia pestis%2CYersinia pseudotuberculosis%2C and Escherichia coli pesticin plasmid insertion sequence transposase Y1055 TR:P74993 (EMBL:U59875) (340 aa) fasta scores: E(): 0%2C 100.0%25 id in 340 aa gene gene1736 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1750 YPO1751 YPO1751 ypmt1.57c ypmt1.57c 1993665 1994447 + insertion sequence IS100%2C ATP-binding protein Similar to Escherichia coli insertion sequence IS21 putative ATP-binding protein%2C IstB SW:ISTB_ECOLI (P15026) (265 aa) fasta scores: E(): 0%2C 47.4%25 id in 249 aa. Also almost identical to Yersinia pestis and Escherichia coli putative IS100 transposase ypmt1.57c TR:Q9R3L5 (EMBL:AL117211) (260 aa) fasta scores: E(): 0%2C 99.6%25 id in 260 aa. gene gene1737 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1751 YPO1752 YPO1752 YPO1752 1992500 1992553 - hypothetical protein (pseudogene) This CDS is disrupted by the insertion of IS100 element. Similar to the internal region of Pseudomonas aeruginosa hypothetical protein PA1181 TR:Q9I4F7 (EMBL:AE004548) (1120 aa) fasta scores: E(): 4.7e-53%2C32.423%25 id in 586 aa pseudogene gene1735 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1752 YPO1753 YPO1753 fcuA fcuA 1996899 1999175 + ferrichrome receptor protein Similar to Yersinia enterocolitica ferrichrome receptor FcuA SW:FCUA_YEREN (Q05202) (758 aa) fasta scores: E(): 0%2C 83.9%25 id in 762 aa%2C and to Bordetella bronchiseptica putative ferric siderophore receptor BfrB TR:P94265 (EMBL:U77671) (734 aa) fasta scores: E(): 0%2C38.9%25 id in 730 aa gene gene1738 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1753 YPO1754 YPO1754 yebN yebN 1999336 1999905 - putative membrane protein Similar to Escherichia coli hypothetical 22.1 kDa protein in manz-cspc intergenic region yebN SW:YEBN_ECOLI (P76264) (206 aa) fasta scores: E(): 0%2C 67.4%25 id in 187 aa%2Cand to Pseudomonas aeruginosa hypothetical protein PA2910 TR:AAG06298 (Q9HZT7) (189 aa) fasta scores: E(): 0%2C 60.8%25 id in 186 aa gene gene1739 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1754 YPO1755 YPO1755 yobD yobD 2000334 2000795 - putative membrane protein Similar to Escherichia coli hypothetical 17.6 kDa protein in manZ-cspC intergenic region yobD SW:YOBD_ECOLI (P76263) (152 aa) fasta scores: E(): 0%2C 61.2%25 id in 152 aa gene gene1740 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1755 YPO1756 YPO1756 gptB gptB 2000995 2001882 - PTS system%2C mannose-specific IID component Similar to Escherichia coli PTS system%2Cmannose-specific IID component ManZ or PtsM or GptB SW:PTND_ECOLI (P08188) (286 aa) fasta scores: E(): 0%2C 86.6%25 id in 291 aa%2C and to Bacillus subtilis PTS system%2Cfructose-specific IID component LevG SW:PTFD_BACSU (P26382) (275 aa) fasta scores: E(): 0%2C 60.4%25 id in 273 aa. This CDS has a small insertion at the N-terminal end relative to that of E.coli gene gene1741 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1756 YPO1757 YPO1757 manY manY 2001889 2002686 - PTS system%2C mannose-specific IIC component Similar to Escherichia coli PTS system%2Cmannose-specific IIC component ManY or PtsP or Pel SW:PTNC_ECOLI (P08187) (266 aa) fasta scores: E(): 0%2C 87.7%25 id in 269 aa%2C and to Klebsiella pneumoniae PTS system%2Csorbose-specific IIC component SorA SW:PTRC_KLEPN (P37082) (266 aa) fasta scores: E(): 0%2C 61.3%25 id in 266 aa gene gene1742 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1757 YPO1758 YPO1758 gptB gptB 2002778 2003752 - PTS system%2C mannose-specific IIAB component Similar to Escherichia coli PTS system%2Cmannose-specific IIAB component ManX or PtsL or GptB SW:PTNA_ECOLI (P08186) (322 aa) fasta scores: E(): 0%2C 81.4%25 id in 323 aa%2C and to Streptococcus salivarius mannose-specific phosphotransferase system component iiab manL TR:Q9S4L5 (EMBL:AF130465) (330 aa) fasta scores: E(): 0%2C 42.5%25 id in 332 aa gene gene1743 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1758 YPO1759 YPO1759 yoaE yoaE 2004523 2005917 + putative membrane protein Similar to Escherichia coli hypothetical 56.5 kDa protein in sdaA-manX intergenic region yoaE SW:YOAE_ECOLI (P76262) (518 aa) fasta scores: E(): 0%2C 71.6%25 id in 457 aa%2Cand to Neisseria meningitidis conserved hypothetical integral membrane protein Nma1694 TR:Q9JTN9 (EMBL:AL162756) (518 aa) fasta scores: E(): 0%2C 45.1%25 id in 466 aa gene gene1744 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1759 YPO1760 YPO1760 hpaR hpaR 2006019 2006486 - homoprotocatechuate degradative operon repressor Similar to Escherichia coli homoprotocatechuate degradative operon repressor HpcR or HpaR SW:HPCR_ECOLI (Q07095) (148 aa) fasta scores: E(): 0%2C 66.4%25 id in 149 aa%2Cand to Salmonella dublin HpaR TR:Q9RPU4 (EMBL:AF144422) (146 aa) fasta scores: E(): 0%2C 70.5%25 id in 139 aa gene gene1745 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1760 YPO1761 YPO1761 hpaG hpaG 2006870 2008263 + 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase (pseudogene) Similar to Escherichia coli 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase HpaG SW:HPAG_ECOLI (Q46978) (429 aa) fasta scores: E(): 0%2C 61.4%25 id in 456 aa%2C and to Escherichia coli homoprotocatechuate catabolism bifunctional isomerase/decarboxylase SW:HPCE_ECOLI (P37352) (405 aa) fasta scores: E(): 0%2C 60.7%25 id in 433 aa. This CDS is frameshifted%2C possibly following an insertion event%2C after codon 204. The sequence has been checked and is believed to be correct pseudogene gene1746 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1761 YPO1763 YPO1763 hpaE hpaE 2008260 2009657 + 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase Similar to Escherichia coli 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase HpaE TR:Q46979 (EMBL:Z37980) (488 aa) fasta scores: E(): 0%2C 81.1%25 id in 488 aa%2C and to Escherichia coli 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase HpcC SW:HPCC_ECOLI (P42269) (468 aa) fasta scores: E(): 0%2C 79.3%25 id in 464 aa gene gene1747 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1763 YPO1764 YPO1764 hpaD hpaD 2009776 2010633 + 3%2C4-dihydroxyphenylacetate 2%2C3-dioxygenase Similar to Escherichia coli 3%2C4-dihydroxyphenylacetate 2%2C3-dioxygenase HpaD TR:Q46980 (EMBL:Z37980) (282 aa) fasta scores: E(): 0%2C 86.4%25 id in 280 aa%2C and to Escherichia coli 3%2C4-dihydroxyphenylacetate 2%2C3-dioxygenase HpcB SW:HPCB_ECOLI (Q05353) (275 aa) fasta scores: E(): 0%2C 85.3%25 id in 259 aa gene gene1748 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1764 YPO1765 YPO1765 hpaF hpaF 2010658 2011056 + 5-carboxymethyl-2-hydroxymuconate delta-isomerase Similar to Escherichia coli 5-carboxymethyl-2-hydroxymuconate delta-isomerase HpaF TR:Q46981 (EMBL:Z37980) (125 aa) fasta scores: E(): 0%2C71.8%25 id in 124 aa%2C and to Escherichia coli 5-carboxymethyl-2-hydroxymuconate delta-isomerase HpcD SW:HPCD_ECOLI (Q05354) (125 aa) fasta scores: E(): 0%2C 71.0%25 id in 124 aa gene gene1749 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1765 YPO1766 YPO1766 hpaH hpaH 2011050 2011853 + 2-oxo-hept-3-ene-1%2C7-dioate hydratase Similar to Escherichia coli 2-oxo-hept-3-ene-1%2C7-dioate hydratase Hpah or hpcG TR:Q46982 (EMBL:Z37980) (267 aa) fasta scores: E(): 0%2C79.4%25 id in 267 aa%2C and to Escherichia coli 2-oxo-hepta-3-ene-1%2C7-dioic acid hydratase HpcG SW:HPCG_ECOLI (P42270) (264 aa) fasta scores: E(): 0%2C 74.9%25 id in 267 aa gene gene1750 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1766 YPO1767 YPO1767 hpaI hpaI 2011864 2012670 + 2%2C4-dihydroxyhept-2-ene-1%2C7-dioic acid aldolase Similar to Escherichia coli 2%2C4-dihydroxyhept-2-ene-1%2C7-dioic acid aldolase HpcH or HpaI SW:HPAI_ECOLI (Q47098) (262 aa) fasta scores: E(): 0%2C73.7%25 id in 251 aa%2C and to Salmonella dublin 2%2C4-dihydroxyhept-2-ene-1%2C7-dioic acid aldolase HpaI SW:HPAI_SALDU (Q9RPV0) (263 aa) fasta scores: E(): 0%2C 74.1%25 id in 251 aa gene gene1751 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1767 YPO1768 YPO1768 hpaX hpaX 2012696 2014063 + putative 4-hydroxyphenylacetate permease Similar to Escherichia coli putative 4-hydroxyphenylacetate permease HpaX TR:Q46984 (EMBL:Z37980) (458 aa) fasta scores: E(): 0%2C 75.9%25 id in 456 aa%2C and to Salmonella dublin HpaX TR:Q9RPV1 (EMBL:AF144422) (458 aa) fasta scores: E(): 0%2C 75.9%25 id in 456 aa gene gene1752 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1768 YPO1769 YPO1769 hpaB hpaB 2014131 2015693 + 4-hydroxyphenylacetate 3-monooxygenase Similar to Escherichia coli 4-hydroxyphenylacetate 3-monooxygenase HpaB TR:Q57160 (EMBL:Z37980) (520 aa) fasta scores: E(): 0%2C 81.3%25 id in 520 aa%2C and to Klebsiella pneumoniae 4-hydroxyphenylacetate 3-monooxygenase HpaA TR:Q48440 (EMBL:L41068) (520 aa) fasta scores: E(): 0%2C81.3%25 id in 520 aa gene gene1753 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1769 YPO1770 YPO1770 hpaC hpaC 2015714 2016211 + 4-hydroxyphenylacetate 3-monooxygenase coupling protein Similar to Escherichia coli 4-hydroxyphenylacetate 3-monooxygenase coupling protein HpaC TR:Q57501 (EMBL:Z29081) (170 aa) fasta scores: E(): 0%2C 72.0%25 id in 161 aa%2C and to Salmonella dublin HpaC TR:Q9RPU2 (EMBL:AF144422) (170 aa) fasta scores: E(): 0%2C 73.0%25 id in 159 aa gene gene1754 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1770 YPO1771 YPO1771 sdaA sdaA 2016491 2017855 - L-serine dehydratase Similar to Escherichia coli L-serine dehydratase 1 SdaA SW:SDHL_ECOLI (P16095) (454 aa) fasta scores: E(): 0%2C84.1%25 id in 453 aa%2C and to Escherichia coli L-serine dehydratase 2 SdaB SW:SDHM_ECOLI (P30744) (455 aa) fasta scores: E(): 0%2C 76.2%25 id in 454 aa%2C and to Escherichia coli L-serine dehydratase TdcG SW:TDCG_ECOLI (P42630) (454 aa) fasta scores: E(): 0%2C 71.5%25 id in 453 aa gene gene1755 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1771 YPO1772 YPO1772 YPO1772 2018563 2019162 - MutT-family protein Similar to Escherichia coli hypothetical protein YeaB SW:YEAB_ECOLI (P43337) (192 aa) fasta scores: E(): 0%2C57.4%25 id in 190 aa gene gene1756 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1772 YPO1773 YPO1773 pabB pabB 2019159 2020535 - para-aminobenzoate synthase component I Similar to Salmonella typhimurium para-aminobenzoate synthase component I PabB SW:PABB_SALTY (P12680) (454 aa) fasta scores: E(): 0%2C 67.6%25 id in 447 aa%2C and to Escherichia coli para-aminobenzoate synthase component I PabB SW:PABB_ECOLI (P05041) (453 aa) fasta scores: E(): 0%2C66.7%25 id in 447 aa gene gene1757 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1773 YPO1774 YPO1774 YPO1774 2020700 2020957 + conserved hypothetical protein Similar to Escherichia coli hypothetical protein YoaH SW:YOAH_ECOLI (P76260) (59 aa) fasta scores: E(): 1.1e-09%2C 59.3%25 id in 59 aa%2C and to Salmonella typhimurium hypothetical protein SW:YOAH_SALTY (P56505) (42 aa) fasta scores: E(): 4.4e-08%2C 73.8%25 id in 42 aa gene gene1758 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1774 YPO1775 YPO1775 purT purT 2021083 2022264 - phosphoribosylglycinamide formyltransferase Similar to Escherichia coli phosphoribosylglycinamide formyltransferase 2 PurT SW:PURT_ECOLI (P33221) (391 aa) fasta scores: E(): 0%2C 78.7%25 id in 389 aa%2C and to Vibrio cholerae phosphoribosylglycinamide formyltransferase 2 Vc1228 TR:Q9KSM8 (EMBL:AE004202) (393 aa) fasta scores: E(): 0%2C70.1%25 id in 391 aa gene gene1759 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1775 YPO1776 YPO1776 dbpA dbpA 2022577 2023959 + ATP-dependent RNA helicase Similar to Escherichia coli ATP-dependent RNA helicase DbpA SW:DBPA_ECOLI (P21693) (457 aa) fasta scores: E(): 0%2C 68.8%25 id in 459 aa%2C and to Vibrio cholerae ATP-dependent RNA helicase DbpA Vc2564 TR:Q9KP15 (EMBL:AE004325) (460 aa) fasta scores: E(): 0%2C 54.0%25 id in 461 aa gene gene1760 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1776 YPO1777 YPO1777 YPO1777 2024053 2024373 + conserved hypothetical protein Similar to Escherichia coli hypothetical protein YebG SW:YEBG_ECOLI (P33220) (96 aa) fasta scores: E(): 9.2e-17%2C 55.8%25 id in 95 aa%2C and to Vibrio cholerae hypothetical protein VC2326 TR:Q9KPP0 (EMBL:AE004303) (102 aa) fasta scores: E(): 9.4e-11%2C 62.1%25 id in 66 aa gene gene1761 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1777 YPO1778 YPO1778 YPO1778 2024413 2024721 + conserved hypothetical protein Similar to Escherichia coli hypothetical protein YqfB SW:YQFB_ECOLI (Q46828) (103 aa) fasta scores: E(): 5.4e-23%2C 65.7%25 id in 99 aa%2C and to Haemophilus influenzae hypothetical protein HI1394 SW:YQFB_HAEIN (P44172) (123 aa) fasta scores: E(): 1.5e-21%2C 60.8%25 id in 97 aa gene gene1762 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1778 YPO1779 YPO1779 YPO1779 2024813 2025238 + putative exported protein Similar to Escherichia coli hypothetical 13.5 kDa lipoprotein in ptrB-purT intergenic region SW:YEBF_ECOLI (P33219) (122 aa) fasta scores: E(): 4.1e-15%2C 42.7%25 id in 117 aa%2C and to Escherichia coli colicin M immunity protein SW:IMMM_ECOLI (P18002) (141 aa) fasta scores: E(): 7.3e-05%2C27.3%25 id in 121 aa gene gene1763 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1779 YPO1780 YPO1780 ptrB ptrB 2025548 2027599 + oligopeptidase B Similar to Salmonella enterica serovar Typhimurium oligopeptidase B OpdB TR:Q9L6C8 (EMBL:AF237705) (683 aa) fasta scores: E(): 0%2C 65.3%25 id in 680 aa%2C and to Escherichia coli protease II PtrB or Tlp SW:PTRB_ECOLI (P24555) (686 aa) fasta scores: E(): 0%2C 63.8%25 id in 680 aa gene gene1764 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1780 YPO1781 YPO1781 pip pip 2028321 2029271 + proline iminopeptidase Similar to Serratia marcescens proline iminopeptidase Pip TR:O32449 (EMBL:D87897) (317 aa) fasta scores: E(): 0%2C 82.2%25 id in 315 aa%2C and to Xylella fastidiosa proline iminopeptidase TR:Q9PD69 (EMBL:AE003981) (313 aa) fasta scores: E(): 0%2C 56.7%25 id in 312 aa gene gene1765 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1781 YPO1782 YPO1782 holE holE 2029331 2029561 - DNA polymerase III%2C theta subunit Similar to Escherichia coli DNA polymerase III%2Ctheta subunit HolE SW:HOLE_ECOLI (P28689) (76 aa) fasta scores: E(): 3.5e-16%2C 64.5%25 id in 76 aa gene gene1766 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1782 YPO1783 YPO1783 ftn ftn 2029962 2030471 + ferritin Similar to Escherichia coli ferritin 1 FtnA or Ftn or RsgA or Gen-165 SW:FTNA_ECOLI (P23887) (165 aa) fasta scores: E(): 0%2C 64.6%25 id in 164 aa%2C and to Vibrio cholerae ferritin Vc0078 TR:Q9KVR1 (EMBL:AE004098) (181 aa) fasta scores: E(): 0%2C 69.0%25 id in 168 aa gene gene1767 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1783 YPO1784 YPO1784 YPO1784 2030868 2031254 + putative copper resistance protein Similar to Escherichia coli copper resistance protein C precursor PcoC SW:COPC_ECOLI (Q47454) (126 aa) fasta scores: E(): 4.7e-09%2C 36.6%25 id in 123 aa%2C and to Escherichia coli hypothetical 13.4 kDa protein in pphA-holE intergenic region precursor protein YobA SW:YOBA_ECOLI (P76279) (124 aa) fasta scores: E(): 2.8e-21%2C 50.8%25 id in 122 aa gene gene1768 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1784 YPO1785 YPO1785 YPO1785 2031257 2032141 + putative copper resistance protein D Similar to Ralstonia metallidurans copper resistance protein CopD TR:CAC07982 (EMBL: ) (304 aa) fasta scores: E(): 6.7e-16%2C 29.5%25 id in 312 aa%2C and to Pseudomonas syringae copper resistance protein D CopD SW:COPD_PSESM (P12377) (310 aa) fasta scores: E(): 4.2e-14%2C 27.9%25 id in 305 aa%2C and to Escherichia coli from bases 1918174 to 1928865 TR:P76278 (EMBL:AE000278) (290 aa) fasta scores: E(): 0%2C 40.1%25 id in 292 aa gene gene1769 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1785 YPO1786 YPO1786 yebY yebY 2032223 2032579 + putative exported protein Similar to Escherichia coli hypothetical 12.4 kDa protein in pphA-holE intergenic region YebY SW:YEBY_ECOLI (P76277) (113 aa) fasta scores: E(): 4.9e-26%2C 60.7%25 id in 112 aa gene gene1770 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1786 YPO1787 YPO1787 YPO1787 2032859 2033089 + hypothetical protein Doubtful CDS. No significant database hits gene gene1771 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1787 YPO1788 YPO1788 YPO1788 2033102 2033428 - putative acyl carrier protein Similar to the N-terminal end of Odontella sinensis acyl carrier protein AcpP or Acl1 or Acp SW:ACP_ODOSI (P49517) (80 aa) fasta scores: E(): 5.4%2C 33.9%25 id in 59 aa%2Cand to Neisseria meningitidis acyl carrier protein Nmb1696 TR:Q9JY84 (EMBL:AE002520) (81 aa) fasta scores: E(): 0.6%2C39.2%25 id in 51 aa gene gene1772 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1788 YPO1789 YPO1789 YPO1789 2033422 2033880 - putative membrane protein Similar to the C-terminal end of Aeropyrum pernix hypothetical 27.5 kDa protein Ape1196 TR:Q9YCR5 (EMBL:AP000061) (267 aa) fasta scores: E(): 9%2C 27.5%25 id in 131 aa gene gene1773 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1789 YPO1790 YPO1790 flhB flhB 2034412 2035572 + flagellar biosynthetic protein FlhB Similar to Salmonella typhimurium flagellar biosynthetic protein FlhB SW:FLHB_SALTY (P40727) (383 aa) fasta scores: E(): 0%2C 65.9%25 id in 381 aa%2C and to Yersinia enterocolitica flagellar biosynthetic protein FlhB SW:FLHB_YEREN (Q56886) (383 aa) fasta scores: E(): 0%2C 91.7%25 id in 386 aa gene gene1774 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1790 YPO1791 YPO1791 flhA flhA 2035572 2037650 + flagellar biosynthesis protein FlhA Similar to Salmonella typhimurium flagellar biosynthesis protein FlhA SW:FLHA_SALTY (P40729) (692 aa) fasta scores: E(): 0%2C 84.3%25 id in 690 aa%2C and to Yersinia enterocolitica flagellar biosynthesis protein FlhA SW:FLHA_YEREN (Q56887) (692 aa) fasta scores: E(): 0%2C 96.1%25 id in 692 aa gene gene1775 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1791 YPO1792 YPO1792 flhE flhE 2037650 2038072 + flagellar protein FlhE precursor Similar to Yersinia enterocolitica flagellar protein FlhE precursor SW:FLHE_YEREN (Q56888) (140 aa) fasta scores: E(): 0%2C 73.8%25 id in 141 aa%2C and to Salmonella typhimurium flagellar protein FlhE precursor SW:FLHE_SALTY (P40728) (130 aa) fasta scores: E(): 9.4e-16%2C 44.3%25 id in 131 aa gene gene1776 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1792 YPO1793 YPO1793 inv inv 2040296 2042350 + invasin (pseudogene) This gene is disrupted by the insertion%2C after codon 302%2C of an IS200-like insertion sequence. The full length CDS is similar to Yersinia pestis invasin Inv TR:Q56937 (EMBL:U22457) (987 aa) fasta scores: E(): 0%2C 99.8%25 id in 986 aa%2C and to Yersinia pseudotuberculosis invasin SW:INVA_YERPS (P11922) (985 aa) fasta scores: E(): 0%2C 99.1%25 id in 986 aa pseudogene gene1777 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1793 YPO1794 YPO1794 tnp tnp 2039730 2040188 + transposase for the IS1541 insertion element Similar to Salmonella typhimurium and Salmonella typhi transposase for insertion sequence IS200%2C TnpA%2CSW:TNPA_SALTY (Q57334) (152 aa) fasta scores: E(): 0%2C 93.4%25 id in 152 aa. Almost identical to the Yersinia pseudotuberculosis IS1541-like element transposase Tnp TR:Q9X9F5 (EMBL:AJ238014) (152 aa) fasta scores: E(): 0%2C99.3%25 id in 152 aa gene gene1778 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1794 YPO1796 YPO1796 flgN flgN 2042540 2042980 - flagella synthesis protein FlgN Similar to Yersinia enterocolitica flagella synthesis protein FlgN SW:FLGN_YEREN (Q56854) (147 aa) fasta scores: E(): 0%2C 83.6%25 id in 146 aa%2C and to Proteus mirabilis flagella synthesis protein FlgN SW:FLGN_PROMI (P96975) (146 aa) fasta scores: E(): 2.9e-20%2C 43.2%25 id in 146 aa gene gene1779 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1796 YPO1797 YPO1797 flgM flgM 2042999 2043301 - negative regulator of flagellin synthesis Probable anti-sigma-28 factor. Similar to Yersinia enterocolitica negative regulator of flagellin synthesis FlgM SW:FLGM_YEREN (Q57401) (99 aa) fasta scores: E(): 5.7e-28%2C 87.6%25 id in 97 aa%2C and to Salmonella typhimurium negative regulator of flagellin synthesis FlgM or FlgR or MviS SW:FLGM_SALTY (P26477) (97 aa) fasta scores: E(): 1.5e-15%2C 59.2%25 id in 98 aa gene gene1780 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1797 YPO1798 YPO1798 flgA flgA 2043452 2044150 - flagella basal body P-ring formation protein FlgA Similar to Yersinia enterocolitica flagella basal body P-ring formation protein FlgA SW:FLGA_YEREN (Q56892) (224 aa) fasta scores: E(): 0%2C 79.1%25 id in 230 aa%2C and to Salmonella typhimurium flagella basal body P-ring formation protein FlgA SW:FLGA_SALTY (P40131) (219 aa) fasta scores: E(): 5.4e-29%2C 41.5%25 id in 200 aa gene gene1781 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1798 YPO1799 YPO1799 fla FII fla FII 2044389 2044802 + flagellar basal-body rod protein FlgB Similar to Salmonella typhimurium flagellar basal-body rod protein FlgB FlbA or Fla FII SW:FLGB_SALTY (P16437) (137 aa) fasta scores: E(): 0%2C 74.3%25 id in 136 aa%2Cand to Yersinia enterocolitica flagellar basal-body rod protein FlgB SW:FLGB_YEREN (Q56893) (136 aa) fasta scores: E(): 0%2C 96.3%25 id in 136 aa gene gene1782 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1799 YPO1800 YPO1800 fla FIII fla FIII 2044808 2045212 + flagellar basal-body rod protein FlgC Similar to Salmonella typhimurium flagellar basal-body rod protein FlgC or FlaW or Fla FIII SW:FLGC_SALTY (P16438) (134 aa) fasta scores: E(): 0%2C 79.9%25 id in 134 aa%2C and to Yersinia enterocolitica flagellar basal-body rod protein FlgC SW:FLGC_YEREN (Q56894) (134 aa) fasta scores: E(): 0%2C 96.3%25 id in 134 aa gene gene1783 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1800 YPO1801 YPO1801 Fla FIV Fla FIV 2045227 2045904 + basal-body rod modification protein FlgD Similar to Salmonella typhimurium basal-body rod modification protein FlgD or FlaV or Fla FIV SW:FLGD_SALTY (P16321) (232 aa) fasta scores: E(): 0%2C 70.7%25 id in 215 aa%2Cand to Escherichia coli basal-body rod modification protein FlgD or FlaV or Fla FIV SW:FLGD_ECOLI (P75936) (231 aa) fasta scores: E(): 0%2C 68.1%25 id in 229 aa gene gene1784 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1801 YPO1802 YPO1802 Fla FV Fla FV 2046106 2047392 + flagellar hook protein FlgE Similar to Salmonella typhimurium flagellar hook protein FlgE or FlaK or Fla FV SW:FLGE_SALTY (P16322) (402 aa) fasta scores: E(): 0%2C 61.7%25 id in 426 aa%2C and to Escherichia coli flagellar hook protein FlgE or FlaK or Fla FV SW:FLGE_ECOLI (P75937) (401 aa) fasta scores: E(): 0%2C61.6%25 id in 427 aa. This CDS contains small internal insertions relative to S.typhimurium and E.coli FlgE gene gene1785 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1802 YPO1803 YPO1803 fla FVI fla FVI 2047414 2048043 + flagellar basal-body rod protein FlgF Similar to Salmonella typhimurium flagellar basal-body rod protein FlgF or FlaX or Fla FVI SW:FLGF_SALTY (P16323) (251 aa) fasta scores: E(): 0%2C 64.5%25 id in 200 aa%2C and to Escherichia coli flagellar basal-body rod protein FlgF or FlaX or Fla FVI SW:FLGF_ECOLI (P75938) (251 aa) fasta scores: E(): 0%2C 64.5%25 id in 200 aa. This CDS is approx. 40 amino acids shorter (at the C-terminal end) than the S. typhimurium and E.coli FlgF gene gene1786 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1803 YPO1804 YPO1804 fla FVII fla FVII 2048024 2048722 + flagellar basal-body rod protein FlgG Similar to Salmonella typhimurium flagellar basal-body rod protein FlgG or FlaL or Fla FVII SW:FLGG_SALTY (P16439) (260 aa) fasta scores: E(): 0%2C 89.2%25 id in 232 aa%2C and to Escherichia coli O157:H7 flagellar biosynthesis%2C cell-distal portion of basal-body rod FlgG TR:AAG55824 (EMBL:AE005318) (260 aa) fasta scores: E(): 0%2C88.8%25 id in 232 aa. This CDS is missing 24 amino acids at the N-terminal end gene gene1787 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1804 YPO1805 YPO1805 fla FVIII fla FVIII 2048866 2049555 + flagellar L-ring protein precursor Similar to Salmonella typhimurium flagellar L-ring protein precursor FlgH or FlaY or Fla FVIII SW:FLGH_SALTY (P15929) (232 aa) fasta scores: E(): 0%2C 81.1%25 id in 222 aa%2Cand to Escherichia coli O157:H7 flagellar biosynthesis%2Cbasal-body outer-membrane FlgH TR:AAG55825 (EMBL:AE005318) (232 aa) fasta scores: E(): 0%2C 80.7%25 id in 218 aa gene gene1788 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1805 YPO1806 YPO1806 fla FIX fla FIX 2049570 2050679 + flagellar P-ring protein precursor Similar to Salmonella typhimurium flagellar P-ring protein precursor FlgI or FlaM or Fla FIX SW:FLGI_SALTY (P15930) (365 aa) fasta scores: E(): 0%2C 79.3%25 id in 358 aa%2Cand to Escherichia coli flagellar P-ring protein precursor FlgI or FlaM or Fla FIX SW:FLGI_ECOLI (P75941) (365 aa) fasta scores: E(): 0%2C 78.9%25 id in 361 aa. Similar to YPO0730 (47.5%25 identity in 362 aa overlap) gene gene1789 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1806 YPO1807 YPO1807 fla FX fla FX 2050679 2051623 + flagellar protein FlgJ Similar to Salmonella typhimurium flagellar protein FlgJ or FlaZ or Fla FX SW:FLGJ_SALTY (P15931) (316 aa) fasta scores: E(): 0%2C 60.4%25 id in 316 aa%2C and to Escherichia coli flagellar protein FlgJ or FlaZ or Fla FX SW:FLGJ_ECOLI (P75942) (313 aa) fasta scores: E(): 0%2C 57.4%25 id in 317 aa gene gene1790 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1807 YPO1808 YPO1808 flaS flaS 2052494 2054158 + flagellar hook-associated protein 1 Similar to Salmonella typhimurium flagellar hook-associated protein 1 FlgK or FlaS or FlaW SW:FLGK_SALTY (P15932) (552 aa) fasta scores: E(): 0%2C 56.3%25 id in 558 aa%2C and to Escherichia coli flagellar hook-associated protein 1 FlgK or FlaS or FlaW SW:FLGK_ECOLI (P33235) (546 aa) fasta scores: E(): 0%2C 57.8%25 id in 552 aa gene gene1791 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1808 YPO1809 YPO1809 flaT flaT 2054297 2055277 + flagellar hook-associated protein 3 Similar to Salmonella typhimurium flagellar hook-associated protein 3 FlgL or FlaT or FlaU SW:FLGL_SALTY (P16326) (317 aa) fasta scores: E(): 0%2C 60.0%25 id in 325 aa%2C and to Escherichia coli flagellar hook-associated protein 3 FlgL or FlaT or FlaU SW:FLGL_ECOLI (P29744) (317 aa) fasta scores: E(): 0%2C 60.9%25 id in 325 aa gene gene1792 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1809 YPO1810 YPO1810 YPO1810 2055306 2056283 - putative transcriptional regulatory protein Similar to Bacillus subtilis deoxyribonucleoside regulator DeoR SW:DEOR_BACSU (P39140) (313 aa) fasta scores: E(): 9.1e-17%2C 26.9%25 id in 305 aa%2C and to Bacillus halodurans transcriptional regulator BH0780 TR:Q9KER9 (EMBL:AP001509) (316 aa) fasta scores: E(): 3.9e-26%2C 32.2%25 id in 304 aa gene gene1793 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1810 YPO1811 YPO1811 YPO1811 2056525 2058591 + putative oxidoreductase Similar to Bacillus halodurans hypothetical protein Bh1550 TR:Q9KCM1 (EMBL:AP001512) (689 aa) fasta scores: E(): 0%2C 33.9%25 id in 676 aa%2C and to Bacillus subtilis hypothetical oxidoreductase in gbsA-tlpB intergenic region YuxG or YulA SW:YUXG_BACSU (P40747) (689 aa) fasta scores: E(): 0%2C 32.3%25 id in 706 aa gene gene1794 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1811 YPO1812 YPO1812 YPO1812 2058739 2059800 + putative sugar transport system permease protein Similar to Bacillus subtilis ribose transport system permease protein RbsC SW:RBSC_BACSU (P36948) (323 aa) fasta scores: E(): 1.9e-21%2C 31.6%25 id in 335 aa%2C and to Escherichia coli O157:H7 putative permease component of transport system%2C probably ribose specific Z0419 TR:AAG54673 (EMBL:AE005211) (318 aa) fasta scores: E(): 8.3e-29%2C 36.8%25 id in 315 aa gene gene1795 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1812 YPO1813 YPO1813 YPO1813 2059843 2060838 + putative sugar-binding periplasmic protein Similar to Escherichia coli D-allose-binding periplasmic protein precursor AlsB SW:ALSB_ECOLI (P39265) (311 aa) fasta scores: E(): 2.8e-10%2C 25.8%25 id in 283 aa%2Cand to Streptomyces coelicolor possible secreted solute-binding lipoprotein Scf51a.27 TR:Q9RL38 (EMBL:AL121596) (359 aa) fasta scores: E(): 2.3e-13%2C 24.8%25 id in 303 aa gene gene1796 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1813 YPO1814 YPO1814 YPO1814 2060904 2062481 + putative sugar ABC transporter%2C ATP-binding protein Similar to Escherichia coli ribose transport ATP-binding protein RbsA SW:RBSA_ECOLI (P04983) (501 aa) fasta scores: E(): 0%2C 34.5%25 id in 499 aa%2C and to Bacillus halodurans sugar ABC transporter bh2322 TR:Q9KAG5 (EMBL:AP001515) (522 aa) fasta scores: E(): 0%2C 33.1%25 id in 513 aa gene gene1797 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1814 YPO1815 YPO1815 YPO1815 2062577 2063506 + putative sugar ABC transporter%2C permease Similar to Escherichia coli galactoside transport system permease protein MglC SW:MGLC_ECOLI (P23200) (336 aa) fasta scores: E(): 1.5e-18%2C 30.4%25 id in 319 aa%2C and to Escherichia coli O157:H7 putative permease component of transport system%2C probably ribose specific Z0418 TR:AAG54672 (EMBL:AE005211) (323 aa) fasta scores: E(): 0%2C38.9%25 id in 311 aa gene gene1798 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1815 YPO1816 YPO1816 YPO1816 2063555 2064514 + putative sugar kinase Similar to Escherichia coli hypothetical sugar kinase in ansA-gapA intergenic region YdjH SW:YDJH_ECOLI (P77493) (315 aa) fasta scores: E(): 7.3e-18%2C 25.3%25 id in 296 aa%2C and to Aeropyrum pernix 310aa long hypothetical sugar kinase Ape0012 TR:Q9YG89 (EMBL:AP000058) (310 aa) fasta scores: E(): 6.4e-16%2C 29.1%25 id in 299 aa gene gene1799 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1816 YPO1817 YPO1817 YPO1817 2064772 2065191 - conserved hypothetical protein Similar to Escherichia coli YcfB protein TR:BAB12617 (EMBL:AP002527) (145 aa) fasta scores: E(): 8.8e-09%2C 36.8%25 id in 114 aa%2C and to Bacteriophage HP1 hypothetical protein SW:YO14_BPHP1 (P51716) (133 aa) fasta scores: E(): 5e-11%2C33.8%25 id in 133 aa gene gene1800 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1817 YPO1818 YPO1818 YPO1818 2065236 2065604 - conserved hypothetical protein Similar to Synechocystis sp. hypothetical protein SLR1999 TR:P73830 (EMBL:D90910) (136 aa) fasta scores: E(): 4e-06%2C 42.4%25 id in 59 aa%2C and to Escherichia coli YcfA protein TR:BAB12616 (EMBL:AP002527) (60 aa) fasta scores: E(): 0.0025%2C 43.3%25 id in 60 aa gene gene1801 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1818 YPO1819 YPO1819 fliR fliR 2065625 2066407 - flagellar biosynthetic protein FliR Similar to Erwinia carotovora flagellar biosynthetic protein FliR or MopE SW:FLIR_ERWCA (P34202) (261 aa) fasta scores: E(): 0%2C 65.4%25 id in 260 aa%2C and to Escherichia coli flagellar biosynthetic protein FliR SW:FLIR_ECOLI (P33135) (261 aa) fasta scores: E(): 0%2C 67.6%25 id in 256 aa gene gene1802 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1819 YPO1820 YPO1820 fliP fliP 2066785 2067525 - flagellar biosynthetic protein FliP Similar to Escherichia coli flagellar biosynthetic protein FliP SW:FLIP_ECOLI (P33133) (245 aa) fasta scores: E(): 0%2C 82.2%25 id in 236 aa%2C and to Erwinia carotovora flagellar biosynthetic protein FliP or MopC SW:FLIP_ERWCA (P34200) (258 aa) fasta scores: E(): 0%2C 80.7%25 id in 238 aa gene gene1804 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1820 YPO1820a YPO1820a fliQ fliQ 2066410 2066679 - flagellar biosynthetic protein FliQ Similar to Escherichia coli flagellar biosynthetic protein FliQ SW:FLIQ_ECOLI (P33134) (89 aa) fasta scores: E(): 2.7e-25%2C 78.7%25 id in 89 aa%2C and to Erwinia carotovora flagellar biosynthetic protein FliQ or MopD SW:FLIQ_ERWCA (P34201) (89 aa) fasta scores: E(): 2.7e-25%2C 82.0%25 id in 89 aa gene gene1803 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1820a YPO1821 YPO1821 fliO fliO 2067606 2067974 - flagellar protein FliO Similar to Escherichia coli flagellar protein FliO SW:FLIO_ECOLI (P22586) (101 aa) fasta scores: E(): 3.5e-10%2C50.6%25 id in 87 aa%2C and to Erwinia carotovora MopB protein SW:MOPB_ERWCA (P34199) (140 aa) fasta scores: E(): 7.2e-26%2C65.0%25 id in 117 aa gene gene1805 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1821 YPO1822 YPO1822 flaN flaN 2068142 2068558 - flagellar motor switch protein FliN Similar to Escherichia coli flagellar motor switch protein FliN SW:FLIN_ECOLI (P15070) (137 aa) fasta scores: E(): 0%2C 72.5%25 id in 138 aa%2C and to Salmonella typhimurium flagellar motor switch protein FliN or MotD or FlaN SW:FLIN_SALTY (P26419) (137 aa) fasta scores: E(): 0%2C 73.2%25 id in 138 aa gene gene1806 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1822 YPO1823 YPO1823 CheC2 CheC2 2068555 2069556 - flagellar motor switch protein FliM Similar to Escherichia coli flagellar motor switch protein fliM SW:FLIM_ECOLI (P06974) (334 aa) fasta scores: E(): 0%2C 83.2%25 id in 334 aa%2C and to Salmonella typhimurium flagellar motor switch protein FliM or Fla AII or Fla QII or CheC2 SW:FLIM_SALTY (P26418) (334 aa) fasta scores: E(): 0%2C 84.1%25 id in 334 aa gene gene1807 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1823 YPO1824 YPO1824 cheC1 cheC1 2069562 2070032 - flagellar protein FliL Similar to Escherichia coli flagellar FliL protein SW:FLIL_ECOLI (P06973) (154 aa) fasta scores: E(): 2e-28%2C53.2%25 id in 158 aa%2C and to Salmonella typhimurium flagellar FliL protein or Fla AI or Fla QI or Chec1 SW:FLIL_SALTY (P26417) (155 aa) fasta scores: E(): 2.6e-30%2C 56.0%25 id in 159 aa. This CDS contains 4 amino acids insertion after aa 64 relative to E.coli and S. typhimurium FliLs gene gene1808 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1824 YPO1825 YPO1825 fliK fliK 2070299 2071651 - flagellar hook-length control protein FliK Similar to Escherichia coli flagellar hook-length control protein FliK SW:FLIK_ECOLI (P52614) (375 aa) fasta scores: E(): 1.8e-25%2C 36.8%25 id in 410 aa%2C and to Salmonella typhimurium flagellar hook-length control protein SW:FLIK_SALTY (P26416) (405 aa) fasta scores: E(): 6.5e-27%2C38.7%25 id in 406 aa. Identity level is higher at the C-terminal region gene gene1809 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1825 YPO1826 YPO1826 flaO flaO 2071648 2072094 - flagellar protein FliJ Similar to Escherichia coli flagellar protein FliJ SW:FLIJ_ECOLI (P52613) (147 aa) fasta scores: E(): 2.7e-26%2C56.9%25 id in 144 aa%2C and to Salmonella typhimurium flagellar protein FliJ or FlaO or FlaS SW:FLIJ_SALTY (P26463) (147 aa) fasta scores: E(): 3.6e-26%2C 56.3%25 id in 144 aa gene gene1810 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1826 YPO1827 YPO1827 fla AIII fla AIII 2072194 2073648 - flagellum-specific ATP synthase Similar to Salmonella typhimurium flagellum-specific ATP synthase FliI or Fla AIII or FlaC SW:FLII_SALTY (P26465) (456 aa) fasta scores: E(): 0%2C 80.3%25 id in 468 aa%2Cand to Escherichia coli flagellum-specific ATP synthase FliI or Fla AIII or FlaC SW:FLII_ECOLI (P52612) (457 aa) fasta scores: E(): 0%2C 80.3%25 id in 468 aa. Similar to YPO0717 (52.1%25 identity in 445 aa overlap) gene gene1811 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1827 YPO1828 YPO1828 fla AII.3 fla AII.3 2073611 2074327 - flagellar assembly protein FliH Similar to Salmonella typhimurium flagellar assembly protein FliH or Fla BIII or Fla AII.3 SW:FLIH_SALTY (P15934) (235 aa) fasta scores: E(): 0%2C 55.8%25 id in 233 aa%2Cand to Escherichia coli flagellar assembly protein FliH or Fla BIII or Fla AII.3 SW:FLIH_ECOLI (P31068) (228 aa) fasta scores: E(): 0%2C 55.5%25 id in 236 aa gene gene1812 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1828 YPO1829 YPO1829 fla AII.2 fla AII.2 2074320 2075312 - flagellar motor switch protein FliG Similar to Escherichia coli flagellar motor switch protein FliG or Fla BII or Fla AII.2 SW:FLIG_ECOLI (P31067) (331 aa) fasta scores: E(): 0%2C 83.6%25 id in 329 aa%2C and to Salmonella typhimurium flagellar motor switch protein FliG or Fla BII or Fla AII.2 SW:FLIG_SALTY (P15933) (331 aa) fasta scores: E(): 0%2C 83.3%25 id in 329 aa gene gene1813 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1829 YPO1830 YPO1830 fla AII.1 fla AII.1 2075309 2077021 - flagellar M-ring protein Similar to Salmonella typhimurium flagellar M-ring protein FliF or Fla BI or Fla AII.1 SW:FLIF_SALTY (P15928) (559 aa) fasta scores: E(): 0%2C 64.3%25 id in 552 aa%2C and to Escherichia coli flagellar M-ring protein FliF or Fla BI or Fla AII.1 SW:FLIF_ECOLI (P25798) (552 aa) fasta scores: E(): 0%2C 63.8%25 id in 552 aa gene gene1814 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1830 YPO1831 YPO1831 fla AI fla AI 2077374 2077685 + flagellar hook-basal body complex protein FliE Similar to Escherichia coli flagellar hook-basal body complex protein FliE or FlaN or Fla AI SW:FLIE_ECOLI (P25797) (103 aa) fasta scores: E(): 3.1e-19%2C 59.2%25 id in 103 aa%2C and to Salmonella typhimurium flagellar hook-basal body complex protein FliE or FlaN or Fla AI SW:FLIE_SALTY (P26462) (103 aa) fasta scores: E(): 3.6e-19%2C 56.9%25 id in 102 aa gene gene1815 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1831 YPO1832 YPO1832 YPO1832 2077947 2078252 + hypothetical protein No significant database hits gene gene1816 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1832 YPO1833 YPO1833 YPO1833 2078263 2078739 + conserved hypothetical protein C-terminus similar to Pseudomonas aeruginosa hypothetical protein PA0053 TR:AAG03443 (Q9I779) (84 aa) fasta scores: E(): 1e-10%2C 47.9%25 id in 71 aa. Full length CDS has some similarity to Vibrio cholerae Doc protein VCA0475 TR:Q9KMA2 (EMBL:AE004379) (133 aa) fasta scores: E(): 0.003%2C 26.1%25 id in 115 aa gene gene1817 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1833 YPO1834 YPO1834 YPO1834 2078925 2079536 - putative glycosidase Similar to Schizosaccharomyces pombe DNA-3-methyladenine glycosylase Mag1 SW:MAG1_SCHPO (Q92383) (228 aa) fasta scores: E(): 8.1e-13%2C 30.8%25 id in 195 aa%2Cand to Deinococcus radiodurans putative DNA-3-methyladenine glycosidase II DR2584 TR:Q9RRB0 (EMBL:AE002087) (225 aa) fasta scores: E(): 1.9e-21%2C 38.9%25 id in 193 aa gene gene1818 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1834 YPO1835 YPO1835 YPO1835 2079697 2082652 - putative chemotaxis protein (pseudogene) Similar to Vibrio cholerae chemotactic transducer-related protein Vca0895 TR:Q9KL53 (EMBL:AE004417) (981 aa) fasta scores: E(): 0%2C 36.3%25 id in 992 aa. There is a frameshift after codon 631. The sequence has been checked and is believed to be correct pseudogene gene1819 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1835 YPO1836 YPO1836 YPO1836 2082542 2082607 - gene gene1821 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1836 YPO1836 YPO1836 YPO1836 2081543 2081599 - gene gene1820 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1836 YPO1837 YPO1837 YPO1837 2083006 2083881 - putative AraC-family transcriptional regulatory protein Similar to Escherichia coli transcriptional activator PerA SW:PERA_ECOLI (P43459) (274 aa) fasta scores: E(): 6.4e-09%2C 25.1%25 id in 251 aa%2C and to Escherichia coli hypothetical transcriptional regulator YbcM SW:YBCM_ECOLI (P77634) (265 aa) fasta scores: E(): 4.5e-15%2C 30.4%25 id in 240 aa gene gene1822 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1837 YPO1838 YPO1838 YPO1838 2083888 2084127 - putative membrane protein Similar to the N-terminal region of Homo sapiens olfactory receptor Or17-16 TR:O43880 (EMBL:U86245) (216 aa) fasta scores: E(): 1.3%2C 24.3%25 id in 70 aa gene gene1823 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1838 YPO1839 YPO1839 fliT fliT 2084182 2084544 - FliT Similar to Escherichia coli flagellar protein FliT SW:FLIT_ECOLI (P26610) (121 aa) fasta scores: E(): 1.8e-12%2C44.9%25 id in 107 aa%2C and to Salmonella typhimurium flagellar protein FliT SW:FLIT_SALTY (P26611) (122 aa) fasta scores: E(): 2.4e-09%2C 33.9%25 id in 109 aa gene gene1824 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1839 YPO1840 YPO1840 fliS fliS 2084555 2084953 - flagellar protein FliS Similar to Salmonella typhimurium flagellar protein FliS SW:FLIS_SALTY (P26609) (135 aa) fasta scores: E(): 1.7e-31%2C 69.3%25 id in 127 aa%2C and to Escherichia coli flagellar protein FliSSW:FLIS_ECOLI (P26608) (136 aa) fasta scores: E(): 5e-24%2C 56.5%25 id in 124 aa gene gene1825 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1840 YPO1841 YPO1841 flaV flaV 2084964 2086364 - flagellar hook-associated protein 2 Similar to Escherichia coli flagellar hook-associated protein 2 FliD or FlbC or FlaV SW:FLID_ECOLI (P24216) (467 aa) fasta scores: E(): 0%2C 48.6%25 id in 469 aa%2C and to Salmonella typhimurium flagellar hook-associated protein 2 FliD or FlbC or FlaV SW:FLID_SALTY (P16328) (466 aa) fasta scores: E(): 0%2C 48.0%25 id in 467 aa gene gene1826 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1841 YPO1842 YPO1842 flaF flaF 2086661 2087770 + thermoregulated motility protein Similar to Yersinia enterocolitica thermoregulated motility protein TR:Q56912 (EMBL:L33468) (364 aa) fasta scores: E(): 0%2C 59.5%25 id in 375 aa%2C and to Salmonella typhimurium flagellin FliCs(i) TR:Q02871 (EMBL:D13689) (495 aa) fasta scores: E(): 0%2C 51.9%25 id in 493 aa%2C and to Escherichia coli flagellin FliC or FlaF or HaG SW:FLIC_ECOLI (P04949) (497 aa) fasta scores: E(): 0%2C 49.3%25 id in 493 aa. This CDS has large internal deletions relative to E.coli and S. typhimurium. It has been reported that the central region of the S. typhimurium fliC gene%2Cwhich encodes the antigenic part of the protein%2C is hypervariable both between and within serovars (J. Bacteriol. 1999%2C 172(2): 603-609) gene gene1827 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1842 YPO1843 YPO1843 flaD flaD 2088117 2088839 + RNA polymerase sigma factor for flagellar operon Similar to Yersinia enterocolitica RNA polymerase sigma factor for flagellar operon FliA SW:FLIA_YEREN (P52621) (230 aa) fasta scores: E(): 0%2C 94.8%25 id in 230 aa%2Cand to Salmonella typhimurium RNA polymerase sigma factor for flagellar operon FliA SW:FLIA_SALTY (P17168) (239 aa) fasta scores: E(): 0%2C 83.1%25 id in 236 aa%2C and to Escherichia coli RNA polymerase sigma factor for flagellar operon Flia or FlaD SW:FLIA_ECOLI (P31804) (239 aa) fasta scores: E(): 0%2C 81.8%25 id in 236 aa gene gene1828 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1843 YPO1844 YPO1844 fliZ fliZ 2089061 2089570 + putative alternative sigma factor regulatory protein Similar to Escherichia coli FliZ protein which is thought to regulate the flagella orperon sigma factor FliA SW:FLIZ_ECOLI (P52627) (183 aa) fasta scores: E(): 0%2C 52.5%25 id in 158 aa%2C and to Salmonella typhimurium FliZ TR:Q9S1C1 (EMBL:AB010947) (183 aa) fasta scores: E(): 0%2C 55.1%25 id in 167 aa gene gene1829 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1844 YPO1845 YPO1845 YedO YedO 2089859 2090851 + putative deaminase Similar to Pseudomonas sp 1-aminocyclopropane-1-carboxylate deaminase SW:1A1D_PSESP (Q00740) (338 aa) fasta scores: E(): 0%2C 39.5%25 id in 329 aa%2Cand to Escherichia coli putative 1-aminocyclopropane-1-carboxylate deaminase YedO SW:1A1D_ECOLI (P76316) (328 aa) fasta scores: E(): 0%2C 77.3%25 id in 326 aa gene gene1830 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1845 YPO1846 YPO1846 fliY fliY 2090975 2091775 + putative cystine-binding periplasmic protein Similar to Escherichia coli cystine-binding periplasmic protein precursor FliY SW:FLIY_ECOLI (P39174) (266 aa) fasta scores: E(): 0%2C 74.1%25 id in 266 aa%2C and to Salmonella typhimurium FliY TR:Q9ZNM2 (EMBL:AB010947) (266 aa) fasta scores: E(): 0%2C 74.8%25 id in 266 aa gene gene1831 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1846 YPO1847 YPO1847 yecS yecS 2091775 2092437 + putative amino-acid ABC transporter (permease) Similar to Escherichia coli hypothetical amino-acid ABC transporter permease protein YecS SW:YECS_ECOLI (P76315) (222 aa) fasta scores: E(): 0%2C 80.5%25 id in 220 aa%2Cand to Bacillus halodurans amino acid ABC transporter Bh0171 TR:Q9KGD2 (EMBL:AP001507) (233 aa) fasta scores: E(): 0%2C 53.2%25 id in 203 aa gene gene1832 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1847 YPO1848 YPO1848 yecC yecC 2092440 2093201 + putative amino-acid ABC transporter (ATP-binding protein) Similar to Escherichia coli hypothetical amino-acid ABC transporter ATP-binding protein YecC SW:YECC_ECOLI (P37774) (250 aa) fasta scores: E(): 0%2C 77.0%25 id in 248 aa%2Cand to Haemophilus influenzae probable amino-acid ABC transporter ATP-binding protein Hi1078 hi1078 SW:YA78_HAEIN (P45022) (257 aa) fasta scores: E(): 0%2C 57.7%25 id in 246 aa. Paralogues: YPO2514%2C YPO2777%2C YPO3254%2C YPO2612%2C YPO1352 gene gene1833 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1848 YPO1849 YPO1849 YPO1849 2093493 2093831 - conserved hypothetical protein Similar to Pyrococcus abyssi transcriptional regulatory protein PAB1229 TR:Q9UY03 (EMBL:AJ248288) (184 aa) fasta scores: E(): 0.0023%2C 37.8%25 id in 74 aa%2C and to Thermotoga maritima transcriptional regulator%2Cmetal-sensing TM1176 TR:Q9X0Q8 (EMBL:AE001774) (89 aa) fasta scores: E(): 4.4%2C 26.3%25 id in 80 aa gene gene1834 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1849 YPO1850 YPO1850 YPO1850 2093865 2094200 - hypothetical protein No significant database hits gene gene1835 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1850 YPO1851 YPO1851 poaA poaA 2094664 2098635 - bifunctional PutA protein [includes: proline dehydrogenase and delta-1-pyrroline-5-carboxylate Similar to Escherichia coli bifunctional PutA or PoaA protein [includes: proline dehydrogenase and delta-1-pyrroline-5-carboxylate SW:PUTA_ECOLI (P09546) (1320 aa) fasta scores: E(): 0%2C 79.4%25 id in 1323 aa%2C and to Salmonella typhimurium bifunctional PutA protein [includes: proline dehydrogenase putA SW:PUTA_SALTY (P10503) (1320 aa) fasta scores: E(): 0%2C 78.4%25 id in 1324 aa gene gene1836 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1851 YPO1852 YPO1852 YPO1852 2098980 2099177 + putative membrane protein No significant database matches gene gene1837 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1852 YPO1853 YPO1853 putP putP 2099207 2100691 + proline permease Similar to Salmonella sp. proline permease PutP TR:Q57245 (EMBL:L01145) (489 aa) fasta scores: E(): 0%2C81.8%25 id in 489 aa%2C and to Escherichia coli sodium/proline symporter PutP SW:PUTP_ECOLI (P07117) (502 aa) fasta scores: E(): 0%2C 80.1%25 id in 493 aa gene gene1838 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1853 YPO1854 YPO1854 YPO1854 2101024 2101872 + putative membrane protein Similar to Escherichia coli hypothetical 30.3 kDa protein in putP-phoH intergenic region SW:YCDN_ECOLI (P75901) (276 aa) fasta scores: E(): 0%2C 75.4%25 id in 276 aa%2Cand to Neisseria meningitidis putative integral membrane protein Nma0280 TR:Q9JWN7 (EMBL:AL162752) (279 aa) fasta scores: E(): 0%2C 52.8%25 id in 269 aa gene gene1839 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1854 YPO1855 YPO1855 YPO1855 2101902 2103032 + putative exported protein Similar to Escherichia coli 41.1 kDa protein in putB-phoH intergenic region YcdO SW:YCDO_ECOLI (P75902) (375 aa) fasta scores: E(): 0%2C 74.1%25 id in 371 aa%2C and to Neisseria meningitidis hypothetical protein Nmb0035 TR:Q9K1P6 (EMBL:AE002362) (388 aa) fasta scores: E(): 0%2C59.5%25 id in 358 aa gene gene1840 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1855 YPO1856 YPO1856 YPO1856 2103043 2104347 + conserved hypothetical protein Similar to Escherichia coli hypothetical protein YcdB SW:YCDB_ECOLI (P31545) (423 aa) fasta scores: E(): 0%2C71.9%25 id in 423 aa%2C and to Neisseria meningitidis hypothetical protein NMB0036 TR:Q9K1P5 (EMBL:AE002362) (421 aa) fasta scores: E(): 0%2C 50.6%25 id in 425 aa gene gene1841 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1856 YPO1857 YPO1857 wrbA wrbA 2104433 2105032 - trp repressor binding protein Similar to Escherichia coli trp repressor binding protein WrbA SW:WRBA_ECOLI (P30849) (197 aa) fasta scores: E(): 0%2C 82.3%25 id in 198 aa%2C and to Zymomonas mobilis trp repressor binding protein TR:Q9XBR5 (EMBL:AF157493) (199 aa) fasta scores: E(): 0%2C 54.0%25 id in 198 aa%2C and to Phanerochaete chrysosporium 1%2C4-benzoquinone reductase TR:Q9Y763 (EMBL:AF106939) (201 aa) fasta scores: E(): 0%2C49.5%25 id in 200 aa. It has been proposed that the WrbA protein may function as an accessory element in blocking TrpR-specific transcriptional processes that might be physiologically disadvantageous in the stationary phase of the bacterial life cycle. Proc. Natl. Acad. Sci. U.S.A. (1993)%2C 90:5796-5800 gene gene1842 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1857 YPO1858 YPO1858 YPO1858 2105426 2106604 + putative exported protein Similar to Haemophilus influenzae hypothetical protein Hi0148 SW:YJHT_HAEIN (P44544) (379 aa) fasta scores: E(): 0%2C 46.3%25 id in 374 aa%2C and to Escherichia coli hypothetical 39.6 kDa protein in fecI-fimB intergenic region SW:YJHT_ECOLI (P39371) (368 aa) fasta scores: E(): 0%2C 39.7%25 id in 373 aa gene gene1843 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1858 YPO1859 YPO1859 cycA cycA 2106730 2108154 - D-serine/D-alanine/glycine transporter Similar to Escherichia coli D-serine/D-alanine/glycine transporter CycA or DagA SW:CYCA_ECOLI (P39312) (470 aa) fasta scores: E(): 0%2C 81.9%25 id in 465 aa%2C and to Mycobacterium tuberculosis D-serine/D-alanine/glycine transporter CycA or Rv1704c or mtci125.26C TR:O33203 (EMBL:Z98268) (556 aa) fasta scores: E(): 0%2C 58.3%25 id in 458 aa gene gene1844 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1859 YPO1860 YPO1860 ail ail 2109269 2109820 + attachment invasion locus protein Similar to Yersinia enterocolitica attachment invasion locus protein precursor Ail SW:AIL_YEREN (P16454) (178 aa) fasta scores: E(): 3.3e-28%2C 47.8%25 id in 184 aa%2Cand to Yersinia pseudotuberculosis attachment invasion locus protein precursor Ail SW:AIL_YERPS (Q56957) (182 aa) fasta scores: E(): 5.8e-26%2C 44.8%25 id in 183 aa. Similar to YPO2905%2C YPO2190 and YPO2506 gene gene1845 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1860 YPO1861 YPO1861 YPO1861 2109859 2110041 - hypothetical protein No significant database hits gene gene1846 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1861 YPO1862 YPO1862 YPO1862 2110160 2110414 + putative membrane protein No significant database matches gene gene1847 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1862 YPO1863 YPO1863 glpM glpM 2110442 2110783 - putative membrane protein Similar to Escherichia coli hypothetical 12.5 kDa protein in pntA-rstA intergenic region YdgC SW:YDGC_ECOLI (P52110) (111 aa) fasta scores: E(): 1.1e-26%2C 58.6%25 id in 111 aa%2C and to Pseudomonas aeruginosa membrane protein GlpM SW:GLPM_PSEAE (P52112) (109 aa) fasta scores: E(): 4.8e-25%2C56.0%25 id in 109 aa. In P. aeruginosa%2C GlpM could play a role in alginate biosynthesis. J. Bacteriol.(1995) 177:4801-4804(1995) gene gene1848 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1863 YPO1864 YPO1864 YPO1864 2110911 2111135 - conserved hypothetical protein Similar to Escherichia coli hypothetical protein YecF SW:YECF_ECOLI (P46120) (74 aa) fasta scores: E(): 1.4e-16%2C 60.8%25 id in 74 aa gene gene1849 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1864 YPO1865 YPO1865 uvrY uvrY 2111798 2112454 + response regulator protein Similar to Escherichia coli UvrY protein SW:UVRY_ECOLI (P07027) (218 aa) fasta scores: E(): 0%2C 82.9%25 id in 217 aa%2C and to Salmonella typhimurium SirA TR:P96058 (EMBL:U67869) (218 aa) fasta scores: E(): 0%2C 83.9%25 id in 217 aa gene gene1850 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1865 YPO1866 YPO1866 uvrC uvrC 2112447 2114279 + excinuclease ABC subunit C Similar to Escherichia coli excinuclease ABC subunit C UvrC SW:UVRC_ECOLI (P07028) (610 aa) fasta scores: E(): 0%2C 83.1%25 id in 610 aa%2C and to Salmonella typhimurium excinuclease ABC subunit C SW:UVRC_SALTY (O66041) (608 aa) fasta scores: E(): 0%2C 81.7%25 id in 606 aa gene gene1851 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1866 YPO1867 YPO1867 pgsA pgsA 2114338 2114886 + CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase Similar to Escherichia coli CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase PgsA SW:PGSA_ECOLI (P06978) (181 aa) fasta scores: E(): 0%2C 75.0%25 id in 180 aa gene gene1852 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1867 YPO1868 YPO1868 YPO1868 2115626 2116141 - hypothetical protein Weakly similar to the C-terminal region of Bacteriophage 434 integrase SW:VINT_BP434 (P27078) (356 aa) fasta scores: E(): 0.021%2C 23.8%25 id in 172 aa%2C and to Escherichia coli prophage lambda integrase SW:INTE_ECOLI (P75969) (375 aa) fasta scores: E(): 3.7%2C 23.3%25 id in 163 aa gene gene1853 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1868 YPO1869 YPO1869 YPO1869 2116252 2116479 + replicative DNA helicase (partial) Similar to the C-terminal region of Bacteriophage P22 replicative DNA helicase SW:VG12_BPP22 (P03006) (458 aa) fasta scores: E(): 8.8e-12%2C 57.7%25 id in 71 aa%3B~was marked partial gene gene1854 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1869 YPO1870 YPO1870 YPO1870 2116848 2116994 + hypothetical protein No significant database hits gene gene1855 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1870 YPO1871 YPO1871 YPO1871 2117816 2117974 - hypothetical protein No significant database hits gene gene1856 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1871 YPO1872 YPO1872 YPO1872 2118003 2118347 - conserved hypothetical protein Similar to the N-terminal region of Escherichia coli hypothetical protein YhhZ SW:YHHZ_ECOLI (P46855) (392 aa) fasta scores: E(): 8.2e-14%2C 45.9%25 id in 109 aa%2C and to Escherichia coli hypothetical protein TR:O52671 (EMBL:AF044503) (172 aa) fasta scores: E(): 0.042%2C 30.1%25 id in 123 aa. Similar to YPO2793%2C YPO2962 and YPO2868. gene gene1857 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1872 YPO1873 YPO1873 tnpA tnpA 2118567 2119526 - putative transposase Similar to Pseudomonas syringae transposase TnpA TR:Q52559 (EMBL:L48985) (343 aa) fasta scores: E(): 0%2C60.5%25 id in 319 aa%2C and to Mycobacterium intracellulare transposase TR:Q49592 (EMBL:L10239) (340 aa) fasta scores: E(): 0%2C 37.4%25 id in 302 aa gene gene1858 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1873 YPO1874 YPO1874 YPO1874 2119598 2120044 - conserved hypothetical protein Similar to Pseudomonas syringae ORF within IS1240 TR:Q52560 (EMBL:L48985) (153 aa) fasta scores: E(): 5.3e-25%2C 49.3%25 id in 150 aa%2C and to Pseudomonas putida hypothetical protein TR:Q9WWW7 (EMBL:AJ233397) (154 aa) fasta scores: E(): 2.6e-22%2C 49.3%25 id in 142 aa gene gene1859 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1874 YPO1875 YPO1875 YPO1875 2120128 2120268 - putative major tail sheath protein (partial) Similar to the N-terminal parts of Bacteriophage P2 major tail sheath protein FI SW:VPF1_BPP2 (P22501) (395 aa) fasta scores: E(): 4.2e-12%2C 76.2%25 id in 42 aa%2C and to Salmonella typhi hypothetical 42.1 kDa protein TR:Q9RPM5 (EMBL:AF153829) (390 aa) fasta scores: E(): 6.3e-12%2C 74.4%25 id in 39 aa%3B~was marked partial gene gene1860 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1875 YPO1876 YPO1876 YPO1876 2120433 2120687 - putative membrane protein Similar to the C-terminal regions of Euglena gracilis putative NADH dehydrogenase subunit 6 Nd6 TR:Q9XN18 (EMBL:AF156178) (161 aa) fasta scores: E(): 4.5%2C25.7%25 id in 74 aa%2C and to Dorymyrmex insanus cytochrome B TR:Q9MP31 (EMBL:AF146717) (238 aa) fasta scores: E(): 8.4%2C31.9%25 id in 72 aa gene gene1861 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1876 YPO1877 YPO1877 YPO1877 2120692 2120997 - hypothetical protein Weakly similar to internal regions of Nicotiana tabacum cytochrome P450 Hsr515 TR:Q42959 (EMBL:X96784) (498 aa) fasta scores: E(): 1.8%2C 25.3%25 id in 83 aa%2C and to Human poliovirus 1 polyprotein TR:O92270 (EMBL:AF083931) (302 aa) fasta scores: E(): 5.6%2C 30.3%25 id in 66 aa gene gene1862 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1877 YPO1878 YPO1878 YPO1878 2120994 2121209 - putative membrane protein No significant database matches gene gene1863 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1878 YPO1879 YPO1879 YPO1879 2121644 2121931 - hypothetical protein Weakly similar to Escherichia coli hypothetical protein YfdL SW:YFDL_ECOLI (P76508) (172 aa) fasta scores: E(): 0.076%2C 37.5%25 id in 56 aa%2C and to Caenorhabditis elegans C05E7.3 protein TR:Q17671 (EMBL:Z67879) (143 aa) fasta scores: E(): 0.98%2C 32.2%25 id in 87 aa gene gene1864 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1879 YPO1880 YPO1880 YPO1880 2121948 2122247 - phage-related protein Similar to Bacteriophage P2 baseplate assembly protein W SW:VPW_BPP2 (P51768) (115 aa) fasta scores: E(): 2.8e-18%2C 62.2%25 id in 82 aa%2C and to Wolbachia sp. wKue Gp25 protein TR:Q9JML7 (EMBL:AB036666) (108 aa) fasta scores: E(): 3.3e-08%2C 41.1%25 id in 95 aa gene gene1865 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1880 YPO1881 YPO1881 YPO1881 2122244 2122603 - phage-related protein Similar to the central regions of Bacteriophage P2 baseplate assembly protein V SW:VPV_BPP2 (P31340) (211 aa) fasta scores: E(): 4.6e-14%2C 55.4%25 id in 74 aa%2C and to Wolbachia sp. wKue Gp24 protein TR:Q9JML8 (EMBL:AB036666) (154 aa) fasta scores: E(): 3.1e-10%2C 45.1%25 id in 82 aa gene gene1866 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1881 YPO1882 YPO1882 YPO1882 2122887 2123177 + conserved hypothetical protein Similar to Neisseria meningitidis hypothetical protein NMA1326 TR:Q9JUG2 (EMBL:AL162755) (100 aa) fasta scores: E(): 8.7e-06%2C 42.2%25 id in 83 aa%2C and to Xylella fastidiosa hypothetical protein XF1563 TR:Q9PD17 (EMBL:AE003986) (112 aa) fasta scores: E(): 2.2e-05%2C 38.4%25 id in 73 aa gene gene1867 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1882 YPO1883 YPO1883 YPO1883 2123243 2124319 + hypothetical protein (pseudogene) No significant database matches. Due to the absence of an appropriate stop codon%2Cother than within the IS element%2Cthis CDS is likely to have been disrupted by the adjoining IS285 element. It is difficult to accurately predict the effect this insertion would have on protein function. pseudogene gene1868 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1883 YPO1884 YPO1884 y1062 y1062 2124367 2125565 + transposase (pseudogene) Similar to the previously sequenced Yersinia pestis transposase Y1062 or Ypmt1.80C TR:O68779 (EMBL:AF053947) (402 aa) fasta scores: E(): 1.4e-149%2C 94.776%25 id in 402 aa%2Cand to Escherichia coli transposase-like protein TnpA TR:Q9F9X3 (EMBL:AF143819) (402 aa) fasta scores: E(): 2.8e-120%2C 74.129%25 id in 402 aa. There is a frameshift following codon 286. The sequence has been checked and is believed to be correct pseudogene gene1869 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1884 YPO1886 YPO1886 YPO1886 2125983 2126552 - putative exported protein Weak similarity to Homo sapiens cdna: flj22977 FIS%2Cclone kat11312 TR:BAB15514 (EMBL:AK026630) (233 aa) fasta scores: E(): 2.5%2C 25.9%25 id in 158 aa gene gene1870 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1886 YPO1887 YPO1887 YPO1887 2126564 2126998 - hypothetical protein Weakly similar to the C-terminal region of Canis familiaris microsomal signal peptidase 23 kDa subunit SW:SPC2_CANFA (P12280) (180 aa) fasta scores: E(): 4.5%2C28.3%25 id in 106 aa gene gene1871 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1887 YPO1888 YPO1888 YPO1888 2127233 2127622 + putative transposase (partial) Partial CDS (lacks approximately 100 amino acids at the N-terminal end). There is a stop codon at position 42. Similar to C-terminal region of Escherichia coli hypothetical 26.3 kDa protein TR:O53006 (EMBL:Y07545) (225 aa) fasta scores: E(): 0%2C 73.7%25 id in 114 aa%2C and to Vibrio cholerae putative transposase TR:Q9L987 (EMBL:AF179596) (307 aa) fasta scores: E(): 2.3e-32%2C 69.9%25 id in 113 aa%3B~was marked partial mRNA gene1872 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1888 YPO1889 YPO1889 YPO1889 2127649 2127780 + putative transposase (partial) Partial CDS. Similar to the N-terminal regions of Yersinia enterocolitica IS1400 transposase A Trp1400A TR:Q9X9H8 (EMBL:AJ132945) (96 aa) fasta scores: E(): 2.5e-11%2C 73.2%25 id in 41 aa%2C and to Salmonella enteritidis transposase OrfA TR:O06945 (EMBL:Z83734) (88 aa) fasta scores: E(): 3.7e-07%2C 69.7%25 id in 33 aa%3B~was marked partial gene gene1873 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1889 YPO1890 YPO1890 YPO1890 2127967 2128764 + GntR-family putative transcriptional regulatory protein Similar to Deinococcus radiodurans GntR-family transcriptional regulator DRA0211 TR:Q9RYU6 (EMBL:AE001863) (279 aa) fasta scores: E(): 8.7e-28%2C 40.1%25 id in 232 aa%2Cand to Escherichia coli hypothetical transcriptional regulator YegW SW:YEGW_ECOLI (P76420) (248 aa) fasta scores: E(): 9.4e-18%2C 29.2%25 id in 226 aa gene gene1874 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1890 YPO1891 YPO1891 YPO1891 2128734 2129024 - hypothetical protein Weakly similar to the C-terminal regions of Vibrio cholerae ROK family protein Vc1782 TR:Q9KR61 (EMBL:AE004255) (287 aa) fasta scores: E(): 0.0065%2C 32.8%25 id in 64 aa%2C and to Human immunodeficiency virus type 1 envelope protein (fragment) TR:Q9PY35 (EMBL:UNNKOWN ACCESSION) (98 aa) fasta scores: E(): 2.2%2C 27.1%25 id in 70 aa gene gene1875 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1891 YPO1892 YPO1892 YPO1892 2129432 2130445 + putative oxidoreductase Similar to Methanobacterium thermoautotrophicum 3-chlorobenzoate-3%2C4-dioxygenase dyhydrogenase related protein Mth875 TR:O26961 (EMBL:AE000863) (318 aa) fasta scores: E(): 5.4e-18%2C 29.3%25 id in 335 aa%2C and to Pyrococcus abyssi NADH-dependent dehydrogenase homolog Pab0775 TR:Q9UZI3 (EMBL:AJ248286) (315 aa) fasta scores: E(): 3.9e-16%2C 26.9%25 id in 338 aa gene gene1876 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1892 YPO1893 YPO1893 YPO1893 2130475 2131743 + putative exported solute-binding protein Previously sequenced as Yersinia pestis propable sugar ABC transporter binding protein Orf83 TR:Q9ZC22 (EMBL:AL031866) (422 aa) fasta scores: E(): 0%2C 100.0%25 id in 422 aa gene gene1877 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1893 YPO1894 YPO1894 YPO1894 2131810 2132670 + putative binding-protein-dependent transport system%2C inner membrane component Previously sequenced as Yersinia pestis probable ABC transporter protein Orf82 (EMBL:AL031866) (286 aa) fasta scores: E(): 0%2C 100.0%25 id in 286 aa gene gene1878 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1894 YPO1895 YPO1895 YPO1895 2132663 2133490 + putative binding-protein-dependent transport system%2C inner membrane component Previously sequenced as Yersinia pestis inner membrane transport protein TR:Q9ZC24 (EMBL:AL031866) (275 aa) fasta scores: E(): 0%2C 100.0%25 id in 275 aa. Similar to Pseudomonas fluorescens probable ABC transporter permease protein MtlG TR:O30493 (EMBL:AF007800) (276 aa) fasta scores: E(): 0%2C 39.5%25 id in 258 aa gene gene1879 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1895 YPO1896 YPO1896 YPO1896 2133515 2134405 + putative binding-protein-dependent transport system%2C ATP-binding component Previously sequenced as Yersinia pestis hypothetical protein Orf80 TR:Q9ZC25 (EMBL:AL031866) (296 aa) fasta scores: E(): 0%2C 100.0%25 id in 296 aa. Similar to Agrobacterium radiobacter lactose transport ATP-binding protein LacK SW:LACK_AGRRD (Q01937) (363 aa) fasta scores: E(): 0%2C 63.1%25 id in 263 aa gene gene1880 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1896 YPO1897 YPO1897 YPO1897 2134642 2134866 - hypothetical protein No significant database hits gene gene1881 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1897 YPO1898 YPO1898 YPO1898 2134882 2135067 - conserved hypothetical protein Similar to Yersinia pseudotuberculosis hypothetical protein TR:Q9X9G2 (EMBL:AJ236887) (68 aa) fasta scores: E(): 1.4e-18%2C 95.9%25 id in 49 aa gene gene1882 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1898 YPO1899 YPO1899 YPO1899 2135261 2135488 - hypothetical protein Similar to the N-terminal region of Rattus norvegicus Fasl receptor precursor SW:FASA_RAT (Q63199) (324 aa) fasta scores: E(): 1.2%2C 30.3%25 id in 76 aa gene gene1883 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1899 YPO1900 YPO1900 y1093 y1093 2135545 2136567 + transposase for insertion sequence IS100 Similar to Escherichia coli transposase for insertion sequence element IS21 IstA SW:ISTA_ECOLI (P15025) (390 aa) fasta scores: E(): 3e-27%2C 33.1%25 id in 329 aa. Identical to the previously sequenced Yersinia pestis%2CYersinia pseudotuberculosis%2C and Escherichia coli pesticin plasmid insertion sequence transposase Y1055 TR:P74993 (EMBL:U59875) (340 aa) fasta scores: E(): 0%2C 100.0%25 id in 340 aa gene gene1884 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1900 YPO1901 YPO1901 ypmt1.57c ypmt1.57c 2136564 2137346 + insertion sequence IS100%2C ATP-binding protein Similar to Escherichia coli insertion sequence IS21 putative ATP-binding protein%2C IstB SW:ISTB_ECOLI (P15026) (265 aa) fasta scores: E(): 0%2C 47.4%25 id in 249 aa. Also almost identical to Yersinia pestis and Escherichia coli putative IS100 transposase ypmt1.57c TR:Q9R3L5 (EMBL:AL117211) (260 aa) fasta scores: E(): 0%2C 99.6%25 id in 260 aa. gene gene1885 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1901 YPO1902 YPO1902 YPO1902 2137945 2138526 - hypothetical protein Previously sequenced as Yersinia pestis hypothetical protein ORF 77 TR:Q9Z381 (EMBL:AL031866) (193 aa) fasta scores: E(): 0%2C 100.0%25 id in 193 aa. Identical to Yersinia pseudotuberculosis hypothetical 18.9 kDa protein TR:Q9X9G3 (EMBL:AJ236887) (166 aa) fasta scores: E(): 0%2C 100.0%25 id in 166 aa gene gene1886 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1902 YPO1903 YPO1903 YPO1903 2138532 2138696 - hypothetical protein Previously sequenced as Yersinia pestis hypothetical 6.0 kDa protein TR:Q9ZFZ7 (EMBL:AF091251) (54 aa) fasta scores: E(): 1.7e-23%2C 100.0%25 id in 54 aa. Identical to Yersinia pseudotuberculosis hypothetical 6.9 kDa protein TR:Q9X9G4 (EMBL:AJ236887) (61 aa) fasta scores: E(): 1.9e-23%2C 100.0%25 id in 54 aa gene gene1887 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1903 YPO1904 YPO1904 YPO1904 2138715 2138996 - putative transcriptional regulator Similar to the previously sequenced Yersinia pestis hypothetical 10.9 kDa protein TR:Q9ZFZ8 (EMBL:AF091251) (93 aa) fasta scores: E(): 0%2C 98.9%25 id in 93 aa. Identical to Yersinia pseudotuberculosis DNA-binding protein TR:Q9X9G5 (EMBL:AJ236887) (61 aa) fasta scores: E(): 1.6e-24%2C 100.0%25 id in 61 aa. The Y. pseudotuberculosis ORF starts at an internal methionine (codon 33) gene gene1888 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1904 YPO1905 YPO1905 YPO1905 2139040 2139594 - hypothetical protein Similar to the previously sequenced Yersinia pestis hypothetical 21.1 kDa protein TR:Q9ZFZ9 (EMBL:AF091251) (184 aa) fasta scores: E(): 0%2C 99.5%25 id in 184 aa gene gene1889 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1905 YPO1905a YPO1905a YPO1905a 2139602 2139967 - hypothetical protein Previously sequenced as Yersinia pestis hypothetical 14.8 kDa protein TR:Q9ZG00 (EMBL:AF091251) (128 aa) fasta scores: E(): 0%2C 100.0%25 id in 121 aa gene gene1890 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1905a YPO1906 YPO1906 fyuA fyuA 2140840 2142861 - pesticin/yersiniabactin receptor protein Similar to the previously sequenced Yersinia pestis pesticin receptor protein FyuA or Psn SW:FYUA_YERPE (P46359) (673 aa) fasta scores: E(): 0%2C 99.7%25 id in 673 aa%2Cand to Yersinia pseudotuberculosis%2C and Escherichia coli FyuA precursor TR:Q57303 (EMBL:Z35107) (673 aa) fasta scores: E(): 0%2C 99.9%25 id in 673 aa gene gene1891 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1906 YPO1907 YPO1907 irp5 irp5 2142992 2144569 - yersiniabactin siderophore biosynthetic protein Previously sequenced: Yersinia pestis yersiniabactin siderophore biosynthetic protein YbtE TR:Q56950 (EMBL:U50364) (525 aa) fasta scores: E(): 0%2C 100.0%25 id in 525 aa. Similar to Yersinia enterocolitica Irp5 protein TR:O54514 (EMBL:Y12527) (525 aa) fasta scores: E(): 0%2C97.9%25 id in 525 aa gene gene1892 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1907 YPO1908 YPO1908 irp4 irp4 2144573 2145376 - yersiniabactin biosynthetic protein YbtT Similar to the previously sequenced Yersinia pestis yersiniabactin biosynthetic protein YbtT TR:Q56949 (EMBL:U50364) (267 aa) fasta scores: E(): 0%2C 99.6%25 id in 267 aa%2C and to Yersinia enterocolitica Irp4 protein TR:O54513 (EMBL:Y12527) (267 aa) fasta scores: E(): 0%2C95.5%25 id in 267 aa gene gene1893 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1908 YPO1909 YPO1909 irp3 irp3 2145373 2146473 - yersiniabactin biosynthetic protein YbtU Previously sequenced as Yersinia pestis yersiniabactin biosynthetic protein YbtU TR:Q9Z3C6 (EMBL:AL031866) (365 aa) fasta scores: E(): 0%2C 100.0%25 id in 365 aa. Similar to Yersinia enterocolitica Irp3 protein TR:O54512 (EMBL:Y12527) (365 aa) fasta scores: E(): 0%2C97.8%25 id in 365 aa gene gene1894 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1909 YPO1910 YPO1910 irp1 irp1 2146470 2155961 - yersiniabactin biosynthetic protein Previously sequenced as Yersinia pestis yersiniabactin biosynthetic protein Irp1 TR:Q9Z373 (EMBL:AL031866) (3163 aa) fasta scores: E(): 0%2C 100.0%25 id in 3163 aa. Similar to Yersinia enterocolitica HMWP1 protein Irp1 TR:O54511 (EMBL:Y12527) (3161 aa) fasta scores: E(): 0%2C 97.9%25 id in 3163 aa gene gene1895 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1910 YPO1911 YPO1911 irp2 irp2 2156049 2162156 - yersiniabactin biosynthetic protein Previously sequenced as Yersinia pestis yersiniabactin biosynthetic protein Irp2 TR:Q9Z399 (EMBL:AL031866) (2041 aa) fasta scores: E(): 0%2C 100.0%25 id in 2035 aa. Similar to Yersinia enterocolitica high-molecular-weight protein 2 Irp2 SW:HMP2_YEREN (P48633) (2035 aa) fasta scores: E(): 0%2C 98.6%25 id in 2035 aa. The previously sequenced Yersinia pestis Irp2 ORF starts at a valine situated 6 aa upstream from the methionine. However%2Cthe methionine start%2C has a good ribosome-binding site gene gene1896 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1911 YPO1912 YPO1912 ybtA ybtA 2162347 2163306 - transcriptional regulator YbtA Previously sequenced as Yersinia pestis yersiniabactin transcriptional regulator YbtA TR:Q56951 (EMBL:U50452) (319 aa) fasta scores: E(): 0%2C 100.0%25 id in 319 aa. Similar to Yersinia enterocolitica yersiniabactin transcriptional regulator YbtA TR:Q9X9I4 (EMBL:AJ132668) (319 aa) fasta scores: E(): 0%2C 99.1%25 id in 319 aa gene gene1897 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1912 YPO1913 YPO1913 irp6 irp6 2163473 2165275 + lipoprotein inner membrane ABC-transporter Previously sequenced as Yersinia pestis lipoprotein inner membrane ABC-transporter YbtP TR:Q9R7V3 (EMBL:AL031866) (600 aa) fasta scores: E(): 0%2C 100.0%25 id in 600 aa. Similar to Yersinia enterocolitica lipoprotein inner membrane ABC-transporter Irp6 TR:Q9X9I5 (EMBL:AJ132668) (600 aa) fasta scores: E(): 0%2C 98.0%25 id in 600 aa gene gene1898 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1913 YPO1914 YPO1914 irp7 irp7 2165262 2167064 + inner membrane ABC-transporter YbtQ Previously sequenced as Yersinia pestis inner membrane ABC-transporter YbtQ TR:Q9Z375 (EMBL:AL031866) (600 aa) fasta scores: E(): 0%2C 100.0%25 id in 600 aa. Similar to Yersinia enterocolitica inner membrane ABC-transporter Irp7 TR:Q9X9I6 (EMBL:AJ132668) (600 aa) fasta scores: E(): 0%2C 98.8%25 id in 600 aa gene gene1899 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1914 YPO1915 YPO1915 irp8 irp8 2167057 2168337 + putative signal transducer Previously sequenced as Yersinia pestis putative signal transducer YbtX TR:Q9ZC28 (EMBL:AL031866) (462 aa) fasta scores: E(): 0%2C 100.0%25 id in 426 aa. similar to Yersinia enterocolitica signal transducer Irp8 TR:Q9X9I7 (EMBL:AJ132668) (462 aa) fasta scores: E(): 0%2C 98.1%25 id in 426 aa. There is a discrepancy with the start codon. The previously sequenced Y.pestis and Y. enterocolitica ORFs start at a methionine 36 aa upstream of the predicted start for this CDS. The selection for the alternative downstream methionine start codon for this CDS was supported by Y. pestis codon usage and the presence of a good ribosome binding site gene gene1900 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1915 YPO1916 YPO1916 irp9 irp9 2168365 2169669 + putative salicylate synthetase Previously sequenced as Yersinia pestis putative salicylate synthetase YbtS TR:Q9Z396 (EMBL:AL031866) (434 aa) fasta scores: E(): 0%2C 100.0%25 id in 434 aa. Similar to Yersinia enterocolitica salicylate synthetase Irp9 TR:Q9X9I8 (EMBL:AJ132668) (434 aa) fasta scores: E(): 0%2C99.3%25 id in 434 aa gene gene1901 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1916 YPO1917 YPO1917 int int 2169863 2171125 - integrase Previously sequenced Yersinia pestis integrase Int TR:Q9Z3B4 (EMBL:AL031866) (420 aa) fasta scores: E(): 0%2C100.0%25 id in 420 aa. Similar to Yersinia pseudotuberculosis integrase Int TR:Q9ZEX4 (EMBL:AJ009592) (420 aa) fasta scores: E(): 0%2C 99.8%25 id in 420 aa gene gene1902 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1917 YPO1918 YPO1918 YPO1918 2171665 2172405 - probable pili assembly chaperone Previously sequenced as Yersinia pestis hypothetical protein TR:Q9Z394 (EMBL:AL031866) (246 aa) fasta scores: E(): 0%2C 100.0%25 id in 246 aa gene gene1903 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1918 YPO1919 YPO1919 YPO1919 2172402 2173751 - putative exported protein Previously sequenced as Yersinia pestis hypothetical protein TR:Q9ZC29 (EMBL:AL031866) (449 aa) fasta scores: E(): 0%2C 100.0%25 id in 449 aa. Similar to Pseudomonas aeruginosa hypothetical protein PA2131 TR:AAG05519 (EMBL:AE004640) (453 aa) fasta scores: E(): 1.1e-28%2C 34.1%25 id in 422 aa gene gene1904 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1919 YPO1920 YPO1920 YPO1920 2173767 2176358 - probable fimbrial usher protein Previously sequenced as Yersinia pestis hypothetical protein TR:Q9ZC30 (EMBL:AL031866) (863 aa) fasta scores: E(): 0%2C 99.9%25 id in 863 aa. Similar to Escherichia coli outer membrane usher protein FocD precursor SW:FOCD_ECOLI (P46009) (875 aa) fasta scores: E(): 0%2C 29.8%25 id in 857 aa gene gene1905 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1920 YPO1921 YPO1921 YPO1921 2176407 2177051 - probable pili assembly chaperone Previously sequenced as Yersinia pestis hypothetical protein TR:Q9ZC31 (EMBL:AL031866) (214 aa) fasta scores: E(): 0%2C 100.0%25 id in 214 aa. Similar to Haemophilus influenzae chaperone protein HifB precursor SW:HFB2_HAEIN (P45991) (241 aa) fasta scores: E(): 3.1e-16%2C 30.7%25 id in 228 aa gene gene1906 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1921 YPO1922 YPO1922 YPO1922 2177144 2177674 - fimbrial protein Previously sequenced as Yersinia pestis hypothetical protein TR:Q9ZC32 (EMBL:AL031866) (176 aa) fasta scores: E(): 0%2C 100.0%25 id in 176 aa. Similar to Escherichia coli pilin precursor TR:Q57228 (EMBL:L43373) (181 aa) fasta scores: E(): 1e-11%2C 37.9%25 id in 177 aa. Similar to YPO3877 (46.5%25 identity in 127 aa overlap) gene gene1907 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1922 YPO1923 YPO1923 YPO1923 2178187 2181914 - putative sensor protein (pseudogene) Similar to Bordetella parapertussis virulence sensor protein BvgS precursor SW:BVGS_BORPA (P40330) (1238 aa) fasta scores: E(): 0%2C 28.9%25 id in 1223 aa%2C and to Bordetella pertussis virulence sensor protein BvgS precursor SW:BVGS_BORPE (P16575) (1238 aa) fasta scores: E(): 0%2C 29.8%25 id in 1156 aa. Identical over its N-terminal and C-terminal regions to the previously sequenced Yersinia pestis proteins TR:Q9ZC34 and TR:Q9ZC33%2C respectively. There is a possible frameshift after codon 419. The sequence has been checked and is believed to be correct pseudogene gene1908 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1923 YPO1925 YPO1925 YPO1925 2182012 2182644 - putative two-component response regulator Previously sequenced as Yersinia pestis protein TR:Q9ZC35 (EMBL:AL031866) (210 aa) fasta scores: E(): 0%2C100.0%25 id in 210 aa. Similar to Bordetella pertussis putative positive transcription regulator BvgA SW:BVGA_BORPE (P16574) (209 aa) fasta scores: E(): 2.7e-28%2C40.2%25 id in 209 aa%2C and to Escherichia coli fimbriae Z protein FimZ SW:FIMZ_ECOLI (P21502) (210 aa) fasta scores: E(): 0%2C 48.3%25 id in 207 aa gene gene1909 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1925 YPO1926 YPO1926 YPO1926 2183470 2184792 - putative 4-hydroxybutyrate coenzyme A transferase Previously sequenced as Yersinia pestis protein TR:Q9ZC36 (EMBL:AL031866) (440 aa) fasta scores: E(): 0%2C100.0%25 id in 440 aa. Similar to Clostridium kluyveri 4-hydroxybutyrate coenzyme A transferase Cat2 SW:CAT2_CLOKL (P38942) (429 aa) fasta scores: E(): 0%2C 40.0%25 id in 440 aa gene gene1910 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1926 YPO1927 YPO1927 YPO1927 2184815 2185357 - putative transcription regulatory protein Previously sequenced as Yersinia pestis hypothetical protein TR:Q9ZC37 (EMBL:AL031866) (180 aa) fasta scores: E(): 0%2C 100.0%25 id in 180 aa. Similar to Streptomyces hygroscopicus varascomyceticus transcription regulator FkbR2 TR:Q9KIF1 (EMBL:AF235504) (175 aa) fasta scores: E(): 0%2C 58.8%25 id in 153 aa gene gene1911 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1927 YPO1928 YPO1928 YPO1928 2185407 2186249 - putative citrate lyase beta chain Previously sequenced as Yersinia pestis hypothetical protein TR:Q9ZC38 (EMBL:AL031866) (280 aa) fasta scores: E(): 0%2C 100.0%25 id in 280 aa. Similar to Klebsiella pneumoniae citrate lyase beta chain CitE SW:CILB_KLEPN (P17725) (289 aa) fasta scores: E(): 1.7e-21%2C 33.6%25 id in 286 aa gene gene1912 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1928 YPO1929 YPO1929 YPO1929 2186344 2187222 + probable LysR-family transcriptional regulator Previously sequenced as Yersinia pestis hypothetical protein TR:Q9ZC39 (EMBL:AL031866) (294 aa) fasta scores: E(): 0%2C 100.0%25 id in 292 aa. Similar to Salmonella typhimurium putative transcriptional regulator StmR TR:Q9RQ20 (EMBL:AF134978) (292 aa) fasta scores: E(): 0%2C78.6%25 id in 290 aa gene gene1913 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1929 YPO1930 YPO1930 YPO1930 2187297 2187770 - putative lipoprotein Previously sequenced Yersinia pestis hypothetical protein TR:Q9ZC40 (EMBL:AL031866) (157 aa) fasta scores: E(): 0%2C 100.0%25 id in 157 aa gene gene1914 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1930 YPO1931 YPO1931 YPO1931 2187795 2188355 - hypothetical protein Previously sequenced Yersinia pestis hypothetical protein TR:Q9ZC41 (EMBL:AL031866) (186 aa) fasta scores: E(): 0%2C 100.0%25 id in 186 aa gene gene1915 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1931 YPO1932 YPO1932 YPO1932 2188575 2189804 - putative sugar transporter Previously sequenced as Yersinia pestis hypothetical protein TR:Q9ZC42 (EMBL:AL031866) (409 aa) fasta scores: E(): 0%2C 100.0%25 id in 409 aa. Similar to Streptomyces coelicolor putative transmembrane transport protein SC6D7.28C TR:Q9RKX0 (EMBL:AL133213) (440 aa) fasta scores: E(): 0%2C 50.0%25 id in 414 aa gene gene1916 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1932 YPO1933 YPO1933 YPO1933 2189870 2190739 - putative dicarboxylic acid hydrolase Previously sequenced as Yersinia pestis hypothetical protein TR:Q9ZC43 (EMBL:AL031866) (289 aa) fasta scores: E(): 0%2C 100.0%25 id in 289 aa. Similar to Sphingomonas sp. LB126 putative 2-pyrone-4%2C6-dicarboxylic acid hydrolase FldB TR:Q9L399 (EMBL:AJ277295) (295 aa) fasta scores: E(): 2.6e-27%2C 32.5%25 id in 280 aa gene gene1917 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1933 YPO1934 YPO1934 YPO1934 2190851 2191813 + putative LysR-family transcriptional regulatory protein Previously sequenced as Yersinia pestis hypothetical protein TR:Q9ZC44 (EMBL:AL031866) (320 aa) fasta scores: E(): 0%2C 100.0%25 id in 320 aa. Similar to Escherichia coli hypothetical transcriptional regulator YneJ SW:YNEJ_ECOLI (P77309) (293 aa) fasta scores: E(): 8.7e-14%2C 27.0%25 id in 293 aa gene gene1918 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1934 YPO1935 YPO1935 YPO1935 2192118 2192717 - putative Na(+)-translocating NADH-quinone reductase subunit E Previously sequenced as Yersinia pestis hypothetical protein TR:Q9ZC45 (EMBL:AL031866) (199 aa) fasta scores: E(): 0%2C 100.0%25 id in 199 aa. Similar to Vibrio alginolyticus Na(+)-translocating NADH-quinone reductase subunit E NqrE or Nqr5 SW:NQRE_VIBAL (Q56589) (198 aa) fasta scores: E(): 0%2C 67.5%25 id in 197 aa. Similar to YPO3236 (66.0%25 identity in 197 aa overlap) gene gene1919 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1935 YPO1936 YPO1936 YPO1936 2193069 2194229 + putative aminotransferase Previously sequenced as Yersinia pestis hypothetical protein TR:Q9ZC46 (EMBL:AL031866) (386 aa) fasta scores: E(): 0%2C 100.0%25 id in 386 aa. Similar to Bacillus halodurans aminotransferase Bh1127 TR:Q9KDT4 (EMBL:AP001511) (400 aa) fasta scores: E(): 0%2C 35.8%25 id in 391 aa gene gene1920 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1936 YPO1937 YPO1937 ansP ansP 2194425 2195951 - L-asparagine permease Previously sequenced as Yersinia pestis probable L-asparagine permease AnsP TR:Q9ZC47 (EMBL:AL031866) (507 aa) fasta scores: E(): 0%2C 100.0%25 id in 507 aa. Similar to Salmonella typhimurium L-asparagine permease AnsP SW:ANSP_SALTY (P40812) (497 aa) fasta scores: E(): 0%2C 79.6%25 id in 489 aa gene gene1921 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1937 YPO1938 YPO1938 YPO1938 2196676 2197446 - probable deoR-family transcriptional regulatory protein Previously sequenced as Yersinia pestis hypothetical protein TR:Q9ZC48 (EMBL:AL031866) (256 aa) fasta scores: E(): 0%2C 99.6%25 id in 256 aa. Similar to Escherichia coli hypothetical transcriptional regulator YgbI SW:YGBI_ECOLI (P52598) (265 aa) fasta scores: E(): 0%2C 61.9%25 id in 252 aa gene gene1922 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1938 YPO1939 YPO1939 YPO1939 2198642 2199664 + putative glutaminase Previously sequenced as Yersinia pestis probable glutaminase TR:Q9ZC49 (EMBL:AL031866) (340 aa) fasta scores: E(): 0%2C 100.0%25 id in 340 aa. Similar to Rhizobium etli thermolabile glutaminase TR:O87405 (EMBL:AF057158) (309 aa) fasta scores: E(): 4.5e-27%2C 34.6%25 id in 292 aa gene gene1923 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1939 YPO1940 YPO1940 YPO1940 2199775 2201415 + putative membrane protein Previously sequenced as Yersinia pestis hypothetical protein TR:Q9ZC50 (EMBL:AL031866) (546 aa) fasta scores: E(): 0%2C 100.0%25 id in 546 aa. Similar to Bacillus subtilis hypothetical protein YfiU TR:O31563 (EMBL:Z99108) (518 aa) fasta scores: E(): 3.8e-13%2C 25.3%25 id in 538 aa gene gene1924 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1940 YPO1941 YPO1941 YPO1941 2201996 2203915 + putative membrane protein Previously sequenced as Yersinia pestis hypothetical protein TR:Q9ZC51 (EMBL:AL031866) (639 aa) fasta scores: E(): 0%2C 100.0%25 id in 639 aa. Similar to Campylobacter jejuni putative integral membrane protein Cj1658 TR:Q9PM19 (EMBL:AL139079) (696 aa) fasta scores: E(): 0%2C 31.9%25 id in 706 aa gene gene1925 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1941 YPO1942 YPO1942 YPO1942 2204119 2204646 + putative exported protein Previously sequenced as Yersinia pestis hypothetical protein TR:Q9ZC52 (EMBL:AL031866) (175 aa) fasta scores: E(): 0%2C 100.0%25 id in 175 aa. Similar to Campylobacter jejuni periplasmic protein P19 TR:Q9PM18 (EMBL:AL139079) (179 aa) fasta scores: E(): 0%2C 57.9%25 id in 178 aa gene gene1926 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1942 YPO1943 YPO1943 YPO1943 2204944 2206356 + putative membrane protein Previously sequenced as Yersinia pestis hypothetical protein TR:Q9ZC53 (EMBL:AL031866) (469 aa) fasta scores: E(): 0%2C 100.0%25 id in 469 aa. Similar to Pasteurella multocida hypothetical protein Pm0451 TR:AAK02535 (EMBL:AE006080) (465 aa) fasta scores: E(): 0%2C 49.1%25 id in 468 aa gene gene1927 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1943 YPO1944 YPO1944 YPO1944 2206359 2207651 + putative membrane protein Previously sequenced as Yersinia pestis hypothetical protein TR:Q9ZC54 (EMBL:AL031866) (430 aa) fasta scores: E(): 0%2C 100.0%25 id in 430 aa. Similar to Campylobacter jejuni possible ABC transport system permease protein Cj1661 TR:Q9PM16 (EMBL:AL139079) (430 aa) fasta scores: E(): 0%2C 36.1%25 id in 435 aa gene gene1928 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1944 YPO1945 YPO1945 YPO1945 2207641 2208804 + putative membrane protein Previously sequenced as Yersinia pestis hypothetical protein TR:Q9ZC55 (EMBL:AL031866) (387 aa) fasta scores: E(): 0%2C 100.0%25 id in 387 aa. Similar to Campylobacter jejuni putative integral membrane protein Cj1662 TR:Q9PM15 (EMBL:AL139079) (372 aa) fasta scores: E(): 0%2C 32.5%25 id in 375 aa gene gene1929 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1945 YPO1946 YPO1946 YPO1946 2208808 2209521 + ABC transporter%2C ATP-binding protein Previously sequenced as Yersinia pestis hypothetical protein (EMBL:AL031866) (237 aa) fasta scores: E(): 0%2C100.0%25 id in 237 aa. Similar to Campylobacter jejuni putative ABC transport system ATP-binding protein Cj1663 TR:Q9PM14 (EMBL:AL139079) (217 aa) fasta scores: E(): 0%2C60.8%25 id in 209 aa gene gene1930 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1946 YPO1947 YPO1947 YPO1947 2209511 2210008 + putative thioredoxin Previously sequenced as Yersinia pestis hypothetical protein TR:Q9ZC57 (EMBL:AL031866) (165 aa) fasta scores: E(): 0%2C 100.0%25 id in 165 aa. Similar to Bacillus subtilis ResA protein SW:RESA_BACSU (P35160) (181 aa) fasta scores: E(): 1.5e-09%2C 28.8%25 id in 132 aa gene gene1931 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1947 YPO1948 YPO1948 YPO1948 2210008 2210319 + putative cytochrome Previously sequenced as Yersinia pestis hypothetical protein TR:Q9ZC58 (EMBL:AL031866) (104 aa) fasta scores: E(): 0%2C 100.0%25 id in 103 aa. Similar to Desulfovibrio vulgaris cytochrome c-553 precursor Cyf SW:C553_DESVH (P04032) (103 aa) fasta scores: E(): 0.0048%2C 29.8%25 id in 104 aa gene gene1932 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1948 YPO1949 YPO1949 tehB tehB 2210492 2211379 + putative tellurite resistance protein Previously sequenced as Yersinia pestis probable tellurite resistance protein TehB TR:Q9ZC59 (EMBL:AL031866) (295 aa) fasta scores: E(): 0%2C 100.0%25 id in 295 aa. Similar to Streptococcus pneumoniae tellurite resistance protein TehB TR:Q9X3Q7 (EMBL:AF079807) (286 aa) fasta scores: E(): 0%2C 56.2%25 id in 283 aa gene gene1933 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1949 YPO1950 YPO1950 YPO1950 2211520 2212737 + putative peptidase Previously sequenced as Yersinia pestis hypothetical protein TR:Q9ZC60 (EMBL:AL031866) (405 aa) fasta scores: E(): 0%2C 99.8%25 id in 405 aa. Similar to Lactococcus lactis aminopeptidase P PepP TR:O08316 (EMBL:Y08842) (352 aa) fasta scores: E(): 4.3e-14%2C 25.9%25 id in 390 aa. Similar to YPO3004 (71.6%25 identity in 331 aa overlap) gene gene1934 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1950 YPO1951 YPO1951 hmsH hmsH 2213406 2215874 + haemin storage system%2C HmsH protein Previously sequenced as Yersinia pestis hemin binding protein HmsH TR:Q56939 (EMBL:U22837) (822 aa) fasta scores: E(): 0%2C 100.0%25 id in 822 aa. Similar to Escherichia coli O157:H7 putative outer membrane protein YcdS TR:AAG55642 (EMBL:AE005302) (807 aa) fasta scores: E(): 0%2C40.3%25 id in 824 aa gene gene1935 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1951 YPO1952 YPO1952 hmsF hmsF 2215887 2217908 + haemin storage system%2C HmsF protein Previously sequenced as Yersinia pestis hemin binding protein HmsF TR:Q56940 (EMBL:U22837) (673 aa) fasta scores: E(): 0%2C 99.7%25 id in 673 aa. Similar to Escherichia coli hypothetical lipoprotein YcdR SW:YCDR_ECOLI (P75906) (672 aa) fasta scores: E(): 0%2C 48.6%25 id in 662 aa gene gene1936 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1952 YPO1953 YPO1953 hmsR hmsR 2217898 2219232 + haemin storage system%2C HmsR protein Previously sequenced as Yersinia pestis hemin binding protein HmsR TR:Q56941 (EMBL:U22837) (457 aa) fasta scores: E(): 0%2C 99.8%25 id in 444 aa. Similar to Escherichia coli hypothetical protein YcdQ SW:YCDQ_ECOLI (P75905) (441 aa) fasta scores: E(): 0%2C 66.0%25 id in 441 aa. There is a discrepancy in the start codon gene gene1937 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1953 YPO1954 YPO1954 hmsS hmsS 2219229 2219696 + haemin storage system%2C HmsS protein Previously sequenced as Yersinia pestis hypothetical and essential protein HmsS TR:P74989 (EMBL:U22837) (155 aa) fasta scores: E(): 0%2C 100.0%25 id in 155 aa gene gene1938 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1954 YPO1955 YPO1955 YPO1955 2220029 2220928 + putative acetyltransferase Previously sequenced as Yersinia pestis hypothetical protein TR:Q9ZC61 (EMBL:AL031866) (299 aa) fasta scores: E(): 0%2C 100.0%25 id in 299 aa. Similar to Saccharomyces cerevisiae hypothetical protein Yir042C SW:YIW2_YEAST (P40586) (236 aa) fasta scores: E(): 0%2C 42.6%25 id in 230 aa gene gene1939 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1955 YPO1956 YPO1956 YPO1956 2221367 2221645 + hypothetical protein Weakly similar to the internal region of Thermoplasma acidophilum NADH dehydrogenase%2C subunit I related protein TR:CAC12095 (EMBL:AL445066) (340 aa) fasta scores: E(): 1.4%2C 27.8%25 id in 90 aa%2C and to the internal region of Zymomonas mobilis phospho-N-acetylmuramoyl-pentapeptide-transferase MraY SW:MRAY_ZYMMO (P56834) (356 aa) fasta scores: E(): 1.8%2C31.0%25 id in 87 aa gene gene1940 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1956 YPO1957 YPO1957 phoH phoH 2221705 2222493 + putative phosphate starvation-inducible protein Previously sequenced as Yersinia pestis hypothetical protein TR:Q9ZC62 (EMBL:AL031866) (262 aa) fasta scores: E(): 0%2C 100.0%25 id in 262 aa. The Y. pestis ORF lacks 93 amino acid at the N-terminal end. Similar to Escherichia coli phosphate starvation-inducible protein PhoH SW:PHOH_ECOLI (P31544) (354 aa) fasta scores: E(): 0%2C 91.2%25 id in 262 aa gene gene1941 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1957 YPO1958 YPO1958 chaA chaA 2222596 2223696 - calcium/proton antiporter Previously sequenced as Yersinia pestis probable calcium/proton antiporter protein ChaA TR:Q9ZC63 (EMBL:AL031866) (366 aa) fasta scores: E(): 0%2C 100.0%25 id in 366 aa. Similar to Escherichia coli calcium/proton antiporter ChaA SW:CHAA_ECOLI (P31801) (366 aa) fasta scores: E(): 0%2C 78.4%25 id in 356 aa gene gene1942 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1958 YPO1959 YPO1959 narR narR 2224245 2226026 - nitrate/nitrite sensor protein Previously sequenced as Yersinia pestis probable nitrate/nitrite sensor protein TR:Q9ZC64 (EMBL:AL031866) (593 aa) fasta scores: E(): 0%2C 100.0%25 id in 593 aa. Similar to Escherichia coli nitrate/nitrite sensor protein NarX SW:NARX_ECOLI (P10956) (598 aa) fasta scores: E(): 0%2C 47.9%25 id in 595 aa gene gene1943 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1959 YPO1960 YPO1960 YPO1960 2226336 2227757 + putative GntR-family regulatory protein Previously sequenced as Yersinia pestis hypothetical protein TR:Q9ZC65 (EMBL:AL031866) (473 aa) fasta scores: E(): 0%2C 100.0%25 id in 473 aa. Similar to Escherichia coli hypothetical multi modular protein TR:P77730 (EMBL:AE000241) (468 aa) fasta scores: E(): 0%2C 56.8%25 id in 465 aa gene gene1944 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1960 YPO1961 YPO1961 YPO1961 2227999 2228196 + putative membrane protein Doubtful CDS (very low %25GC content). No significant database matches gene gene1945 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1961 YPO1962 YPO1962 argM argM 2228394 2229638 + succinylornithine aminotransferase Previously sequenced as Yersinia pestis probable succinylornithine aminotransferase AruC protein TR:Q9ZC66 (EMBL:AL031866) (414 aa) fasta scores: E(): 0%2C 100.0%25 id in 414 aa. Similar to Escherichia coli succinylornithine transaminase ArgM SW:ARGM_ECOLI (P77581) (406 aa) fasta scores: E(): 0%2C 68.9%25 id in 409 aa gene gene1946 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1962 YPO1963 YPO1963 astA astA 2229668 2230720 + arginine N-succinyltransferase Previously sequenced as Yersinia pestis probable arginine/ornithine succinyltransferase AI subunit protein AruF TR:Q9ZC67 (EMBL:AL031866) (350 aa) fasta scores: E(): 0%2C 100.0%25 id in 350 aa. Similar to Escherichia coli arginine N-succinyltransferase AstA SW:ASTA_ECOLI (P76218) (344 aa) fasta scores: E(): 0%2C 63.1%25 id in 347 aa gene gene1947 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1963 YPO1964 YPO1964 astD astD 2230717 2232234 + succinylglutamic semialdehyde dehydrogenase Previously sequenced as Yersinia pestis probable succinylglutamate 5-semialdehyde dehydrogenase AruD TR:Q9ZC68 (EMBL:AL031866) (505 aa) fasta scores: E(): 0%2C100.0%25 id in 505 aa. Similar to Escherichia coli succinylglutamic semialdehyde dehydrogenase AstD SW:ASTD_ECOLI (P76217) (492 aa) fasta scores: E(): 0%2C 65.1%25 id in 484 aa gene gene1948 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1964 YPO1965 YPO1965 astB astB 2232258 2233601 + succinylarginine dihydrolase Previously sequenced Yersinia pestis probable succinyarginine dihydrolase AruB TR:Q9ZC69 (EMBL:AL031866) (447 aa) fasta scores: E(): 0%2C 100.0%25 id in 447 aa. Similar to Escherichia coli succinylarginine dihydrolase AstB SW:ASTB_ECOLI (P76216) (447 aa) fasta scores: E(): 0%2C 65.8%25 id in 447 aa gene gene1949 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1965 YPO1966 YPO1966 astE astE 2233662 2234654 + succinylglutamate desuccinylase Previously sequenced Yersinia pestis probable succinylglutamate desuccinylase AruE TR:Q9ZC70 (EMBL:AL031866) (330 aa) fasta scores: E(): 0%2C 100.0%25 id in 330 aa. Similar to Escherichia coli succinylglutamate desuccinylase AstE SW:ASTE_ECOLI (P76215) (322 aa) fasta scores: E(): 0%2C 49.1%25 id in 322 aa gene gene1950 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1966 YPO1967 YPO1967 nmpC nmpC 2238223 2238426 + porin (pseudogene) Previously sequenced Yersinia pestis hypothetical protein TR:Q9ZC71 (EMBL:AL031866) (315 aa) fasta scores: E(): 0%2C 100.0%25 id in 315 aa. This CDS is disrupted by the insertion of an IS100 element. The full length CDS is similar to Escherichia coli outer membrane porin protein NmpC protein NmpC SW:NMPC_ECOLI (P21420) (365 aa) fasta scores: E(): 0%2C 56.2%25 id in 370 aa pseudogene gene1951 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1967 YPO1968 YPO1968 y1093 y1093 2236351 2237397 + transposase for insertion sequence IS100 Similar to Escherichia coli transposase for insertion sequence element IS21 IstA SW:ISTA_ECOLI (P15025) (390 aa) fasta scores: E(): 3e-27%2C 33.1%25 id in 329 aa. Identical to the previously sequenced Yersinia pestis%2CYersinia pseudotuberculosis%2C and Escherichia coli pesticin plasmid insertion sequence transposase Y1055 TR:P74993 (EMBL:U59875) (340 aa) fasta scores: E(): 0%2C 100.0%25 id in 340 aa gene gene1952 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1968 YPO1969 YPO1969 y0016 y0016 2237397 2238149 + putative IS100 transposase Similar to Yersinia pestis%2C and Escherichia coli putative IS100 transposase Ypmt1.57c or Y0016 or Y1054 or Yppcp1.02 or Ypmt1.02 TR:Q9R3L5 (EMBL:AL117211) (260 aa) fasta scores: E(): 0%2C 100.0%25 id in 250 aa. This CDS is missing the first two methionines. Possible frameshift%3B~was marked partial gene gene1953 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1969 YPO1971 YPO1971 hutG hutG 2238726 2239532 - putative N-formylglutamate amidohydrolase Previously sequenced Yersinia pestis hypothetical protein HutG TR:Q9ZC73 (EMBL:AL031866) (268 aa) fasta scores: E(): 0%2C 100.0%25 id in 268 aa. Similar to Pseudomonas putida N-formylglutamate amidohydrolase HutG TR:O31201 (EMBL:AF032970) (267 aa) fasta scores: E(): 0%2C 59.6%25 id in 260 aa gene gene1954 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1971 YPO1972 YPO1972 hutI hutI 2239529 2240749 - imidazolonepropionase Previously sequenced as Yersinia pestis hypothetical protein HutI SW:HUTI_YERPE (Q9ZC74) (406 aa) fasta scores: E(): 0%2C 100.0%25 id in 406 aa. Similar to Pseudomonas putida imidazolonepropionase HutI SW:HUTI_PSEPU (O31200) (400 aa) fasta scores: E(): 0%2C 54.2%25 id in 408 aa gene gene1955 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1972 YPO1973 YPO1973 hutC hutC 2240953 2241720 - putative GntR-family transcriptional regulatory protein Previously sequenced as Yersinia pestis hypothetical protein HutC TR:Q9ZC75 (EMBL:AL031866) (255 aa) fasta scores: E(): 0%2C 99.6%25 id in 255 aa. Similar to Pseudomonas putida histidine utilization repressor HutC SW:HUTC_PSEPU (P22773) (248 aa) fasta scores: E(): 0%2C 63.2%25 id in 242 aa gene gene1956 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1973 YPO1974 YPO1974 YPO1974 2241868 2243238 + putative chlorohydrolase Previously sequenced Yersinia pestis hypothetical protein TR:Q9ZC76 (EMBL:AL031866) (456 aa) fasta scores: E(): 0%2C 100.0%25 id in 456 aa. Similar to Myxococcus xanthus SdeB protein%2C which is essential for development and sporulation%2C TR:O68982 (EMBL:AF060075) (462 aa) fasta scores: E(): 0%2C 36.6%25 id in 421 aa gene gene1957 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1974 YPO1975 YPO1975 YPO1975 2243238 2243810 + conserved hypothetical protein Previously sequenced as Yersinia pestis hypothetical protein TR:Q9ZC77 (EMBL:AL031866) (190 aa) fasta scores: E(): 0%2C 100.0%25 id in 190 aa and to Escherichia coli hypothetical protein YdjR SW:YDJR_ECOLI (P76214) (191 aa) fasta scores: E(): 2.9e-18%2C 39.2%25 id in 171 aa gene gene1958 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1975 YPO1976 YPO1976 YPO1976 2243988 2245964 - hypothetical protein Previously sequenced as Yersinia pestis hypothetical protein TR:Q9ZC78 (EMBL:AL031866) (658 aa) fasta scores: E(): 0%2C 100.0%25 id in 658 aa. The C-terminal region of this CDS shows also some similarity to the C-terminal region of salicylate synthetase component I from Yersinia enterocolitica Irp9 [TR:Q9X9I8 (EMBL:AJ132668) (434 aa) fasta scores: E(): 5.8e-25%2C 35.5%25 id in 262 aa] and from a wide range of other microorganisms. Contains a 5x YT repeat codons 22..31 gene gene1959 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1976 YPO1977 YPO1977 YPO1977 2246601 2247609 + 3-oxoacyl-[acyl-carrier-protein] synthase III (pseudogene) Similar to Salmonella typhimurium 3-oxoacyl-[acyl-carrier-protein] synthase III SW:FABH_SALTY (O85139) (317 aa) fasta scores: E(): 2.4e-21%2C 29.0%25 id in 314 aa%2C and to Xanthomonas campestris GumO TR:O34266 (EMBL:U70053) (435 aa) fasta scores: E(): 0%2C 38.3%25 id in 329 aa%2C and identical over its N-terminal and C-terminal regions to the previously sequenced Yersinia pestis Q9ZC79 and Q9ZC80%2C respectively. There is a possible frameshift mutation following codon 158. The sequence has been checked and is believed to be correct pseudogene gene1960 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1977 YPO1979 YPO1979 YPO1979 2247623 2248639 + putative dehydrogenase Previously sequenced as Yersinia pestis possible oxidoreductase TR:Q9ZC81 (EMBL:AL031866) (338 aa) fasta scores: E(): 0%2C 100.0%25 id in 338 aa. Similar to Mus musculus NAD(P)-dependent steroid dehydrogenase SW:NSDL_MOUSE (Q9R1J0) (362 aa) fasta scores: E(): 3.2e-16%2C28.1%25 id in 335 aa. Similar to YPO1355 (45.7%25 identity in 326 aa overlap) gene gene1961 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1979 YPO1980 YPO1980 YPO1980 2248632 2249438 + conserved hypothetical protein Previously sequenced as Yersinia pestis hypothetical protein TR:Q9ZC82 (EMBL:AL031866) (268 aa) fasta scores: E(): 0%2C 100.0%25 id in 268 aa. Similar to Xanthomonas campestris hypothetical protein GumP TR:O34267 (EMBL:U70053) (282 aa) fasta scores: E(): 1.4e-22%2C 33.7%25 id in 252 aa gene gene1962 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1980 YPO1981 YPO1981 YPO1981 2249435 2250721 + putative coenzyme synthetase Similar to Methanobacterium thermoautotrophicum coenzyme F390 synthetase III Mth161 TR:O26263 (EMBL:AE000804) (434 aa) fasta scores: E(): 0.00035%2C 21.2%25 id in 448 aa%2C and to Vibrio cholerae CapK protein%2C putative Vc0924 TR:Q9KTH8 (EMBL:AE004175) (446 aa) fasta scores: E(): 1.9e-08%2C 24.4%25 id in 336 aa gene gene1963 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1981 YPO1982 YPO1982 YPO1982 2250855 2251817 + putative dehydrogenase Similar to Pseudomonas aeruginosa WbpK TR:P72144 (EMBL:U50396) (320 aa) fasta scores: E(): 2.8e-07%2C 29.8%25 id in 258 aa%2C and to Pseudomonas aeruginosa WbjfT TR:Q9KIC7 (EMBL:AF236052) (301 aa) fasta scores: E(): 7.7e-07%2C 27.0%25 id in 270 aa%2C and to Yersinia enterocolitica putative 6-deoxy-gulose synthetase-2 WbcB TR:Q56863 (EMBL:U46859) (292 aa) fasta scores: E(): 4e-06%2C 27.0%25 id in 256 aa. Proteins WbpK and WbjfT from P.aeruginosa and WbcB from Y. enterocolitica are all involved in O antigen biosynthesis gene gene1964 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1982 YPO1983 YPO1983 YPO1983 2251817 2252971 + putative glycosyl transferase Similar to Mus musculus ceramide glucosyltransferase UgcG TR:O88693 (EMBL:D89866) (394 aa) fasta scores: E(): 2.3e-10%2C 24.2%25 id in 389 aa%2C and to Rattus norvegicus ceramide glucosyltransferase TR:Q9R0E0 (EMBL:AF047707) (394 aa) fasta scores: E(): 5.8e-10%2C 23.9%25 id in 389 aa. These enzymes are involved in lipid glycosylation gene gene1965 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1983 YPO1984 YPO1984 YPO1984 2252968 2253552 + hypothetical protein Doubtful CDS. No significant database hits gene gene1966 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1984 YPO1985 YPO1985 YPO1985 2253549 2254736 + putative glycosyl transferase Similar to Streptomyces fradiae deoxyallosyl-transferase TylN TR:O70023 (EMBL:AJ005397) (422 aa) fasta scores: E(): 1e-08%2C 24.1%25 id in 370 aa%2C and to Saccharothrix aerocolonigenes Ngt protein TR:Q9S595 (EMBL:AB023953) (414 aa) fasta scores: E(): 1e-08%2C 24.0%25 id in 375 aa gene gene1967 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1985 YPO1986 YPO1986 YPO1986 2254897 2255361 - putative exported protein Similar to the internal region of Bacillus halodurans spore coat polysaccharide synthesis SpsK TR:Q9K7J6 (EMBL:AP001518) (283 aa) fasta scores: E(): 9.2%2C24.2%25 id in 124 aa gene gene1968 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1986 YPO1987 YPO1987 YPO1987 2255531 2257189 - hypothetical protein No significant database hits gene gene1969 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1987 YPO1988 YPO1988 y1062 y1062 2257308 2258516 + transposase for the IS285 insertion element Previously sequenced Yersinia pestis transposase Y1062 or Ypmt1.80C TR:O68779 (EMBL:AF053947) (402 aa) fasta scores: E(): 0%2C 100.0%25 id in 402 aa. gene gene1970 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1988 YPO1989 YPO1989 YPO1989 2258636 2260798 - putative exported protein Similar at its C-terminal region to the following: Escherichia coli hypothetical 37.3 kDa protein in leuS-gltL intergenic region YbeQ SW:YBEQ_ECOLI (P77234) (327 aa) fasta scores: E(): 9.3e-12%2C 32.1%25 id in 196 aa%2C Neisseria meningitidis hypothetical protein Nmb0419 TR:Q9K0Y5 (EMBL:AE002398) (198 aa) fasta scores: E(): 1.3e-09%2C 28.5%25 id in 179 aa%2C and to Coxiella burnetii immunoreactive protein TR:Q9RN76 (EMBL:AF185288) (469 aa) fasta scores: E(): 4.1e-10%2C 24.6%25 id in 357 aa gene gene1971 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1989 YPO1990 YPO1990 YPO1990 2261376 2263487 + putative membrane protein Its internal region shows some similarity to Neisseria meningitidis hypothetical protein Nma1541 TR:Q9JU20 (EMBL:AL162756) (477 aa) fasta scores: E(): 0.21%2C25.7%25 id in 241 aa%2C and to Mycobacterium tuberculosis hypothetical 60.2 kDa protein Rv1135C or Mtci65.02C TR:O06535 (EMBL:Z95584) (618 aa) fasta scores: E(): 2%2C27.2%25 id in 184 aa gene gene1972 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1990 YPO1991 YPO1991 YPO1991 2263734 2264372 + putative sugar-phosphate isomerase Similar to Escherichia coli ribose 5-phosphate isomerase B RpiB SW:RPIB_ECOLI (P37351) (149 aa) fasta scores: E(): 1.6%2C 28.3%25 id in 145 aa%2C and to Thermotoga maritima sugar-phosphate isomerase Tm1080 TR:Q9X0G9 (EMBL:AE001768) (143 aa) fasta scores: E(): 0.15%2C 32.0%25 id in 125 aa gene gene1973 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1991 YPO1992 YPO1992 YPO1992 2264507 2265166 - conserved hypothetical protein Similar to Escherichia coli hypothetical protein precursor YbcY SW:YBCY_ECOLI (P77460) (143 aa) fasta scores: E(): 2.9e-30%2C 55.2%25 id in 143 aa%2C and to Streptomyces maritimus putative O-methyl transferase EncK TR:Q9KHK8 (EMBL:AF254925) (241 aa) fasta scores: E(): 9.2e-23%2C 33.3%25 id in 210 aa gene gene1974 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1992 YPO1993 YPO1993 YPO1993 2265271 2265951 - putative dehydrogenase Similar to Streptomyces clavuligerus clavaldehyde dehydrogenase Cad TR:Q9LCV7 (EMBL:U87786) (247 aa) fasta scores: E(): 1.6e-14%2C 30.5%25 id in 203 aa%2C and to Deinococcus radiodurans oxidoreductase%2C short-chain dehydrogenase/reductase family Dr1938 TR:Q9RT30 (EMBL:AE002032) (283 aa) fasta scores: E(): 2.9e-16%2C 36.7%25 id in 215 aa gene gene1975 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1993 YPO1994 YPO1994 YPO1994 2266292 2267242 - hypothetical protein Weakly similar to the internal region of Saccharomyces cerevisiae nonsense-mediated mRNA decay protein 2 Nmd2 or Upf2 or ifs1 or Sua1 or Yhr077C SW:NMD2_YEAST (P38798) (1089 aa) fasta scores: E(): 0.15%2C26.0%25 id in 289 aa. It also shows similarity to the N-terminus of Mus musculus calreticulin precursor CalR SW:CRTC_MOUSE (P14211) (416 aa) fasta scores: E(): 0.3%2C23.7%25 id in 215 aa gene gene1976 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1994 YPO1995 YPO1995 YPO1995 2267229 2268161 - hypothetical protein Weakly similar to Escherichia coli O157:H7 Z0020 protein Z0020 TR:AAG54319 (EMBL:AE005178) (207 aa) fasta scores: E(): 6.6%2C 26.3%25 id in 156 aa. The similarity is limited to the central and C-terminal regions of this CDS gene gene1977 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1995 YPO1996 YPO1996 YPO1996 2268167 2269072 - hypothetical protein No significant database hits gene gene1978 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1996 YPO1997 YPO1997 YPO1997 2269863 2270936 - putative exported protein No significant database matches gene gene1979 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1997 YPO1998 YPO1998 YPO1998 2271149 2271619 - putative exported protein Similar to Escherichia coli Pep1 TnpA TR:P75026 (EMBL:U60777) (140 aa) fasta scores: E(): 0.13%2C 31.4%25 id in 137 aa%2C and to Thermotoga maritima hypothetical 15.1 kDa protein Tm1010 TR:Q9X0A3 (EMBL:AE001762) (135 aa) fasta scores: E(): 1.2e-12%2C 42.0%25 id in 119 aa gene gene1980 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1998 YPO1999 YPO1999 YPO1999 2271674 2272096 - putative decarboxylase Similar to Acinetobacter calcoaceticus 4-carboxymuconolactone decarboxylase PcaC SW:DC4C_ACICA (P20370) (134 aa) fasta scores: E(): 1.4e-09%2C 35.9%25 id in 103 aa%2C and to Methanobacterium thermoautotrophicum gamma-carboxymuconolactone decarboxylase Mth234 TR:O26336 (EMBL:AE000810) (125 aa) fasta scores: E(): 4.7e-11%2C 35.5%25 id in 107 aa gene gene1981 http://www.ncbi.nlm.nih.gov/gene/?term=YPO1999 YPO2000 YPO2000 YPO2000 2272373 2273764 - putative two-component system sensor protein Similar to Burkholderia pseudomallei sensor protein IrlS SW:IRLS_BURPS (O31396) (464 aa) fasta scores: E(): 0%2C29.1%25 id in 454 aa%2C and to Pseudomonas aeruginosa probable two-component sensor PA1438 TR:AAG04827 (EMBL:AE004573) (481 aa) fasta scores: E(): 0%2C 42.2%25 id in 453 aa gene gene1982 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2000 YPO2001 YPO2001 copR copR 2273770 2274462 - transcriptional activator Similar to Pseudomonas syringae transcriptional activator protein CopR SW:COPR_PSESM (Q02540) (227 aa) fasta scores: E(): 0%2C 60.8%25 id in 227 aa%2C and to Burkholderia pseudomallei transcriptional activator protein IrlR SW:IRLR_BURPS (O31395) (229 aa) fasta scores: E(): 0%2C57.6%25 id in 224 aa gene gene1983 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2001 YPO2002 YPO2002 YPO2002 2274727 2275818 + conserved hypothetical protein Similar to Escherichia coli hypothetical protein YcjY SW:YCJY_ECOLI (P76049) (310 aa) fasta scores: E(): 0%2C36.6%25 id in 295 aa%2C and to Pseudomonas aeruginosa hypothetical protein Pa2218 pa2218 TR:AAG05606 (EMBL:Z14064) (367 aa) fasta scores: E(): 2e-29%2C 33.8%25 id in 349 aa. Contains a 2x repeat unit: TSVFK gene gene1984 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2002 YPO2003 YPO2003 YPO2003 2275967 2276674 + putative exported protein No significant database matches gene gene1985 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2003 YPO2004 YPO2004 YPO2004 2276689 2277384 + putative membrane protein No significant database matches gene gene1986 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2004 YPO2005 YPO2005 YPO2005 2277593 2278435 - putative exported protein No significant database matches gene gene1987 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2005 YPO2006 YPO2006 YPO2006 2279186 2279722 + hypothetical protein No significant database hits gene gene1988 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2006 YPO2007 YPO2007 YPO2007 2279719 2280549 + putative esterase Weak similarity with the C-terminal regions of Pseudomonas sp lipase LipP TR:O52270 (EMBL:AF034088) (308 aa) fasta scores: E(): 7.2e-05%2C 27.3%25 id in 242 aa%2C and Acinetobacter calcoaceticus carboxylesterase EstA TR:Q60123 (EMBL:X74839) (356 aa) fasta scores: E(): 0.0078%2C 22.3%25 id in 251 aa gene gene1989 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2007 YPO2008 YPO2008 YPO2008 2280557 2280955 + putative rhodanese-like protein Similar to an internal region of Bacillus halodurans hypothetical protein BH2092 TR:Q9KB42 (EMBL:AP001514) (162 aa) fasta scores: E(): 1.4e-17%2C 44.5%25 id in 119 aa%2C and to the C-terminal region of Vibrio cholerae hypothetical protein VCA1053 TR:Q9KKP9 (EMBL:AE004431) (166 aa) fasta scores: E(): 9.7e-12%2C 31.0%25 id in 116 aa gene gene1990 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2008 YPO2009 YPO2009 YPO2009 2281003 2281512 - putative integrase core domain protein Similar to the C-terminal region of Pseudomonas aeruginosa hypothetical protein PA0257 TR:AAG03646 (EMBL:AE004463) (263 aa) fasta scores: E(): 0%2C 65.2%25 id in 141 aa%2C and to and internal region of Porphyromonas gingivalis transposase Orf2 TR:Q9L796 (EMBL:AF224744) (312 aa) fasta scores: E(): 3.1e-14%2C 41.7%25 id in 144 aa gene gene1991 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2009 YPO2009a YPO2009a YPO2009a 2281530 2281844 - conserved hypothetical protein C-terminus is similar to Pseudomonas aeruginosa hypothetical protein PA0258 TR:Q9I6N1 (EMBL:AE004463) (61 aa) fasta scores: E(): 1.7e-05%2C 52.542%25 id in 59 aa. Full length CDS is weakly similar to Lactococcus lactis hypothetical protein YafG TR:Q9CJE4 (EMBL:AE006243) (123 aa) fasta scores: E(): 5.1%2C 23.711%25 id in 97 aa. Possible alternative translational start sites gene gene1992 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2009a YPO2010 YPO2010 ychF ychF 2282141 2283232 - conserved hypothetical protein Similar to Escherichia coli probable GTP-binding protein YchF SW:YCHF_ECOLI (P31216) (362 aa) fasta scores: E(): 0%2C 92.5%25 id in 362 aa%2C and to Haemophilus influenzae probable GTP-binding protein HI0393 SW:YCHF_HAEIN (P44681) (362 aa) fasta scores: E(): 0%2C 79.6%25 id in 362 aa gene gene1993 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2010 YPO2011 YPO2011 pth pth 2283396 2283986 - peptidyl-tRNA hydrolase Similar to Escherichia coli peptidyl-tRNA hydrolase Pth SW:PTH_ECOLI (P23932) (194 aa) fasta scores: E(): 0%2C78.6%25 id in 192 aa%2C and to Salmonella typhi peptidyl-tRNA hydrolase Pth SW:PTH_SALTI (Q60001) (194 aa) fasta scores: E(): 0%2C 76.6%25 id in 192 aa gene gene1994 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2011 YPO2012 YPO2012 YPO2012 2284348 2284620 + putative membrane protein Similar to Escherichia coli hypothetical protein YchH SW:YCHH_ECOLI (P31807) (92 aa) fasta scores: E(): 6.4e-26%2C 68.5%25 id in 92 aa gene gene1995 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2012 YPO2013 YPO2013 prs prs 2284822 2285769 - ribose-phosphate pyrophosphokinase Similar to Salmonella typhimurium ribose-phosphate pyrophosphokinase PrsA SW:KPRS_SALTY (P15849) (314 aa) fasta scores: E(): 0%2C 97.1%25 id in 314 aa%2C and to Escherichia coli ribose-phosphate pyrophosphokinase PrsA SW:KPRS_ECOLI (P08330) (314 aa) fasta scores: E(): 0%2C 97.1%25 id in 314 aa gene gene1996 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2013 YPO2014 YPO2014 ipk ipk 2286110 2287009 - putative 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase Similar to Escherichia coli 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase IspE TR:AAF29530 (EMBL:AJ249325) (283 aa) fasta scores: E(): 0%2C76.2%25 id in 277 aa%2C and to Vibrio cholerae 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase IspE TR:Q9KQ23 (EMBL:AE004289) (295 aa) fasta scores: E(): 0%2C60.9%25 id in 281 aa gene gene1997 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2014 YPO2015 YPO2015 YPO2015 2287011 2287634 - putative lipoprotein Similar to Escherichia coli outer-membrane lipoprotein LolB SW:LOLB_ECOLI (P24208) (207 aa) fasta scores: E(): 0%2C 63.8%25 id in 207 aa%2C and to Salmonella typhimurium outer-membrane lipoprotein LolB SW:LOLB_SALTY (P30752) (207 aa) fasta scores: E(): 0%2C 62.8%25 id in 207 aa gene gene1998 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2015 YPO2016 YPO2016 hemA hemA 2287940 2289202 + glutamyl-tRNA reductase Similar to Escherichia coli glutamyl-tRNA reductase HemA SW:HEM1_ECOLI (P13580) (418 aa) fasta scores: E(): 0%2C79.7%25 id in 418 aa%2C and to Salmonella typhimurium glutamyl-tRNA reductase HemA SW:HEM1_SALTY (P13581) (418 aa) fasta scores: E(): 0%2C 79.7%25 id in 418 aa gene gene1999 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2016 YPO2017 YPO2017 prfA prfA 2289235 2290317 + peptide chain release factor 1 Similar to Escherichia coli peptide chain release factor 1 PrfA SW:RF1_ECOLI (P07011) (360 aa) fasta scores: E(): 0%2C 85.6%25 id in 360 aa%2C and to Salmonella typhimurium peptide chain release factor 1 PrfA SW:RF1_SALTY (P13654) (360 aa) fasta scores: E(): 0%2C 85.8%25 id in 360 aa gene gene2000 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2017 YPO2018 YPO2018 YPO2018 2290317 2291147 + putative protoporphyrinogen oxidase Similar to Escherichia coli possible protoporphyrinogen oxidase HemK SW:HEMK_ECOLI (P37186) (277 aa) fasta scores: E(): 0%2C 62.5%25 id in 275 aa%2C and to Vibrio cholerae possible protoporphyrinogen oxidase HemK TR:Q9KQ26 (EMBL:AE004289) (286 aa) fasta scores: E(): 0%2C 54.2%25 id in 260 aa gene gene2001 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2018 YPO2019 YPO2019 YPO2019 2291211 2291612 + putative membrane protein Similar to Salmonella typhimurium hypothetical protein TR:Q9XCQ2 (EMBL:AF134855) (129 aa) fasta scores: E(): 4.6e-23%2C 56.3%25 id in 126 aa%2C and to Escherichia coli hypothetical protein TR:Q46755 (EMBL:U18555) (130 aa) fasta scores: E(): 3.6e-19%2C 50.8%25 id in 120 aa. The S. typhimurium protein has been shown to contribute to Salmonella pathogenicity island 1 (SPI1) gene transcription gene gene2002 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2019 YPO2020 YPO2020 YPO2020 2291609 2292418 + conserved hypothetical protein Similar to Salmonella typhimurium hypothetical protein YchA TR:Q9XCQ1 (EMBL:AF134855) (269 aa) fasta scores: E(): 0%2C 63.6%25 id in 269 aa%2C and to Escherichia coli hypothetical protein YchA SW:YCHA_ECOLI (P20101) (269 aa) fasta scores: E(): 0%2C 61.7%25 id in 269 aa. The S. typhimurium protein has been shown to contribute to Salmonella pathogenicity island 1 (SPI1) gene transcription gene gene2003 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2020 YPO2021 YPO2021 kdsA kdsA 2292514 2293368 + 2-dehydro-3-deoxyphosphooctonate aldolase Similar to Escherichia coli 2-dehydro-3-deoxyphosphooctonate aldolase KdsA SW:KDSA_ECOLI (P17579) (284 aa) fasta scores: E(): 0%2C 90.1%25 id in 284 aa%2C and to Pasteurella haemolytica 2-dehydro-3-deoxyphosphooctonate aldolase KdsA SW:KDSA_PASHA (P95514) (284 aa) fasta scores: E(): 0%2C 80.3%25 id in 284 aa gene gene2004 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2021 YPO2023 YPO2023 tnp tnp 2293850 2294308 + transposase for the IS1541 insertion element Similar to Salmonella typhimurium%2C and Salmonella typhi transposase for insertion sequence IS200 TnpA SW:T200_SALTY (Q57334) (152 aa) fasta scores: E(): 0%2C 94.1%25 id in 152 aa. Identical to the Yersinia pseudotuberculosis IS1541-like element transposase Tnp TR:Q9X9F5 (EMBL:AJ238014) (152 aa) fasta scores: E(): 0%2C 100.0%25 id in 152 aa gene gene2005 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2023 YPO2025 YPO2025 ypmt1.57c ypmt1.57c 2294928 2295710 - insertion sequence IS100%2C ATP-binding protein Similar to Escherichia coli insertion sequence IS21 putative ATP-binding protein%2C IstB SW:ISTB_ECOLI (P15026) (265 aa) fasta scores: E(): 0%2C 47.4%25 id in 249 aa. Also almost identical to Yersinia pestis and Escherichia coli putative IS100 transposase ypmt1.57c TR:Q9R3L5 (EMBL:AL117211) (260 aa) fasta scores: E(): 0%2C 99.6%25 id in 260 aa. gene gene2007 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2025 YPO2026 YPO2026 y1093 y1093 2295707 2296729 - transposase for insertion sequence IS100 Similar to Escherichia coli transposase for insertion sequence element IS21 IstA SW:ISTA_ECOLI (P15025) (390 aa) fasta scores: E(): 3e-27%2C 33.1%25 id in 329 aa. Identical to the previously sequenced Yersinia pestis%2CYersinia pseudotuberculosis%2C and Escherichia coli pesticin plasmid insertion sequence transposase Y1055 TR:P74993 (EMBL:U59875) (340 aa) fasta scores: E(): 0%2C 100.0%25 id in 340 aa gene gene2008 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2026 YPO2027 YPO2027 YPO2027 2294432 2294857 - conserved hypothetical protein (pseudogene) Similar to Escherichia coli hypothetical protein YchM SW:YCHM_ECOLI (P40877) (550 aa) fasta scores: E(): 7.4e-159%2C 71.558%25 id in 552 aa%2C and to Pasteurella multocida hypothetical protein PM0948 TR:Q9CM88 (EMBL:AE006134) (569 aa) fasta scores: E(): 9.3e-127%2C57.651%25 id in 562 aa. CDS disrupted by the insertion sequence IS100 after codon 424. pseudogene gene2006 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2027 YPO2027a YPO2027a YPO2027a 2298327 2298623 - hypothetical protein Doubtful CDS. No significant database hits gene gene2009 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2027a YPO2028 YPO2028 YPO2028 2299155 2300030 - putative exported protein Similar to Mycobacterium tuberculosis hypothetical protein RV2277c SW:YM77_MYCTU (Q50687) (301 aa) fasta scores: E(): 0%2C 36.1%25 id in 277 aa. N-terminal region is similar to the N-terminus of Bacillus subtilis glycerophosphoryl diester phosphodiesterase GlpQ SW:GLPQ_BACSU (P37965) (293 aa) fasta scores: E(): 1e-10%2C34.5%25 id in 145 aa gene gene2010 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2028 YPO2029 YPO2029 YPO2029 2300331 2301413 - putative exported protein Weak similarity to Escherichia coli protein YnjB SW:YNJB_ECOLI (P76223) (388 aa) fasta scores: E(): 0.0059%2C25.5%25 id in 326 aa%2C and to Streptomyces coelicolor putative lipoprotein SCE46.13C TR:Q9RKH6 (EMBL:AL133252) (417 aa) fasta scores: E(): 0.0098%2C 22.2%25 id in 315 aa gene gene2011 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2029 YPO2030 YPO2030 YPO2030 2301433 2302269 - putative binding-protein-dependent transport system membrane protein Similar to Escherichia coli spermidine/putrescine transport system permease protein PotC SW:POTC_ECOLI (P23859) (264 aa) fasta scores: E(): 1.5e-11%2C 24.7%25 id in 219 aa%2C and to Bacillus licheniformis putative inner membrane protein Lam TR:Q45294 (EMBL:X94148) (270 aa) fasta scores: E(): 5.9e-19%2C 29.2%25 id in 267 aa gene gene2012 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2030 YPO2031 YPO2031 YPO2031 2302266 2303132 - putative binding-protein-dependent transport system membrane protein Similar to Escherichia coli spermidine/putrescine transport system permease protein PotB SW:POTB_ECOLI (P23860) (275 aa) fasta scores: E(): 1.2e-12%2C 21.4%25 id in 266 aa%2C and to Agrobacterium tumefaciens inner membrane protein MotC TR:Q44382 (EMBL:AF242881) (294 aa) fasta scores: E(): 3.7e-16%2C 28.7%25 id in 258 aa gene gene2013 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2031 YPO2033 YPO2033 tnp tnp 2304034 2304492 + transposase for the IS1541 insertion element Similar to Salmonella typhimurium and Salmonella typhi transposase for insertion sequence IS200%2C TnpA%2CSW:TNPA_SALTY (Q57334) (152 aa) fasta scores: E(): 0%2C 93.4%25 id in 152 aa. Almost identical to the Yersinia pseudotuberculosis IS1541-like element transposase Tnp TR:Q9X9F5 (EMBL:AJ238014) (152 aa) fasta scores: E(): 0%2C99.3%25 id in 152 aa gene gene2015 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2033 YPO2034 YPO2034 YPO2034 2303141 2303890 - putative ABC transporter ATP-binding protein (pseudogene) Similar to Vibrio cholerae iron (III) transpoter ATP-inding protein VCA0687 TR:Q9KLQ5 (EMBL:AE004398) (351 aa) fasta scores: E(): 0%2C 41.2%25 id in 352 aa%2C and to Vibrio cholerae ABC transporter%2C ATP-binding protein VCA0602 TR:Q9KLY9 (EMBL:AE004390) (403 aa) fasta scores: E(): 9.2e-47%2C 43.831%25 id in 308 aa. N-terminal of CDS is similar to N-terminal region of Yersinia pestis (369 aa) YPO3712 fasta scores: E(): 6.6e-14%2C 51.5%25 id in 101 aa overlap. CDS is disrupted by the insertion of an IS1541 element after codon 107 pseudogene gene2014 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2034 YPO2035 YPO2035 YPO2035 2305121 2305951 + hypothetical protein Weak similarity to Escherichia coli glycerophosphoryl diester phosphodiesterase UgpQ SW:UGPQ_ECOLI (P10908) (247 aa) fasta scores: E(): 5.8e-10%2C25.1%25 id in 207 aa%2C and to Agrobacterium radiobacter hypothetical protein AccF TR:O30545 (EMBL:AF010180) (305 aa) fasta scores: E(): 2.9e-18%2C 30.8%25 id in 250 aa gene gene2016 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2035 YPO2036 YPO2036 YPO2036 2305965 2307077 + putative transcriptional regulatory protein N-terminal region is similar to the N-terminus of Bacillus subtilis xylose repressor XylR SW:XYLR_BACSU (P16557) (384 aa) fasta scores: E(): 2.4e-15%2C 27.7%25 id in 256 aa. Full length CDS has weak similarity to Rhizobium sp hypothetical protein Y4FQ SW:Y4FQ_RHISN (P55455) (392 aa) fasta scores: E(): 1.4e-27%2C 30.1%25 id in 366 aa gene gene2017 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2036 YPO2037 YPO2037 YPO2037 2307712 2308449 + conserved hypothetical protein Similar to Escherichia coli hypothetical protein YcdX SW:YCDX_ECOLI (P75914) (245 aa) fasta scores: E(): 0%2C76.3%25 id in 245 aa%2C and to Vibrio cholerae hypothetical protein VCA0894 TR:Q9KL54 (EMBL:AE004417) (248 aa) fasta scores: E(): 0%2C 44.3%25 id in 244 aa gene gene2018 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2037 YPO2038 YPO2038 YPO2038 2308486 2309046 + conserved hypothetical protein Similar to Escherichia coli hypothetical protein YcdY SW:YCDY_ECOLI (P75915) (184 aa) fasta scores: E(): 0%2C65.9%25 id in 182 aa%2C and to Haemophilus influenzae hypothetical protein HI1543 SW:YCDY_HAEIN (P44248) (184 aa) fasta scores: E(): 7.3e-18%2C 42.0%25 id in 188 aa gene gene2019 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2038 YPO2039 YPO2039 YPO2039 2309500 2310063 - putative lipoprotein Similar to Escherichia coli hypothetical protein YceB SW:YCEB_ECOLI (P09995) (186 aa) fasta scores: E(): 0%2C64.7%25 id in 187 aa. C-terminus is similar to Salmonella typhimurium hypothetical protein YceB SW:YCEB_SALTY (P40822) (103 aa) fasta scores: E(): 2.4e-21%2C 66.0%25 id in 103 aa gene gene2020 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2039 YPO2040 YPO2040 YPO2040 2310458 2311663 - putative membrane protein Similar to Escherichia coli hypothetical protein YqjV TR:Q9R7P2 (EMBL:D90743) (412 aa) fasta scores: E(): 0%2C75.9%25 id in 398 aa%2C and to Escherichia coli hypothetical protein YceL SW:YCEL_ECOLI (P77042) (402 aa) fasta scores: E(): 0%2C 75.6%25 id in 398 aa gene gene2021 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2040 YPO2041 YPO2041 rimJ rimJ 2311957 2312541 + ribosomal-protein-alanine acetyltransferase Similar to Escherichia coli ribosomal-protein-alanine acetyltransferase RimJ SW:RIMJ_ECOLI (P09454) (194 aa) fasta scores: E(): 0%2C 75.8%25 id in 194 aa%2C and to Vibrio cholerae ribosomal-protein-alanine acetyltransferase VC1309 TR:Q9KSE8 (EMBL:AE004210) (191 aa) fasta scores: E(): 1.4e-30%2C 45.2%25 id in 177 aa gene gene2022 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2041 YPO2042 YPO2042 YPO2042 2312549 2314159 + putative oxidoreductase C-terminal region is similar to Salmonella typhimurium possible virulence factor MviM SW:MVIM_SALTY (P37168) (307 aa) fasta scores: E(): 0%2C 59.7%25 id in 298 aa%2Cand weakly similar to Bacillus subtilis myo-inositol 2-dehydrogenase Idh SW:MI2D_BACSU (P26935) (344 aa) fasta scores: E(): 9.8e-08%2C 23.5%25 id in 306 aa. N-terminal region is similar to Escherichia coli hypothetical protein YceH SW:YCEH_ECOLI (P29217) (215 aa) fasta scores: E(): 0%2C 60.9%25 id in 235 aa gene gene2023 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2042 YPO2043 YPO2043 mviN mviN 2314426 2315961 + putative membrane protein Similar to Salmonella typhimurium possible virulence factor protein MviN SW:MVIN_SALTY (P37169) (524 aa) fasta scores: E(): 0%2C 85.1%25 id in 510 aa%2C and to Pseudomonas aeruginosa hypothetical protein PA4562 TR:AAG07950 (EMBL:AE004870) (512 aa) fasta scores: E(): 0%2C 77.2%25 id in 509 aa gene gene2024 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2043 YPO2044 YPO2044 YPO2044 2316429 2318102 + putative hemolysin activator protein Similar to Serratia marcescens hemolysin activator protein precursor ShlB SW:HLYB_SERMA (P15321) (557 aa) fasta scores: E(): 0%2C 44.0%25 id in 555 aa%2C and to Proteus mirabilis hemolysin activator protein precursor HpmB SW:HLYB_PROMI (P16465) (561 aa) fasta scores: E(): 0%2C 41.5%25 id in 561 aa. CDS is similar to YPO3720 (590 aa) fasta scores: E(): 0%2C 41.9%25 id in 568 aa overlap. gene gene2025 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2044 YPO2045 YPO2045 YPO2045 2318132 2322862 + putative hemolysin Similar to Serratia marcescens hemolysin ShlA SW:HLYA_SERMA (P15320) (1608 aa) fasta scores: E(): 0%2C32.2%25 id in 1601 aa%2C and to Edwardsiella tarda hemolysin EthA TR:O32608 (EMBL:D89876) (1594 aa) fasta scores: E(): 0%2C 29.2%25 id in 1614 aa. CDS is similar to YPO3721 (1635 aa) fasta scores: E(): 0%2C 30.8%25 id in 1621 aa overlap. gene gene2026 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2045 YPO2046 YPO2046 argS argS 2323093 2324823 - arginyl-tRNA synthetase Similar to Escherichia coli arginyl-tRNA synthetase ArgS SW:SYR_ECOLI (P11875) (577 aa) fasta scores: E(): 0%2C82.8%25 id in 577 aa%2C and to Vibrio cholerae arginyl-tRNA synthetase VC2074 TR:Q9KQC6 (EMBL:AE004281) (599 aa) fasta scores: E(): 0%2C 71.4%25 id in 577 aa gene gene2027 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2046 YPO2047 YPO2047 YPO2047 2325446 2326021 + conserved hypothetical protein Similar to Escherichia coli hypothetical protein YecM SW:YECM_ECOLI (P52007) (188 aa) fasta scores: E(): 0%2C59.0%25 id in 183 aa%2C and to Haemophilus influenzae hypothetical protein HI1582 SW:YECM_HAEIN (P44262) (191 aa) fasta scores: E(): 5.3e-21%2C 35.3%25 id in 187 aa gene gene2028 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2047 YPO2048 YPO2048 cutC cutC 2326253 2327017 + putative copper homeostasis protein Similar to Escherichia coli copper homeostasis protein CutC SW:CUTC_ECOLI (P46719) (248 aa) fasta scores: E(): 0%2C 56.6%25 id in 244 aa%2C and to Homo sapiens hypothetical protein CGI-32 TR:Q9Y321 (EMBL:AF132966) (273 aa) fasta scores: E(): 0%2C 41.9%25 id in 241 aa gene gene2029 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2048 YPO2049 YPO2049 YPO2049 2327210 2328181 - conserved hypothetical protein Similar to Escherichia coli hypothetical protein YecP SW:YECP_ECOLI (P76291) (323 aa) fasta scores: E(): 0%2C77.1%25 id in 323 aa%2C and to Haemophilus influenzae hypothetical protein HI1351 SW:YECP_HAEIN (P44167) (321 aa) fasta scores: E(): 0%2C 63.4%25 id in 322 aa gene gene2030 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2049 YPO2050 YPO2050 YPO2050 2328178 2328981 - conserved hypothetical protein Similar to Escherichia coli hypothetical protein YecO SW:YECO_ECOLI (P76290) (247 aa) fasta scores: E(): 0%2C83.6%25 id in 244 aa%2C and to Vibrio cholerae hypothetical protein VC1164 TR:Q9KSU2 (EMBL:AE004196) (246 aa) fasta scores: E(): 0%2C 72.1%25 id in 244 aa. CDS appears to contain an extended N-terminal region compared to other homologues gene gene2031 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2050 YPO2051 YPO2051 YPO2051 2329172 2329567 - putative membrane protein Similar to Escherichia coli hypothetical protein YecN SW:YECN_ECOLI (P76289) (131 aa) fasta scores: E(): 0%2C70.0%25 id in 130 aa%2C and weak similarity to Homo sapiens microsomal glutathione s-transferase 2 MGST2 SW:GST2_HUMAN (Q99735) (147 aa) fasta scores: E(): 0.35%2C 29.2%25 id in 120 aa gene gene2032 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2051 YPO2052 YPO2052 YPO2052 2329747 2330562 - conserved hypothetical protein Similar to Escherichia coli hypothetical protein YecE SW:YECE_ECOLI (P37348) (272 aa) fasta scores: E(): 0%2C60.1%25 id in 271 aa%2C and to Vibrio cholerae hypothetical protein VC1165 vc1165 TR:Q9KSU1 (EMBL:AE004196) (289 aa) fasta scores: E(): 0%2C 50.7%25 id in 280 aa gene gene2033 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2052 YPO2053 YPO2053 aspS aspS 2331620 2333416 + aspartyl-tRNA synthetase Similar to Escherichia coli aspartyl-tRNA synthetase AspS SW:SYD_ECOLI (P21889) (590 aa) fasta scores: E(): 0%2C82.4%25 id in 586 aa%2C and to Vibrio cholerae aspartyl-tRNA synthetase VC1166 TR:Q9KSU0 (EMBL:AE004196) (591 aa) fasta scores: E(): 0%2C 76.6%25 id in 591 aa gene gene2034 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2053 YPO2054 YPO2054 ntpA ntpA 2333416 2333859 + putative dATP pyrophosphohydrolase Similar to Escherichia coli dATP pyrophosphohydrolase NudB SW:NUDB_ECOLI (P24236) (150 aa) fasta scores: E(): 0%2C 73.9%25 id in 142 aa%2C and to Haemophilus influenzae dATP pyrophosphohydrolase NudB SW:NUDB_HAEIN (P44635) (158 aa) fasta scores: E(): 2.6e-29%2C52.1%25 id in 144 aa gene gene2035 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2054 YPO2055 YPO2055 YPO2055 2333917 2334660 + conserved hypothetical protein Similar to Escherichia coli hypothetical protein YebC SW:YEBC_ECOLI (P24237) (246 aa) fasta scores: E(): 0%2C84.6%25 id in 247 aa%2C and to Haemophilus influenzae hypothetical protein HI0315 SW:YEBC_HAEIN (P44634) (246 aa) fasta scores: E(): 0%2C 73.3%25 id in 247 aa gene gene2036 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2055 YPO2056 YPO2056 ruvC ruvC 2334869 2335390 + crossover junction endodeoxyribonuclease Similar to Escherichia coli crossover junction endodeoxyribonuclease RuvC SW:RUVC_ECOLI (P24239) (172 aa) fasta scores: E(): 0%2C 83.7%25 id in 172 aa%2C and to Vibrio cholerae crossover junction endodeoxyribonuclease RuvC TR:Q9KR00 (EMBL:AE004260) (173 aa) fasta scores: E(): 0%2C71.7%25 id in 173 aa gene gene2037 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2056 YPO2057 YPO2057 ruvA ruvA 2335673 2336287 + Holliday junction DNA helicase Similar to Escherichia coli Holliday junction DNA helicase RuvA SW:RUVA_ECOLI (P08576) (203 aa) fasta scores: E(): 0%2C 79.0%25 id in 205 aa%2C and to Vibrio cholerae Holliday junction DNA helicase RuvA TR:Q9KR01 (EMBL:AE004260) (204 aa) fasta scores: E(): 0%2C 64.5%25 id in 203 aa gene gene2038 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2057 YPO2058 YPO2058 ruvB ruvB 2336449 2337453 + Holliday junction DNA helicase Similar to Escherichia coli Holliday junction DNA helicase RuvB SW:RUVB_ECOLI (P08577) (336 aa) fasta scores: E(): 0%2C 84.7%25 id in 334 aa%2C and to Haemophilus influenzae Holliday junction DNA helicase RuvB SW:RUVB_HAEIN (P44631) (335 aa) fasta scores: E(): 0%2C 80.1%25 id in 332 aa gene gene2039 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2058 YPO2059 YPO2059 znuB znuB 2337508 2338293 - high-affinity zinc uptake system membrane protein Similar to Escherichia coli high-affinity zinc uptake system membrane protein ZnuB SW:ZNUB_ECOLI (P39832) (261 aa) fasta scores: E(): 0%2C 82.6%25 id in 258 aa%2C and to Haemophilus influenzae high-affinity zinc uptake system membrane protein ZnuB SW:ZNUB_HAEIN (P44691) (261 aa) fasta scores: E(): 0%2C 60.0%25 id in 260 aa gene gene2040 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2059 YPO2060 YPO2060 znuC znuC 2338290 2339051 - high-affinity zinc uptake system ATP-binding protein Similar to Escherichia coli high-affinity zinc uptake system ATP-binding protein ZnuC SW:ZNUC_ECOLI (P52648) (251 aa) fasta scores: E(): 0%2C 77.2%25 id in 250 aa%2Cand to Pseudomonas aeruginosa zinc transport protein ZnuC TR:AAG08885 (EMBL:AE004962) (269 aa) fasta scores: E(): 0%2C60.2%25 id in 246 aa gene gene2041 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2060 YPO2061 YPO2061 znuA znuA 2339124 2340080 + exported high-affinity zinc uptake system protein Similar to Escherichia coli high-affinity zinc uptake system protein ZnuA precursor SW:ZNUA_ECOLI (P39172) (328 aa) fasta scores: E(): 0%2C 63.5%25 id in 318 aa%2C and to Haemophilus ducreyi high-affinity zinc uptake system protein ZnuA TR:Q9RPX0 (EMBL:AF141971) (310 aa) fasta scores: E(): 0%2C 43.5%25 id in 310 aa gene gene2042 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2061 YPO2062 YPO2062 YPO2062 2340164 2341417 + putative M23/M37 peptidase-family protein Similar to Escherichia coli hypothetical protein YebA SW:YEBA_ECOLI (P24204) (419 aa) fasta scores: E(): 0%2C72.8%25 id in 419 aa%2C and to Vibrio cholerae hypothetical protein VC0503 vc0503 TR:Q9KUL5 (EMBL:AE004136) (426 aa) fasta scores: E(): 0%2C 36.2%25 id in 412 aa gene gene2043 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2062 YPO2063 YPO2063 msbB msbB 2341684 2342646 + lipid A biosynthesis acyltransferase Similar to Escherichia coli lipid A biosynthesis (Kdo)2-(lauroyl)-lipid IVA acyltransferase MsbB SW:MSBB_ECOLI (P24205) (323 aa) fasta scores: E(): 0%2C 65.0%25 id in 320 aa%2C and to Salmonella typhimurium lipid A acyltransferase MsbB TR:Q9ZI82 (EMBL:AF039020) (323 aa) fasta scores: E(): 0%2C 65.0%25 id in 320 aa gene gene2044 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2063 YPO2064 YPO2064 pykA pykA 2342991 2344433 - pyruvate kinase II Similar to Escherichia coli pyruvate kinase II PykA SW:KPY2_ECOLI (P21599) (479 aa) fasta scores: E(): 0%2C 89.6%25 id in 479 aa%2C and to Haemophilus influenzae pyruvate kinase PykA SW:KPYK_HAEIN (P43924) (477 aa) fasta scores: E(): 0%2C75.4%25 id in 479 aa gene gene2045 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2064 YPO2065 YPO2065 hexR hexR 2344763 2345632 - hex regulon repressor Similar to Escherichia coli hex regulon repressor HexR SW:HEXR_ECOLI (P46118) (289 aa) fasta scores: E(): 0%2C81.5%25 id in 287 aa%2C and to Vibrio cholerae hypothetical protein VC1148 TR:Q9KSV8 (EMBL:AE004195) (284 aa) fasta scores: E(): 0%2C 76.8%25 id in 284 aa gene gene2046 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2065 YPO2066 YPO2066 zwf zwf 2345985 2347469 + glucose-6-phosphate 1-dehydrogenase Similar to Escherichia coli glucose-6-phosphate 1-dehydrogenase Zwf SW:G6PD_ECOLI (P22992) (491 aa) fasta scores: E(): 0%2C 84.5%25 id in 491 aa%2C and to Erwinia chrysanthemi glucose-6-phosphate 1-dehydrogenase Zwf SW:G6PD_ERWCH (P37986) (491 aa) fasta scores: E(): 0%2C 87.8%25 id in 491 aa gene gene2047 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2066 YPO2067 YPO2067 eda eda 2347711 2348352 + KHG/KDPG aldolase Similar to Escherichia coli KHG/KDPG aldolase Eda SW:ALKH_ECOLI (P10177) (213 aa) fasta scores: E(): 0%2C 87.7%25 id in 211 aa%2C and to Erwinia chrysanthemi khg/kdpg aldolase [includes: 4-hydroxy-2-oxoglutarate aldolase Eda SW:ALKH_ERWCH (P38448) (213 aa) fasta scores: E(): 0%2C 85.0%25 id in 213 aa gene gene2048 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2067 YPO2068 YPO2068 YPO2068 2349046 2349510 + putative integral membrane protein Similar to Escherichia coli hypothetical kDa protein YdgF SW:YDGF_ECOLI (P77412) (121 aa) fasta scores: E(): 8.3e-25%2C 68.2%25 id in 110 aa%2C and to Pseudomonas aeruginosa probable drug efflux transporter PA1541 TR:AAG04930 (EMBL:AE004582) (122 aa) fasta scores: E(): 7.2e-19%2C 55.3%25 id in 114 aa gene gene2049 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2068 YPO2069 YPO2069 YPO2069 2349530 2349826 + putative integral membrane protein Similar to Escherichia coli hypothetical protein YdgE SW:YDGE_ECOLI (P77670) (109 aa) fasta scores: E(): 9.5e-27%2C 78.6%25 id in 98 aa%2C and to Bacillus subtilis multidrug resistance protein EbrB SW:EBRB_BACSU (O31791) (117 aa) fasta scores: E(): 2.8e-09%2C 38.8%25 id in 98 aa gene gene2050 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2069 YPO2070 YPO2070 YPO2070 2349958 2350302 - conserved hypothetical protein Similar to Escherichia coli hypothetical protein YoaB SW:YOAB_ECOLI (P76258) (114 aa) fasta scores: E(): 8.4e-33%2C 72.8%25 id in 114 aa%2C and to Pseudomonas aeruginosa hypothetical protein PA5303 TR:AAG08688 (EMBL:AE004943) (117 aa) fasta scores: E(): 7.2e-18%2C 46.6%25 id in 116 aa gene gene2051 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2070 YPO2071 YPO2071 YPO2071 2350433 2352337 + putative DEAD box family helicase Similar to Escherichia coli probable ATP-dependent helicase YoaA SW:YOAA_ECOLI (P76257) (636 aa) fasta scores: E(): 0%2C 79.6%25 id in 628 aa%2C and to Vibrio cholerae DinG family ATP-dependent helicase VC1990 TR:Q9KQK8 (EMBL:AE004273) (646 aa) fasta scores: E(): 0%2C 64.4%25 id in 630 aa gene gene2052 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2071 YPO2072 YPO2072 YPO2072 2352409 2353107 + conserved hypothetical protein Similar to Escherichia coli hypothetical protein YeaZ SW:YEAZ_ECOLI (P76256) (231 aa) fasta scores: E(): 0%2C71.2%25 id in 229 aa%2C and to Vibrio cholerae hypothetical protein VC1989 vc1989 TR:Q9KQK9 (EMBL:AE004273) (237 aa) fasta scores: E(): 0%2C 55.7%25 id in 237 aa gene gene2053 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2072 YPO2073 YPO2073 YPO2073 2353262 2353849 + putative lipoprotein Similar to Escherichia coli hypothetical protein B1806 TR:P76255 (EMBL:AE000275) (193 aa) fasta scores: E(): 0%2C 63.2%25 id in 185 aa%2C and to Escherichia coli outer membrane protein Slp SW:SLP_ECOLI (P37194) (188 aa) fasta scores: E(): 8.8e-20%2C 39.4%25 id in 165 aa gene gene2054 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2073 YPO2074 YPO2074 fadD fadD 2354492 2356180 + long-chain-fatty-acid-CoA ligase Similar to Escherichia coli long-chain-fatty-acid--CoA ligase FadD SW:LCFA_ECOLI (P29212) (561 aa) fasta scores: E(): 0%2C 80.1%25 id in 552 aa%2Cand to Vibrio cholerae long-chain-fatty-acid--CoA ligase VC1985 TR:Q9KQL3 (EMBL:AE004273) (566 aa) fasta scores: E(): 0%2C 73.8%25 id in 553 aa gene gene2055 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2074 YPO2075 YPO2075 rnd rnd 2356340 2357461 + ribonuclease D Similar to Escherichia coli ribonuclease D Rnd SW:RND_ECOLI (P09155) (375 aa) fasta scores: E(): 0%2C 67.6%25 id in 373 aa%2C and to Vibrio cholerae ribonuclease D VC1984 TR:Q9KQL4 (EMBL:AE004273) (381 aa) fasta scores: E(): 0%2C51.8%25 id in 367 aa gene gene2056 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2075 YPO2076 YPO2076 minE minE 2357698 2357967 - cell division topological specificity factor Similar to Escherichia coli cell division topological specificity factor MinE SW:MINE_ECOLI (P18198) (88 aa) fasta scores: E(): 1.9e-28%2C 82.6%25 id in 86 aa%2C and to Buchnera aphidicola (subsp. Acyrthosiphon pisum) cell division topological specificity factor MinE SW:MINE_BUCAI (P57410) (83 aa) fasta scores: E(): 1.8e-22%2C 67.5%25 id in 83 aa gene gene2057 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2076 YPO2077 YPO2077 minD minD 2357971 2358783 - septum site-determining protein Similar to Escherichia coli septum site-determining protein MinD SW:MIND_ECOLI (P18197) (269 aa) fasta scores: E(): 0%2C 91.8%25 id in 269 aa%2C and to Buchnera aphidicola (subsp. Acyrthosiphon pisum) septum site-determining protein MinD TR:BAB13034 (EMBL:AP001119) (270 aa) fasta scores: E(): 0%2C 81.8%25 id in 269 aa gene gene2058 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2077 YPO2078 YPO2078 minC minC 2358808 2359494 - cell division inhibitor Similar to Escherichia coli cell division inhibitor MinC%2C septum site-determining protein SW:MINC_ECOLI (P18196) (231 aa) fasta scores: E(): 0%2C 64.9%25 id in 231 aa%2Cand to Vibrio cholerae probable septum site-determining protein MinC TR:Q9KQN9 (EMBL:AE004271) (220 aa) fasta scores: E(): 0%2C 49.8%25 id in 227 aa gene gene2059 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2078 YPO2079 YPO2079 YPO2079 2359920 2360183 - hypothetical protein No significant database hits. Doubtful CDS gene gene2060 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2079 YPO2080 YPO2080 YPO2080 2360215 2360487 + conserved hypothetical protein Similar to Escherichia coli protein YcgL SW:YCGL_ECOLI (P76003) (108 aa) fasta scores: E(): 2.9e-24%2C71.8%25 id in 85 aa%2C and to Vibrio cholerae hypothetical protein VC1957 vc1957 TR:Q9KQP1 (EMBL:AE004271) (102 aa) fasta scores: E(): 6.1e-19%2C 60.0%25 id in 90 aa gene gene2061 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2080 YPO2081 YPO2081 YPO2081 2360628 2361713 + putative lipoprotein Similar to Escherichia coli membrane-bound lytic murein transglycosylase B protein MltB SW:MLTB_ECOLI (P41052) (361 aa) fasta scores: E(): 1.8e-18%2C 28.5%25 id in 347 aa%2C and to Vibrio cholerae putative lytic murein transglycosylase VC1956 TR:Q9KQP2 (EMBL:AE004271) (323 aa) fasta scores: E(): 0%2C 48.3%25 id in 298 aa gene gene2062 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2081 YPO2082 YPO2082 YPO2082 2361784 2362440 + putative fumarylacetoacetate hydrolase family protein Similar to Escherichia coli hypothetical protein YcgM SW:YCGM_ECOLI (P76004) (219 aa) fasta scores: E(): 0%2C72.1%25 id in 219 aa%2C and to Pseudomonas aeruginosa hypothetical protein PA0318 TR:AAG03707 (EMBL:AE004470) (221 aa) fasta scores: E(): 0%2C 50.2%25 id in 219 aa gene gene2063 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2082 YPO2083 YPO2083 YPO2083 2362543 2362989 + conserved hypothetical protein Similar to Escherichia coli hypothetical protein YcgN SW:YCGN_ECOLI (P76005) (153 aa) fasta scores: E(): 0%2C85.1%25 id in 148 aa%2C and to Escherichia coli hypothetical protein YcgN TR:Q9R3F1 (EMBL:AE000216) (158 aa) fasta scores: E(): 0%2C 85.1%25 id in 148 aa gene gene2064 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2083 YPO2084 YPO2084 int int 2363019 2364233 - putative phage integrase (pseudogene) Similar to Escherichia coli O157:H7 integrase Int TR:Q9EY96 (EMBL:AP000400) (428 aa) fasta scores: E(): 3.9e-94%2C 54.118%25 id in 425 aa%2C and to Escherichia coli putative lambdoid prophage RAC integrase IntR SW:INTR_ECOLI (P76056) (411 aa) fasta scores: E(): 2e-66%2C 41.346%25 id in 416 aa. CDS is disrupted by the insertion of an IS100 element after codon 24 pseudogene gene2065 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2084 YPO2085 YPO2085 y1093 y1093 2364324 2365346 + transposase for insertion sequence IS100 Similar to Escherichia coli transposase for insertion sequence element IS21 IstA SW:ISTA_ECOLI (P15025) (390 aa) fasta scores: E(): 3e-27%2C 33.1%25 id in 329 aa. Identical to the previously sequenced Yersinia pestis%2CYersinia pseudotuberculosis%2C and Escherichia coli pesticin plasmid insertion sequence transposase Y1055 TR:P74993 (EMBL:U59875) (340 aa) fasta scores: E(): 0%2C 100.0%25 id in 340 aa gene gene2066 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2085 YPO2086 YPO2086 ypmt1.57c ypmt1.57c 2365343 2366125 + insertion sequence IS100%2C ATP-binding protein Similar to Escherichia coli insertion sequence IS21 putative ATP-binding protein%2C IstB SW:ISTB_ECOLI (P15026) (265 aa) fasta scores: E(): 0%2C 47.4%25 id in 249 aa. Also almost identical to Yersinia pestis and Escherichia coli putative IS100 transposase ypmt1.57c TR:Q9R3L5 (EMBL:AL117211) (260 aa) fasta scores: E(): 0%2C 99.6%25 id in 260 aa. gene gene2067 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2086 YPO2087 YPO2087 YPO2087 2366293 2366553 - putative phage excisionase Similar to Escherichia coli O157:H7 VT2-Sakai prophage excisionase Xis TR:Q9KXH5 (EMBL:AP000422) (99 aa) fasta scores: E(): 1.7e-10%2C 43.5%25 id in 69 aa. CDS lacks amino acids in the N-terminal region in comparison to the E. coli protein gene gene2068 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2087 YPO2087a YPO2087a YPO2087a 2366631 2366834 - putative phage protein Weak similarity to the N-terminal region of bacteriophage VT2-Sa hypothetical protein TR:Q9T1L4 (EMBL:AP000363) (139 aa) fasta scores: E(): 7.8%2C 33.333%25 id in 48 aa gene gene2069 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2087a YPO2088 YPO2088 YPO2088 2366853 2367497 - putative methyltransferase Similar to the C-terminal regions of Curtobacterium albidum methyltransferase TR:P71101 (EMBL:D82028) (280 aa) fasta scores: E(): 1.2e-20%2C 37.7%25 id in 204 aa%2C and Xylella fastidiosa methyltransferase XF0935 TR:Q9PEU3 (EMBL:AE003932) (311 aa) fasta scores: E(): 1.4e-16%2C 36.3%25 id in 212 aa gene gene2070 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2088 YPO2089 YPO2089 ninB ninB 2367596 2368024 + putative phage protein Similar to bacteriophage lambda protein NinB SW:NINB_LAMBD (P03765) (146 aa) fasta scores: E(): 8.8e-30%2C57.6%25 id in 132 aa%2C and to bacteriophage P22 protein NinB SW:NINB_BPP22 (Q38662) (145 aa) fasta scores: E(): 3.8e-28%2C57.3%25 id in 131 aa gene gene2071 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2089 YPO2090 YPO2090 YPO2090 2368098 2368703 + putative phage protein Similar to bacteriophage lambda protein NinG SW:NING_LAMBD (P03770) (204 aa) fasta scores: E(): 4.4e-27%2C42.6%25 id in 204 aa%2C and to bacteriophage P22 protein NinG SW:NING_BPP22 (Q38667) (203 aa) fasta scores: E(): 1.8e-25%2C41.6%25 id in 197 aa gene gene2072 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2090 YPO2091 YPO2091 YPO2091 2368704 2369093 + putative phage antitermination protein Similar to bacteriophage H19B antitermination protein Q SW:REGQ_BPH19 (O48429) (144 aa) fasta scores: E(): 0%2C 64.6%25 id in 127 aa%2C and to bacteriophage VT2-Sa antitermination protein Q SW:REGQ_BP933 (Q9ZWW9) (144 aa) fasta scores: E(): 0%2C 62.2%25 id in 127 aa gene gene2073 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2091 YPO2092 YPO2092 YPO2092 2369097 2369315 + hypothetical phage protein Poor databases matches%2C similar to N-terminus of Shigella flexneri insertion sequence protein IS2 DNA TR:Q54157 (EMBL:Z23101) (179 aa) fasta scores: E(): 2e-05%2C49.1%25 id in 57 aa. Possible gene remnant gene gene2074 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2092 YPO2093 YPO2093 YPO2093 2369364 2369927 + putative phage protein Similar to N-terminal regions of bacteriophage APSE-1 protein p43 TR:Q9T1Q5 (EMBL:AF157835) (256 aa) fasta scores: E(): 3.3e-19%2C 46.5%25 id in 129 aa%2C and to Xylella fastidiosa phage-related protein XF1645 TR:Q9PCW0 (EMBL:AE003991) (315 aa) fasta scores: E(): 1.5e-18%2C 48.6%25 id in 107 aa. Possible gene remnant gene gene2075 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2093 YPO2094 YPO2094 YPO2094 2370012 2370194 - hypothetical phage protein No significant database matches gene gene2076 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2094 YPO2095 YPO2095 YPO2095 2370351 2370560 + hypothetical phage protein No significant database matches gene gene2077 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2095 YPO2096 YPO2096 YPO2096 2370557 2370832 - hypothetical phage protein No significant database matches gene gene2078 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2096 YPO2097 YPO2097 YPO2097 2370955 2371275 + putative phage protein C-terminus similar to bacteriophage PS34 protein gp13 TR:O80287 (EMBL:AJ011580) (67 aa) fasta scores: E(): 4.2e-10%2C 53.1%25 id in 64 aa. Possible alternative translational start site gene gene2079 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2097 YPO2098 YPO2098 YPO2098 2371306 2371818 + putative phage lysozyme Similar to bacteriophage P1 lysozyme LysA SW:LYCV_BPP1 (Q37875) (185 aa) fasta scores: E(): 4.3e-29%2C52.3%25 id in 176 aa%2C and to Serratia marcescens putative phage lysozyme NucD TR:Q54419 (EMBL:U11698) (179 aa) fasta scores: E(): 1.8e-19%2C 39.8%25 id in 171 aa gene gene2080 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2098 YPO2099 YPO2099 rzpR rzpR 2371803 2372261 + putative prophage endopeptidase Similar to Escherichia coli putative endopeptidase from lambdoid prophage RAC RzpR SW:RZPR_ECOLI (P77551) (147 aa) fasta scores: E(): 1.7e-14%2C 41.7%25 id in 151 aa%2C and to Salmonella typhimurium gp15 protein TR:Q56118 (EMBL:X67137) (156 aa) fasta scores: E(): 2.4e-14%2C 40.1%25 id in 152 aa gene gene2081 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2099 YPO2100 YPO2100 YPO2100 2372723 2373520 + phage regulatory protein Similar to bacteriophage P1 antirepressor 2 protein Ant2 TR:CAA33660 (EMBL:X15639) (239 aa) fasta scores: E(): 3.9e-18%2C 36.4%25 id in 209 aa%2C and to bacteriophage HK022 DNA-binding protein Roi TR:Q37926 (EMBL:U47336) (241 aa) fasta scores: E(): 1.8e-10%2C 29.6%25 id in 243 aa gene gene2082 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2100 YPO2101 YPO2101 YPO2101 2373977 2374612 + hypothetical phage protein No significant database matches gene gene2083 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2101 YPO2102 YPO2102 YPO2102 2374643 2375092 + hypothetical phage protein No significant database matches gene gene2084 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2102 YPO2103 YPO2103 YPO2103 2376971 2377915 + putative phage terminase (pseudogene) N-terminal region is similar to the N-terminus of Escherichia coli O157:H7 large subunit terminase H0128 TR:Q9KXC8 (EMBL:AP000422) (449 aa) fasta scores: E(): 1.3e-29%2C 44.6%25 id in 195 aa. CDS has been disrupted by a IS285 element inserted after codon 185 pseudogene gene2085 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2103 YPO2104 YPO2104 y1062 y1062 2375728 2376936 + transposase for the IS285 insertion element Previously sequenced Yersinia pestis transposase Y1062 or Ypmt1.80C TR:O68779 (EMBL:AF053947) (402 aa) fasta scores: E(): 0%2C 100.0%25 id in 402 aa. gene gene2086 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2104 YPO2106 YPO2106 YPO2106 2378644 2379300 + putative phage protein (pseudogene) Similar to the N-terminal region of bacteriophage MB78 60 kDa protein gp62 TR:Q9T0Q3 (EMBL:Y19202) (540 aa) fasta scores: E(): 1.5e-19%2C 30.689%25 id in 479 aa. CDS contains a nonsence mutation (ochre) after codon 242 pseudogene gene2087 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2106 YPO2108 YPO2108 YPO2108 2379304 2380416 + hypothetical phage protein No significant database matches gene gene2088 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2108 YPO2109 YPO2109 YPO2109 2380538 2381311 + hypothetical phage protein No significant database matches gene gene2089 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2109 YPO2110 YPO2110 YPO2110 2381325 2382530 + putative phage protein C-terminal region is similar to Yersinia pestis pMT-1 plasmid hypothetical protein YPMT1.20c TR:O68736 (EMBL:AF074611) (220 aa) fasta scores: E(): 8.9e-07%2C 29.5%25 id in 220 aa. C-terminal region of the CDS is similar to the C-terminus of Yersinia enterocolitica lytic bacteriophage phiYeO3-12 minor capsid protein 10B TR:Q9T108 (EMBL:AJ251805) (433 aa) fasta scores: E(): 1.4e-05%2C 50.6%25 id in 81 aa gene gene2090 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2110 YPO2111 YPO2111 YPO2111 2382530 2383060 + hypothetical phage protein No significant database matches gene gene2091 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2111 YPO2112 YPO2112 YPO2112 2383057 2383311 + conserved hypothetical phage protein Similar to Yersinia pestis pMT1 plasmid hypothetical protein YPMT1.26Ac TR:Q9ZH06 (EMBL:AF074611) (84 aa) fasta scores: E(): 1e-15%2C 54.3%25 id in 81 aa gene gene2092 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2112 YPO2113 YPO2113 YPO2113 2383313 2383663 + hypothetical phage protein No significant database matches gene gene2093 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2113 YPO2114 YPO2114 YPO2114 2383665 2384249 + hypothetical phage protein No significant database matches gene gene2094 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2114 YPO2115 YPO2115 YPO2115 2384246 2384653 + hypothetical phage protein No significant database matches gene gene2095 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2115 YPO2116 YPO2116 YPO2116 2384719 2385639 + putative phage protein C-terminal region of the CDS is similar to the C-terminus of bacteriophage N15 protein gp13 TR:O64327 (EMBL:AF064539) (245 aa) fasta scores: E(): 1.6e-07%2C 50.0%25 id in 92 aa%2C and to Yersinia pestis hypothetical protein YPMT1.14C TR:O68731 (EMBL:AF053947) (248 aa) fasta scores: E(): 4.7e-06%2C 30.2%25 id in 192 aa gene gene2096 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2116 YPO2117 YPO2117 YPO2117 2385652 2385963 + hypothetical phage protein No significant database matches gene gene2097 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2117 YPO2118 YPO2118 YPO2118 2386050 2386271 + hypothetical phage protein No significant database matches gene gene2098 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2118 YPO2119 YPO2119 YPO2119 2386272 2389775 + putative phage tail protein C-terminal region is similar to bacteriophage lambda minor tail protein precursor H SW:VMTH_LAMBD (P03736) (853 aa) fasta scores: E(): 0%2C 28.1%25 id in 915 aa%2C and to bacteriophage N15 protein gp16 TR:O64330 (EMBL:AF064539) (838 aa) fasta scores: E(): 1.5e-23%2C 29.4%25 id in 889 aa gene gene2099 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2119 YPO2120 YPO2120 YPO2120 2389778 2390119 + putative phage protein Similar to bacteriophage HK022 protein gp17 TR:Q9MCU5 (EMBL:AF069308) (112 aa) fasta scores: E(): 3.4e-17%2C 45.6%25 id in 114 aa%2C and to bacteriophage N15 protein gp17 TR:O64331 (EMBL:AF064539) (115 aa) fasta scores: E(): 6.9e-17%2C 46.6%25 id in 116 aa gene gene2100 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2120 YPO2121 YPO2121 tnp tnp 2390424 2390882 + transposase for the IS1541 insertion element Similar to Salmonella typhimurium and Salmonella typhi transposase for insertion sequence IS200%2C TnpA%2CSW:TNPA_SALTY (Q57334) (152 aa) fasta scores: E(): 0%2C 93.4%25 id in 152 aa. Almost identical to the Yersinia pseudotuberculosis IS1541-like element transposase Tnp TR:Q9X9F5 (EMBL:AJ238014) (152 aa) fasta scores: E(): 0%2C99.3%25 id in 152 aa gene gene2101 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2121 YPO2122 YPO2122 YPO2122 2391003 2391755 + putative phage protein Similar to bacteriophage N15 protein gp18 TR:O64332 (EMBL:AF064539) (251 aa) fasta scores: E(): 0%2C 66.4%25 id in 250 aa%2C and to bacteriophage HK022 protein gp18 TR:Q9MCU4 (EMBL:AF069308) (251 aa) fasta scores: E(): 0%2C 67.6%25 id in 250 aa gene gene2102 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2122 YPO2123 YPO2123 YPO2123 2391758 2392468 + putative phage minor tail protein Similar to bacteriophage N15 protein gp19 TR:O64333 (EMBL:AF064539) (243 aa) fasta scores: E(): 0%2C 76.4%25 id in 233 aa%2C and to bacteriophage HK022 protein gp19 TR:Q9MCU3 (EMBL:AF069308) (236 aa) fasta scores: E(): 0%2C 76.0%25 id in 233 aa gene gene2103 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2123 YPO2124 YPO2124 YPO2124 2392729 2393361 + hypothetical phage protein No significant database matches gene gene2104 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2124 YPO2125 YPO2125 YPO2125 2393440 2393979 - putative phage regulatory protein Internal region similar to bacteriophage P22 regulatory protein Mnt SW:RMNT_BPP22 (P03049) (82 aa) fasta scores: E(): 0.00074%2C 31.3%25 id in 83 aa%2C and bacteriophage P22 transcriptional repressor Arc SW:RARC_BPP22 (P03050) (53 aa) fasta scores: E(): 0.73%2C 41.3%25 id in 46 aa gene gene2105 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2125 YPO2126 YPO2126 YPO2126 2394149 2395243 + putative phage protein Internal region similar to bacteriophage N15 protein gp30 TR:O64341 (EMBL:AF064539) (264 aa) fasta scores: E(): 2.1e-21%2C 40.0%25 id in 200 aa%2C and Staphylococcus aureus prophage phiPV83 antirepressor protein TR:Q9MBT0 (EMBL:AB044554) (265 aa) fasta scores: E(): 5.4e-08%2C 35.4%25 id in 158 aa gene gene2106 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2126 YPO2127 YPO2127 YPO2127 2395342 2395893 + putative phage-related membrane protein No significant database matches gene gene2107 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2127 YPO2128 YPO2128 YPO2128 2395901 2396251 + putative phage-related lipoprotein No significant database matches gene gene2108 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2128 YPO2129 YPO2129 YPO2129 2396307 2396927 + putative phage tail assembly protein Similar to bacteriophage lambda tail assembly protein I I SW:VTAI_LAMBD (P03730) (223 aa) fasta scores: E(): 2.4e-13%2C 35.7%25 id in 210 aa%2C and to Yersinia pestis pMT1 plasmid hypothetical protein YPMT1.07C TR:O68725 (EMBL:AF074611) (195 aa) fasta scores: E(): 9e-07%2C 32.1%25 id in 209 aa gene gene2109 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2129 YPO2130 YPO2130 YPO2130 2397102 2397413 - hypothetical phage protein No significant database matches gene gene2110 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2130 YPO2131 YPO2131 YPO2131 2397499 2400702 + putative phage host specificity protein Similar to bacteriophage lambda host specificity protein J SW:VHSJ_LAMBD (P03749) (1132 aa) fasta scores: E(): 0%2C 29.5%25 id in 1056 aa%2C and to bacteriophage N15 protein gp21 TR:O64335 (EMBL:AF064539) (1061 aa) fasta scores: E(): 0%2C 58.7%25 id in 1041 aa gene gene2111 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2131 YPO2132 YPO2132 YPO2132 2400702 2401700 + hypothetical phage protein No significant database matches to the full length CDS. Weak similarity to internal region of oat chlorotic stunt virus coat protein TR:Q83928 (EMBL:X83964) (454 aa) fasta scores: E(): 1.4%2C 22.1%25 id in 339 aa gene gene2112 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2132 YPO2133 YPO2133 YPO2133 2401717 2402634 + hypothetical phage protein No significant database matches to the full length CDS. N-terminal region is similar to N-terminus of Yersinia pestis putative phage tail protein YPMT1.04C TR:Q9RIE3 (EMBL:AL117211) (962 aa) fasta scores: E(): 0.00028%2C 24.4%25 id in 193 aa%2C and to bacteriophage N15 protein gp25 TR:O64338 (EMBL:AF064539) (470 aa) fasta scores: E(): 0.014%2C 24.8%25 id in 137 aa gene gene2113 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2133 YPO2134 YPO2134 YPO2134 2402645 2403064 + putative phage tail fiber assembly protein Similar to bacteriophage APSE-1 probable tail fiber assembly protein 37 SW:TFA_BPAPS (Q9T1R1) (155 aa) fasta scores: E(): 9.9e-08%2C 30.5%25 id in 151 aa. C-terminal region of the CDS is similar to the C-terminus of bacteriophage lambda tail fiber assembly protein Tfa SW:TFA_LAMBD (P03740) (194 aa) fasta scores: E(): 7.9e-06%2C 33.7%25 id in 98 aa gene gene2114 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2134 YPO2135 YPO2135 YPO2135 2403061 2403216 + hypothetical phage protein No significant database matches gene gene2115 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2135 YPO2136 YPO2136 y1062 y1062 2403285 2404493 - transposase for the IS285 insertion element Previously sequenced Yersinia pestis transposase Y1062 or Ypmt1.80C TR:O68779 (EMBL:AF053947) (402 aa) fasta scores: E(): 0%2C 100.0%25 id in 402 aa. gene gene2116 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2136 YPO2137 YPO2137 YPO2137 2404798 2405970 - conserved hypothetical phage protein Similar to Staphylococcus aureus hypothetical protein SA2250 TR:Q9ZGN7 (EMBL:AF076683) (397 aa) fasta scores: E(): 4.5e-08%2C 21.6%25 id in 399 aa%2C and to Escherichia coli hypothetical protein YhhS SW:YHHS_ECOLI (P37621) (419 aa) fasta scores: E(): 8.4e-08%2C 22.8%25 id in 400 aa gene gene2117 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2137 YPO2138 YPO2138 YPO2138 2405974 2407173 - putative aminotransferase Similar to Mus musculus cysteine desulfurase%2Cmitochondrial precursor NifS TR:Q9Z1J3 (EMBL:AJ222660) (459 aa) fasta scores: E(): 0%2C 48.4%25 id in 384 aa%2C and to Schizosaccharomyces pombe probable cysteine desulfurase%2Cmitochondrial precursor SPBC21d10.11C TR:O74351 (EMBL:AL031536) (498 aa) fasta scores: E(): 0%2C 48.4%25 id in 384 aa. CDS is similar to YPO2896 (409 aa) fasta scores: E(): 0%2C 51.3%25 identity in 386 aa overlap gene gene2118 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2138 YPO2139 YPO2139 YPO2139 2407190 2407930 - hypothetical phage protein No significant database matches gene gene2119 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2139 YPO2140 YPO2140 YPO2140 2409022 2409378 + hypothetical phage protein No significant database matches gene gene2120 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2140 YPO2141 YPO2141 dsbB dsbB 2409795 2410325 - disulfide bond formation protein B Similar to Escherichia coli disulfide bond formation protein B DsbB SW:DSBB_ECOLI (P30018) (176 aa) fasta scores: E(): 0%2C 73.3%25 id in 176 aa%2C and to Shigella flexneri disulfide bond formation protein B DsbB SW:DSBB_SHIFL (Q54155) (176 aa) fasta scores: E(): 0%2C 71.6%25 id in 176 aa gene gene2121 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2141 YPO2142 YPO2142 nhaB nhaB 2410561 2412135 - Na+/H+ antiporter Similar to Escherichia coli Na+/H+ antiporter NhaB SW:NHAB_ECOLI (P27377) (513 aa) fasta scores: E(): 0%2C 75.6%25 id in 513 aa%2C and to Haemophilus influenzae Na+/H+ antiporter NhaB SW:NHAB_HAEIN (P44706) (522 aa) fasta scores: E(): 0%2C 69.9%25 id in 515 aa gene gene2122 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2142 YPO2144 YPO2144 fadR fadR 2412379 2413098 + fatty acid metabolism regulatory protein Similar to Escherichia coli fatty acid metabolism regulator protein FadR SW:FADR_ECOLI (P09371) (238 aa) fasta scores: E(): 0%2C 82.1%25 id in 234 aa%2C and to Pasteurella multocida possible fatty acid metabolism regulator protein FadR TR:AAK02132 (EMBL:AE006038) (241 aa) fasta scores: E(): 0%2C 64.3%25 id in 235 aa gene gene2123 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2144 YPO2145 YPO2145 YPO2145 2413316 2414851 - conserved hypothetical protein Similar to Escherichia coli hypothetical protein YcgB SW:YCGB_ECOLI (P29013) (510 aa) fasta scores: E(): 0%2C84.6%25 id in 508 aa%2C and to Vibrio cholerae hypothetical protein VC1874 vc1874 TR:Q9KQX3 (EMBL:AE004263) (516 aa) fasta scores: E(): 0%2C 73.5%25 id in 501 aa gene gene2124 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2145 YPO2147 YPO2147 dadA dadA 2415316 2416620 + D-amino acid dehydrogenase small subunit Similar to Escherichia coli D-amino acid dehydrogenase small subunit DadA SW:DADA_ECOLI (P29011) (432 aa) fasta scores: E(): 0%2C 78.2%25 id in 431 aa%2C and to Klebsiella aerogenes D-amino acid dehydrogenase DadA TR:O30745 (EMBL:AF016253) (432 aa) fasta scores: E(): 0%2C77.7%25 id in 431 aa gene gene2125 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2147 YPO2148 YPO2148 YPO2148 2416636 2417838 - putative multidrug resistance protein Similar to Escherichia coli florfenicol exporter FloR TR:AAG16656 (EMBL:AF231986) (404 aa) fasta scores: E(): 4.4e-29%2C 31.4%25 id in 357 aa%2C and to Vibrio cholerae putative multidrug resistance protein VC0069 TR:Q9KVS0 (EMBL:AE004098) (400 aa) fasta scores: E(): 0%2C 37.2%25 id in 371 aa gene gene2126 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2148 YPO2149 YPO2149 YPO2149 2418103 2418972 - conserved hypothetical protein Similar to Pseudomonas aeruginosa hypothetical protein PA2418 TR:AAG05806 (EMBL:AE004669) (286 aa) fasta scores: E(): 0%2C 65.0%25 id in 283 aa%2C and to Streptomyces coelicolor possible chromosome condensation protein SCAC2.06C TR:CAC08479 (EMBL:AL392189) (325 aa) fasta scores: E(): 0%2C 40.1%25 id in 297 aa gene gene2127 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2149 YPO2150 YPO2150 YPO2150 2419170 2420075 + LysR-family transcriptional regulatory protein Similar to Pseudomonas aeruginosa probable transcriptional regulator PA2417 TR:AAG05805 (EMBL:AE004669) (312 aa) fasta scores: E(): 0%2C 48.8%25 id in 299 aa%2C and to Pseudomonas aeruginosa probable transcriptional regulator PA1961 TR:AAG05349 (EMBL:AE004622) (311 aa) fasta scores: E(): 0%2C 41.3%25 id in 293 aa gene gene2128 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2150 YPO2151 YPO2151 YPO2151 2420110 2421231 - putative membrane protein Similar to Ralstonia metallidurans putative nickel transport protein CnrT TR:Q9L3G0 (EMBL:AJ276513) (351 aa) fasta scores: E(): 0%2C 55.1%25 id in 352 aa%2C and to Methanobacterium thermoautotrophicum hypothetical protein MTH841 SW:Y841_METTH (O26929) (343 aa) fasta scores: E(): 8.2e-14%2C 30.3%25 id in 294 aa gene gene2129 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2151 YPO2152 YPO2152 YPO2152 2421336 2422610 - conserved hypothetical protein Similar to Escherichia coli hypothetical protein YeaH SW:YEAH_ECOLI (P76235) (427 aa) fasta scores: E(): 0%2C86.7%25 id in 421 aa%2C and to Vibrio cholerae hypothetical protein VC1873 vc1873 TR:Q9KQX4 (EMBL:AE004263) (423 aa) fasta scores: E(): 0%2C 72.7%25 id in 421 aa gene gene2130 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2152 YPO2153 YPO2153 YPO2153 2422760 2424694 - conserved hypothetical protein Similar to Escherichia coli hypothetical protein YeaG SW:YEAG_ECOLI (P77391) (644 aa) fasta scores: E(): 0%2C94.4%25 id in 644 aa%2C and to Vibrio cholerae hypothetical protein VC1872 vc1872 TR:Q9KQX5 (EMBL:AE004263) (644 aa) fasta scores: E(): 0%2C 84.0%25 id in 644 aa gene gene2131 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2153 YPO2155 YPO2155 YPO2155 2425117 2425887 + putative exported protein Similar to Escherichia coli hypothetical protein YeaF SW:YEAF_ECOLI () (248 aa) fasta scores: E(): 0%2C 56.6%25 id in 249 aa%2C and to Escherichia coli putative outer membrane protein YiaT SW:YIAT_ECOLI (P37681) (246 aa) fasta scores: E(): 0%2C 41.6%25 id in 231 aa%3B~Similar to Escherichia coli hypothetical protein YeaF SW:YEAF_ECOLI (EMBL:AE000273) (248 aa) fasta scores: E(): 0%2C 56.6%25 id in 249 aa gene gene2132 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2155 YPO2156 YPO2156 YPO2156 2425960 2426835 - conserved hypothetical protein Similar to Escherichia coli hypothetical protein YeaD SW:UP08_ECOLI (P39173) (294 aa) fasta scores: E(): 0%2C55.6%25 id in 293 aa%2C and to Vibrio cholerae hypothetical protein VC2001 TR:Q9KQJ7 (EMBL:AE004274) (296 aa) fasta scores: E(): 0%2C 37.7%25 id in 273 aa gene gene2133 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2156 YPO2157 YPO2157 gapA gapA 2427149 2428153 - glyceraldehyde 3-phosphate dehydrogenase A Similar to Escherichia coli glyceraldehyde 3-phosphate dehydrogenase A GapA SW:G3P1_ECOLI (P06977) (330 aa) fasta scores: E(): 0%2C 90.9%25 id in 330 aa%2C and to Trypanosoma brucei brucei cytosolic glyceraldehyde 3-phosphate dehydrogenase SW:G3PC_TRYBB (P10097) (330 aa) fasta scores: E(): 0%2C 84.8%25 id in 329 aa gene gene2134 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2157 YPO2158 YPO2158 YPO2158 2428492 2428905 + conserved hypothetical protein Similar to Escherichia coli hypothetical protein YeaA SW:YEAA_ECOLI (P39903) (137 aa) fasta scores: E(): 0%2C69.3%25 id in 137 aa%2C and to Pasteurella multocida hypothetical protein PM0923 TR:AAK03007 (EMBL:AE006131) (130 aa) fasta scores: E(): 4.1e-32%2C 57.1%25 id in 126 aa gene gene2135 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2158 YPO2159 YPO2159 YPO2159 2428976 2429248 + conserved hypothetical protein Similar to Escherichia coli hypothetical protein YeaC SW:YEAC_ECOLI (P76231) (90 aa) fasta scores: E(): 7.7e-23%2C 70.7%25 id in 82 aa%2C and to Vibrio cholerae hypothetical protein VC1996 TR:Q9KQK2 (EMBL:AE004274) (95 aa) fasta scores: E(): 1.5e-16%2C 46.2%25 id in 91 aa gene gene2136 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2159 YPO2160 YPO2160 nam nam 2429382 2430029 - putative pyrazinamidase/nicotinamidase Similar to Escherichia coli pyrazinamidase/nicotinamidase [includes: pyrazinamidase (EC 3.5.1.*) (PZAse)%3B nicotinamidase(EC 3.5.1.19) (nicotine deamidase)] PncA SW:PNCA_ECOLI (P21369) (213 aa) fasta scores: E(): 0%2C 65.2%25 id in 201 aa%2C and to Vibrio cholerae pyrazinamidase/nicotinamidase vca0712 TR:Q9KLN1 (EMBL:AE004400) (206 aa) fasta scores: E(): 0%2C 48.3%25 id in 209 aa gene gene2137 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2160 YPO2161 YPO2161 ansA ansA 2430044 2431060 - L-asparaginase I Similar to Escherichia coli L-asparaginase I AnsA SW:ASG1_ECOLI (P18840) (338 aa) fasta scores: E(): 0%2C 83.3%25 id in 335 aa%2C and to Vibrio cholerae L-asparaginase I VC1995 TR:Q9KQK3 (EMBL:AE004274) (337 aa) fasta scores: E(): 0%2C 71.4%25 id in 336 aa gene gene2138 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2161 YPO2162 YPO2162 sppA sppA 2431177 2433027 - protease IV Similar to Escherichia coli protease IV SppA SW:SPPA_ECOLI (P08395) (618 aa) fasta scores: E(): 0%2C 67.7%25 id in 619 aa%2C and to Vibrio cholerae protease IV VC1994 TR:Q9KQK4 (EMBL:AE004274) (616 aa) fasta scores: E(): 0%2C47.5%25 id in 617 aa gene gene2139 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2162 YPO2163 YPO2163 YPO2163 2433190 2433741 + putative nitroreductase Similar to Escherichia coli hypothetical protein YdjA SW:YDJA_ECOLI (P24250) (183 aa) fasta scores: E(): 0%2C65.0%25 id in 183 aa%2C and to Vibrio cholerae hypothetical protein VC1048 vc1048 TR:Q9KT57 (EMBL:AE004186) (182 aa) fasta scores: E(): 0%2C 59.6%25 id in 183 aa gene gene2140 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2163 YPO2164 YPO2164 fdhB fdhB 2433966 2435012 + selenide%2C water dikinase Similar to Escherichia coli selenide%2C water dikinase (selenophosphate synthetase) SelD SW:SELD_ECOLI (P16456) (347 aa) fasta scores: E(): 0%2C 75.4%25 id in 346 aa%2C and to Haemophilus influenzae selenide%2C water dikinase SelD SW:SELD_HAEIN (P43911) (348 aa) fasta scores: E(): 0%2C 66.8%25 id in 343 aa gene gene2141 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2164 YPO2165 YPO2165 topB topB 2435071 2436999 + DNA topoisomerase III Similar to Escherichia coli DNA topoisomerase III TopB SW:TOP3_ECOLI (P14294) (653 aa) fasta scores: E(): 0%2C82.8%25 id in 641 aa%2C and to Vibrio cholerae DNA topoisomerase III TopB TR:Q9KQF5 (EMBL:AE004278) (647 aa) fasta scores: E(): 0%2C 57.9%25 id in 651 aa gene gene2142 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2165 YPO2166 YPO2166 YPO2166 2436996 2437286 + putative exported protein Similar to Escherichia coli hypothetical protein precursor YnjH SW:YNJH_ECOLI (P76227) (90 aa) fasta scores: E(): 3e-13%2C 53.9%25 id in 76 aa gene gene2143 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2166 YPO2167 YPO2167 nudG nudG 2437299 2437685 - putative pyrophosphohydrolase Similar to Escherichia coli CTP pyrophosphohydrolase NudG TR:P77788 (EMBL:AE000270) (135 aa) fasta scores: E(): 5e-30%2C 65.4%25 id in 127 aa%2C and to Xylella fastidiosa bifunctional dGTP-pyrophosphohydrolase/thiamine phosphate synthase XF1120 TR:Q9PEA8 (EMBL:AE003948) (320 aa) fasta scores: E(): 2.7e-13%2C 43.3%25 id in 120 aa gene gene2144 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2167 YPO2168 YPO2168 xth xth 2437783 2438589 - exodeoxyribonuclease III Similar to Escherichia coli exodeoxyribonuclease III XthA SW:EX3_ECOLI (P09030) (268 aa) fasta scores: E(): 0%2C80.1%25 id in 266 aa%2C and to Salmonella typhimurium exodeoxyribonuclease III XthA SW:EX3_SALTY (Q9Z612) (268 aa) fasta scores: E(): 0%2C 78.6%25 id in 266 aa gene gene2145 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2168 YPO2169 YPO2169 YPO2169 2439399 2440259 + putative LysR-family transcriptional regulatory protein Similar to Escherichia coli hypothetical transcriptional regulator YgfI SW:YGFI_ECOLI (P52044) (303 aa) fasta scores: E(): 6.1e-05%2C 21.2%25 id in 283 aa%2C and to Aquifex aeolicus transcriptional regulator LysR1 TR:O66882 (EMBL:AE000699) (303 aa) fasta scores: E(): 0.00015%2C 21.9%25 id in 288 aa. CDS DNA has a low G+C content%2C 29.15%25 gene gene2146 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2169 YPO2170 YPO2170 y1062 y1062 2441131 2442339 + transposase for the IS285 insertion element Previously sequenced Yersinia pestis transposase Y1062 or Ypmt1.80C TR:O68779 (EMBL:AF053947) (402 aa) fasta scores: E(): 0%2C 100.0%25 id in 402 aa. gene gene2148 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2170 YPO2171 YPO2171 purU purU 2441000 2441053 - formyltetrahydrofolate deformylase (pseudogene) CDS is disrupted by the insertion of IS285 element after codon 265. The insertion occurred near the C-terminus. It is not clear whether this insertion affects the function of the protein. Similar to Shigella flexneri formyltetrahydrofolate deformylase PurU SW:PURU_SHIFL (P38480) (280 aa) fasta scores: E(): 2.6e-99%2C 85.305%25 id in 279 aa%2C and to Escherichia coli formyltetrahydrofolate deformylase PurU SW:PURU_ECOLI (P37051) (280 aa) fasta scores: E(): 5.5e-99%2C 85.305%25 id in 279 aa pseudogene gene2147 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2171 YPO2172 YPO2172 YPO2172 2443255 2443719 - conserved hypothetical protein Similar to Escherichia coli hypothetical protein YchJ SW:YCHJ_ECOLI (P37052) (152 aa) fasta scores: E(): 0%2C53.2%25 id in 154 aa%2C and to Shigella flexneri hypothetical protein YchJ SW:YCHJ_SHIFL (P38481) (152 aa) fasta scores: E(): 3e-32%2C 51.3%25 id in 154 aa gene gene2149 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2172 YPO2173 YPO2173 YPO2173 2445053 2446069 + probable response regulator Similar to Erwinia carotovora subsp. carotovora virulence and RpoS regulatory protein%2C ExpM TR:O86197 (EMBL:AJ224437) (338 aa) fasta scores: E(): 0%2C 64.2%25 id in 338%2C and to Salmonella typhimurium virulence regulator MviA TR:Q56065 (EMBL:U53173) (337 aa) fasta scores: E(): 0%2C62.6%25 id in 337 aa gene gene2150 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2173 YPO2174 YPO2174 YPO2174 2446376 2447722 + putative nucleotide sugar dehydrogenase Similar to Xanthomonas campestris UDP-glucose dehydrogenase TR:Q56812 (EMBL:X79772) (445 aa) fasta scores: E(): 0%2C 61.3%25 id in 349 aa%2C and to Pseudomonas aeruginosa probable nucleotide sugar dehydrogenase PA3559 TR:AAG06947 (EMBL:AE004776) (464 aa) fasta scores: E(): 0%2C64.9%25 id in 447 aa gene gene2151 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2174 YPO2175 YPO2175 bglY bglY 2448157 2448555 - DNA-binding protein Hns Similar to Escherichia coli histone-like DNA-binding protein Hns SW:HNS_ECOLI (P08936) (136 aa) fasta scores: E(): 0%2C 84.3%25 id in 134 aa%2C and to Similar to Serratia marcescens DNA-binding protein Hns SW:HNS_SERMA (P18955) (134 aa) fasta scores: E(): 0%2C 92.5%25 id in 134 aa gene gene2152 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2175 YPO2176 YPO2176 tdk tdk 2449305 2449895 + thymidine kinase Similar to Escherichia coli thymidine kinase Tdk SW:KITH_ECOLI (P23331) (205 aa) fasta scores: E(): 0%2C 76.4%25 id in 191 aa%2C and to Vibrio cholerae thymidine kinase VC1167 TR:Q9KST9 (EMBL:AE004197) (192 aa) fasta scores: E(): 0%2C 72.6%25 id in 190 aa gene gene2153 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2176 YPO2177 YPO2177 ypmt1.57c ypmt1.57c 2450264 2451046 - insertion sequence IS100%2C ATP-binding protein Similar to Escherichia coli insertion sequence IS21 putative ATP-binding protein%2C IstB SW:ISTB_ECOLI (P15026) (265 aa) fasta scores: E(): 0%2C 47.4%25 id in 249 aa. Also almost identical to Yersinia pestis and Escherichia coli putative IS100 transposase ypmt1.57c TR:Q9R3L5 (EMBL:AL117211) (260 aa) fasta scores: E(): 0%2C 99.6%25 id in 260 aa. gene gene2154 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2177 YPO2178 YPO2178 y1093 y1093 2451043 2452065 - transposase for insertion sequence IS100 Similar to Escherichia coli transposase for insertion sequence element IS21 IstA SW:ISTA_ECOLI (P15025) (390 aa) fasta scores: E(): 3e-27%2C 33.1%25 id in 329 aa. Identical to the previously sequenced Yersinia pestis%2CYersinia pseudotuberculosis%2C and Escherichia coli pesticin plasmid insertion sequence transposase Y1055 TR:P74993 (EMBL:U59875) (340 aa) fasta scores: E(): 0%2C 100.0%25 id in 340 aa gene gene2155 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2178 YPO2180 YPO2180 adhE adhE 2452605 2455280 - aldehyde-alcohol dehydrogenase Similar to Escherichia coli aldehyde-alcohol dehydrogenase AdhE SW:ADHE_ECOLI (P17547) (890 aa) fasta scores: E(): 0%2C 90.7%25 id in 891 aa%2C and to Vibrio cholerae alcohol dehydrogenase/acetaldehyde dehydrogenase VC2033 TR:Q9KQG5 (EMBL:AE004277) (894 aa) fasta scores: E(): 0%2C77.0%25 id in 896 aa gene gene2156 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2180 YPO2181 YPO2181 YPO2181 2456087 2456731 + putative membrane protein Similar to Escherichia coli hypothetical protein YchE SW:YCHE_ECOLI (P25743) (215 aa) fasta scores: E(): 0%2C84.9%25 id in 212 aa%2C and to Buchnera aphidicola (subsp. Acyrthosiphon pisum) hypothetical protein BU267 TR:BAB12977 (EMBL:AP001118) (215 aa) fasta scores: E(): 0%2C 64.0%25 id in 211 aa gene gene2157 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2181 YPO2182 YPO2182 oppA oppA 2457569 2459206 + periplasmic oligopeptide-binding protein precursor Similar to Salmonella typhimurium periplasmic oligopeptide-binding protein precursor OppA SW:OPPA_SALTY (P06202) (542 aa) fasta scores: E(): 0%2C 78.5%25 id in 545 aa%2Cand to Escherichia coli periplasmic oligopeptide-binding protein precursor OppA SW:OPPA_ECOLI (P23843) (543 aa) fasta scores: E(): 0%2C 76.7%25 id in 545 aa gene gene2158 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2182 YPO2183 YPO2183 oppB oppB 2459293 2460213 + oligopeptide transport system permease protein Similar to Escherichia coli oligopeptide transport system permease protein OppB SW:OPPB_ECOLI (P31132) (306 aa) fasta scores: E(): 0%2C 92.5%25 id in 306 aa%2C and to Salmonella typhimurium oligopeptide transport system permease protein OppB SW:OPPB_SALTY (P08005) (306 aa) fasta scores: E(): 0%2C 91.5%25 id in 306 aa gene gene2159 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2183 YPO2184 YPO2184 oppC oppC 2460232 2461137 + oligopeptide transport system permease protein Similar to Escherichia coli oligopeptide transport system permease protein OppC SW:OPPC_ECOLI (P77664) (302 aa) fasta scores: E(): 0%2C 92.4%25 id in 301 aa%2C and to Salmonella typhimurium oligopeptide transport system permease protein OppC SW:OPPC_SALTY (P08006) (302 aa) fasta scores: E(): 0%2C 91.7%25 id in 301 aa gene gene2160 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2184 YPO2185 YPO2185 oppD oppD 2461149 2462150 + oligopeptide transport ATP-binding protein Similar to Escherichia coli oligopeptide transport ATP-binding protein OppD SW:OPPD_ECOLI (P76027) (337 aa) fasta scores: E(): 0%2C 87.3%25 id in 323 aa%2C and to Salmonella typhimurium oligopeptide transport ATP-binding protein OppD SW:OPPD_SALTY (P04285) (335 aa) fasta scores: E(): 0%2C 87.0%25 id in 322 aa gene gene2161 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2185 YPO2186 YPO2186 oppF oppF 2462147 2463148 + oligopeptide transport ATP-binding protein Similar to Escherichia coli oligopeptide transport ATP-binding protein OppF SW:OPPF_ECOLI (P77737) (334 aa) fasta scores: E(): 0%2C 90.4%25 id in 334 aa%2C and to Salmonella typhimurium oligopeptide transport ATP-binding protein OppF SW:OPPF_SALTY (P08007) (334 aa) fasta scores: E(): 0%2C 89.8%25 id in 334 aa gene gene2162 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2186 YPO2187 YPO2187 YPO2187 2464223 2464546 - conserved hypothetical protein Similar to Escherichia coli hypothetical protein YciU SW:YCIU_ECOLI (P76028) (109 aa) fasta scores: E(): 0%2C90.7%25 id in 107 aa%2C and to Vibrio cholerae hypothetical protein VC1208 vc1208 TR:Q9KSP8 (EMBL:AE004200) (106 aa) fasta scores: E(): 1.3e-21%2C 50.5%25 id in 97 aa gene gene2163 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2187 YPO2188 YPO2188 cls cls 2464711 2466171 - cardiolipin synthetase Similar to Escherichia coli cardiolipin synthetase Cls SW:CLS_ECOLI (P31071) (486 aa) fasta scores: E(): 0%2C83.5%25 id in 486 aa%2C and to Buchnera aphidicola (subsp. Acyrthosiphon pisum) cardiolipin synthetase Cls SW:CLS_BUCAI (P57361) (486 aa) fasta scores: E(): 0%2C 61.1%25 id in 486 aa gene gene2164 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2188 YPO2189 YPO2189 YPO2189 2466240 2466488 - hypothetical protein No significant database matches. Similar to CDS YPO2920 (8s aa) E(): 2.5e-23%2C 95.1%25 identity in 61 aa overlap gene gene2165 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2189 YPO2190 YPO2190 ail ail 2467211 2467750 + attachment invasion locus protein precursor Similar to Yersinia enterocolitica attachment invasion locus protein precursor Ail SW:AIL_YEREN (P16454) (178 aa) fasta scores: E(): 2.6e-29%2C 46.1%25 id in 178 aa%2Cand to Yersinia pseudotuberculosis attachment invasion locus protein precursor Ail SW:AIL_YERPS (Q56957) (182 aa) fasta scores: E(): 2.9e-28%2C 45.1%25 id in 173 aa gene gene2166 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2190 YPO2191 YPO2191 YPO2191 2467971 2468234 + hypothetical protein No significant database hits gene gene2167 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2191 YPO2192 YPO2192 YPO2192 2468818 2469114 - conserved hypothetical protein Similar to Vibrio cholerae hypothetical protein VC1702 TR:Q9KRE0 (EMBL:AE004248) (98 aa) fasta scores: E(): 8.4e-28%2C 76.5%25 id in 98 aa%2C and to Escherichia coli protein YciI SW:YCII_ECOLI (P31070) (98 aa) fasta scores: E(): 1.6e-26%2C 72.4%25 id in 98 aa gene gene2168 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2192 YPO2193 YPO2193 tonB tonB 2469415 2470173 + TonB protein Similar to Yersinia enterocolitica TonB protein SW:TONB_YEREN (Q05740) (255 aa) fasta scores: E(): 0%2C 78.6%25 id in 257 aa%2C and to Serratia marcescens TonB protein SW:TONB_SERMA (P26185) (247 aa) fasta scores: E(): 1.4e-30%2C51.8%25 id in 253 aa gene gene2169 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2193 YPO2194 YPO2194 y1062 y1062 2470209 2471417 - transposase for the IS285 insertion element Previously sequenced Yersinia pestis transposase Y1062 or Ypmt1.80C TR:O68779 (EMBL:AF053947) (402 aa) fasta scores: E(): 0%2C 100.0%25 id in 402 aa. gene gene2170 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2194 YPO2195 YPO2195 YPO2195 2471565 2472014 - putative acyl-CoA thioester hydrolase Similar to Escherichia coli putative acyl-CoA thioester hydrolase YciA precursor SW:YCIA_ECOLI (P04379) (132 aa) fasta scores: E(): 0%2C 82.4%25 id in 125 aa%2C and to Haemophilus influenzae putative acyl-CoA thioester hydrolase HI0827 SW:YCIA_HAEIN (P44886) (154 aa) fasta scores: E(): 0%2C 71.9%25 id in 121 aa gene gene2171 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2195 YPO2196 YPO2196 ispA ispA 2472094 2472636 - putative intracellular septation protein Similar to Escherichia coli probable intracellular septation protein IspZ SW:ISPZ_ECOLI (P21366) (179 aa) fasta scores: E(): 0%2C 75.8%25 id in 178 aa%2C and to Shigella flexneri intracellular septation protein IspZ SW:ISPZ_SHIFL (P95745) (179 aa) fasta scores: E(): 0%2C 75.3%25 id in 178 aa gene gene2172 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2196 YPO2197 YPO2197 YPO2197 2472867 2474601 + putative sulfate transporter (pseudogene) Similar to Vibrio cholerae probable sulfate permease family protein VCA0103 TR:Q9KN62 (EMBL:AE004353) (592 aa) fasta scores: E(): 5.2e-119%2C 55.575%25 id in 574 aa%2C and to Pseudomonas aeruginosa probable sulfate transporter PA1647 TR:Q9I378 (EMBL:AE004592) (573 aa) fasta scores: E(): 2e-76%2C 42.337%25 id in 522 aa. There is a frameshift following codon 360. The sequence has been checked and is believed to be correct pseudogene gene2173 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2197 YPO2199 YPO2199 YPO2199 2474722 2475492 - putative membrane protein Similar to Escherichia coli hypothetical protein YciC SW:YCIC_ECOLI (P21365) (247 aa) fasta scores: E(): 0%2C47.2%25 id in 250 aa%2C and to Buchnera aphidicola (subsp. Acyrthosiphon pisum) hypothetical protein BU276 TR:BAB12986 (EMBL:AP001118) (247 aa) fasta scores: E(): 9.3e-22%2C 28.0%25 id in 250 aa gene gene2174 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2199 YPO2200 YPO2200 YPO2200 2475654 2475869 + hypothetical protein No significant database hits gene gene2175 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2200 YPO2201 YPO2201 ompW ompW 2475978 2476613 + putative exported protein Similar to Escherichia coli outer membrane protein W precursor OmpW SW:OMPW_ECOLI (P21364) (212 aa) fasta scores: E(): 0%2C 58.5%25 id in 212 aa%2C and to Salmonella typhimurium outer membrane protein YciD TR:Q9KWV2 (EMBL:Y19180) (185 aa) fasta scores: E(): 0%2C 58.5%25 id in 183 aa gene gene2176 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2201 YPO2202 YPO2202 YPO2202 2476760 2477074 - putative lipoprotein Similar to Pseudomonas aeruginosa hypothetical protein PA4739 TR:AAG08125 (EMBL:AE004887) (114 aa) fasta scores: E(): 1e-05%2C 35.5%25 id in 110 aa. C-terminus is similar to an internal region of Escherichia coli osmotically inducible protein Y OsmY SW:OSMY_ECOLI (P27291) (201 aa) fasta scores: E(): 2.6e-08%2C 47.2%25 id in 72 aa gene gene2177 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2202 YPO2203 YPO2203 trpA trpA 2477417 2478223 - tryptophan synthase alpha chain Similar to Salmonella typhimurium tryptophan synthase alpha chain TrpA SW:TRPA_SALTY (P00929) (268 aa) fasta scores: E(): 0%2C 78.0%25 id in 268 aa%2C and to Escherichia coli tryptophan synthase alpha chain TrpA SW:TRPA_ECOLI (P00928) (268 aa) fasta scores: E(): 0%2C 79.1%25 id in 268 aa gene gene2178 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2203 YPO2204 YPO2204 trpB trpB 2478223 2479413 - tryptophan synthase beta chain Similar to Escherichia coli tryptophan synthase beta chain TrpB SW:TRPB_ECOLI (P00932) (396 aa) fasta scores: E(): 0%2C 90.6%25 id in 395 aa%2C and to Salmonella typhimurium tryptophan synthase beta chain TrpB SW:TRPB_SALTY (P00933) (396 aa) fasta scores: E(): 0%2C 89.9%25 id in 395 aa gene gene2179 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2204 YPO2205 YPO2205 trpC trpC 2479570 2480997 - tryptophan biosynthesis protein TrpCF Similar to Escherichia coli bifunctional tryptophan biosynthesis enzyme%2C N-(5'-phosphoribosyl)anthranilate isomerase:indole-3-glycerol-phosphate synthase%2C TrpC SW:TRPC_ECOLI (P00909) (452 aa) fasta scores: E(): 0%2C 72.3%25 id in 451 aa%2C and to Salmonella typhimurium tryptophan biosynthesis protein TrpC SW:TRPC_SALTY (P00910) (452 aa) fasta scores: E(): 0%2C 74.1%25 id in 451 aa. CDS contains additional amino acids at the N-terminus in comparison to the E. coli and S. typhimurium proteins gene gene2180 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2205 YPO2206 YPO2206 trpD trpD 2481001 2482002 - anthranilate phosphoribosyltransferase Similar to the C-terminal region of Escherichia coli anthranilate synthase component II TrpD SW:TRPG_ECOLI (P00904) (530 aa) fasta scores: E(): 0%2C 77.4%25 id in 332 aa. Full length CDS is similar to Vibrio parahaemolyticus anthranilate phosphoribosyltransferase TrpD SW:TRPD_VIBPA (P22096) (332 aa) fasta scores: E(): 0%2C 64.5%25 id in 330 aa gene gene2181 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2206 YPO2207 YPO2207 trpG trpG 2482014 2482592 - anthranilate synthase component II Similar to Serratia marcescens anthranilate synthase component II TrpG SW:TRPG_SERMA (P00900) (192 aa) fasta scores: E(): 0%2C 86.9%25 id in 191 aa%2C and to the N-terminal region of Escherichia coli anthranilate synthase component II TrpD SW:TRPG_ECOLI (P00904) (530 aa) fasta scores: E(): 0%2C 82.0%25 id in 189 aa gene gene2182 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2207 YPO2208 YPO2208 trpE trpE 2482592 2484157 - anthranilate synthase component I Similar to Escherichia coli anthranilate synthase component I TrpE SW:TRPE_ECOLI (P00895) (520 aa) fasta scores: E(): 0%2C 76.0%25 id in 520 aa%2C and to Salmonella typhimurium anthranilate synthase component I TrpE SW:TRPE_SALTY (P00898) (520 aa) fasta scores: E(): 0%2C 74.4%25 id in 520 aa gene gene2183 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2208 YPO2209 YPO2209 YPO2209 2484273 2484335 - putative trp operon leader peptide Putative trp operon leader peptide gene gene2184 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2209 YPO2210 YPO2210 YPO2210 2484364 2484492 - hypothetical protein No significant database hits gene gene2185 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2210 YPO2211 YPO2211 trpH trpH 2484609 2485508 + conserved hypothetical protein Similar to Salmonella typhimurium hypothetical protein TrpH SW:TRPH_SALTY (O54453) (289 aa) fasta scores: E(): 0%2C 71.9%25 id in 274 aa%2C and to Escherichia coli hypothetical protein TrpH SW:TRPH_ECOLI (P77766) (293 aa) fasta scores: E(): 0%2C 73.0%25 id in 274 aa gene gene2186 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2211 YPO2212 YPO2212 YPO2212 2485525 2486145 + conserved hypothetical protein Similar to Escherichia coli hypothetical protein YciO SW:YCIO_ECOLI (P45847) (206 aa) fasta scores: E(): 0%2C80.0%25 id in 205 aa%2C and to Vibrio cholerae hypothetical protein VC1178 vc1178 TR:Q9KSS8 (EMBL:AE004197) (206 aa) fasta scores: E(): 0%2C 74.3%25 id in 206 aa gene gene2187 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2212 YPO2213 YPO2213 YPO2213 2486570 2487526 + putative RNA pseudouridylate synthase-family protein N-terminal region of the CDS is similar to Bacillus subtilis ribosomal large subunit pseudouridine synthase B RluB SW:RLUB_BACSU (P35159) (229 aa) fasta scores: E(): 1.1e-24%2C 41.525%25 id in 236 aa%2C and to Escherichia coli hypothetical protein YciL SW:YCIL_ECOLI (P37765) (291 aa) fasta scores: E(): 4.8e-94%2C 83.448%25 id in 290 aa gene gene2188 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2213 YPO2214 YPO2214 btuR btuR 2487649 2488239 - cob(I)alamin adenosyltransferase Similar to Escherichia coli cob(I)alamin adenolsyltransferase BtuR SW:BTUR_ECOLI (P13040) (196 aa) fasta scores: E(): 0%2C 79.1%25 id in 196 aa%2C and to Salmonella typhimurium cob(I)alamin adenosyltransferase BtuR SW:BTUR_SALTY (P31570) (196 aa) fasta scores: E(): 0%2C 78.1%25 id in 196 aa gene gene2189 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2214 YPO2215 YPO2215 YPO2215 2488256 2489017 - putative short chain dehydrogenase Similar to Escherichia coli hypothetical oxidoreductase YciK SW:YCIK_ECOLI (P31808) (252 aa) fasta scores: E(): 0%2C 75.6%25 id in 250 aa%2C and to Vibrio cholerae possibleshort-chain dehydrogenase/reductase family oxidoreductase VC1059 TR:Q9KT46 (EMBL:AE004187) (247 aa) fasta scores: E(): 0%2C 55.2%25 id in 248 aa gene gene2190 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2215 YPO2216 YPO2216 sohB sohB 2489189 2490235 + peptidase family U7 protein Similar to Escherichia coli possible protease SohB SW:SOHB_ECOLI (P24213) (349 aa) fasta scores: E(): 0%2C 64.8%25 id in 349 aa%2C and to Vibrio cholerae putative U7 family peptidase VC1060 TR:Q9KT45 (EMBL:AE004187) (356 aa) fasta scores: E(): 0%2C 58.6%25 id in 353 aa gene gene2191 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2216 YPO2217 YPO2217 YPO2217 2490354 2490605 - conserved hypothetical protein Similar to Escherichia coli hypothetical protein YciN SW:YCIN_ECOLI (P46132) (83 aa) fasta scores: E(): 2.5e-22%2C 68.7%25 id in 83 aa%2C and to Vibrio cholerae hypothetical protein VC1731 TR:Q9KRB1 (EMBL:AE004251) (82 aa) fasta scores: E(): 1.8e-15%2C 61.3%25 id in 75 aa%3B~Similar to Vibrio cholerae hypothetical protein Vc1731 vc1731 TR:Q9KRB1 (EMBL:AE004251) (82 aa) fasta scores: E(): 1.8e-15%2C 61.3%25 id in 75 aa gene gene2192 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2217 YPO2217a YPO2217a YPO2217a 2490623 2490997 + hypothetical protein Doubtful CDS. No significant database hits gene gene2193 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2217a YPO2218 YPO2218 supX supX 2491024 2493639 + DNA topoisomerase I Similar to Escherichia coli DNA topoisomerase I TopA SW:TOP1_ECOLI (P06612) (865 aa) fasta scores: E(): 0%2C 85.3%25 id in 871 aa%2C and to Vibrio cholerae DNA topoisomerase I TopA TR:Q9KRB2 (EMBL:AE004251) (876 aa) fasta scores: E(): 0%2C 69.2%25 id in 874 aa gene gene2194 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2218 YPO2219 YPO2219 cysB cysB 2494036 2495010 + cys regulon transcriptional activator Similar to Escherichia coli cys regulon transcriptional activator CysB SW:CYSB_ECOLI (P06613) (324 aa) fasta scores: E(): 0%2C 91.7%25 id in 324 aa%2C and to Klebsiella aerogenes cys regulon transcriptional activator CysB SW:CYSB_KLEAE (P45600) (324 aa) fasta scores: E(): 0%2C92.3%25 id in 324 aa gene gene2195 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2219 YPO2220 YPO2220 YPO2220 2495346 2496203 + hypothetical protein No significant database hits gene gene2196 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2220 YPO2221 YPO2221 acn acn 2496567 2499239 + aconitate hydratase 1 Similar to Escherichia coli aconitate hydratase 1 AcnA SW:ACO1_ECOLI (P25516) (890 aa) fasta scores: E(): 0%2C76.7%25 id in 889 aa%2C and to Legionella pneumophila aconitate hydratase Acn SW:ACON_LEGPN (P37032) (891 aa) fasta scores: E(): 0%2C 65.9%25 id in 885 aa gene gene2197 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2221 YPO2222 YPO2222 ribA ribA 2499403 2499993 - GTP cyclohydrolase II Similar to Escherichia coli GTP cyclohydrolase II RibA TR:BAA14831 (EMBL:X67876) (196 aa) fasta scores: E(): 0%2C 88.3%25 id in 196 aa%2C and to Buchnera aphidicola (subsp. Acyrthosiphon pisum) GTP cyclohydrolase II RibA SW:GCH2_BUCAI (P57359) (194 aa) fasta scores: E(): 0%2C 69.4%25 id in 196 aa gene gene2198 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2222 YPO2223 YPO2223 pgpB pgpB 2500499 2501260 + phosphatidylglycerophosphatase B Similar to Escherichia coli phosphatidylglycerophosphatase B PgpB SW:PGPB_ECOLI (P18201) (254 aa) fasta scores: E(): 0%2C 57.5%25 id in 254 aa%2Cand to Haemophilus influenzae phosphatidylglycerophosphatase B PgpB SW:PGPB_HAEIN (P44570) (241 aa) fasta scores: E(): 1.5e-25%2C 34.7%25 id in 236 aa gene gene2199 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2223 YPO2224 YPO2224 YPO2224 2501429 2501740 + putative membrane protein Similar to Escherichia coli hypothetical protein YciS SW:YCIS_ECOLI (P77614) (102 aa) fasta scores: E(): 1.2e-25%2C 68.9%25 id in 103 aa%2C and to Haemophilus influenzae hypothetical protein HI1222 SW:YCIS_HAEIN (P44129) (97 aa) fasta scores: E(): 8.2e-13%2C 37.9%25 id in 87 aa gene gene2200 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2224 YPO2225 YPO2225 YPO2225 2501747 2502916 + conserved hypothetical protein Similar to Escherichia coli hypothetical protein YciM SW:YCIM_ECOLI (P45576) (389 aa) fasta scores: E(): 0%2C77.8%25 id in 388 aa%2C and to Vibrio cholerae hypothetical protein VC1912 vc1912 TR:Q9KQT6 (EMBL:AE004267) (389 aa) fasta scores: E(): 0%2C 56.3%25 id in 389 aa gene gene2201 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2225 YPO2226 YPO2226 YPO2226 2503038 2503340 - hypothetical protein No significant database hits gene gene2202 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2226 YPO2227 YPO2227 pyrF pyrF 2503807 2504544 + orotidine 5'-phosphate decarboxylase Similar to Escherichia coli orotidine 5'-phosphate decarboxylase PyrF SW:DCOP_ECOLI (P08244) (245 aa) fasta scores: E(): 0%2C 72.2%25 id in 245 aa%2C and to Salmonella typhimurium orotidine 5'-phosphate decarboxylase PyrF SW:DCOP_SALTY (P07691) (245 aa) fasta scores: E(): 0%2C 72.2%25 id in 245 aa gene gene2203 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2227 YPO2228 YPO2228 YPO2228 2504544 2504870 + translation initiation factor SUI1 family protein Similar to Escherichia coli hypothetical protein YciH SW:YCIH_ECOLI (P08245) (108 aa) fasta scores: E(): 1.3e-30%2C 80.6%25 id in 108 aa%2C and to Salmonella typhimurium hypothetical protein YciH SW:YCIH_SALTY (P20770) (108 aa) fasta scores: E(): 1e-29%2C 78.7%25 id in 108 aa%3B~Similar to Escherichia coli protein YciH SW:YCIH_ECOLI (P08245) (108 aa) fasta scores: E(): 1.3e-30%2C80.6%25 id in 108 aa gene gene2204 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2228 YPO2229 YPO2229 osmB osmB 2505108 2505323 - osmotically inducible lipoprotein B precursor Similar to Escherichia coli osmotically inducible lipoprotein B precursor OsmB SW:OSMB_ECOLI (P17873) (72 aa) fasta scores: E(): 9.1e-16%2C 79.2%25 id in 72 aa gene gene2205 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2229 YPO2230 YPO2230 araD araD 2505803 2506498 + L-ribulose-5-phosphate 4-epimerase Similar to Salmonella typhimurium L-ribulose-5-phosphate 4-epimerase AraD SW:ARAD_SALTY (P06190) (231 aa) fasta scores: E(): 0%2C 75.8%25 id in 231 aa%2Cand to Escherichia coli L-ribulose-5-phosphate 4-epimerase AraD SW:ARAD_ECOLI (P08203) (231 aa) fasta scores: E(): 0%2C74.9%25 id in 231 aa. CDS is similar to YPO3326 (256 aa) fasta scores: E(): 0%2C 69.9%25 identity in 249 aa overlap gene gene2206 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2230 YPO2231 YPO2231 YPO2231 2506527 2506775 - hypothetical protein No significant database hits gene gene2207 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2231 YPO2232 YPO2232 mipB mipB 2507109 2507774 + putative transaldolase Similar to Escherichia coli transaldolase-like protein MipB SW:MIPB_ECOLI (P78055) (220 aa) fasta scores: E(): 0%2C 68.8%25 id in 218 aa%2C and to Escherichia coli transaldolase-like protein TalC SW:TALC_ECOLI (P32669) (220 aa) fasta scores: E(): 0%2C 66.4%25 id in 220 aa gene gene2208 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2232 YPO2233 YPO2233 YPO2233 2507891 2508196 - conserved hypothetical protein C-terminal region is similar to Escherichia coli hypothetical protein YbdD SW:YBDD_ECOLI (P23518) (65 aa) fasta scores: E(): 5.7e-08%2C 50.9%25 id in 57 aa%2C and to Pseudomonas aeruginosa hypothetical protein PA4605 TR:AAG07993 (EMBL:AE004874) (67 aa) fasta scores: E(): 3.3e-07%2C 47.4%25 id in 57 aa. Possible alternative translational start sites gene gene2209 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2233 YPO2234 YPO2234 cstA cstA 2508189 2510255 - putative carbon starvation protein A Similar to Escherichia coli carbon starvation protein A CstA SW:CSTA_ECOLI (P15078) (701 aa) fasta scores: E(): 0%2C 61.4%25 id in 686 aa%2C and to Pseudomonas aeruginosa hypothetical protein PA4606 TR:AAG07994 (EMBL:AE004874) (688 aa) fasta scores: E(): 0%2C 62.2%25 id in 680 aa gene gene2210 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2234 YPO2235 YPO2235 rnb rnb 2510605 2512539 - exoribonuclease II Similar to Escherichia coli exoribonuclease II Rnb SW:RNB_ECOLI (P30850) (644 aa) fasta scores: E(): 0%2C 74.4%25 id in 644 aa%2C and to Buchnera aphidicola (subsp. Acyrthosiphon pisum) exoribonuclease II Rnb SW:RNB_BUCAI (P57354) (649 aa) fasta scores: E(): 0%2C 55.0%25 id in 644 aa gene gene2211 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2235 YPO2237 YPO2237 YPO2237 2513188 2514498 + putative integral membrane protein Similar to Burkholderia cepacia phthalate transporter OphD TR:Q9RPP3 (EMBL:AF152094) (448 aa) fasta scores: E(): 0%2C 44.4%25 id in 428 aa%2C and to Pseudomonas aeruginosa probable Mfs transporter PA4126 TR:AAG07513 (EMBL:AE004829) (434 aa) fasta scores: E(): 0%2C 45.9%25 id in 431 aa gene gene2212 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2237 YPO2238 YPO2238 YPO2238 2514533 2515534 + conserved hypothetical protein Similar to Alcaligenes eutrophus hypothetical protein TR:Q44016 (EMBL:L36817) (324 aa) fasta scores: E(): 0%2C 54.4%25 id in 318 aa%2C and to Haemophilus influenzae hypothetical protein HI1014 SW:YA14_HAEIN (P44094) (315 aa) fasta scores: E(): 0%2C 45.8%25 id in 319 aa gene gene2213 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2238 YPO2239 YPO2239 nth nth 2515717 2516358 - endonuclease III Similar to Escherichia coli endonuclease III Nth SW:END3_ECOLI (P20625) (211 aa) fasta scores: E(): 0%2C 88.5%25 id in 209 aa%2C and to Vibrio cholerae endonuclease III VC1011 TR:Q9KT92 (EMBL:AE004183) (213 aa) fasta scores: E(): 0%2C 84.4%25 id in 212 aa gene gene2214 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2239 YPO2240 YPO2240 YPO2240 2516355 2517056 - putative membrane protein Similar to Escherichia coli hypothetical protein YdgQ SW:YDGQ_ECOLI (P77179) (231 aa) fasta scores: E(): 0%2C77.4%25 id in 230 aa%2C and to Vibrio cholerae RnfE-related protein VC1012 TR:Q9KT91 (EMBL:AE004183) (230 aa) fasta scores: E(): 0%2C 65.1%25 id in 232 aa gene gene2215 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2240 YPO2241 YPO2241 YPO2241 2517053 2517682 - putative exported protein Similar to Rhodobacter capsulatus putative nitrogen fixation protein RnfG SW:RNFG_RHOCA (P97054) (217 aa) fasta scores: E(): 6.3e-26%2C 42.7%25 id in 199 aa%2C and to Escherichia coli hypothetical protein YdgQ SW:YDGP_ECOLI (P77285) (206 aa) fasta scores: E(): 0%2C 70.0%25 id in 207 aa gene gene2216 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2241 YPO2242 YPO2242 YPO2242 2517692 2518747 - putative integral membrane protein Similar to Rhodobacter capsulatus putative nitrogen fixation protein RnfD SW:RNFD_RHOCA (Q52715) (358 aa) fasta scores: E(): 0%2C 37.5%25 id in 315 aa%2C and to Escherichia coli hypothetical protein YdgO SW:YDGO_ECOLI (P76182) (352 aa) fasta scores: E(): 0%2C 68.6%25 id in 350 aa gene gene2217 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2242 YPO2243 YPO2243 YPO2243 2519275 2520168 + putative AraC-family transcriptional regulatory protein Similar to Escherichia coli right origin-binding protein Rob SW:ROB_ECOLI (P27292) (289 aa) fasta scores: E(): 1.1e-23%2C 32.1%25 id in 265 aa gene gene2218 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2243 YPO2244 YPO2244 YPO2244 2520273 2522135 - putative iron-sulfur binding NADH dehydrogenase Similar to Rhodobacter capsulatus nitrogen fixation iron-sulphur protein RnfC TR:Q52716 (EMBL:X72888) (519 aa) fasta scores: E(): 0%2C 38.7%25 id in 488 aa%2C and to Escherichia coli hypothetical protein TR:P77611 (EMBL:D90807) (740 aa) fasta scores: E(): 0%2C 65.1%25 id in 616 aa gene gene2219 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2244 YPO2245 YPO2245 YPO2245 2522185 2522751 - putative iron-sulfur protein Similar to Rhodobacter capsulatus putative iron-sulfur protein RnfB TR:Q07394 (EMBL:X72888) (187 aa) fasta scores: E(): 2e-27%2C 43.3%25 id in 171 aa%2C and to Escherichia coli putative ferredoxin-like protein in YdgM SW:YDGM_ECOLI (P77223) (192 aa) fasta scores: E(): 0%2C 72.2%25 id in 187 aa gene gene2220 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2245 YPO2246 YPO2246 YPO2246 2522751 2523332 - putative membrane protein Similar to Vibrio alginolyticus Nqr5 subunit of Na-translocating NADH-quinone reductase complex NqrE SW:NQRE_VIBAL (Q56589) (198 aa) fasta scores: E(): 8.7e-28%2C42.3%25 id in 196 aa%2C and to Escherichia coli hypothetical protein TR:P76181 (EMBL:AE000258) (193 aa) fasta scores: E(): 0%2C 88.1%25 id in 193 aa gene gene2221 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2246 YPO2247 YPO2247 YPO2247 2523460 2523903 - putative membrane protein Similar to Escherichia coli hypothetical protein in YdgK SW:YDGK_ECOLI (P76180) (146 aa) fasta scores: E(): 1.8e-24%2C 53.2%25 id in 139 aa gene gene2222 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2247 YPO2248 YPO2248 YPO2248 2525149 2525217 + gene gene2226 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2248 YPO2248 YPO2248 YPO2248 2524924 2524983 + gene gene2225 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2248 YPO2248 YPO2248 YPO2248 2525227 2525286 + gene gene2227 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2248 YPO2248 YPO2248 YPO2248 2524828 2524896 + gene gene2224 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2248 YPO2248 YPO2248 YPO2248 2525530 2525598 + gene gene2228 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2248 YPO2249 YPO2249 YPO2249 2524378 2526436 + putative toxin transporter (pseudogene) Similar to Vibrio cholerae RtxB protein TR:Q9X4W4 (EMBL:AF119150) (702 aa) fasta scores: E(): 6.3e-81%2C45.926%25 id in 675 aa%2C and to Pasteurella haemolytica leukotoxin secretion ATP-binding protein LktB SW:HLYB_PASHA (P16532) (708 aa) fasta scores: E(): 5.5e-70%2C 41.882%25 id in 659 aa. There is a frameshift and an internal deletion following codon 584. The sequence has been checked and is believed to be correct pseudogene gene2223 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2249 YPO2250 YPO2250 YPO2250 2526461 2527830 + putative toxin transport protein (pseudogene) Similar to Vibrio cholerae putative RTX toxin transporter protein RtxD TR:Q9X4W5 (EMBL:AF119150) (467 aa) fasta scores: E(): 3.5e-54%2C 40.136%25 id in 441 aa%2C and to Xylella fastidiosa hemolysin secretion protein D XF2398 TR:Q9PAU7 (EMBL:AE004049) (473 aa) fasta scores: E(): 1.6e-49%2C 37.419%25 id in 465 aa. There is a frameshift and a small internal deletion following codon 332. The sequence has been checked and is believed to be correct pseudogene gene2229 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2250 YPO2252 YPO2252 YPO2252 2527832 2529970 + putative toxin transport protein Similar to Actinobacillus pleuropneumoniae RTX-I toxin determinant B AppB SW:RT1B_ACTPL (P26760) (707 aa) fasta scores: E(): 0%2C 44.2%25 id in 703 aa%2C and to Vibrio cholerae putative toxin secretion transporter VC1446 TR:Q9KS15 (EMBL:AE004223) (721 aa) fasta scores: E(): 0%2C51.8%25 id in 704 aa gene gene2230 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2252 YPO2253 YPO2253 araA araA 2530160 2531662 - L-arabinose isomerase Similar to Escherichia coli L-arabinose isomerase AraA SW:ARAA_ECOLI (P08202) (500 aa) fasta scores: E(): 0%2C73.6%25 id in 500 aa%2C and to Salmonella typhimurium L-arabinose isomerase AraA SW:ARAA_SALTY (P06189) (500 aa) fasta scores: E(): 0%2C 73.2%25 id in 500 aa gene gene2231 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2253 YPO2254 YPO2254 araB araB 2531746 2533449 - L-ribulokinase Similar to Escherichia coli L-ribulokinase AraB SW:KIRI_ECOLI (P08204) (565 aa) fasta scores: E(): 0%2C 72.2%25 id in 553 aa%2C and to Salmonella typhimurium L-ribulokinase AraB SW:KIRI_SALTY (P06188) (569 aa) fasta scores: E(): 0%2C72.2%25 id in 551 aa gene gene2232 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2254 YPO2255 YPO2255 araF araF 2533857 2534840 + L-arabinose-binding periplasmic protein precursor Similar to Escherichia coli L-arabinose-binding periplasmic protein precursor AraF SW:ARAF_ECOLI (P02924) (329 aa) fasta scores: E(): 0%2C 87.1%25 id in 326 aa%2C and to Haemophilus influenzae D-galactose-binding periplasmic protein precursor MglB SW:DGAL_HAEIN (P44883) (331 aa) fasta scores: E(): 3.5e-06%2C 26.5%25 id in 306 aa gene gene2233 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2255 YPO2256 YPO2256 araG araG 2534971 2536509 + L-arabinose transport ATP-binding protein Similar to Escherichia coli L-arabinose transport ATP-binding protein AraG SW:ARAG_ECOLI (P08531) (504 aa) fasta scores: E(): 0%2C 77.9%25 id in 503 aa%2C and to Streptomyces coelicolor ABC transporter protein%2C ATP binding component SCC57a.17 TR:Q9RDI1 (EMBL:AL136519) (517 aa) fasta scores: E(): 0%2C 43.3%25 id in 497 aa gene gene2234 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2256 YPO2257 YPO2257 araH araH 2536527 2537576 + L-arabinose transport system permease protein Similar to Escherichia coli L-arabinose transport system permease protein AraH SW:ARAH_ECOLI (P08532) (329 aa) fasta scores: E(): 0%2C 90.3%25 id in 319 aa%2C and to Vibrio cholerae ribose ABC transporter%2C permease protein VCA0129 TR:Q9KN36 (EMBL:AE004354) (332 aa) fasta scores: E(): 0%2C38.7%25 id in 313 aa gene gene2235 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2257 YPO2258 YPO2258 araC araC 2537797 2538729 + arabinose operon regulatory protein Similar to Erwinia chrysanthemi arabinose operon regulatory protein AraC SW:ARAC_ERWCH (P07642) (310 aa) fasta scores: E(): 0%2C 85.3%25 id in 300 aa%2C and to Escherichia coli arabinose operon regulatory protein AraC SW:ARAC_ECOLI (P03021) (292 aa) fasta scores: E(): 0%2C 58.3%25 id in 278 aa gene gene2236 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2258 YPO2259 YPO2259 YPO2259 2538857 2539906 + putative oxidoreductase Similar to Escherichia coli hypothetical oxidoreductase YdgJ SW:YDGJ_ECOLI (P77376) (346 aa) fasta scores: E(): 0%2C 71.7%25 id in 343 aa%2C and to Vibrio cholerae GFO/IDH/MocA family oxidoreductase VCA0099 TR:Q9KN66 (EMBL:AE004352) (346 aa) fasta scores: E(): 0%2C 48.7%25 id in 345 aa gene gene2237 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2259 YPO2260 YPO2260 YPO2260 2540100 2541128 + putative membrane protein Similar to Escherichia coli hypothetical protein YfeH SW:YFEH_ECOLI (P39836) (332 aa) fasta scores: E(): 0%2C65.7%25 id in 321 aa%2C and to Pseudomonas aeruginosa hypothetical protein PA2026 TR:AAG05414 (EMBL:AE004629) (333 aa) fasta scores: E(): 0%2C 57.0%25 id in 330 aa gene gene2238 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2260 YPO2261 YPO2261 YPO2261 2541334 2541933 + hypothetical protein No significant database hits gene gene2239 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2261 YPO2262 YPO2262 YPO2262 2541982 2543526 - putative exported protein Similar to Escherichia coli hypothetical protein YdgA SW:YDGA_ECOLI (P77804) (502 aa) fasta scores: E(): 0%2C42.6%25 id in 491 aa%2C and to Escherichia coli hypothetical protein YihF SW:YIHF_ECOLI (P32128) (490 aa) fasta scores: E(): 0%2C 28.0%25 id in 489 aa gene gene2240 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2262 YPO2263 YPO2263 manA manA 2543766 2544941 - mannose-6-phosphate isomerase Similar to Escherichia coli mannose-6-phosphate isomerase ManA SW:MANA_ECOLI (P00946) (391 aa) fasta scores: E(): 0%2C 71.0%25 id in 389 aa%2C and to Salmonella typhimurium mannose-6-phosphate isomerase ManA SW:MANA_SALTY (P25081) (391 aa) fasta scores: E(): 0%2C 70.2%25 id in 389 aa gene gene2241 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2263 YPO2264 YPO2264 fumC fumC 2545225 2546622 + fumarate hydratase%2C class II Similar to class II fumarate hydratases%2C e.g. Escherichia coli fumarate hydratase class II FumC SW:FUMC_ECOLI (P05042) (467 aa) fasta scores: E(): 0%2C 82.8%25 id in 464 aa%2C and to Rhizopus oryzae fumarate hydratase FumR SW:FUMH_RHIOR (P55250) (494 aa) fasta scores: E(): 0%2C61.3%25 id in 460 aa gene gene2242 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2264 YPO2265 YPO2265 tau tau 2546702 2547637 - DNA replication terminus site-binding protein Previously sequenced as Yersinia pestis DNA replication terminus site-binding protein Tus TR:Q9L6X9 (EMBL:AF231032) and similar to Escherichia coli DNA replication terminus site-binding protein Tus SW:TUS_ECOLI (P16525) (309 aa) fasta scores: E(): 0%2C 53.4%25 id in 307 aa gene gene2243 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2265 YPO2266 YPO2266 YPO2266 2548022 2549140 - putative membrane protein Similar to Escherichia coli hypothetical transport protein YnfM SW:YNFM_ECOLI (P43531) (417 aa) fasta scores: E(): 0%2C 66.3%25 id in 365 aa%2C and to Pseudomonas aeruginosa probable Mfs transporter pa5030 TR:AAG08415 (EMBL:AE004916) (438 aa) fasta scores: E(): 0%2C 61.7%25 id in 334 aa gene gene2244 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2266 YPO2267 YPO2267 YPO2267 2549353 2550236 + LysR-family transcriptional regulatory protein (pseudogene) Similar to Bacillus subtilis als operon regulatory protein AlsR SW:ALSR_BACSU (Q04778) (302 aa) fasta scores: E(): 1.7e-36%2C 39.519%25 id in 291 aa%2C and to Escherichia coli hypothetical transcriptional regulator YnfL SW:YNFL_ECOLI (P77559) (297 aa) fasta scores: E(): 3.7e-63%2C 57.627%25 id in 295 aa. Contains a frameshift after codon 51 pseudogene gene2245 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2267 YPO2268 YPO2268 mlc mlc 2550453 2551670 + putative ROK family transcriptional regulatory protein Similar to Escherichia coli putative NAGC-like transcriptional regulator Mlc SW:MLC_ECOLI (P50456) (406 aa) fasta scores: E(): 0%2C 73.4%25 id in 406 aa%2C and to Vibrio cholerae ROK family transcriptional regulator VC2007 TR:Q9KQJ1 (EMBL:AE004275) (405 aa) fasta scores: E(): 0%2C48.0%25 id in 402 aa gene gene2246 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2268 YPO2269 YPO2269 bioD bioD 2551894 2552562 + putative dethiobiotin synthetase Similar to Escherichia coli putative dethiobiotin synthetase YnfK SW:BID2_ECOLI (P77201) (231 aa) fasta scores: E(): 0%2C 63.2%25 id in 223 aa%2C to Escherichia coli dethiobiotin synthetase BioD SW:BIOD_ECOLI (P13000) (224 aa) fasta scores: E(): 0%2C 52.1%25 id in 219 aa and to Yersinia pestis YPO1154 (240 aa) fasta scores: E(): 0%2C50.7%25 identity in 227 aa overlap gene gene2247 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2269 YPO2270 YPO2270 YPO2270 2552703 2553998 - putative membrane protein Similar to Escherichia coli hypothetical protein TR:P76175 (EMBL:AE000255) (438 aa) fasta scores: E(): 0%2C61.8%25 id in 434 aa%2C and to Vibrio cholerae hypothetical protein VCA0526 TR:Q9KM62 (EMBL:AE004383) (468 aa) fasta scores: E(): 5e-21%2C 28.1%25 id in 420 aa gene gene2248 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2270 YPO2271 YPO2271 YPO2271 2554373 2554636 - phage hypothetical protein Similar to the C-terminal region of Pyrococcus horikoshii hypothetical protein PH1340 TR:O59065 (EMBL:AP000006) (120 aa) fasta scores: E(): 0.74%2C 30.7%25 id in 88 aa gene gene2249 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2271 YPO2272 YPO2272 YPO2272 2554658 2555065 - phage hypothetical protein No significant database matches gene gene2250 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2272 YPO2273 YPO2273 YPO2273 2555162 2555584 - phage hypothetical protein No significant database matches to the full length CDS. N-terminus is similar to an internal region of Vibrio cholerae pTLC plasmid protein TlcR TR:O85209 (EMBL:AF052650) (122 aa) fasta scores: E(): 1.3e-07%2C42.683%25 id in 82 aa gene gene2251 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2273 YPO2274 YPO2274 YPO2274 2555780 2556832 + putative phage protein Similar to bacteriophage I2-2 gene II protein [contains: gene X protein] II and X SW:VG2_BPI22 (P15419) (344 aa) fasta scores: E(): 0%2C 58.1%25 id in 344 aa%2C and to Moraxella sp TA144 plasmid pTA144 Up putative rolling circle replication protein RepC TR:O69606 (EMBL:AJ224743) (336 aa) fasta scores: E(): 0%2C 37.0%25 id in 343 aa gene gene2252 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2274 YPO2275 YPO2275 YPO2275 2556844 2557161 + putative phage protein Similar to bacteriophage I2-2 helix-destabilizing protein V SW:VHED_BPI22 (P15417) (108 aa) fasta scores: E(): 8.5e-16%2C 43.0%25 id in 100 aa gene gene2253 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2275 YPO2276 YPO2276 YPO2276 2557164 2557415 + putative phage-related membrane protein No significant database matches gene gene2254 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2276 YPO2276a YPO2276a YPO2276a 2557412 2557684 + putative phage-related membrane protein No significant database matches gene gene2255 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2276a YPO2277 YPO2277 YPO2277 2557749 2559461 + phage hypothetical protein No significant database matches gene gene2256 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2277 YPO2278 YPO2278 YPO2278 2559474 2559761 + putative phage-related membrane protein Similar to Vibrio cholerae O139 fs1 phage hypothetical protein TR:O56838 (EMBL:D89074) (104 aa) fasta scores: E(): 0.52%2C 28.1%25 id in 96 aa gene gene2257 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2278 YPO2279 YPO2279 YPO2279 2559765 2560790 + putative phage-related membrane protein N-terminal region is similar to the N-terminus of bacteriophage phi-Lf protein I TR:O55247 (EMBL:AF018286) (440 aa) fasta scores: E(): 9.7e-15%2C 28.4%25 id in 306 aa gene gene2258 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2279 YPO2280 YPO2280 YPO2280 2560790 2562034 + putative phage-related secreted protein Similar to internal region of Vibrio cholerae filamentous bacteriophage fs-2 hypothetical protein TR:O80264 (EMBL:AB002632) (500 aa) fasta scores: E(): 4e-10%2C 23.0%25 id in 369 aa gene gene2259 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2280 YPO2281 YPO2281 YPO2281 2562517 2562765 + phage hypothetical protein No significant database matches gene gene2260 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2281 YPO2282 YPO2282 YPO2282 2563093 2563203 - hypothetical protein No significant database hits gene gene2261 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2282 YPO2283 YPO2283 YPO2283 2563325 2564341 - putative LacI-family transcriptional regulatory protein Similar to Escherichia coli galactose operon repressor GalR SW:GALR_ECOLI (P03024) (343 aa) fasta scores: E(): 0%2C 44.1%25 id in 333 aa%2C and to Vibrio cholerae LacI family transcriptional regulator VC2337 TR:Q9KPM9 (EMBL:AE004303) (335 aa) fasta scores: E(): 0%2C 44.1%25 id in 333 aa gene gene2262 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2283 YPO2284 YPO2284 YPO2284 2564405 2564878 - hypothetical protein No significant database hits gene gene2263 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2284 YPO2285 YPO2285 YPO2285 2565022 2565645 - putative ribose-binding periplasmic protein (partial) Similar to the C-terminal regions of Escherichia coli D-ribose-binding periplasmic protein precursor RbsB SW:RBSB_ECOLI (P02925) (296 aa) fasta scores: E(): 7.4e-15%2C35.359%25 id in 181 aa%2C and Rhizobium loti ribose ABC transporter%2C periplasmic ribose-binding protein MLL7014 TR:BAB53199 (EMBL:AP003010) (313 aa) fasta scores: E(): 1e-34%2C 53.266%25 id in 199 aa. The CDS appears to be truncated at the N-terminus%2C identity with other proteins extends upstream of the start codon. Probable gene remnant%3B~was marked partial gene gene2264 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2285 YPO2286 YPO2286 YPO2286 2565808 2566839 + conserved hypothetical protein Similar to Deinococcus radiodurans putative ABC transporter%2C periplasmic substrate-binding protein DR1655 TR:Q9RTV1 (EMBL:AE002008) (337 aa) fasta scores: E(): 2e-09%2C 25.915%25 id in 328 aa%2C and to Escherichia coli putative aliphatic sulfonates binding protein precursor SsuA SW:SSUA_ECOLI (P75853) (319 aa) fasta scores: E(): 3.5e-07%2C 31.343%25 id in 201 aa gene gene2265 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2286 YPO2287 YPO2287 YPO2287 2566843 2567664 + putative transport system permease Similar to Escherichia coli taurine transport system permease protein TauC SW:TAUC_ECOLI (Q47539) (275 aa) fasta scores: E(): 9.6e-26%2C 33.1%25 id in 251 aa%2C and to Methanococcus jannaschii putative ABC transporter permease protein MJ0413 SW:Y413_METJA (Q57856) (267 aa) fasta scores: E(): 3.2e-30%2C 39.2%25 id in 268 aa gene gene2266 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2287 YPO2288 YPO2288 amn amn 2567955 2569595 - putative AMP nucleosidase Similar to Escherichia coli AMP nucleosidase Amn SW:AMN_ECOLI (P15272) (484 aa) fasta scores: E(): 0%2C 71.1%25 id in 491 aa%2C and to Pseudomonas aeruginosa AMP nucleosidase Amn TR:AAG07357 (EMBL:AE004815) (499 aa) fasta scores: E(): 0%2C 52.3%25 id in 465 aa gene gene2267 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2288 YPO2289 YPO2289 YPO2289 2569831 2571234 + putative virulence factor Similar to Salmonella typhimurium putative virulence factor SrfA TR:Q9KIK0 (EMBL:AF231758) (399 aa) fasta scores: E(): 8.5e-22%2C 40.0%25 id in 433 aa. Possible alternative translational start sites. SrfA has been shown to be regulated by the pathogenicity island SPI-2 transcriptional regulator SsrB%2C although it is not found within SPI-2 gene gene2268 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2289 YPO2290 YPO2290 YPO2290 2571239 2574310 + putative virulence factor Similar to Salmonella typhimurium putative virulence factor SrfB TR:Q9KIJ9 (EMBL:AF231758) (993 aa) fasta scores: E(): 0%2C 56.5%25 id in 1028 aa. High content of glutamine and proline amino acid residues between codons 697 and 728. SrfB has been shown to be regulated by the pathogenicity island SPI-2 transcriptional regulator SsrB%2Calthough it is not found within SPI-2 gene gene2269 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2290 YPO2291 YPO2291 YPO2291 2574307 2576847 + putative virulence factor Similar to Salmonella typhimurium putative virulence factor SrfC TR:Q9KIJ8 (EMBL:AF231758) (714 aa) fasta scores: E(): 8.2e-06%2C 29.6%25 id in 817 aa. SrfC has been shown to be regulated by the pathogenicity island SPI-2 transcriptional regulator SsrB%2C although it is not found within SPI-2 gene gene2270 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2291 YPO2292 YPO2292 YPO2292 2577016 2577810 - putative lipoprotein Similar to Vibrio cholerae hypothetical protein VC1330 TR:Q9KSC8 (EMBL:AE004213) (275 aa) fasta scores: E(): 0%2C 41.6%25 id in 262 aa%2C and to Pseudomonas syringae (pv. tomato) hypothetical protein TR:Q9L6W6 (EMBL:AF232004) (241 aa) fasta scores: E(): 0%2C 45.3%25 id in 234 aa gene gene2271 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2292 YPO2293 YPO2293 ilvB ilvB 2578383 2580065 + putative acetolactate synthase large subunit Similar to Escherichia coli acetolactate synthase isozyme I large subunit IlvB SW:ILVB_ECOLI (P08142) (562 aa) fasta scores: E(): 0%2C 69.7%25 id in 554 aa%2C and to Citrobacter freundii valine-sensitive acetohydroxy acid synthase TR:P94783 (EMBL:D89674) (561 aa) fasta scores: E(): 0%2C 68.5%25 id in 558 aa gene gene2272 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2293 YPO2294 YPO2294 ilvN ilvN 2580067 2580369 + putative acetolactate synthase small subunit Similar to Escherichia coli acetolactate synthase isozyme I small subunit IlvN SW:ILVN_ECOLI (P08143) (96 aa) fasta scores: E(): 5.6e-19%2C 61.4%25 id in 83 aa%2C and to Salmonella typhimurium acetolactate synthase isozyme III small subunit IlvH SW:ILVH_SALTY (P21622) (163 aa) fasta scores: E(): 5.8e-06%2C 36.8%25 id in 76 aa gene gene2273 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2294 YPO2295 YPO2295 YPO2295 2580436 2581110 - haloacid dehalogenase-like hydrolase family protein Similar to Vibrio cholerae hypothetical protein VCA0608 TR:Q9KLY3 (EMBL:AE004391) (224 aa) fasta scores: E(): 0%2C 62.9%25 id in 224 aa%3B~Similar to Vibrio cholerae hypothetical protein VCA0608 TR:Q9KLY3 (EMBL:AE004391) (224 aa) fasta scores: E(): 0%2C 62.9%25 id in 224 aa%2C and to Escherichia coli hypothetical protein YjjG SW:YJJG_ECOLI (P33999) (225 aa) fasta scores: E(): 0%2C 56.8%25 id in 222 aa gene gene2274 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2295 YPO2296 YPO2296 YPO2296 2581241 2582626 - hypothetical protein No significant database matches to the full length CDS. Internal regions of the CDS are weakly similar to Pseudomonas aeruginosa hypothetical protein PA2260 TR:AAG05648 (EMBL:AE004652) (260 aa) fasta scores: E(): 0.25%2C 27.2%25 id in 265 aa%2C and the N-terminal region of Mus musculus ETS family transcription factor Elf2 TR:Q9JHC8 (EMBL:AF256218) (521 aa) fasta scores: E(): 3.9%2C 23.2%25 id in 246 aa gene gene2275 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2296 YPO2297 YPO2297 YPO2297 2582626 2583636 - putative membrane protein No significant database hits gene gene2276 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2297 YPO2298 YPO2298 phoA phoA 2584182 2585627 - alkaline phosphatase precursor Similar to Serratia marcescens alkaline phosphatase precursor PhoA SW:PPB_SERMA (P19147) (475 aa) fasta scores: E(): 0%2C 77.1%25 id in 472 aa%2C and to Escherichia coli alkaline phosphatase PhoA TR:Q47487 (EMBL:M29668) (471 aa) fasta scores: E(): 0%2C 74.6%25 id in 468 aa. Contains a 2x SGIALS repeat between codons 18 and 29. gene gene2277 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2298 YPO2299 YPO2299 ogt ogt 2585868 2586386 + putative methylated-DNA--protein-cysteine methyltransferase Similar to Escherichia coli methylated-DNA--protein-cysteine methyltransferase Ogt SW:OGT_ECOLI (P09168) (171 aa) fasta scores: E(): 0%2C 57.1%25 id in 170 aa%2C and to Salmonella typhimurium methylated-DNA--protein-cysteine methyltransferase Ogt SW:OGT_SALTY (P37429) (171 aa) fasta scores: E(): 0%2C 57.6%25 id in 170 aa gene gene2278 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2299 YPO2300 YPO2300 fnr fnr 2586459 2587211 + fumarate and nitrate reduction regulatory protein Similar to Escherichia coli fumarate and nitrate reduction regulatory protein Fnr SW:FNR_ECOLI (P03019) (250 aa) fasta scores: E(): 0%2C 92.7%25 id in 247 aa%2C and to Shigella dysenteriae fumarate and nitrate reduction regulatory protein Fnr TR:Q9LA24 (EMBL:AF153317) (264 aa) fasta scores: E(): 0%2C 92.7%25 id in 247 aa gene gene2279 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2300 YPO2301 YPO2301 YPO2301 2587346 2588302 + putative stress protein Similar to Escherichia coli hypothetical protein YdaA SW:YDAA_ECOLI (P03807) (315 aa) fasta scores: E(): 0%2C77.3%25 id in 313 aa%2C and to Vibrio cholerae hypothetical protein VC1433 vc1433 TR:Q9KS28 (EMBL:AE004222) (315 aa) fasta scores: E(): 0%2C 55.6%25 id in 311 aa%3B~Similar to Escherichia coli protein YdaA SW:YDAA_ECOLI (P03807) (315 aa) fasta scores: E(): 0%2C 77.3%25 id in 313 aa gene gene2280 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2301 YPO2302 YPO2302 pntB pntB 2588577 2589971 - NAD(P) transhydrogenase subunit beta Similar to Escherichia coli NAD(P) transhydrogenase beta subunit protein PntB SW:PNTB_ECOLI (P07002) (462 aa) fasta scores: E(): 0%2C 85.9%25 id in 462 aa%2C and to Vibrio cholerae NAD(P) transhydrogenase%2C beta subunit protein VCA0564 TR:Q9KM25 (EMBL:AE004387) (458 aa) fasta scores: E(): 0%2C 77.1%25 id in 462 aa gene gene2281 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2302 YPO2303 YPO2303 pntA pntA 2590044 2591570 - NAD(P) transhydrogenase alpha subunit Similar to Escherichia coli NAD(P) transhydrogenase alpha subunit protein PntA SW:PNTA_ECOLI (P07001) (510 aa) fasta scores: E(): 0%2C 85.5%25 id in 510 aa%2C and to Vibrio cholerae NAD(P) transhydrogenase alpha subunit protein VCA0563 TR:Q9KM26 (EMBL:AE004387) (512 aa) fasta scores: E(): 0%2C 75.6%25 id in 512 aa gene gene2282 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2303 YPO2304 YPO2304 YPO2304 2591691 2591894 - hypothetical protein No significant database hits gene gene2283 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2304 YPO2305 YPO2305 YPO2305 2592100 2593053 + putative exported protein Similar to Escherichia coli hypothetical protein YdgH SW:YDGH_ECOLI (P76177) (314 aa) fasta scores: E(): 0%2C70.0%25 id in 317 aa%2C and to Borrelia hermsii outer membrane lipoprotein 10 Vmp10 TR:P70900 (EMBL:U52037) (366 aa) fasta scores: E(): 1.3%2C 23.6%25 id in 292 aa gene gene2284 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2305 YPO2306 YPO2306 YPO2306 2593323 2594714 + putative amino acid antiporter Similar to Pseudomonas aeruginosa arginine/ornithine antiporter ArcD SW:ARCD_PSEAE (P18275) (482 aa) fasta scores: E(): 0%2C 44.3%25 id in 476 aa%2C and to Escherichia coli putative arginine/ornithine antiporter YdgI SW:ARCD_ECOLI (P77429) (460 aa) fasta scores: E(): 0%2C 74.9%25 id in 462 aa gene gene2285 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2306 YPO2307 YPO2307 YPO2307 2594738 2595154 - conserved hypothetical protein Similar to Vibrio cholerae hypothetical protein VC1189 TR:Q9KSR7 (EMBL:AE004199) (140 aa) fasta scores: E(): 2.2e-16%2C 41.7%25 id in 127 aa gene gene2286 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2307 YPO2308 YPO2308 rstA rstA 2595451 2596197 + two-component regulatory system%2C response regulator protein Similar to Escherichia coli transcriptional regulatory protein RstA SW:RSTA_ECOLI (P52108) (242 aa) fasta scores: E(): 0%2C 73.9%25 id in 245 aa%2C and to Bacillus subtilis alkaline phosphatase synthesis transcriptional regulatory protein PhoP SW:PHOP_BACSU (P13792) (240 aa) fasta scores: E(): 1.3e-20%2C 33.5%25 id in 239 aa gene gene2287 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2308 YPO2309 YPO2309 rstB rstB 2596225 2597502 + two-component regulatory system%2C sensor kinase protein Similar to Escherichia coli sensor protein RstB SW:RSTB_ECOLI (P18392) (433 aa) fasta scores: E(): 0%2C 69.5%25 id in 419 aa%2C and to Escherichia coli sensor protein CpxA SW:CPXA_ECOLI (P08336) (457 aa) fasta scores: E(): 2.5e-27%2C28.4%25 id in 450 aa gene gene2288 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2309 YPO2310 YPO2310 YPO2310 2597596 2599095 + putative carboxypeptidase Similar to Vibrio cholerae thermostable carboxypeptidase 1 VC1414 TR:Q9KS46 (EMBL:AE004220) (524 aa) fasta scores: E(): 0%2C 55.5%25 id in 499 aa%2C and to Halobacterium sp probable carboxypeptidase Cxp TR:AAG20654 (EMBL:AE005134) (502 aa) fasta scores: E(): 0%2C 35.9%25 id in 499 aa gene gene2289 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2310 YPO2311 YPO2311 tnp tnp 2599217 2599675 - transposase for the IS1541 insertion element Similar to Salmonella typhimurium and Salmonella typhi transposase for insertion sequence IS200%2C TnpA SW:TNPA_SALTY (Q57334) (152 aa) fasta scores: E(): 0%2C 93.4%25 id in 152 aa. Almost identical to the Yersinia pseudotuberculosis IS1541-like element transposase Tnp TR:Q9X9F5 (EMBL:AJ238014) (152 aa) fasta scores: E(): 0%2C99.3%25 id in 152 aa gene gene2290 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2311 YPO2312 YPO2312 YPO2312 2600645 2603269 + putative insecticidal toxin complex Similar to Photorhabdus luminescens insecticidal toxin complex protein TccC TR:O85157 (EMBL:AF047028) (1043 aa) fasta scores: E(): 0%2C 60.4%25 id in 695 aa%2C and to Serratia entomophila plasmid pADAP virulence determinant SepC TR:AAG09644 (EMBL:AF135182) (973 aa) fasta scores: E(): 0%2C 62.2%25 id in 875 aa. Similar to YPO2380 (984 aa) fasta scores: E(): 0%2C 64.9%25 identity in 880 aa overlap%2CYPO3674 (1011 aa) fasta scores: E(): 0%2C 50.1%25 identity in 773 aa overlap%2C and to YPO3673 (952 aa) fasta scores: E(): 0%2C 52.1%25 identity in 729 aa overlap. Note the differing C-terminus of the product of this CDS and the G+C content -56%25 gene gene2291 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2312 YPO2313 YPO2313 YPO2313 2603272 2603628 + hypothetical protein No significant database hits gene gene2292 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2313 YPO2314 YPO2314 YPO2314 2603735 2603941 - putative invertase protein (partial) Similar to the N-terminal regions of Acinetobacter sp SE19 pilin gene inverting protein ChnY TR:Q9F7E1 (EMBL:AF282240) (324 aa) fasta scores: E(): 7.1e-06%2C38.806%25 id in 67 aa%2C and Neisseria meningitidis pilin gene inverting protein PivNM-2 TR:Q9JY46 (EMBL:AE002525) (316 aa) fasta scores: E(): 0.00013%2C 43.077%25 id in 65 aa. The CDS appears to be truncated at the C- and N-termini. Identity with other proteins extends upstream of the first available start codon%2C codon 18. Probable gene remnant%3B~was marked partial gene gene2293 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2314 YPO2315 YPO2315 YPO2315 2604455 2605033 - putative exported protein Similar to Escherichia coli hypothetical protein YceI SW:YCEI_ECOLI (P37904) (191 aa) fasta scores: E(): 0%2C78.5%25 id in 191 aa%2C and to Pseudomonas aeruginosa hypothetical protein PA0423 TR:AAG03812 (EMBL:AE004479) (191 aa) fasta scores: E(): 0%2C 77.4%25 id in 190 aa gene gene2294 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2315 YPO2316 YPO2316 YPO2316 2605059 2605613 - putative membrane protein Similar to Escherichia coli cytochrome b561 homologue 2 YceJ SW:C56I_ECOLI (P75925) (188 aa) fasta scores: E(): 0%2C 62.6%25 id in 182 aa%2C and to Pseudomonas aeruginosa hypothetical protein PA0422 TR:AAG03811 (EMBL:AE004479) (189 aa) fasta scores: E(): 0%2C 59.3%25 id in 182 aa gene gene2295 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2316 YPO2317 YPO2317 YPO2317 2606008 2606220 + hypothetical protein No significant database hits. Doubtful CDS gene gene2296 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2317 YPO2318 YPO2318 asr asr 2606217 2606501 + putative acid shock protein Similar to Escherichia coli acid shock protein Asr SW:ASR_ECOLI (P36560) (111 aa) fasta scores: E(): 3.5e-08%2C50.0%25 id in 106 aa gene gene2297 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2318 YPO2319 YPO2319 YPO2319 2606835 2607671 + putative pepetidase Similar to Escherichia coli putative protease YdgD TR:P76176 (EMBL:AE000255) (273 aa) fasta scores: E(): 0%2C62.4%25 id in 263 aa%2C and to the N-terminus of Homo sapiens chymotrypsin-like protease CTRL-1 SW:CTRL_HUMAN (P40313) (264 aa) fasta scores: E(): 0.00027%2C 23.1%25 id in 242 aa gene gene2298 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2319 YPO2320 YPO2320 YPO2320 2607727 2608050 - putative DNA-binding phage-related protein Similar to bacteriophage N15 protein gp48 TR:O64356 (EMBL:AF064539) (95 aa) fasta scores: E(): 9.5e-06%2C 37.3%25 id in 83 aa gene gene2299 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2320 YPO2321 YPO2321 YPO2321 2608047 2608361 - putative phage protein Similar to bacteriophage N15 protein gp49 TR:O64357 (EMBL:AF064539) (103 aa) fasta scores: E(): 6.3e-08%2C 36.2%25 id in 94 aa gene gene2300 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2321 YPO2322 YPO2322 hrpA hrpA 2608715 2612557 - ATP-dependent helicase Similar to Escherichia coli ATP-dependent helicase HrpA SW:HRPA_ECOLI (P43329) (1281 aa) fasta scores: E(): 0%2C81.9%25 id in 1280 aa%2C and to Vibrio cholerae ATP-dependent helicase HrpA TR:Q9KS77 (EMBL:AE004217) (1309 aa) fasta scores: E(): 0%2C 70.7%25 id in 1278 aa gene gene2301 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2322 YPO2323 YPO2323 acpD acpD 2613025 2613630 + acyl carrier protein phosphodiesterase Similar to Escherichia coli acyl carrier protein phosphodiesterase AcpD SW:ACPD_ECOLI (P41407) (200 aa) fasta scores: E(): 0%2C 81.0%25 id in 200 aa%2C and to Haemophilus influenzae acyl carrier protein phosphodiesterase AcpD SW:ACPD_HAEIN (P43013) (194 aa) fasta scores: E(): 0%2C 52.2%25 id in 201 aa gene gene2302 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2323 YPO2324 YPO2324 YPO2324 2613751 2614707 - putative transcriptional regulatory protein Similar to Klebsiella pneumoniae repressor DalR TR:O52721 (EMBL:AF045245) (313 aa) fasta scores: E(): 0%2C44.9%25 id in 312 aa%2C and to Bacillus subtilis deoxyribonucleoside regulator DeoR SW:DEOR_BACSU (P39140) (313 aa) fasta scores: E(): 2.9e-17%2C 26.6%25 id in 316 aa gene gene2303 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2324 YPO2325 YPO2325 dalD dalD 2614917 2616308 + putative mannitol dehydrogenase Similar to Klebsiella pneumoniae D-arabinitol dehydrogenase DalD TR:O52720 (EMBL:AF045245) (455 aa) fasta scores: E(): 0%2C 64.4%25 id in 449 aa%2C and to Rhodobacter sphaeroides mannitol 2-dehydrogenase MtlK SW:MTLK_RHOSH (P33216) (476 aa) fasta scores: E(): 0%2C 34.0%25 id in 438 aa gene gene2304 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2325 YPO2326 YPO2326 YPO2326 2616509 2616880 - putative exported protein Similar to Escherichia coli hypothetical protein YdbL SW:YDBL_ECOLI (P76076) (108 aa) fasta scores: E(): 3.5e-17%2C 52.9%25 id in 104 aa gene gene2305 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2326 YPO2327 YPO2327 YPO2327 2616890 2617075 - putative lipoprotein Similar to Escherichia coli hypothetical protein YnbE SW:YNBE_ECOLI (P76075) (61 aa) fasta scores: E(): 1.7e-10%2C 66.0%25 id in 50 aa%2C and to Pseudomonas aeruginosa hypothetical protein PA5306 TR:AAG08691 (EMBL:AE004943) (63 aa) fasta scores: E(): 2.3e-06%2C 44.4%25 id in 54 aa gene gene2306 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2327 YPO2328 YPO2328 YPO2328 2617081 2619777 - putative membrane protein Similar to Escherichia coli hypothetical protein YdbH SW:YDBH_ECOLI (P52645) (879 aa) fasta scores: E(): 0%2C46.9%25 id in 870 aa gene gene2307 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2328 YPO2329 YPO2329 hslI hslI 2620043 2621035 + D-lactate dehydrogenase Similar to Escherichia coli D-lactate dehydrogenase LdhA SW:LDHD_ECOLI (P52643) (329 aa) fasta scores: E(): 0%2C81.3%25 id in 326 aa%2C and to Haemophilus influenzae 2-hydroxyacid dehydrogenase homologue Ddh SW:DDH_HAEIN (P44501) (331 aa) fasta scores: E(): 0%2C 72.6%25 id in 328 aa gene gene2308 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2329 YPO2330 YPO2330 hslJ hslJ 2621105 2621557 + putative heat shock protein Similar to Escherichia coli heat shock protein HslJ SW:HSLJ_ECOLI (P52644) (140 aa) fasta scores: E(): 3.3e-19%2C45.8%25 id in 153 aa%2C and to Vibrio cholerae heat shock protein HslJ TR:Q9KRH9 (EMBL:AE004244) (147 aa) fasta scores: E(): 3.3e-11%2C 36.1%25 id in 122 aa gene gene2309 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2330 YPO2331 YPO2331 YPO2331 2621615 2621956 - putative lipoprotein C-terminal region is similar to the C-termini of Escherichia coli hypothetical protein YdbJ SW:YDBJ_ECOLI (P52646) (51 aa) fasta scores: E(): 1.2e-08%2C 50.0%25 id in 70 aa%2C and the full length Escherichia coli hypothetical protein YoaF SW:YOAF_ECOLI (P76244) (84 aa) fasta scores: E(): 0.65%2C 37.3%25 id in 51 aa gene gene2310 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2331 YPO2332 YPO2332 YPO2332 2622241 2622900 + putative membrane protein Similar to Escherichia coli hypothetical 23.2 kDa protein in slp-hdeB intergenic region YhiD SW:YHID_ECOLI (P26606) (215 aa) fasta scores: E(): 0%2C 46.5%25 id in 213 aa%3B~Similar to Escherichia coli hypothetical protein YhiD SW:YHID_ECOLI (P26606) (215 aa) fasta scores: E(): 0%2C46.5%25 id in 213 aa%2C and to Treponema pallidum Mg2+ transport protein TP0774 TR:O83753 (EMBL:AE001249) (224 aa) fasta scores: E(): 5.9e-19%2C 35.4%25 id in 223 aa gene gene2311 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2332 YPO2333 YPO2333 qacE qacE 2622960 2623298 - quaternary ammonium compound-resistance protein Similar to Escherichia coli%2C and Klebsiella aerogenes quaternary ammonium compound-resistance protein QacE SW:QACE_ECOLI (Q57225) (110 aa) fasta scores: E(): 1.5e-21%2C 54.5%25 id in 110 aa gene gene2312 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2333 YPO2334 YPO2334 nifJ nifJ 2623771 2627304 + putative pyruvate-flavodoxin oxidoreductase Similar to Escherichia coli probable pyruvate-flavodoxin oxidoreductase YdbK SW:NIFJ_ECOLI (P52647) (1174 aa) fasta scores: E(): 0%2C 80.5%25 id in 1177 aa%2C and to Klebsiella pneumoniae pyruvate-flavodoxin oxidoreductase NifJ SW:NIFJ_KLEPN (P03833) (1171 aa) fasta scores: E(): 0%2C 48.0%25 id in 1184 aa gene gene2313 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2334 YPO2335 YPO2335 YPO2335 2627579 2628520 + conserved hypothetical protein Similar to Escherichia coli hypothetical protein YdaO SW:YDAO_ECOLI (P76055) (311 aa) fasta scores: E(): 0%2C82.7%25 id in 313 aa%2C and to Vibrio cholerae hypothetical protein VC1432 vc1432 TR:Q9KS29 (EMBL:AE004222) (310 aa) fasta scores: E(): 0%2C 72.8%25 id in 312 aa gene gene2314 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2335 YPO2336 YPO2336 YPO2336 2628791 2629795 + putative exported protein Similar to Deinococcus radiodurans putative lipase/esterase DR0133 TR:Q9RY19 (EMBL:AE001876) (296 aa) fasta scores: E(): 1.7e-10%2C 29.1%25 id in 320 aa%2C and to Acetobacter pasteurianus putative arylesterase Est1 TR:O66374 (EMBL:AB012140) (317 aa) fasta scores: E(): 8.5e-07%2C 25.4%25 id in 284 aa gene gene2315 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2336 YPO2337 YPO2337 YPO2337 2630107 2630946 + putative regulatory protein Similar to Clostridium difficile transcriptional activator TR:AAG15273 (EMBL:AF093568) (272 aa) fasta scores: E(): 0.00036%2C 21.8%25 id in 239 aa. N-terminal region is similar to Rhizobium meliloti heavy metal dependent transcription regulator HmrR SW:HMRR_RHIME (Q9X5X4) (147 aa) fasta scores: E(): 0.099%2C 28.0%25 id in 125 aa gene gene2316 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2337 YPO2338 YPO2338 YPO2338 2631320 2632303 - CorA-like Mg2+ transporter protein Similar to Escherichia coli hypothetical protein TR:P76054 (EMBL:AE000232) (327 aa) fasta scores: E(): 0%2C64.5%25 id in 327 aa%2C and to Pseudomonas aeruginosa putative cytoplasmic membrane-associated protein CmaX TR:Q9ZIH2 (EMBL:AF027290) (332 aa) fasta scores: E(): 0%2C 34.5%25 id in 322 aa gene gene2317 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2338 YPO2339 YPO2339 mppA mppA 2632546 2634162 - putative periplasmic murein peptide-binding protein Similar to Escherichia coli periplasmic murein peptide-binding protein precursor MppA SW:MPPA_ECOLI (P77348) (537 aa) fasta scores: E(): 0%2C 70.6%25 id in 537 aa%2Cand to Vibrio cholerae oligopeptide ABC transporter%2Cperiplasmic oligopeptide-binding protein VC1091 TR:Q9KT14 (EMBL:AE004190) (543 aa) fasta scores: E(): 0%2C 48.5%25 id in 532 aa gene gene2318 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2339 YPO2340 YPO2340 YPO2340 2634540 2635310 + conserved hypothetical protein Similar to Shigella dysenteriae hypothetical protein YcjI TR:Q9LA26 (EMBL:AF153317) (262 aa) fasta scores: E(): 0%2C 70.6%25 id in 231 aa%2C and to Escherichia coli hypothetical protein YcjI SW:YCJI_ECOLI (P51983) (262 aa) fasta scores: E(): 0%2C 70.6%25 id in 231 aa gene gene2319 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2340 YPO2341 YPO2341 YPO2341 2635352 2636326 - putative mandelate racemase / muconate lactonizing protein Weak similarity to Pseudomonas putida muconate cycloisomerase I CatB SW:CATB_PSEPU (P08310) (374 aa) fasta scores: E(): 7.5e-07%2C 25.2%25 id in 318 aa. Similar to Escherichia coli hypothetical protein YcjG SW:YCJG_ECOLI (P51981) (321 aa) fasta scores: E(): 0%2C 67.9%25 id in 321 aa gene gene2320 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2341 YPO2342 YPO2342 tpx tpx 2636489 2636992 + thiol peroxidase Similar to Escherichia coli thiol peroxidase Tpx SW:TPX_ECOLI (P37901) (167 aa) fasta scores: E(): 0%2C 79.5%25 id in 166 aa%2C and to Shigella dysenteriae thiol peroxidase Tpx SW:TPX_SHIDY (P57669) (167 aa) fasta scores: E(): 0%2C79.5%25 id in 166 aa gene gene2321 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2342 YPO2343 YPO2343 tnp tnp 2637245 2637703 + transposase for the IS1541 insertion element Similar to Salmonella typhimurium%2C and Salmonella typhi transposase for insertion sequence IS200 TnpA SW:T200_SALTY (Q57334) (152 aa) fasta scores: E(): 0%2C 94.1%25 id in 152 aa. Identical to the Yersinia pseudotuberculosis IS1541-like element transposase Tnp TR:Q9X9F5 (EMBL:AJ238014) (152 aa) fasta scores: E(): 0%2C 100.0%25 id in 152 aa gene gene2322 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2343 YPO2344 YPO2344 tyrR tyrR 2637850 2639427 - transcriptional regulatory protein Similar to Escherichia coli transcriptional regulatory protein TyrR SW:TYRR_ECOLI (P07604) (513 aa) fasta scores: E(): 0%2C 70.8%25 id in 517 aa%2C and to Erwinia herbicola transcriptional regulatory protein TyrR SW:TYRR_ERWHE (Q9ZIB7) (521 aa) fasta scores: E(): 0%2C 74.3%25 id in 517 aa gene gene2323 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2344 YPO2345 YPO2345 YPO2345 2639762 2640208 + conserved hypothetical protein Similar to Yersinia enterocolitica hypothetical protein TR:AAG22120 (EMBL:AY008264) (148 aa) fasta scores: E(): 0%2C 93.9%25 id in 148 aa gene gene2324 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2345 YPO2346 YPO2346 YPO2346 2640270 2640728 + conserved hypothetical protein Similar to Yersinia enterocolitica hypothetical protein TR:AAG22119 (EMBL:AY008264) (152 aa) fasta scores: E(): 0%2C 86.2%25 id in 152 aa gene gene2325 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2346 YPO2347 YPO2347 YPO2347 2640738 2641799 - putative membrane protein Similar to Yersinia enterocolitica hypothetical protein YcjF TR:AAG22118 (EMBL:AY008264) (354 aa) fasta scores: E(): 0%2C 92.4%25 id in 353 aa%2C and to Escherichia coli hypothetical protein YcjF SW:YCJF_ECOLI (P45525) (353 aa) fasta scores: E(): 0%2C 74.1%25 id in 351 aa gene gene2326 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2347 YPO2348 YPO2348 YPO2348 2641796 2643193 - conserved hypothetical protein Similar to Yersinia enterocolitica hypothetical protein YcjX TR:AAG22117 (EMBL:AY008264) (465 aa) fasta scores: E(): 0%2C 95.5%25 id in 465 aa%2C and to Escherichia coli hypothetical protein YcjX SW:YCJX_ECOLI (P76046) (465 aa) fasta scores: E(): 0%2C 80.6%25 id in 465 aa gene gene2327 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2348 YPO2349 YPO2349 pspC pspC 2643501 2643860 - phage shock protein C Similar to Yersinia enterocolitica phage shock protein C PspC TR:AAG22115 (EMBL:AY008264) (139 aa) fasta scores: E(): 0%2C 77.8%25 id in 117 aa%2C and to Escherichia coli phage shock protein C PspC SW:PSPC_ECOLI (P23855) (119 aa) fasta scores: E(): 2e-24%2C 54.6%25 id in 119 aa gene gene2328 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2349 YPO2350 YPO2350 pspB pspB 2643860 2644087 - phage shock protein B Similar to Yersinia enterocolitica phage shock protein B PspB TR:AAG22114 (EMBL:AY008264) (75 aa) fasta scores: E(): 2.2e-26%2C 90.7%25 id in 75 aa%2C and to Escherichia coli phage shock protein B PspB SW:PSPB_ECOLI (P23854) (74 aa) fasta scores: E(): 8.8e-18%2C 69.9%25 id in 73 aa gene gene2329 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2350 YPO2351 YPO2351 pspA pspA 2644249 2644914 - phage shock protein A Similar to Yersinia enterocolitica phage shock protein A PspA TR:AAG22113 (EMBL:AY008264) (221 aa) fasta scores: E(): 0%2C 92.3%25 id in 221 aa%2C and to Escherichia coli phage shock protein A PspA SW:PSPA_ECOLI (P23853) (221 aa) fasta scores: E(): 0%2C 79.7%25 id in 217 aa gene gene2330 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2351 YPO2352 YPO2352 pspF pspF 2645159 2646187 + psp operon transcriptional activator Similar to Escherichia coli phage shock protein (psp) operon transcriptional activator PspF SW:PSPF_ECOLI (P37344) (325 aa) fasta scores: E(): 0%2C 73.3%25 id in 329 aa%2Cand to Yersinia enterocolitica transcriptional activator%2Cphage shock protein F%2C PspF TR:AAG22112 (EMBL:AY008264) (339 aa) fasta scores: E(): 0%2C 85.5%25 id in 339 aa gene gene2331 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2352 YPO2353 YPO2353 tnp tnp 2646352 2646810 - transposase for the IS1541 insertion element Similar to Salmonella typhimurium and Salmonella typhi transposase for insertion sequence IS200%2C TnpA%2CSW:TNPA_SALTY (Q57334) (152 aa) fasta scores: E(): 0%2C 93.4%25 id in 152 aa. Almost identical to the Yersinia pseudotuberculosis IS1541-like element transposase Tnp TR:Q9X9F5 (EMBL:AJ238014) (152 aa) fasta scores: E(): 0%2C99.3%25 id in 152 aa gene gene2332 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2353 YPO2354 YPO2354 YPO2354 2647154 2647339 + hypothetical protein No significant database hits gene gene2333 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2354 YPO2355 YPO2355 sapA sapA 2647475 2649121 + peptide transport periplasmic protein precursor Similar to Escherichia coli peptide transport periplasmic protein SapA SW:SAPA_ECOLI (Q47622) (547 aa) fasta scores: E(): 0%2C 76.1%25 id in 545 aa%2C and to Erwinia chrysanthemi antimicrobial peptides resistance protein SapA TR:O86187 (EMBL:AJ222649) (539 aa) fasta scores: E(): 0%2C76.0%25 id in 537 aa gene gene2334 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2355 YPO2356 YPO2356 sapB sapB 2649118 2650083 + peptide transport system permease protein Similar to Escherichia coli peptide transport system permease protein SapB SW:SAPB_ECOLI (Q47623) (321 aa) fasta scores: E(): 0%2C 76.9%25 id in 321 aa%2C and to Salmonella typhimurium peptide transport system permease protein SapB SW:SAPB_SALTY (P36668) (321 aa) fasta scores: E(): 0%2C 76.9%25 id in 321 aa gene gene2335 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2356 YPO2357 YPO2357 sapC sapC 2650070 2650960 + peptide transport system permease protein Similar to Escherichia coli peptide transport system permease protein SapC SW:SAPC_ECOLI (Q47624) (296 aa) fasta scores: E(): 0%2C 77.0%25 id in 296 aa%2C and to Salmonella typhimurium peptide transport system permease protein SapC SW:SAPC_SALTY (P36669) (296 aa) fasta scores: E(): 0%2C 77.7%25 id in 296 aa gene gene2336 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2357 YPO2358 YPO2358 sapD sapD 2650960 2651952 + peptide transport system ATP-binding protein Similar to Erwinia chrysanthemi antimicrobial peptides resistance protein SapD TR:O86190 (EMBL:AJ222649) (329 aa) fasta scores: E(): 0%2C 83.2%25 id in 327 aa%2C and to Salmonella typhimurium peptide transport system ATP-binding protein SapD SW:SAPD_SALTY (P36636) (330 aa) fasta scores: E(): 0%2C 81.2%25 id in 330 aa gene gene2337 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2358 YPO2359 YPO2359 sapF sapF 2651952 2652767 + peptide transport system ATP-binding protein Similar to Escherichia coli peptide transport system ATP-binding protein SapF SW:SAPF_ECOLI (P36637) (268 aa) fasta scores: E(): 0%2C 82.4%25 id in 267 aa%2C and to Salmonella typhimurium peptide transport system ATP-binding protein SapF SW:SAPF_SALTY (P36638) (268 aa) fasta scores: E(): 0%2C81.6%25 id in 267 aa gene gene2338 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2359 YPO2360 YPO2360 YPO2360 2653157 2654437 + conserved hypothetical protein No significant database matches to the full length CDS. C-terminal region is similar to the C-terminus of Escherichia coli hypothetical protein YciW SW:YCIW_ECOLI (P76035) (401 aa) fasta scores: E(): 0%2C 36.4%25 id in 365 aa gene gene2339 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2360 YPO2361 YPO2361 YPO2361 2655080 2656585 + putative proton dependent peptide transporter Similar to Escherichia coli hypothetical protein YdgR SW:YDGR_ECOLI (P77304) (500 aa) fasta scores: E(): 0%2C75.6%25 id in 487 aa%2C and to Vibrio cholerae proton/peptide symporter family protein VC0988 TR:Q9KTB5 (EMBL:AE004180) (514 aa) fasta scores: E(): 0%2C 58.9%25 id in 494 aa gene gene2340 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2361 YPO2362 YPO2362 YPO2362 2656840 2657430 + putative membrane protein Similar to Escherichia coli hypothetical protein YohC SW:YOHC_ECOLI (P33365) (195 aa) fasta scores: E(): 0%2C65.5%25 id in 194 aa%2C and to Pseudomonas aeruginosa hypothetical protein PA1190 TR:AAG04579 (EMBL:AE004549) (199 aa) fasta scores: E(): 0%2C 52.6%25 id in 192 aa gene gene2341 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2362 YPO2363 YPO2363 YPO2363 2657676 2657939 + conserved hypothetical protein Similar to Escherichia coli hypothetical protein YjbD SW:YJBD_ECOLI (P32685) (90 aa) fasta scores: E(): 2.1e-11%2C 51.1%25 id in 88 aa gene gene2342 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2363 YPO2364 YPO2364 ypmt1.57c ypmt1.57c 2658092 2658874 - insertion sequence IS100%2C ATP-binding protein Similar to Escherichia coli insertion sequence IS21 putative ATP-binding protein%2C IstB SW:ISTB_ECOLI (P15026) (265 aa) fasta scores: E(): 0%2C 47.4%25 id in 249 aa. Also almost identical to Yersinia pestis and Escherichia coli putative IS100 transposase ypmt1.57c TR:Q9R3L5 (EMBL:AL117211) (260 aa) fasta scores: E(): 0%2C 99.6%25 id in 260 aa. gene gene2343 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2364 YPO2365 YPO2365 y1093 y1093 2658871 2659893 - transposase for insertion sequence IS100 Similar to Escherichia coli transposase for insertion sequence element IS21 IstA SW:ISTA_ECOLI (P15025) (390 aa) fasta scores: E(): 3e-27%2C 33.1%25 id in 329 aa. Identical to the previously sequenced Yersinia pestis%2CYersinia pseudotuberculosis%2C and Escherichia coli pesticin plasmid insertion sequence transposase Y1055 TR:P74993 (EMBL:U59875) (340 aa) fasta scores: E(): 0%2C 100.0%25 id in 340 aa gene gene2344 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2365 YPO2366 YPO2366 YPO2366 2659979 2660098 + putative membrane protein (pseudogene) No significant database matches. This CDS is likely to have been disrupted by the upstream IS100 element pseudogene gene2345 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2366 YPO2367 YPO2367 gst gst 2660143 2660748 + glutathione S-transferase Similar to Escherichia coli glutathione S-transferase Gst SW:GT_ECOLI (P39100) (201 aa) fasta scores: E(): 0%2C 60.7%25 id in 201 aa%2C and to Proteus mirabilis glutathione S-transferase Gst SW:GT_PROMI (P15214) (203 aa) fasta scores: E(): 0%2C 61.0%25 id in 200 aa gene gene2346 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2367 YPO2368 YPO2368 pdxY pdxY 2660808 2661668 - pyridoxamine kinase Similar to Escherichia coli pyridoxamine kinase PdxY SW:PDXY_ECOLI (P77150) (287 aa) fasta scores: E(): 0%2C 75.2%25 id in 286 aa%2C and to Proteus mirabilis pyridoxamine kinase PdxY SW:PDXY_PROMI (Q51892) (289 aa) fasta scores: E(): 0%2C72.6%25 id in 288 aa gene gene2347 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2368 YPO2369 YPO2369 tyrS tyrS 2661823 2663097 - tyrosyl-tRNA synthetase Similar to Escherichia coli tyrosyl-tRNA synthetase TyrS SW:SYY_ECOLI (P00951) (423 aa) fasta scores: E(): 0%2C86.5%25 id in 421 aa%2C and to Neisseria meningitidis tyrosyl-tRNA synthetase NMB1835 TR:Q9JXY5 (EMBL:AE002533) (431 aa) fasta scores: E(): 0%2C 61.4%25 id in 430 aa gene gene2348 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2369 YPO2370 YPO2370 pdxH pdxH 2663279 2663932 - pyridoxamine 5'-phosphate oxidase Similar to Escherichia coli pyridoxamine 5'-phosphate oxidase PdxH SW:PDXH_ECOLI (P28225) (217 aa) fasta scores: E(): 0%2C 78.3%25 id in 217 aa%2C and to Vibrio cholerae pyridoxamine 5`-phosphate oxidase VCA1079 TR:Q9KKM4 (EMBL:AE004433) (211 aa) fasta scores: E(): 0%2C67.1%25 id in 210 aa gene gene2349 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2370 YPO2371 YPO2371 YPO2371 2664023 2664337 - putative lipoprotein Similar to Yersinia enterocolitica hypothetical protein SW:YOR4_YEREN (P28837) (101 aa) fasta scores: E(): 1.2e-26%2C 68.9%25 id in 106 aa%2C and to Escherichia coli hypothetical protein YdhA SW:YDHA_ECOLI (P28224) (109 aa) fasta scores: E(): 5.4e-15%2C 43.1%25 id in 102 aa gene gene2350 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2371 YPO2372 YPO2372 YPO2372 2664395 2665507 - conserved hypothetical protein Similar to Escherichia coli hypothetical protein YdhH SW:YDHH_ECOLI (P77570) (369 aa) fasta scores: E(): 0%2C71.2%25 id in 368 aa%2C and to Yersinia enterocolitica hypothetical protein SW:YPCP_YEREN (P31485) (271 aa) fasta scores: E(): 0%2C 80.0%25 id in 255 aa gene gene2351 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2372 YPO2373 YPO2373 pcp pcp 2666063 2666530 + putative lipoprotein Similar to Yersinia enterocolitica outer membrane lipoprotein precursor Pcp SW:PCP_YEREN (P31484) (155 aa) fasta scores: E(): 0%2C 90.3%25 id in 155 aa%2C to Escherichia coli outer membrane lipoprotein SlyB SW:SLYB_ECOLI (P55741) (155 aa) fasta scores: E(): 0%2C 74.8%25 id in 155 aa and to Yersinia pestis YPO3646 (157 aa) fasta scores: E(): 2.1e-34%2C 69.9%25 identity in 156 aa overlap gene gene2352 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2373 YPO2374 YPO2374 slyA slyA 2666674 2667105 - MarR-family transcriptional regulatory protein Similar to Yersinia enterocolitica transcriptional regulator RovA TR:Q9S3W0 (EMBL:AF171097) (143 aa) fasta scores: E(): 0%2C 95.1%25 id in 143 aa%2C and to Escherichia coli transcriptional regulator SlyA SW:SLYA_ECOLI (P55740) (146 aa) fasta scores: E(): 0%2C 76.9%25 id in 143 aa gene gene2353 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2374 YPO2375 YPO2375 YPO2375 2667903 2668799 - putative aldo/keto reductase Similar to Escherichia coli hypothetical oxidoreductase YdhF SW:YDHF_ECOLI (P76187) (298 aa) fasta scores: E(): 0%2C 72.8%25 id in 298 aa%2C and to Vibrio cholerae oxidoreductase%2C aldo/keto reductase 2 family protein VCA0859 TR:Q9KL87 (EMBL:AE004413) (307 aa) fasta scores: E(): 0%2C 61.5%25 id in 296 aa gene gene2354 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2375 YPO2376 YPO2376 YPO2376 2668931 2669296 - conserved hypothetical protein No significant database matches to the full length CDS. C-terminal region is similar to the C-terminus of Escherichia coli hypothetical protein YdhL SW:YDHL_ECOLI (P76188) (125 aa) fasta scores: E(): 8.6e-25%2C 68.5%25 id in 92 aa%2C and to the full length Vibrio cholerae hypothetical protein VC1662 TR:Q9KRI0 (EMBL:AE004244) (88 aa) fasta scores: E(): 7.9e-12%2C 45.9%25 id in 74 aa gene gene2355 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2376 YPO2377 YPO2377 YPO2377 2669344 2670981 + putative membrane protein Similar to Escherichia coli hypothetical protein YjdB SW:YJDB_ECOLI (P30845) (547 aa) fasta scores: E(): 0%2C51.0%25 id in 533 aa%2C and to Salmonella typhimurium hypothetical protein YjdB SW:YJDB_SALTY (P36555) (547 aa) fasta scores: E(): 0%2C 49.9%25 id in 529 aa gene gene2356 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2377 YPO2378 YPO2378 YPO2378 2671204 2671803 + TetR-family transcriptional regulatory protein Similar to Escherichia coli hypothetical transcriptional regulator YdhM SW:YDHM_ECOLI (P76189) (199 aa) fasta scores: E(): 0%2C 51.5%25 id in 200 aa%2C and to Pseudomonas aeruginosa probable transcriptional regulator PA2196 TR:AAG05584 (EMBL:AE004646) (194 aa) fasta scores: E(): 1.9e-27%2C 43.3%25 id in 194 aa gene gene2357 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2378 YPO2379 YPO2379 YPO2379 2671891 2672988 + NADH:flavin oxidoreductase / NADH oxidase family protein Similar to Pseudomonas putida morphinone reductase MorB TR:Q51990 (EMBL:U37350) (377 aa) fasta scores: E(): 0%2C53.0%25 id in 362 aa%2C and to Escherichia coli N-ethylmaleimide reductase NemA SW:NEMA_ECOLI (P77258) (365 aa) fasta scores: E(): 0%2C 74.5%25 id in 365 aa gene gene2358 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2379 YPO2380 YPO2380 sepC sepC 2673209 2676163 - insecticial toxin Similar to Serratia entomophila plasmid pADAP virulence protein SepC TR:AAG09644 (EMBL:AF135182) (973 aa) fasta scores: E(): 0%2C 73.6%25 id in 987 aa%2C to Photorhabdus luminescens insecticidal toxin complex protein TccC TR:O85157 (EMBL:AF047028) (1043 aa) fasta scores: E(): 0%2C54.8%25 id in 825 aa%2C and to Yersinia pestis YPO2312 putative insecticidal toxin complex (874 aa) fasta scores: E(): 0%2C64.9%25 identity in 880 aa overlap%2C YPO3674 (1011 aa) fasta scores: E(): 0%2C 51.4%25 identity in 699 aa overlap and YPO3673 (952 aa) fasta scores: E(): 0%2C 52.2%25 identity in 696 aa overlap. Note the G+C content - 54.78%25 gene gene2359 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2380 YPO2381 YPO2381 gloA gloA 2676436 2676843 + lactoylglutathione lyase Similar to Escherichia coli lactoylglutathione lyase GloA SW:LGUL_ECOLI (Q59384) (135 aa) fasta scores: E(): 0%2C79.3%25 id in 135 aa%2C and to Salmonella typhimurium lactoylglutathione lyase GloA SW:LGUL_SALTY (Q60003) (135 aa) fasta scores: E(): 0%2C 77.8%25 id in 135 aa gene gene2360 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2381 YPO2382 YPO2382 rnt rnt 2676955 2677602 + ribonuclease T Similar to Escherichia coli ribonuclease T Rnt SW:RNT_ECOLI (P30014) (215 aa) fasta scores: E(): 0%2C 79.3%25 id in 213 aa%2C and to Buchnera aphidicola (subsp. Acyrthosiphon pisum) ribonuclease T Rnt SW:RNT_BUCAI (P57285) (221 aa) fasta scores: E(): 0%2C 67.5%25 id in 209 aa gene gene2361 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2382 YPO2383 YPO2383 YPO2383 2677911 2678261 - conserved hypothetical protein Similar to Escherichia coli hypothetical protein YdhD SW:YDHD_ECOLI (P37010) (115 aa) fasta scores: E(): 0%2C87.8%25 id in 115 aa%2C and to Vibrio cholerae hypothetical protein VC2044 vc2044 TR:Q9KQF4 (EMBL:AE004279) (110 aa) fasta scores: E(): 0%2C 78.2%25 id in 110 aa gene gene2362 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2383 YPO2384 YPO2384 YPO2384 2678361 2678582 - hypothetical protein No significant database hits. Doubtful CDS gene gene2363 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2384 YPO2385 YPO2385 YPO2385 2678686 2679552 + putative exported protein Similar to Escherichia coli hypothetical protein YdhO SW:YDHO_ECOLI (P76190) (271 aa) fasta scores: E(): 8.5e-43%2C 52.613%25 id in 287 aa. C-terminal region is similar to the C-terminus of Escherichia coli hypothetical lipoprotein YafL SW:YAFL_ECOLI (Q47151) (249 aa) fasta scores: E(): 3.9e-26%2C 52.201%25 id in 159 aa gene gene2364 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2385 YPO2386 YPO2386 sodB sodB 2679930 2680508 + superoxide dismutase [Fe] Similar to Escherichia coli superoxide dismutase [Fe] SodB SW:SODF_ECOLI (P09157) (192 aa) fasta scores: E(): 0%2C 81.6%25 id in 190 aa%2C and to Vibrio cholerae superoxide dismutase [Fe] VC2045 TR:Q9KQF3 (EMBL:AE004279) (194 aa) fasta scores: E(): 0%2C 75.5%25 id in 192 aa gene gene2365 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2386 YPO2387 YPO2387 purR purR 2681035 2682060 + purine nucleotide synthesis repressor Similar to Escherichia coli purine nucleotide synthesis repressor PurR SW:PURR_ECOLI (P15039) (340 aa) fasta scores: E(): 0%2C 82.6%25 id in 340 aa%2C and to Salmonella typhimurium purine nucleotide synthesis repressor PurR SW:PURR_SALTY (O68446) (340 aa) fasta scores: E(): 0%2C 82.4%25 id in 340 aa gene gene2366 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2387 YPO2388 YPO2388 YPO2388 2682149 2683081 - LysR-family transcriptional regulatory protein Similar to Escherichia coli hypothetical transcriptional regulator YdhB SW:YDHB_ECOLI (P37598) (310 aa) fasta scores: E(): 0%2C 71.4%25 id in 301 aa%2C and to Vibrio cholerae LysR family transcriptional regulator VC2760 TR:Q9KNH9 (EMBL:AE004342) (302 aa) fasta scores: E(): 0%2C45.0%25 id in 300 aa gene gene2367 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2388 YPO2389 YPO2389 YPO2389 2683371 2684573 + putative drug resistance protein Similar to Escherichia coli bicyclomycin resistance protein YdhC TR:P77477 (EMBL:D90810) (403 aa) fasta scores: E(): 0%2C 64.9%25 id in 388 aa%2C and to Vibrio cholerae multidrug resistance protein vc2761 TR:Q9KNH8 (EMBL:AE004342) (409 aa) fasta scores: E(): 0%2C 43.3%25 id in 397 aa gene gene2368 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2389 YPO2390 YPO2390 cdfA cdfA 2685053 2686204 + cyclopropane-fatty-acyl-phospholipid synthase Similar to Escherichia coli cyclopropane-fatty-acyl-phospholipid synthase Cfa SW:CFA_ECOLI (P30010) (381 aa) fasta scores: E(): 0%2C 77.2%25 id in 382 aa%2C and to Helicobacter pylori cyclopropane fatty acid synthase HP0416 TR:O25171 (EMBL:AE000557) (389 aa) fasta scores: E(): 0%2C 39.6%25 id in 359 aa gene gene2369 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2390 YPO2391 YPO2391 ribC ribC 2686255 2686911 - riboflavin synthase alpha chain Similar to Escherichia coli riboflavin synthase alpha chain RibE SW:RISA_ECOLI (P29015) (213 aa) fasta scores: E(): 0%2C 79.5%25 id in 205 aa%2C and to Haemophilus influenzae riboflavin synthase alpha chain RibE SW:RISA_HAEIN (P45273) (204 aa) fasta scores: E(): 0%2C 64.0%25 id in 203 aa gene gene2370 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2391 YPO2392 YPO2392 YPO2392 2687160 2688533 + putative transport protein Similar to Vibrio parahaemolyticus Na(+)-driven multidrug efflux pump protein NorM TR:O82855 (EMBL:AB010463) (456 aa) fasta scores: E(): 0%2C 57.6%25 id in 446 aa%2C and to Escherichia coli hypothetical protein YdhE SW:YDHE_ECOLI (P37340) (457 aa) fasta scores: E(): 0%2C 75.7%25 id in 456 aa gene gene2371 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2392 YPO2393 YPO2393 pykF pykF 2689564 2690976 + pyruvate kinase I Similar to Escherichia coli pyruvate kinase I PykF SW:KPY1_ECOLI (P14178) (470 aa) fasta scores: E(): 0%2C 86.6%25 id in 470 aa%2C and to Salmonella typhimurium pyruvate kinase I PykF SW:KPY1_SALTY (P77983) (470 aa) fasta scores: E(): 0%2C 86.6%25 id in 470 aa gene gene2372 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2393 YPO2394 YPO2394 lpp lpp 2691297 2691533 + major outer membrane lipoprotein Similar to Escherichia coli major outer membrane lipoprotein precursor Lpp SW:MULI_ECOLI (P02937) (78 aa) fasta scores: E(): 1.6e-21%2C 87.2%25 id in 78 aa%2C and to Serratia marcescens major outer membrane lipoprotein precursor SW:MULI_SERMA (P02938) (77 aa) fasta scores: E(): 7.6e-22%2C 91.0%25 id in 78 aa gene gene2373 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2394 YPO2395 YPO2395 tnp tnp 2691724 2692182 + transposase for the IS1541 insertion element Similar to Salmonella typhimurium and Salmonella typhi transposase for insertion sequence IS200%2C TnpA%2CSW:TNPA_SALTY (Q57334) (152 aa) fasta scores: E(): 0%2C 93.4%25 id in 152 aa. Almost identical to the Yersinia pseudotuberculosis IS1541-like element transposase Tnp TR:Q9X9F5 (EMBL:AJ238014) (152 aa) fasta scores: E(): 0%2C99.3%25 id in 152 aa gene gene2374 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2395 YPO2396 YPO2396 y1093 y1093 2692764 2693786 + transposase for insertion sequence IS100 Similar to Escherichia coli transposase for insertion sequence element IS21 IstA SW:ISTA_ECOLI (P15025) (390 aa) fasta scores: E(): 3e-27%2C 33.1%25 id in 329 aa. Identical to the previously sequenced Yersinia pestis%2CYersinia pseudotuberculosis%2C and Escherichia coli pesticin plasmid insertion sequence transposase Y1055 TR:P74993 (EMBL:U59875) (340 aa) fasta scores: E(): 0%2C 100.0%25 id in 340 aa gene gene2375 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2396 YPO2397 YPO2397 ypmt1.57c ypmt1.57c 2693783 2694565 + insertion sequence IS100%2C ATP-binding protein Similar to Escherichia coli insertion sequence IS21 putative ATP-binding protein%2C IstB SW:ISTB_ECOLI (P15026) (265 aa) fasta scores: E(): 0%2C 47.4%25 id in 249 aa. Also almost identical to Yersinia pestis and Escherichia coli putative IS100 transposase ypmt1.57c TR:Q9R3L5 (EMBL:AL117211) (260 aa) fasta scores: E(): 0%2C 99.6%25 id in 260 aa. gene gene2376 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2397 YPO2398 YPO2398 YPO2398 2694635 2695628 - putative exported protein (pseudogene) Similar to Escherichia coli hypothetical protein precursor YcfS SW:YCFS_ECOLI (P75954) (320 aa) fasta scores: E(): 0%2C 63.2%25 id in 304 aa%2C and to Escherichia coli hypothetical protein ErfK SW:ERFK_ECOLI (P39176) (310 aa) fasta scores: E(): 0%2C 53.2%25 id in 314 aa. This CDS is disrupted by the insertion of IS100 element. The insertion occurred near the C-terminus. It is not clear whether this insertion affects the function of the protein. pseudogene gene2377 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2398 YPO2399 YPO2399 YPO2399 2695899 2696321 - conserved hypothetical protein Similar to Escherichia coli hypothetical protein YnhA SW:YNHA_ECOLI (P76194) (138 aa) fasta scores: E(): 0%2C68.1%25 id in 138 aa%2C and to Rhizobium etli hypothetical protein SW:YROS_RHIET (Q52742) (151 aa) fasta scores: E(): 5.2e-17%2C 41.5%25 id in 130 aa gene gene2378 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2399 YPO2400 YPO2400 YPO2400 2696410 2697630 - putative selenocysteine lyase Similar to Escherichia coli selenocysteine lyase CsdB TR:P77444 (EMBL:AE000263) (406 aa) fasta scores: E(): 0%2C 70.4%25 id in 406 aa%2C and to Bacillus subtilis probable cysteine desulfurase Csd TR:O32164 (EMBL:Z99120) (406 aa) fasta scores: E(): 0%2C 48.6%25 id in 399 aa%3B~Similar to Escherichia coli selenocysteine lyase CsdB or SufS or b1680 TR:P77444 (EMBL:AE000263) (406 aa) fasta scores: E(): 0%2C 70.4%25 id in 406 aa gene gene2379 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2400 YPO2401 YPO2401 YPO2401 2697627 2698850 - conserved hypothetical protein Similar to Escherichia coli hypothetical protein YnhC SW:YNHC_ECOLI (P77689) (423 aa) fasta scores: E(): 0%2C60.8%25 id in 403 aa%2C and to Synechocystis sp hypothetical protein SLR0076 SW:Y076_SYNY3 (Q55792) (453 aa) fasta scores: E(): 6.1e-31%2C 32.5%25 id in 385 aa gene gene2380 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2401 YPO2402 YPO2402 YPO2402 2698927 2699673 - putative ATP-dependent transporter Similar to Escherichia coli probable ATP-dependent transporter YnhD SW:YNHD_ECOLI (P77499) (248 aa) fasta scores: E(): 0%2C 82.7%25 id in 248 aa%2C and to Erwinia chrysanthemi putative ATPase essential for virulence SufC protein TR:CAC17126 (EMBL:AJ301654) (248 aa) fasta scores: E(): 0%2C 79.8%25 id in 248 aa gene gene2381 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2402 YPO2403 YPO2403 YPO2403 2699859 2701370 - conserved hypothetical protein Similar to Escherichia coli hypothetical protein YnhE SW:YNHE_ECOLI (P77522) (495 aa) fasta scores: E(): 0%2C84.1%25 id in 504 aa%2C and to Synechocystis sp hypothetical protein SLR0074 SW:Y074_SYNY3 (Q55790) (480 aa) fasta scores: E(): 0%2C 63.7%25 id in 487 aa gene gene2382 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2403 YPO2404 YPO2404 YPO2404 2701385 2701756 - conserved hypothetical protein Similar to Escherichia coli hypothetical protein YdiC SW:YDIC_ECOLI (P77667) (122 aa) fasta scores: E(): 6.3e-29%2C 65.0%25 id in 117 aa%2C and to Escherichia coli protein YfhF SW:YFHF_ECOLI (P36539) (107 aa) fasta scores: E(): 3.3e-17%2C 46.7%25 id in 105 aa gene gene2383 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2404 YPO2405 YPO2405 YPO2405 2701934 2702092 - hypothetical protein No significant database hits. Doubtful CDS gene gene2384 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2405 YPO2406 YPO2406 YPO2406 2702351 2702767 - conserved hypothetical protein Similar to Escherichia coli hypothetical protein YdiI TR:P77781 (EMBL:AE000263) (136 aa) fasta scores: E(): 0%2C 69.9%25 id in 136 aa%2C and to Escherichia coli hypothetical protein YbdB SW:YBDB_ECOLI (P15050) (137 aa) fasta scores: E(): 0%2C 61.8%25 id in 136 aa gene gene2385 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2406 YPO2407 YPO2407 YPO2407 2702889 2705945 - conserved hypothetical protein Similar to Escherichia coli hypothetical protein YdiJ SW:YDIJ_ECOLI (P77748) (1018 aa) fasta scores: E(): 0%2C79.0%25 id in 1018 aa%2C and to Vibrio cholerae hypothetical protein VC1198 TR:Q9KSQ8 (EMBL:AE004199) (1021 aa) fasta scores: E(): 0%2C 62.1%25 id in 1018 aa gene gene2386 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2407 YPO2408 YPO2408 YPO2408 2706566 2707669 + putative membrane protein Similar to Escherichia coli hypothetical protein YdiK SW:YDIK_ECOLI (P77175) (370 aa) fasta scores: E(): 0%2C63.7%25 id in 358 aa%2C and to Buchnera aphidicola (subsp. Acyrthosiphon pisum) hypothetical protein BU123 TR:BAB12841 (EMBL:AP001118) (360 aa) fasta scores: E(): 0%2C 50.9%25 id in 348 aa gene gene2387 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2408 YPO2409 YPO2409 pps pps 2708268 2710652 - phosphoenolpyruvate synthase Similar to Escherichia coli phosphoenolpyruvate synthase PpsA SW:PPSA_ECOLI (P23538) (791 aa) fasta scores: E(): 0%2C 83.6%25 id in 792 aa%2C and to Vibrio cholerae phosphoenolpyruvate synthase VCA0987 TR:Q9KKW3 (EMBL:AE004425) (803 aa) fasta scores: E(): 0%2C 70.0%25 id in 786 aa gene gene2388 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2409 YPO2410 YPO2410 YPO2410 2710989 2711810 + Conserved hypothetical protein Similar to Escherichia coli hypothetical protein YdiA SW:YDIA_ECOLI (P03822) (277 aa) fasta scores: E(): 0%2C80.6%25 id in 273 aa%2C and to Erwinia herbicola hypothetical protein YdiA SW:YDIA_ERWHE (O54458) (290 aa) fasta scores: E(): 0%2C 79.4%25 id in 272 aa gene gene2389 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2410 YPO2411 YPO2411 aroH aroH 2711967 2713013 + phospho-2-dehydro-3-deoxyheptonate aldolase Similar to Escherichia coli phospho-2-dehydro-3-deoxyheptonate aldolase%2C Trp-sensitive AroH SW:AROH_ECOLI (P00887) (348 aa) fasta scores: E(): 0%2C79.9%25 id in 348 aa%2C and to Erwinia herbicola phospho-2-dehydro-3-deoxyheptonate aldolase%2C Trp-sensitive AroH SW:AROH_ERWHE (O54459) (348 aa) fasta scores: E(): 0%2C74.4%25 id in 348 aa. Similar to YPO3286 (358 aa) fasta scores: E(): 0%2C 53.4%25 identity in 343 aa overlap and YPO1130 (338 aa) fasta scores: E(): 0%2C 53.6%25 identity in 330 aa overlap gene gene2390 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2411 YPO2412 YPO2412 YPO2412 2713182 2714645 - conserved hypothetical protein (pseudogene) Similar to Escherichia coli hypothetical protein YdiU SW:YDIU_ECOLI (P77649) (478 aa) fasta scores: E(): 0%2C64.8%25 id in 477 aa%2C and to Vibrio cholerae hypothetical protein VC1931 TR:Q9KQR7 (EMBL:AE004269) (508 aa) fasta scores: E(): 0%2C 49.6%25 id in 486 aa. There is a nonsense mutation (ochre) at position 245. The sequence has been checked and is believed to be correct pseudogene gene2391 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2412 YPO2414 YPO2414 lplA lplA 2714697 2715713 - putative lipoate-protein ligase A Similar to Escherichia coli lipoate-protein ligase A LplA SW:LPLA_ECOLI (P32099) (337 aa) fasta scores: E(): 0%2C74.8%25 id in 337 aa%2C and to Vibrio cholerae lipoate-protein ligase A VC1388 TR:Q9KS71 (EMBL:AE004218) (338 aa) fasta scores: E(): 0%2C 60.3%25 id in 335 aa gene gene2392 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2414 YPO2415 YPO2415 nlpC nlpC 2715838 2716302 - putative lipoprotein Similar to Escherichia coli probable lipoprotein NlpC precursor SW:NLPC_ECOLI (P23898) (154 aa) fasta scores: E(): 0%2C 68.6%25 id in 153 aa%2C and to Pasteurella multocida hypothetical protein PM0627 TR:AAK02711 (EMBL:AE006099) (159 aa) fasta scores: E(): 2.8e-31%2C 55.5%25 id in 146 aa gene gene2393 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2415 YPO2416 YPO2416 YPO2416 2716582 2716968 - putative membrane protein Similar to Pseudomonas aeruginosa hypothetical protein PA3558 TR:AAG06946 (EMBL:AE004776) (137 aa) fasta scores: E(): 3.8e-15%2C 43.4%25 id in 129 aa%2C and to Salmonella typhimurium hypothetical protein TR:O52329 (EMBL:AF036677) (125 aa) fasta scores: E(): 4.3e-11%2C 37.3%25 id in 118 aa gene gene2394 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2416 YPO2417 YPO2417 YPO2417 2716965 2717309 - putative membrane protein Similar to Salmonella typhi hypothetical protein YfbW TR:P81891 (EMBL:AF071082) (111 aa) fasta scores: E(): 8.8e-17%2C 50.0%25 id in 106 aa%2C and to Pseudomonas aeruginosa hypothetical protein PA3557 TR:AAG06945 (EMBL:AE004776) (115 aa) fasta scores: E(): 4e-12%2C 42.7%25 id in 110 aa gene gene2395 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2417 YPO2418 YPO2418 YPO2418 2717306 2718970 - dolichyl-phosphate-mannose-protein mannosyltransferase-family protein Similar to Escherichia coli hypothetical protein TR:P76473 (EMBL:AE000315) (550 aa) fasta scores: E(): 0%2C53.9%25 id in 538 aa%2C and to Salmonella typhimurium hypothetical protein TR:O52327 (EMBL:AF036677) (548 aa) fasta scores: E(): 0%2C 54.0%25 id in 544 aa gene gene2396 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2418 YPO2419 YPO2419 YPO2419 2718967 2719872 - conserved hypothetical protein Similar to Salmonella typhimurium hypothetical protein YfbH TR:O52326 (EMBL:AF036677) (299 aa) fasta scores: E(): 0%2C 61.9%25 id in 294 aa%2C and to Escherichia coli hypothetical protein yfbH TR:P76472 (EMBL:AE000315) (296 aa) fasta scores: E(): 0%2C 61.9%25 id in 294 aa gene gene2397 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2419 YPO2420 YPO2420 YPO2420 2719869 2721872 - probable formyl transferase Similar to Escherichia coli hypothetical protein YfbG SW:YFBG_ECOLI (P77398) (660 aa) fasta scores: E(): 0%2C70.8%25 id in 661 aa%2C and to Salmonella typhimurium hypothetical protein YfbG SW:YFBG_SALTY (O52325) (660 aa) fasta scores: E(): 0%2C 70.8%25 id in 660 aa gene gene2398 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2420 YPO2421 YPO2421 pmrF pmrF 2721869 2722852 - probable glycosyl transferase Similar to Salmonella typhimurium polymixin resistance protein PmrF TR:O52324 (EMBL:AF036677) (327 aa) fasta scores: E(): 0%2C 78.0%25 id in 314 aa%2C and to Escherichia coli hypothetical protein YfbF SW:YFBF_ECOLI (P77757) (322 aa) fasta scores: E(): 0%2C 77.8%25 id in 316 aa gene gene2399 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2421 YPO2422 YPO2422 YPO2422 2722839 2723993 - conserved hypothteical protein Similar to Salmonella typhimurium hypothetical protein YfbE TR:O52323 (EMBL:AF036677) (385 aa) fasta scores: E(): 0%2C 69.0%25 id in 378 aa%2C and to Escherichia coli hypothetical protein YfbE SW:YFBE_ECOLI (P77690) (390 aa) fasta scores: E(): 0%2C 69.3%25 id in 378 aa gene gene2400 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2422 YPO2423 YPO2423 btuD btuD 2724343 2725104 - putative vitamin B12 transport ATP-binding protein Similar to Escherichia coli vitamin B12 transport ATP-binding protein BtuD SW:BTUD_ECOLI (P06611) (249 aa) fasta scores: E(): 0%2C 45.6%25 id in 237 aa%2C and to Vibrio cholerae putative vitamin B12 ABC transporter%2C ATP-binding protein BtuD TR:Q9KSL1 (EMBL:AE004203) (251 aa) fasta scores: E(): 8.8e-31%2C 44.2%25 id in 233 aa gene gene2401 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2423 YPO2424 YPO2424 btuE btuE 2725126 2725680 - putative vitamin B12 transport protein Similar to Escherichia coli vitamin B12 transport periplasmic protein BtuE SW:BTUE_ECOLI (P06610) (183 aa) fasta scores: E(): 0%2C 59.9%25 id in 182 aa%2C and to Neisseria meningitidis (serogroup A)%2C glutathione peroxidase homologue GpxA SW:GPXA_NEIMA (P52036) (177 aa) fasta scores: E(): 9.2e-26%2C 45.0%25 id in 169 aa gene gene2402 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2424 YPO2425 YPO2425 btuC btuC 2725750 2726757 - puative vitamin B12 transport system permease protein Similar to Escherichia coli vitamin B12 transport system permease protein BtuC SW:BTUC_ECOLI (P06609) (326 aa) fasta scores: E(): 0%2C 68.0%25 id in 325 aa%2C and to Vibrio cholerae putative vitamin B12 ABC transporter%2C permease protein BtuC TR:Q9KSL2 (EMBL:AE004203) (335 aa) fasta scores: E(): 0%2C 49.1%25 id in 330 aa gene gene2403 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2425 YPO2426 YPO2426 YPO2426 2726984 2727442 - putative exported protein Similar to Escherichia coli hypothetical protein YpeC SW:YPEC_ECOLI (P76527) (108 aa) fasta scores: E(): 0.00066%2C 31.3%25 id in 115 aa%2C and to Escherichia coli hypothetical protein YaaX or b0005 SW:YAAX_ECOLI (P75616) (98 aa) fasta scores: E(): 7.6e-05%2C 28.7%25 id in 129 aa gene gene2404 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2426 YPO2427 YPO2427 hid hid 2727776 2728072 - integration host factor alpha-subunit Similar to Escherichia coli integration host factor alpha-subunit IhfA SW:IHFA_ECOLI (P06984) (99 aa) fasta scores: E(): 0%2C 92.9%25 id in 98 aa%2C and to Serratia marcescens integration host factor alpha-subunit IhfA SW:IHFA_SERMA (P23302) (99 aa) fasta scores: E(): 0%2C 97.9%25 id in 97 aa gene gene2405 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2427 YPO2428 YPO2428 pheT pheT 2728077 2730464 - phenylalanyl-tRNA synthetase beta chain Similar to Escherichia coli phenylalanyl-tRNA synthetase beta chain PheT SW:SYFB_ECOLI (P07395) (795 aa) fasta scores: E(): 0%2C 83.4%25 id in 795 aa%2C and to Haemophilus influenzae phenylalanyl-tRNA synthetase beta chain PheT SW:SYFB_HAEIN (P43820) (795 aa) fasta scores: E(): 0%2C 64.7%25 id in 795 aa gene gene2406 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2428 YPO2429 YPO2429 pheS pheS 2730478 2731461 - phenylalanyl-tRNA synthetase alpha chain Similar to Escherichia coli phenylalanyl-tRNA synthetase alpha chain PheS SW:SYFA_ECOLI (P08312) (327 aa) fasta scores: E(): 0%2C 90.2%25 id in 327 aa%2C and to Vibrio cholerae phenylalanyl-tRNA synthetase alpha chain PheS TR:Q9KSN7 (EMBL:AE004202) (327 aa) fasta scores: E(): 0%2C76.1%25 id in 327 aa gene gene2407 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2429 YPO2429a YPO2429a ecs2422 ecs2422 2731818 2731862 - phenylalanyl-tRNA synthetase operon leader peptide Highly similar to several phenylalanyl-tRNA synthease leader peptides including: Escherichia coli O157:H7 ECS2422 TR:BAB35845 (EMBL:AP002558) (14 aa) fasta scores: E(): 0.0016%2C 76.923%25 id in 13 aa and Escherichia coli pheM SW:LPF2_ECOLI (P06985) (14 aa) fasta scores: E(): 0.0016%2C 76.923%25 id in 13 aa gene gene2408 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2429a YPO2430 YPO2430 pdzA pdzA 2731960 2732316 - 50S ribosomal protein L20 Similar to Escherichia coli 50S ribosomal protein L20 RplT SW:RL20_ECOLI (P02421) (117 aa) fasta scores: E(): 0%2C 97.4%25 id in 117 aa%2C and to Haemophilus influenzae 50S ribosomal protein L20 RplT SW:RL20_HAEIN (P44358) (116 aa) fasta scores: E(): 0%2C 95.7%25 id in 116 aa gene gene2409 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2430 YPO2431 YPO2431 rpmI rpmI 2732354 2732551 - 50S ribosomal protein L35 Similar to Escherichia coli 50S ribosomal protein L35 RpmI SW:RL35_ECOLI (P07085) (64 aa) fasta scores: E(): 1.8e-25%2C 89.1%25 id in 64 aa%2C and to Haemophilus influenzae 50S ribosomal protein L35 RpmI SW:RL35_HAEIN (P45519) (64 aa) fasta scores: E(): 1.2e-21%2C 81.3%25 id in 64 aa gene gene2410 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2431 YPO2432 YPO2432 fit fit 2732648 2733199 - translation initiation factor IF-3 Similar to Serratia marcescens translation initiation factor IF-3 InfC SW:IF3_SERMA (P33320) (183 aa) fasta scores: E(): 0%2C 94.0%25 id in 183 aa%2C and to Escherichia coli translation initiation factor IF-3 InfC SW:IF3_ECOLI (P02999) (180 aa) fasta scores: E(): 0%2C 89.1%25 id in 183 aa. The start codon is an AUU%2C as with the E. coli IF-3 InfC gene gene2411 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2432 YPO2433 YPO2433 thrS thrS 2733203 2735131 - threonyl-tRNA synthetase Similar to Escherichia coli threonyl-tRNA synthetase ThrS SW:SYT_ECOLI (P00955) (642 aa) fasta scores: E(): 0%2C88.3%25 id in 642 aa%2C and to Haemophilus influenzae threonyl-tRNA synthetase ThrS SW:SYT_HAEIN (P43014) (643 aa) fasta scores: E(): 0%2C 77.9%25 id in 642 aa gene gene2412 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2433 YPO2434 YPO2434 YPO2434 2735522 2735734 + conserved hypothetical protein Similar to Caulobacter crescentus hypothetical protein CC0128 TR:Q9ABU2 (EMBL:AE005687) (66 aa) fasta scores: E(): 6.5e-05%2C 38.983%25 id in 59 aa%2C and to the C-terminal region of Rhizobium loti hypothetical protein MLL6859 TR:BAB53070 (EMBL:AP003010) (109 aa) fasta scores: E(): 0.0025%2C 34.783%25 id in 69 aa gene gene2413 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2434 YPO2435 YPO2435 YPO2435 2736044 2736421 + putative membrane protein No significant database matches gene gene2414 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2435 YPO2436 YPO2436 YPO2436 2736493 2736807 - hypothetical protein No significant database hits gene gene2415 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2436 YPO2437 YPO2437 marC marC 2737063 2737746 + multiple antibiotic resistance protein Similar to Escherichia coli multiple antibiotic resistance protein MarC SW:MARC_ECOLI (P31123) (221 aa) fasta scores: E(): 0%2C 73.8%25 id in 221 aa%2C and to Salmonella typhimurium multiple antibiotic resistance protein MarC SW:MARC_SALTY (Q56068) (221 aa) fasta scores: E(): 0%2C 72.9%25 id in 221 aa gene gene2416 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2437 YPO2438 YPO2438 YPO2438 2737868 2738530 - putative membrane-bound lytic murein transglycosylase Similar to Escherichia coli membrane-bound lytic murein transglycosylase E MltE SW:MLTE_ECOLI (P76009) (241 aa) fasta scores: E(): 0%2C 49.8%25 id in 211 aa%2C and to the C-terminal region of Escherichia coli membrane-bound lytic murein transglycosylase C MltC SW:MLTC_ECOLI (P52066) (359 aa) fasta scores: E(): 1.8e-28%2C 45.8%25 id in 179 aa gene gene2417 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2438 YPO2439 YPO2439 yfeA yfeA 2738739 2739710 + periplasmic-binding protein Previously sequenced as Yersinia pestis periplasmic-binding protein YfeA TR:Q56952 (EMBL:U50597) (322 aa) fasta scores: E(): 0%2C 100.0%25 id in 322 aa. Similar to Haemophilus influenzae putative periplasmic iron-binding protein Hi0362 precursor hi0362 TR:Q57449 (EMBL:U32720) (293 aa) fasta scores: E(): 0%2C 74.9%25 id in 271 aa gene gene2418 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2439 YPO2440 YPO2440 yfeB yfeB 2739707 2740597 + ATP-binding transport protein Previously sequenced as Yersinia pestis ATP-binding protein YfeB TR:Q56953 (EMBL:U50597) (296 aa) fasta scores: E(): 0%2C 100.0%25 id in 296 aa gene gene2419 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2440 YPO2441 YPO2441 yfeC yfeC 2740597 2741481 + chelated iron transport system membrane protein Previously sequenced as Yersinia pestis chelated iron transport system membrane protein YfeC SW:YFEC_YERPE (Q56954) (294 aa) fasta scores: E(): 0%2C 100.0%25 id in 294 aa gene gene2420 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2441 YPO2442 YPO2442 yfeD yfeD 2741478 2742371 + chelated iron transport system membrane protein Previously sequenced as Yersinia pestis chelated iron transport system membrane protein YfeD SW:YFED_YERPE (Q56955) (297 aa) fasta scores: E(): 0%2C 99.7%25 id in 297 aa gene gene2421 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2442 YPO2443 YPO2443 YPO2443 2742439 2742651 + putative membrane protein No significant database matches. Doubtful CDS gene gene2422 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2443 YPO2444 YPO2444 YPO2444 2742676 2743551 + conserved hypothetical protein Similar to Escherichia coli hypothetical protein YniA TR:P77739 (EMBL:AE000267) (286 aa) fasta scores: E(): 0%2C 68.7%25 id in 284 aa%2C and to Vibrio cholerae hypothetical protein VC1539 TR:Q9KRU5 (EMBL:AE004232) (288 aa) fasta scores: E(): 0%2C 48.6%25 id in 286 aa gene gene2423 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2444 YPO2445 YPO2445 yfeE yfeE 2743680 2744234 - putative yfeABCD locus regulator Previously sequenced as Yersinia pestis putative regulator of yfe inorganic iron transport locus%2C YfeE SW:YFEE_YERPE (Q56956) (184 aa) fasta scores: E(): 0%2C100.0%25 id in 184 aa gene gene2424 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2445 YPO2446 YPO2446 YPO2446 2744645 2745310 + conserved hypothetical protein Similar to Escherichia coli hypothetical protein YniC SW:YNIC_ECOLI (P77247) (222 aa) fasta scores: E(): 0%2C65.9%25 id in 220 aa gene gene2425 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2446 YPO2447 YPO2447 y1062 y1062 2745561 2746769 - transposase for the IS285 insertion element Previously sequenced Yersinia pestis transposase Y1062 or Ypmt1.80C TR:O68779 (EMBL:AF053947) (402 aa) fasta scores: E(): 0%2C 100.0%25 id in 402 aa. gene gene2426 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2447 YPO2448 YPO2448 solA solA 2747130 2748245 + putative sarcosine oxidase Similar to Escherichia coli putative sarcosine oxidase SolA SW:SAOX_ECOLI (P40874) (372 aa) fasta scores: E(): 0%2C 64.5%25 id in 372 aa%2C and to Arthrobacter sp sarcosine oxidase SoxA SW:SAOX_ARTSP (P40873) (388 aa) fasta scores: E(): 0%2C 41.2%25 id in 376 aa%2C and to Bacillus sp. sarcosine oxidase SW:SAOX_BACSN (P23342) (387 aa) fasta scores: E(): 0%2C 41.6%25 id in 375 aa gene gene2427 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2448 YPO2449 YPO2449 YPO2449 2748512 2749126 + putative LuxR-family regulatory protein Similar to Salmonella typhi colanic acid capsular biosynthesis activation protein A RcsA SW:RCSA_SALTI (Q56083) (207 aa) fasta scores: E(): 2.2e-06%2C 26.6%25 id in 207 aa%2C and to Escherichia coli colanic acid capsular biosynthesis activation protein A RcsA SW:RCSA_ECOLI (P24210) (207 aa) fasta scores: E(): 0.00027%2C 25.2%25 id in 210 aa. Contains a 2x PIPLTESVS repeat between codons 92 and 110 gene gene2428 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2449 YPO2450 YPO2450 YPO2450 2749698 2750756 - putative membrane protein Similar to Escherichia coli hypothetical protein YdgG SW:YDGG_ECOLI (P77535) (344 aa) fasta scores: E(): 0%2C60.0%25 id in 340 aa%2C and to Escherichia coli hypothetical protein YhhT SW:YHHT_ECOLI (P37622) (349 aa) fasta scores: E(): 0%2C 48.4%25 id in 343 aa gene gene2429 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2450 YPO2451 YPO2451 YPO2451 2750905 2751972 - conserved hypothetical protein Similar to Escherichia coli hypothetical protein YceA SW:YCEA_ECOLI (P24188) (350 aa) fasta scores: E(): 0%2C73.9%25 id in 348 aa%2C and to Chlamydia trachomatis hypothetical protein YceA TR:O84632 (EMBL:AE001333) (327 aa) fasta scores: E(): 6.3e-29%2C 36.6%25 id in 317 aa gene gene2430 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2451 YPO2452 YPO2452 YPO2452 2752016 2752144 - hypothetical protein No significant database hits. Doubtful CDS gene gene2431 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2452 YPO2453 YPO2453 YPO2453 2752331 2752693 - putative membrane protein No significant database matches gene gene2432 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2453 YPO2454 YPO2454 YPO2454 2752825 2752986 - hypothetical protein No significant database hits. Doubtful CDS gene gene2433 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2454 YPO2455 YPO2455 YPO2455 2753023 2753721 - putative membrane protein Similar to the N-terminal regions of Bacillus subtilis hypothetical protein YvbV SW:YVBV_BACSU (O32256) (305 aa) fasta scores: E(): 4.9e-07%2C 27.0%25 id in 204 aa%2Cand Escherichia coli hypothetical protein YedA SW:YEDA_ECOLI (P09185) (306 aa) fasta scores: E(): 2.4e-05%2C25.8%25 id in 209 aa gene gene2434 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2455 YPO2456 YPO2456 ypeI ypeI 2754119 2754775 + N-acylhomoserine lactone synthase YpeI Previously sequenced as Yersinia pestis%2Cquorum-sensing signal generator%2C N-acylhomoserine lactone synthase%2C YpeI TR:Q9RH44 (EMBL:AF071401) (214 aa) fasta scores: E(): 0%2C 100.0%25 id in 214 aa. Similar to Erwinia chrysanthemi autoinducer synthesis protein ExpI SW:EXPI_ERWCH (Q47187) (212 aa) fasta scores: E(): 0%2C 54.8%25 id in 210 aa. Similar to YPO0984 (46.9%25 identity in 213 aa overlap) gene gene2435 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2456 YPO2457 YPO2457 ypeR ypeR 2754768 2755505 - quorum-sensing transcriptional activator YpeR Previously sequenced as Yersinia pestis quorum-sensing transcriptional activator YpeR TR:Q9RH45 (EMBL:AF071401) (245 aa) fasta scores: E(): 0%2C 100.0%25 id in 245 aa. Similar to Erwinia chrysanthemi transcriptional activator protein ExpR SW:EXPR_ERWCH (Q47188) (250 aa) fasta scores: E(): 0%2C 55.1%25 id in 245 aa. Similar to YPO0985 (47.7%25 identity in 239 aa overlap) gene gene2436 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2457 YPO2458 YPO2458 YPO2458 2755992 2756972 - putative LysR-family transcriptional regulator Similar to Pseudomonas aeruginosa probable transcriptional regulator PA0032 TR:AAG03422 (EMBL:AE004442) (304 aa) fasta scores: E(): 4.8e-24%2C 34.4%25 id in 299 aa%2C and to Escherichia coli peroxide resistance protein PerR SW:PERR_ECOLI (Q57083) (297 aa) fasta scores: E(): 3.8e-20%2C 29.8%25 id in 295 aa gene gene2437 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2458 YPO2459 YPO2459 YPO2459 2757366 2758724 + putative transporter protein Similar to Escherichia coli hypothetical metabolite transport protein YgcS SW:YGCS_ECOLI (Q46909) (445 aa) fasta scores: E(): 0%2C 62.4%25 id in 436 aa%2C and to Escherichia coli hypothetical metabolite transport protein YaaU SW:YAAU_ECOLI (P31679) (443 aa) fasta scores: E(): 0%2C36.8%25 id in 437 aa gene gene2438 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2459 YPO2460 YPO2460 YPO2460 2758771 2759274 + conserved hypothetical protein Similar to Methylobacterium extorquens formaldehyde-activating enzyme TR:AAG32954 (EMBL:AF032114) (170 aa) fasta scores: E(): 8.8e-13%2C 28.6%25 id in 161 aa%2Cand to the N-terminus of Archaeoglobus fulgidus D-arabino 3-hexulose 6-phosphate formaldehyde lyase AF1305 TR:O28964 (EMBL:AE001014) (394 aa) fasta scores: E(): 5.1e-17%2C 32.7%25 id in 162 aa gene gene2439 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2460 YPO2461 YPO2461 YPO2461 2759285 2760304 + putative oxidoreductase Similar to Streptomyces coelicolor putative oxidoreductase SCE56.02 TR:Q9L1S0 (EMBL:AL138852) (336 aa) fasta scores: E(): 0%2C 44.2%25 id in 317 aa%2C and to Escherichia coli hypothetical oxidoreductase YajO SW:YAJO_ECOLI (P77735) (324 aa) fasta scores: E(): 0%2C 41.2%25 id in 323 aa gene gene2440 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2461 YPO2462 YPO2462 YPO2462 2760382 2760936 - conserved hypothetical protein Similar to Pasteurella multocida hypothetical protein PM0308 TR:Q9CNW5 (EMBL:AE006066) (186 aa) fasta scores: E(): 5.8e-13%2C 32.620%25 id in 187 aa gene gene2441 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2462 YPO2463 YPO2463 YPO2463 2760947 2761951 - conserved hypothetical protein Similar to Pasteurella multocida hypothetical protein PM0307 TR:Q9CNW6 (EMBL:AE006066) (335 aa) fasta scores: E(): 1.9e-67%2C 55.522%25 id in 335 aa gene gene2442 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2463 YPO2464 YPO2464 YPO2464 2761969 2762919 - conserved hypothetical protein Similar to Pasteurella multocida hypothetical protein PM0306 TR:Q9CNW7 (EMBL:AE006066) (327 aa) fasta scores: E(): 4.2e-07%2C 34.049%25 id in 326 aa gene gene2443 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2464 YPO2465 YPO2465 YPO2465 2762916 2764262 - conserved hypothetical protein Similar to Pasteurella multocida hypothetical protein PM0305 TR:Q9CNW8 (EMBL:AE006066) (444 aa) fasta scores: E(): 1.6e-25%2C 28.918%25 id in 453 aa gene gene2444 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2465 YPO2466 YPO2466 YPO2466 2764300 2764554 - hypothetical protein Poor database matches. Weakly similar to an internal region of Chlamydia muridarum ATP-dependent helicase PcrA tc0898 TR:Q9PJD1 (EMBL:AE002356) (634 aa) fasta scores: E(): 5%2C 25.301%25 id in 83 aa gene gene2445 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2466 YPO2467 YPO2467 YPO2467 2764670 2767957 - conserved hypothetical protein Similar to Pasteurella multocida hypothetical protein PM0312 TR:Q9CNW1 (EMBL:AE006067) (1106 aa) fasta scores: E(): 4.8e-143%2C 40.941%25 id in 1126 aa gene gene2446 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2467 YPO2468 YPO2468 YPO2468 2767954 2768940 - conserved hypothetical protein Similar to Pasteurella multocida hypothetical protein PM0311 TR:Q9CNW2 (EMBL:AE006067) (326 aa) fasta scores: E(): 6.5e-74%2C 58.413%25 id in 315 aa gene gene2447 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2468 YPO2469 YPO2469 YPO2469 2769322 2769654 - conserved hypothetical protein Similar to Pasteurella multocida hypothetical protein PM0309 TR:Q9CNW4 (EMBL:AE006067) (118 aa) fasta scores: E(): 0.028%2C 33.028%25 id in 109 aa. N-terminal region is similar to Pasteurella multocida hypothetical protein PM1841 TR:Q9CJZ7 (EMBL:AE006222) (93 aa) fasta scores: E(): 8.4e-08%2C 43.478%25 id in 92 aa gene gene2448 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2469 YPO2470 YPO2470 YPO2470 2770137 2771384 + putative membrane protein Similar to Escherichia coli hypothetical protein YbdG SW:YBDG_ECOLI (P39455) (415 aa) fasta scores: E(): 0%2C62.9%25 id in 410 aa%2C and to Vibrio cholerae hypothetical protein VC0265 TR:Q9KV91 (EMBL:AE004115) (412 aa) fasta scores: E(): 0%2C 59.0%25 id in 410 aa gene gene2449 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2470 YPO2471 YPO2471 YPO2471 2771967 2773241 - putative exported protein No significant database matches gene gene2450 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2471 YPO2472 YPO2472 YPO2472 2773280 2774395 - putative exported protein No significant database matches gene gene2451 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2472 YPO2473 YPO2473 YPO2473 2774518 2775456 - hypothetical protein No significant database hits gene gene2452 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2473 YPO2474 YPO2474 YPO2474 2775483 2776538 - conserved hypothetical protein Similar in its C-terminal domain to Thermotoga maritima conserved hypothetical protein TM1852 TR:Q9X2G7 (EMBL:AE001822) (296 aa) fasta scores: E(): 0%2C 44.8%25 id in 250 aa gene gene2453 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2474 YPO2475 YPO2475 YPO2475 2776685 2777509 - sugar ABC transporter%2C permease protein Similar to Thermotoga maritima possible sugar ABC transporter permease protein TM1853 TR:Q9X2G8 (EMBL:AE001822) (273 aa) fasta scores: E(): 0%2C 52.9%25 id in 274 aa%2C and to Xylella fastidiosa ABC transporter sugar permease XF2446 TR:Q9PAP9 (EMBL:AE004053) (278 aa) fasta scores: E(): 1.9e-30%2C 32.8%25 id in 268 aa gene gene2454 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2475 YPO2476 YPO2476 YPO2476 2777510 2778385 - sugar ABC transporter%2C permease protein Similar to Thermotoga maritima sugar ABC transporter permease protein TM1854 TR:Q9X2G9 (EMBL:AE001822) (290 aa) fasta scores: E(): 0%2C 54.5%25 id in 288 aa%2C and to Thermus brockianus putative integral membrane protein BdtF TR:Q9X6C4 (EMBL:AF135398) (280 aa) fasta scores: E(): 6.1e-26%2C 34.5%25 id in 252 aa gene gene2455 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2476 YPO2477 YPO2477 YPO2477 2778494 2779780 - putative solute-binding protein Similar to Thermotoga maritima sugar ABC transporter%2C periplasmic sugar-binding protein%2C putative TM1855 TR:Q9X2H0 (EMBL:AE001822) (418 aa) fasta scores: E(): 0%2C 50.8%25 id in 400 aa%2C and to Xylella fastidiosa ABC transporter sugar-binding protein XF2448 TR:Q9PAP7 (EMBL:AE004053) (430 aa) fasta scores: E(): 9.8e-12%2C 21.5%25 id in 423 aa gene gene2456 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2477 YPO2478 YPO2478 YPO2478 2780052 2781092 + LacI-family transcriptional regulatory protein Similar to Mycobacterium tuberculosis hypothetical protein RV3575c TR:P96857 (EMBL:Z92774) (359 aa) fasta scores: E(): 0%2C 34.4%25 id in 349 aa%2C and to Agrobacterium radiobacter plasmid pAtC58 transcriptional repressor TR:Q9WWF6 (EMBL:AF151698) (383 aa) fasta scores: E(): 2.6e-12%2C 25.5%25 id in 330 aa gene gene2457 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2478 YPO2479 YPO2479 manB manB 2781109 2782497 + phosphomannomutase Similar to Escherichia coli phosphomannomutase ManB SW:RFK9_ECOLI (P37755) (456 aa) fasta scores: E(): 0%2C 61.5%25 id in 462 aa%2C to Salmonella montevideo phosphomannomutase ManB SW:MANB_SALMO (Q01411) (456 aa) fasta scores: E(): 0%2C61.4%25 id in 461 aa and to Yersinia pestis YPO3097 (457 aa) fasta scores: E(): 0%2C 61.4%25 identity in 461 aa overlap gene gene2458 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2479 YPO2480 YPO2480 mtlK mtlK 2782597 2783676 + putative mannitol transport ATP-binding protein Similar to Pseudomonas fluorescens probable mannitol transport ATP-binding protein MtlK TR:O30494 (EMBL:AF007800) (367 aa) fasta scores: E(): 0%2C 46.7%25 id in 360 aa%2C and to Escherichia coli maltose/maltodextrin transport ATP-binding protein MalK SW:MALK_ECOLI (P02914) (371 aa) fasta scores: E(): 0%2C 47.1%25 id in 365 aa gene gene2459 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2480 YPO2481 YPO2481 YPO2481 2783941 2784486 - putative exported protein Similar to the N-terminal region of Pseudomonas putida putative sulfonate binding protein precursor SsuA TR:O85763 (EMBL:AF075709) (321 aa) fasta scores: E(): 6.5%2C24.194%25 id in 186 aa gene gene2460 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2481 YPO2482 YPO2482 YPO2482 2784744 2785196 - hypothetical protein Poor database matches. Weakly similar to Mycobacterium tuberculosis hypothetical protein AT10S TR:Q50577 (EMBL:D17369) (170 aa) fasta scores: E(): 0.97%2C35.714%25 id in 70 aa gene gene2461 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2482 YPO2483 YPO2483 YPO2483 2785296 2785700 - hypothetical protein Poor database matches. Similar to an internal region of Bacillus subtilis hypothetical protein YdaK TR:P96585 (EMBL:AB001488) (283 aa) fasta scores: E(): 7.8%2C 26.316%25 id in 114 aa gene gene2462 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2483 YPO2484 YPO2484 YPO2484 2785842 2786009 - hypothetical protein No significant database hits gene gene2463 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2484 YPO2485 YPO2485 YPO2485 2786212 2786409 - conserved hypothetical protein Similar to Caulobacter crescentus hypothetical protein CC3362 TR:Q9A344 (EMBL:AE005997) (71 aa) fasta scores: E(): 0.29%2C 32.353%25 id in 68 aa gene gene2464 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2485 YPO2486 YPO2486 YPO2486 2786419 2788452 - conserved hypothetical protein Low similarity to the C-terminal domain of Xylella fastidiosa hemaglutinin-like secreted protein XF2775 TR:Q9P9U6 (EMBL:AE004082) (3455 aa) fasta scores: E(): 2e-09%2C 26.4%25 id in 605 aa and similar to Yersinia pestis YPO2490 (2535 aa) fasta scores: E(): 0%2C 98.4%25 identity in 426 aa overlap gene gene2465 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2486 YPO2487 YPO2487 YPO2487 2788665 2789003 + putative membrane protein No significant database matches gene gene2466 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2487 YPO2488 YPO2488 YPO2488 2789116 2789367 - hypothetical protein Poor database matches. Similar to the N-terminal region of Staphylococcus aureus N315 hypothetical protein SA2158 TR:Q99RQ9 (EMBL:AP003137) (204 aa) fasta scores: E(): 5.3%2C 30.303%25 id in 66 aa gene gene2467 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2488 YPO2489 YPO2489 YPO2489 2789612 2790115 - conserved hypothetical protein Similar to Neisseria meningitidis hypothetical protein NMA0037 TR:Q9JQT0 (EMBL:AL162752) (157 aa) fasta scores: E(): 1.8e-19%2C 36.538%25 id in 156 aa gene gene2468 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2489 YPO2490 YPO2490 YPO2490 2790123 2797730 - putative hemolysin Similar to Serratia marcescens hemolysin precursor ShlA SW:HLYA_SERMA (P15320) (1608 aa) fasta scores: E(): 9.9e-27%2C 24.5%25 id in 1835 aa%2C and to Proteus mirabilis hemolysin precursor HpmA SW:HLYA_PROMI (P16466) (1577 aa) fasta scores: E(): 6.2e-30%2C 23.2%25 id in 1732 aa%2C and to Yersinia pestis YPO0599 (3295 aa) fasta scores: E(): 0%2C54.1%25 identity in 3281 aa overlap gene gene2469 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2490 YPO2491 YPO2491 YPO2491 2797874 2799562 - putative hemolysin activator protein Similar to Serratia marcescens hemolysin activator protein precursor ShlB SW:HLYB_SERMA (P15321) (557 aa) fasta scores: E(): 3.5e-26%2C 26.8%25 id in 482 aa%2C and to Proteus mirabilis hemolysin activator protein precursor HpmB SW:HLYB_PROMI (P16465) (561 aa) fasta scores: E(): 1.7e-26%2C 25.7%25 id in 529 aa%2C and to Yersinia pestis YPO0598 (562 aa) fasta scores: E(): 0%2C 81.5%25 identity in 561 aa overlap gene gene2470 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2491 YPO2492 YPO2492 YPO2492 2800214 2801179 - putative dioxygenase beta subunit Similar to Escherichia coli putative dioxygenase beta subunit YeaX SW:YEAX_ECOLI (P76254) (321 aa) fasta scores: E(): 0%2C 58.9%25 id in 321 aa%2C and to Pseudomonas putida vanillate O-demethylase oxidoreductase VanB SW:VANB_PSEPU (O54037) (315 aa) fasta scores: E(): 0%2C 36.8%25 id in 321 aa gene gene2471 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2492 YPO2493 YPO2493 YPO2493 2801275 2802399 - putative dioxygenase alpha subunit Similar to Escherichia coli putative dioxygenase alpha subunit YeaW SW:YEAW_ECOLI (P76253) (374 aa) fasta scores: E(): 0%2C 82.6%25 id in 374 aa%2C and to Beta vulgaris choline monooxygenase TR:O22553 (EMBL:AF023132) (446 aa) fasta scores: E(): 6.4e-26%2C 30.1%25 id in 366 aa gene gene2472 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2493 YPO2494 YPO2494 YPO2494 2802516 2804162 - putative BCCT-family transporter Similar to Staphylococcus xylosus choline transporter CudT TR:Q9X2L9 (EMBL:AF009415) (540 aa) fasta scores: E(): 0%2C 35.2%25 id in 511 aa%2C and to Escherichia coli probable transport protein YeaV SW:YEAV_ECOLI (P76252) (481 aa) fasta scores: E(): 0%2C 78.4%25 id in 467 aa. CDS had extra amino acids at the N-terminus in comparison to the E. coli protein gene gene2473 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2494 YPO2495 YPO2495 YPO2495 2804528 2804710 - putative membrane protein No significant database matches. Similar to Yersinia pestis YPO2189 (82 aa) fasta scores: E(): 1.7e-19%2C 93.9%25 identity in 49 aa overlap%2C YPO2518 (59 aa) fasta scores: E(): 6.6e-19%2C 87.8%25 identity in 49 aa overlap%2C YPO4069 (80 aa) fasta scores: E(): 7.3e-19%2C 80.3%25 identity in 61 aa overlap%2C YPO0545 (65 aa) fasta scores: E(): 1e-18%2C 91.7%25 identity in 48 aa overlap%2C YPO2920 (82 aa) fasta scores: E(): 1.6e-18%2C 93.8%25 identity in 48 aa overlap%2C YPO0382 (85 aa) fasta scores: E(): 2e-18%2C 97.8%25 identity in 45 aa overlap gene gene2474 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2495 YPO2496 YPO2496 YPO2496 2804779 2805876 - tartrate dehydrogenase Similar to Escherichia coli probable tartrate dehydrogenase YeaU SW:TTUC_ECOLI (P76251) (361 aa) fasta scores: E(): 0%2C 81.3%25 id in 359 aa%2C and to Pseudomonas putida tartrate dehydrogenase SW:TTUC_PSEPU (Q51945) (364 aa) fasta scores: E(): 0%2C 75.4%25 id in 358 aa gene gene2475 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2496 YPO2497 YPO2497 YPO2497 2805967 2806908 + putativeLlysR-family transcriptional regulatory protein Similar to Escherichia coli hypothetical transcriptional regulator YeaT SW:YEAT_ECOLI (P76250) (307 aa) fasta scores: E(): 0%2C 74.6%25 id in 299 aa%2C and to Escherichia coli hypothetical transcriptional regulator YgiP SW:YGIP_ECOLI (P45463) (310 aa) fasta scores: E(): 0%2C49.3%25 id in 300 aa gene gene2476 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2497 YPO2498 YPO2498 YPO2498 2807155 2808159 + putative LacI-family transcriptional regulatory protein Similar to Morganella morganii xylitol repressor TR:Q50253 (EMBL:L34345) (309 aa) fasta scores: E(): 0%2C36.1%25 id in 296 aa%2C and to Escherichia coli ribose operon repressor RbsR SW:RBSR_ECOLI (P25551) (329 aa) fasta scores: E(): 3.6e-21%2C 27.6%25 id in 319 aa gene gene2477 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2498 YPO2499 YPO2499 rbsC rbsC 2808292 2809284 - putative sugar transport system%2C permease protein Similar to Bacillus subtilis ribose transport system permease protein RbsC SW:RBSC_BACSU (P36948) (323 aa) fasta scores: E(): 0%2C 48.8%25 id in 322 aa%2C and to Escherichia coli ribose transport system permease protein RbsC SW:RBSC_ECOLI (P04984) (321 aa) fasta scores: E(): 0%2C 47.1%25 id in 325 aa gene gene2478 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2499 YPO2500 YPO2500 rbsA rbsA 2809281 2810771 - putative sugar transport system%2C ATP-binding protein Similar to Escherichia coli ribose transport ATP-binding protein RbsA SW:RBSA_ECOLI (P04983) (501 aa) fasta scores: E(): 0%2C 44.4%25 id in 496 aa%2C and to Streptomyces coelicolor ABC transporter protein%2C ATP binding component SCC57a.17 TR:Q9RDI1 (EMBL:AL136519) (517 aa) fasta scores: E(): 0%2C 44.6%25 id in 495 aa gene gene2479 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2500 YPO2501 YPO2501 rbsB rbsB 2810811 2811728 - sugar binding protein precursor Similar to Bacillus subtilis D-ribose-binding protein precursor RbsB SW:RBSB_BACSU (P36949) (305 aa) fasta scores: E(): 6.9e-28%2C 40.2%25 id in 276 aa%2C and to Bacillus halodurans possible ribose ABC transporter RbsB TR:Q9K6J7 (EMBL:AP001519) (311 aa) fasta scores: E(): 2.3e-25%2C 38.1%25 id in 268 aa gene gene2480 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2501 YPO2502 YPO2502 gutB gutB 2811903 2813129 - putative zinc-binding dehydrogenase Similar to Bacillus subtilis sorbitol dehydrogenase GutB SW:DHSO_BACSU (Q06004) (352 aa) fasta scores: E(): 4.8e-31%2C 31.3%25 id in 355 aa%2C and to Pyrococcus horikoshii hypothetical dehydrogenase PH0655 TR:O58389 (EMBL:AP000003) (348 aa) fasta scores: E(): 1.8e-30%2C 34.6%25 id in 356 aa gene gene2481 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2502 YPO2503 YPO2503 YPO2503 2813712 2814380 - hypothetical protein No significant database hits to the full length CDS. Similar to N-terminus of Campylobacter jejuni putative galactosyltransferase CJ1136 TR:Q9PNF8 (EMBL:AL139077) (390 aa) fasta scores: E(): 3.2%2C 20.4%25 id in 196 aa. CDS DNA has a low G+C content%2C 33.33%25. gene gene2482 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2503 YPO2504 YPO2504 YPO2504 2814576 2815118 - hypothetical protein No significant database hits. CDS DNA has a low G+C content%2C 38.85%25. gene gene2483 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2504 YPO2505 YPO2505 YPO2505 2815356 2816294 - putative membrane protein Similar to Bacillus halodurans hypothetical protein BH0427 TR:Q9KFQ1 (EMBL:AP001508) (301 aa) fasta scores: E(): 5.3e-26%2C 30.7%25 id in 290 aa%2C and to Vibrio cholerae hypothetical protein VCA0834 TR:Q9KLB2 (EMBL:AE004411) (317 aa) fasta scores: E(): 5.1e-22%2C 28.2%25 id in 291 aa gene gene2484 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2505 YPO2506 YPO2506 omp4 omp4 2816610 2817134 - putative outer membrane protein Similar to Serratia marcescens outer membrane protein Omp4 TR:Q54470 (EMBL:Z37157) (172 aa) fasta scores: E(): 0%2C 74.1%25 id in 174 aa%2C and to Escherichia coli outer membrane protein OmpX SW:OMPX_ECOLI (P36546) (171 aa) fasta scores: E(): 0%2C 70.7%25 id in 174 aa gene gene2485 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2506 YPO2507 YPO2507 YPO2507 2817539 2818426 + putative membrane protein Similar to Escherichia coli hypothetical integral membrane protein YbiF SW:YBIF_ECOLI (P36545) (295 aa) fasta scores: E(): 0%2C 68.0%25 id in 291 aa%2C and to Pseudomonas aeruginosa conserved hypothetical protein PA1360 TR:AAG04749 (EMBL:AE004565) (297 aa) fasta scores: E(): 0%2C64.1%25 id in 276 aa gene gene2486 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2507 YPO2508 YPO2508 YPO2508 2818442 2818939 + conserved hypothetical protein Similar to Paracoccus denitrificans hypothetical protein TR:Q51670 (EMBL:U34346) (173 aa) fasta scores: E(): 3.5e-23%2C 45.5%25 id in 154 aa%2C and to Streptomyces coelicolor putative acetyltransferase SCM11.09c TR:Q9RIV2 (EMBL:AL133278) (160 aa) fasta scores: E(): 1e-22%2C 43.5%25 id in 161 aa gene gene2487 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2508 YPO2509 YPO2509 tam tam 2818962 2819738 + puative trans-aconitate methyltransferase Similar to Escherichia coli trans-aconitate methyltransferase Tam SW:TAM_ECOLI (P76145) (251 aa) fasta scores: E(): 0%2C 55.2%25 id in 252 aa%2C and to Streptomyces coelicolor putative trans-aconitate methyltransferase SCE66.11C TR:Q9K3T2 (EMBL:AL359989) (303 aa) fasta scores: E(): 0%2C 43.3%25 id in 263 aa gene gene2488 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2509 YPO2510 YPO2510 dps dps 2819995 2820498 + putative DNA-binding protein Similar to Escherichia coli DNA-binding%2C acid and oxidative stress tolerance protein%2C Dps TR:AAD28292 (EMBL:AF140030) (167 aa) fasta scores: E(): 0%2C 79.6%25 id in 167 aa%2C and to Streptomyces coelicolor putative DNA-binding protein SCF55.20 TR:Q9R408 (EMBL:AF068267) (187 aa) fasta scores: E(): 3e-11%2C 33.1%25 id in 154 aa gene gene2489 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2510 YPO2511 YPO2511 YPO2511 2820818 2821945 + putative exported protein No significant database matches to the full length CDS. C-terminus similar to the C-terminal region of Escherichia coli hypothetical protein YcbC SW:YCBC_ECOLI (P36565) (259 aa) fasta scores: E(): 0.0017%2C 27.6%25 id in 181 aa gene gene2490 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2511 YPO2512 YPO2512 glnH glnH 2822515 2823258 + putative glutamine-binding periplasmic protein Similar to Escherichia coli glutamine-binding periplasmic protein precursor GlnH SW:GLNH_ECOLI (P10344) (248 aa) fasta scores: E(): 0%2C 85.1%25 id in 248 aa%2C and to Salmonella typhimurium high-affinity periplasmic glutamine binding protein TR:P74886 (EMBL:U73111) (248 aa) fasta scores: E(): 0%2C 87.5%25 id in 248 aa gene gene2491 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2512 YPO2513 YPO2513 glnP glnP 2823293 2823949 + putative glutamine transport system permease Similar to Escherichia coli glutamine transport system permease protein GlnP SW:GLNP_ECOLI (P10345) (219 aa) fasta scores: E(): 0%2C 83.6%25 id in 219 aa%2C and to Salmonella typhimurium glutamine transport system permease TR:P74887 (EMBL:U73111) (219 aa) fasta scores: E(): 0%2C84.0%25 id in 219 aa gene gene2492 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2513 YPO2514 YPO2514 glnQ glnQ 2823946 2824668 + putative glutamine transport ATP-binding protein Similar to Escherichia coli glutamine transport ATP-binding protein GlnQ SW:GLNQ_ECOLI (P10346) (240 aa) fasta scores: E(): 0%2C 83.8%25 id in 240 aa%2C and to Salmonella typhimurium glutamine transport ATP-binding protein GlnQ TR:P74888 (EMBL:U73111) (240 aa) fasta scores: E(): 0%2C84.6%25 id in 240 aa gene gene2493 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2514 YPO2515 YPO2515 YPO2515 2824908 2826155 - putative chemotactic transducer Similar to an internal region of Pseudomonas aeruginosa chemotactic transducer PctB TR:O32443 (EMBL:D86947) (629 aa) fasta scores: E(): 3.3e-14%2C 27.3%25 id in 395 aa%2C and to Campylobacter jejuni putative MCP-type signal transduction protein CJ1110C TR:Q9PNI4 (EMBL:AL139077) (429 aa) fasta scores: E(): 0%2C 36.4%25 id in 407 aa. The CDS appears to be truncated at the N-terminus in comparison to the Campylobacter jejuni protein and other homologues. Insertion of an IS100 element directly upstream has probably disrupted the promoter of this CDS. Effect on the function of this protein is not known. gene gene2494 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2515 YPO2516 YPO2516 y1093 y1093 2826265 2827287 + transposase for insertion sequence IS100 Similar to Escherichia coli transposase for insertion sequence element IS21 IstA SW:ISTA_ECOLI (P15025) (390 aa) fasta scores: E(): 3e-27%2C 33.1%25 id in 329 aa. Identical to the previously sequenced Yersinia pestis%2CYersinia pseudotuberculosis%2C and Escherichia coli pesticin plasmid insertion sequence transposase Y1055 TR:P74993 (EMBL:U59875) (340 aa) fasta scores: E(): 0%2C 100.0%25 id in 340 aa gene gene2495 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2516 YPO2517 YPO2517 ypmt1.57c ypmt1.57c 2827284 2828066 + insertion sequence IS100%2C ATP-binding protein Similar to Escherichia coli insertion sequence IS21 putative ATP-binding protein%2C IstB SW:ISTB_ECOLI (P15026) (265 aa) fasta scores: E(): 0%2C 47.4%25 id in 249 aa. Also almost identical to Yersinia pestis and Escherichia coli putative IS100 transposase ypmt1.57c TR:Q9R3L5 (EMBL:AL117211) (260 aa) fasta scores: E(): 0%2C 99.6%25 id in 260 aa. gene gene2496 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2517 YPO2519 YPO2519 YPO2519 2828928 2829938 - conserved hypothetical protein Similar to Escherichia coli hypothetical protein YbiN SW:YBIN_ECOLI (P75782) (308 aa) fasta scores: E(): 0%2C57.7%25 id in 307 aa%2C and to Vibrio cholerae hypothetical protein VC1614 TR:Q9KRM2 (EMBL:AE004238) (362 aa) fasta scores: E(): 0%2C 47.1%25 id in 314 aa. Possible alternative translation start site gene gene2497 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2519 YPO2521 YPO2521 YPO2521 2830226 2830486 + putative exported protein Similar to Escherichia coli hypothetical protein YbiJ SW:YBIJ_ECOLI (P41038) (86 aa) fasta scores: E(): 9.4e-15%2C 54.7%25 id in 86 aa%2C and to Escherichia coli hypothetical protein YcfR SW:YCFR_ECOLI (P75953) (85 aa) fasta scores: E(): 4.8e-14%2C 55.8%25 id in 86 aa gene gene2498 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2521 YPO2522 YPO2522 ybiB ybiB 2830868 2831827 - putative glycosyl transferase Similar to Streptomyces coelicolor anthranilate phosphoribosyltransferase 1 SC6G10.20C SW:TRD1_STRCO (O68608) (354 aa) fasta scores: E(): 8.9e-10%2C 25.4%25 id in 291 aa%2C and to Escherichia coli hypothetical protein YbiB SW:YBIB_ECOLI (P30177) (320 aa) fasta scores: E(): 0%2C 57.9%25 id in 316 aa gene gene2499 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2522 YPO2523 YPO2523 menE menE 2831893 2833308 - putative O-succinylbenzoic acid--CoA ligase Similar to Escherichia coli O-succinylbenzoic acid--CoA ligase MenE SW:MENE_ECOLI (P37353) (451 aa) fasta scores: E(): 0%2C 55.2%25 id in 451 aa%2C and to Haemophilus influenzae O-succinylbenzoic acid--CoA ligase MenE SW:MENE_HAEIN (P44565) (452 aa) fasta scores: E(): 0%2C 47.0%25 id in 464 aa gene gene2500 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2523 YPO2524 YPO2524 menC menC 2833296 2834267 - putative O-succinylbenzoate-CoA synthase Similar to Escherichia coli O-succinylbenzoate-CoA synthase MenC SW:MENC_ECOLI (P29208) (320 aa) fasta scores: E(): 0%2C 66.2%25 id in 317 aa%2C and to Vibrio cholerae O-succinylbenzoate-CoA synthase VC1972 TR:Q9KQM6 (EMBL:AE004272) (332 aa) fasta scores: E(): 0%2C 59.2%25 id in 326 aa gene gene2501 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2524 YPO2525 YPO2525 menB menB 2834267 2835124 - naphthoate synthase Similar to Escherichia coli naphthoate synthase menB SW:MENB_ECOLI (P27290) (285 aa) fasta scores: E(): 0%2C 93.3%25 id in 285 aa%2C and to Pasteurella multocida possible naphthoate synthase MenB TR:AAK03180 (EMBL:AE006150) (285 aa) fasta scores: E(): 0%2C 86.7%25 id in 285 aa gene gene2502 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2525 YPO2526 YPO2526 YPO2526 2835138 2835956 - conserved hypothetical protein Similar to Pseudomonas aeruginosa esterase (probable lipase) PA2949 TR:Q9KJG6 (EMBL:AF170828) (315 aa) fasta scores: E(): 7.8e-05%2C 28.5%25 id in 253 aa%2C and to Escherichia coli hypothetical protein YfbB TR:P76932 (EMBL:D90857) (270 aa) fasta scores: E(): 0%2C 50.8%25 id in 246 aa gene gene2503 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2526 YPO2527 YPO2527 menD menD 2835953 2837656 - menaquinone biosynthesis protein Similar to Escherichia coli menaquinone biosynthesis protein%2C 2-succinyl-6-hydroxy-2%2C4-cyclohexadiene-1-carboxylate synthase%2C MenD SW:MEND_ECOLI (P17109) (556 aa) fasta scores: E(): 0%2C 69.8%25 id in 560 aa%2C and to Haemophilus influenzae menaquinone biosynthesis protein MenD SW:MEND_HAEIN (P44612) (568 aa) fasta scores: E(): 0%2C 48.2%25 id in 571 aa gene gene2504 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2527 YPO2528 YPO2528 menF menF 2837884 2839251 - menaquinone-specific isochorismate synthase Similar to Escherichia coli menaquinone-specific isochorismate synthase MenF SW:MENF_ECOLI (P38051) (431 aa) fasta scores: E(): 0%2C 51.7%25 id in 449 aa%2C and to Vibrio cholerae menaquinone-specific isochorismate synthase VC1976 TR:Q9KQM2 (EMBL:AE004272) (435 aa) fasta scores: E(): 0%2C44.7%25 id in 409 aa gene gene2505 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2528 YPO2530 YPO2530 YPO2530 2839779 2840423 - conserved hypothetical protein Similar to Rhizobium leguminosarum rhizosphere-expressed protein RhiA SW:RHIA_RHILV (Q03313) (231 aa) fasta scores: E(): 1.8e-29%2C 40.3%25 id in 206 aa%2Cand to Microcystis aeruginosa microcystin dependent protein MdpA TR:Q9L3N2 (EMBL:AJ271976) (329 aa) fasta scores: E(): 0.00018%2C 25.9%25 id in 197 aa gene gene2506 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2530 YPO2531 YPO2531 elaB elaB 2840978 2841286 - putative membrane protein Similar to Escherichia coli hypothetical protein ElaB SW:ELAB_ECOLI (P52084) (101 aa) fasta scores: E(): 1.5e-14%2C 50.0%25 id in 94 aa%2C and to Escherichia coli hypothetical protein YqjD SW:YQJD_ECOLI (P42617) (101 aa) fasta scores: E(): 6.1e-12%2C 46.7%25 id in 92 aa gene gene2507 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2531 YPO2532 YPO2532 YPO2532 2841934 2842146 - hypothetical protein no significant database hits gene gene2508 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2532 YPO2533 YPO2533 edd edd 2842212 2844089 - phosphogluconate dehydratase Similar to Escherichia coli phosphogluconate dehydratase Edd SW:EDD_ECOLI (P25530) (603 aa) fasta scores: E(): 0%2C 75.8%25 id in 623 aa%2C and to Pseudomonas aeruginosa phosphogluconate dehydratase Edd SW:EDD_PSEAE (P31961) (610 aa) fasta scores: E(): 0%2C 60.9%25 id in 622 aa gene gene2509 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2533 YPO2534 YPO2534 YPO2534 2844093 2844608 - conserved hypothetical protein Similar to Rhizobium meliloti hypothetical protein YpmI SW:YPMI_RHIME (P29953) (164 aa) fasta scores: E(): 1e-21%2C 39.5%25 id in 162 aa%2C and to Zymomonas mobilis hypothetical protein ZM10ORF2 TR:Q9XBS9 (EMBL:AF157493) (186 aa) fasta scores: E(): 1.3e-20%2C 39.2%25 id in 166 aa gene gene2510 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2534 YPO2535 YPO2535 YPO2535 2844638 2845969 - putative sugar transporter Similar to Burkholderia cepacia phthalate transporter OphD TR:Q9RPP3 (EMBL:AF152094) (448 aa) fasta scores: E(): 0%2C 28.2%25 id in 429 aa%2C and to Pseudomonas aeruginosa probable 2-ketogluconate transporter PA2262 TR:AAG05650 (EMBL:AE004652) (435 aa) fasta scores: E(): 0%2C32.3%25 id in 427 aa gene gene2511 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2535 YPO2536 YPO2536 YPO2536 2846500 2847450 - putative D-isomer specific 2-hydroxyacid dehydrogenase family protein Similar to Hyphomicrobium methylovorum hydroxypyruvate reductase TR:Q59463 (EMBL:D31857) (322 aa) fasta scores: E(): 2.5e-26%2C 30.3%25 id in 320 aa%2C and to the eukaryotic Arabidopsis thaliana putative D-isomer specific 2-hydroxyacid dehydrogenase F19K16.17 TR:Q9SQP4 (EMBL:AC011717) (313 aa) fasta scores: E(): 0%2C 41.0%25 id in 307 aa gene gene2512 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2536 YPO2537 YPO2537 YPO2537 2847916 2848908 - putative LacI-family transcriptional regulatory protein Similar to Escherichia coli L-idonate regulatory protein IdnR SW:IDNR_ECOLI (P39343) (332 aa) fasta scores: E(): 0%2C 49.1%25 id in 332 aa%2C and to Escherichia coli gluconate utilization system Gnt-I transcriptional repressor GntR SW:GNTR_ECOLI (P46860) (331 aa) fasta scores: E(): 0%2C 44.4%25 id in 331 aa gene gene2513 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2537 YPO2538 YPO2538 YPO2538 2849377 2850660 + putative lipoprotein Similar to Escherichia coli hypothetical protein TR:P76130 (EMBL:AE000246) (439 aa) fasta scores: E(): 0%2C60.0%25 id in 422 aa%2C and to Bacillus subtilis hypothetical protein YngK TR:O35015 (EMBL:Z99113) (510 aa) fasta scores: E(): 0%2C 42.8%25 id in 367 aa gene gene2514 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2538 YPO2539 YPO2539 idnO idnO 2851419 2852183 + gluconate 5-dehydrogenase Similar to Escherichia coli gluconate 5-dehydrogenase IdnO SW:IDNO_ECOLI (P39345) (254 aa) fasta scores: E(): 0%2C 79.1%25 id in 254 aa%2C and to Gluconobacter oxydans gluconate 5-dehydrogenase SW:GNO_GLUOX (P50199) (256 aa) fasta scores: E(): 0%2C 56.3%25 id in 252 aa gene gene2515 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2539 YPO2540 YPO2540 gntV gntV 2852232 2852768 + putative thermosensitive gluconokinase Similar to Escherichia coli thermosensitive gluconokinase IdnK SW:IDNK_ECOLI (P39208) (187 aa) fasta scores: E(): 0%2C 59.1%25 id in 176 aa%2C and to Vibrio cholerae thermoresistant gluconokinase VC0287 TR:Q9KV70 (EMBL:AE004117) (171 aa) fasta scores: E(): 0%2C 60.2%25 id in 166 aa%2C and to Escherichia coli thermoresistant gluconokinase GntK SW:GNTK_ECOLI (P46859) (175 aa) fasta scores: E(): 1.5e-31%2C 51.3%25 id in 160 aa. Similar to YPO3953 (66.3%25 identity in 160 aa overlap). gene gene2516 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2540 YPO2541 YPO2541 YPO2541 2852846 2853313 + conserved hypothetical protein Similar to Escherichia coli hypothetical protein YiaL SW:YIAL_ECOLI (P37673) (155 aa) fasta scores: E(): 5.8e-12%2C 34.0%25 id in 141 aa%2C and to Escherichia coli protein Yjgk SW:YJGK_ECOLI (P39335) (150 aa) fasta scores: E(): 6.4e-11%2C 34.5%25 id in 142 aa gene gene2517 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2541 YPO2542 YPO2542 YPO2542 2853651 2854841 - hypothetical protein no significant database hits to the full length CDS. Similar to internal region of Bacillus subtilis hypothetical proteink protein YkoU TR:O34398 (EMBL:Z99110) (611 aa) fasta scores: E(): 4.4%2C 21.4%25 id in 215 aa. CDS DNA has a low G+C content%2C 35.68%25. gene gene2518 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2542 YPO2543 YPO2543 nuoN nuoN 2855077 2856540 - NADH dehydrogenase I chain N Similar to Escherichia coli NADH dehydrogenase I chain N NuoN SW:NUON_ECOLI (P33608) (425 aa) fasta scores: E(): 0%2C 79.9%25 id in 427 aa%2C and to Pseudomonas aeruginosa NADH dehydrogenase I chain N NuoN TR:AAG06037 (EMBL:AE004693) (486 aa) fasta scores: E(): 0%2C 62.7%25 id in 482 aa. CDS is the same length as the P. aeruginosa orthologue%2C but had an N-termial extention in comparison to the E. coli orthologue. Possible alternative translational start. gene gene2519 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2543 YPO2544 YPO2544 nuoM nuoM 2856547 2858079 - NADH dehydrogenase I chain M Similar to Escherichia coli SW:NUOM_ECOLI (P31978) (509 aa) fasta scores: E(): 0%2C 85.6%25 id in 513 aa%2C and to Pseudomonas aeruginosa NADH dehydrogenase I chain M NuoM TR:AAG06036 (EMBL:AE004693) (509 aa) fasta scores: E(): 0%2C74.9%25 id in 502 aa gene gene2520 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2544 YPO2545 YPO2545 nuoL nuoL 2858119 2859963 - NADH dehydrogenase I chain L Similar to Escherichia coli NADH dehydrogenase I chain L NuoL SW:NUOL_ECOLI (P33607) (613 aa) fasta scores: E(): 0%2C 79.6%25 id in 613 aa%2C and to Pseudomonas aeruginosa NADH dehydrogenase I chain L NuoL TR:AAG06035 (EMBL:AE004693) (615 aa) fasta scores: E(): 0%2C 70.7%25 id in 615 aa gene gene2521 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2545 YPO2546 YPO2546 nuoK nuoK 2859960 2860262 - NADH dehydrogenase i chain k Similar to Escherichia coli NADH dehydrogenase I chain K NuoK SW:NUOK_ECOLI (P33606) (100 aa) fasta scores: E(): 0%2C 89.0%25 id in 100 aa%2C and to Pseudomonas aeruginosa NADH dehydrogenase I chain K NuoK TR:AAG06034 (EMBL:AE004693) (102 aa) fasta scores: E(): 1.9e-29%2C 77.8%25 id in 99 aa gene gene2522 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2546 YPO2547 YPO2547 nuoJ nuoJ 2860259 2860804 - NADH dehydrogenase I chain J Similar to Escherichia coli NADH dehydrogenase I chain J NuoJ SW:NUOJ_ECOLI (P33605) (184 aa) fasta scores: E(): 0%2C 76.1%25 id in 184 aa%2C and to Pseudomonas aeruginosa NADH dehydrogenase I chain J NuoJ TR:AAG06033 (EMBL:AE004693) (166 aa) fasta scores: E(): 0%2C 72.8%25 id in 162 aa gene gene2523 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2547 YPO2548 YPO2548 nuoI nuoI 2860817 2861359 - NADH Dehydrogenase I chain I Similar to Escherichia coli NADH dehydrogenase I chain I NuoI SW:NUOI_ECOLI (P33604) (180 aa) fasta scores: E(): 0%2C 95.0%25 id in 180 aa%2C and to Pseudomonas aeruginosa NADH dehydrogenase I chain I NuoI TR:AAG06032 (EMBL:AE004693) (182 aa) fasta scores: E(): 0%2C 85.1%25 id in 175 aa gene gene2524 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2548 YPO2549 YPO2549 nuoH nuoH 2861374 2862351 - NADH dehydrogenase I chain H Similar to Escherichia coli NADH dehydrogenase I chain H NuoH SW:NUOH_ECOLI (P33603) (325 aa) fasta scores: E(): 0%2C 92.3%25 id in 325 aa%2C and to Salmonella typhimurium NADH dehydrogenase I chain H NuoH SW:NUOH_SALTY (Q60010) (325 aa) fasta scores: E(): 0%2C 91.4%25 id in 325 aa gene gene2525 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2549 YPO2550 YPO2550 nuoG nuoG 2862348 2865092 - NADH dehydrogenase I chain G Similar to Salmonella typhimurium NADH dehydrogenase I chain G NuoG SW:NUOG_SALTY (P33900) (907 aa) fasta scores: E(): 0%2C 80.7%25 id in 913 aa%2C and to Escherichia coli NADH dehydrogenase I chain G NuoG SW:NUOG_ECOLI (P33602) (907 aa) fasta scores: E(): 0%2C 79.8%25 id in 913 aa gene gene2526 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2550 YPO2551 YPO2551 nuoF nuoF 2865179 2866564 - NADH dehydrogenase I chain F Similar to Escherichia coli NADH dehydrogenase I chain F NuoF SW:NUOF_ECOLI (P31979) (445 aa) fasta scores: E(): 0%2C 89.0%25 id in 453 aa%2C and to Salmonella typhimurium NADH dehydrogenase I chain F NuoF SW:NUOF_SALTY (P33901) (431 aa) fasta scores: E(): 0%2C 92.0%25 id in 401 aa gene gene2527 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2551 YPO2552 YPO2552 nuoE nuoE 2866561 2867079 - NADH dehydrogenase I chain E Similar to Escherichia coli NADH dehydrogenase I chain E NuoE SW:NUOE_ECOLI (P33601) (166 aa) fasta scores: E(): 0%2C 89.1%25 id in 156 aa%2C and to Salmonella typhimurium NADH dehydrogenase I chain E NuoE SW:NUOE_SALTY (P33903) (166 aa) fasta scores: E(): 0%2C 89.7%25 id in 156 aa gene gene2528 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2552 YPO2553 YPO2553 nuoD nuoD 2867127 2868923 - NADH dehydrogenase I chain C/D Similar to Escherichia coli NADH dehydrogenase I chain C/D NuoD SW:NUCD_ECOLI (P33599) (600 aa) fasta scores: E(): 0%2C 88.5%25 id in 599 aa%2C and to Pseudomonas aeruginosa NADH dehydrogenase I chain C%2CD NuoD TR:AAG06027 (EMBL:AE004692) (593 aa) fasta scores: E(): 0%2C 78.5%25 id in 578 aa gene gene2529 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2553 YPO2554 YPO2554 nuoB nuoB 2869064 2869741 - NADH dehydrogenase I chain B Similar to Escherichia coli NADH dehydrogenase I chain B NuoB SW:NUOB_ECOLI (P33598) (220 aa) fasta scores: E(): 0%2C 90.2%25 id in 225 aa%2C and to Erwinia carotovora NADH dehydrogenase I chain B NuoB SW:NUOB_ERWCA (O85274) (224 aa) fasta scores: E(): 0%2C 93.3%25 id in 225 aa gene gene2530 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2554 YPO2555 YPO2555 nuoA nuoA 2869843 2870337 - NADH dehydrogenase I chain A Similar to Escherichia coli NADH dehydrogenase I chain A NuoA SW:NUOA_ECOLI (P33597) (147 aa) fasta scores: E(): 0%2C 78.9%25 id in 142 aa%2C and to Erwinia carotovora NADH dehydrogenase I chain A NuoA SW:NUOA_ERWCA (O85273) (146 aa) fasta scores: E(): 0%2C 78.1%25 id in 146 aa gene gene2531 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2555 YPO2556 YPO2556 hexA hexA 2871021 2871953 - LysR-family transcriptional regulatory protein Similar to Erwinia chrysanthemi pectinase gene transcriptional regulator PecT SW:PECT_ERWCH (P52662) (316 aa) fasta scores: E(): 0%2C 70.6%25 id in 293 aa%2C and to Erwinia carotovora subsp. carotovora regulator of motility and virulence determinants HexA TR:O85272 (EMBL:AF057063) (316 aa) fasta scores: E(): 0%2C 68.1%25 id in 298 aa gene gene2532 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2556 YPO2557 YPO2557 YPO2557 2872404 2872676 - hypothetical protein no significant database hits. CDS DNA has a low G+C content%2C 35.16%25. gene gene2533 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2557 YPO2558 YPO2558 aat aat 2872809 2874023 + probable aminotransferase Similar to Methylobacillus flagellatum aspartate aminotransferase Aat TR:Q9RAN0 (EMBL:L78665) (429 aa) fasta scores: E(): 0%2C 62.4%25 id in 404 aa%2C and to Escherichia coli probable aminotransferase YfbQ SW:YFBQ_ECOLI (P77727) (405 aa) fasta scores: E(): 0%2C 89.6%25 id in 404 aa gene gene2534 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2558 YPO2559 YPO2559 YPO2559 2874174 2874767 + conserved hypothetical protein Similar to Escherichia coli hypothetical protein B2291 TR:P76491 (EMBL:AE000318) (199 aa) fasta scores: E(): 0%2C 80.4%25 id in 194 aa%2C and to Bacillus megaterium oxetanocin A biosynthetic enzyme OxsA TR:O24769 (EMBL:AB005787) (194 aa) fasta scores: E(): 8.2e-11%2C 26.6%25 id in 188 aa gene gene2535 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2559 YPO2560 YPO2560 YPO2560 2874814 2875083 - putative exported protein No significant database matches gene gene2536 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2560 YPO2561 YPO2561 YPO2561 2875110 2876945 - putative ion transport protein Similar to Escherichia coli hypothetical protein YfbS SW:YFBS_ECOLI (P77741) (610 aa) fasta scores: E(): 0%2C71.6%25 id in 610 aa%2C and to Pasteurella multocida hypothetical protein PM1999 TR:AAK04083 (EMBL:AE006236) (618 aa) fasta scores: E(): 0%2C 60.4%25 id in 608 aa gene gene2537 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2561 YPO2562 YPO2562 YPO2562 2877234 2877896 - putative haloacid dehalogenase-like hydrolase Similar to Saccharomyces cerevisiae DL-glycerol-3-phosphatase GPP2 SW:GPP2_YEAST (P40106) (250 aa) fasta scores: E(): 4.7e-15%2C 33.0%25 id in 212 aa%2C and to Escherichia coli hypothetical protein YfbT SW:YFBT_ECOLI (P77625) (222 aa) fasta scores: E(): 0%2C 72.4%25 id in 214 aa gene gene2538 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2562 YPO2563 YPO2563 YPO2563 2878055 2878549 - conserved hypothetical protein Similar to Escherichia coli hypothetical protein YbfU SW:YFBU_ECOLI (P76492) (164 aa) fasta scores: E(): 0%2C80.5%25 id in 164 aa%2C and to Vibrio cholerae hypothetical protein VC1871 TR:Q9KQX6 (EMBL:AE004263) (170 aa) fasta scores: E(): 0%2C 60.2%25 id in 166 aa gene gene2539 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2563 YPO2564 YPO2564 YPO2564 2878857 2879312 - conserved hypothetical protein Similar to Escherichia coli hypothetical protein B2295 TR:P77496 (EMBL:AE000318) (151 aa) fasta scores: E(): 0%2C 70.2%25 id in 151 aa%2C and to Vibrio cholerae hypothetical protein VC1099 TR:Q9KT06 (EMBL:AE004191) (152 aa) fasta scores: E(): 1.7e-24%2C 47.3%25 id in 146 aa gene gene2540 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2564 YPO2565 YPO2565 YPO2565 2879553 2879744 + hypothetical protein No significant database matches gene gene2541 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2565 YPO2566 YPO2566 ack ack 2879734 2880936 + acetate kinase Similar to Escherichia coli acetate kinase AckA SW:ACKA_ECOLI (P15046) (400 aa) fasta scores: E(): 0%2C 88.5%25 id in 400 aa%2C and to Vibrio cholerae probable acetate kinase VC1098 TR:Q9KT07 (EMBL:AE004190) (398 aa) fasta scores: E(): 0%2C 70.9%25 id in 398 aa gene gene2542 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2566 YPO2567 YPO2567 pta pta 2881104 2883257 + phosphate acetyltransferase Similar to Escherichia coli phosphate acetyltransferase Pta SW:PTA_ECOLI (P39184) (713 aa) fasta scores: E(): 0%2C 87.2%25 id in 711 aa%2C and to Vibrio cholerae probable phosphate acetyltransferase VC1097 TR:Q9KT08 (EMBL:AE004190) (714 aa) fasta scores: E(): 0%2C 75.9%25 id in 711 aa gene gene2543 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2567 YPO2568 YPO2568 YPO2568 2883523 2884557 - LacI-family transcriptional regulatory protein Similar to Escherichia coli gluconate utilization system Gnt-I transcriptional repressor GntR SW:GNTR_ECOLI (P46860) (331 aa) fasta scores: E(): 3.3e-29%2C 33.0%25 id in 306 aa%2C and to Escherichia coli L-idonate regulatory protein IdnR SW:IDNR_ECOLI (P39343) (332 aa) fasta scores: E(): 1.7e-28%2C 29.4%25 id in 323 aa gene gene2544 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2568 YPO2569 YPO2569 YPO2569 2884924 2885367 + phosphotransferase enzyme II%2C A component Similar to Escherichia coli phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS)%2C mannitol permease IIa protein%2C CmtB SW:PTYA_ECOLI (P32058) (147 aa) fasta scores: E(): 9.8e-18%2C42.3%25 id in 137 aa%2C and to Vibrio cholerae PTS system%2C IIa component VCA0245 TR:Q9KMS5 (EMBL:AE004364) (168 aa) fasta scores: E(): 1.5e-16%2C 37.4%25 id in 147 aa gene gene2545 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2569 YPO2570 YPO2570 YPO2570 2885536 2885775 + phosphotransferase enzyme II%2C B component (pseudogene) Similar to Escherichia coli unknown pentitol phosphotransferase enzyme II%2C B component SgaB SW:PTXB_ECOLI (P39302) (101 aa) fasta scores: E(): 0.014%2C29.1%25 id in 79 aa%2C and to Bacillus halodurans hypothetical protein BH0222 TR:Q9KG90 (EMBL:AP001507) (89 aa) fasta scores: E(): 2.3e-08%2C 40.3%25 id in 77 aa. This CDS is disrupted by the insertion of IS285 element. The insertion occurred near the C-terminus. It is not clear whether this insertion affects the function of the protein. pseudogene gene2546 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2570 YPO2571 YPO2571 y1062 y1062 2885812 2887020 - transposase for the IS285 insertion element Previously sequenced Yersinia pestis transposase Y1062 or Ypmt1.80C TR:O68779 (EMBL:AF053947) (402 aa) fasta scores: E(): 0%2C 100.0%25 id in 402 aa. gene gene2547 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2571 YPO2572 YPO2572 pbpC pbpC 2887093 2887932 - bifunctional penicillin-binding protein 1C (pseudogene) Similar to Escherichia coli bifunctional penicillin-binding protein 1C%2C PbpC SW:PBPC_ECOLI (P76577) (770 aa) fasta scores: E(): 5.8e-25%2C 35.4%25 id in 285 aa%2Cand to Xylella fastidiosa bifunctional penicillin binding protein 1C%2C XF2235 TR:Q9PBA9 (EMBL:AE004036) (796 aa) fasta scores: E(): 1.1e-24%2C 39.9%25 id in 263 aa. The CDS is truncated%2C at codon 280%2C by the insertion of the downstream IS285 element. pseudogene gene2548 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2572 YPO2573 YPO2573 YPO2573 2887989 2894003 - putative membrane protein No significant database matches to the full length CDS. Some similarity to the internal regions of Rickettsia prowazekii hypothetical protein RP558 TR:Q9ZCZ3 (EMBL:AJ235272) (1077 aa) fasta scores: E(): 0%2C 28.2%25 id in 1027 aa%2C and to Xylella fastidiosa hypothetical protein XF1252 TR:Q9PDX7 (EMBL:AE003959) (1641 aa) fasta scores: E(): 0%2C 22.7%25 id in 1680 aa gene gene2549 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2573 YPO2574 YPO2574 YPO2574 2894374 2894928 - putative membrane protein No significant database matches to the full length CDS gene gene2550 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2574 YPO2576 YPO2576 YPO2576 2895617 2896471 - conserved hypothetical protein Similar to Pseudomonas aeruginosa hypothetical protein PA5506 TR:AAG08891 (EMBL:AE004963) (285 aa) fasta scores: E(): 2.9e-10%2C 25.8%25 id in 283 aa%2C and to Bacillus halodurans hypothetical protein BH2940 TR:Q9K8R3 (EMBL:AP001517) (284 aa) fasta scores: E(): 7.1e-13%2C 24.4%25 id in 270 aa gene gene2551 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2576 YPO2577 YPO2577 YPO2577 2896777 2898303 + putative aldehyde dehydrogenase Similar to Streptomyces coelicolor methylmalonic acid semialdehyde dehydrogenase MsdA TR:Q53935 (EMBL:L48550) (500 aa) fasta scores: E(): 0%2C 55.3%25 id in 503 aa%2C and to Pseudomonas aeruginosa probable aldehyde dehydrogenase PA0130 TR:AAG03520 (EMBL:AE004451) (497 aa) fasta scores: E(): 0%2C 59.4%25 id in 507 aa gene gene2552 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2577 YPO2578 YPO2578 YPO2578 2898317 2900263 + putative thiamine pyrophosphate-dependent protein Similar to Spirulina platensis acetohydroxy acid synthase IlvX TR:Q59950 (EMBL:M75906) (612 aa) fasta scores: E(): 6.4e-17%2C 28.0%25 id in 615 aa%2C and to Bacillus halodurans possible myo-inositol catabolism protein IolD TR:Q9KAG9 (EMBL:AP001515) (637 aa) fasta scores: E(): 0%2C54.3%25 id in 644 aa gene gene2553 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2578 YPO2579 YPO2579 YPO2579 2900557 2901542 + putative myo-inositol dehydrogenase (pseudogene) Similar to Rhizobium meliloti myo-inositol 2-dehydrogenase IdhA SW:MI2D_RHIME (O68965) (330 aa) fasta scores: E(): 0%2C 45.7%25 id in 324 aa%2C and to Rhizobium fredii myo-inositol dehydrogenase TR:AAG44816 (EMBL:AF274867) (329 aa) fasta scores: E(): 0%2C 46.0%25 id in 324 aa. Contains a frameshift after codon 153. The frameshift occurs within a homopolymeric tract of 7C. The sequence has been checked and is believed to be correct pseudogene gene2554 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2579 YPO2581 YPO2581 YPO2581 2901668 2902597 + putative sugar-binding periplasmic protein Similar to Bacillus subtilis D-ribose-binding protein precursor RbsB SW:RBSB_BACSU (P36949) (305 aa) fasta scores: E(): 2e-24%2C 34.1%25 id in 264 aa%2C and to Escherichia coli D-ribose-binding periplasmic protein precursor Rbsb SW:RBSB_ECOLI (P02925) (296 aa) fasta scores: E(): 1.1e-22%2C 32.3%25 id in 266 aa gene gene2555 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2581 YPO2582 YPO2582 YPO2582 2902646 2904193 + sugar transport ATP-binding protein Similar to Escherichia coli D-allose transport ATP-binding protein AlsA SW:ALSA_ECOLI (P32721) (510 aa) fasta scores: E(): 0%2C 38.7%25 id in 514 aa%2C and to Thermotoga maritima possible ribose ABC transporter%2C ATP-binding protein TM0956 TR:Q9X051 (EMBL:AE001758) (523 aa) fasta scores: E(): 0%2C 42.9%25 id in 503 aa gene gene2556 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2582 YPO2583 YPO2583 YPO2583 2904205 2905233 + sugar transport system permease protein Similar to Escherichia coli ribose transport system permease protein RbsC SW:RBSC_ECOLI (P04984) (321 aa) fasta scores: E(): 0%2C 45.9%25 id in 307 aa%2C and to Vibrio cholerae possible ribose ABC transporter%2C permease protein VCA0129 TR:Q9KN36 (EMBL:AE004354) (332 aa) fasta scores: E(): 0%2C44.6%25 id in 307 aa gene gene2557 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2583 YPO2584 YPO2584 YPO2584 2905257 2906390 + conserved hypothetical protein Similar to Streptomyces coelicolor putative oxidoreductase SC8F11.14c TR:Q9KZG4 (EMBL:AL353864) (387 aa) fasta scores: E(): 0%2C 36.6%25 id in 380 aa%2C and to Bacillus halodurans hypothetical protein BH0710 TR:Q9KEY9 (EMBL:AP001509) (388 aa) fasta scores: E(): 7.3e-32%2C 35.6%25 id in 390 aa gene gene2558 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2584 YPO2585 YPO2585 YPO2585 2906422 2908392 + putative carbohydrate kinase N-terminus similar to Bacillus subtilis inositol utilization protein IolC SW:IOLC_BACSU (P42414) (325 aa) fasta scores: E(): 1.4e-22%2C 31.3%25 id in 336 aa%2C and to Streptomyces coelicolor putative carbohydrate kinase SC8F11.04C TR:Q9KZH4 (EMBL:AL353864) (320 aa) fasta scores: E(): 1.7e-18%2C 36.7%25 id in 332 aa. CDS has an extended C-terminus with no significant database hits gene gene2559 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2585 YPO2586 YPO2586 YPO2586 2908545 2909465 + conserved hypothetical protein Similar to Rhizobium meliloti rhizopine catabolism protein MocC SW:MOCC_RHIME (P49304) (325 aa) fasta scores: E(): 0%2C 52.7%25 id in 294 aa%2C and to Rhizobium leguminosarum inositol degradative protein MocC TR:O85770 (EMBL:AF076240) (295 aa) fasta scores: E(): 0%2C 53.6%25 id in 293 aa gene gene2560 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2586 YPO2587 YPO2587 YPO2587 2909475 2910290 + conserved hypothetical protein Similar to Erwinia chrysanthemi 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase KduI SW:KDUI_ERWCH (Q05529) (278 aa) fasta scores: E(): 0.62%2C24.7%25 id in 243 aa%2C and to Bacillus subtilis inositol utilization protein IolB SW:IOLB_BACSU (P42413) (271 aa) fasta scores: E(): 0%2C 48.5%25 id in 268 aa gene gene2561 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2587 YPO2588 YPO2588 YPO2588 2910755 2912650 + putative ABC transport protein Similar to Rickettsia prowazekii mitochondrial transporter ATM1 protein RP205 TR:Q9ZDW0 (EMBL:AJ235270) (609 aa) fasta scores: E(): 0%2C 53.0%25 id in 585 aa%2C and to the C-terminal regions of eukaryotic Drosophila melanogaster hypothetical protein CG7955 TR:Q9W0C5 (EMBL:AE003472) (606 aa) fasta scores: E(): 0%2C 46.1%25 id in 597 aa. Similar to the C-terminal region of Homo sapiens ABC transporter ABCB6 TR:Q9NP58 (EMBL:AJ289233) (842 aa) fasta scores: E(): 0%2C 44.9%25 id in 599 aa. All the database matches%2C bar one%2C are to eukaryotic proteins. gene gene2562 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2588 YPO2589 YPO2589 YPO2589 2912666 2912953 - conserved hypothetical protein Similar to Neisseria meningitidis hypothetical protein NMA1764 TR:Q9JTI2 (EMBL:AL162757) (97 aa) fasta scores: E(): 1.8e-08%2C 33.3%25 id in 90 aa gene gene2563 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2589 YPO2590 YPO2590 YPO2590 2913396 2913590 + hypothetical protein no significant database hits gene gene2564 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2590 YPO2591 YPO2591 YPO2591 2913608 2913790 - hypothetical protein no significant database hits gene gene2565 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2591 YPO2592 YPO2592 YPO2592 2913972 2914937 - putative membrane protein Similar to Streptococcus pneumoniae transmembrane protein CAP33FM TR:O86896 (EMBL:AJ006986) (332 aa) fasta scores: E(): 9.7e-14%2C 25.4%25 id in 335 aa%2C and to internal region of Campylobacter jejuni probable enterochelin uptake permease CeuC TR:Q9PMU6 (EMBL:AL139078) (312 aa) fasta scores: E(): 0.13%2C 23.3%25 id in 296 aa gene gene2566 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2592 YPO2593 YPO2593 YPO2593 2915360 2915977 + putative LuxR-family regulatory proteins Similar to Salmonella typhimurium fimbriae W protein FimW SW:FIMW_SALTY (P37928) (198 aa) fasta scores: E(): 0.0066%2C 21.9%25 id in 178 aa%2C and to C-terminus of Erwinia amylovora activator of exopolysaccharide synthesis%2C RcsB TR:P96320 (EMBL:Y09848) (215 aa) fasta scores: E(): 0.0003%2C43.7%25 id in 71 aa gene gene2567 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2593 YPO2594 YPO2594 YPO2594 2916297 2916668 - hypothetical protein no significant database hits gene gene2568 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2594 YPO2595 YPO2595 cspE cspE 2917054 2917263 + putative cold shock protein Similar to Escherichia coli probable cold shock protein CspE SW:CSPE_ECOLI (P36997) (68 aa) fasta scores: E(): 1e-25%2C 94.1%25 id in 68 aa%2C and to Vibrio cholerae hypothetical protein TR:AAC72388 (EMBL:AF098260) (69 aa) fasta scores: E(): 3.1e-26%2C 94.2%25 id in 69 aa. Similar to YPO1746 (84.1%25 identity in 69 aa overlap)%2C YPO1655 (83.3%25 identity in 66 aa overlap)%2C YPO3644 (73.6%25 identity in 72 aa overlap)%2C YPO3643 (72.2%25 identity in 72 aa overlap)%2CYPO2659 (63.9%25 identity in 72 aa overlap) and YPO1398 (53.6%25 identity in 69 aa overlap). gene gene2569 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2595 YPO2596 YPO2596 crcB crcB 2917686 2918069 - putative membrane protein Similar to Escherichia coli hypothetical protein CrcB SW:CRCB_ECOLI (P37002) (127 aa) fasta scores: E(): 8.1e-30%2C 65.0%25 id in 120 aa%2C and to Pseudomonas aeruginosa conserved hypothetical protein PA4383 TR:AAG07771 (EMBL:AE004854) (127 aa) fasta scores: E(): 5.4e-24%2C 53.3%25 id in 122 aa gene gene2570 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2596 YPO2597 YPO2597 tatE tatE 2918636 2918893 + sec-independent protein translocase protein Similar to Escherichia coli sec-independent%2Ctwin-arginine translocation (Tat) protein%2C TatE SW:TATE_ECOLI (P25895) (67 aa) fasta scores: E(): 1.4e-09%2C62.9%25 id in 62 aa%2C and to Escherichia coli sec-independent%2Ctwin-arginine translocation (Tat) protein%2C TatA SW:TATA_ECOLI (O65938) (89 aa) fasta scores: E(): 5.4e-09%2C40.5%25 id in 84 aa gene gene2571 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2597 YPO2598 YPO2598 lip lip 2919074 2920039 - lipoic acid synthetase Similar to Escherichia coli lipoic acid synthetase LipA SW:LIPA_ECOLI (P25845) (321 aa) fasta scores: E(): 0%2C92.2%25 id in 321 aa%2C and to Vibrio cholerae lipoic acid synthetase VC0943 TR:Q9KTF9 (EMBL:AE004177) (321 aa) fasta scores: E(): 0%2C 81.6%25 id in 321 aa gene gene2572 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2598 YPO2599 YPO2599 lipB lipB 2920232 2920933 - lipoate-protein ligase B Similar to Escherichia coli lipoate-protein ligase B LipB SW:LIPB_ECOLI (P30976) (191 aa) fasta scores: E(): 0%2C68.5%25 id in 184 aa%2C and to Vibrio cholerae lipoate-protein ligase B TR:Q9KTF8 (EMBL:AE004177) (219 aa) fasta scores: E(): 0%2C 66.8%25 id in 205 aa gene gene2573 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2599 YPO2600 YPO2600 YPO2600 2921145 2921408 - conserved hypothetical protein Similar to Escherichia coli hypothetical protein YbeD SW:YBED_ECOLI (P30977) (87 aa) fasta scores: E(): 7.4e-28%2C 83.9%25 id in 87 aa%2C and to Vibrio cholerae hypothetical protein VC0945 TR:Q9KTF7 (EMBL:AE004177) (92 aa) fasta scores: E(): 2e-23%2C 70.2%25 id in 84 aa gene gene2574 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2600 YPO2601 YPO2601 dacA dacA 2921606 2922808 - putative penicillin-binding protein 5 Similar to Escherichia coli penicillin-binding protein 5 DacA SW:DACA_ECOLI (P04287) (403 aa) fasta scores: E(): 0%2C 80.6%25 id in 403 aa%2C and to Escherichia coli penicillin-binding protein 6 DacC SW:DACC_ECOLI (P08506) (400 aa) fasta scores: E(): 0%2C 63.2%25 id in 394 aa. Similar to YPO1320 (72.3%25 identity in 365 aa overlap) gene gene2575 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2601 YPO2602 YPO2602 rlpA rlpA 2923211 2924293 - rare lipoprotein A precursor Similar to Escherichia coli rare lipoprotein A precursor RlpA SW:RLPA_ECOLI (P10100) (362 aa) fasta scores: E(): 0%2C 54.6%25 id in 368 aa%2C and to Xylella fastidiosa rare lipoprotein A XF2185 TR:Q9PBF9 (EMBL:AE004032) (415 aa) fasta scores: E(): 3e-14%2C 28.8%25 id in 320 aa gene gene2576 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2602 YPO2603 YPO2603 mrdB mrdB 2924303 2925415 - rod shape-determining protein Similar to Escherichia coli rod shape-determining protein RodA SW:RODA_ECOLI (P15035) (370 aa) fasta scores: E(): 0%2C 85.9%25 id in 370 aa%2C and to Vibrio cholerae rod shape-determining protein RodA TR:Q9KTF3 (EMBL:AE004177) (373 aa) fasta scores: E(): 0%2C 67.7%25 id in 365 aa gene gene2577 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2603 YPO2604 YPO2604 mrdA mrdA 2925600 2927495 - penicillin-binding protein 2 Similar to Escherichia coli penicillin-binding protein 2 PbpA SW:PBP2_ECOLI (P08150) (633 aa) fasta scores: E(): 0%2C 81.1%25 id in 624 aa%2C and to Vibrio cholerae penicillin-binding protein 2 VC0950 TR:Q9KTF2 (EMBL:AE004177) (638 aa) fasta scores: E(): 0%2C 56.7%25 id in 630 aa gene gene2578 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2604 YPO2605 YPO2605 YPO2605 2927577 2928047 - conserved hypothetical protein Similar to Escherichia coli hypothetical protein YbeA SW:YBEA_ECOLI (P05850) (155 aa) fasta scores: E(): 0%2C91.0%25 id in 156 aa%2C and to Haemophilus influenzae hypothetical protein HI0033 SW:YBEA_HAEIN (P44470) (155 aa) fasta scores: E(): 0%2C 82.7%25 id in 156 aa gene gene2579 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2605 YPO2606 YPO2606 YPO2606 2928051 2928368 - conserved hypothetical protein Similar to Escherichia coli hypothetical protein YbeB SW:YBEB_ECOLI (P05848) (105 aa) fasta scores: E(): 0%2C84.8%25 id in 105 aa%2C and to Haemophilus influenzae hypothetical protein HI0034 SW:YBEB_HAEIN (P44471) (102 aa) fasta scores: E(): 1.5e-22%2C 60.4%25 id in 101 aa gene gene2580 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2606 YPO2607 YPO2607 nadD nadD 2928592 2929254 - putative nicotinate-nucleotide adenylyltransferase Similar to Escherichia coli nicotinate-nucleotide adenylyltransferase NadD SW:NADD_ECOLI (P52085) (213 aa) fasta scores: E(): 0%2C 58.8%25 id in 211 aa%2C and to Pseudomonas aeruginosa hypothetical protein PA4006 TR:AAG07393 (EMBL:AE004817) (214 aa) fasta scores: E(): 0%2C49.3%25 id in 209 aa gene gene2581 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2607 YPO2608 YPO2608 holA holA 2929244 2930278 - DNA polymerase III%2C delta subunit Similar to Escherichia coli DNA polymerase III%2Cdelta subunit HolA SW:HOLA_ECOLI (P28630) (343 aa) fasta scores: E(): 0%2C 71.9%25 id in 342 aa%2C and to Vibrio cholerae DNA polymerase III%2C delta subunit VC0953 TR:Q9KTE9 (EMBL:AE004177) (342 aa) fasta scores: E(): 0%2C 48.5%25 id in 332 aa gene gene2582 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2608 YPO2609 YPO2609 rlpB rlpB 2930275 2930898 - rare lipoprotein B precursor Similar to Escherichia coli rare lipoprotein B precursor RlpB SW:RLPB_ECOLI (P10101) (193 aa) fasta scores: E(): 0%2C 48.7%25 id in 193 aa%2C and to Vibrio cholerae rare lipoprotein B VC0954 TR:Q9KTE8 (EMBL:AE004177) (213 aa) fasta scores: E(): 4.5e-17%2C 34.8%25 id in 198 aa gene gene2583 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2609 YPO2610 YPO2610 leuS leuS 2930913 2933495 - leucyl-tRNA synthetase Similar to Escherichia coli leucyl-tRNA synthetase LeuS SW:SYL_ECOLI (P07813) (860 aa) fasta scores: E(): 0%2C84.8%25 id in 860 aa%2C and to Vibrio cholerae leucyl-tRNA synthetase VC0956 TR:Q9KTE6 (EMBL:AE004177) (894 aa) fasta scores: E(): 0%2C 74.5%25 id in 858 aa gene gene2584 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2610 YPO2611 YPO2611 YPO2611 2933756 2934238 + conserved hypothetical protein Similar to Escherichia coli hypothetical protein YbeL SW:YBEL_ECOLI (P46129) (160 aa) fasta scores: E(): 0%2C78.8%25 id in 160 aa%2C and to Vibrio cholerae hypothetical protein VC0957 TR:Q9KTE5 (EMBL:AE004177) (156 aa) fasta scores: E(): 6.8e-19%2C 36.3%25 id in 160 aa gene gene2585 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2611 YPO2612 YPO2612 gltL gltL 2934372 2935100 - putative glutamate/aspartate transport ATP-binding protein Similar to Corynebacterium glutamicum glutamate transport ATP-binding protein GluA gluA SW:GLUA_CORGL (P48243) (242 aa) fasta scores: E(): 0%2C 63.8%25 id in 240 aa%2Cand to Escherichia coli glutamate/aspartate transport ATP-binding protein GltL SW:GLTL_ECOLI (P41076) (241 aa) fasta scores: E(): 0%2C 88.0%25 id in 241 aa. similar to YPO2514 (54.8%25 identity in 239 aa overlap) and YPO1848 (50.0%25 identity in 246 aa overlap). gene gene2586 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2612 YPO2613 YPO2613 gltK gltK 2935097 2935771 - putative glutamate/aspartate transport system permease Similar to Escherichia coli glutamate/aspartate transport system permease protein GltK SW:GLTK_ECOLI (P41075) (224 aa) fasta scores: E(): 0%2C 86.1%25 id in 223 aa%2Cand to Pseudomonas aeruginosa probable permease of ABC transporter PA1340 TR:AAG04729 (EMBL:AE004563) (222 aa) fasta scores: E(): 0%2C 53.7%25 id in 218 aa gene gene2587 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2613 YPO2614 YPO2614 gltJ gltJ 2935771 2936511 - putative glutamate/aspartate transport system permease Similar to Rhodobacter capsulatus glutamate/glutamine/aspartate/asparagine transport system permease protein BztB SW:BZTB_RHOCA (Q52664) (426 aa) fasta scores: E(): 3.3e-12%2C 30.3%25 id in 238 aa%2C and to Escherichia coli glutamate/aspartate transport system permease protein GltJ SW:GLTJ_ECOLI (P41074) (246 aa) fasta scores: E(): 0%2C 85.0%25 id in 246 aa gene gene2588 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2614 YPO2615 YPO2615 glnH glnH 2936685 2937602 - putative amino acid-binding protein precursor Similar to Bacillus stearothermophilus glutamine-binding protein GlnH SW:GLNH_BACST (P27676) (262 aa) fasta scores: E(): 4.9e-14%2C 30.7%25 id in 244 aa%2C and to Escherichia coli amino-acid ABC transporter binding protein YbeJ SW:YBEJ_ECOLI (P37902) (302 aa) fasta scores: E(): 0%2C78.7%25 id in 305 aa gene gene2589 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2615 YPO2616 YPO2616 cutE cutE 2938367 2939914 - putative apolipoprotein N-acyltransferase Similar to Salmonella typhimurium apolipoprotein N-acyltransferase CutE TR:O87576 (EMBL:AF116773) (512 aa) fasta scores: E(): 0%2C 64.4%25 id in 511 aa%2C and to Escherichia coli apolipoprotein N-acyltransferase CutE SW:LNT_ECOLI (P23930) (512 aa) fasta scores: E(): 0%2C 65.2%25 id in 511 aa gene gene2590 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2616 YPO2617 YPO2617 ybeX ybeX 2939922 2940800 - putative membrane protein Similar to Escherichia coli hypothetical transport protein YbeX SW:YBEX_ECOLI (P77392) (292 aa) fasta scores: E(): 0%2C 86.6%25 id in 292 aa%2C and to Salmonella typhimurium integral membrane protein CorC TR:O87575 (EMBL:AF085347) (292 aa) fasta scores: E(): 0%2C 85.3%25 id in 292 aa gene gene2591 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2617 YPO2618 YPO2618 YPO2618 2940918 2941391 - conserved hypothetical protein Similar to Escherichia coli hypothetical protein YbeY SW:YBEY_ECOLI (P77385) (155 aa) fasta scores: E(): 0%2C76.1%25 id in 155 aa%2C and to Haemophilus influenzae hypothetical protein HI0004 SW:YBEY_HAEIN (P71335) (154 aa) fasta scores: E(): 0%2C 69.0%25 id in 155 aa gene gene2592 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2618 YPO2619 YPO2619 YPO2619 2941388 2942500 - conserved hypothetical protein C-terminal domain similar to C-terminal domain of Escherichia coli phosphate starvation-inducible protein PhoH SW:PHOH_ECOLI (P31544) (354 aa) fasta scores: E(): 8.1e-29%2C 41.4%25 id in 232 aa%2C and to Escherichia coli PhoH-like protein YbeZ SW:PHOL_ECOLI (P77349) (359 aa) fasta scores: E(): 0%2C 86.6%25 id in 350 aa gene gene2593 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2619 YPO2620 YPO2620 miaB miaB 2942788 2944212 - putative tRNA-thiotransferase Similar to Salmonella typhimurium putative tRNA-thiotransferase MiaB TR:Q9RCI2 (EMBL:AJ249116) (474 aa) fasta scores: E(): 0%2C 83.3%25 id in 474 aa%2C and to Escherichia coli hypothetical protein YleA SW:YLEA_ECOLI (P77645) (474 aa) fasta scores: E(): 0%2C 83.8%25 id in 474 aa gene gene2594 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2620 YPO2621 YPO2621 ubiF ubiF 2944454 2945635 + putative 2-octaprenyl-3-methyl-6-methoxy-1%2C4-benzoquinol hydroxylase Similar to Escherichia coli 2-octaprenyl-3-methyl-6-methoxy-1%2C4-benzoquinol hydroxylase UbiF SW:UBIF_ECOLI (P75728) (391 aa) fasta scores: E(): 0%2C63.8%25 id in 390 aa%2C and to Vibrio cholerae VisC-related protein VC0963 TR:Q9KTD9 (EMBL:AE004178) (397 aa) fasta scores: E(): 0%2C 56.9%25 id in 390 aa gene gene2595 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2621 YPO2622 YPO2622 YPO2622 2946762 2946899 + hypothetical protein no significant database hits gene gene2596 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2622 YPO2623 YPO2623 asnB asnB 2946948 2948612 - asparagine synthetase B Similar to Escherichia coli glutamine-hydrolyzing%2Casparagine synthetase B AsnB SW:ASNB_ECOLI (P22106) (553 aa) fasta scores: E(): 0%2C 90.8%25 id in 553 aa%2C and to Vibrio cholerae asparagine synthetase B%2C VC0991 TR:Q9KTB2 (EMBL:AE004180) (554 aa) fasta scores: E(): 0%2C 75.6%25 id in 554 aa gene gene2597 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2623 YPO2624 YPO2624 nagD nagD 2948967 2949719 - putative N-acetylglucosamine metabolism protein Similar to Escherichia coli N-acetylglucosamine utilization operon hypothetical protein NagD SW:NAGD_ECOLI (P15302) (250 aa) fasta scores: E(): 0%2C 86.0%25 id in 250 aa%2Cand to Streptomyces coelicolor conserved hypothetical protein SCE20.17c TR:Q9RDA8 (EMBL:AL136058) (259 aa) fasta scores: E(): 0%2C 45.0%25 id in 249 aa gene gene2598 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2624 YPO2625 YPO2625 nagC nagC 2949792 2951021 - putative N-acetylglucosamine regulatory protein Similar to Escherichia coli N-acetylglucosamine repressor NagC or NagR or B0676 SW:NAGC_ECOLI (P15301) (406 aa) fasta scores: E(): 0%2C 78.0%25 id in 405 aa%2C and to Vibrio cholerae probable N-acetylglucosamine regulatory protein VC0993 TR:Q9KTB0 (EMBL:AE004181) (404 aa) fasta scores: E(): 0%2C 63.3%25 id in 403 aa gene gene2599 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2625 YPO2626 YPO2626 nagA nagA 2951035 2952180 - putative N-acetylglucosamine-6-phosphate deacetylase Similar to Escherichia coli N-acetylglucosamine-6-phosphate deacetylase NagA SW:NAGA_ECOLI (P15300) (382 aa) fasta scores: E(): 0%2C 75.1%25 id in 381 aa%2C and to Vibrio cholerae N-acetylglucosamine-6-phosphate deacetylase NagA SW:NAGA_VIBCH (O32445) (378 aa) fasta scores: E(): 0%2C 64.1%25 id in 376 aa gene gene2600 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2626 YPO2627 YPO2627 glmD glmD 2952200 2953000 - putative glucosamine-6-phosphate isomerase Similar to Escherichia coli glucosamine-6-phosphate isomerase NagB SW:NAGB_ECOLI (P09375) (266 aa) fasta scores: E(): 0%2C 85.7%25 id in 266 aa%2C and to Vibrio cholerae probable glucosamine-6-phosphate isomerase VCA1025 TR:Q9KKS5 (EMBL:AE004428) (266 aa) fasta scores: E(): 0%2C79.1%25 id in 263 aa gene gene2601 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2627 YPO2628 YPO2628 nagE nagE 2953400 2955433 + pts system%2C N-acetylglucosamine-specific IIABC component Similar to Escherichia coli PTS system%2CN-acetylglucosamine-specific IIABC component NagE SW:PTAA_ECOLI (P09323) (648 aa) fasta scores: E(): 0%2C 52.6%25 id in 683 aa%2C and to Vibrio furnissii PTS permease for N-acetylglucosamine and glucose NagE TR:P96161 (EMBL:U65014) (496 aa) fasta scores: E(): 0%2C 69.9%25 id in 495 aa gene gene2602 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2628 YPO2629 YPO2629 tnp tnp 2955698 2956156 + transposase for the IS1541 insertion element Similar to Salmonella typhimurium%2C and Salmonella typhi transposase for insertion sequence IS200 TnpA SW:T200_SALTY (Q57334) (152 aa) fasta scores: E(): 0%2C 94.1%25 id in 152 aa. Identical to the Yersinia pseudotuberculosis IS1541-like element transposase Tnp TR:Q9X9F5 (EMBL:AJ238014) (152 aa) fasta scores: E(): 0%2C 100.0%25 id in 152 aa gene gene2603 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2629 YPO2630 YPO2630 glnS glnS 2956358 2958025 + glutaminyl-tRNA synthetase Similar to Escherichia coli glutaminyl-tRNA synthetase GlnS SW:SYQ_ECOLI (P00962) (553 aa) fasta scores: E(): 0%2C 87.2%25 id in 549 aa%2C and to Vibrio cholerae glutaminyl-tRNA synthetase GlnS TR:Q9KTA6 (EMBL:AE004181) (556 aa) fasta scores: E(): 0%2C 81.1%25 id in 551 aa gene gene2604 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2630 YPO2631 YPO2631 ybfM ybfM 2958731 2960152 + putative exported protein Similar to Pseudomonas aeruginosa anaerobically induced porin protein E1 OprE TR:AAG03680 (EMBL:D12711) (460 aa) fasta scores: E(): 0.00094%2C 22.2%25 id in 483 aa%2Cand to Escherichia coli hypothetical protein YbfM SW:YBFM_ECOLI (P75733) (468 aa) fasta scores: E(): 0%2C 68.2%25 id in 468 aa gene gene2605 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2631 YPO2632 YPO2632 chb chb 2960480 2963141 + N-acetylglucosaminidase (pseudogene) Similar to Serratia marcescens N-acetylglucosaminidase (chitobiase) Chb SW:CHB_SERMA (Q54468) (885 aa) fasta scores: E(): 0%2C 74.6%25 id in 889 aa%2Cand to Enterobacter sp N-acetyl-beta-D-glucosaminidase Nag1 TR:Q9ZN69 (EMBL:AB022786) (885 aa) fasta scores: E(): 0%2C74.0%25 id in 889 aa. Contains a frameshift after codon 188. The sequence has been checked and is believed to be correct pseudogene gene2606 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2632 YPO2634 YPO2634 fur fur 2963585 2964031 - ferric uptake regulator Previously sequenced as Yersinia pestis ferric uptake regulation protein Fur SW:FUR_YERPE (P33086) (148 aa) fasta scores: E(): 0%2C 100.0%25 id in 148 aa. Similar to Escherichia coli ferric uptake regulation protein Fur SW:FUR_ECOLI (P06975) (148 aa) fasta scores: E(): 0%2C 87.6%25 id in 145 aa gene gene2607 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2634 YPO2635 YPO2635 fldA fldA 2964398 2964925 - flavodoxin 1 Similar to Escherichia coli flavodoxin 1 FldA SW:FLAV_ECOLI (P23243) (175 aa) fasta scores: E(): 0%2C 91.3%25 id in 173 aa%2C and to Klebsiella pneumoniae flavodoxin FldA SW:FLAV_KLEPN (O07026) (176 aa) fasta scores: E(): 0%2C 91.3%25 id in 173 aa gene gene2608 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2635 YPO2637 YPO2637 YPO2637 2965342 2965629 - conserved hypothetical protein Similar to Escherichia coli hypothetical protein YbfE SW:YBFE_ECOLI (P75735) (120 aa) fasta scores: E(): 4.7e-28%2C 86.5%25 id in 89 aa%2C and to Pasteurella multocida hypothetical protein PM0354 TR:AAK02438 (EMBL:AE006071) (94 aa) fasta scores: E(): 1.3e-16%2C 61.9%25 id in 84 aa. The CDS is truncated at the N-terminus in comparison to the E. coli orthologue gene gene2609 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2637 YPO2638 YPO2638 YPO2638 2965961 2966728 - conserved hypothetical protein Similar to Escherichia coli putative esterase/lipase YbfF SW:YBFF_ECOLI (P75736) (254 aa) fasta scores: E(): 0%2C65.6%25 id in 253 aa%2C and to Alcaligenes eutrophus esterase EstA TR:Q9RBF3 (EMBL:AJ251831) (275 aa) fasta scores: E(): 1.5e-08%2C 22.8%25 id in 246 aa gene gene2610 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2638 YPO2639 YPO2639 YPO2639 2967853 2968038 - integrase (partial) Probable gene remnant%2C similar to Enterobacter aerogenes putative integrase Int TR:O52508 (EMBL:AF039582) (344 aa) fasta scores: E(): 1e-16%2C 68.3%25 id in 60 aa%2C and to Yersinia pseudotuberculosis integrase Int TR:Q9ZEX4 (EMBL:AJ009592) (420 aa) fasta scores: E(): 1e-15%2C 66.7%25 id in 60 aa%3B~was marked partial gene gene2611 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2639 YPO2640 YPO2640 trp1400A trp1400A 2968121 2968384 - IS1400 transposase A Similar to Yersinia enterocolitica IS1400 transposase A Trp1400A TR:Q9X9H8 (EMBL:AJ132945) (96 aa) fasta scores: E(): 1.9e-24%2C 77.3%25 id in 88 aa%2C and to Salmonella enteritidis transposase TR:O06945 (EMBL:Z83734) (88 aa) fasta scores: E(): 3.2e-22%2C 70.9%25 id in 86 aa. CDS is truncated at the N-terminus in comparison to the Y. enterocolitica sequence gene gene2612 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2640 YPO2641 YPO2641 intA intA 2968433 2968864 - phage family integrase (partial) Probable gene remnant%2C similar to Escherichia coli prophage CP4-57 integrase IntA SW:INTA_ECOLI (P32053) (413 aa) fasta scores: E(): 1.3e-23%2C 45.3%25 id in 137 aa%2C and to Vibrio cholerae phage integrase VC0516 TR:Q9KUK2 (EMBL:AE004138) (413 aa) fasta scores: E(): 7.4e-18%2C 40.4%25 id in 136 aa%3B~was marked partial gene gene2613 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2641 YPO2642 YPO2642 ypmt1.57c ypmt1.57c 2968931 2969713 - insertion sequence IS100%2C ATP-binding protein Similar to Escherichia coli insertion sequence IS21 putative ATP-binding protein%2C IstB SW:ISTB_ECOLI (P15026) (265 aa) fasta scores: E(): 0%2C 47.4%25 id in 249 aa. Also almost identical to Yersinia pestis and Escherichia coli putative IS100 transposase ypmt1.57c TR:Q9R3L5 (EMBL:AL117211) (260 aa) fasta scores: E(): 0%2C 99.6%25 id in 260 aa. gene gene2614 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2642 YPO2643 YPO2643 y1093 y1093 2969710 2970732 - transposase for insertion sequence IS100 Similar to Escherichia coli transposase for insertion sequence element IS21 IstA SW:ISTA_ECOLI (P15025) (390 aa) fasta scores: E(): 3e-27%2C 33.1%25 id in 329 aa. Identical to the previously sequenced Yersinia pestis%2CYersinia pseudotuberculosis%2C and Escherichia coli pesticin plasmid insertion sequence transposase Y1055 TR:P74993 (EMBL:U59875) (340 aa) fasta scores: E(): 0%2C 100.0%25 id in 340 aa gene gene2615 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2643 YPO2644 YPO2644 YPO2644 2970819 2971556 + conserved hypothetical protein (pseudogene) This CDS is disrupted by the insertion of IS100 element. Similar to C-terminal regions of Schizosaccharomyces pombe hypothetical protein in chromosome I SPAC19G12.03 TR:O13842 (EMBL:Z97209) (320 aa) fasta scores: E(): 2.3e-25%2C 44.8%25 id in 250 aa%2C and Synechocystis sp hypothetical protein SLL1306 TR:P73597 (EMBL:D90907) (335 aa) fasta scores: E(): 1.7e-13%2C 30.7%25 id in 231 aa. pseudogene gene2616 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2644 YPO2645 YPO2645 proU proU 2971786 2972790 - glycine betaine-binding periplasmic protein Similar to Escherichia coli glycine betaine-binding periplasmic protein ProX SW:PROX_ECOLI (P14177) (330 aa) fasta scores: E(): 0%2C 71.6%25 id in 328 aa%2C and to Pseudomonas putida glycine betaine/L-proline-binding periplasmic protein ProX TR:Q9L7Y8 (EMBL:AF218267) (342 aa) fasta scores: E(): 0%2C 49.5%25 id in 325 aa gene gene2617 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2645 YPO2646 YPO2646 proW proW 2972838 2974004 - glycine betaine/L-proline transport system permease Similar to Escherichia coli glycine betaine/L-proline transport system permease protein ProW SW:PROW_ECOLI (P14176) (354 aa) fasta scores: E(): 0%2C 76.6%25 id in 372 aa%2C and to Pseudomonas putida glycine betaine/L-proline transport system permease protein ProW TR:Q9L7Y9 (EMBL:AF218267) (315 aa) fasta scores: E(): 0%2C62.6%25 id in 305 aa. CDS contain an extended N-terminus%2Cpossible alternative translational start sites. gene gene2618 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2646 YPO2647 YPO2647 proV proV 2973997 2975196 - glycine betaine/L-proline transport ATP-binding protein Similar to Escherichia coli glycine betaine/L-proline transport ATP-binding protein ProV SW:PROV_ECOLI (P14175) (400 aa) fasta scores: E(): 0%2C 81.7%25 id in 398 aa%2C and to Salmonella typhimurium glycine betaine/L-proline transport ATP-binding protein ProV SW:PROV_SALTY (P17328) (400 aa) fasta scores: E(): 0%2C 81.2%25 id in 398 aa gene gene2619 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2647 YPO2648 YPO2648 nrdF nrdF 2975872 2976843 - ribonucleoside-diphosphate reductase 2 beta chain Similar to Escherichia coli ribonucleoside-diphosphate reductase 2 beta chain NrdF SW:RIR4_ECOLI (P37146) (319 aa) fasta scores: E(): 0%2C 79.8%25 id in 317 aa%2C and to Salmonella typhimurium ribonucleoside-diphosphate reductase 2 beta chain NrdF SW:RIR4_SALTY (P17424) (319 aa) fasta scores: E(): 0%2C 79.5%25 id in 317 aa gene gene2620 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2648 YPO2649 YPO2649 nrdE nrdE 2976950 2979031 - ribonucleoside-diphosphate reductase 2 alpha chain Similar to Escherichia coli ribonucleoside-diphosphate reductase 2 alpha chain NrdE SW:RIR3_ECOLI (P39452) (713 aa) fasta scores: E(): 0%2C 74.2%25 id in 701 aa%2C and to Mycobacterium tuberculosis ribonucleoside-diphosphate reductase alpha chain NrdE SW:RIR1_MYCTU (P50640) (693 aa) fasta scores: E(): 0%2C 82.0%25 id in 693 aa. CDs appears to contain an N-terminal extention in comparison to the M. tuberculosis orthologue but is the same length as the E. coli protein. gene gene2621 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2649 YPO2650 YPO2650 nrdI nrdI 2979082 2979486 - NrdI protein homologue Similar to Escherichia coli hypothetical protein reductase NrdI SW:NRDI_ECOLI (Q47415) (136 aa) fasta scores: E(): 0%2C 69.9%25 id in 133 aa%2C and to Salmonella typhimurium hypothetical protein NrdI SW:NRDI_SALTY (Q56109) (136 aa) fasta scores: E(): 0%2C 68.2%25 id in 132 aa gene gene2622 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2650 YPO2651 YPO2651 nrdH nrdH 2979500 2979736 - putative glutaredoxin Similar to Corynebacterium ammoniagenes NrdH-redoxin NrdH TR:O69271 (EMBL:Y09572) (75 aa) fasta scores: E(): 4.4e-14%2C 49.3%25 id in 75 aa%2C and to Mycobacterium tuberculosis hypothetical protein RV3053C TR:P95106 (EMBL:Z83866) (79 aa) fasta scores: E(): 2.9e-17%2C 54.7%25 id in 75 aa gene gene2623 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2651 YPO2652 YPO2652 asr asr 2980257 2980622 + putative acid shock protein Similar to Escherichia coli acid shock protein Asr SW:ASR_ECOLI (P36560) (111 aa) fasta scores: E(): 3e-11%2C57.5%25 id in 106 aa%2C and to C-terminal region of Chaetopterus variopedatus histone H1 TR:O18642 (EMBL:U96764) (202 aa) fasta scores: E(): 0.017%2C 37.6%25 id in 125 aa. N-terminal region similar to YPO2318 (50.5%25 identity in 95 aa overlap). Contains a degenerate repeat region between codons 60..110 gene gene2624 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2652 YPO2653 YPO2653 YPO2653 2981100 2981435 + conserved hypothetical protein Similar to Escherichia coli hypothetical protein YgaC SW:YGAC_ECOLI (P36931) (114 aa) fasta scores: E(): 5.1e-24%2C 56.4%25 id in 110 aa%2C and to Lactococcus lactis hypothetical protein TR:Q9ZAG0 (EMBL:Y18267) (769 aa) fasta scores: E(): 1.1%2C 26.3%25 id in 118 aa gene gene2625 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2653 YPO2654 YPO2654 yicN yicN 2981533 2981982 - putative membrane protein Similar to Escherichia coli hypothetical protein YicN SW:YICN_ECOLI (P31439) (159 aa) fasta scores: E(): 3e-14%2C 32.7%25 id in 150 aa gene gene2626 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2654 YPO2656 YPO2656 y1062 y1062 2982348 2983556 + transposase for the IS285 insertion element Previously sequenced Yersinia pestis transposase Y1062 or Ypmt1.80C TR:O68779 (EMBL:AF053947) (402 aa) fasta scores: E(): 0%2C 100.0%25 id in 402 aa. gene gene2627 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2656 YPO2657 YPO2657 YPO2657 2983593 2983802 - putative mobilization protein (pseudogene) Similar to Escherichia coli plasmid (ColE1) mobilization protein MbeD SW:MBED_ECOLI (P13660) (77 aa) fasta scores: E(): 0.31%2C 28.4%25 id in 67 aa%2C and to Escherichia coli plasmid (pLG13) mobilization protein MobD TR:AAG18130 (EMBL:AF251289) (77 aa) fasta scores: E(): 0.18%2C 28.4%25 id in 67 aa. This CDS appears to be disrupted by the insertion of the downstream IS285 element. The insertion occurred near the C-terminus. It is not clear whether this insertion affects the function of the protein. pseudogene gene2628 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2657 YPO2659 YPO2659 cspB cspB 2984316 2984528 + cold shock protein Identical to Yersinia enterocolitica cold shock-like protein CspB SW:CSPB_YEREN (O85593) (70 aa) fasta scores: E(): 9.2e-29%2C 100.0%25 id in 70 aa. Similar to Yersinia pestis hypothetical protein TR:O34279 (EMBL:Z97978) (70 aa) fasta scores: E(): 4e-26%2C 90.0%25 id in 70 aa. Similar to YPO3644 (90.7%25 identity in 75 aa overlap)%2C YPO3643 (88.0%25 identity in 75 aa overlap)%2C YPO1746 (77.6%25 identity in 67 aa overlap)%2C YPO1655 (74.3%25 identity in 70 aa overlap)%2CYPO2595 (63.9%25 identity in 72 aa overlap)%2C YPO1398 (51.4%25 identity in 70 aa overlap) and YPO1366 (50.8%25 identity in 65 aa overlap). gene gene2629 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2659 YPO2660 YPO2660 YPO2660 2985405 2986982 + putative solute-binding protein Similar to Salmonella typhimurium anaerobically induced%2C fnr-dependent%2C putative substrate-binding protein Oxd-6A TR:O34156 (EMBL:U94729) (528 aa) fasta scores: E(): 0%2C 72.5%25 id in 517 aa%2C and to Escherichia coli hypothetical protein TR:Q05633 (EMBL:L12007) (336 aa) fasta scores: E(): 0%2C 67.0%25 id in 315 aa gene gene2630 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2660 YPO2661 YPO2661 YPO2661 2986979 2987950 + putative membrane protein Similar to Salmonella typhimurium anaerobically induced%2C fnr-dependent%2C putative transmembrane protein Oxd-6 TR:O34157 (EMBL:U94729) (323 aa) fasta scores: E(): 0%2C 68.3%25 id in 312 aa%2C and to Streptococcus pyogenes transmembrane transport protein DppB TR:Q9ZAS5 (EMBL:U78968) (325 aa) fasta scores: E(): 0%2C 41.1%25 id in 314 aa gene gene2631 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2661 YPO2662 YPO2662 YPO2662 2987947 2988753 + binding-protein-dependent transport protein Similar to Salmonella typhimurium anaerobically induced%2C fnr-dependent%2C putative transmembrane protein Oxd-6C TR:O34158 (EMBL:U94729) (270 aa) fasta scores: E(): 0%2C 61.7%25 id in 266 aa%2C and to Streptococcus pyogenes transmembrane transport protein DppC TR:Q9ZAS4 (EMBL:U78968) (274 aa) fasta scores: E(): 0%2C 40.8%25 id in 255 aa gene gene2632 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2662 YPO2663 YPO2663 YPO2663 2988753 2989559 + putative transport ATPase Streptococcus pyogenes dipeptide permease ATPase protein DppD TR:Q9ZAS3 (EMBL:U78968) (267 aa) fasta scores: E(): 4.4e-22%2C 34.0%25 id in 262 aa%2C and to Salmonella typhimurium anaerobically induced%2C fnr-dependent%2C putative ATPase Oxd-6D TR:O34159 (EMBL:U94729) (265 aa) fasta scores: E(): 0%2C 52.4%25 id in 252 aa gene gene2633 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2663 YPO2664 YPO2664 YPO2664 2989552 2990217 + putative transport ATPase Similar to Streptococcus pyogenes ATPase protein DppE dppE TR:Q9ZAS2 (EMBL:U78968) (208 aa) fasta scores: E(): 5.9e-29%2C 43.4%25 id in 189 aa%2C and to Salmonella typhimurium anaerobically induced%2C fnr-dependent%2C putative ATPase Oxd-6E TR:O34160 (EMBL:U94729) (196 aa) fasta scores: E(): 0%2C 61.8%25 id in 191 aa gene gene2634 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2664 YPO2665 YPO2665 ureA ureA 2991416 2991718 + urease gamma subunit Previously sequenced as Yersinia pestis urease gamma subunit UreA SW:URE3_YERPS (P52315) (100 aa) fasta scores: E(): 0%2C 100.0%25 id in 100 aa. Identical to the Yersinia pseudotuberculosis urease gamma subunit UreA%2C and similar to Yersinia enterocolitica urease gamma subunit UreA SW:URE3_YEREN (P31496) (100 aa) fasta scores: E(): 0%2C 99.0%25 id in 100 aa gene gene2635 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2665 YPO2666 YPO2666 ureB ureB 2991771 2992205 + urease beta subunit Previously sequenced as Yersinia pestis urease beta subunit UreB SW:URE2_YERPS (P52314) (144 aa) fasta scores: E(): 0%2C 100.0%25 id in 144 aa. Identical to the Yersinia pseudotuberculosis urease gamma subunit UreB%2C and similar to Yersinia enterocolitica urease beta subunit UreB SW:URE2_YEREN (P31495) (163 aa) fasta scores: E(): 0%2C 90.7%25 id in 140 aa gene gene2636 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2666 YPO2667 YPO2667 ureC ureC 2992295 2994013 + urease alpha subunit Previously sequenced as Yersinia pestis urease alpha subunit UreC SW:URE1_YERPE (Q9ZFR9) (571 aa) fasta scores: E(): 0%2C 100.0%25 id in 571 aa. Similar to Yersinia pseudotuberculosis urease alpha subunit ureC SW:URE1_YERPS (P52313) (571 aa) fasta scores: E(): 0%2C 99.8%25 id in 571 aa%2Cand to Yersinia enterocolitica urease alpha subunit UreC SW:URE1_YEREN (P31494) (571 aa) fasta scores: E(): 0%2C 97.2%25 id in 571 aa gene gene2637 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2667 YPO2668 YPO2668 ureE ureE 2994309 2995004 + urease accessory protein Previously sequenced as to Yersinia pestis urease accessory protein UreE SW:UREE_YERPE (Q9ZFR8) (231 aa) fasta scores: E(): 0%2C 100.0%25 id in 231 aa. Similar to Yersinia pseudotuberculosis urease accessory protein UreE TR:AAA87855 (EMBL:U40842) (231 aa) fasta scores: E(): 0%2C99.6%25 id in 231 aa%2C and to Yersinia enterocolitica urease accessory protein UreE SW:UREE_YEREN (P42869) (263 aa) fasta scores: E(): 0%2C 93.9%25 id in 231 aa gene gene2638 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2668 YPO2669 YPO2669 ureF ureF 2995026 2995712 + urease accessory protein Previously sequenced as Yersinia pestis urease accessory protein UreF SW:UREF_YERPE (Q9ZFR7) (228 aa) fasta scores: E(): 0%2C 99.6%25 id in 228 aa. Divergence between the two sequences at codon 70. Similar to Yersinia pseudotuberculosis urease accessory protein UreF TR:AAA87856 (EMBL:U40842) (228 aa) fasta scores: E(): 0%2C99.6%25 id in 228 aa%2C and to Yersinia enterocolitica urease accessory protein UreF SW:UREF_YEREN (P42870) (228 aa) fasta scores: E(): 0%2C 97.8%25 id in 228 aa gene gene2639 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2669 YPO2670 YPO2670 ureG ureG 2995839 2996501 + urease accessory protein Previously sequenced as Yersinia pestis urease accessory protein UreG SW:UREG_YERPS (P52319) (220 aa) fasta scores: E(): 0%2C 99.5%25 id in 220 aa. Divergence between the two sequences at codon 1. Similar to Yersinia enterocolitica urease accessory protein UreG SW:UREG_YEREN (P42871) (221 aa) fasta scores: E(): 0%2C 96.3%25 id in 219 aa gene gene2640 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2670 YPO2671 YPO2671 ureD ureD 2996498 2997461 + urease accessory protein (pseudogene) Majority of the CDS has previously been sequenced as Yersinia pestis urease accessory protein%2C UreD SW:URED_YERPE (Q9ZFR5) (277 aa) fasta scores: E(): 0%2C100.0%25 id in 268 aa. Similar to Yersinia pseudotuberculosis urease accessory protein UreD TR:AAA87858 (EMBL:U40842) (321 aa) fasta scores: E(): 0%2C 99.7%25 id in 321 aa. Contains a frameshift after codon 268. Frame shift occurs at a poly G heptamer. The sequence has been checked and is believed to be correct pseudogene gene2641 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2671 YPO2672 YPO2672 YPO2672 2997656 2998648 + putative urea transporter Similar to internal regions of Squalus acanthias urea transporter ShUT TR:Q9I9F0 (EMBL:AF257331) (380 aa) fasta scores: E(): 3.1e-22%2C 28.4%25 id in 313 aa%2C and to Mus musculus urea transporter isoform UTA-3 TR:AAG32168 (EMBL:AF258602) (461 aa) fasta scores: E(): 3.6e-22%2C 29.2%25 id in 315 aa gene gene2642 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2672 YPO2673 YPO2673 YPO2673 2998797 2999855 + putative nickel transport protein Similar to Alcaligenes eutrophus high-affinity nickel transport protein HoxN TR:AAA69017 (EMBL:M58599) (351 aa) fasta scores: E(): 0%2C 55.2%25 id in 330 aa%2C and to Salmonella enterica NxiA TR:AAG31202 (EMBL:AF020810) (337 aa) fasta scores: E(): 0%2C 60.1%25 id in 341 aa gene gene2643 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2673 YPO2674 YPO2674 YPO2674 3000024 3000353 - putative exported protein Similar to Escherichia coli hypothetical protein HdeB SW:HDEB_ECOLI (P26605) (108 aa) fasta scores: E(): 7.1e-13%2C 43.9%25 id in 107 aa%2C and to Escherichia coli protein hypothetical protein HdeA SW:HDEA_ECOLI (P26604) (110 aa) fasta scores: E(): 4%2C 28.6%25 id in 98 aa gene gene2644 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2674 YPO2675 YPO2675 YPO2675 3000971 3002146 + putative potassium channel protein Similar to Escherichia coli putative potassium channel protein Kch SW:KCH_ECOLI (P31069) (417 aa) fasta scores: E(): 0%2C 38.5%25 id in 384 aa%2C and to Halobacterium sp potassium channel homolog PchA TR:AAG20054 (EMBL:AE005085) (411 aa) fasta scores: E(): 4e-18%2C 25.6%25 id in 316 aa gene gene2645 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2675 YPO2676 YPO2676 YPO2676 3002244 3002648 - putative membrane protein Similar to Mycobacterium tuberculosis hypothetical protein RV3069 TR:P95089 (EMBL:Z83866) (132 aa) fasta scores: E(): 5.9e-08%2C 33.3%25 id in 126 aa%2C and to Pyrococcus abyssi hypothetical protein protein PAB1925 TR:Q9V0X2 (EMBL:AJ248285) (123 aa) fasta scores: E(): 1.4e-07%2C 32.8%25 id in 116 aa gene gene2646 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2676 YPO2677 YPO2677 YPO2677 3002664 3003044 - putative membrane protein Similar to Helicobacter pylori conserved hypothetical integral membrane protein HP1225 TR:O25823 (EMBL:AE000628) (130 aa) fasta scores: E(): 1.4e-11%2C 40.5%25 id in 121 aa%2C and to Mycobacterium tuberculosis hypothetical protein RV3070 TR:P95088 (EMBL:Z83866) (126 aa) fasta scores: E(): 5.7e-11%2C 38.5%25 id in 130 aa gene gene2647 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2677 YPO2678 YPO2678 celA celA 3004085 3004402 + PTS system%2C cellobiose-specific IIB component Similar to Escherichia coli PTS system%2Ccellobiose-specific IIB component CelA SW:PTCB_ECOLI (P17409) (106 aa) fasta scores: E(): 2.6e-32%2C 82.5%25 id in 103 aa%2C and to Aeromonas hydrophila PTS system%2Ccellobiose-specific IIB component CelA SW:PTCB_AERHY (P55901) (88 aa) fasta scores: E(): 1.4e-26%2C 80.7%25 id in 88 aa gene gene2648 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2678 YPO2679 YPO2679 celB celB 3004413 3005774 + PTS system%2C cellobiose-specific IIC component Similar to Escherichia coli PTS system%2Ccellobiose-specific IIC component CelB SW:PTCC_ECOLI (P17334) (452 aa) fasta scores: E(): 0%2C 79.0%25 id in 453 aa%2Cand to Bacillus stearothermophilus PTS system%2Ccellobiose-specific iIIC component CelB SW:PTCC_BACST (Q45400) (451 aa) fasta scores: E(): 0%2C 32.0%25 id in 466 aa gene gene2649 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2679 YPO2680 YPO2680 celC celC 3005941 3006288 + PTS system%2C cellobiose-specific IIA component Similar to Escherichia coli PTS system%2Ccellobiose-specific IIA component CelC SW:PTCA_ECOLI (P17335) (116 aa) fasta scores: E(): 2.8e-29%2C 72.2%25 id in 115 aa%2C and to Vibrio cholerae PTS system%2Ccellobiose-specific IIA component VC1283 TR:Q9KSH3 (EMBL:AE004207) (111 aa) fasta scores: E(): 4.6e-19%2C 57.7%25 id in 97 aa gene gene2650 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2680 YPO2681 YPO2681 celD celD 3006325 3007167 + cel operon repressor Similar to Escherichia coli cel operon repressor CelD SW:CELD_ECOLI (P17410) (280 aa) fasta scores: E(): 0%2C67.9%25 id in 271 aa%2C and to Bacillus subtilis probable transcriptional regulator YbfI TR:O31449 (EMBL:Z99105) (275 aa) fasta scores: E(): 4.3e-06%2C 27.1%25 id in 251 aa gene gene2651 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2681 YPO2682 YPO2682 YPO2682 3007219 3007980 + conserved hypothetical protein Similar to Escherichia coli hypothetical protein YdjC SW:YDJC_ECOLI (P37794) (249 aa) fasta scores: E(): 0%2C60.9%25 id in 253 aa%2C and to Bacillus halodurans hypothetical protein BH0913 TR:Q9KED9 (EMBL:AP001510) (237 aa) fasta scores: E(): 6.1e-28%2C 39.9%25 id in 233 aa gene gene2652 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2682 YPO2683 YPO2683 YPO2683 3007987 3008163 - hypothetical protein no significant database hits to the full length CDS gene gene2653 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2683 YPO2684 YPO2684 YPO2684 3008275 3008643 - putative exported protein Poor database matches%2C similar to Pseudomonas aeruginosa hypothetical protein PA1114 TR:AAG04503 (EMBL:AE004541) (111 aa) fasta scores: E(): 0.014%2C 30.4%25 id in 102 aa gene gene2654 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2684 YPO2685 YPO2685 seqA seqA 3009138 3009665 + putative negative regulator of replication initiation Similar to Escherichia coli negative regulator of replication initiation SeqA SW:SEQA_ECOLI (P36658) (181 aa) fasta scores: E(): 0%2C 73.1%25 id in 182 aa%2C and to Vibrio cholerae negative regulator of replication initiation SeqA TR:Q9KQA4 (EMBL:AE004283) (177 aa) fasta scores: E(): 1.7e-31%2C 52.8%25 id in 180 aa gene gene2655 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2685 YPO2686 YPO2686 pgm pgm 3009738 3011381 + phosphoglucomutase Similar to Escherichia coli phosphoglucomutase Pgm SW:PGMU_ECOLI (P36938) (546 aa) fasta scores: E(): 0%2C 82.8%25 id in 546 aa%2C and to Vibrio cholerae phosphoglucomutase VC2095 TR:Q9KQA5 (EMBL:AE004283) (548 aa) fasta scores: E(): 0%2C 69.6%25 id in 546 aa gene gene2656 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2686 YPO2687 YPO2687 YPO2687 3012125 3012553 - putative membrane protein Similar to Pyrococcus abyssi hypothetical protein PAB0665 TR:Q9V003 (EMBL:AJ248286) (137 aa) fasta scores: E(): 3.4e-23%2C 51.8%25 id in 141 aa%2C and to Pyrococcus horikoshii hypothetical protein PH1270 TR:O58983 (EMBL:AP000005) (140 aa) fasta scores: E(): 2.4e-21%2C 49.3%25 id in 142 aa gene gene2657 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2687 YPO2688 YPO2688 kdpE kdpE 3012648 3013277 - two-component regulatory protein response regulator KdpE Similar to Escherichia coli kdp operon transcriptional regulatory protein KdpE SW:KDPE_ECOLI (P21866) (225 aa) fasta scores: E(): 0%2C 75.0%25 id in 208 aa%2Cand to Pseudomonas aeruginosa two-component response regulator KdpE TR:AAG05026 (EMBL:AE004591) (230 aa) fasta scores: E(): 0%2C 51.7%25 id in 209 aa. CDS is truncated at the N-terminus in comparison to other orthologues. Upstream inframe amino acids are similar to the N-terminus of orthologues%2C but there is no translational start gene gene2658 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2688 YPO2689 YPO2689 kdpD kdpD 3013570 3016296 - two-component regulatory protein sensor kinase KdpD Similar to Escherichia coli sensor protein KdpD SW:KDPD_ECOLI (P21865) (894 aa) fasta scores: E(): 0%2C 71.2%25 id in 891 aa%2C and to Clostridium acetobutylicum sensor protein KdpD SW:KDPD_CLOAB (P94608) (900 aa) fasta scores: E(): 0%2C 36.1%25 id in 914 aa gene gene2659 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2689 YPO2690 YPO2690 kdpC kdpC 3016306 3016908 - putative potassium-transporting ATPase C chain Similar to Escherichia coli potassium-transporting ATPase C chain KdpC SW:ATKC_ECOLI (P03961) (190 aa) fasta scores: E(): 1.2e-32%2C 57.0%25 id in 186 aa%2C and to Mycobacterium tuberculosis potassium-transporting ATPase C chain KdpC SW:ATKC_MYCTU (P96369) (189 aa) fasta scores: E(): 8.1e-24%2C 47.3%25 id in 184 aa gene gene2660 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2690 YPO2691 YPO2691 kdpB kdpB 3017120 3019186 - putative potassium-transporting ATPase B chain Similar to Escherichia coli potassium-transporting ATPase B chain KdpB SW:ATKB_ECOLI (P03960) (682 aa) fasta scores: E(): 0%2C 82.5%25 id in 687 aa%2C and to Streptomyces coelicolor potassium-transporting ATPase B chain KdpB TR:Q9X8Z9 (EMBL:AL078610) (707 aa) fasta scores: E(): 0%2C65.5%25 id in 681 aa gene gene2661 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2691 YPO2692 YPO2692 kdpA kdpA 3019280 3020968 - putative potassium-transporting ATPase A chain Similar to Escherichia coli potassium-transporting ATPase A chain KdpA SW:ATKA_ECOLI (P03959) (557 aa) fasta scores: E(): 0%2C 74.8%25 id in 556 aa%2C and to Mycobacterium tuberculosis potassium-transporting ATPase A chain KdpA SW:ATKA_MYCTU (P96371) (571 aa) fasta scores: E(): 0%2C 50.4%25 id in 568 aa gene gene2662 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2692 YPO2693 YPO2693 ybfA ybfA 3021463 3021669 + putative membrane protein Similar to Escherichia coli hypothetical protein YbfA SW:YBFA_ECOLI (P28913) (68 aa) fasta scores: E(): 1.7e-18%2C 63.2%25 id in 68 aa gene gene2663 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2693 YPO2694 YPO2694 YPO2694 3022008 3022490 + conserved hypothetical protein Similar to Escherichia coli hypothetical protein YbgA SW:YBGA_ECOLI (P24252) (169 aa) fasta scores: E(): 5.8e-30%2C 53.8%25 id in 143 aa gene gene2664 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2694 YPO2695 YPO2695 phr phr 3022620 3024083 + putative deoxyribodipyrimidine photolyase Similar to Escherichia coli deoxyribodipyrimidine photolyase PhrB SW:PHR_ECOLI (P00914) (472 aa) fasta scores: E(): 0%2C 60.2%25 id in 475 aa%2C and to Vibrio cholerae deoxyribodipyrimidine photolyase VCA0057 TR:Q9KNA8 (EMBL:AE004349) (469 aa) fasta scores: E(): 0%2C 51.4%25 id in 477 aa gene gene2665 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2695 YPO2696 YPO2696 YPO2696 3024080 3025111 + putative 3'%2C5'-cyclic-nucleotide phosphodiesterase Probable periplasmic protein cyclic-nucleotide phosphodiesterase. Similar to Vibrio fischeri 3'%2C5'-cyclic-nucleotide phosphodiesterase CpdP SW:CPDP_VIBFI (Q56686) (330 aa) fasta scores: E(): 0%2C 46.6%25 id in 328 aa%2C and to Schizosaccharomyces pombe 3'%2C5'-cyclic-nucleotide phosphodiesterase Cgs2 SW:CNA1_SCHPO (P36599) (346 aa) fasta scores: E(): 9.1e-16%2C28.0%25 id in 336 aa. gene gene2666 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2696 YPO2697 YPO2697 YPO2697 3025234 3025980 + conserved hypothetical protein Similar to Escherichia coli hypothetical protein YbgI SW:YBGI_ECOLI (P75743) (247 aa) fasta scores: E(): 0%2C69.2%25 id in 247 aa%2C and to C-terminal region of Haemophilus influenzae protein HI0105 SW:YBGI_HAEIN (Q57354) (279 aa) fasta scores: E(): 0%2C 60.7%25 id in 252 aa gene gene2667 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2697 YPO2698 YPO2698 YPO2698 3026599 3027252 + conserved hypothetical protein (pseudogene) Similar to Escherichia coli hypothetical protein YbgJ SW:YBGJ_ECOLI (P75744) (218 aa) fasta scores: E(): 0%2C71.1%25 id in 218 aa%2C and to Haemophilus influenzae hypothetical protein HI1731 SW:YBGJ_HAEIN (P44299) (213 aa) fasta scores: E(): 0%2C 48.3%25 id in 209 aa. Contains a nonsense mutation (amber) at codon 182 which results in the deletion of 35 C-terminal amino acids. Effect on the function of the protein is unknown. The sequence has been checked and is believed to be correct pseudogene gene2668 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2698 YPO2699 YPO2699 YPO2699 3027249 3028199 + conserved hypothetical protein Similar to Escherichia coli hypothetical protein YbgK SW:YBGK_ECOLI (P75745) (310 aa) fasta scores: E(): 0%2C69.0%25 id in 306 aa%2C and to internal region of Saccharomyces cerevisiae urea amidolyase YBR1448 SW:DUR1_YEAST (P32528) (1835 aa) fasta scores: E(): 1.4e-10%2C 30.8%25 id in 318 aa gene gene2669 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2699 YPO2700 YPO2700 YPO2700 3028196 3028933 + conserved hypothetical protein Similar to Escherichia coli hypothetical protein YbgL SW:YBGL_ECOLI (P75746) (244 aa) fasta scores: E(): 0%2C71.3%25 id in 244 aa%2C and to Haemophilus influenzae hypothetical protein HI1729 SW:YBGL_HAEIN (P45347) (257 aa) fasta scores: E(): 0%2C 55.6%25 id in 243 aa gene gene2670 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2700 YPO2701 YPO2701 YPO2701 3029018 3029749 + putative membrane protein Similar to Streptomyces coelicolor possible integral membrane protein SCF51A.18C TR:Q9RL46 (EMBL:AL121596) (239 aa) fasta scores: E(): 0%2C 48.2%25 id in 220 aa%2C and to Campylobacter jejuni hydrophobic protein CJ0552 TR:Q9PHW2 (EMBL:AL139075) (230 aa) fasta scores: E(): 0%2C 46.7%25 id in 227 aa gene gene2671 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2701 YPO2702 YPO2702 YPO2702 3029746 3030765 + putative membrane protein Similar to Campylobacter jejuni putative integral membrane protein CJ0553 TR:Q9PHW1 (EMBL:AL139075) (317 aa) fasta scores: E(): 0%2C 44.8%25 id in 335 aa%2C and to Streptomyces coelicolor putative membrane protein SCF51A.17C TR:Q9RL47 (EMBL:AL121596) (324 aa) fasta scores: E(): 0%2C 42.6%25 id in 343 aa gene gene2672 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2702 YPO2703 YPO2703 pcp pcp 3030775 3031422 + putative pyrrolidone-carboxylate peptidase Similar to Pseudomonas fluorescens pyrrolidone-carboxylate peptidase Pcp SW:PCP_PSEFL (P42673) (213 aa) fasta scores: E(): 0%2C 53.0%25 id in 215 aa%2C and to Streptomyces coelicolor pyrrolidone-carboxylate peptidase Pcp TR:Q9RL48 (EMBL:AL121596) (216 aa) fasta scores: E(): 0%2C 53.5%25 id in 217 aa gene gene2673 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2703 YPO2704 YPO2704 ung ung 3031513 3032199 - putative uracil-DNA glycosylase Similar to Escherichia coli uracil-DNA glycosylase Ung SW:UNG_ECOLI (P12295) (228 aa) fasta scores: E(): 0%2C73.9%25 id in 222 aa%2C and to Vibrio cholerae uracil-DNA glycosylase VC2359 TR:Q9KPK8 (EMBL:AE004306) (226 aa) fasta scores: E(): 0%2C 75.4%25 id in 224 aa gene gene2674 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2704 YPO2705 YPO2705 YPO2705 3032552 3032935 + conserved hypothetical protein Similar to Serratia liquefaciens hypothetical protein YfiD SW:YFID_SERLI (P18953) (127 aa) fasta scores: E(): 0%2C 86.6%25 id in 127 aa%2C and to Escherichia coli hypothetical protein YfiD SW:YFID_ECOLI (P33633) (127 aa) fasta scores: E(): 0%2C 82.7%25 id in 127 aa gene gene2675 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2705 YPO2706 YPO2706 plaA plaA 3033114 3034076 + phospholipase A Similar to Yersinia enterocolitica phospholipase A YplA TR:O85477 (EMBL:AF067849) (324 aa) fasta scores: E(): 0%2C 69.0%25 id in 326 aa%2C and to Serratia sp MK1 phospholipase A1 PlaA TR:Q9X9D8 (EMBL:U37262) (320 aa) fasta scores: E(): 0%2C 57.5%25 id in 322 aa gene gene2676 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2706 YPO2707 YPO2707 yplB yplB 3034154 3034810 + putative phospholipase A accessory protein Similar to Serratia spMK1. accessory protein PlaS TR:Q9X9D9 (EMBL:U37262) (251 aa) fasta scores: E(): 0%2C51.0%25 id in 200 aa%2C and to Serratia liquefaciens PhlB protein precursor SW:PHLB_SERLI (P18954) (227 aa) fasta scores: E(): 2.1e-26%2C 55.2%25 id in 143 aa%2C and to Yersinia enterocolitica hypothetical protein YplB TR:O85478 (EMBL:AF067849) (200 aa) fasta scores: E(): 0%2C 72.0%25 id in 161 aa. CDS is extended at the C-terminus and truncated at the N-terminus in comparison Y. enterocolitica orthologue. In frame upstream amino acids are similar to the N-terminus of the Y. enterocolitica orthologue. Unclear if the CDS is a pseudogene gene gene2677 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2707 YPO2708 YPO2708 rbaB rbaB 3034941 3036266 - ATP-dependent RNA helicase Probable DEAD box family helicase. Similar to Escherichia coli ATP-dependent RNA helicase SrmB SW:SRMB_ECOLI (P21507) (444 aa) fasta scores: E(): 0%2C 81.0%25 id in 432 aa%2C and to Haemophilus influenzae ATP-dependent RNA helicase SrmB SW:SRMB_HAEIN (P44701) (439 aa) fasta scores: E(): 0%2C 63.4%25 id in 434 aa gene gene2678 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2708 YPO2709 YPO2709 YPO2709 3036506 3037264 + conserved hypothetical protein Similar to Escherichia coli hypothetical protein YfiC or B2575 TR:P76591 (EMBL:AE000344) (285 aa) fasta scores: E(): 0%2C 52.7%25 id in 237 aa gene gene2679 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2709 YPO2710 YPO2710 nadB nadB 3037547 3039184 - L-aspartate oxidase Similar to Escherichia coli L-aspartate oxidase NadB SW:NADB_ECOLI (P10902) (540 aa) fasta scores: E(): 0%2C 83.9%25 id in 533 aa%2C and to Vibrio cholerae L-aspartate oxidase VC2469 TR:Q9KPA4 (EMBL:AE004316) (550 aa) fasta scores: E(): 0%2C 76.0%25 id in 534 aa. Possible alternative translational start. gene gene2680 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2710 YPO2711 YPO2711 rpoE rpoE 3039372 3039947 + RNA polymerase sigma E factor Probable alternative sigma factor. Similar to Escherichia coli RNA polymerase sigma E factor RpoE SW:RPOE_ECOLI (P34086) (191 aa) fasta scores: E(): 0%2C 92.7%25 id in 191 aa%2C and to Salmonella typhimurium RNA polymerase sigma E factor RpoE SW:RPOE_SALTY (P37401) (191 aa) fasta scores: E(): 0%2C 93.2%25 id in 191 aa gene gene2681 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2711 YPO2712 YPO2712 mclA mclA 3039973 3040629 + sigma E factor negative regulatory protein Similar to Escherichia coli sigma E factor negative regulatory protein RseA SW:RSEA_ECOLI (P38106) (216 aa) fasta scores: E(): 0%2C 63.3%25 id in 218 aa%2C and to Vibrio cholerae sigma E factor negative regulatory protein RseA TR:Q9KPA7 (EMBL:AE004316) (212 aa) fasta scores: E(): 2.4e-21%2C 42.9%25 id in 210 aa gene gene2682 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2712 YPO2713 YPO2713 rseB rseB 3040629 3041585 + sigma E factor regulatory protein Similar to Escherichia coli sigma E factor regulatory protein RseB SW:RSEB_ECOLI (P46186) (318 aa) fasta scores: E(): 0%2C 63.6%25 id in 313 aa%2C and to Salmonella typhimurium sigma E factor regulatory protein RseB TR:O84885 (EMBL:AF001386) (318 aa) fasta scores: E(): 0%2C61.4%25 id in 319 aa gene gene2683 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2713 YPO2714 YPO2714 rseC rseC 3041582 3042037 + sigma E factor regulatory protein Similar to Escherichia coli sigma E factor regulatory protein RseC SW:RSEC_ECOLI (P46187) (159 aa) fasta scores: E(): 5.5e-28%2C 53.0%25 id in 151 aa%2C and to Salmonella typhimurium sigma E factor regulatory protein RseC TR:O84886 (EMBL:AF001386) (159 aa) fasta scores: E(): 2.4e-27%2C 52.3%25 id in 151 aa gene gene2684 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2714 YPO2715 YPO2715 lepA lepA 3043412 3045211 + putative GTP-binding elongation factor Similar to Escherichia coli probable GTP-binding elongation factor protein LepA SW:LEPA_ECOLI (P07682) (599 aa) fasta scores: E(): 0%2C 92.3%25 id in 599 aa%2C and to Haemophilus influenzae GTP-binding protein LepA SW:LEPA_HAEIN (P43729) (598 aa) fasta scores: E(): 0%2C 87.6%25 id in 597 aa%3B~YPO2716%3B~one of 2 probable transmembrane helices predicted gene gene2686 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2715 YPO2715 YPO2715 lepA lepA 3042058 3042912 - putative membrane protein Poor database matches%2C some similarity to Rickettsia prowazekii hypothetical protein RP296 TR:Q9ZDN1 (EMBL:AJ235271) (274 aa) fasta scores: E(): 1.3%2C 22.5%25 id in 227 aa%2C and to Bacillus subtilis hypothetical protein YqjA SW:YQJA_BACSU (P54538) (322 aa) fasta scores: E(): 2.9%2C 23.6%25 id in 242 aa. CDS DNA has a low GC content%2C33.91%25. gene gene2685 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2715 YPO2717 YPO2717 lepB lepB 3045221 3046219 + signal peptidase I Similar to Salmonella typhimurium signal peptidase I LepB SW:LEP_SALTY (P23697) (324 aa) fasta scores: E(): 0%2C69.9%25 id in 332 aa%2C and to Escherichia coli signal peptidase I LepB SW:LEP_ECOLI (P00803) (324 aa) fasta scores: E(): 0%2C 68.1%25 id in 332 aa gene gene2687 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2717 YPO2718 YPO2718 rnc rnc 3046571 3047251 + ribonuclease III Similar to Escherichia coli ribonuclease III Rnc SW:RNC_ECOLI (P05797) (226 aa) fasta scores: E(): 0%2C 91.6%25 id in 226 aa%2C and to Salmonella typhimurium ribonuclease III Rnc SW:RNC_SALTY (Q56056) (224 aa) fasta scores: E(): 0%2C 89.4%25 id in 226 aa gene gene2688 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2718 YPO2719 YPO2719 era era 3047248 3048159 + putative GTP-binding protein Similar to Escherichia coli GTP-binding protein%2Cwith similarity to the yeast RAS proteins%2C Era SW:ERA_ECOLI (P06616) (301 aa) fasta scores: E(): 0%2C 84.9%25 id in 299 aa%2Cand to Salmonella typhimurium GTP-binding protein Era SW:ERA_SALTY (Q56057) (301 aa) fasta scores: E(): 0%2C 82.3%25 id in 299 aa gene gene2689 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2719 YPO2720 YPO2720 recO recO 3048169 3048894 + DNA repair protein Similar to Escherichia coli DNA repair protein RecO SW:RECO_ECOLI (P15027) (242 aa) fasta scores: E(): 0%2C 78.6%25 id in 234 aa%2C and to Salmonella typhimurium DNA repair protein RecO SW:RECO_SALTY (Q56058) (241 aa) fasta scores: E(): 0%2C 77.8%25 id in 234 aa gene gene2690 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2720 YPO2721 YPO2721 y1093 y1093 3049021 3050043 + transposase for insertion sequence IS100 Similar to Escherichia coli transposase for insertion sequence element IS21 IstA SW:ISTA_ECOLI (P15025) (390 aa) fasta scores: E(): 3e-27%2C 33.1%25 id in 329 aa. Identical to the previously sequenced Yersinia pestis%2CYersinia pseudotuberculosis%2C and Escherichia coli pesticin plasmid insertion sequence transposase Y1055 TR:P74993 (EMBL:U59875) (340 aa) fasta scores: E(): 0%2C 100.0%25 id in 340 aa gene gene2691 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2721 YPO2722 YPO2722 ypmt1.57c ypmt1.57c 3050040 3050822 + insertion sequence IS100%2C ATP-binding protein Similar to Escherichia coli insertion sequence IS21 putative ATP-binding protein%2C IstB SW:ISTB_ECOLI (P15026) (265 aa) fasta scores: E(): 0%2C 47.4%25 id in 249 aa. Also almost identical to Yersinia pestis and Escherichia coli putative IS100 transposase ypmt1.57c TR:Q9R3L5 (EMBL:AL117211) (260 aa) fasta scores: E(): 0%2C 99.6%25 id in 260 aa. gene gene2692 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2722 YPO2723 YPO2723 YPO2723 3050889 3051674 + putative OmpA family protein Poor database matches%2C similar to Pseudomonas aeruginosa hypothetical protein PA0078 TR:AAG03468 (EMBL:AE004447) (449 aa) fasta scores: E(): 3.7e-25%2C 35.1%25 id in 265 aa. This CDS may have been disrupted by the insertion of the upstream IS100 element.%3B~was marked partial gene gene2693 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2723 YPO2724 YPO2724 YPO2724 3051683 3055510 + putative membrane protein Similar to Pseudomonas aeruginosa hypothetical protein PA0077 TR:AAG03467 (EMBL:AE004446) (1101 aa) fasta scores: E(): 1.1e-30%2C 27.3%25 id in 1155 aa%2C and to Pseudomonas aeruginosa hypothetical protein PA1669 TR:AAG05058 (EMBL:AE004594) (1175 aa) fasta scores: E(): 2e-25%2C 23.3%25 id in 1240 aa gene gene2694 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2724 YPO2725 YPO2725 YPO2725 3055804 3058569 + conserved hypothetical protein Similar to the N-terminal regions of Pseudomonas aeruginosa hypothetical protein PA0095 TR:AAG03485 (EMBL:AE004448) (741 aa) fasta scores: E(): 0%2C 34.3%25 id in 696 aa%2C and Pseudomonas aeruginosa hypothetical protein PA0091 TR:AAG03481 (EMBL:AE004447) (643 aa) fasta scores: E(): 0%2C 35.8%25 id in 653 aa. The C-terminal region of the CDS contains a lengthy proline and theronine rich repeat (PPETTA x 27) gene gene2695 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2725 YPO2726 YPO2726 YPO2726 3058928 3059776 + hypothetical protein no significant database hits to the full length CDS. C-terminus is similar to Cowpox virus A-type inclusion protein AtiP TR:Q9YN87 (EMBL:Y18386) (151 aa) fasta scores: E(): 3.1%2C 22.7%25 id in 150 aa%2C and to Drosophila orena heat shock protein HSP70Aa TR:AAG24874 (EMBL:AF302410) (642 aa) fasta scores: E(): 6.7%2C 22.9%25 id in 210 aa gene gene2696 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2726 YPO2727 YPO2727 YPO2727 3059796 3060602 + conserved hypothetical protein Poor database matches%2C similar to Pseudomonas aeruginosa hypothetical protein PA0086 TR:AAG03476 (EMBL:AE004447) (281 aa) fasta scores: E(): 2.6e-30%2C 37.5%25 id in 259 aa gene gene2697 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2727 YPO2728 YPO2728 YPO2728 3060699 3061178 + conserved hypothetical protein Similar to Pseudomonas aeruginosa hypothetical protein PA0087 TR:AAG03477 (EMBL:AE004447) (169 aa) fasta scores: E(): 8.2e-10%2C 30.8%25 id in 156 aa%2C and to Edwardsiella ictaluri putative protein EIP19 TR:O52404 (EMBL:AF037441) (158 aa) fasta scores: E(): 4.9e-06%2C 31.3%25 id in 150 aa gene gene2698 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2728 YPO2729 YPO2729 YPO2729 3061203 3061550 + putative membrane protein Similar to C-terminus of Salmonella typhimurium hypothetical 17.3 kDa protein TR:Q9X446 (EMBL:AF095578) (148 aa) fasta scores: E(): 0.19%2C 25.0%25 id in 112 aa%2C and to N-terminus of Xylella fastidiosa beta-lactamase induction signal transducer protein XF0165 TR:Q9PGY1 (EMBL:AE003870) (509 aa) fasta scores: E(): 1.7%2C 26.8%25 id in 112 aa. Doubtful CDS gene gene2699 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2729 YPO2730 YPO2730 YPO2730 3061607 3061948 - conserved hypothetical protein Similar to Escherichia coli hypothetical protein PhnA SW:PHNA_ECOLI (P16680) (111 aa) fasta scores: E(): 1.6e-30%2C 71.2%25 id in 111 aa%2C and to Pseudomonas aeruginosa hypothetical protein PA0128 TR:AAG03518 (EMBL:AE004450) (113 aa) fasta scores: E(): 2e-28%2C 63.4%25 id in 112 aa gene gene2700 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2730 YPO2731 YPO2731 YPO2731 3062324 3064363 - putative membrane protein Poor database matches%2C similar to Escherichia coli hypothetical protein YciQ SW:YCIQ_ECOLI (P45848) (631 aa) fasta scores: E(): 1.3e-16%2C 29.0%25 id in 645 aa. C-terminal region is glycine and serine rich. gene gene2701 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2731 YPO2732 YPO2732 3 3 3064368 3064910 - putative exported protein Similar to Listeria monocytogenes membrane protein LemA TR:P71452 (EMBL:U66186) (185 aa) fasta scores: E(): 2e-19%2C 39.6%25 id in 182 aa%2C and to Streptococcus gordonii LemA-like protein TR:AAG23700 (EMBL:AF017421) (189 aa) fasta scores: E(): 2.9e-20%2C 37.8%25 id in 185 aa gene gene2702 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2732 YPO2733 YPO2733 YPO2733 3065526 3065993 + putative exported protein No significant database matches. CDS DNA has a low GC content%2C 35.47%25. gene gene2703 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2733 YPO2734 YPO2734 ccmA ccmA 3066438 3067094 + putative heme exporter protein A Similar to Escherichia coli heme exporter protein A CcmA SW:CCMA_ECOLI (P33931) (207 aa) fasta scores: E(): 0%2C56.3%25 id in 206 aa%2C and to Vibrio cholerae heme exporter protein A vc2057 TR:Q9KQE3 (EMBL:AE004279) (207 aa) fasta scores: E(): 0%2C 65.7%25 id in 207 aa gene gene2704 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2734 YPO2735 YPO2735 ccmB ccmB 3067064 3067723 + heme exporter protein B Similar to Escherichia coli heme exporter protein B CcmB SW:CCMB_ECOLI (P33930) (220 aa) fasta scores: E(): 0%2C77.2%25 id in 219 aa%2C and to Pantoea citrea CcmB-like protein CcmB TR:Q9Z650 (EMBL:AF103874) (219 aa) fasta scores: E(): 0%2C 73.1%25 id in 219 aa gene gene2705 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2735 YPO2736 YPO2736 ccmC ccmC 3067786 3068523 + putative heme exporter protein C Similar to Escherichia coli heme exporter protein C CcmC SW:CCMC_ECOLI (P33929) (245 aa) fasta scores: E(): 0%2C75.8%25 id in 244 aa%2C and to Pantoea citrea CcmC-like protein CcmC TR:Q9Z649 (EMBL:AF103874) (246 aa) fasta scores: E(): 0%2C 76.9%25 id in 242 aa gene gene2706 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2736 YPO2737 YPO2737 ccmD ccmD 3068520 3068822 + putative heme exporter protein D Similar to Escherichia coli heme exporter protein D CcmD SW:CCMD_ECOLI (P36770) (69 aa) fasta scores: E(): 2.7e-10%2C 50.7%25 id in 69 aa%2C and to Pantoea citrea CcmD-like protein CcmD TR:Q9Z648 (EMBL:AF103874) (77 aa) fasta scores: E(): 3.6e-11%2C 53.9%25 id in 76 aa. CDS extended at the C-terminus in comparison to orthologues. gene gene2707 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2737 YPO2738 YPO2738 ccmE ccmE 3068819 3069313 + putative cytochrome c-type biogenesis protein Similar to Escherichia coli cytochrome c-type biogenesis protein CcmE SW:CCME_ECOLI (P33928) (159 aa) fasta scores: E(): 0%2C 67.7%25 id in 155 aa%2C and to Pantoea citrea CcmE-like protein TR:Q9Z647 (EMBL:AF103874) (158 aa) fasta scores: E(): 0%2C 64.2%25 id in 148 aa gene gene2708 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2738 YPO2739 YPO2739 ccmF ccmF 3069310 3071280 + putative cytochrome c-type biogenesis protein Similar to Escherichia coli cytochrome c-type biogenesis protein CcmF SW:CCMF_ECOLI (P33927) (647 aa) fasta scores: E(): 0%2C 71.1%25 id in 654 aa%2C and to Pantoea citrea CcmF-like protein TR:Q9Z646 (EMBL:AF103874) (655 aa) fasta scores: E(): 0%2C 78.8%25 id in 646 aa gene gene2709 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2739 YPO2740 YPO2740 ccmG ccmG 3071277 3071843 + thiol:disulfide interchange protein DsbE Similar to Escherichia coli thiol:disulfide interchange protein DsbE SW:DSBE_ECOLI (P33926) (185 aa) fasta scores: E(): 0%2C 73.3%25 id in 176 aa%2C and to Pantoea citrea CcmG-like protein TR:Q9Z645 (EMBL:AF103874) (185 aa) fasta scores: E(): 0%2C 75.0%25 id in 176 aa gene gene2710 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2740 YPO2741 YPO2741 ccmH ccmH 3071840 3073578 + putative cytochrome c-type biogenesis protein Similar to Rhizobium meliloti cytochrome c-type biogenesis protein CycH SW:CYCH_RHIME (P45400) (381 aa) fasta scores: E(): 1.4e-06%2C 27.491%25 id in 291 aa%2C and to Escherichia coli cytochrome C-type biogenesis protein CcmH SW:CCMH_ECOLI (P33925) (350 aa) fasta scores: E(): 6.6e-36%2C49.091%25 id in 220 aa%3B~YPO2743%3B~one of 2 probable transmembrane helices predicted gene gene2711 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2741 YPO2742 YPO2742 YPO2742 3072361 3072420 + gene gene2712 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2742 YPO2742 YPO2742 YPO2742 3072607 3072675 + gene gene2713 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2742 YPO2743 YPO2743 vacJ vacJ 3073614 3074378 + VacJ lipoprotein Probable lipoprotein%2C similar to Shigella flexneri virulence protein required for intercellular spreading%2CVacJ SW:VACJ_SHIFL (P43262) (251 aa) fasta scores: E(): 0%2C75.0%25 id in 252 aa%2C and to Escherichia coli lipoprotein VacJ SW:VACJ_ECOLI (P76506) (251 aa) fasta scores: E(): 0%2C75.0%25 id in 252 aa gene gene2714 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2743 YPO2744 YPO2744 fadL fadL 3074485 3075756 - putative long-chain fatty acid transport protein Similar to Escherichia coli long-chain fatty acid transport protein precursor FadL SW:FADL_ECOLI (P10384) (448 aa) fasta scores: E(): 0%2C 63.7%25 id in 455 aa%2C and to Vibrio cholerae long-chain fatty acid transport protein VCA0862 TR:Q9KL84 (EMBL:AE004414) (412 aa) fasta scores: E(): 0%2C 43.9%25 id in 424 aa gene gene2715 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2744 YPO2745 YPO2745 YPO2745 3076164 3076460 + conserved hypothetical protein Similar to Escherichia coli hypothetical protein YfcZ SW:YFCZ_ECOLI (P76504) (94 aa) fasta scores: E(): 8e-24%2C 63.8%25 id in 94 aa%2C and to Haemophilus influenzae hypothetical protein HI0400 SW:Y400_HAEIN (P44686) (95 aa) fasta scores: E(): 3e-16%2C 47.8%25 id in 92 aa gene gene2716 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2745 YPO2746 YPO2746 YPO2746 3076747 3078057 + putative 3-ketoacyl-CoA thiolase Similar to Rattus norvegicus mitochondrial trifunctonal enzyme beta subunit%2C 3-ketoacyl-CoA thiolase SW:ECHB_RAT (Q60587) (475 aa) fasta scores: E(): 0%2C 44.0%25 id in 420 aa%2C and to Escherichia coli probable 3-ketoacyl-CoA thiolase YfcY SW:YFCY_ECOLI (P76503) (436 aa) fasta scores: E(): 0%2C 80.5%25 id in 436 aa gene gene2717 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2746 YPO2747 YPO2747 faoA faoA 3078057 3080381 + putative fatty oxidation complex alpha subunit%2Cenoyl-CoA hydratase Similar to Pseudomonas fragi fatty oxidation complex alpha subunit%2C enoyl-CoA hydratase FaoA SW:FAOB_PSEFR (P28793) (715 aa) fasta scores: E(): 0%2C 36.1%25 id in 732 aa%2Cand to Escherichia coli putative fatty oxidation complex alpha subunit%2C enoyl-CoA hydratase YfcX SW:YFCX_ECOLI (P77399) (714 aa) fasta scores: E(): 0%2C 64.0%25 id in 726 aa. CDS extended at the N-terminus%2C possible alternative translational start. CDS contains insertion relative other orthologues%2C around codons 622 to 641%2C effect on function unknown gene gene2718 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2747 YPO2748 YPO2748 sixA sixA 3080950 3081441 + putative phosphohistidine phosphatase Similar to Escherichia coli phosphohistidine phosphatase SixA SW:SIXA_ECOLI (P76502) (161 aa) fasta scores: E(): 0%2C 64.6%25 id in 161 aa%2C and to Vibrio cholerae phosphohistidine phosphatase VC2070 TR:Q9KQD0 (EMBL:AE004281) (157 aa) fasta scores: E(): 5.2e-18%2C 42.3%25 id in 156 aa gene gene2719 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2748 YPO2749 YPO2749 YPO2749 3081827 3082357 - conserved hypothetical protein Similar to Escherichia coli hypothetical protein YfcN SW:YFCN_ECOLI (P77458) (183 aa) fasta scores: E(): 0%2C71.0%25 id in 176 aa%2C and to Vibrio cholerae hypothetical protein VC2119 TR:Q9KQ82 (EMBL:AE004285) (186 aa) fasta scores: E(): 0%2C 58.1%25 id in 167 aa gene gene2720 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2749 YPO2750 YPO2750 YPO2750 3082727 3083659 + conserved hypothetical protein Similar to C-terminal region of Escherichia coli hypothetical adenine-specific methylase YfcB SW:YFCB_ECOLI (P39199) (421 aa) fasta scores: E(): 0%2C 82.3%25 id in 310 aa%2Cand to the full length Vibrio cholerae putative adenine-specific methylase VC2118 TR:Q9KQ83 (EMBL:AE004285) (314 aa) fasta scores: E(): 0%2C 74.2%25 id in 310 aa. CDS simlilar in length to majority of orthologues%2C E. coli protein may be extended at the N-terminus gene gene2721 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2750 YPO2751 YPO2751 aroC aroC 3083736 3084821 + chorismate synthase Similar to Escherichia coli chorismate synthase AroC SW:AROC_ECOLI (P12008) (360 aa) fasta scores: E(): 0%2C 83.6%25 id in 360 aa%2C and to Salmonella typhi chorismate synthase AroC SW:AROC_SALTI (P16280) (360 aa) fasta scores: E(): 0%2C82.2%25 id in 360 aa gene gene2722 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2751 YPO2752 YPO2752 mepA mepA 3084827 3085654 + putative penicillin-insensitive murein endopeptidase Similar to Escherichia coli penicillin-insensitive murein endopeptidase MepA SW:MEPA_ECOLI (P14007) (274 aa) fasta scores: E(): 0%2C 69.9%25 id in 272 aa%2C and to Haemophilus influenzae penicillin-insensitive murein endopeptidase precursor MepA SW:MEPA_HAEIN (P44566) (286 aa) fasta scores: E(): 0%2C 46.7%25 id in 276 aa gene gene2723 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2752 YPO2753 YPO2753 yfcA yfcA 3085658 3086464 + putative membrane protein Similar to Escherichia coli hypothetical protein YfcA SW:YFCA_ECOLI (P14008) (269 aa) fasta scores: E(): 0%2C72.1%25 id in 262 aa%2C and to Haemophilus influenzae hypothetical protein HI0198 SW:YFCA_HAEIN (P46490) (255 aa) fasta scores: E(): 0%2C 54.7%25 id in 247 aa gene gene2724 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2753 YPO2754 YPO2754 YPO2754 3086564 3087106 + conserved hypothetical protein Similar to Escherichia coli hypothetical protein YfcM SW:YFCM_ECOLI (P76938) (182 aa) fasta scores: E(): 0%2C70.1%25 id in 177 aa%2C and to Vibrio cholerae hypothetical protein VC2113 TR:Q9KQ88 (EMBL:AE004285) (176 aa) fasta scores: E(): 0%2C 60.1%25 id in 173 aa gene gene2725 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2754 YPO2755 YPO2755 YPO2755 3087164 3087442 + conserved hypothetical protein Similar to Escherichia coli hypothetical protein YfcL SW:YFCL_ECOLI (P76496) (92 aa) fasta scores: E(): 4.4e-21%2C 66.3%25 id in 89 aa%2C and to Vibrio cholerae hypothetical protein VC2112 TR:Q9KQ89 (EMBL:AE004285) (87 aa) fasta scores: E(): 2e-12%2C 49.4%25 id in 89 aa gene gene2726 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2755 YPO2756 YPO2756 YPO2756 3087620 3089689 - conserved hypothetical protein Similar to Escherichia coli hypothetical protein B2324 (EMBL:AE000321) (688 aa) fasta scores: E(): 0%2C 60.6%25 id in 680 aa%2C and to Vibrio cholerae hypothetical protein VC2110 TR:Q9KQ91 (EMBL:AE004284) (674 aa) fasta scores: E(): 0%2C 50.5%25 id in 679 aa. CDS is truncated at the N-terminus in comparison to the E. coli protein%2C but is similar in length to other orthologues gene gene2727 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2756 YPO2757 YPO2757 fabB fabB 3089861 3091084 + 3-oxoacyl-[acyl-carrier-protein] synthase I Similar to Escherichia coli 3-oxoacyl-[acyl-carrier-protein] synthase I FabB SW:FABB_ECOLI (P14926) (406 aa) fasta scores: E(): 0%2C 85.3%25 id in 407 aa%2C and to Haemophilus influenzae 3-oxoacyl-[acyl-carrier-protein] synthase I FabB SW:FABB_HAEIN (P43710) (406 aa) fasta scores: E(): 0%2C 73.2%25 id in 406 aa gene gene2728 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2757 YPO2758 YPO2758 YPO2758 3091492 3092187 - putative aspartate/glutamate racemase Similar to Streptococcus thermophilus aspartate racemase SW:RACD_STRTR (P29079) (243 aa) fasta scores: E(): 2.4e-11%2C 23.9%25 id in 234 aa%2C and to Escherichia coli hypothetical protein YgeA SW:YGEA_ECOLI (P03813) (230 aa) fasta scores: E(): 0%2C 58.5%25 id in 229 aa gene gene2729 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2758 YPO2759 YPO2759 mrpA mrpA 3092975 3093505 + putative mannose-resistant/Proteus-like fimbrial protein Similar to Serratia marcescens fimbria A protein SmfA SW:FMA_SERMA (P13421) (174 aa) fasta scores: E(): 1.4e-30%2C 53.8%25 id in 169 aa%2C and to Proteus mirabilis major MR/P (mannose-resistant/Proteus-like) fimbrial protein MrpA SW:MRPA_PROMI (Q03011) (175 aa) fasta scores: E(): 1.1e-21%2C46.5%25 id in 172 aa gene gene2730 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2759 YPO2760 YPO2760 flk flk 3093847 3094884 - putative flagellar assembly regulatory protein%2CFlk Similar to Salmonella typhimurium probable flagellar assembly regulatory protein Flk TR:O06951 (EMBL:U77618) (333 aa) fasta scores: E(): 0%2C 47.5%25 id in 343 aa%2C and to Escherichia coli hypothetical protein Div SW:DIV_ECOLI (P15286) (331 aa) fasta scores: E(): 0%2C 42.0%25 id in 345 aa gene gene2731 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2760 YPO2761 YPO2761 YPO2761 3095169 3096086 - putative membrane protein Similar to Erwinia chrysanthemi extracellular enzyme regulatory protein%2C PecM SW:PECM_ERWCH (P42194) (297 aa) fasta scores: E(): 4.5e-10%2C 26.1%25 id in 295 aa%2C and to Pseudomonas aeruginosa hypothetical protein PA4287 TR:AAG07675 (EMBL:AE004845) (296 aa) fasta scores: E(): 0%2C46.9%25 id in 290 aa gene gene2732 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2761 YPO2762 YPO2762 YPO2762 3096312 3097097 + putative AraC-family regulatory protein Similar to Vibrio cholerae putative transcriptional AraC/XylS family regulator VCA0937 TR:Q9KL12 (EMBL:AE004420) (263 aa) fasta scores: E(): 0%2C 45.6%25 id in 241 aa%2C and to Vibrio cholerae putative AraC type transcriptional regulator TR:Q9L4Y9 (EMBL:AF262020) (241 aa) fasta scores: E(): 0%2C 46.8%25 id in 233 aa gene gene2733 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2762 YPO2763 YPO2763 pdxB pdxB 3097144 3098271 + putative D-isomer specific 2-hydroxyacid dehydrogenase Similar to Escherichia coli probable erythronate-4-phosphate dehydrogenase PdxB SW:PDXB_ECOLI (P05459) (378 aa) fasta scores: E(): 0%2C 72.4%25 id in 370 aa%2Cand to Vibrio cholerae possible erythronate-4-phosphate dehydrogenase VC2108 TR:Q9KQ92 (EMBL:AE004284) (387 aa) fasta scores: E(): 0%2C 49.3%25 id in 375 aa gene gene2734 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2763 YPO2764 YPO2764 tnp tnp 3098415 3098873 - transposase for the IS1541 insertion element Similar to Salmonella typhimurium%2C and Salmonella typhi transposase for insertion sequence IS200 TnpA SW:T200_SALTY (Q57334) (152 aa) fasta scores: E(): 0%2C 94.1%25 id in 152 aa. Identical to the Yersinia pseudotuberculosis IS1541-like element transposase Tnp TR:Q9X9F5 (EMBL:AJ238014) (152 aa) fasta scores: E(): 0%2C 100.0%25 id in 152 aa gene gene2735 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2764 YPO2765 YPO2765 asd asd 3099152 3100162 + putative aspartate-semialdehyde dehydrogenase Similar to Shewanella violacea aspartate-semialdehyde dehydrogenase Asd SW:DHAS_SHEVI (Q56734) (338 aa) fasta scores: E(): 0%2C 44.6%25 id in 336 aa%2Cand to Escherichia coli hypothetical protein Usg-1 SW:USG_ECOLI (P08390) (337 aa) fasta scores: E(): 0%2C 71.8%25 id in 337 aa gene gene2736 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2765 YPO2766 YPO2766 asuC asuC 3100249 3101043 + tRNA pseudouridine synthase A Similar to Escherichia coli tRNA pseudouridine synthase A HisT SW:TRUA_ECOLI (P07649) (270 aa) fasta scores: E(): 0%2C 80.4%25 id in 260 aa%2C and to Vibrio cholerae tRNA pseudouridine synthase A VC0999 TR:Q9KTA4 (EMBL:AE004182) (264 aa) fasta scores: E(): 0%2C 69.8%25 id in 262 aa gene gene2737 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2766 YPO2767 YPO2767 dedA dedA 3101200 3101862 + putative membrane protein Similar to Escherichia coli hypothetical protein protein DedA SW:DEDA_ECOLI (P09548) (219 aa) fasta scores: E(): 0%2C 85.6%25 id in 216 aa%2C and to Neisseria meningitidis (serogroup A) hypothetical protein DedA TR:Q9JRE5 (EMBL:AL162755) (214 aa) fasta scores: E(): 0%2C 66.4%25 id in 211 aa gene gene2738 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2767 YPO2768 YPO2768 accD accD 3102093 3103007 + acetyl-coenzyme A carboxylase carboxyl transferase subunit beta Similar to Escherichia coli acetyl-coenzyme A carboxylase carboxyl transferase subunit beta AccD SW:ACCD_ECOLI (P08193) (304 aa) fasta scores: E(): 0%2C 86.2%25 id in 298 aa%2C and to Vibrio cholerae acetyl-CoA carboxylase%2C carboxyl transferase beta subunit VC1000 TR:Q9KTA3 (EMBL:AE004182) (308 aa) fasta scores: E(): 0%2C76.0%25 id in 288 aa gene gene2739 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2768 YPO2769 YPO2769 dedC dedC 3103256 3104560 + putative FolC bifunctional protein Similar to Escherichia coli folylpolyglutamate synthase and dihydrofolate synthase bifunctional protein%2CFolC SW:FOLC_ECOLI (P08192) (422 aa) fasta scores: E(): 0%2C65.3%25 id in 432 aa%2C and to Haemophilus influenzae folylpolyglutamate synthase FolC SW:FOLC_HAEIN (P43775) (437 aa) fasta scores: E(): 0%2C 51.5%25 id in 454 aa gene gene2740 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2769 YPO2770 YPO2770 dedD dedD 3104680 3105402 + putative membrane protein Similar to Escherichia coli hypothetical protein DedD SW:DEDD_ECOLI (P09549) (211 aa) fasta scores: E(): 8.9e-18%2C 56.1%25 id in 230 aa%2C and to Vibrio cholerae DedD hypothetical protein VC1002 TR:Q9KTA1 (EMBL:AE004182) (198 aa) fasta scores: E(): 5.7e-07%2C 35.5%25 id in 234 aa gene gene2741 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2770 YPO2771 YPO2771 cvpA cvpA 3105714 3106223 + putative colicin V production protein Similar to Escherichia coli colicin V production protein CvpA SW:CVPA_ECOLI (P08550) (162 aa) fasta scores: E(): 0%2C 83.1%25 id in 160 aa%2C and to Haemophilus influenzae possible colicin V production protein CvpA SW:CVPA_HAEIN (P45108) (163 aa) fasta scores: E(): 0%2C 67.5%25 id in 160 aa gene gene2742 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2771 YPO2772 YPO2772 purF purF 3106236 3107753 + amidophosphoribosyltransferase Similar to Escherichia coli amidophosphoribosyltransferase PurF SW:PUR1_ECOLI (P00496) (504 aa) fasta scores: E(): 0%2C 87.1%25 id in 504 aa%2C and to Vibrio cholerae amidophosphoribosyltransferase VC1004 TR:Q9KT99 (EMBL:AE004182) (504 aa) fasta scores: E(): 0%2C74.1%25 id in 506 aa gene gene2743 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2772 YPO2773 YPO2773 ubiX ubiX 3108000 3108572 + probable 3-octaprenyl-4-hydroxybenzoate carboxy-lyase Similar to Escherichia coli probable 3-octaprenyl-4-hydroxybenzoate carboxy-lyase UbiX SW:UBIX_ECOLI (P09550) (189 aa) fasta scores: E(): 0%2C 79.3%25 id in 188 aa%2C and to Pasteurella multocida hypothetical protein UbiX TR:AAK02784 (EMBL:AE006106) (193 aa) fasta scores: E(): 0%2C 72.3%25 id in 188 aa gene gene2744 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2773 YPO2774 YPO2774 hisJ hisJ 3109091 3109879 + histidine-binding periplasmic protein Similar to Salmonella typhimurium histidine-binding periplasmic protein precursor HisJ SW:HISJ_SALTY (P02910) (260 aa) fasta scores: E(): 0%2C 76.4%25 id in 258 aa%2C and to Escherichia coli histidine-binding periplasmic protein precursor HisJ SW:HISJ_ECOLI (P39182) (260 aa) fasta scores: E(): 0%2C 76.4%25 id in 259 aa gene gene2745 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2774 YPO2775 YPO2775 hisQ hisQ 3109982 3110668 + histidine transport system permease protein HisQ Similar to Salmonella typhimurium histidine transport system permease protein HisQ SW:HISQ_SALTY (P02913) (228 aa) fasta scores: E(): 0%2C 78.1%25 id in 228 aa%2Cand to Escherichia coli histidine transport system permease protein HisQ SW:HISQ_ECOLI (P52094) (228 aa) fasta scores: E(): 0%2C 77.6%25 id in 228 aa gene gene2746 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2775 YPO2776 YPO2776 hisM hisM 3110665 3111381 + histidine transport system permease protein HisM Similar to Salmonella typhimurium histidine transport system permease protein HisM SW:HISM_SALTY (P02912) (235 aa) fasta scores: E(): 0%2C 82.6%25 id in 235 aa%2Cand to Escherichia coli histidine transport system permease protein HisM SW:HISM_ECOLI (P20091) (238 aa) fasta scores: E(): 0%2C 81.5%25 id in 238 aa gene gene2747 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2776 YPO2777 YPO2777 hisP hisP 3111395 3112192 + histidine transport ATP-binding protein HisP Similar to Salmonella typhimurium histidine transport ATP-binding protein HisP SW:HISP_SALTY (P02915) (258 aa) fasta scores: E(): 0%2C 85.5%25 id in 256 aa%2C and to Escherichia coli histidine transport ATP-binding protein HisP SW:HISP_ECOLI (P07109) (257 aa) fasta scores: E(): 0%2C85.9%25 id in 256 aa. Similar to YPO1848 (50.4%25 identity in 250 aa overlap)%2C YPO2514 (50.2%25 identity in 247 aa overlap) and YPO3254 (53.0%25 identity in 234 aa overlap) gene gene2748 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2777 YPO2778 YPO2778 YPO2778 3112316 3113224 - conserved hypothetical protein Similar to Escherichia coli hypothetical protein YfcH SW:YFCH_ECOLI (P77775) (297 aa) fasta scores: E(): 0%2C68.8%25 id in 298 aa%2C and to Pseudomonas aeruginosa hypothetical protein PA4656 TR:AAG08043 (EMBL:AE004879) (305 aa) fasta scores: E(): 0%2C 49.3%25 id in 298 aa gene gene2749 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2778 YPO2779 YPO2779 YPO2779 3113572 3114270 + conserved hypothetical protein Similar to internal region of Acetobacter xylinum c-di-GMP phosphodiesterase A PdeA3 TR:O87378 (EMBL:AF052519) (740 aa) fasta scores: E(): 0.0053%2C 24.7%25 id in 223 aa%2C and to the full length Escherichia coli hypothetical protein YdiV SW:YDIV_ECOLI (P76204) (237 aa) fasta scores: E(): 1.2e-14%2C 28.0%25 id in 225 aa gene gene2750 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2779 YPO2780 YPO2780 YPO2780 3114471 3115046 + conserved hypothetical protein Similar to Escherichia coli hypothetical protein YfcE SW:YFCE_ECOLI (P76495) (184 aa) fasta scores: E(): 1.3e-30%2C 63.2%25 id in 171 aa%2C and to Vibrio cholerae hypothetical protein VC0981 TR:Q9KTC2 (EMBL:AE004179) (189 aa) fasta scores: E(): 3.5e-25%2C 51.8%25 id in 170 aa. Contains a 2xPAAVAESLNAYK between repeat codons 48..71. gene gene2751 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2780 YPO2781 YPO2781 YPO2781 3115268 3115816 + conserved hypothetical protein Similar to Escherichia coli putative regulator TR:P76494 (EMBL:AE000319) (180 aa) fasta scores: E(): 0%2C79.7%25 id in 172 aa%2C and to Pseudomonas aeruginosa hypothetical protein PA4841 TR:AAG08226 (EMBL:AE004897) (178 aa) fasta scores: E(): 8.3e-23%2C 45.7%25 id in 162 aa gene gene2752 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2781 YPO2782 YPO2782 YPO2782 3115933 3117189 - putative membrane protein Similar to Bacillus halodurans hypothetical protein BH0223 TR:Q9KG89 (EMBL:AP001507) (432 aa) fasta scores: E(): 0%2C 39.3%25 id in 422 aa%2C and to N-terminal region of Streptomyces coelicolor putative integral membrane protein SCJ21.17C TR:Q9S1Z0 (EMBL:AL109747) (516 aa) fasta scores: E(): 0%2C 48.2%25 id in 434 aa gene gene2753 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2782 YPO2783 YPO2783 y1062 y1062 3117329 3118537 + transposase for the IS285 insertion element Previously sequenced Yersinia pestis transposase Y1062 or Ypmt1.80C TR:O68779 (EMBL:AF053947) (402 aa) fasta scores: E(): 0%2C 100.0%25 id in 402 aa. gene gene2754 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2783 YPO2784 YPO2784 pbpC pbpC 3118574 3120100 + penicillin-binding protein 1C (partial) Similar to Escherichia coli penicillin-binding protein 1C PbpC TR:P76988 (EMBL:U88571) (650 aa) fasta scores: E(): 0%2C 30.6%25 id in 509 aa%2C and to Xylella fastidiosa bifunctional penicillin binding protein 1C XF2235 TR:Q9PBA9 (EMBL:AE004036) (796 aa) fasta scores: E(): 0%2C 30.3%25 id in 525 aa. Truncation of the CDS due to the insertion of IS235 upstream. pseudogene gene2755 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2784 YPO2785 YPO2785 nlp nlp 3120316 3120561 - putative DNA-binding protein Similar to Bacteriophage Mu DNA-binding protein Ner SW:NER_BPMU (P06020) (74 aa) fasta scores: E(): 3.4e-13%2C60.9%25 id in 64 aa%2C and to Escherichia coli sugar fermentation stimulation protein B Nlp SW:SFSB_ECOLI (P18837) (92 aa) fasta scores: E(): 3e-16%2C 67.2%25 id in 67 aa%2C and to Photorhabdus luminescens possible DNA-binding protein Pln TR:Q9RG38 (EMBL:AF157489) (70 aa) fasta scores: E(): 9.2e-18%2C 66.7%25 id in 69 aa gene gene2756 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2785 YPO2788 YPO2788 YPO2788 3121234 3121815 + hypothetical protein no significant database hits gene gene2757 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2788 YPO2790 YPO2790 YPO2790 3122083 3122484 + putative membrane protein Doubtful CDS. Poor database matches%2C similar to internal region of Carabus fraterculus NADH dehydrogenase subunit 5 TR:BAB17812 (EMBL:AB050761) (355 aa) fasta scores: E(): 0.75%2C 25.9%25 id in 147 aa. Similar to YPO2792 (74.6%25 identity in 126 aa overlap) gene gene2758 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2790 YPO2792 YPO2792 YPO2792 3122738 3123118 + putative membrane protein Doubtful CDS. No significant database matches to the full length CDS. Similar to Saccharomyces cerevisiae chitin synthase 1 SW:CHS1_YEAST (P08004) (1131 aa) fasta scores: E(): 2.1%2C 22.8%25 id in 92 aa. Similar to YPO2790 (74.6%25 identity in 126 aa overlap) gene gene2759 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2792 YPO2793 YPO2793 YPO2793 3123130 3123702 - putative membrane protein Similar to N-terminus of Escherichia coli hypothetical protein YhhZ SW:YHHZ_ECOLI (P46855) (392 aa) fasta scores: E(): 3e-15%2C 39.3%25 id in 168 aa%2C and to Pseudomonas aeruginosa secreted protein Hcp TR:AAG03652 (EMBL:AE004939) (172 aa) fasta scores: E(): 0.00027%2C 39.8%25 id in 171 aa. Similar to YPO2962 (64.8%25 identity in 159 aa overlap)%2C YPO2868 (59.1%25 identity in 159 aa overlap) and YPO1872 (57.9%25 identity in 114 aa overlap) gene gene2760 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2793 YPO2794 YPO2794 YPO2794 3123726 3123977 - hypothetical protein no significant database hits gene gene2761 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2794 YPO2795 YPO2795 YPO2795 3124016 3124255 - hypothetical protein Weakly similar to Methanococcus jannaschii hypothetical protein MJ0919 SW:Y919_METJA (Q58329) (149 aa) fasta scores: E(): 7.5%2C 32.3%25 id in 65 aa gene gene2762 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2795 YPO2796 YPO2796 yapC yapC 3125064 3126980 + putaive autotransporter protein Previously sequenced as Yersinia pestis putative autotransporter protein YapC TR:CAC14222 (EMBL:AJ277626) (638 aa) fasta scores: E(): 0%2C 100.0%25 id in 638 aa%2C Similar to Escherichia coli invasion locus B protein TibA TR:Q9XD84 (EMBL:AF109215) (989 aa) fasta scores: E(): 0%2C 31.7%25 id in 666 aa gene gene2763 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2796 YPO2797 YPO2797 YPO2797 3127515 3128096 + hypothetical protein no significant database hits gene gene2764 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2797 YPO2798 YPO2798 YPO2798 3128111 3128461 - conserved hypothetical protein (partial) Similar to the N-terminal regions of Escherichia coli hypothetical protein YcfD SW:YCFD_ECOLI (P27431) (373 aa) fasta scores: E(): 1.7e-25%2C 55.3%25 id in 114 aa%2C and Xylella fastidiosa hypothetical protein XF1552 TR:Q9PD27 (EMBL:AE003985) (422 aa) fasta scores: E(): 2.3%2C 36.2%25 id in 47 aa. Truncation of the CDS by the insertion of upstream IS285.%3B~was marked partial gene gene2765 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2798 YPO2799 YPO2799 y1062 y1062 3128498 3129706 - transposase for the IS285 insertion element Previously sequenced Yersinia pestis transposase Y1062 or Ypmt1.80C TR:O68779 (EMBL:AF053947) (402 aa) fasta scores: E(): 0%2C 100.0%25 id in 402 aa. gene gene2766 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2799 YPO2801 YPO2801 YPO2801 3130158 3132365 + putative membrane protein No significant database matches to the full length CDS. Similar to N-terminal region of Herpetosiphon aurantiacus methyltransferase and restriction endonuclease TR:Q47967 (EMBL:X55138) (336 aa) fasta scores: E(): 5.6e-18%2C 28.1%25 id in 359 aa gene gene2767 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2801 YPO2802 YPO2802 YPO2802 3132358 3132888 + putative membrane protein No significant database matches gene gene2768 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2802 YPO2803 YPO2803 bglB bglB 3133047 3135428 + putative beta-glucosidase Similar to Thermotoga neapolitana beta-glucosidase BglB TR:Q60038 (EMBL:Z77856) (720 aa) fasta scores: E(): 0%2C40.5%25 id in 719 aa%2C and to Thermotoga maritima possible beta-glucosidase TM0025 TR:Q9WXN2 (EMBL:AE001690) (721 aa) fasta scores: E(): 0%2C 41.7%25 id in 729 aa gene gene2769 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2803 YPO2804 YPO2804 YPO2804 3135507 3137135 - hypothetical protein no significant database hits gene gene2770 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2804 YPO2805 YPO2805 YPO2805 3137566 3138459 + putative aldo/keto reductase Similar to Corynebacterium sp 2%2C5-diketo-D-gluconic acid reductase TR:P06632 (EMBL:M12799) (278 aa) fasta scores: E(): 0%2C 45.0%25 id in 262 aa%2C and to Thermotoga maritima aldo/keto reductase family oxidoreductase TM1009 TR:Q9X0A2 (EMBL:AE001762) (286 aa) fasta scores: E(): 0%2C60.1%25 id in 283 aa gene gene2771 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2805 YPO2806 YPO2806 YPO2806 3138485 3139474 + putative aldo/keto reductase Similar to Thermotoga maritima aldo/keto reductase family oxidoreductase TM1006 TR:Q9X0A1 (EMBL:AE001762) (333 aa) fasta scores: E(): 0%2C 62.0%25 id in 326 aa%2C and to Helicobacter pylori putative aldo-keto reductase HP1193 TR:O25804 (EMBL:AE000625) (329 aa) fasta scores: E(): 0%2C51.5%25 id in 332 aa gene gene2772 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2806 YPO2807 YPO2807 ptxR ptxR 3139529 3140422 - putative LysR-family transcriptional regulatory protein Similar to Pseudomonas aeruginosa exotoxin A positive transcriptional regulator PtxR TR:AAG05646 (EMBL:U35068) (312 aa) fasta scores: E(): 4.1e-22%2C 31.6%25 id in 294 aa%2C and to Xylella fastidiosa transcriptional regulator XF1752 TR:Q9PCM6 (EMBL:AE003998) (324 aa) fasta scores: E(): 0%2C 52.9%25 id in 297 aa gene gene2773 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2807 YPO2808 YPO2808 y1093 y1093 3140516 3141538 + transposase for insertion sequence IS100 Similar to Escherichia coli transposase for insertion sequence element IS21 IstA SW:ISTA_ECOLI (P15025) (390 aa) fasta scores: E(): 3e-27%2C 33.1%25 id in 329 aa. Identical to the previously sequenced Yersinia pestis%2CYersinia pseudotuberculosis%2C and Escherichia coli pesticin plasmid insertion sequence transposase Y1055 TR:P74993 (EMBL:U59875) (340 aa) fasta scores: E(): 0%2C 100.0%25 id in 340 aa gene gene2774 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2808 YPO2809 YPO2809 ypmt1.57c ypmt1.57c 3141535 3142317 + insertion sequence IS100%2C ATP-binding protein Similar to Escherichia coli insertion sequence IS21 putative ATP-binding protein%2C IstB SW:ISTB_ECOLI (P15026) (265 aa) fasta scores: E(): 0%2C 47.4%25 id in 249 aa. Also almost identical to Yersinia pestis and Escherichia coli putative IS100 transposase ypmt1.57c TR:Q9R3L5 (EMBL:AL117211) (260 aa) fasta scores: E(): 0%2C 99.6%25 id in 260 aa. gene gene2775 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2809 YPO2811 YPO2811 YPO2811 3142684 3142989 - putative membrane protein No significant database matches gene gene2776 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2811 YPO2812 YPO2812 YPO2812 3143086 3143457 - putative membrane protein Doubtful CDS%2C no significant database matches gene gene2777 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2812 YPO2813 YPO2813 ynbD ynbD 3143469 3144788 - putative dual specificity phosphatase Similar to Escherichia coli hypothetical protein YnbD SW:YNBD_ECOLI (P76093) (430 aa) fasta scores: E(): 0%2C49.6%25 id in 415 aa%2C and to Pseudomonas aeruginosa hypothetical protein PA2539 TR:AAG05927 (EMBL:AE004681) (437 aa) fasta scores: E(): 0%2C 44.0%25 id in 432 aa gene gene2778 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2813 YPO2814 YPO2814 YPO2814 3144781 3146544 - conserved hypothetical protein N-terminal region similar to Mus musculus monoglyceride lipase MglL TR:O35678 (EMBL:AJ001118) (303 aa) fasta scores: E(): 7e-07%2C 26.5%25 id in 253 aa%2C and to Escherichia coli hypothetical protein YnbC SW:YNBC_ECOLI (P76092) (585 aa) fasta scores: E(): 0%2C 65.4%25 id in 581 aa gene gene2779 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2814 YPO2815 YPO2815 YPO2815 3146541 3147173 - putative acyltransferase Internal region of the CDS is similar to an internal region of Brassica napus lysophosphatidic acid acyltransferase ACT2 TR:Q9LLY4 (EMBL:AF111161) (344 aa) fasta scores: E(): 1.1e-08%2C 29.2%25 id in 144 aa. Full length CDS is similar to Vibrio cholerae hypothetical protein VC1937 TR:Q9KQR1 (EMBL:AE004269) (223 aa) fasta scores: E(): 0%2C 47.9%25 id in 211 aa gene gene2780 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2815 YPO2816 YPO2816 ynbB ynbB 3147183 3148112 - putative phosphatidate cytidylyltransferase Similar to Escherichia coli phosphatidate cytidylyltransferase CdsA SW:CDSA_ECOLI (P06466) (249 aa) fasta scores: E(): 1.5e-14%2C 30.2%25 id in 245 aa%2C and to Escherichia coli hypothetical protein YnbB SW:YNBB_ECOLI (P76091) (298 aa) fasta scores: E(): 0%2C 57.1%25 id in 296 aa gene gene2781 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2816 YPO2817 YPO2817 YPO2817 3148105 3148707 - putative CDP-alcohol phosphatidyltransferase Similar to Escherichia coli CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase PgsA SW:PGSA_ECOLI (P06978) (181 aa) fasta scores: E(): 0.00091%2C 23.4%25 id in 175 aa%2C and to Escherichia coli hypothetical protein TR:P76090 (EMBL:AE000238) (203 aa) fasta scores: E(): 0%2C 55.9%25 id in 195 aa gene gene2782 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2817 YPO2818 YPO2818 YPO2818 3148934 3149167 - hypothetical protein doubtful CDS with no significant database hits gene gene2783 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2818 YPO2819 YPO2819 int int 3149504 3149803 + phage integrase (partial) Similar to Bacteriophage P22 integrase Int SW:VINT_BPP22 (P04890) (387 aa) fasta scores: E(): 1.6e-29%2C73.3%25 id in 90 aa%2C and to Bacteriophage SfII integrase Int TR:O21941 (EMBL:AF021347) (205 aa) fasta scores: E(): 2.9e-28%2C 67.8%25 id in 90 aa%3B~was marked partial gene gene2784 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2819 YPO2820 YPO2820 YPO2820 3149886 3150224 + hypothetical protein no significant database hits gene gene2785 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2820 YPO2821 YPO2821 YPO2821 3150510 3150857 + hypothetical protein no significant database hits gene gene2786 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2821 YPO2822 YPO2822 YPO2822 3150971 3151171 + hypothetical protein no significant database hits gene gene2787 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2822 YPO2823 YPO2823 YPO2823 3151430 3151612 + putative regulatory protein Similar to Escherichia coli prophage CP4-57 regulatory protein AlpA SW:ALPA_ECOLI (P33997) (70 aa) fasta scores: E(): 0.17%2C 29.7%25 id in 64 aa%2C and to Vibrio cholerae hypothetical transcriptional regulator VC0497 TR:Q9KUL8 (EMBL:AE004136) (66 aa) fasta scores: E(): 0.0096%2C 29.1%25 id in 55 aa gene gene2788 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2823 YPO2824 YPO2824 ads ads 3151967 3152833 + putative FolD bifunctional protein Similar to Escherichia coli methylenetetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclohydrolase bifunctional protein FolD SW:FOLD_ECOLI (P24186) (287 aa) fasta scores: E(): 0%2C 86.6%25 id in 283 aa%2C and to Salmonella typhi methylenetetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclohydrolase bifunctional protein FolD SW:FOLD_SALTI (Q60006) (287 aa) fasta scores: E(): 0%2C 86.2%25 id in 283 aa gene gene2789 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2824 YPO2825 YPO2825 YPO2825 3152848 3153060 + conserved hypothetical protein Similar to Escherichia coli hypothetical protein YbcJ SW:YBCJ_ECOLI (P45571) (70 aa) fasta scores: E(): 5.9e-18%2C 71.4%25 id in 70 aa%2C and to Neisseria meningitidis hypothetical protein NMA0633 TR:Q9JVX7 (EMBL:AL162753) (77 aa) fasta scores: E(): 1.1e-08%2C 46.9%25 id in 64 aa gene gene2790 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2825 YPO2826 YPO2826 tnp tnp 3153207 3153665 - transposase for the IS1541 insertion element Similar to Salmonella typhimurium%2C and Salmonella typhi transposase for insertion sequence IS200 TnpA SW:T200_SALTY (Q57334) (152 aa) fasta scores: E(): 0%2C 94.1%25 id in 152 aa. Identical to the Yersinia pseudotuberculosis IS1541-like element transposase Tnp TR:Q9X9F5 (EMBL:AJ238014) (152 aa) fasta scores: E(): 0%2C 100.0%25 id in 152 aa gene gene2791 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2826 YPO2827 YPO2827 upp upp 3153841 3154467 - uracil phosphoribosyltransferase Similar to Escherichia coli uracil phosphoribosyltransferase Upp SW:UPP_ECOLI (P25532) (208 aa) fasta scores: E(): 0%2C 93.3%25 id in 208 aa%2C and to Vibrio cholerae uracil phosphoribosyltransferase VC2225 TR:Q9KPY7 (EMBL:AE004294) (208 aa) fasta scores: E(): 0%2C 83.2%25 id in 208 aa gene gene2792 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2827 YPO2828 YPO2828 purI purI 3154864 3155907 + putative phosphoribosylaminoimidazole synthetase Similar to Salmonella typhimurium probable 5'-phosphoribosyl-5-aminoimidazole synthetase PurI TR:P74883 (EMBL:U68765) (345 aa) fasta scores: E(): 0%2C83.5%25 id in 345 aa%2C and to Escherichia coli probable phosphoribosylaminoimidazole synthetase PurM TR:AAG14577 (EMBL:AF293164) (350 aa) fasta scores: E(): 0%2C 82.6%25 id in 345 aa gene gene2793 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2828 YPO2829 YPO2829 purN purN 3156022 3156660 + putative phosphoribosylglycinamide formyltransferase Similar to Escherichia coli phosphoribosylglycinamide formyltransferase PurN SW:PUR3_ECOLI (P08179) (212 aa) fasta scores: E(): 0%2C 72.2%25 id in 209 aa gene gene2794 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2829 YPO2830 YPO2830 speG speG 3156889 3157434 + spermidine acetyltransferase Similar to Escherichia coli spermidine N1-acetyltransferase SpeG SW:ATDA_ECOLI (P37354) (185 aa) fasta scores: E(): 0%2C 80.5%25 id in 174 aa%2C and to Vibrio cholerae spermidine N1-acetyltransferase VCA0947 TR:Q9KL03 (EMBL:AE004421) (173 aa) fasta scores: E(): 0%2C 59.2%25 id in 169 aa gene gene2795 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2830 YPO2831 YPO2831 fliB fliB 3157531 3158717 - putative flagellar associated lysine-N-methylase (pseudogene) Similar to Salmonella typhimurium flagellar associated lysine-N-methylase FliB SW:FLIB_SALTY (Q56106) (401 aa) fasta scores: E(): 0%2C 30.0%25 id in 400 aa%2C and to Salmonella cholerae-suis flagellar protein FliU TR:Q9KJV4 (EMBL:AF159460) (401 aa) fasta scores: E(): 0%2C 30.3%25 id in 400 aa. Contains a frameshift after codon 116. Frame shift occurs at a poly A hexamer. The sequence has been checked and is believed to be correct pseudogene gene2796 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2831 YPO2833 YPO2833 pstb pstb 3158945 3159757 - putative phosphate transport ATP-binding protein Similar to Pseudomonas aeruginosa phosphate transport ATP-binding protein PstB TR:Q51546 (EMBL:D45195) (277 aa) fasta scores: E(): 0%2C 71.7%25 id in 254 aa%2C and to Vibrio cholerae phosphate ABC transporter%2C ATP-binding protein VC0726 TR:Q9KU04 (EMBL:AE004159) (273 aa) fasta scores: E(): 0%2C 72.1%25 id in 262 aa. Similar to YPO4114 (58.8%25 identity in 250 aa overlap) gene gene2797 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2833 YPO2834 YPO2834 pstA pstA 3159785 3161497 - putative phosphate transport system permease Similar to Pseudomonas aeruginosa phosphate transport system permease protein PstA pstA TR:Q51545 (EMBL:D45195) (513 aa) fasta scores: E(): 0%2C 50.7%25 id in 503 aa%2C and to Vibrio cholerae phosphate ABC transporter%2Cpermease protein VC0725 TR:Q9KU05 (EMBL:AE004159) (548 aa) fasta scores: E(): 0%2C 52.9%25 id in 554 aa. Possible alternative translational start sites gene gene2798 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2834 YPO2835 YPO2835 pstC pstC 3161497 3163746 - putative phosphate transport system permease Similar to Pseudomonas aeruginosa phosphate transport system permease protein PstC pstc or pa5368 TR:Q51544 (EMBL:D45195) (677 aa) fasta scores: E(): 0%2C42.8%25 id in 694 aa%2C and to Vibrio cholerae phosphate ABC transporter%2C permease protein VC0724 TR:Q9KU06 (EMBL:AE004159) (731 aa) fasta scores: E(): 0%2C 40.9%25 id in 743 aa. Possible alternative translational start sites gene gene2799 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2835 YPO2836 YPO2836 ppk ppk 3163999 3166062 + polyphosphate kinase Similar to Escherichia coli polyphosphate kinase Ppk SW:PPK_ECOLI (P28688) (687 aa) fasta scores: E(): 0%2C 86.9%25 id in 687 aa%2C and to Klebsiella aerogenes polyphosphate kinase Ppk SW:PPK_KLEAE (Q07411) (684 aa) fasta scores: E(): 0%2C 84.4%25 id in 685 aa gene gene2800 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2836 YPO2837 YPO2837 ppx ppx 3166073 3167632 + putative exopolyphosphatase Similar to Escherichia coli exopolyphosphatase Ppx SW:PPX_ECOLI (P29014) (512 aa) fasta scores: E(): 0%2C 77.2%25 id in 509 aa%2C and to Salmonella typhimurium exopolyphosphatase Ppx TR:O86091 (EMBL:AF085682) (513 aa) fasta scores: E(): 0%2C 77.4%25 id in 513 aa. Similar to the N-terminus of YPO3870 (58.0%25 identity in 81 aa overlap) gene gene2801 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2837 YPO2838 YPO2838 yfgG yfgG 3167744 3167956 + putative exported protein Similar to Escherichia coli hypothetical protein YfgG SW:YFGG_ECOLI (P76571) (63 aa) fasta scores: E(): 3e-05%2C 42.9%25 id in 49 aa gene gene2802 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2838 YPO2839 YPO2839 mgtE mgtE 3168008 3169483 + putative divalent cation transport protein N-terminus of the CDS is similar to Bacillus firmus magnesium transport protein MgtE TR:Q45121 (EMBL:U18744) (312 aa) fasta scores: E(): 7.7e-27%2C 29.9%25 id in 311 aa. Full length CDS is similar to Pseudomonas aeruginosa probable magnesium transporter MgtE TR:AAG04302 (EMBL:AE004525) (482 aa) fasta scores: E(): 0%2C 54.6%25 id in 480 aa gene gene2803 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2839 YPO2840 YPO2840 YPO2840 3169623 3170975 + putative heat shock protein Similarity to an internal region of Methanosarcina thermophila heat shock protein 70 Hsp70 TR:Q9UXR0 (EMBL:Y17862) (610 aa) fasta scores: E(): 1.6e-06%2C 25.3%25 id in 359 aa. Full length CDS is similar to Escherichia coli hypothetical protein YegD SW:YEGD_ECOLI (P36928) (450 aa) fasta scores: E(): 0%2C 71.8%25 id in 450 aa gene gene2804 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2840 YPO2841 YPO2841 YPO2841 3171247 3172095 - putative ABC transporter permease Similar to Agrobacterium tumefaciens mannopine permease MotD TR:Q44381 (EMBL:AF242881) (273 aa) fasta scores: E(): 0%2C 41.5%25 id in 258 aa%2C and to Pseudomonas aeruginosa probable ABC transporter permease PA0606 TR:AAG03995 (EMBL:AE004497) (276 aa) fasta scores: E(): 0%2C65.4%25 id in 260 aa gene gene2805 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2841 YPO2842 YPO2842 YPO2842 3172157 3173422 - putative ABC transporter permease Similarity to the N-terminus of Agrobacterium tumefaciens mannopine permease MotC TR:Q44382 (EMBL:AF242881) (294 aa) fasta scores: E(): 2.7e-29%2C 41.3%25 id in 213 aa%2C and to the full length Pseudomonas aeruginosa probable ABC transporter permease PA0605 TR:AAG03994 (EMBL:AE004497) (415 aa) fasta scores: E(): 0%2C 54.7%25 id in 397 aa gene gene2806 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2842 YPO2843 YPO2843 YPO2843 3173469 3174497 - putative transport system periplasmic protein Similar to Agrobacterium radiobacter agropine permease protein AgtB TR:Q9R701 (EMBL:AF242881) (364 aa) fasta scores: E(): 9.9e-26%2C 30.3%25 id in 320 aa%2C and to Pseudomonas aeruginosa hypothetical protein PA0222 TR:AAG03611 (EMBL:AE004460) (352 aa) fasta scores: E(): 0%2C56.1%25 id in 342 aa gene gene2807 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2843 YPO2844 YPO2844 gabT gabT 3174550 3175839 - putative aminobutyrate aminotransferase Similar to Escherichia coli 4-aminobutyrate aminotransferase GoaG SW:GOAG_ECOLI (P50457) (421 aa) fasta scores: E(): 0%2C 65.7%25 id in 428 aa%2C and to Pseudomonas aeruginosa 4-aminobutyrate aminotransferase GabT TR:AAG03655 (EMBL:AE004465) (426 aa) fasta scores: E(): 0%2C53.0%25 id in 423 aa gene gene2808 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2844 YPO2845 YPO2845 YPO2845 3176021 3177526 + putative GntR-family regulatory protein Similar to Rhizobium meliloti probable rhizopine catabolism regulatory protein MocR SW:MOCR_RHIME (P49309) (493 aa) fasta scores: E(): 0%2C 39.1%25 id in 460 aa%2C and to Rhizobium leguminosarum putative regulatory protein MocR TR:O85775 (EMBL:AF076240) (488 aa) fasta scores: E(): 0%2C41.0%25 id in 466 aa gene gene2809 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2845 YPO2846 YPO2846 YPO2846 3177909 3178994 + putitive ABC-transporter ATP-binding protein Similar to Agrobacterium radiobacter agropine permease AgtA TR:Q9R702 (EMBL:AF242881) (359 aa) fasta scores: E(): 0%2C 42.5%25 id in 351 aa%2C and to Streptomyces coelicolor putative polyamine ABC-transporter ATP-binding protein SC8B7.10C TR:O86831 (EMBL:AL031225) (397 aa) fasta scores: E(): 0%2C 41.2%25 id in 362 aa gene gene2810 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2846 YPO2847 YPO2847 yegM yegM 3179358 3180692 + putitive HlyD family secretion protein Similar to Escherichia coli acriflavin resistance protein E AcrE SW:ACRE_ECOLI (P24180) (385 aa) fasta scores: E(): 1.2e-26%2C 31.3%25 id in 361 aa%2C and to Escherichia coli hypothetical protein YegM SW:YEGM_ECOLI (P76397) (415 aa) fasta scores: E(): 0%2C 64.5%25 id in 409 aa gene gene2811 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2847 YPO2848 YPO2848 yegN yegN 3180692 3183850 + AcrB/AcrD/AcrF family membrane protein Similar to Pseudomonas aeruginosa multidrug efflux transporter AmrB TR:AAG05406 (EMBL:AF147719) (1045 aa) fasta scores: E(): 0%2C 29.8%25 id in 1053 aa%2C and to Escherichia coli hypothetical protein YegN SW:YEGN_ECOLI (P76398) (1040 aa) fasta scores: E(): 0%2C 81.4%25 id in 1039 aa. Similar to YPO2849 (50.5%25 identity in 1018 aa overlap) gene gene2812 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2848 YPO2849 YPO2849 yegO yegO 3183847 3186921 + AcrB/AcrD/AcrF family membrane protein Similar to Escherichia coli hypothetical protein YegO SW:YEGO_ECOLI (P76399) (1025 aa) fasta scores: E(): 0%2C80.1%25 id in 1019 aa%2C and to Pseudomonas aeruginosa probable RND efflux transporter PA2526 TR:AAG05914 (EMBL:AE004680) (1036 aa) fasta scores: E(): 0%2C 61.7%25 id in 1019 aa. Similar to YPO2848 (50.6%25 identity in 1018 aa overlap) gene gene2813 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2849 YPO2850 YPO2850 yegB yegB 3186955 3188352 + putative membrane protein Similar to the N-terminal region of Escherichia coli multidrug resistance protein B emrB SW:EMRB_ECOLI (P27304) (512 aa) fasta scores: E(): 9.9e-30%2C 31.1%25 id in 399 aa%2Cand to Escherichia coli hypothetical protein YegB SW:YEGB_ECOLI (P36554) (471 aa) fasta scores: E(): 0%2C 71.8%25 id in 465 aa gene gene2814 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2850 YPO2851 YPO2851 baeS baeS 3188383 3189764 + two-component system%2C sensor kinase (pseudogene) Similar to Escherichia coli two-component system%2Csensor protein BaeS SW:BAES_ECOLI (P30847) (467 aa) fasta scores: E(): 0%2C 65.6%25 id in 456 aa%2C and to Stenotrophomonas maltophilia putative two component signal transduction system SmeS TR:Q9RBZ0 (EMBL:AF173226) (467 aa) fasta scores: E(): 0%2C 39.8%25 id in 457 aa. Contains a frameshift after codon 370. The frameshift occurs within a homopolymeric tract of 7G. The sequence has been checked and is believed to be correct pseudogene gene2815 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2851 YPO2853 YPO2853 baeR baeR 3189777 3190496 + two-component system response regulator Similar to Escherichia coli two-component system%2Ctranscriptional regulatory protein BaeR SW:BAER_ECOLI (P30846) (240 aa) fasta scores: E(): 0%2C 73.9%25 id in 241 aa%2Cand to Stenotrophomonas maltophilia putative two component signal transduction system protein SmeR TR:Q9RBZ1 (EMBL:AF173226) (229 aa) fasta scores: E(): 0%2C 53.0%25 id in 234 aa gene gene2816 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2853 YPO2854 YPO2854 YPO2854 3190633 3190971 + conserved hypothetical protein Similar to Escherichia coli hypothetical protein YegP SW:YEGP_ECOLI (P76402) (110 aa) fasta scores: E(): 3.4e-19%2C 53.7%25 id in 108 aa%2C and to Pseudomonas aeruginosa hypothetical protein PA0329 TR:AAG03718 (EMBL:AE004471) (110 aa) fasta scores: E(): 6.7e-15%2C 49.5%25 id in 95 aa gene gene2817 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2854 YPO2855 YPO2855 YPO2855 3191246 3192640 + putative protease Similar to Proteus mirabilis putative protease TR:Q9ZA85 (EMBL:AF088981) (334 aa) fasta scores: E(): 5.3e-19%2C 28.5%25 id in 316 aa%2C and to Escherichia coli putative protease YegQ SW:YEGQ_ECOLI (P76403) (453 aa) fasta scores: E(): 0%2C 83.4%25 id in 452 aa gene gene2818 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2855 YPO2856 YPO2856 YPO2856 3193276 3194166 + putative diacylglycerol kinase Similar to Escherichia coli hypothetical protein YegS SW:YEGS_ECOLI (P76407) (299 aa) fasta scores: E(): 0%2C68.0%25 id in 294 aa%2C and to Pseudomonas aeruginosa hypothetical protein PA3023 TR:AAG06411 (EMBL:AE004727) (302 aa) fasta scores: E(): 0%2C 46.8%25 id in 293 aa gene gene2819 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2856 YPO2857 YPO2857 YPO2857 3194433 3194897 - putative exported protein Poor database matches. Similar to Escherichia coli hypothetical protein YkfE TR:BAA77890 (EMBL:D83536) (157 aa) fasta scores: E(): 9.2e-08%2C 31.6%25 id in 152 aa gene gene2820 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2857 YPO2858 YPO2858 YPO2858 3195291 3196061 + hypothetical protein no significant database hits to the full length CDS. Weakly similar to the N-terminal region of Arabidopsis thaliana beta-galactosidase protein BGAL14 TR:Q9SCU8 (EMBL:AJ270310) (887 aa) fasta scores: E(): 9.9%2C 22.6%25 id in 226 aa gene gene2821 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2858 YPO2859 YPO2859 thiD thiD 3196123 3196923 - putative phosphomethylpyrimidine kinase Similar to Escherichia coli phosphomethylpyrimidine kinase ThiD SW:THID_ECOLI (P76422) (266 aa) fasta scores: E(): 0%2C 77.1%25 id in 266 aa%2C and to Salmonella typhimurium phosphomethylpyrimidine kinase ThiD SW:THID_SALTY (P55882) (266 aa) fasta scores: E(): 0%2C 75.9%25 id in 266 aa gene gene2822 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2859 YPO2860 YPO2860 YPO2860 3197433 3197912 + putative membrane protein No significant database matches. CDS DNA has a low GC content%2C 32.91%25. Similar to YPO3895 (56.6%25 identity in 159 aa overlap)%2C YPO3935 (55.7%25 identity in 158 aa overlap)%2C YPO3894 (53.8%25 identity in 160 aa overlap). C-terminal region of the CDS is similar to YPO3893 (55.7%25 identity in 122 aa overlap) gene gene2823 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2860 YPO2861 YPO2861 YPO2861 3197971 3198225 + hypothetical protein (pseudogene) No significant database matches. CDS translational stop codon lies within a downstream IS285 element. Therefore CDS is probably disrupted by the insertion (at the C-terminal end) of the IS285 element. It is not clear whether this insertion affects the function of the protein. Similar to N-terminal region of YPO4106 (56.5%25 identity in 85 aa overlap) pseudogene gene2824 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2861 YPO2862 YPO2862 y1062 y1062 3198261 3199469 - transposase for the IS285 insertion element Previously sequenced Yersinia pestis transposase Y1062 or Ypmt1.80C TR:O68779 (EMBL:AF053947) (402 aa) fasta scores: E(): 0%2C 100.0%25 id in 402 aa. gene gene2825 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2862 YPO2863 YPO2863 YPO2863 3199551 3200195 + putative membrane protein C-terminal region of the protein is similar to Escherichia coli hypothetical protein YafU SW:YAFU_ECOLI (P77354) (112 aa) fasta scores: E(): 0.0029%2C 30.8%25 id in 104 aa. Internal region of the protein is similar to the N-terminus of Methanobacterium thermoautotrophicum putative membrane protein MTH1092 TR:O27164 (EMBL:AE000880) (257 aa) fasta scores: E(): 2.7%2C 25.0%25 id in 176 aa. N-terminal region of the CDS is similar to the C-terminus of YPO4106 (60.0%25 identity in 100 aa overlap). C-terminal region of the CDS is similar to YPO4105 (57.0%25 identity in 86 aa overlap) gene gene2826 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2863 YPO2864 YPO2864 YPO2864 3200192 3200587 + putative membrane protein No significant database matches. CDS DNA has a low GC content%2C 27.02%25. Similar to YPO2866 (65.6%25 identity in 131 aa overlap)%2C YPO2867 (62.9%25 identity in 132 aa overlap) and YPO2865 (61.8%25 identity in 131 aa overlap) gene gene2827 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2864 YPO2865 YPO2865 YPO2865 3200651 3201046 + putative membrane protein No significant database matches to the full length CDS. Similar to Borrelia burgdorferi conserved hypothetical integral membrane protein BB0717 TR:O51659 (EMBL:AE001171) (160 aa) fasta scores: E(): 3.1%2C 27.6%25 id in 116 aa. CDS DNA has a low GC content%2C 26.01%25. Similar to YPO2867 (67.4%25 identity in 132 aa overlap)%2C YPO2866 (68.7%25 identity in 131 aa overlap) and YPO2864 (61.8%25 identity in 131 aa overlap) gene gene2828 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2865 YPO2866 YPO2866 YPO2866 3201084 3201503 + putative membrane protein No significant database matches to the full length CDS. Similar to the C-terminal regions of Borrelia burgdorferi hypothetical protein BB0353 TR:O51328 (EMBL:AE001141) (599 aa) fasta scores: E(): 0.63%2C 28.8%25 id in 118 aa. CDS DNA has a low GC content%2C 30.95%25.. Similar to YPO2865 (68.7%25 identity in 131 aa overlap)%2C YPO2864 (65.6%25 identity in 131 aa overlap) and YPO2867 (59.8%25 identity in 132 aa overlap) gene gene2829 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2866 YPO2867 YPO2867 YPO2867 3201567 3201965 + putative membrane protein No significant database matches to the full length CDS. Similar to the C-terminal region of Saccharomyces cerevisiae dolichyl-diphosphooligosaccharide--protein glycosyltransferase protein OST6 SW:OSTY_YEAST (Q03723) (332 aa) fasta scores: E(): 2.8%2C 29.2%25 id in 120 aa. CDS DNA has a low GC content%2C 26.31%25. Similar to YPO2865 (67.4%25 identity in 132 aa overlap)%2C YPO2864 (62.9%25 identity in 132 aa overlap) and YPO2866 (59.8%25 identity in 132 aa overlap) gene gene2830 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2867 YPO2868 YPO2868 YPO2868 3201989 3202468 + conserved hypothetical protein Similar to the N-terminal region of Escherichia coli hypothetical protein YhhZ SW:YHHZ_ECOLI (P46855) (392 aa) fasta scores: E(): 3.3e-16%2C 40.9%25 id in 149 aa. Full length CDS is similar to Pseudomonas aeruginosa secreted protein HcpB TR:AAG03652 (EMBL:AE004939) (172 aa) fasta scores: E(): 5.8e-06%2C 38.9%25 id in 167 aa. CDS DNA has a low G+C content%2C 36.04%25. Similar to YPO2962 (59.1%25 identity in 159 aa overlap) and the N-terminal region of YPO2793 (59.1%25 identity in 159 aa overlap). N-terminal region of CDS is similar to YPO1872 (50.5%25 identity in 109 aa overlap) gene gene2831 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2868 YPO2869 YPO2869 tnp tnp 3202628 3203086 - transposase for the IS1541 insertion element Similar to Salmonella typhimurium%2C and Salmonella typhi transposase for insertion sequence IS200 TnpA SW:T200_SALTY (Q57334) (152 aa) fasta scores: E(): 0%2C 94.1%25 id in 152 aa. Identical to the Yersinia pseudotuberculosis IS1541-like element transposase Tnp TR:Q9X9F5 (EMBL:AJ238014) (152 aa) fasta scores: E(): 0%2C 100.0%25 id in 152 aa gene gene2832 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2869 YPO2870 YPO2870 guaA guaA 3203461 3205038 - putative GMP synthase Similar to Escherichia coli glutamine-hydrolyzing%2CGMP synthase GuaA SW:GUAA_ECOLI (P04079) (525 aa) fasta scores: E(): 0%2C 87.6%25 id in 525 aa%2C and to Vibrio cholerae GMP synthase VC0768 TR:Q9KTW2 (EMBL:AE004162) (517 aa) fasta scores: E(): 0%2C 81.5%25 id in 525 aa gene gene2833 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2870 YPO2871 YPO2871 guaB guaB 3205218 3206681 - inosine-5'-monophosphate dehydrogenase Similar to Escherichia coli inosine-5'-monophosphate dehydrogenase GuaB SW:IMDH_ECOLI (P06981) (488 aa) fasta scores: E(): 0%2C 92.2%25 id in 486 aa%2C and to Haemophilus influenzae inosine-5'-monophosphate dehydrogenase GuaB SW:IMDH_HAEIN (P44334) (488 aa) fasta scores: E(): 0%2C 82.5%25 id in 485 aa gene gene2834 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2871 YPO2872 YPO2872 xseA xseA 3206851 3208230 + exodeoxyribonuclease VII large subunit Similar to Escherichia coli exodeoxyribonuclease VII large subunit XseA SW:EX7L_ECOLI (P04994) (456 aa) fasta scores: E(): 0%2C 71.8%25 id in 454 aa%2C and to Vibrio cholerae exodeoxyribonuclease VII large subunit VC0766 TR:Q9KTW4 (EMBL:AE004162) (446 aa) fasta scores: E(): 0%2C 59.1%25 id in 443 aa gene gene2835 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2872 YPO2873 YPO2873 YPO2873 3208363 3208587 - conserved hypothetical protein Similar to Vibrio cholerae hypothetical protein VC0765 TR:Q9KTW5 (EMBL:AE004162) (77 aa) fasta scores: E(): 5e-09%2C 36.5%25 id in 74 aa%2C and to C-terminal region of Escherichia coli hypothetical protein YfgJ SW:YFGJ_ECOLI (P76575) (83 aa) fasta scores: E(): 4.8e-16%2C 64.1%25 id in 64 aa gene gene2836 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2873 YPO2874 YPO2874 YPO2874 3208636 3209592 - putative membrane protein Similar to Vibrio cholerae hypothetical protein VCA0024 TR:Q9KNE1 (EMBL:AE004346) (330 aa) fasta scores: E(): 0%2C 44.4%25 id in 313 aa%2C and to Pseudomonas aeruginosa hypothetical protein PA5466 TR:AAG08851 (EMBL:AE004959) (314 aa) fasta scores: E(): 3.7e-16%2C 32.3%25 id in 303 aa gene gene2837 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2874 YPO2875 YPO2875 engA engA 3209939 3211426 - putative GTP-binding protein Similar to Escherichia coli probable GTP-binding protein EngA SW:ENGA_ECOLI (P77254) (490 aa) fasta scores: E(): 0%2C 81.4%25 id in 495 aa%2C and to Vibrio cholerae GTP-binding protein VC0763 TR:Q9KTW7 (EMBL:AE004161) (494 aa) fasta scores: E(): 0%2C 71.3%25 id in 499 aa gene gene2838 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2875 YPO2876 YPO2876 yfgL yfgL 3211574 3212755 - putative lipoprotein Similar to Escherichia coli hypothetical protein YfgL SW:YFGL_ECOLI (P77774) (392 aa) fasta scores: E(): 0%2C76.3%25 id in 393 aa%2C and to Salmonella typhimurium hypothetical protein TR:AAG31169 (EMBL:AF314961) (392 aa) fasta scores: E(): 0%2C 76.3%25 id in 393 aa gene gene2839 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2876 YPO2877 YPO2877 yfgM yfgM 3212767 3213402 - putative membrane protein Similar to Escherichia coli hypothetical protein YfgM SW:YFGM_ECOLI (P76576) (206 aa) fasta scores: E(): 0%2C56.7%25 id in 210 aa%2C and to Vibrio cholerae hypothetical protein VC0761 vc0761 TR:Q9KTW9 (EMBL:AE004161) (204 aa) fasta scores: E(): 4e-22%2C 39.6%25 id in 212 aa gene gene2840 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2877 YPO2878 YPO2878 hisS hisS 3213416 3214690 - histidyl-tRNA synthetase Similar to Escherichia coli histidyl-tRNA synthetase HisS SW:SYH_ECOLI (P04804) (423 aa) fasta scores: E(): 0%2C82.0%25 id in 423 aa%2C and to Salmonella typhimurium histidyl-tRNA synthetase HisS SW:SYH_SALTY (O52765) (423 aa) fasta scores: E(): 0%2C 82.0%25 id in 423 aa gene gene2841 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2878 YPO2879 YPO2879 aarC aarC 3214899 3216026 - putative acetyltransferase Similar to Providencia stuartii essential protein%2Cinvolved in the density-dependent regulator of the 2'-N-acetyltransferase%2C AarC SW:GCPE_PROST (P72241) (365 aa) fasta scores: E(): 0%2C 88.1%25 id in 361 aa%2C and to Escherichia coli essential hypotheical protein%2C GcpE SW:GCPE_ECOLI (P27433) (372 aa) fasta scores: E(): 0%2C 86.8%25 id in 372 aa gene gene2842 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2879 YPO2880 YPO2880 yfgA yfgA 3216088 3217125 - putative DNA-binding protein Similar to Escherichia coli hypothetical protein YfgA SW:YFGA_ECOLI (P27434) (337 aa) fasta scores: E(): 0%2C57.5%25 id in 348 aa%2C and to Vibrio cholerae hypothetical protein VC0758 vc0758 TR:Q9KTX2 (EMBL:AE004161) (393 aa) fasta scores: E(): 1.2e-28%2C 36.5%25 id in 370 aa gene gene2843 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2880 YPO2881 YPO2881 YPO2881 3217115 3217864 - putative fimbrial biogenesis protein Similar to Pseudomonas aeruginosa type 4 fimbrial biogenesis protein PilF TR:AAG07192 (EMBL:AE004798) (252 aa) fasta scores: E(): 2.8e-15%2C 29.8%25 id in 245 aa%2C and to Vibrio cholerae putative fimbrial biogenesis and twitching motility protein VC1612 TR:Q9KRM4 (EMBL:AE004238) (237 aa) fasta scores: E(): 7.1e-23%2C 38.4%25 id in 219 aa gene gene2844 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2881 YPO2882 YPO2882 YPO2882 3218018 3219214 - conserved hypothetical protein Similar to Escherichia coli hypothetical protein YfgB SW:YFGB_ECOLI (P36979) (384 aa) fasta scores: E(): 0%2C86.2%25 id in 378 aa%2C and to Haemophilus influenzae hypothetical protein HI0365 SW:YFGB_HAEIN (P44665) (390 aa) fasta scores: E(): 0%2C 75.9%25 id in 378 aa. Possible alternative translational start sites gene gene2845 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2882 YPO2883 YPO2883 ndk ndk 3219476 3219904 - nucleoside diphosphate kinase Similar to Escherichia coli nucleoside diphosphate kinase Ndk SW:NDK_ECOLI (P24233) (142 aa) fasta scores: E(): 0%2C 77.3%25 id in 141 aa%2C and to Vibrio cholerae nucleoside diphosphate kinase VC0756 TR:Q9KTX4 (EMBL:AE004161) (142 aa) fasta scores: E(): 0%2C 67.4%25 id in 141 aa gene gene2846 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2883 YPO2884 YPO2884 YPO2884 3220231 3222651 - putative exported protein No significant database matches gene gene2847 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2884 YPO2885 YPO2885 YPO2885 3222826 3223083 + hypothetical protein no significant database hits gene gene2848 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2885 YPO2886 YPO2886 yapA yapA 3223437 3227729 + putative autotransporter protein Previously sequenced as Yersinia pestis putative autotransporter protein YapA TR:CAC14220 (EMBL:AJ277624) (1432 aa) fasta scores: E(): 0%2C 100.0%25 id in 1430 aa. C-terminal region similar to Escherichia coli glycoprotein autotransporter TibA TR:Q9XD84 (EMBL:AF109215) (989 aa) fasta scores: E(): 0%2C 27.6%25 id in 954 aa. Contains coiled-coiled domains%2C residues 330 to 369 and 399 to 480. gene gene2849 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2886 YPO2887 YPO2887 yapB yapB 3228287 3231796 + putative autotransporter protein (pseudogene) Previously sequenced as Yersinia pestis putative autotransporter protein YapB TR:CAC14221 (EMBL:AJ277625) (1052 aa) fasta scores: E(): 0%2C 99.8%25 id in 1049 aa. C-terminus Similar to Escherichia coli glycoprotein autotransporter TibA TR:Q9XD84 (EMBL:AF109215) (989 aa) fasta scores: E(): 4.3e-29%2C 28.7%25 id in 835 aa. Contains coiled-coiled domains%2C residues 350 to 404. Probable pseudogene%2C C-terminus is highly similar to%2C but truncated in comparison to%2C the YPO2886 C-terminal region. Contains a frameshift after codon 1048. Effect on function not known. The sequence has been checked and is believed to be correct pseudogene gene2850 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2887 YPO2888 YPO2888 YPO2888 3232069 3233022 - hypothetical protein no significant database hits%2C C-terminal region similar to Escherichia coli protein that enhances serine-dependent growth inhibition%2C SseB SW:SSEB_ECOLI (P31143) (261 aa) fasta scores: E(): 5.4e-26%2C 42.9%25 id in 268 aa. N-terminus contains a small amino acid repeat%2Cresidues 9 to 28%2C DD x4 gene gene2851 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2888 YPO2889 YPO2889 pepB pepB 3233101 3234399 - peptidase B Similar to Salmonella typhimurium acidic amino acid-specific leucyl aminopeptidase%2C peptidase B PepB TR:Q9RF52 (EMBL:AF201078) (427 aa) fasta scores: E(): 0%2C76.8%25 id in 426 aa%2C and to Escherichia coli peptidase B PepB SW:PEPB_ECOLI (P37095) (427 aa) fasta scores: E(): 0%2C75.8%25 id in 426 aa gene gene2852 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2889 YPO2890 YPO2890 YPO2890 3234539 3234739 - conserved hypothetical protein Similar to Escherichia coli hypothetical protein YfhJ SW:YFHJ_ECOLI (P37096) (66 aa) fasta scores: E(): 9.4e-23%2C 77.3%25 id in 66 aa%2C and to Haemophilus influenzae hypothetical protein HI0371 SW:YFHJ_HAEIN (P44668) (64 aa) fasta scores: E(): 4.9e-20%2C 70.3%25 id in 64 aa gene gene2853 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2890 YPO2891 YPO2891 fdx fdx 3234769 3235104 - adrenodoxin family ferredoxin Similar to Escherichia coli adrenodoxin family ferredoxin [2Fe-2S] Fdx SW:FER_ECOLI (P25528) (110 aa) fasta scores: E(): 0%2C 91.8%25 id in 110 aa%2C and to Vibrio cholerae ferredoxin VC0753 TR:Q9KTX7 (EMBL:AE004160) (139 aa) fasta scores: E(): 0%2C 84.5%25 id in 110 aa gene gene2854 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2891 YPO2892 YPO2892 hsc hsc 3235107 3237059 - chaperone protein HscA Similar to Escherichia coli cold shock-induced chaperone protein HscA SW:HSCA_ECOLI (P36541) (616 aa) fasta scores: E(): 0%2C 78.6%25 id in 650 aa%2C and to Vibrio cholerae chaperone protein HscA TR:Q9KTX8 (EMBL:AE004160) (616 aa) fasta scores: E(): 0%2C 68.7%25 id in 651 aa. CDS contains an insert relative to other orthologues%2C residues 48 to 84. DNA encoding this region contains imperfect repeats. Effect on function not known. gene gene2855 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2892 YPO2893 YPO2893 hscB hscB 3237302 3237826 - chaperone protein HscB Similar to Escherichia coli cold shock-induced chaperone protein HscB SW:HSCB_ECOLI (P36540) (171 aa) fasta scores: E(): 0%2C 66.7%25 id in 171 aa%2C and to Vibrio cholerae chaperone protein HscB TR:Q9KTX9 (EMBL:AE004160) (171 aa) fasta scores: E(): 6.5e-30%2C 50.6%25 id in 170 aa gene gene2856 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2893 YPO2894 YPO2894 YPO2894 3237937 3238260 - conserved hypothetical protein Similar to Escherichia coli hypothetical protein YfhF SW:YFHF_ECOLI (P36539) (107 aa) fasta scores: E(): 0%2C79.4%25 id in 107 aa%2C and to Vibrio cholerae HesB family protein VC0750 TR:Q9KTY0 (EMBL:AE004160) (107 aa) fasta scores: E(): 2.5e-31%2C 73.8%25 id in 107 aa gene gene2857 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2894 YPO2895 YPO2895 nifU nifU 3238530 3238916 - NifU family protein Similar to Escherichia coli NifU-like protein NifU SW:NIFU_ECOLI (P77310) (128 aa) fasta scores: E(): 0%2C 89.8%25 id in 128 aa%2C and to Vibrio cholerae NifU-related protein VC0749 TR:Q9KTY1 (EMBL:AE004160) (127 aa) fasta scores: E(): 0%2C 86.4%25 id in 125 aa gene gene2858 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2895 YPO2896 YPO2896 iscS iscS 3238947 3240176 - putative aminotransferase Similar to Azotobacter vinelandii pyridoxal phosphate-dependent L-cysteine desulfurase IscS TR:O31269 (EMBL:AF010139) (404 aa) fasta scores: E(): 0%2C 72.0%25 id in 404 aa%2C and to Escherichia coli IscS protein homologue YfhO SW:NIFS_ECOLI (P39171) (404 aa) fasta scores: E(): 0%2C 88.9%25 id in 404 aa. Similar to YPO2138 (51.3%25 identity in 386 aa overlap) gene gene2859 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2896 YPO2897 YPO2897 YPO2897 3240230 3240724 - conserved hypothetical protein Similar to Escherichia coli hypothetical protein YfhP SW:YFHP_ECOLI (P77484) (162 aa) fasta scores: E(): 0%2C79.4%25 id in 165 aa%2C and to Vibrio cholerae hypothetical protein VC0747 TR:Q9KTY3 (EMBL:AE004160) (188 aa) fasta scores: E(): 0%2C 79.7%25 id in 143 aa gene gene2860 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2897 YPO2898 YPO2898 YPO2898 3240880 3241653 - putative SpoU-family rRNA methylase Similar to Escherichia coli hypothetical protein TR:P77438 (EMBL:AE000339) (246 aa) fasta scores: E(): 0%2C81.8%25 id in 242 aa%2C and to Vibrio cholerae possible TrmH family RNA methyltransferase VC0746 TR:Q9KTY4 (EMBL:AE004160) (244 aa) fasta scores: E(): 0%2C 64.0%25 id in 239 aa gene gene2861 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2898 YPO2899 YPO2899 suhB suhB 3241772 3242575 + putative inositol monophosphatase family protein Similar to Lycopersicon esculentum myo-inositol monophosphatase IMP1 SW:MYO1_LYCES (P54926) (273 aa) fasta scores: E(): 2.5e-29%2C 35.7%25 id in 263 aa%2C and to Escherichia coli extragenic suppressor protein SuhB TR:BAA16435 (EMBL:M34828) (267 aa) fasta scores: E(): 0%2C83.9%25 id in 267 aa gene gene2862 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2899 YPO2900 YPO2900 tnp tnp 3242779 3243237 + transposase for the IS1541 insertion element Similar to Salmonella typhimurium%2C and Salmonella typhi transposase for insertion sequence IS200 TnpA SW:T200_SALTY (Q57334) (152 aa) fasta scores: E(): 0%2C 94.1%25 id in 152 aa. Identical to the Yersinia pseudotuberculosis IS1541-like element transposase Tnp TR:Q9X9F5 (EMBL:AJ238014) (152 aa) fasta scores: E(): 0%2C 100.0%25 id in 152 aa gene gene2863 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2900 YPO2901 YPO2901 YPO2901 3243384 3244406 - putative membrane protein Similar to Haemophilus influenzae hypothetical protein HI1248 SW:YC48_HAEIN (P44136) (322 aa) fasta scores: E(): 0%2C 38.1%25 id in 310 aa%2C and to Treponema pallidum conserved hypothetical integral membrane protein TP0558 TR:O83569 (EMBL:AE001231) (302 aa) fasta scores: E(): 2.1e-06%2C 24.9%25 id in 281 aa gene gene2864 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2901 YPO2902 YPO2902 YPO2902 3244397 3245071 - putative exported protein Poor database matches%2C similar to Haemophilus influenzae hypothetical protein HI1249 SW:YC49_HAEIN (P44137) (206 aa) fasta scores: E(): 1.8e-29%2C 44.4%25 id in 207 aa gene gene2865 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2902 YPO2903 YPO2903 YPO2903 3245213 3246574 + putative RNA-binding protein Similar to Escherichia coli stationary phase inducible protein CsiE SW:CSIE_ECOLI (P54901) (433 aa) fasta scores: E(): 0%2C 37.5%25 id in 443 aa%2C and to Bacillus subtilis possible transcriptional antiterminator protein YjdC TR:O31644 (EMBL:Z99110) (648 aa) fasta scores: E(): 3.8e-06%2C 22.0%25 id in 368 aa. CDS contains an insert%2Cresidues 117 to 137%2C relative to these database matches gene gene2866 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2903 YPO2904 YPO2904 hcaT hcaT 3246571 3247728 - putative transport permease protein Similar to Bacillus stearothermophilus maltose permease MalA SW:MALA_BACST (Q45632) (394 aa) fasta scores: E(): 4.2e-12%2C 26.1%25 id in 379 aa%2C and to Escherichia coli probable 3-phenylpropionic acid transporter HcaT SW:HCAT_ECOLI (Q47142) (379 aa) fasta scores: E(): 0%2C 66.6%25 id in 377 aa gene gene2867 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2904 YPO2905 YPO2905 ail ail 3248080 3248628 - attachment invasion locus protein Similar to Yersinia pseudotuberculosis attachment invasion locus protein Ail SW:AIL_YERPS (Q56957) (182 aa) fasta scores: E(): 0%2C 98.4%25 id in 182 aa%2C and to Yersinia enterocolitica attachment invasion locus protein precursor Ail SW:AIL_YEREN (P16454) (178 aa) fasta scores: E(): 0%2C74.3%25 id in 179 aa%2C and to Serratia marcescens outer membrane protein precursor Omp4 TR:Q54470 (EMBL:Z37157) (172 aa) fasta scores: E(): 3.3e-23%2C 43.7%25 id in 183 aa gene gene2868 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2905 YPO2906 YPO2906 YPO2906 3248738 3248959 - putative membrane protein Poor database matches%2C similar to N-terminal region of Shigella dysenteriae insertion element iso-IS1 protein InsB SW:ISBN_SHIDY (P03832) (131 aa) fasta scores: E(): 4%2C33.9%25 id in 56 aa. Possible gene remanent gene gene2869 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2906 YPO2907 YPO2907 glyA glyA 3249072 3250325 - serine hydroxymethyltransferase Similar to Salmonella typhimurium serine hydroxymethyltransferase GlyA SW:GLYA_SALTY (P06192) (417 aa) fasta scores: E(): 0%2C 90.2%25 id in 417 aa%2C and to Escherichia coli serine hydroxymethyltransferase GlyA SW:GLYA_ECOLI (P00477) (417 aa) fasta scores: E(): 0%2C 89.9%25 id in 417 aa gene gene2870 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2907 YPO2908 YPO2908 fsrB fsrB 3250866 3252056 + flavohemoprotein Similar to Escherichia coli flavohemoprotein Hmp SW:HMPA_ECOLI (P24232) (396 aa) fasta scores: E(): 0%2C 63.1%25 id in 396 aa%2C and to Erwinia chrysanthemi pathogenicity determinant%2C flavohemoprotein HmpX SW:HMPA_ERWCH (Q47266) (395 aa) fasta scores: E(): 0%2C 64.7%25 id in 397 aa gene gene2871 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2908 YPO2909 YPO2909 YPO2909 3252487 3253417 + conserved hypothetical protein (pseudogene) Similar to Escherichia coli hypothetical protein YhfZ SW:YHFZ_ECOLI (P45552) (273 aa) fasta scores: E(): 0%2C52.0%25 id in 273 aa%2C and to Bacillus halodurans hypothetical protein BH0586 TR:Q9KF99 (EMBL:AP001509) (306 aa) fasta scores: E(): 1.9e-29%2C 34.9%25 id in 307 aa. Possible alternative translational start sites. Contains a frameshift after codon 189. Frame shift occurs at a poly A decamer. The sequence has been checked and is believed to be correct pseudogene gene2872 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2909 YPO2911 YPO2911 glnB glnB 3253589 3253927 - nitrogen regulatory protein P-II Similar to Klebsiella pneumoniae nitrogen regulatory protein P-II GlnB SW:GLNB_KLEPN (P11671) (112 aa) fasta scores: E(): 0%2C 90.2%25 id in 112 aa%2C and to Escherichia coli nitrogen regulatory protein P-II 1 GlnB SW:GLNB_ECOLI (P05826) (112 aa) fasta scores: E(): 0%2C 90.2%25 id in 112 aa. Similar to YPO3143 (68.8%25 identity in 112 aa overlap) gene gene2873 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2911 YPO2912 YPO2912 adgA adgA 3253942 3255564 - putative glutamine-dependent NAD Similar to Rhodobacter capsulatus glutamine-dependent NAD synthetase NadE SW:NADE_RHOCA (Q03638) (552 aa) fasta scores: E(): 0%2C 44.4%25 id in 547 aa%2Cand to Xylella fastidiosa NH3-dependent NAD synthetase XF1961 TR:Q9PC24 (EMBL:AE004015) (545 aa) fasta scores: E(): 0%2C 49.2%25 id in 543 aa gene gene2874 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2912 YPO2914 YPO2914 YPO2914 3255724 3257061 - two-component system response regulator Similar to Escherichia coli labile hydrogenase transcriptional regulatory protein HydG SW:HYDG_ECOLI (P14375) (441 aa) fasta scores: E(): 0%2C 44.9%25 id in 439 aa%2Cand to Escherichia coli hypothetical protein YfhA SW:YFHA_ECOLI (P21712) (444 aa) fasta scores: E(): 0%2C 87.8%25 id in 441 aa. Probable sigma-54 dependent transcription regulatory protein gene gene2875 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2914 YPO2915 YPO2915 YPO2915 3257024 3258019 - putative lipoprotein No significant database matches to the full length CDS. Internal region similar to Escherichia coli hypothetical protein YfhG SW:YFHG_ECOLI (P37328) (237 aa) fasta scores: E(): 2.4e-22%2C 45.8%25 id in 216 aa. Possible alternative translational start sites gene gene2876 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2915 YPO2916 YPO2916 YPO2916 3258095 3259546 - two-component system sensor kinase Similar to Streptomyces coelicolor and Streptomyces lividans two-component sensor kinase involved in copper metabolism CutS SW:CUTS_STRCO (Q03757) (414 aa) fasta scores: E(): 3.9e-14%2C 30.0%25 id in 300 aa%2C and to Escherichia coli probable sensor protein YfhK SW:YFHK_ECOLI (P52101) (496 aa) fasta scores: E(): 0%2C 71.9%25 id in 474 aa. Probable two-component system histidine sensor kinase gene gene2877 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2916 YPO2917 YPO2917 tnp tnp 3259752 3260210 - transposase for the IS1541 insertion element Similar to Salmonella typhimurium and Salmonella typhi transposase for insertion sequence IS200%2C TnpA%2CSW:TNPA_SALTY (Q57334) (152 aa) fasta scores: E(): 0%2C 93.4%25 id in 152 aa. Almost identical to the Yersinia pseudotuberculosis IS1541-like element transposase Tnp TR:Q9X9F5 (EMBL:AJ238014) (152 aa) fasta scores: E(): 0%2C99.3%25 id in 152 aa gene gene2878 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2917 YPO2918 YPO2918 YPO2918 3261437 3261997 + putative exported protein No significant database matches gene gene2879 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2918 YPO2919 YPO2919 YPO2919 3262320 3262898 + hypothetical protein no significant database hits%2C some similarity to an internal region of Bacillus subtilis hypothetical protein YdcQ TR:P96634 (EMBL:AB001488) (480 aa) fasta scores: E(): 7.3%2C 21.6%25 id in 185 aa gene gene2880 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2919 YPO2921 YPO2921 purI purI 3263310 3267200 - phosphoribosylformylglycinamidine synthase Similar to Escherichia coli phosphoribosylformylglycinamidine synthase PurL SW:PURL_ECOLI (P15254) (1295 aa) fasta scores: E(): 0%2C82.3%25 id in 1296 aa%2C and to Salmonella typhimurium phosphoribosylformylglycinamidine synthase PurL TR:P74881 (EMBL:U68728) (1295 aa) fasta scores: E(): 0%2C 82.6%25 id in 1296 aa gene gene2881 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2921 YPO2922 YPO2922 YPO2922 3267516 3268976 + putative membrane protein N-terminal region similar to Escherichia coli cystine-binding periplasmic protein FliY SW:FLIY_ECOLI (P39174) (266 aa) fasta scores: E(): 1.8e-08%2C 26.2%25 id in 271 aa. A larger portion of the CDS%2C including the C-terminal region%2C is similar to Escherichia coli hypothetical protein YfhD SW:YFHD_ECOLI (P30135) (472 aa) fasta scores: E(): 0%2C 61.4%25 id in 435 aa. The C-terminal region contains a transglycosylase SLT domain. Possible alternative translational start sites. gene gene2882 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2922 YPO2923 YPO2923 YPO2923 3269085 3269564 - putative zinc-binding protein Similar to Pseudomonas putida CumB TR:Q9X3V3 (EMBL:AF086638) (145 aa) fasta scores: E(): 7.3e-27%2C 52.8%25 id in 144 aa%2C and to Bradyrhizobium japonicum nitrogen fixation protein TR:Q45258 (EMBL:L34743) (142 aa) fasta scores: E(): 2e-21%2C 47.2%25 id in 142 aa%2C and to Escherichia coli hypothetical protein YfhC SW:YFHC_ECOLI (P30134) (178 aa) fasta scores: E(): 0%2C 71.1%25 id in 166 aa gene gene2883 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2923 YPO2924 YPO2924 yfhB yfhB 3269758 3270405 - putative membrane protein Similar to Escherichia coli hypothetical protein YfhB SW:YFHB_ECOLI (P30133) (211 aa) fasta scores: E(): 0%2C66.5%25 id in 206 aa%2C and to Caulobacter crescentus hypothetical protein CicA SW:CICA_CAUCR (O87707) (222 aa) fasta scores: E(): 0.0044%2C 24.1%25 id in 199 aa gene gene2884 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2924 YPO2925 YPO2925 YPO2925 3270680 3271567 - putative glucokinase protein Similar to Escherichia coli hypothetical protein YfeU SW:YFEU_ECOLI (P76535) (298 aa) fasta scores: E(): 0%2C57.6%25 id in 295 aa%2C and to Vibrio cholerae glucokinase regulatory protein-related protein VC0690 TR:Q9KU39 (EMBL:AE004155) (307 aa) fasta scores: E(): 0%2C 63.3%25 id in 294 aa gene gene2885 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2925 YPO2926 YPO2926 YPO2926 3271775 3272614 + putative RpiR-family transcriptional regulatory protein Similar to Escherichia coli negative regulator of ribose phosphate isomerase B%2C RpiR SW:RPIR_ECOLI (P39266) (296 aa) fasta scores: E(): 1e-12%2C 21.8%25 id in 275 aa%2C and to Escherichia coli hypothetical protein YfhH SW:YFHH_ECOLI (P37767) (282 aa) fasta scores: E(): 0%2C 60.6%25 id in 282 aa gene gene2886 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2926 YPO2927 YPO2927 fdx fdx 3272776 3273036 + putative [4Fe-4S] ferredoxin Similar to Chromatium vinosum 2[4Fe-4S] ferredoxin Fdx SW:FER_CHRVI (P00208) (82 aa) fasta scores: E(): 5.8e-17%2C 60.5%25 id in 76 aa%2C and to Escherichia coli putative ferredoxin-like protein YfhL SW:YFHL_ECOLI (P52102) (86 aa) fasta scores: E(): 9.7e-30%2C 79.1%25 id in 86 aa gene gene2887 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2927 YPO2928 YPO2928 tnp tnp 3273192 3273650 - transposase for the IS1541 insertion element Similar to Salmonella typhimurium%2C and Salmonella typhi transposase for insertion sequence IS200 TnpA SW:T200_SALTY (Q57334) (152 aa) fasta scores: E(): 0%2C 94.1%25 id in 152 aa. Identical to the Yersinia pseudotuberculosis IS1541-like element transposase Tnp TR:Q9X9F5 (EMBL:AJ238014) (152 aa) fasta scores: E(): 0%2C 100.0%25 id in 152 aa gene gene2888 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2928 YPO2929 YPO2929 acpS acpS 3273852 3274232 - holo-[acyl-carrier protein] synthase Similar to Escherichia coli holo-[acyl-carrier protein] synthase AcpS SW:ACPS_ECOLI (P24224) (125 aa) fasta scores: E(): 0%2C 76.8%25 id in 125 aa%2C and to Vibrio cholerae holo-[acyl-carrier protein] synthase VC2457 TR:Q9KPB6 (EMBL:AE004316) (126 aa) fasta scores: E(): 2.4e-23%2C 54.5%25 id in 123 aa gene gene2889 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2929 YPO2930 YPO2930 pdxJ pdxJ 3274232 3274963 - pyridoxal phosphate biosynthetic protein PdxJ Similar to Escherichia coli pyridoxal phosphate biosynthetic protein PdxJ SW:PDXJ_ECOLI (P24223) (242 aa) fasta scores: E(): 0%2C 81.3%25 id in 241 aa%2C and to Vibrio cholerae pyridoxal phosphate biosynthetic protein PdxJ TR:Q9KPB5 (EMBL:AE004316) (243 aa) fasta scores: E(): 0%2C69.5%25 id in 243 aa gene gene2890 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2930 YPO2931 YPO2931 ypmt1.57c ypmt1.57c 3275153 3275935 - insertion sequence IS100%2C ATP-binding protein Similar to Escherichia coli insertion sequence IS21 putative ATP-binding protein%2C IstB SW:ISTB_ECOLI (P15026) (265 aa) fasta scores: E(): 0%2C 47.4%25 id in 249 aa. Also almost identical to Yersinia pestis and Escherichia coli putative IS100 transposase ypmt1.57c TR:Q9R3L5 (EMBL:AL117211) (260 aa) fasta scores: E(): 0%2C 99.6%25 id in 260 aa. gene gene2891 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2931 YPO2932 YPO2932 y1093 y1093 3275932 3276954 - transposase for insertion sequence IS100 Similar to Escherichia coli transposase for insertion sequence element IS21 IstA SW:ISTA_ECOLI (P15025) (390 aa) fasta scores: E(): 3e-27%2C 33.1%25 id in 329 aa. Identical to the previously sequenced Yersinia pestis%2CYersinia pseudotuberculosis%2C and Escherichia coli pesticin plasmid insertion sequence transposase Y1055 TR:P74993 (EMBL:U59875) (340 aa) fasta scores: E(): 0%2C 100.0%25 id in 340 aa gene gene2892 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2932 YPO2933 YPO2933 YPO2933 3277040 3277600 - hypothetical protein (pseudogene) No significant database matches to the full length CDS. N-terminal region similar to the N-terminus of Escherichia coli O157:H7 putative transcriptional regulator YggD TR:AAG58060 (EMBL:AE005523) (169 aa) fasta scores: E(): 0.92%2C 31.5%25 id in 149 aa. CDS translational stop lies within the downstream IS100 element. Therefore CDS is probably disrupted by the insertion (at the C-terminal end) of the IS100 element. It is not clear whether this insertion affects the function of the protein. pseudogene gene2893 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2933 YPO2934 YPO2934 YPO2934 3277633 3278982 - conserved hypothetical protein Similar to Pseudomonas aeruginosa hypothetical protein PA0079 TR:AAG03469 (EMBL:AE004447) (444 aa) fasta scores: E(): 0%2C 36.7%25 id in 444 aa%2C and to Vibrio cholerae hypothetical protein VCA0114 TR:Q9KN51 (EMBL:AE004353) (444 aa) fasta scores: E(): 0%2C 32.8%25 id in 445 aa gene gene2894 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2934 YPO2935 YPO2935 YPO2935 3278986 3279546 - putative exported protein Similar to Pseudomonas aeruginosa hypothetical protein PA0080 TR:AAG03470 (EMBL:AE004447) (154 aa) fasta scores: E(): 8.9e-11%2C 33.1%25 id in 133 aa%2C and to Vibrio cholerae hypothetical protein VCA0113 TR:Q9KN52 (EMBL:AE004353) (158 aa) fasta scores: E(): 1.5e-07%2C 28.5%25 id in 137 aa gene gene2895 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2935 YPO2937 YPO2937 YPO2937 3279799 3280284 - conserved hypothetical protein Similar to Edwardsiella ictaluri putative hypothetical protein Eip18 TR:O52405 (EMBL:AF037441) (163 aa) fasta scores: E(): 2.5e-14%2C 35.1%25 id in 148 aa gene gene2896 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2937 YPO2938 YPO2938 YPO2938 3280610 3282112 - conserved hypothetical protein Similar to Edwardsiella ictaluri putative hypothetical protein Eip55 TR:O52406 (EMBL:AF037441) (495 aa) fasta scores: E(): 0%2C 49.9%25 id in 495 aa%2C and to Vibrio cholerae hypothetical protein VCA0108 TR:Q9KN57 (EMBL:AE004353) (492 aa) fasta scores: E(): 0%2C 39.6%25 id in 498 aa. Similar to YPO0501 (61.4%25 identity in 479 aa overlap) gene gene2897 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2938 YPO2939 YPO2939 YPO2939 3282136 3282660 - conserved hypothetical protein Similar to Pseudomonas aeruginosa hypothetical protein PA0083 TR:AAG03473 (EMBL:AE004447) (172 aa) fasta scores: E(): 0%2C 73.6%25 id in 174 aa%2C and to Edwardsiella ictaluri hypothetical protein Eip20 TR:O52407 (EMBL:AF037441) (170 aa) fasta scores: E(): 5e-21%2C 42.5%25 id in 160 aa. Similar to YPO0500 (59.3%25 identity in 162 aa overlap) gene gene2898 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2939 YPO2940 YPO2940 YPO2940 3282765 3283319 - fimbrial protein Similar to Escherichia coli major fimbrial subunit precursor F17B-A TR:Q47201 (EMBL:L14318) (180 aa) fasta scores: E(): 8.9e-08%2C 32.8%25 id in 174 aa%2C and to Proteus mirabilis uroepithelial cell adherence protein Uca TR:Q51889 (EMBL:U28420) (180 aa) fasta scores: E(): 2.2e-07%2C 32.7%25 id in 162 aa gene gene2899 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2940 YPO2942 YPO2942 y1062 y1062 3284573 3285781 + transposase for the IS285 insertion element Previously sequenced Yersinia pestis transposase Y1062 or Ypmt1.80C TR:O68779 (EMBL:AF053947) (402 aa) fasta scores: E(): 0%2C 100.0%25 id in 402 aa. gene gene2901 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2942 YPO2943 YPO2943 YPO2943 3283361 3284500 - outer membrane usher protein (pseudogene) Similar to Escherichia coli outer membrane usher protein HtrE SW:HTRE_ECOLI (P33129) (865 aa) fasta scores: E(): 0%2C 34.6%25 id in 856 aa%2C and to Yersinia pestis putative outer membrane usher protein TR:Q9ZC30 (EMBL:AL031866) (863 aa) fasta scores: E(): 0%2C 29.5%25 id in 881 aa. CDS disrupted by the insertion of an IS285 element at codon 512. pseudogene gene2900 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2943 YPO2944 YPO2944 YPO2944 3287481 3288260 - putative pili chaperone protein Similar to Escherichia coli chaperone protein EcpD SW:ECPD_ECOLI (P33128) (246 aa) fasta scores: E(): 0%2C 40.2%25 id in 246 aa%2C and to Pseudomonas aeruginosa probable pili asembly chaperone PA4085 TR:AAG07472 (EMBL:AE004825) (248 aa) fasta scores: E(): 6.4e-30%2C 38.6%25 id in 220 aa gene gene2902 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2944 YPO2945 YPO2945 YPO2945 3288399 3288944 - frimbrial protein Similar to Proteus mirabilis uroepithelial cell adherence protein Uca TR:Q51889 (EMBL:U28420) (180 aa) fasta scores: E(): 1.1e-13%2C 36.7%25 id in 177 aa%2C and to Escherichia coli F17A fimbrial subunit protein TR:Q9RH95 (EMBL:AF055307) (180 aa) fasta scores: E(): 1.1e-13%2C 38.4%25 id in 172 aa gene gene2903 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2945 YPO2946 YPO2946 clpB5 clpB5 3289145 3291820 - Clp ATPase Similar to Escherichia coli ClpB protein%2C which is thought to form part of a multi-chaperone system supressing protein aggregation%2C SW:CLPB_ECOLI (P03815) (857 aa) fasta scores: E(): 0%2C 37.4%25 identity in 866 aa overlap and to Yersinia enterocolitica Clp protease-associated protein ClpB TR:AAG00524 (EMBL:AF285784) (890 aa) fasta scores: E(): 0%2C 87.7%25 id in 884 aa. Also significantly similar to the products of the Y. pestis CDS: YPO0506%2C YPO0971%2CYPO1471%2C YPO3275 and YPO3599. gene gene2904 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2946 YPO2947 YPO2947 YPO2947 3292603 3294483 + conserved hypothetical protein Similar to Pseudomonas aeruginosa hypothetical protein PA0088 TR:AAG03478 (EMBL:AE004447) (619 aa) fasta scores: E(): 0%2C 41.5%25 id in 627 aa%2C and to Vibrio cholerae hypothetical protein VCA0110 TR:Q9KN55 (EMBL:AE004353) (589 aa) fasta scores: E(): 3e-14%2C 29.0%25 id in 625 aa gene gene2905 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2947 YPO2948 YPO2948 YPO2948 3294483 3295508 + conserved hypothetical protein Similar to Pseudomonas aeruginosa hypothetical protein PA0089 TR:AAG03479 (EMBL:AE004447) (348 aa) fasta scores: E(): 0%2C 38.1%25 id in 302 aa%2C and to Pseudomonas aeruginosa hypothetical protein PA2370 TR:AAG05758 (EMBL:AE004663) (338 aa) fasta scores: E(): 3.2e-14%2C 27.7%25 id in 289 aa gene gene2906 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2948 YPO2949 YPO2949 YPO2949 3295607 3296788 + hypothetical protein no significant database hits to the full length CDS. Similar to Pseudomonas aeruginosa hypothetical protein PA0082 TR:AAG03472 (EMBL:AE004447) (344 aa) fasta scores: E(): 4e-06%2C 23.2%25 id in 384 aa gene gene2907 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2949 YPO2950 YPO2950 YPO2950 3296795 3297826 + putative fimbrial protein Similar to Escherichia coli K99 fibrillae protein FanF SW:FANF_ECOLI (P25448) (333 aa) fasta scores: E(): 0.15%2C 24.2%25 id in 297 aa. N-terminal region similar to Escherichia coli F16 P-fimbriae major subunit protein FsiA TR:P71221 (EMBL:Y08930) (167 aa) fasta scores: E(): 0.012%2C27.9%25 id in 147 aa gene gene2908 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2950 YPO2951 YPO2951 YPO2951 3297866 3299203 + hypothetical protein no significant database hits gene gene2909 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2951 YPO2952 YPO2952 YPO2952 3299200 3299883 + putative membrane protein Poor database matches. Some similarity to an internal region of Caenorhabditis elegans hydroxymethylglutaryl-CoA synthase SW:HMCS_CAEEL (P54871) (458 aa) fasta scores: E(): 6%2C 25.4%25 id in 193 aa gene gene2910 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2952 YPO2953 YPO2953 YPO2953 3299884 3301566 + putative membrane protein No significant database matches to the full length CDS. C-terminus similar to C-terminal region of Pseudomonas aeruginosa probable outer membrane protein PA3692 TR:AAG07080 (EMBL:AE004788) (261 aa) fasta scores: E(): 6.7e-09%2C 35.6%25 id in 135 aa gene gene2911 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2953 YPO2954 YPO2954 YPO2954 3301563 3302045 + hypothetical protein no significant database hits gene gene2912 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2954 YPO2955 YPO2955 YPO2955 3302403 3303005 - putative luxR-family regulatory protein Similar to Klebsiella aerogenes colanic acid capsular biosynthesis activation protein A RcsA SW:RCSA_KLEAE (P05338) (207 aa) fasta scores: E(): 0.15%2C21.4%25 id in 201 aa%2C and to Vibrio fischeri bioluminescence operon transcriptional activator protein LuxR SW:LUXR_VIBFI (P12746) (250 aa) fasta scores: E(): 0.24%2C 25.5%25 id in 208 aa gene gene2913 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2955 YPO2957 YPO2957 mltB mltB 3304260 3305372 - putative membrane-bound lytic murein transglycosylase B Similar to Escherichia coli membrane-bound lytic murein transglycosylase B MltB SW:MLTB_ECOLI (P41052) (361 aa) fasta scores: E(): 0%2C 74.2%25 id in 360 aa%2C and to Pseudomonas aeruginosa membrane-bound lytic transglycosylase MltB1 TR:AAG07832 (EMBL:AE004859) (367 aa) fasta scores: E(): 0%2C 69.2%25 id in 370 aa gene gene2914 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2957 YPO2958 YPO2958 sfuA sfuA 3305683 3306702 + iron(III)-binding periplasmic protein Similar to Serratia marcescens iron(III)-binding periplasmic protein SfuA SW:SFUA_SERMA (P21408) (338 aa) fasta scores: E(): 0%2C 80.8%25 id in 339 aa%2C and to Yersinia enterocolitica probable iron transport system protei YfuA TR:Q56925 (EMBL:Z47200) (338 aa) fasta scores: E(): 0%2C83.5%25 id in 339 aa gene gene2915 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2958 YPO2959 YPO2959 sfuB sfuB 3306758 3308344 + iron(III)-transport system permease Similar to Serratia marcescens iron(III)-transport system permease SfuB SW:SFUB_SERMA (P21409) (527 aa) fasta scores: E(): 0%2C 78.8%25 id in 533 aa%2C and to Yersinia enterocolitica iron transport system protein YfuB TR:Q56926 (EMBL:Z47200) (528 aa) fasta scores: E(): 0%2C 87.1%25 id in 528 aa gene gene2916 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2959 YPO2960 YPO2960 sfuC sfuC 3308341 3309390 + iron(III)-transport ATP-binding protein Similar to Serratia marcescens iron(III)-transport ATP-binding protein SfuC SW:SFUC_SERMA (P21410) (345 aa) fasta scores: E(): 0%2C 72.1%25 id in 348 aa%2C and to Yersinia enterocolitica iron transport system protein YfuC TR:Q56927 (EMBL:Z47200) (349 aa) fasta scores: E(): 0%2C 77.1%25 id in 349 aa gene gene2917 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2960 YPO2961 YPO2961 YPO2961 3309463 3309987 - putative membrane protein Similar to Lactococcus lactis hypothetical protein TcsEorf2 TR:Q9JN51 (EMBL:U81488) (171 aa) fasta scores: E(): 1.4e-12%2C 31.7%25 id in 167 aa%2C and to Vibrio cholerae hypothetical protein VC1575 TR:Q9KRR1 (EMBL:AE004235) (152 aa) fasta scores: E(): 0.17%2C 23.0%25 id in 148 aa gene gene2918 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2961 YPO2962 YPO2962 YPO2962 3310448 3310933 + conserved hypothetical protein Similar to Escherichia coli hypothetical protein YhhZ SW:YHHZ_ECOLI (P46855) (392 aa) fasta scores: E(): 1.9e-16%2C 43.6%25 id in 149 aa%2C and to Pseudomonas aeruginosa secreted protein HcpB TR:AAG04901 (EMBL:AE004939) (172 aa) fasta scores: E(): 0.0041%2C 37.1%25 id in 167 aa. Similar to YPO2793 (64.8%25 identity in 159 aa overlap)%2C YPO2868 (59.1%25 identity in 159 aa overlap) and YPO1872 (60.5%25 identity in 114 aa overlap) gene gene2919 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2962 YPO2963 YPO2963 YPO2963 3311163 3312011 - hypothetical protein No significant database matches to the full length CDS. Similar to an internal region of Acidianus ambivalens signal recognition particle receptor Sra TR:Q46492 (EMBL:X95989) (374 aa) fasta scores: E(): 5.4%2C 21.2%25 id in 297 aa gene gene2920 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2963 YPO2965 YPO2965 dmsA dmsA 3312842 3315268 + putative dimethyl sulfoxide reductase chain A protein Similar to Escherichia coli anaerobic dimethyl sulfoxide reductase chain A protein DmsA SW:DMSA_ECOLI (P18775) (785 aa) fasta scores: E(): 0%2C 51.6%25 id in 812 aa%2Cand to Escherichia coli putative oxidoreductase%2C major subunit protein YnfE SW:YNFE_ECOLI (P77374) (808 aa) fasta scores: E(): 0%2C 52.0%25 id in 816 aa. Similar to YPO3325 (50.5%25 identity in 823 aa overlap) gene gene2921 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2965 YPO2966 YPO2966 dmsB dmsB 3315280 3315897 + putative dimethyl sulfoxide reductase chain B protein Similar to Escherichia coli anaerobic dimethyl sulfoxide reductase chain B protein DmsB SW:DMSB_ECOLI (P18776) (204 aa) fasta scores: E(): 0%2C 61.1%25 id in 203 aa%2Cand to Yersinia pestis probable dimethyl sulfoxide reductase subunit B protein DmsB TR:Q9X6B5 (EMBL:AF135170) (205 aa) fasta scores: E(): 0%2C 63.5%25 id in 203 aa. Similar to YPO3324 (63.5%25 identity in 203 aa overlap) gene gene2922 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2966 YPO2967 YPO2967 dmsC dmsC 3315899 3316675 + putative dimethyl sulfoxide reductase chain C protein Similar to Escherichia coli anaerobic dimethyl sulfoxide reductase chain C protein DmsC SW:DMSC_ECOLI (P18777) (287 aa) fasta scores: E(): 1.1e-10%2C 32.6%25 id in 273 aa%2C and to Yersinia pestis probable dimethyl sulfoxide reductase subunit C DmsC TR:Q9X6B4 (EMBL:AF135170) (286 aa) fasta scores: E(): 4.7e-12%2C 33.7%25 id in 276 aa gene gene2923 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2967 YPO2968 YPO2968 YPO2968 3317088 3317753 + conserved hypothetical protein Similar to Yersinia pestis hypothetical protein TR:Q9X6B3 (EMBL:AF135170) (236 aa) fasta scores: E(): 3.7e-16%2C 36.2%25 id in 210 aa%2C and to Escherichia coli hypothetical protein YnfI SW:YNFI_ECOLI (P76174) (207 aa) fasta scores: E(): 3.6e-18%2C 34.6%25 id in 191 aa. Lack of similarity at the N-terminus gene gene2924 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2968 YPO2969 YPO2969 YPO2969 3317750 3318319 + putative iron-sulphur protein Similar to Rhodobacter sphaeroides probable iron-sulphur containing protein NapF TR:O86474 (EMBL:Z46806) (160 aa) fasta scores: E(): 1.2e-09%2C 30.3%25 id in 145 aa%2C and to Haemophilus influenzae hypothetical ferredoxin-type protein HI1043 SW:YA43_HAEIN (P44101) (166 aa) fasta scores: E(): 8.3e-12%2C 32.2%25 id in 177 aa gene gene2925 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2969 YPO2970 YPO2970 YPO2970 3318565 3319221 - putative lipoprotein Similar to Neisseria meningitidis putative lipoprotein GNA1162 TR:Q9JPN0 (EMBL:AF226570) (215 aa) fasta scores: E(): 0%2C 55.3%25 id in 206 aa. N-terminal region similar to Pseudomonas aeruginosa hypothetical protein PA0047 TR:AAG03437 (EMBL:AE004444) (169 aa) fasta scores: E(): 0%2C 63.5%25 id in 167 aa gene gene2926 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2970 YPO2971 YPO2971 YPO2971 3319218 3319574 - putative lipoprotein Similar to Pseudomonas aeruginosa hypothetical protein PA0046 TR:AAG03436 (EMBL:AE004444) (117 aa) fasta scores: E(): 2.1e-16%2C 45.6%25 id in 114 aa%2C and to Neisseria meningitidis (serogroup A) putative periplasmic protein NMA1334 TR:Q9JQZ2 (EMBL:AL162755) (123 aa) fasta scores: E(): 4.2e-10%2C 37.9%25 id in 116 aa gene gene2927 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2971 YPO2972 YPO2972 YPO2972 3319601 3320272 - putative lipoprotein Similar to Neisseria meningitidis (serogroup A) putative periplasmic protein NMA1335 TR:Q9JRF1 (EMBL:AL162755) (223 aa) fasta scores: E(): 0%2C 76.4%25 id in 208 aa%2C and to Pseudomonas aeruginosa hypothetical protein PA0045 TR:AAG03435 (EMBL:AE004444) (228 aa) fasta scores: E(): 0%2C 72.7%25 id in 220 aa gene gene2928 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2972 YPO2973 YPO2973 YPO2973 3320862 3321293 + hypothetical protein Weakly similar to Escherichia coli hypothetical protein YdcQ SW:YDCQ_ECOLI (P76107) (145 aa) fasta scores: E(): 7.1e-07%2C 27.6%25 id in 134 aa gene gene2929 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2973 YPO2974 YPO2974 YPO2974 3321388 3321912 - putative B-type cytochrome Similar to Escherichia coli cytochrome b561 CybB SW:C561_ECOLI (P08732) (176 aa) fasta scores: E(): 4.5e-26%2C42.3%25 id in 175 aa%2C and to Yersinia pestis probable cytochrome b561 CybB SW:C561_YERPE (Q9X6B2) (176 aa) fasta scores: E(): 1.8e-26%2C 39.4%25 id in 175 aa gene gene2930 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2974 YPO2975 YPO2975 YPO2975 3322157 3323392 - putative aminotransferase Similar to Pseudomonas aeruginosa probable aminotransferase PA4715 TR:AAG08101 (EMBL:AE004885) (411 aa) fasta scores: E(): 0%2C 90.1%25 id in 404 aa%2C and to Escherichia coli hypothetical aminotransferase YfdZ SW:YFDZ_ECOLI (P77434) (412 aa) fasta scores: E(): 0%2C 87.8%25 id in 411 aa gene gene2931 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2975 YPO2976 YPO2976 YPO2976 3323658 3324905 + conserved hypothetical protein Similar to Escherichia coli hypothetical protein YbiU SW:YBIU_ECOLI (P75791) (421 aa) fasta scores: E(): 0%2C50.2%25 id in 420 aa gene gene2932 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2976 YPO2977 YPO2977 glk glk 3324983 3325954 - glucokinase Similar to Escherichia coli glucokinase Glk SW:HXKG_ECOLI (P46880) (321 aa) fasta scores: E(): 0%2C 79.4%25 id in 321 aa%2C and to Neisseria meningitidis (serogroup A) glucokinase Glk TR:Q9JQX3 (EMBL:AL162756) (328 aa) fasta scores: E(): 0%2C 46.6%25 id in 313 aa gene gene2933 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2977 YPO2978 YPO2978 YPO2978 3326135 3326662 - putative membrane protein Similar to Pseudomonas aeruginosa hypothetical protein PA2880 TR:AAG06268 (EMBL:AE004714) (171 aa) fasta scores: E(): 6e-23%2C 46.0%25 id in 139 aa%2C and to Vitreoscilla sp hypothetical protein TR:Q9XD48 (EMBL:AF114793) (152 aa) fasta scores: E(): 2.8e-17%2C 41.4%25 id in 140 aa gene gene2934 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2978 YPO2979 YPO2979 YPO2979 3326714 3327592 + putative lysR-family transcriptional regulatory protein Similar to Pseudomonas aeruginosa exotoxin A transcriptional regulator PtxR TR:P72131 (EMBL:U35068) (312 aa) fasta scores: E(): 1.9e-08%2C 28.1%25 id in 270 aa%2C and to Pseudomonas aeruginosa probable transcriptional regulator PA2879 TR:AAG06267 (EMBL:AE004714) (296 aa) fasta scores: E(): 0%2C 51.0%25 id in 292 aa gene gene2935 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2979 YPO2980 YPO2980 YPO2980 3327728 3328717 + putative ion channel protein Similar to Homo sapiens voltage-gated potassium channel beta-2 protein Kv-beta-2 TR:Q13303 (EMBL:U33429) (367 aa) fasta scores: E(): 3.3e-31%2C 33.9%25 id in 339 aa%2Cand to Streptomyces coelicolor putative ion channel subunit SC5H1.21C TR:Q9X7S9 (EMBL:AL049863) (319 aa) fasta scores: E(): 0%2C 62.1%25 id in 317 aa gene gene2936 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2980 YPO2981 YPO2981 YPO2981 3328888 3329301 + putative exported protein Similar to Escherichia coli hypothetical protein YpeC SW:YPEC_ECOLI (P76527) (108 aa) fasta scores: E(): 3.7e-12%2C 43.7%25 id in 126 aa%2C and to Escherichia coli hypothetical protein YaaX SW:YAAX_ECOLI (P75616) (98 aa) fasta scores: E(): 9.6e-07%2C 35.7%25 id in 112 aa. Lack of similarity at the N-terminus. Possible alternative translational start sites. gene gene2937 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2981 YPO2982 YPO2982 mntH mntH 3329394 3330623 - manganese transport protein MntH probale NRAMP (natural resistance-associated macrophage proteins) family protein. Similar to Escherichia coli manganese transport protein MntH SW:MNTH_ECOLI (P77145) (412 aa) fasta scores: E(): 0%2C 77.7%25 id in 408 aa%2Cand to Salmonella typhimurium manganese transport protein MntH SW:MNTH_SALTY (Q9RPF4) (413 aa) fasta scores: E(): 0%2C77.5%25 id in 408 aa gene gene2938 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2982 YPO2983 YPO2983 cru cru 3331058 3332242 + nucleoside permease Similar to Escherichia coli nucleoside permease NupC SW:NUPC_ECOLI (P33031) (400 aa) fasta scores: E(): 0%2C 81.0%25 id in 400 aa%2C and to Bacillus subtilis pyrimidine nucleoside transport protein NupC SW:NUPC_BACSU (P39141) (393 aa) fasta scores: E(): 0%2C 60.0%25 id in 385 aa gene gene2939 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2983 YPO2984 YPO2984 gltX gltX 3333476 3334891 + glutamyl-tRNA synthetase Similar to Escherichia coli glutamyl-tRNA synthetase GltX SW:SYE_ECOLI (P04805) (471 aa) fasta scores: E(): 0%2C84.1%25 id in 471 aa%2C and to Haemophilus influenzae glutamyl-tRNA synthetase GltX SW:SYE_HAEIN (P43818) (480 aa) fasta scores: E(): 0%2C 72.1%25 id in 469 aa gene gene2940 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2984 YPO2985 YPO2985 tnp tnp 3335084 3335542 + transposase for the IS1541 insertion element Similar to Salmonella typhimurium%2C and Salmonella typhi transposase for insertion sequence IS200 TnpA SW:T200_SALTY (Q57334) (152 aa) fasta scores: E(): 0%2C 94.1%25 id in 152 aa. Identical to the Yersinia pseudotuberculosis IS1541-like element transposase Tnp TR:Q9X9F5 (EMBL:AJ238014) (152 aa) fasta scores: E(): 0%2C 100.0%25 id in 152 aa gene gene2941 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2985 YPO2986 YPO2986 YPO2986 3336256 3336861 + conserved hypothetical protein Similar to Vibrio cholerae hypothetical protein VCA0380 TR:Q9KMH4 (EMBL:AE004374) (201 aa) fasta scores: E(): 9.9e-10%2C 42.9%25 id in 198 aa. CDS is truncated at the N-terminus in comparison to the V. cholerae protein gene gene2942 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2986 YPO2987 YPO2987 YPO2987 3336993 3337340 + putative exported protein no significant database hits to the full length CDS. Weakly similar to internal region of Bartonella henselae antigen protein TR:Q45198 (EMBL:U23447) (160 aa) fasta scores: E(): 9.6%2C 36.4%25 id in 88 aa. N-terminal region of the CDS is serine rich%2C 13 residues out of the first 25. Contains coiled-coil domain%2C residues 32 to 70 gene gene2943 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2987 YPO2988 YPO2988 YPO2988 3337441 3337656 - conserved hypothetical protein Similar to Escherichia coli hypothetical protein YpeB SW:YPEB_ECOLI (P56604) (72 aa) fasta scores: E(): 2.8e-20%2C 79.7%25 id in 69 aa%2C and to Pseudomonas aeruginosa hypothetical protein PA3612 TR:AAG07000 (EMBL:AE004781) (73 aa) fasta scores: E(): 2.6e-18%2C 66.7%25 id in 69 aa gene gene2944 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2988 YPO2989 YPO2989 dnaL dnaL 3337676 3339688 - DNA ligase Similar to Escherichia coli DNA ligase LigA SW:DNLJ_ECOLI (P15042) (671 aa) fasta scores: E(): 0%2C 78.5%25 id in 670 aa%2C and to Vibrio cholerae probable DNA ligase VC0971 TR:Q9KTD1 (EMBL:AE004178) (669 aa) fasta scores: E(): 0%2C 65.0%25 id in 669 aa gene gene2945 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2989 YPO2990 YPO2990 zipA zipA 3339779 3340765 - putative cell division protein Similar to Escherichia coli FtsZ-binding cell division protein ZipA SW:ZIPA_ECOLI (P77173) (328 aa) fasta scores: E(): 0%2C 54.4%25 id in 340 aa%2C and to Vibrio cholerae cell division protein ZipA TR:Q9KTD2 (EMBL:AE004178) (291 aa) fasta scores: E(): 4.1e-24%2C 39.9%25 id in 321 aa gene gene2946 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2990 YPO2991 YPO2991 cysZ cysZ 3341014 3341748 + putative membrane protein Similar to Escherichia coli hypothetical protein CysZ SW:CYSZ_ECOLI (P12610) (253 aa) fasta scores: E(): 0%2C79.0%25 id in 238 aa%2C and to Salmonella typhimurium hypothetical protein CysZ SW:CYSZ_SALTY (P12673) (253 aa) fasta scores: E(): 0%2C 76.5%25 id in 238 aa gene gene2947 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2991 YPO2992 YPO2992 cysK cysK 3341905 3342873 + cysteine synthase A Similar to Escherichia coli cysteine synthase A CysK SW:CYSK_ECOLI (P11096) (322 aa) fasta scores: E(): 0%2C 87.6%25 id in 322 aa%2C and to Salmonella typhimurium cysteine synthase A CysK SW:CYSK_SALTY (P12674) (322 aa) fasta scores: E(): 0%2C 87.3%25 id in 322 aa gene gene2948 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2992 YPO2993 YPO2993 hpr hpr 3343372 3343629 + PTS system%2C phosphocarrier protein Probable phosphocarrier protein component of a phosphoenolpyruvate-dependent phosphotransferase system (PTS). Similar to Escherichia coli and Salmonella typhimurium phosphocarrier protein PtsH SW:PTHP_ECOLI (P07006) (85 aa) fasta scores: E(): 4.9e-30%2C 97.6%25 id in 85 aa%2C and to Klebsiella pneumoniae phosphocarrier protein PtsH SW:PTHP_KLEPN (P16481) (85 aa) fasta scores: E(): 8e-30%2C 96.5%25 id in 85 aa gene gene2949 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2993 YPO2994 YPO2994 ptsI ptsI 3343678 3345405 + PTS sytem%2C enzyme I component Probable enzyme I component of a phosphoenolpyruvate-dependent phosphotransferase system (PTS). Similar to Salmonella typhimurium phosphoenolpyruvate-protein phosphotransferase protein PtsI SW:PT1_SALTY (P12654) (575 aa) fasta scores: E(): 0%2C 87.1%25 id in 575 aa%2C and to Escherichia coli phosphoenolpyruvate-protein phosphotransferase protein PtsI SW:PT1_ECOLI (P08839) (575 aa) fasta scores: E(): 0%2C 86.8%25 id in 575 aa gene gene2950 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2994 YPO2995 YPO2995 crr crr 3345454 3345963 + PTS system%2C glucose-specific IIA component Probable glucose-specific IIA component of a phosphoenolpyruvate-dependent phosphotransferase system (PTS). Similar to Salmonella typhimurium PTS system%2Cglucose-specific IIA component Crr SW:PTGA_SALTY (P02908) (168 aa) fasta scores: E(): 0%2C 94.0%25 id in 168 aa%2C and to Escherichia coli PTS system%2C glucose-specific IIA component Crr SW:PTGA_ECOLI (P08837) (168 aa) fasta scores: E(): 0%2C92.9%25 id in 168 aa gene gene2951 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2995 YPO2996 YPO2996 tnp tnp 3346106 3346564 - transposase for the IS1541 insertion element Similar to Salmonella typhimurium and Salmonella typhi transposase for insertion sequence IS200%2C TnpA%2CSW:TNPA_SALTY (Q57334) (152 aa) fasta scores: E(): 0%2C 93.4%25 id in 152 aa. Almost identical to the Yersinia pseudotuberculosis IS1541-like element transposase Tnp TR:Q9X9F5 (EMBL:AJ238014) (152 aa) fasta scores: E(): 0%2C99.3%25 id in 152 aa gene gene2952 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2996 YPO2997 YPO2997 YPO2997 3346834 3348183 - putative two-component system sensor kinase Similar to Escherichia coli sensor protein BaeS SW:BAES_ECOLI (P30847) (467 aa) fasta scores: E(): 6.7e-19%2C26.3%25 id in 480 aa%2C and to Neisseria meningitidis sensor histidine kinase NMB0594 TR:Q9K0K1 (EMBL:AE002415) (468 aa) fasta scores: E(): 2.2e-31%2C 30.2%25 id in 463 aa. Probable histidine kinase protein of a two-component system gene gene2953 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2997 YPO2998 YPO2998 YPO2998 3348209 3348892 - putative two-component system response regulator Similar to Escherichia coli transcriptional regulatory protein OmpR SW:OMPR_ECOLI (P03025) (239 aa) fasta scores: E(): 2.4e-29%2C 41.2%25 id in 226 aa%2C and to Neisseria meningitidis (serogroup A) putative two-component system regulator NMA0798 TR:Q9JRJ9 (EMBL:AL162754) (225 aa) fasta scores: E(): 0%2C 49.8%25 id in 223 aa. Probable response regulator protein of a two-component system gene gene2954 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2998 YPO2999 YPO2999 YPO2999 3349080 3350285 + putative HlyD family secretion protein Similar to Escherichia coli stress-induced multidrug export protein AcrA SW:ACRA_ECOLI (P31223) (397 aa) fasta scores: E(): 7.3e-07%2C 27.3%25 id in 348 aa%2C and to Pseudomonas syringae putative membrane fusion protein MfpA TR:AAG22807 (EMBL:AF297012) (400 aa) fasta scores: E(): 0%2C40.3%25 id in 370 aa gene gene2955 http://www.ncbi.nlm.nih.gov/gene/?term=YPO2999 YPO3000 YPO3000 YPO3000 3350289 3352325 + putative ABC transporter%2C ATP-binding protein Similar to Neisseria meningitidis ABC transporter%2CATP-binding protein NMB0549 TR:Q9K0N7 (EMBL:AE002410) (644 aa) fasta scores: E(): 0%2C 51.6%25 id in 669 aa%2C and to Escherichia coli hypothetical ABC transporter%2C ATP-binding protein YbjZ SW:YBJZ_ECOLI (P75831) (648 aa) fasta scores: E(): 0%2C 52.8%25 id in 669 aa. Similar to YPO1365 (53.8%25 identity in 669 aa overlap) gene gene2956 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3000 YPO3001 YPO3001 YPO3001 3352580 3354226 - putative pyridine nucleotide-disulphide oxidoreductase Similar to Staphylococcus aureus coenzyme A disulfide reductase TR:O52582 (EMBL:AF041467) (438 aa) fasta scores: E(): 0%2C 39.1%25 id in 445 aa%2C and to Vibrio cholerae NADH putative oxidase Vca0644 TR:Q9KLU7 (EMBL:AE004394) (567 aa) fasta scores: E(): 0%2C 49.1%25 id in 566 aa gene gene2957 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3001 YPO3002 YPO3002 YPO3002 3354286 3355746 - putative permease Similar to Bacillus subtilis hypothetical 52.8 kDa protein YhjB TR:O07556 (EMBL:Y14081) (489 aa) fasta scores: E(): 0%2C 50.2%25 id in 480 aa%2C and to Pyrococcus horikoshii hypothetical 53.4 kDa protein Ph1044 TR:O58753 (EMBL:AP000004) (491 aa) fasta scores: E(): 0%2C 30.1%25 id in 481 aa gene gene2958 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3002 YPO3003 YPO3003 YPO3003 3355743 3355940 - putative membrane protein Similar to Bacillus subtilis hypothetical 7.4 kDa protein YhjC TR:O07557 (EMBL:Y14081) (66 aa) fasta scores: E(): 1.2e-09%2C 46.9%25 id in 64 aa gene gene2959 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3003 YPO3004 YPO3004 YPO3004 3356083 3357302 - putative aminopeptidase (pseudogene) Similar to Lactococcus lactis aminopeptidase P PepP TR:AAK04789 (EMBL:AE006302) (352 aa) fasta scores: E(): 8e-15%2C 26.0%25 id in 392 aa%2C and to the previously sequenced Yersinia pestis protein TR:Q9ZC60 (EMBL:AL031866) (405 aa) fasta scores: E(): 0%2C 70.4%25 id in 402 aa. Similar to YPO1950 (71.6%25 identity in 331 aa overlap). There is a possible frameshift mutation following codon 51. The sequence has been checked and is believed to be correct pseudogene gene2960 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3004 YPO3006 YPO3006 YPO3006 3357336 3358517 - putative aminotransferase Similar to Bacillus subtilis putative aminotransferase B PatB SW:PATB_BACSU (Q08432) (387 aa) fasta scores: E(): 0%2C 45.2%25 id in 387 aa%2C and to Escherichia coli MalY protein SW:MALY_ECOLI (P23256) (390 aa) fasta scores: E(): 0%2C 33.6%25 id in 390 aa gene gene2961 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3006 YPO3007 YPO3007 YPO3007 3359114 3360643 + putative membrane protein Similar to Synechocystis sp. hypothetical 45.8 kDa protein Sll0103 SW:Y103_SYNY3 (Q55874) (420 aa) fasta scores: E(): 9e-17%2C 25.6%25 id in 352 aa%2C and to Escherichia coli hypothetical 63.6 kDa protein in elaB-nuoN intergenic region YfbK SW:YFBK_ECOLI (P76481) (575 aa) fasta scores: E(): 1e-11%2C 24.2%25 id in 306 aa%2C and to inter-alpha-trypsin inhibitor heavy chain H2 precursor from higher organisms (~~24.5%25 id in 208 aa) gene gene2962 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3007 YPO3008 YPO3008 YPO3008 3360876 3362420 + putative two-component sensor histidine kinase Similar to Escherichia coli sensor protein RcsC SW:RCSC_ECOLI (P14376) (933 aa) fasta scores: E(): 1.2e-17%2C35.1%25 id in 231 aa%2C and to Streptococcus pneumoniae histidine kinase PnpS TR:Q9X4S9 (EMBL:AF118229) (422 aa) fasta scores: E(): 1.6e-21%2C 34.3%25 id in 251 aa gene gene2963 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3008 YPO3009 YPO3009 YPO3009 3362417 3363124 + putative two-component response regulator Similar to Streptococcus pneumoniae response regulator Rr02 TR:Q9S1K0 (EMBL:AJ006392) (234 aa) fasta scores: E(): 0%2C 41.5%25 id in 234 aa%2C and to to Bacillus subtilis alkaline phosphatase synthesis transcriptional regulatory protein PhoP SW:PHOP_BACSU (P13792) (240 aa) fasta scores: E(): 0%2C 43.7%25 id in 231 aa gene gene2964 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3009 YPO3010 YPO3010 YPO3010 3363505 3364737 - hypothetical protein Weakly similar to the N-terminal and central regions of the previously sequenced Yersinia pestis outer membrane protein YopM or Yop48 SW:YOPM_YERPE (P17778) (367 aa) fasta scores: E(): 0.00012%2C 29.9%25 id in 177 aa%2C and to phage Gifsy-1 leucine-rich repeat protein GogB TR:Q9MBM1 (EMBL:AF254761) (489 aa) fasta scores: E(): 1.4e-19%2C 36.9%25 id in 360 aa gene gene2965 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3010 YPO3011 YPO3011 cysM cysM 3364982 3365860 - cysteine synthase B Similar to Escherichia coli cysteine synthase B CysM SW:CYSM_ECOLI (P16703) (303 aa) fasta scores: E(): 0%2C 76.0%25 id in 292 aa%2C and to Salmonella typhimurium cysteine synthase B CysM SW:CYSM_SALTY (P29848) (303 aa) fasta scores: E(): 0%2C 76.7%25 id in 292 aa. Similar to YPO2992 (43.6%25 identity in 303 aa overlap) gene gene2966 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3011 YPO3012 YPO3012 cysA cysA 3366031 3367122 - sulfate transport ATP-binding protein Similar to Escherichia coli sulfate transport ATP-binding protein CysA SW:CYSA_ECOLI (P16676) (365 aa) fasta scores: E(): 0%2C 77.4%25 id in 367 aa%2C and to Vibrio cholerae sulfate ABC transporter%2C ATP-binding protein Vc0541 TR:Q9KUI0 (EMBL:AE004140) (376 aa) fasta scores: E(): 0%2C 55.8%25 id in 321 aa gene gene2967 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3012 YPO3013 YPO3013 cysW cysW 3367112 3367987 - sulfate transport system permease protein CysW Similar to Escherichia coli sulfate transport system permease protein CysW SW:CYSW_ECOLI (P16702) (291 aa) fasta scores: E(): 0%2C 78.0%25 id in 291 aa%2C and to Vibrio cholerae sulfate ABC transporter%2C permease protein Vc0540 TR:Q9KUI1 (EMBL:AE004140) (287 aa) fasta scores: E(): 0%2C 60.9%25 id in 271 aa gene gene2968 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3013 YPO3014 YPO3014 cysT cysT 3367987 3368820 - sulfate transport system permease protein CysT Similar to Escherichia coli sulfate transport system permease protein CysT SW:CYST_ECOLI (P16701) (277 aa) fasta scores: E(): 0%2C 85.9%25 id in 277 aa%2C and to Vibrio cholerae sulfate ABC transporter%2C permease protein Vc0539 TR:Q9KUI2 (EMBL:AE004140) (283 aa) fasta scores: E(): 0%2C 66.3%25 id in 270 aa gene gene2969 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3014 YPO3015 YPO3015 cysP cysP 3368820 3369857 - thiosulfate-binding protein Similar to Escherichia coli thiosulfate-binding protein precursor CysP SW:CYSP_ECOLI (P16700) (338 aa) fasta scores: E(): 0%2C 74.1%25 id in 343 aa%2C and to Salmonella typhimurium thiosulfate-binding protein precursor CysP SW:CYSP_SALTY (P41031) (338 aa) fasta scores: E(): 0%2C 74.5%25 id in 329 aa. Similar to YPO0079 (47.7%25 identity in 321 aa overlap) gene gene2970 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3015 YPO3016 YPO3016 nanT nanT 3370172 3371704 - putative sugar transporter Similar to Escherichia coli putative sialic acid transporter NanT SW:NANT_ECOLI (P41036) (496 aa) fasta scores: E(): 0%2C 75.2%25 id in 484 aa%2C and to Escherichia coli hypothetical metabolite transport protein in leuX-fecE intergenic region YjhB SW:YJHB_ECOLI (P39352) (405 aa) fasta scores: E(): 0%2C 37.1%25 id in 455 aa gene gene2971 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3016 YPO3017 YPO3017 YPO3017 3372309 3373187 - putative rpiR-family transcriptional regulatory protein Similar to Haemophilus influenzae hypothetical protein HI0143 SW:Y143_HAEIN (P44540) (288 aa) fasta scores: E(): 0%2C 57.9%25 id in 280 aa%2C and to Bacillus halodurans transcriptional regulator BH2675 TR:Q9K9H2 (EMBL:AP001516) (287 aa) fasta scores: E(): 5.5e-22%2C 31.2%25 id in 253 aa gene gene2972 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3017 YPO3018 YPO3018 YPO3018 3373184 3373336 - hypothetical protein doubtful CDS with no significant database matches. Very low %25G+C gene gene2973 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3018 YPO3019 YPO3019 YPO3019 3373376 3373831 - conserved hypothetical protein Similar to Escherichia coli hypothetical protein YhcH SW:YHCH_ECOLI (P45424) (154 aa) fasta scores: E(): 9.6e-22%2C 47.6%25 id in 143 aa%2C and to Haemophilus influenzae hypothetical protein HI0227 SW:YHCH_HAEIN (P44583) (155 aa) fasta scores: E(): 2.1e-21%2C 48.3%25 id in 151 aa gene gene2974 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3019 YPO3020 YPO3020 YPO3020 3373928 3374800 - putative sugar kinase Similar to Streptomyces coelicolor glucokinase SW:GLK_STRCO (P40184) (317 aa) fasta scores: E(): 1.4e-18%2C31.6%25 id in 316 aa%2C and to Haemophilus influenzae hypothetical protein Hi0144 SW:YHCI_HAEIN (P44541) (300 aa) fasta scores: E(): 0%2C 52.4%25 id in 288 aa%2C and to Escherichia coli hypothetical 29.6 kDa protein in gltF-nanT intergenic region YhcI SW:YHCI_ECOLI (P45425) (291 aa) fasta scores: E(): 0%2C 51.2%25 id in 285 aa gene gene2975 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3020 YPO3021 YPO3021 YPO3021 3375069 3376197 + putative outer membrane protein (pseudogene) Similar (after the first 34 N-terminal aa) to the previously sequenced Yersinia pestis outer membrane protein YopM or Yop48 SW:YOPM_YERPE (P17778) (367 aa) fasta scores: E(): 3.9e-25%2C 37.5%25 id in 339 aa%2C and to Yersinia enterocolitica YopM protein TR:P74988 (EMBL:AF102990) (367 aa) fasta scores: E(): 8.2e-26%2C 37.2%25 id in 339 aa. There is a possible frameshift following codon 188. The frameshift occurs at a homopolymeric tract of 8C. The sequence has been checked and is believed to be correct pseudogene gene2976 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3021 YPO3023 YPO3023 YPO3023 3376403 3377104 + conserved hypothetical protein Similar to Escherichia coli hypothetical 24.1 kDa protein in gltF-nanT intergenic region YhcJ SW:YHCJ_ECOLI (P45426) (229 aa) fasta scores: E(): 0%2C 59.7%25 id in 226 aa%2Cand to Pasteurella multocida conserved hypothetical protein YhcJ TR:Q9L6B4 (EMBL:AF237924) (228 aa) fasta scores: E(): 0%2C 58.2%25 id in 225 aa. It is also similar to the N-terminal region of Streptomyces thermoviolaceus beta-N-acetylglucosaminidase precursor NagA TR:O82840 (EMBL:AB008771) (632 aa) fasta scores: E(): 0.86%2C 25.1%25 id in 207 aa gene gene2977 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3023 YPO3024 YPO3024 nanA nanA 3377167 3378060 + probable N-acetylneuraminate lyase Similar to Escherichia coli N-acetylneuraminate lyase subunit NanA or Npl SW:NPL_ECOLI (P06995) (296 aa) fasta scores: E(): 1.7e-16%2C 29.1%25 id in 265 aa%2C and to Vibrio cholerae N-acetylneuraminate lyase%2C putative VC1776 TR:Q9KR67 (EMBL:AE004255) (298 aa) fasta scores: E(): 0%2C75.1%25 id in 293 aa gene gene2978 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3024 YPO3025 YPO3025 YPO3025 3378158 3379057 - conserved hypothetical protein Similar to Escherichia coli hypothetical protein B2431 TR:P76536 (EMBL:AE000330) (308 aa) fasta scores: E(): 0%2C 66.7%25 id in 300 aa%2C and to Pasteurella multocida hypothetical protein PM0455 TR:AAK02539 (EMBL:AE006081) (296 aa) fasta scores: E(): 0%2C 65.0%25 id in 297 aa gene gene2979 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3025 YPO3026 YPO3026 yfeY yfeY 3379235 3379846 - putative lipoprotein Similar to Escherichia coli hypothetical 20.9 kDa protein in ucpA-amiA intergenic region precursor YfeY SW:YFEY_ECOLI (P76537) (191 aa) fasta scores: E(): 0%2C 56.5%25 id in 193 aa%2C and to Aeromonas hydrophila blr regulon signal sensor BlrB TR:Q9KGR6 (EMBL:AJ276632) (473 aa) fasta scores: E(): 0.65%2C 28.8%25 id in 163 aa gene gene2980 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3026 YPO3027 YPO3027 ygiW ygiW 3380205 3380618 + putative exported protein Similar to Escherichia coli protein YgiW precursor SW:YGIW_ECOLI (P52083) (130 aa) fasta scores: E(): 3.2e-24%2C52.9%25 id in 136 aa%2C and to Bacteriophage 933W%2C and Bacteriophage VT2-Sa hypothetical 12.4 kDa protein l0136 TR:Q9XJM3 (EMBL:AF125520) (114 aa) fasta scores: E(): 7.5e-16%2C 51.0%25 id in 96 aa gene gene2981 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3027 YPO3028 YPO3028 YPO3028 3381105 3383384 + putative autotransporter Similar to Escherichia coli TibA TR:Q9XD84 (EMBL:AF109215) (989 aa) fasta scores: E(): 0%2C 32.8%25 id in 798 aa%2C and to Yersinia pestis putative autotransporter protein YapC TR:CAC14222 (EMBL:AJ277626) (638 aa) fasta scores: E(): 0%2C 38.9%25 id in 455 aa gene gene2982 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3028 YPO3029 YPO3029 YPO3029 3383476 3383892 - putative membrane protein Similar to the internal regions of Methanococcus jannaschii hypothetical protein Mj0456 mj0456 SW:Y456_METJA (Q57898) (352 aa) fasta scores: E(): 0.48%2C 29.1%25 id in 117 aa%2C and to Bacillus halodurans Bh2100 protein Bh2100 TR:Q9KB35 (EMBL:AP001514) (366 aa) fasta scores: E(): 0.42%2C28.8%25 id in 125 aa gene gene2983 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3029 YPO3030 YPO3030 YPO3030 3383998 3384183 + hypothetical protein no significant database hits gene gene2984 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3030 YPO3031 YPO3031 YPO3031 3384365 3384790 - putative acetyltransferase Similar to Campylobacter jejuni streptothricin acetyltransferase homolog Sat TR:Q9RGZ9 (EMBL:AF093219) (148 aa) fasta scores: E(): 1.5e-08%2C 33.6%25 id in 116 aa%2Cand to Escherichia coli hypothetical protein TR:P76539 (EMBL:AE000330) (178 aa) fasta scores: E(): 0%2C 78.0%25 id in 141 aa gene gene2985 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3031 YPO3032 YPO3032 hemF hemF 3385073 3386002 + coproporphyrinogen III oxidase%2C aerobic HemF Similar to Escherichia coli coproporphyrinogen III oxidase%2C aerobic HemF SW:HEM6_ECOLI (P36553) (299 aa) fasta scores: E(): 0%2C 75.6%25 id in 299 aa%2C and to Salmonella typhimurium coproporphyrinogen III oxidase%2C aerobic HemF SW:HEM6_SALTY (P33771) (299 aa) fasta scores: E(): 0%2C 75.3%25 id in 299 aa gene gene2986 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3032 YPO3033 YPO3033 YPO3033 3386002 3386460 + conserved hypothetical protein Similar to Escherichia coli hypothetical protein YaiI SW:YAII_ECOLI (P52088) (152 aa) fasta scores: E(): 0%2C74.2%25 id in 151 aa%2C and to Vibrio cholerae hypothetical protein VC0881 TR:Q9KTM1 (EMBL:AE004172) (149 aa) fasta scores: E(): 0%2C 67.1%25 id in 146 aa gene gene2987 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3033 YPO3034 YPO3034 maeB maeB 3386611 3388896 - NADP-dependent malic enzyme Similar to Escherichia coli NADP-dependent malic enzyme MaeB SW:MAO2_ECOLI (P76558) (759 aa) fasta scores: E(): 0%2C 83.9%25 id in 758 aa%2C and to Haemophilus influenzae NADP-dependent malic enzyme MaeB or Hi1245 SW:MAO2_HAEIN (P43837) (756 aa) fasta scores: E(): 0%2C 68.9%25 id in 756 aa gene gene2988 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3034 YPO3035 YPO3035 YPO3035 3389092 3389688 - conserved hypothetical protein Similar to Escherichia coli hypothetical protein YffH SW:YFFH_ECOLI (P37128) (191 aa) fasta scores: E(): 0%2C61.1%25 id in 185 aa%2C and to Streptomyces coelicolor hypothetical protein SCF85.08c TR:Q9S2D3 (EMBL:AL110470) (233 aa) fasta scores: E(): 6.1e-32%2C 51.6%25 id in 184 aa gene gene2989 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3035 YPO3036 YPO3036 napC napC 3389872 3390474 - cytochrome C-type protein NapC Similar to Escherichia coli cytochrome C-type protein NapC SW:NAPC_ECOLI (P33932) (200 aa) fasta scores: E(): 0%2C 75.5%25 id in 200 aa%2C and to Haemophilus influenzae cytochrome C-type protein NapC or hi0348 SW:NAPC_HAEIN (P44655) (200 aa) fasta scores: E(): 0%2C 61.8%25 id in 199 aa gene gene2990 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3036 YPO3037 YPO3037 napB napB 3390499 3390954 - cytochrome C-type protein NapB precursor Similar to Escherichia coli cytochrome C-type protein NapB precursor SW:NAPB_ECOLI (P33933) (149 aa) fasta scores: E(): 0%2C 66.7%25 id in 147 aa%2C and to Haemophilus influenzae cytochrome C-type protein NapB or Hi0347 SW:NAPB_HAEIN (P44654) (150 aa) fasta scores: E(): 3.8e-24%2C 50.0%25 id in 152 aa gene gene2991 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3037 YPO3038 YPO3038 napA napA 3391049 3393541 - periplasmic nitrate reductase precursor Similar to Escherichia coli periplasmic nitrate reductase NapA precursor SW:NAPA_ECOLI (P33937) (828 aa) fasta scores: E(): 0%2C 82.6%25 id in 828 aa%2C and to Vibrio cholerae periplasmic nitrate reductase Vca0678 TR:Q9KLR4 (EMBL:AE004397) (829 aa) fasta scores: E(): 0%2C 70.0%25 id in 830 aa gene gene2992 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3038 YPO3039 YPO3039 napD napD 3393538 3393804 - conserved hypothetical protein Similar to Paracoccus denitrificans periplasmic nitrate reductase-associated protein NapD SW:NAPD_PARDT (Q56349) (112 aa) fasta scores: E(): 0.027%2C 27.4%25 id in 73 aa%2C and to Escherichia coli hypothetical protein NapD SW:NAPD_ECOLI (P33938) (87 aa) fasta scores: E(): 3.4e-16%2C55.4%25 id in 83 aa gene gene2993 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3039 YPO3040 YPO3040 napF napF 3393794 3394297 - ferredoxin-type protein NapF Similar to Escherichia coli ferredoxin-type protein NapF SW:NAPF_ECOLI (P33939) (164 aa) fasta scores: E(): 0%2C52.9%25 id in 157 aa%2C and to Vibrio cholerae iron-sulfur cluster-binding protein NapF Vca0676 TR:Q9KLR6 (EMBL:AE004397) (168 aa) fasta scores: E(): 3.7e-27%2C 40.9%25 id in 164 aa gene gene2994 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3040 YPO3041 YPO3041 narP narP 3395130 3395759 + nitrate/nitrite response regulator protein NarP Similar to Escherichia coli nitrate/nitrite response regulator protein NarP SW:NARP_ECOLI (P31802) (215 aa) fasta scores: E(): 0%2C 67.6%25 id in 204 aa%2C and to Pasteurella multocida NarP TR:AAK03894 (EMBL:AE006218) (209 aa) fasta scores: E(): 0%2C 62.3%25 id in 207 aa gene gene2995 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3041 YPO3042 YPO3042 YPO3042 3395772 3396050 - conserved hypothetical protein Similar to Vibrio cholerae hypothetical protein VC2149 TR:Q9KQ55 (EMBL:AE004287) (95 aa) fasta scores: E(): 1e-21%2C 58.2%25 id in 91 aa%2C and to Pseudomonas aeruginosa hypothetical protein PA2029 TR:AAG05417 (EMBL:AE004629) (99 aa) fasta scores: E(): 1.2e-10%2C 43.7%25 id in 87 aa gene gene2996 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3042 YPO3043 YPO3043 YPO3043 3396465 3399596 + multidrug efflux protein Similar to Escherichia coli acriflavin resistance protein D AcrD SW:ACRD_ECOLI (P24177) (1037 aa) fasta scores: E(): 0%2C 79.5%25 id in 1036 aa%2C and to Escherichia coli acriflavin resistance protein B AcrB SW:ACRB_ECOLI (P31224) (1049 aa) fasta scores: E(): 0%2C 68.0%25 id in 1033 aa%2C and to Escherichia coli acriflavin resistance protein F AcrF or EnvD SW:ACRF_ECOLI (P24181) (1034 aa) fasta scores: E(): 0%2C 65.0%25 id in 1034 aa. Similar to YPO3133 (66.5%25 identity in 1032 aa overlap) and YPO3482 (58.4%25 identity in 1035 aa overlap) gene gene2997 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3043 YPO3044 YPO3044 YPO3044 3399827 3400411 + hypothetical protein Weakly similar to internal regions of Myrothecium roridum trichodiene synthase Tri5 SW:TRI5_MYRRO (O13489) (385 aa) fasta scores: E(): 2.1%2C 26.0%25 id in 150 aa%2C and to Arabidopsis thaliana hypothetical protein TR:BAB09824 (EMBL:AB006708) (277 aa) fasta scores: E(): 0.99%2C 32.5%25 id in 120 aa gene gene2998 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3044 YPO3045 YPO3045 ybcI ybcI 3400700 3401248 + putative membrane protein Similar to Escherichia coli hypothetical 19.5 kDa protein in cysS-folD intergenic region YbcI SW:YBCI_ECOLI (P45570) (173 aa) fasta scores: E(): 0%2C 72.4%25 id in 174 aa%2Cand to Pseudomonas aeruginosa hypothetical protein PA4962 TR:AAG08347 (EMBL:AE004909) (178 aa) fasta scores: E(): 1.2e-29%2C 48.0%25 id in 177 aa gene gene2999 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3045 YPO3046 YPO3046 YPO3046 3402002 3403177 - putative sulfatase modifier protein Similar to Bacteroides thetaiotaomicron chondro-6-sulfatase regulatory protein ChuR SW:CHUR_BACTN (Q02550) (401 aa) fasta scores: E(): 0%2C 41.7%25 id in 386 aa%2Cand to Escherichia coli hypothetical protein YdeM SW:YDEM_ECOLI (P76134) (385 aa) fasta scores: E(): 0%2C 65.8%25 id in 383 aa%2C and to Klebsiella pneumoniae iron-sulfur modifier protein AtsB TR:Q9L4Y5 (EMBL:AF262989) (395 aa) fasta scores: E(): 1.1e-28%2C 34.5%25 id in 365 aa gene gene3000 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3046 YPO3047 YPO3047 ydeN ydeN 3403235 3404908 - putative sulfatase Similar to Escherichia coli putative sulfatase YdeN precursor SW:YDEN_ECOLI (P77318) (560 aa) fasta scores: E(): 0%2C 80.0%25 id in 556 aa gene gene3001 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3047 YPO3048 YPO3048 YPO3048 3405386 3406456 - probable ABC-transporter%2C ATP-binding protein Similar to Streptomyces coelicolor ABC-transporter ATP-binding protein Sc10a5.28C TR:O54119 (EMBL:AL021529) (361 aa) fasta scores: E(): 0%2C 42.9%25 id in 361 aa%2C and to Deinococcus radiodurans spermidine/putrescine ABC transporter%2C ATP-binding protein Dr1302 TR:Q9RUT0 (EMBL:AE001977) (362 aa) fasta scores: E(): 0%2C 42.2%25 id in 327 aa gene gene3002 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3048 YPO3049 YPO3049 YPO3049 3406449 3408218 - putative binding protein-dependent transport system%2C inner-membrane component Similar to Streptomyces coelicolor putative membrane protein sc10a5.29C TR:O54120 (EMBL:AL021529) (589 aa) fasta scores: E(): 0%2C 30.8%25 id in 574 aa gene gene3003 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3049 YPO3050 YPO3050 YPO3050 3408313 3409401 - putative exported protein Similar to Xylella fastidiosa periplasmic iron-binding protein Xf0324 TR:Q9PGH6 (EMBL:AE003885) (323 aa) fasta scores: E(): 1.2e-30%2C 32.5%25 id in 314 aa%2C and to Pseudomonas aeruginosa hypothetical protein Pa3250 TR:AAG06638 (EMBL:AE004747) (352 aa) fasta scores: E(): 2e-08%2C 26.0%25 id in 342 aa gene gene3004 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3050 YPO3051 YPO3051 YPO3051 3409685 3410185 + conserved hypothetical protein Similar to Bacillus halodurans hypothetical protein BH0479 TR:Q9KFK0 (EMBL:AP001508) (164 aa) fasta scores: E(): 1.5e-15%2C 37.2%25 id in 148 aa gene gene3005 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3051 YPO3052 YPO3052 YPO3052 3410345 3410743 + conserved hypothetical protein Similar to Escherichia coli protein YffB SW:YFFB_ECOLI (P24178) (118 aa) fasta scores: E(): 1.1e-29%2C69.0%25 id in 113 aa%2C and to Vibrio cholerae hypothetical protein VC2150 TR:Q9KQ54 (EMBL:AE004287) (131 aa) fasta scores: E(): 5.9e-22%2C 51.3%25 id in 115 aa gene gene3006 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3052 YPO3053 YPO3053 dapE dapE 3410745 3411872 + succinyl-diaminopimelate desuccinylase Similar to Escherichia coli succinyl-diaminopimelate desuccinylase dape or msgB SW:DAPE_ECOLI (P24176) (375 aa) fasta scores: E(): 0%2C 81.9%25 id in 375 aa%2C and to Vibrio cholerae succinyl-diaminopimelate desuccinylase vc2152 TR:Q9KQ52 (EMBL:AE004287) (377 aa) fasta scores: E(): 0%2C69.1%25 id in 372 aa gene gene3007 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3053 YPO3054 YPO3054 YPO3054 3411869 3412546 + putative carboxypeptidase Similar to Vibrio cholerae D%2CD-carboxypeptidase-related protein VC2153 TR:Q9KQ51 (EMBL:AE004287) (249 aa) fasta scores: E(): 0%2C 45.7%25 id in 221 aa%2C and to Haemophilus influenzae hypothetical protein HI0100 SW:Y100_HAEIN (P43941) (131 aa) fasta scores: E(): 8.8e-23%2C 47.9%25 id in 121 aa%2C and to Haemophilus influenzae hypothetical protein HI0101 hi0101 SW:Y101_HAEIN (P43942) (146 aa) fasta scores: E(): 3.4e-19%2C 58.3%25 id in 103 aa gene gene3008 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3054 YPO3055 YPO3055 YPO3055 3412614 3412808 + putative membrane protein Similar to Escherichia coli hypothetical protein TR:P77259 (EMBL:D90875) (66 aa) fasta scores: E(): 3e-18%2C66.7%25 id in 66 aa gene gene3009 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3055 YPO3056 YPO3056 YPO3056 3413013 3415112 - putative acetyltransferase Similar to Escherichia coli hypothetical protein YpfI SW:YPFI_ECOLI (P76562) (671 aa) fasta scores: E(): 0%2C52.4%25 id in 664 aa gene gene3010 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3056 YPO3057 YPO3057 yeaL yeaL 3415114 3415566 - putative membrane protein Similar to Escherichia coli hypothetical 15.3 kDa protein in gapA-rnd intergenic region YeaL SW:YEAL_ECOLI (P76240) (148 aa) fasta scores: E(): 0%2C 71.2%25 id in 146 aa%2Cand to Haemophilus influenzae hypothetical protein Hi1074 SW:YEAL_HAEIN (P44110) (150 aa) fasta scores: E(): 1.7e-24%2C51.4%25 id in 146 aa gene gene3011 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3057 YPO3058 YPO3058 YPO3058 3415660 3416526 - putative membrane protein Similar to Escherichia coli hypothetical protein TR:P76563 (EMBL:AE000334) (287 aa) fasta scores: E(): 0%2C74.7%25 id in 289 aa%2C and to Pseudomonas aeruginosa hypothetical protein Pa4717 TR:AAG08103 (EMBL:AE004885) (297 aa) fasta scores: E(): 0%2C 52.2%25 id in 299 aa gene gene3012 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3058 YPO3059 YPO3059 purC purC 3416745 3417458 - phosphoribosylaminoimidazole-succinocarboxamide synthase Similar to Escherichia coli phosphoribosylaminoimidazole-succinocarboxamide synthase PurC SW:PUR7_ECOLI (P21155) (237 aa) fasta scores: E(): 0%2C86.9%25 id in 237 aa%2C and to Pseudomonas aeruginosa phosphoribosylaminoimidazole-succinocarboxamide synthase Purc or Pa1013 TR:AAG04402 (EMBL:AE004533) (236 aa) fasta scores: E(): 0%2C 72.5%25 id in 236 aa gene gene3013 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3059 YPO3060 YPO3060 tnp tnp 3417606 3418064 - transposase for the IS1541 insertion element Similar to Salmonella typhimurium%2C and Salmonella typhi transposase for insertion sequence IS200 TnpA SW:T200_SALTY (Q57334) (152 aa) fasta scores: E(): 0%2C 94.1%25 id in 152 aa. Identical to the Yersinia pseudotuberculosis IS1541-like element transposase Tnp TR:Q9X9F5 (EMBL:AJ238014) (152 aa) fasta scores: E(): 0%2C 100.0%25 id in 152 aa gene gene3014 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3060 YPO3061 YPO3061 dapX dapX 3418239 3419297 - lipoprotein Similar to Escherichia coli lipoprotein-34 precursor NlpB or DapX SW:NLPB_ECOLI (P21167) (344 aa) fasta scores: E(): 0%2C 62.9%25 id in 345 aa gene gene3015 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3061 YPO3062 YPO3062 dapA dapA 3419315 3420196 - dihydrodipicolinate synthase Similar to Escherichia coli dihydrodipicolinate synthase DapA SW:DAPA_ECOLI (P05640) (292 aa) fasta scores: E(): 0%2C 78.8%25 id in 293 aa gene gene3016 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3062 YPO3063 YPO3063 gcvR gcvR 3420361 3420930 + glycine cleavage system transcriptional repressor Similar to Escherichia coli glycine cleavage system transcriptional repressor GcvR SW:GCVR_ECOLI (P23483) (189 aa) fasta scores: E(): 0%2C 75.7%25 id in 181 aa gene gene3017 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3063 YPO3064 YPO3064 bcp bcp 3420930 3421403 + bacterioferritin comigratory protein Similar to Escherichia coli bacterioferritin comigratory protein Bcp SW:BCP_ECOLI (P23480) (156 aa) fasta scores: E(): 0%2C 86.5%25 id in 156 aa%2C and to Vibrio cholerae bacterioferritin comigratory protein VC2160 TR:Q9KQ44 (EMBL:AE004288) (155 aa) fasta scores: E(): 0%2C63.2%25 id in 152 aa gene gene3018 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3064 YPO3065 YPO3065 YPO3065 3421647 3422066 - putative exported protein no significant database matches gene gene3019 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3065 YPO3066 YPO3066 YPO3066 3422070 3422765 - hypothetical protein no significant database hits. Similar to YPO1619 (53%25 identity in 166 aa overlap) gene gene3020 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3066 YPO3067 YPO3067 YPO3067 3423103 3423276 + hypothetical protein no significant database hits gene gene3021 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3067 YPO3068 YPO3068 perM perM 3423365 3424429 - putative membrane protein Similar to Escherichia coli putative Permease PerM SW:PERM_ECOLI (P77406) (353 aa) fasta scores: E(): 0%2C 78.1%25 id in 347 aa%2C and to Vibrio cholerae permease PerM%2Cputative Vc2162 TR:Q9KQ42 (EMBL:AE004288) (354 aa) fasta scores: E(): 0%2C 59.0%25 id in 346 aa gene gene3022 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3068 YPO3069 YPO3069 YPO3069 3424784 3426244 + putative exported protein Similar to Escherichia coli hypothetical protein TR:P76568 (EMBL:AE000336) (487 aa) fasta scores: E(): 0%2C70.9%25 id in 475 aa%2C and to Vibrio cholerae hypothetical protein Vc2164 TR:Q9KQ40 (EMBL:AE004288) (484 aa) fasta scores: E(): 0%2C 47.9%25 id in 455 aa gene gene3023 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3069 YPO3070 YPO3070 yfgD yfgD 3426351 3426707 + putative arsenate reductase Similar to Yersinia enterocolitica arsenate reductase ArsC SW:ARSC_YEREN (P74984) (141 aa) fasta scores: E(): 4.3e-15%2C 43.6%25 id in 117 aa%2C and to Escherichia coli protein YfgD SW:YFGD_ECOLI (P76569) (119 aa) fasta scores: E(): 1.4e-28%2C 67.2%25 id in 116 aa%2C and to Escherichia coli arsenate reductase ArsC SW:ARC2_ECOLI (P52147) (141 aa) fasta scores: E(): 5.7e-17%2C 47.9%25 id in 117 aa gene gene3024 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3070 YPO3071 YPO3071 YPO3071 3426919 3427638 - conserved hypothetical protein Similar to Escherichia coli hypothetical protein YfgE SW:YFGE_ECOLI (P76570) (248 aa) fasta scores: E(): 0%2C85.8%25 id in 239 aa%2C and to Pseudomonas aeruginosa hypothetical protein PA0947 TR:AAG04336 (EMBL:AE004529) (234 aa) fasta scores: E(): 0%2C 48.1%25 id in 231 aa gene gene3025 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3071 YPO3072 YPO3072 tnp tnp 3427814 3428272 - transposase for the IS1541 insertion element Similar to Salmonella typhimurium and Salmonella typhi transposase for insertion sequence IS200%2C TnpA%2CSW:TNPA_SALTY (Q57334) (152 aa) fasta scores: E(): 0%2C 93.4%25 id in 152 aa. Almost identical to the Yersinia pseudotuberculosis IS1541-like element transposase Tnp TR:Q9X9F5 (EMBL:AJ238014) (152 aa) fasta scores: E(): 0%2C99.3%25 id in 152 aa gene gene3026 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3072 YPO3073 YPO3073 cysS cysS 3428619 3430004 - cysteinyl-tRNA synthetase Similar to Escherichia coli cysteinyl-tRNA synthetase CysS SW:SYC_ECOLI (P21888) (461 aa) fasta scores: E(): 0%2C 83.9%25 id in 461 aa%2C and to Vibrio cholerae cysteinyl-tRNA synthetase CysS or Vc1848 SW:SYC_VIBCH (Q9KQZ9) (459 aa) fasta scores: E(): 0%2C 75.5%25 id in 461 aa gene gene3027 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3073 YPO3074 YPO3074 ppiB ppiB 3430215 3430709 + peptidyl-prolyl cis-trans isomerase B Similar to Escherichia coli peptidyl-prolyl cis-trans isomerase B PpiB SW:PPIB_ECOLI (P23869) (164 aa) fasta scores: E(): 0%2C 84.8%25 id in 164 aa%2C and to Haemophilus influenzae peptidyl-prolyl cis-trans isomerase B Ppib or hi0079 SW:PPIB_HAEIN (P44499) (169 aa) fasta scores: E(): 0%2C 70.8%25 id in 168 aa. Similar to YPO0167 (50.9%25 identity in 161 aa overlap) gene gene3028 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3074 YPO3075 YPO3075 YPO3075 3430720 3431442 + conserved hypothetical protein Similar to Escherichia coli hypothetical protein YbbF SW:YBBF_ECOLI (P43341) (240 aa) fasta scores: E(): 0%2C70.0%25 id in 240 aa%2C and to Vibrio cholerae hypothetical protein VC1850 TR:Q9KQZ7 (EMBL:AE004260) (242 aa) fasta scores: E(): 0%2C 52.4%25 id in 227 aa gene gene3029 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3075 YPO3076 YPO3076 purE purE 3431738 3432262 + phosphoribosylaminoimidazole carboxylase catalytic subunit PurE Similar to Escherichia coli phosphoribosylaminoimidazole carboxylase catalytic subunit PurE SW:PUR6_ECOLI (P09028) (168 aa) fasta scores: E(): 0%2C81.0%25 id in 168 aa%2C and to Haemophilus influenzae phosphoribosylaminoimidazole carboxylase catalytic subunit PurE or Hi1615 SW:PUR6_HAEIN (P43849) (164 aa) fasta scores: E(): 0%2C 77.2%25 id in 158 aa gene gene3030 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3076 YPO3077 YPO3077 purK purK 3432259 3433323 + phosphoribosylaminoimidazole carboxylase ATPase subunit PurK Similar to Escherichia coli phosphoribosylaminoimidazole carboxylase ATPase subunit PurK SW:PURK_ECOLI (P09029) (355 aa) fasta scores: E(): 0%2C77.1%25 id in 354 aa%2C and to Haemophilus influenzae phosphoribosylaminoimidazole carboxylase ATPase subunit PurK or Hi1616 SW:PURK_HAEIN (P43850) (362 aa) fasta scores: E(): 0%2C 57.9%25 id in 354 aa gene gene3031 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3077 YPO3078 YPO3078 ybbP ybbP 3433367 3435796 - putative permease Similar to Escherichia coli hypothetical 89.3 kDa protein in tesA-rhsD intergenic region YbbP SW:YBBP_ECOLI (P77504) (804 aa) fasta scores: E(): 0%2C 68.7%25 id in 808 aa%2Cand to Vibrio cholerae hypothetical protein Vca0781 TR:Q9KLG3 (EMBL:AE004406) (815 aa) fasta scores: E(): 0%2C36.5%25 id in 805 aa gene gene3032 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3078 YPO3079 YPO3079 ybbA ybbA 3435793 3436479 - putative ABC transporter ATP-binding protein Similar to Escherichia coli hypothetical ABC transporter ATP-binding protein YbbA SW:YBBA_ECOLI (P31219) (228 aa) fasta scores: E(): 0%2C 78.9%25 id in 228 aa%2C and to Vibrio cholerae ABC transporter%2C ATP-binding protein Vca0782 TR:Q9KLG2 (EMBL:AE004406) (225 aa) fasta scores: E(): 0%2C 53.2%25 id in 222 aa gene gene3033 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3079 YPO3080 YPO3080 apeA apeA 3436447 3437085 + putative acyl-CoA thioesterase Similar to Escherichia coli acyl-CoA thioesterase I precursor TesA or ApeA or PldC SW:TESA_ECOLI (P29679) (208 aa) fasta scores: E(): 0%2C 71.2%25 id in 208 aa%2C and to Vibrio cholerae arylesterase vca0783 TR:Q9KLG1 (EMBL:AE004406) (215 aa) fasta scores: E(): 0%2C 62.2%25 id in 193 aa gene gene3034 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3080 YPO3081 YPO3081 ybbO ybbO 3437472 3438248 + probable short-chain dehydrogenase Similar to Escherichia coli hypothetical oxidoreductase in ushA-tesA intergenic region YbbO SW:YBBO_ECOLI (P77388) (269 aa) fasta scores: E(): 0%2C 68.4%25 id in 256 aa%2C and to Vibrio cholerae oxidoreductase%2Cshort-chain dehydrogenase/reductase family Vc0979 TR:Q9KTC3 (EMBL:AE004179) (275 aa) fasta scores: E(): 0%2C 46.9%25 id in 271 aa gene gene3035 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3081 YPO3082 YPO3082 ybbN ybbN 3438325 3439194 + putative thioredoxin Similar to Escherichia coli hypothetical 33.1 kDa protein in ushA-tesA intergenic region YbbN SW:YBBN_ECOLI (P77395) (296 aa) fasta scores: E(): 0%2C 71.6%25 id in 289 aa%2Cand to Vibrio cholerae hypothetical protein Vc0977 TR:Q9KTC5 (EMBL:AE004179) (306 aa) fasta scores: E(): 0%2C40.8%25 id in 292 aa gene gene3036 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3082 YPO3083 YPO3083 YPO3083 3439389 3440303 + conserved hypothetical protein Similar to Escherichia coli hypothetical protein YbbK SW:YBBK_ECOLI (P77367) (305 aa) fasta scores: E(): 0%2C83.8%25 id in 302 aa%2C and to Vibrio cholerae hypothetical protein VC0976 TR:Q9KTC6 (EMBL:AE004179) (306 aa) fasta scores: E(): 0%2C 71.1%25 id in 298 aa gene gene3037 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3083 YPO3084 YPO3084 ybbJ ybbJ 3440306 3440755 + putative membrane protein Similar to Escherichia coli hypothetical 16.8 kDa protein in ushA-tesA intergenic region YbbJ SW:YBBJ_ECOLI (P75709) (151 aa) fasta scores: E(): 0%2C 58.0%25 id in 150 aa%2Cand to Vibrio cholerae hypothetical protein Vc0975 TR:Q9KTC7 (EMBL:AE004179) (189 aa) fasta scores: E(): 4e-19%2C 41.0%25 id in 139 aa gene gene3038 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3084 YPO3085 YPO3085 cueR cueR 3440864 3441283 - putative regulatory protein Similar to Escherichia coli transcriptional regulator CueR TR:AAK06655 (EMBL:AF318185) (135 aa) fasta scores: E(): 0%2C 72.5%25 id in 131 aa%2C and to Vibrio cholerae transcriptional regulator%2C merR family VC0974 TR:Q9KTC8 (EMBL:AE004179) (139 aa) fasta scores: E(): 2.3e-24%2C 46.3%25 id in 136 aa gene gene3039 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3085 YPO3086 YPO3086 ybaR ybaR 3441490 3444375 + putative cation-transporting ATPase Similar to Synechococcus sp. cation-transporting ATPase PacS SW:ATCS_SYNP7 (P37279) (747 aa) fasta scores: E(): 0%2C 44.5%25 id in 749 aa%2C and to Escherichia coli probable copper-transporting ATPase YbaR SW:ATCU_ECOLI (Q59385) (834 aa) fasta scores: E(): 0%2C 66.7%25 id in 891 aa gene gene3040 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3086 YPO3087 YPO3087 YPO3087 3444896 3445705 + conserved hypothetical protein Similar to Escherichia coli hypothetical protein YbaP SW:YBAP_ECOLI (P77301) (264 aa) fasta scores: E(): 0%2C56.6%25 id in 265 aa%2C and to Vibrio cholerae hypothetical protein VC2220 TR:Q9KPZ2 (EMBL:AE004294) (298 aa) fasta scores: E(): 5.4e-20%2C 30.5%25 id in 269 aa gene gene3041 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3087 YPO3088 YPO3088 YPO3088 3445969 3446448 + conserved hypothetical protein Similar to Escherichia coli protein YbaK SW:YBAK_ECOLI (P37175) (159 aa) fasta scores: E(): 0%2C 77.4%25 id in 159 aa%2C and to Salmonella typhimurium protein YbaK SW:YBAK_SALTY (P37174) (159 aa) fasta scores: E(): 0%2C 76.1%25 id in 159 aa gene gene3042 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3088 YPO3089 YPO3089 YPO3089 3446740 3447024 + hypothetical protein no significant database hits gene gene3043 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3089 YPO3090 YPO3090 ushA ushA 3447128 3448783 - UDP-sugar hydrolase (pseudogene) Similar to Escherichia coli UDP-sugar hydrolase (5'-nucleotidase) UshA SW:USHA_ECOLI (P07024) (550 aa) fasta scores: E(): 0%2C 74.7%25 id in 537 aa%2C and to Enterobacter aerogenes UDP-sugar hydrolase precursor UshA TR:Q9RQT7 (EMBL:AF068226) (550 aa) fasta scores: E(): 0%2C74.3%25 id in 537 aa. There are 2 possible frameshifts following codons 84 and 322. The sequence has been checked and is believed to be correct pseudogene gene3044 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3090 YPO3093 YPO3093 fsr fsr 3449065 3450279 + putative membrane efflux protein Similar to Yersinia enterocolitica efflux pump RosA TR:Q56877 (EMBL:U46859) (410 aa) fasta scores: E(): 0%2C84.7%25 id in 412 aa%2C and to Escherichia coli fosmidomycin resistance protein Fsr SW:FSR_ECOLI (P52067) (406 aa) fasta scores: E(): 0%2C 76.2%25 id in 395 aa gene gene3045 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3093 YPO3094 YPO3094 rosB rosB 3450514 3452205 + putative potassium antiporter Similar to Escherichia coli glutathione-regulated potassium-efflux system protein KefC or TrkC SW:KEFC_ECOLI (P03819) (620 aa) fasta scores: E(): 1.2e-26%2C 28.2%25 id in 550 aa%2C and to Yersinia enterocolitica potassium antiporter RosB TR:Q56876 (EMBL:U46859) (563 aa) fasta scores: E(): 0%2C87.9%25 id in 563 aa%2C and to Escherichia coli hypothetical 59.4 kDa protein in gsk-fsr intergenic region YbaL SW:YBAL_ECOLI (P39830) (558 aa) fasta scores: E(): 0%2C 79.7%25 id in 548 aa gene gene3046 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3094 YPO3095 YPO3095 gsk gsk 3452302 3453606 - inosine-guanosine kinase Similar to Escherichia coli inosine-guanosine kinase Gsk SW:INGK_ECOLI (P22937) (434 aa) fasta scores: E(): 0%2C83.4%25 id in 434 aa%2C and to Yersinia enterocolitica inosine-guanosine kinase Gsk TR:Q56875 (EMBL:U46859) (434 aa) fasta scores: E(): 0%2C 90.3%25 id in 434 aa gene gene3047 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3095 YPO3096 YPO3096 cld cld 3453810 3454961 - O-antigen chain length determinant Similar to Yersinia pseudotuberculosis chain length determinant Cld or Wzz TR:Q56932 (EMBL:U13685) (383 aa) fasta scores: E(): 0%2C 98.7%25 id in 383 aa%2C and identical to the previously sequenced Yersinia pestis O-antigen chain length determinant-like protein Wzz TR:Q9RCC2 (EMBL:AJ251713) (383 aa) fasta scores: E(): 0%2C 100.0%25 id in 383 aa gene gene3048 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3096 YPO3097 YPO3097 manB manB 3455009 3456382 - phosphomannomutase Similar to Yersinia pseudotuberculosis phosphomannomutase ManB TR:Q9RCA9 (EMBL:AJ251712) (457 aa) fasta scores: E(): 0%2C 99.8%25 id in 457 aa%2C and to Yersinia enterocolitica phosphomannomutase RfbK or ManB TR:Q57439 (EMBL:U46859) (456 aa) fasta scores: E(): 0%2C 81.8%25 id in 456 aa. Identical to the previously sequenced Yersinia pestis phosphomannomutase ManB TR:Q9RCC3 (EMBL:AJ251713) (457 aa) fasta scores: E(): 0%2C 100.0%25 id in 457 aa. Similar to YPO2479 (61.4%25 identity in 461 aa overlap) gene gene3049 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3097 YPO3098 YPO3098 wbyL wbyL 3456387 3457130 - probable glycosyltransferase Identical to the previously sequenced Yersinia pestis glycosyltransferase-like protein WbyL TR:Q9RCC4 (EMBL:AJ251713) (247 aa) fasta scores: E(): 0%2C 100.0%25 id in 247 aa%2C and similar to Yersinia pseudotuberculosis glycosyltransferase-like protein WbyL TR:Q9RCB0 (EMBL:AJ251712) (247 aa) fasta scores: E(): 0%2C 99.6%25 id in 247 aa gene gene3050 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3098 YPO3099 YPO3099 manC manC 3457133 3458545 - mannose-1-phosphate guanylyltransferase Similar to Yersinia pseudotuberculosis mannose-1-phosphate guanylyltransferase ManC TR:Q9RCB1 (EMBL:AJ251712) (468 aa) fasta scores: E(): 0%2C 99.8%25 id in 468 aa%2C and to Yersinia enterocolitica mannose-1-phosphate guanylyltransferase RfbM or ManC TR:Q56874 (EMBL:U46859) (465 aa) fasta scores: E(): 0%2C 80.7%25 id in 462 aa%2C and identical to the previously sequenced Yersinia pestis mannose-1-phosphate guanylyltransferase ManC TR:Q9RCC5 (EMBL:AJ251713) (468 aa) fasta scores: E(): 0%2C 100.0%25 id in 468 aa gene gene3051 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3099 YPO3100 YPO3100 fcL fcL 3458733 3459697 - GDP-L-fucose synthetase (pseudogene) Identical to Yersinia pseudotuberculosis GDP-L-fucose synthetase Fcl TR:Q9RCB2 (EMBL:AJ251712) (321 aa) fasta scores: E(): 0%2C 100.0%25 id in 321 aa%2C and similar to Yersinia enterocolitica fucose synthetase WbcJ TR:Q56873 (EMBL:U46859) (321 aa) fasta scores: E(): 0%2C 84.4%25 id in 321 aa. There is a frameshift following codon 68. Frameshift occurs within a homopolymeric tract of 6G. The sequence has been checked and is believed to be correct pseudogene gene3052 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3100 YPO3102 YPO3102 gmd gmd 3459703 3460825 - probable GDP-mannose 4%2C6-dehydratase (pseudogene) Similar to Yersinia enterocolitica probable GDP-mannose 4%2C6-dehydratase Gmd SW:GM4D_YEREN (Q56872) (372 aa) fasta scores: E(): 0%2C 88.9%25 id in 371 aa%2C and to Yersinia pseudotuberculosis GDP-mannose-4%2C6-dehydratase Gmd TR:Q9RCB3 (EMBL:AJ251712) (373 aa) fasta scores: E(): 0%2C99.7%25 id in 373 aa. There is a frameshift following codon 156. The sequence has been checked and is believed to be correct pseudogene gene3053 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3102 YPO3104 YPO3104 wbyK wbyK 3460841 3461854 - putative mannosyltransferase Identical to to the previously sequenced Yersinia pestis mannosyltransferase-like protein WbyK TR:Q9RCC6 (EMBL:AJ251713) (337 aa) fasta scores: E(): 0%2C 100.0%25 id in 337 aa%2C and similar to Yersinia pseudotuberculosis mannosyltransferase-like protein WbyK TR:Q9RCB4 (EMBL:AJ251712) (337 aa) fasta scores: E(): 0%2C 99.7%25 id in 337 aa gene gene3054 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3104 YPO3105 YPO3105 wzy wzy 3462103 3463324 - putative O-unit polymerase protein (pseudogene) Identical to Yersinia pseudotuberculosis O-unit polymerase-like protein Wzy TR:Q9RCB5 (EMBL:AJ251712) (406 aa) fasta scores: E(): 0%2C 100.0%25 id in 406 aa. There is a frameshift following codon 145. Frameshift occurs within a homopolymeric tract of 9T. The sequence has been checked and is believed to be correct pseudogene gene3055 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3105 YPO3107 YPO3107 wbyJ wbyJ 3463321 3464463 - putative mannosyltransferase Similar to Yersinia pseudotuberculosis putative mannosyltransferase WbyJ TR:Q9R3Y6 (EMBL:AJ251712) (380 aa) fasta scores: E(): 0%2C 99.7%25 id in 380 aa gene gene3056 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3107 YPO3108 YPO3108 wbyI wbyI 3464635 3465556 - putative glycosyltransferase (pseudogene) Similar to Yersinia pseudotuberculosis glycosyltransferase-like protein WbyI TR:Q9RCB6 (EMBL:AJ251712) (327 aa) fasta scores: E(): 0%2C 92.0%25 id in 327 aa. There is a frameshift and deletion following codon 227. The sequence has been checked and is believed to be correct pseudogene gene3057 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3108 YPO3110 YPO3110 wzx wzx 3465567 3466910 - putative O-unit flippase Identical to the previously sequenced Yersinia pestis O-unit flippase-like protein Wzx TR:Q9RCC7 (EMBL:AJ251713) (447 aa) fasta scores: E(): 0%2C 100.0%25 id in 447 aa%2C and similar to Yersinia pseudotuberculosis O-unit flippase-like protein Wzx TR:Q9RCB7 (EMBL:AJ251712) (447 aa) fasta scores: E(): 0%2C 90.4%25 id in 447 aa gene gene3058 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3110 YPO3111 YPO3111 wbyH wbyH 3466984 3468267 - putative exported protein Similar to Yersinia pseudotuberculosis WbyH protein TR:Q9RCB8 (EMBL:AJ251712) (427 aa) fasta scores: E(): 0%2C99.1%25 id in 427 aa%2C and identical to the previously sequenced Yersinia pestis WbyH protein TR:Q9RCC8 (EMBL:AJ251713) (427 aa) fasta scores: E(): 0%2C 100.0%25 id in 427 aa gene gene3059 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3111 YPO3112 YPO3112 prt prt 3468268 3469125 - paratose synthase Similar to Salmonella typhi paratose synthase RfbS SW:RFBS_SALTI (P14168) (279 aa) fasta scores: E(): 0%2C 43.9%25 id in 280 aa%2C and to Yersinia pseudotuberculosis CDP-paratose synthetase RfbS or Prt TR:Q56946 (EMBL:U29692) (285 aa) fasta scores: E(): 0%2C 99.3%25 id in 285 aa%2C and identical to the previously sequenced Yersinia pestis CDP-paratose synthetase Prt TR:Q9RCC9 (EMBL:AJ251713) (285 aa) fasta scores: E(): 0%2C 100.0%25 id in 285 aa gene gene3060 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3112 YPO3113 YPO3113 ddhC ddhC 3469162 3470475 - putative CDP-4-keto-6-deoxy-D-glucose-3-dehydratase Identical to the previously sequenced Yersinia pestis CDP-4-keto-6-deoxy-D-glucose-3-dehydratase DdhC TR:Q9RCD0 (EMBL:AJ251713) (437 aa) fasta scores: E(): 0%2C100.0%25 id in 437 aa%2C and similar to Yersinia pseudotuberculosis CDP-4-keto-6-deoxy-D-glucose-3-dehydrase DdhC TR:Q05341 (EMBL:L01777) (437 aa) fasta scores: E(): 0%2C99.8%25 id in 437 aa gene gene3061 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3113 YPO3114 YPO3114 ascB ascB 3470493 3471568 - CDP-D-glucose-4%2C6-dehydratase (pseudogene) Similar to Yersinia pseudotuberculosis CDP-D-glucose-4%2C6-dehydratase AscB or DdhB TR:Q57329 (EMBL:L33181) (357 aa) fasta scores: E(): 0%2C 99.2%25 id in 358 aa%2C and to Yersinia enterocolitica CDP-glucose 4%2C6-dehydratase ddhb or RfbG TR:Q56861 (EMBL:U46859) (358 aa) fasta scores: E(): 0%2C 77.7%25 id in 359 aa. There is a frameshift following codon 41. The frameshift occurs within a Homopolymeric tract of 11C. The sequence has been checked and is believed to be correct pseudogene gene3062 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3114 YPO3115 YPO3115 ddhA ddhA 3471573 3472358 - glucose-1-phosphate cytidylyltransferase Similar to Yersinia enterocolitica glucose-1-phosphate cytidylyltransferase DdhA or RfbF TR:Q56860 (EMBL:U46859) (261 aa) fasta scores: E(): 0%2C90.4%25 id in 261 aa%2C and identical to Yersinia pseudotuberculosis glucose-1-phosphate cytidylyltransferase RfbF or DdhA TR:Q05339 (EMBL:L01777) (261 aa) fasta scores: E(): 0%2C 100.0%25 id in 261 aa gene gene3063 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3115 YPO3116 YPO3116 ascD ascD 3472384 3473373 - cdp-6-deoxy-delta-3%2C4-glucoseen reductase Identical to Yersinia pseudotuberculosis CDP-6-deoxy-delta-3%2C4-glucoseen reductase AscD or RfbI SW:ASCD_YERPS (P37911) (328 aa) fasta scores: E(): 0%2C100.0%25 id in 328 aa%2C and to the previously sequenced Yersinia pestis CDP-6-deoxy-delta-3%2C4-glucoseen reductase DdhD TR:CAB63270 (EMBL:AJ251713) (329 aa) fasta scores: E(): 0%2C 100.0%25 id in 329 aa gene gene3064 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3116 YPO3117 YPO3117 hemH hemH 3473971 3474933 - ferrochelatase Similar to Escherichia coli ferrochelatase HemH or PopA or VisA SW:HEMZ_ECOLI (P23871) (320 aa) fasta scores: E(): 0%2C 67.4%25 id in 316 aa%2C and to Yersinia enterocolitica ferrochelatase HemH SW:HEMZ_YEREN (P43413) (308 aa) fasta scores: E(): 0%2C 90.6%25 id in 307 aa gene gene3065 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3117 YPO3118 YPO3118 adk adk 3475023 3475667 - adenylate kinase Identical to the previously sequenced Yersinia pestis adenylate kinase Adk SW:KAD_YERPE (O69172) (214 aa) fasta scores: E(): 0%2C 100.0%25 id in 214 aa%2C and similar to Escherichia coli adenylate kinase Adk or PlsA or DnaW SW:KAD_ECOLI (P05082) (214 aa) fasta scores: E(): 0%2C 87.4%25 id in 214 aa gene gene3066 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3118 YPO3119 YPO3119 htpG htpG 3475894 3477768 - heat shock protein HtpG Similar to Escherichia coli heat shock protein HtpG SW:HTPG_ECOLI (P10413) (624 aa) fasta scores: E(): 0%2C 86.4%25 id in 624 aa%2C and to Actinobacillus actinomycetemcomitans (Haemophilus actinomycetemcomitans) heat shock protein HtpG SW:HTPG_ACTAC (P54649) (626 aa) fasta scores: E(): 0%2C 76.7%25 id in 621 aa gene gene3067 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3119 YPO3120 YPO3120 recR recR 3477960 3478565 - recombination protein RecR Similar to Escherichia coli recombination protein RecR SW:RECR_ECOLI (P12727) (201 aa) fasta scores: E(): 0%2C85.6%25 id in 201 aa%2C and to Haemophilus influenzae recombination protein RecR or Hi0443 SW:RECR_HAEIN (P44712) (200 aa) fasta scores: E(): 0%2C 75.4%25 id in 199 aa gene gene3068 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3120 YPO3121 YPO3121 YPO3121 3478565 3478897 - conserved hypothetical protein Similar to Escherichia coli hypothetical protein YbaB SW:YBAB_ECOLI (P17577) (109 aa) fasta scores: E(): 0%2C91.8%25 id in 110 aa%2C and to Haemophilus influenzae hypothetical protein HI0442 SW:YBAB_HAEIN (P44711) (109 aa) fasta scores: E(): 1.3e-31%2C 81.8%25 id in 110 aa gene gene3069 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3121 YPO3122 YPO3122 dnaX dnaX 3478953 3480929 - DNA polymerase III subunit Tau (contains DNA polymerase III subunit Gamma) Similar to Escherichia coli DNA polymerase III subunit Tau (contains DNA polymerase III subunit Gamma) DnaX or DnaZ or DnaZX SW:DP3X_ECOLI (P06710) (643 aa) fasta scores: E(): 0%2C 73.5%25 id in 660 aa gene gene3070 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3122 YPO3123 YPO3123 apt apt 3481585 3482148 - adenine phosphoribosyltransferase Similar to Escherichia coli adenine phosphoribosyltransferase Apt SW:APT_ECOLI (P07672) (183 aa) fasta scores: E(): 0%2C 80.2%25 id in 182 aa%2C and to Vibrio cholerae adenine phosphoribosyltransferase Vc1053 TR:Q9KT52 (EMBL:AE004187) (181 aa) fasta scores: E(): 0%2C 74.4%25 id in 180 aa gene gene3071 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3123 YPO3125 YPO3125 YPO3125 3482565 3484364 - insertion sequence IS100%2C transposase and ATP-binding fusion protein (pseudogene) A fusion of the two CDS carried on IS100. The N-terminus is similar to Escherichia coli transposase for insertion sequence element IS21 IstA SW:ISTA_ECOLI (P15025) (390 aa) fasta scores: E(): 8.8e-25%2C 34.1%25 id in 308 aa and the C-terminus is similar to Escherichia coli insertion sequence IS21 putative ATP-binding protein SW:ISTB_ECOLI (P15026) (265 aa) fasta scores: E(): 0%2C 47.4%25 id in 249 aa. pseudogene gene3072 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3125 YPO3126 YPO3126 ybaN ybaN 3484455 3484724 - putative exported protein (pseudogene) This CDS is disrupted by the insertion of a truncated IS100 element and lacks 35 aa at the C-terminus. It is not clear whether this insertion affects the function of the protein. Similar to Escherichia coli hypothetical 14.8 kDa protein in priC-apt intergenic region YbaN SW:YBAN_ECOLI (P45808) (125 aa) fasta scores: E(): 1.2e-28%2C75.6%25 id in 90 aa%2C and to Vibrio cholerae hypothetical protein Vc1052 TR:Q9KT53 (EMBL:AE004187) (132 aa) fasta scores: E(): 3.1e-15%2C 47.8%25 id in 90 aa pseudogene gene3073 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3126 YPO3127 YPO3127 priC priC 3484925 3485461 + primosomal replication protein n'' Similar to Escherichia coli primosomal replication protein n'' PriC SW:PRIC_ECOLI (P23862) (174 aa) fasta scores: E(): 1.5e-15%2C 36.8%25 id in 171 aa%2C and to Vibrio cholerae primosomal replication protein n'' Vc1857 TR:Q9KQZ0 (EMBL:AE004261) (187 aa) fasta scores: E(): 2.4e-12%2C 32.0%25 id in 181 aa gene gene3074 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3127 YPO3128 YPO3128 YPO3128 3485632 3485787 + conserved hypothetical protein Similar to Escherichia coli hypothetical protein YbaM SW:YBAM_ECOLI (P45807) (53 aa) fasta scores: E(): 9.5e-07%2C 53.8%25 id in 52 aa%2C and to Vibrio cholerae hypothetical protein VC1858 TR:Q9KQY9 (EMBL:AE004261) (70 aa) fasta scores: E(): 8.7e-06%2C 51.1%25 id in 45 aa gene gene3075 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3128 YPO3129 YPO3129 aefA aefA 3486127 3489546 - putative potassium efflux system Similar to Escherichia coli potassium efflux system KefA or AefA SW:KEFA_ECOLI (P77338) (1120 aa) fasta scores: E(): 0%2C 59.3%25 id in 1112 aa gene gene3076 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3129 YPO3130 YPO3130 YPO3130 3489786 3490139 - conserved hypothetical protein Similar to Klebsiella pneumoniae YchN protein TR:Q9RLW1 (EMBL:L27824) (117 aa) fasta scores: E(): 0%2C80.3%25 id in 117 aa%2C and to Escherichia coli hypothetical protein YchN SW:YCHN_ECOLI (P39164) (117 aa) fasta scores: E(): 0%2C 77.8%25 id in 117 aa gene gene3077 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3130 YPO3131 YPO3131 acrR acrR 3490152 3490808 - putative tetR-family transcriptional regulatory protein Similar to Escherichia coli potential acrAB operon repressor AcrR SW:ACRR_ECOLI (P34000) (215 aa) fasta scores: E(): 0%2C 64.3%25 id in 210 aa%2C and to Pseudomonas putida ArpR arpR TR:Q9KJC4 (EMBL:AF183959) (210 aa) fasta scores: E(): 7.5e-28%2C 39.7%25 id in 209 aa gene gene3078 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3131 YPO3132 YPO3132 acrA acrA 3490953 3492140 + multidrug efflux protein Similar to Escherichia coli acriflavin resistance protein A precursor AcrA or MtcA or Lir SW:ACRA_ECOLI (P31223) (397 aa) fasta scores: E(): 0%2C 73.2%25 id in 396 aa. Similar to YPO3483 (50.0%25 identity in 372 aa overlap) gene gene3079 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3132 YPO3133 YPO3133 acrB acrB 3492157 3495309 + multidrug efflux protein Similar to Escherichia coli acriflavin resistance protein B AcrB or AcrE SW:ACRB_ECOLI (P31224) (1049 aa) fasta scores: E(): 0%2C 84.1%25 id in 1047 aa%2C and to Pseudomonas aeruginosa multidrug resistance protein mMxB or Pa0426 SW:MEXB_PSEAE (P52002) (1046 aa) fasta scores: E(): 0%2C 68.3%25 id in 1033 aa. Similar to YPO3043 (66.5%25 identity in 1032 aa overlap) and to YPO3482 (57.8%25 identity in 1044 aa overlap) gene gene3080 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3133 YPO3134 YPO3134 ykgM ykgM 3495495 3495755 + putative ribosomal protein Similar to Escherichia coli O157:H7 putative ribosomal protein YkgM TR:AAG54622 (EMBL:AE005206) (87 aa) fasta scores: E(): 4.1e-24%2C 69.0%25 id in 84 aa%2C and to Vibrio cholerae ribosomal protein L31P family Vc0878 TR:Q9KTM4 (EMBL:AE004172) (85 aa) fasta scores: E(): 1.4e-20%2C 62.5%25 id in 80 aa gene gene3081 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3134 YPO3135 YPO3135 YPO3135 3495771 3495914 + putative ribosomal protein L36 Similar to Vibrio cholerae ribosomal putative protein L36 Vc0879 TR:Q9KTM3 (EMBL:AE004172) (41 aa) fasta scores: E(): 8.8e-16%2C 87.5%25 id in 40 aa%2C and to Neisseria meningitidis (serogroup A) putative 50S ribosomal protein L36 Rpmj2 or Nma1137 or Nmb0941 TR:Q9JQV0 (EMBL:AL162755) (41 aa) fasta scores: E(): 7.6e-14%2C 82.5%25 id in 40 aa gene gene3082 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3135 YPO3136 YPO3136 YPO3136 3496788 3497141 + hypothetical protein no significant database hits gene gene3083 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3136 YPO3137 YPO3137 YPO3137 3497300 3497668 + conserved hypothetical protein Similar to Escherichia coli hypothetical protein YbaJ SW:YBAJ_ECOLI (P37611) (124 aa) fasta scores: E(): 1.4e-29%2C 65.8%25 id in 111 aa gene gene3084 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3137 YPO3138 YPO3138 ymoA ymoA 3497717 3497920 + modulating protein YmoA (histone-like protein) Identical to Yersinia enterocolitica modulating protein YmoA SW:YMOA_YEREN (P27720) (67 aa) fasta scores: E(): 1.1e-27%2C 100.0%25 id in 67 aa%2C and similar to Escherichia coli haemolysin expression modulating protein Hha SW:HHA_ECOLI (P23870) (72 aa) fasta scores: E(): 1e-22%2C82.1%25 id in 67 aa gene gene3085 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3138 YPO3139 YPO3139 YPO3139 3498652 3499197 + putative 6-O-methylguanine DNA methyltransferase family protein Similar to Escherichia coli hypothetical protein YbaZ SW:YBAZ_ECOLI (P75707) (129 aa) fasta scores: E(): 1.4e-25%2C 62.6%25 id in 115 aa%2C and to Vibrio cholerae methylated-DNA--protein-cysteine methyltransferase-related protein VC1065 TR:Q9KT40 (EMBL:AE004188) (100 aa) fasta scores: E(): 7.6e-17%2C 52.0%25 id in 98 aa gene gene3087 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3139 YPO3140 YPO3140 ybaY ybaY 3499333 3499854 - putative lipoprotein Similar to Escherichia coli hypothetical 19.4 kDa lipoprotein in tesB-hha intergenic region precursor YbaY SW:YBAY_ECOLI (P77717) (190 aa) fasta scores: E(): 2.5e-30%2C55.7%25 id in 167 aa gene gene3088 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3140 YPO3141 YPO3141 tesB tesB 3500111 3500971 + acyl-CoA thioesterase II Similar to Escherichia coli acyl-CoA thioesterase II TesB SW:TESB_ECOLI (P23911) (285 aa) fasta scores: E(): 0%2C78.9%25 id in 284 aa%2C and to Vibrio cholerae acyl-CoA thioesterase II Vc1063 TR:Q9KT42 (EMBL:AE004187) (286 aa) fasta scores: E(): 0%2C 63.7%25 id in 284 aa gene gene3089 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3141 YPO3142 YPO3142 amtB amtB 3501231 3502526 - probable ammonium transporter Similar to Escherichia coli probable ammonium transporter AmtB SW:AMTB_ECOLI (P37905) (428 aa) fasta scores: E(): 0%2C 79.0%25 id in 420 aa%2C and to Xylella fastidiosa ammonium transporter Xf1844 TR:Q9PCD7 (EMBL:AE004005) (492 aa) fasta scores: E(): 0%2C 60.0%25 id in 423 aa gene gene3090 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3142 YPO3143 YPO3143 glnK glnK 3502560 3502898 - nitrogen regulatory protein P-II Similar to Escherichia coli nitrogen regulatory protein P-II GlnK SW:GLNK_ECOLI (P38504) (112 aa) fasta scores: E(): 0%2C 94.6%25 id in 112 aa%2C and to Klebsiella pneumoniae PII-like nitrogen regulatory protein GlnK TR:Q9ZA65 (EMBL:AJ006531) (112 aa) fasta scores: E(): 0%2C95.5%25 id in 112 aa gene gene3091 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3143 YPO3144 YPO3144 mdl mdl 3503308 3505131 - probable ATP transporter (ATP-binding protein) Similar to Escherichia coli multidrug resistance-like ATP-binding protein MdlB or Mdl SW:MDLB_ECOLI (P75706) (593 aa) fasta scores: E(): 0%2C 78.9%25 id in 583 aa%2C and to Buchnera aphidicola (subsp. Acyrthosiphon pisum) multidrug resistance-like ATP-binding protein MdlB or Bu480 TR:BAB13177 (EMBL:AP001119) (590 aa) fasta scores: E(): 0%2C 56.9%25 id in 576 aa gene gene3092 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3144 YPO3145 YPO3145 mdl mdl 3505124 3506890 - probable ABC transporter (ATP-binding protein) Similar to Escherichia coli multidrug resistance-like ATP-binding protein MdlA or Mdl SW:MDLA_ECOLI (P77265) (590 aa) fasta scores: E(): 0%2C 76.1%25 id in 585 aa%2C and to Buchnera aphidicola (subsp. Acyrthosiphon pisum) multidrug resistance-like ATP-binding protein MdlA or Bu479 TR:BAB13176 (EMBL:AP001119) (589 aa) fasta scores: E(): 0%2C 60.9%25 id in 588 aa gene gene3093 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3145 YPO3146 YPO3146 YPO3146 3506992 3507453 - probable AsnC-family regulatory protein Similar to Zymomonas mobilis glutamate uptake regulatory protein Grp SW:GRP_ZYMMO (P74996) (164 aa) fasta scores: E(): 6.8e-27%2C 42.8%25 id in 152 aa%2C and to Escherichia coli hypothetical transcriptional regulator YbaO SW:YBAO_ECOLI (P54986) (152 aa) fasta scores: E(): 0%2C74.8%25 id in 151 aa gene gene3094 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3146 YPO3147 YPO3147 YPO3147 3507579 3508619 + putative Pyridoxal-phosphate dependent protein Similar to Emericella nidulans cysteine synthase CysB SW:CYSK_EMENI (P50867) (371 aa) fasta scores: E(): 1.2e-14%2C 26.7%25 id in 330 aa%2C and to Vibrio cholerae cysteine synthase/cystathionine beta-synthase family protein Vc1061 TR:Q9KT44 (EMBL:AE004187) (355 aa) fasta scores: E(): 0%2C 71.1%25 id in 342 aa gene gene3095 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3147 YPO3148 YPO3148 YPO3148 3508831 3509652 - putative haloacid dehalogenase-like hydrolase Similar to Escherichia coli hypothetical protein Cof SW:COF_ECOLI (P46891) (272 aa) fasta scores: E(): 0%2C 57.7%25 id in 272 aa%2C and to Vibrio cholerae hypothetical protein VC0134 TR:Q9KVK8 (EMBL:AE004104) (275 aa) fasta scores: E(): 0%2C 38.5%25 id in 265 aa gene gene3096 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3148 YPO3149 YPO3149 YPO3149 3509757 3511460 + conserved hypothetical protein Similar to Escherichia coli hypothetical protein YbaE SW:YBAE_ECOLI (P46890) (566 aa) fasta scores: E(): 0%2C46.5%25 id in 563 aa%2C and to Vibrio cholerae hypothetical protein VCA0578 TR:Q9KM11 (EMBL:AE004388) (565 aa) fasta scores: E(): 0%2C 25.9%25 id in 580 aa gene gene3097 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3149 YPO3150 YPO3150 YPO3150 3511725 3512423 + conserved hypothetical protein Similar to Arthrobacter viscosus aluminum resistance protein Alu1 TR:O52119 (EMBL:AF022216) (187 aa) fasta scores: E(): 0%2C 56.5%25 id in 168 aa%2C and to Escherichia coli hypothetical protein YbaX SW:YBAX_ECOLI (P77756) (231 aa) fasta scores: E(): 0%2C 80.1%25 id in 231 aa gene gene3098 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3150 YPO3151 YPO3151 YPO3151 3512509 3512916 - conserved hypothetical protein Similar to Escherichia coli hypothetical protein YbaW SW:YBAW_ECOLI (P77712) (132 aa) fasta scores: E(): 0%2C69.5%25 id in 131 aa%2C and to Neisseria meningitidis (serogroup A) hypothetical protein NMA0492 or NMB1959 TR:Q9JR32 (EMBL:AL162753) (127 aa) fasta scores: E(): 6.4e-12%2C 36.5%25 id in 126 aa gene gene3099 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3151 YPO3152 YPO3152 ybaV ybaV 3513270 3513716 - putative exported protein Similar to Escherichia coli hypothetical 12.7 kDa protein in hupB-cof intergenic region YbaV SW:YBAV_ECOLI (P77415) (123 aa) fasta scores: E(): 1.3e-08%2C 41.9%25 id in 105 aa%2C and to Pseudomonas aeruginosa hypothetical protein Pa3140 TR:AAG06528 (EMBL:AE004738) (109 aa) fasta scores: E(): 1e-07%2C 44.9%25 id in 78 aa gene gene3100 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3152 YPO3153 YPO3153 ppiD ppiD 3513856 3515742 - peptidyl-prolyl cis-trans isomerase D Similar to Escherichia coli peptidyl-prolyl cis-trans isomerase D PpiD SW:PPID_ECOLI (P77241) (623 aa) fasta scores: E(): 0%2C 58.9%25 id in 626 aa%2C and to Vibrio cholerae peptidyl-prolyl cis-trans isomerse D Vc1918 TR:Q9KQT0 (EMBL:AE004267) (619 aa) fasta scores: E(): 0%2C39.1%25 id in 619 aa gene gene3101 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3153 YPO3154 YPO3154 hopD hopD 3516043 3516315 - DNA-binding protein HU-beta Similar to Escherichia coli DNA-binding protein HU-beta (NS1) (HU1) HupB or HopD SW:DBHB_ECOLI (P02341) (90 aa) fasta scores: E(): 1.2e-28%2C 91.1%25 id in 90 aa%2C and to Salmonella typhimurium DNA-binding protein HU-beta HupB SW:DBHB_SALTY (P05515) (90 aa) fasta scores: E(): 3.1e-28%2C90.0%25 id in 90 aa gene gene3102 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3154 YPO3155 YPO3155 capR capR 3516533 3518887 - ATP-dependent protease La Similar to Escherichia coli ATP-dependent protease La Lon or CapR or Deg or Muc or LopA SW:LON_ECOLI (P08177) (784 aa) fasta scores: E(): 0%2C 91.1%25 id in 784 aa%2C and to Erwinia amylovora ATP-dependent protease La Lon SW:LON_ERWAM (P46067) (784 aa) fasta scores: E(): 0%2C 90.2%25 id in 784 aa gene gene3103 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3155 YPO3156 YPO3156 clpX clpX 3519082 3520353 - ATP-dependent Clp protease ATP-binding subunit ClpX Similar to Escherichia coli ATP-dependent Clp protease ATP-binding subunit ClpX or LopC SW:CLPX_ECOLI (P33138) (423 aa) fasta scores: E(): 0%2C 92.7%25 id in 423 aa%2Cand to Yersinia enterocolitica ATP-dependent clp protease ATP-binding subunit ClpX SW:CLPX_YEREN (O33873) (423 aa) fasta scores: E(): 0%2C 97.6%25 id in 423 aa gene gene3104 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3156 YPO3157 YPO3157 clpP clpP 3520559 3521182 - ATP-dependent Clp protease proteolytic subunit ClpP Similar to Escherichia coli ATP-dependent Clp protease proteolytic subunit ClpP or LopP SW:CLPP_ECOLI (P19245) (207 aa) fasta scores: E(): 0%2C 89.4%25 id in 207 aa%2Cand to Yersinia enterocolitica ATP-dependent Clp protease proteolytic subunit ClpP SW:CLPP_YEREN (Q60107) (207 aa) fasta scores: E(): 0%2C 98.1%25 id in 207 aa gene gene3105 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3157 YPO3158 YPO3158 tig tig 3521644 3522948 - Trigger factor Similar to Escherichia coli trigger factor Tig SW:TIG_ECOLI (P22257) (432 aa) fasta scores: E(): 0%2C 86.3%25 id in 430 aa%2C and to Vibrio cholerae trigger factor Tig or Vc1923 TR:Q9KQS5 (EMBL:AE004268) (433 aa) fasta scores: E(): 0%2C 68.4%25 id in 433 aa gene gene3106 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3158 YPO3159 YPO3159 YPO3159 3523021 3523224 - hypothetical protein no significant database hits gene gene3107 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3159 YPO3160 YPO3160 bolA bolA 3523365 3523685 - BolA protein Similar to Escherichia coli BolA protein SW:BOLA_ECOLI (P15298) (105 aa) fasta scores: E(): 5.5e-31%2C72.4%25 id in 105 aa%2C and to Vibrio alginolyticus BolA protein homolog SW:BOLA_VIBAL (Q56585) (102 aa) fasta scores: E(): 6.9e-23%2C 56.6%25 id in 99 aa gene gene3108 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3160 YPO3161 YPO3161 yajG yajG 3524034 3524612 + putative lipoprotein Similar to Escherichia coli hypothetical 20.9 kDa lipoprotein in ampG-bolA intergenic region precursor YajG SW:YAJG_ECOLI (P36671) (192 aa) fasta scores: E(): 0%2C 72.4%25 id in 192 aa gene gene3109 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3161 YPO3162 YPO3162 ampG ampG 3524730 3526208 + Beta-lactamase induction signal transducer AmpG Similar to Escherichia coli AmpG protein SW:AMPG_ECOLI (P36670) (491 aa) fasta scores: E(): 0%2C 73.1%25 id in 491 aa%2C and to Neisseria meningitidis putative integral membrane signal transducer protein Nma2127 TR:Q9JSU7 (EMBL:AL162758) (427 aa) fasta scores: E(): 0%2C40.6%25 id in 399 aa gene gene3110 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3162 YPO3163 YPO3163 yfeN yfeN 3526500 3527267 + putative exported protein Similar to Escherichia coli hypothetical 29.2 kDa protein in xapA-lig intergenic region YfeN SW:YFEN_ECOLI (P45564) (254 aa) fasta scores: E(): 0%2C 60.3%25 id in 257 aa gene gene3111 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3163 YPO3164 YPO3164 cyoA cyoA 3527637 3528593 + cytochrome O ubiquinol oxidase subunit II Similar to Escherichia coli ubiquinol oxidase polypeptide II precursor CyoA SW:CYOA_ECOLI (P18400) (315 aa) fasta scores: E(): 0%2C 66.9%25 id in 317 aa%2C and to Pseudomonas putida ubiquinol oxidase polypeptide II precursor CyoA SW:CYOA_PSEPU (Q9WWR1) (314 aa) fasta scores: E(): 0%2C 57.5%25 id in 320 aa gene gene3112 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3164 YPO3165 YPO3165 cyoB cyoB 3528598 3530589 + cytochrome O ubiquinol oxidase subunit I Similar to Escherichia coli ubiquinol oxidase polypeptide I CyoB SW:CYOB_ECOLI (P18401) (663 aa) fasta scores: E(): 0%2C 84.3%25 id in 663 aa%2C and to Pseudomonas aeruginosa cytochrome O ubiquinol oxidase subunit I CyoB or Pa1318 TR:AAG04707 (EMBL:AE004561) (658 aa) fasta scores: E(): 0%2C 67.7%25 id in 656 aa gene gene3113 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3165 YPO3166 YPO3166 cyoC cyoC 3530579 3531193 + cytochrome O ubiquinol oxidase subunit III Similar to Escherichia coli cytochrome O ubiquinol oxidase subunit III CyoC SW:CYOC_ECOLI (P18402) (204 aa) fasta scores: E(): 0%2C 75.1%25 id in 205 aa%2C and to Pseudomonas putida cytochrome O ubiquinol oxidase subunit III CyoC SW:CYOC_PSEPU (Q9WWR3) (207 aa) fasta scores: E(): 0%2C 64.6%25 id in 209 aa gene gene3114 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3166 YPO3167 YPO3167 cyoD cyoD 3531193 3531525 + cytochrome O ubiquinol oxidase subunit CyoD Similar to Escherichia coli cytochrome O ubiquinol oxidase protein CyoD SW:CYOD_ECOLI (P18403) (109 aa) fasta scores: E(): 2.7e-25%2C 65.1%25 id in 109 aa%2C and to Pseudomonas aeruginosa cytochrome O ubiquinol oxidase subunit IV CyoD or Pa1320 TR:AAG04709 (EMBL:AE004561) (111 aa) fasta scores: E(): 1.1e-19%2C 57.4%25 id in 108 aa gene gene3115 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3167 YPO3168 YPO3168 cyoE cyoE 3531536 3532426 + protoheme IX farnesyltransferase Similar to Escherichia coli protoheme IX farnesyltransferase CyoE SW:CYOE_ECOLI (P18404) (296 aa) fasta scores: E(): 0%2C 83.9%25 id in 292 aa%2C and to Pseudomonas putida protoheme IX farnesyltransferase CyoE SW:CYOE_PSEPU (Q9WWR5) (295 aa) fasta scores: E(): 0%2C 65.5%25 id in 293 aa gene gene3116 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3168 YPO3169 YPO3169 yajR yajR 3532904 3534274 + putative transporter Similar to Escherichia coli hypothetical 49.0 kDa protein in abpA-cyoE intergenic region YajR SW:YAJR_ECOLI (P77726) (456 aa) fasta scores: E(): 0%2C 72.8%25 id in 456 aa%2Cand to Pseudomonas aeruginosa probable MFS transporter Pa4233 TR:AAG07621 (EMBL:AE004840) (462 aa) fasta scores: E(): 0%2C 56.6%25 id in 458 aa gene gene3117 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3169 YPO3170 YPO3170 YPO3170 3534398 3534898 - conserved hypothetical protein Similar to Escherichia coli protein YajQ SW:YAJQ_ECOLI (P77482) (169 aa) fasta scores: E(): 0%2C 73.0%25 id in 163 aa%2C and to Pasteurella multocida hypothetical protein PM1656 TR:AAK03740 (EMBL:AE006202) (163 aa) fasta scores: E(): 0%2C 76.7%25 id in 163 aa gene gene3118 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3170 YPO3171 YPO3171 apbA apbA 3535121 3536032 + 2-dehydropantoate 2-reductase Similar to Salmonella typhimurium 2-dehydropantoate 2-reductase ApbA or PanE SW:APBA_SALTY (P37402) (281 aa) fasta scores: E(): 0%2C 60.9%25 id in 276 aa%2C and to Escherichia coli 2-dehydropantoate 2-reductase ApbA or PanE SW:APBA_ECOLI (P77728) (303 aa) fasta scores: E(): 0%2C 63.0%25 id in 303 aa gene gene3119 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3171 YPO3172 YPO3172 thiJ thiJ 3535995 3536585 + 4-methyl-5(B-hydroxyethyl)-thiazol monophosphate biosynthesis enzyme Similar to Escherichia coli 4-methyl-5(B-hydroxyethyl)-thiazol monophosphate biosynthesis enzyme ThiJ SW:THIJ_ECOLI (Q46948) (196 aa) fasta scores: E(): 0%2C 74.0%25 id in 196 aa%2C and to Vibrio cholerae 4-methyl-5(B-hydroxyethyl)-thiazol monophosphate biosynthesis enzyme Vc2308 TR:Q9KPQ8 (EMBL:AE004301) (205 aa) fasta scores: E(): 5.2e-27%2C 46.0%25 id in 189 aa gene gene3120 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3172 YPO3173 YPO3173 thiI thiI 3536653 3538104 - thiamine biosynthesis protein Similar to Salmonella typhimurium thiamine biosynthesis protein ThiI SW:THII_SALTY (P55913) (482 aa) fasta scores: E(): 0%2C 82.6%25 id in 483 aa%2C and to Escherichia coli thiamine biosynthesis protein ThiI SW:THII_ECOLI (P77718) (482 aa) fasta scores: E(): 0%2C 81.8%25 id in 483 aa gene gene3121 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3173 YPO3174 YPO3174 YPO3174 3538202 3538372 - hypothetical protein no significant database hits gene gene3122 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3174 YPO3175 YPO3175 xseB xseB 3538454 3538708 + exodeoxyribonuclease VII small subunit Similar to Escherichia coli exodeoxyribonuclease VII small subunit XseB SW:EX7S_ECOLI (P22938) (79 aa) fasta scores: E(): 1e-19%2C 77.1%25 id in 83 aa%2C and to Haemophilus influenzae exodeoxyribonuclease VII small subunit Xseb or HI1437 SW:EX7S_HAEIN (P43914) (84 aa) fasta scores: E(): 3.4e-12%2C 58.2%25 id in 79 aa. This CDS contains a small insertion (4 amino acids) at the N-terminal end gene gene3123 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3175 YPO3176 YPO3176 ispA ispA 3538713 3539633 + geranyltranstransferase Similar to Escherichia coli geranyltranstransferase IspA SW:ISPA_ECOLI (P22939) (299 aa) fasta scores: E(): 0%2C72.5%25 id in 298 aa%2C and to Vibrio cholerae geranyltranstransferase Vc0890 TR:Q9KTL2 (EMBL:AE004173) (294 aa) fasta scores: E(): 0%2C 64.1%25 id in 295 aa gene gene3124 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3176 YPO3177 YPO3177 b0420 b0420 3539789 3541648 + 1-deoxy-D-xylulose 5-phosphate synthase Similar to Escherichia coli 1-deoxy-D-xylulose 5-phosphate synthase Dxs or B0420 SW:DXS_ECOLI (P77488) (619 aa) fasta scores: E(): 0%2C 82.7%25 id in 619 aa%2C and to Vibrio cholerae 1-deoxy-D-xylulose 5-phosphate synthase Dxs or Vc0889 TR:Q9KTL3 (EMBL:AE004173) (626 aa) fasta scores: E(): 0%2C 75.8%25 id in 625 aa gene gene3125 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3177 YPO3178 YPO3178 tnp tnp 3541827 3542285 - transposase for the IS1541 insertion element Similar to Salmonella typhimurium and Salmonella typhi transposase for insertion sequence IS200%2C TnpA%2CSW:TNPA_SALTY (Q57334) (152 aa) fasta scores: E(): 0%2C 93.4%25 id in 152 aa. Almost identical to the Yersinia pseudotuberculosis IS1541-like element transposase Tnp TR:Q9X9F5 (EMBL:AJ238014) (152 aa) fasta scores: E(): 0%2C99.3%25 id in 152 aa gene gene3126 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3178 YPO3179 YPO3179 pgpA pgpA 3542499 3542984 - phosphatidylglycerophosphatase A Similar to Escherichia coli phosphatidylglycerophosphatase A PgpA SW:PGPA_ECOLI (P18200) (172 aa) fasta scores: E(): 0%2C 75.0%25 id in 160 aa%2Cand to Vibrio cholerae phosphatidylglycerophosphatase A Vc2265 TR:Q9KPU7 (EMBL:AE004298) (169 aa) fasta scores: E(): 0%2C 60.4%25 id in 164 aa gene gene3127 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3179 YPO3180 YPO3180 thiL thiL 3542977 3543966 - thiamine-monophosphate kinase Similar to Escherichia coli thiamine-monophosphate kinase ThiL SW:THIL_ECOLI (P77785) (325 aa) fasta scores: E(): 0%2C 75.0%25 id in 324 aa%2C and to Salmonella typhimurium thiamine-monophosphate kinase ThiL SW:THIL_SALTY (P55881) (325 aa) fasta scores: E(): 0%2C 73.1%25 id in 324 aa gene gene3128 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3180 YPO3181 YPO3181 nusB nusB 3544207 3544623 - N utilization substance protein B Similar to Escherichia coli N utilization substance protein B NusB or SsyB SW:NUSB_ECOLI (P04381) (139 aa) fasta scores: E(): 0%2C 83.3%25 id in 138 aa%2C and to Shigella flexneri NusB TR:O51826 (EMBL:AF002857) (101 aa) fasta scores: E(): 6.8e-31%2C 82.2%25 id in 101 aa gene gene3129 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3181 YPO3182 YPO3182 ribE ribE 3544644 3545114 - 6%2C7-dimethyl-8-ribityllumazine synthase Similar to Photobacterium phosphoreum 6%2C7-dimethyl-8-ribityllumazine synthase RibH SW:RISB_PHOPO (P51963) (155 aa) fasta scores: E(): 0%2C 68.4%25 id in 155 aa%2Cand to Escherichia coli 6%2C7-dimethyl-8-ribityllumazine synthase RibH or RibE SW:RISB_ECOLI (P25540) (156 aa) fasta scores: E(): 0%2C 86.5%25 id in 155 aa gene gene3130 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3182 YPO3183 YPO3183 ribD ribD 3545250 3546359 - riboflavin biosynthesis protein RibD [includes: diaminohydroxyphosphoribosylaminopyrimidine deaminase%3B 5-amino-6-(5-phosphoribosylamino)uracil reductase Similar to Escherichia coli riboflavin biosynthesis protein RibD or RibG SW:RIBD_ECOLI (P25539) (367 aa) fasta scores: E(): 0%2C 73.2%25 id in 365 aa%2C and to Haemophilus influenzae riboflavin biosynthesis protein ribD or RibG or hi0944 SW:RIBD_HAEIN (P44326) (372 aa) fasta scores: E(): 0%2C 56.8%25 id in 366 aa gene gene3131 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3183 YPO3184 YPO3184 YPO3184 3546509 3546958 - conserved hypothetical protein Similar to Escherichia coli hypothetical protein YbaD SW:YBAD_ECOLI (P25538) (149 aa) fasta scores: E(): 0%2C86.6%25 id in 149 aa%2C and to Shigella flexneri hypothetical protein TR:O51824 (EMBL:AF002857) (149 aa) fasta scores: E(): 0%2C 85.2%25 id in 149 aa gene gene3132 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3184 YPO3185 YPO3185 YPO3185 3547029 3547622 - putative membrane protein Similar to Actinobacillus pleuropneumoniae TolQ protein tolQ TR:Q9ZAG4 (EMBL:Y17916) (222 aa) fasta scores: E(): 2.2%2C 26.4%25 id in 129 aa%2C and to the C-terminal region of Mycobacterium leprae putative 3-oxoacyl-[acyl-carrier protein] reductase Mlcb1883.19C TR:O69504 (EMBL:AL022486) (454 aa) fasta scores: E(): 7.7%2C 32.1%25 id in 106 aa gene gene3133 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3185 YPO3186 YPO3186 YPO3186 3547655 3548350 - hypothetical protein Weakly similar to the internal regions of Borrelia burgdorferi outer surface protein C TR:P96515 (EMBL:AB000352) (202 aa) fasta scores: E(): 2.9%2C 28.6%25 id in 98 aa%2C and to Bacillus pumilus putative Rap TR:O52357 (EMBL:AF036712) (370 aa) fasta scores: E(): 2.1%2C 24.3%25 id in 136 aa gene gene3134 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3186 YPO3187 YPO3187 tnp tnp 3548648 3549106 - transposase for the IS1541 insertion element Similar to Salmonella typhimurium and Salmonella typhi transposase for insertion sequence IS200%2C TnpA%2CSW:TNPA_SALTY (Q57334) (152 aa) fasta scores: E(): 0%2C 93.4%25 id in 152 aa. Almost identical to the Yersinia pseudotuberculosis IS1541-like element transposase Tnp TR:Q9X9F5 (EMBL:AJ238014) (152 aa) fasta scores: E(): 0%2C99.3%25 id in 152 aa gene gene3135 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3187 YPO3188 YPO3188 secF secF 3549313 3550281 - protein-export membrane protein SecF Similar to Escherichia coli protein-export membrane protein SecF SW:SECF_ECOLI (P19674) (323 aa) fasta scores: E(): 0%2C 80.8%25 id in 323 aa%2C and to Vibrio cholerae protein-export membrane protein SecF Vc0744 TR:Q9KTY6 (EMBL:AE004160) (315 aa) fasta scores: E(): 0%2C 61.0%25 id in 308 aa gene gene3136 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3188 YPO3189 YPO3189 secD secD 3550292 3552139 - protein-export membrane protein SecD Similar to Escherichia coli protein-export membrane protein SecD SW:SECD_ECOLI (P19673) (615 aa) fasta scores: E(): 0%2C 83.4%25 id in 615 aa%2C and to Enterobacter aerogenes protein SecD TR:Q9XBN2 (EMBL:AF163861) (615 aa) fasta scores: E(): 0%2C 84.2%25 id in 615 aa gene gene3137 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3189 YPO3190 YPO3190 yajC yajC 3552167 3552532 - putative membrane protein Similar to Escherichia coli%2C and Shigella flexneri hypothetical 11.9 kDa protein in tgt-secD intergenic region YajC SW:YAJC_ECOLI (P19677) (110 aa) fasta scores: E(): 0%2C84.7%25 id in 111 aa gene gene3138 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3190 YPO3191 YPO3191 tgt tgt 3552614 3553738 - queuine tRNA-ribosyltransferase Similar to Escherichia coli queuine tRNA-ribosyltransferase Tgt SW:TGT_ECOLI (P19675) (375 aa) fasta scores: E(): 0%2C 89.0%25 id in 374 aa%2C and to Shigella flexneri queuine tRNA-ribosyltransferase Tgt or VacC SW:TGT_SHIFL (Q54177) (375 aa) fasta scores: E(): 0%2C 89.0%25 id in 374 aa gene gene3139 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3191 YPO3192 YPO3192 queA queA 3553831 3554901 - S-adenosylmethionine:tRNA ribosyltransferase-isomerase Similar to Escherichia coli S-adenosylmethionine:tRNA ribosyltransferase-isomerase QueA SW:QUEA_ECOLI (P21516) (356 aa) fasta scores: E(): 0%2C 83.3%25 id in 354 aa%2C and to Vibrio cholerae S-adenosylmethionine:tRNA ribosyltransferase-isomerase Vc0739 TR:Q9KTZ1 (EMBL:AE004160) (352 aa) fasta scores: E(): 0%2C 70.9%25 id in 347 aa gene gene3140 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3192 YPO3193 YPO3193 YPO3193 3555104 3555685 + conserved hypothetical protein Similar to Escherichia coli hypothetical protein YajB SW:YAJB_ECOLI (P21515) (193 aa) fasta scores: E(): 0%2C60.1%25 id in 193 aa%2C and to Vibrio cholerae hypothetical protein VCA0769 TR:Q9KLH5 (EMBL:AE004405) (193 aa) fasta scores: E(): 2.1e-28%2C 42.3%25 id in 194 aa gene gene3141 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3193 YPO3194 YPO3194 ahpC ahpC 3555984 3556586 + putative alkyl hydroperoxide reductase subunit c Similar to Campylobacter jejuni alkyl hydroperoxide reductase subunit C AhpC or Cj0334 TR:Q9ZI13 (EMBL:AF044271) (198 aa) fasta scores: E(): 0%2C 59.8%25 id in 199 aa%2C and to Vibrio cholerae antioxidant%2C AhpC/Tsa family Vc0731 TR:Q9KTZ9 (EMBL:AE004159) (207 aa) fasta scores: E(): 0%2C 71.5%25 id in 200 aa gene gene3142 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3194 YPO3195 YPO3195 tnp tnp 3556801 3557259 + transposase for the IS1541 insertion element Similar to Salmonella typhimurium%2C and Salmonella typhi transposase for insertion sequence IS200 TnpA SW:T200_SALTY (Q57334) (152 aa) fasta scores: E(): 0%2C 94.1%25 id in 152 aa. Identical to the Yersinia pseudotuberculosis IS1541-like element transposase Tnp TR:Q9X9F5 (EMBL:AJ238014) (152 aa) fasta scores: E(): 0%2C 100.0%25 id in 152 aa gene gene3143 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3195 YPO3196 YPO3196 YPO3196 3557387 3557518 - hypothetical protein no significant database hits gene gene3144 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3196 YPO3197 YPO3197 YPO3197 3557544 3557819 - hypothetical protein no significant database hits gene gene3145 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3197 YPO3198 YPO3198 ggt ggt 3557687 3559452 + gamma-glutamyltranspeptidase precursor (pseudogene) Similar to Escherichia coli gamma-glutamyltranspeptidase precursor Ggt SW:GGT_ECOLI (P18956) (580 aa) fasta scores: E(): 0%2C 50.5%25 id in 533 aa%2Cand to Pseudomonas sp. gamma-glutamyltranspeptidase precursor Ggt SW:GGT_PSESP (P36267) (575 aa) fasta scores: E(): 0%2C 58.5%25 id in 581 aa. There is a frameshift after codon 82. The frameshift occurs within a homopolymeric tract of 10G. The sequence has been checked and is believed to be correct pseudogene gene3146 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3198 YPO3199 YPO3199 YPO3199 3559660 3560340 - probable short-chain dehydrogenase Similar to Salmonella typhimurium 3-oxoacyl-[acyl-carrier protein] reductase FabG SW:FABG_SALTY (O85141) (244 aa) fasta scores: E(): 1.1e-07%2C29.0%25 id in 193 aa%2C and to Pseudomonas aeruginosa probable dehydrogenase Pa4079 TR:AAG07466 (EMBL:AE004824) (229 aa) fasta scores: E(): 5.1e-28%2C 40.3%25 id in 226 aa%2C and to to Myxococcus xanthus C-factor CsgA or spoC SW:CSGA_MYXXA (P21158) (166 aa) fasta scores: E(): 2.4e-13%2C 32.7%25 id in 168 aa gene gene3147 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3199 YPO3200 YPO3200 malZ malZ 3560495 3562324 - putative maltodextrin glucosidase Similar to Escherichia coli maltodextrin glucosidase MalZ SW:MALZ_ECOLI (P21517) (605 aa) fasta scores: E(): 0%2C57.7%25 id in 608 aa gene gene3148 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3200 YPO3201 YPO3201 proY proY 3562885 3564276 - probable proline-specific permease Similar to Salmonella typhimurium proline-specific permease ProY SW:PROY_SALTY (P37460) (456 aa) fasta scores: E(): 0%2C 82.4%25 id in 450 aa%2C and to Escherichia coli proline-specific permease ProY SW:PROY_ECOLI (P77327) (457 aa) fasta scores: E(): 0%2C 81.6%25 id in 451 aa. Similar to YPO4015 (61.5%25 identity in 442 aa overlap) gene gene3149 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3201 YPO3202 YPO3202 brnQ brnQ 3564352 3565671 - branched-chain amino acid transport system II carrier protein Similar to Salmonella typhimurium branched-chain amino acid transport system II carrier protein BrnQ SW:BRNQ_SALTY (P14931) (439 aa) fasta scores: E(): 0%2C 74.6%25 id in 433 aa%2C and to Escherichia coli branched-chain amino acid transport system II carrier protein BrnQ SW:BRNQ_ECOLI (P37011) (439 aa) fasta scores: E(): 0%2C 76.0%25 id in 433 aa gene gene3150 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3202 YPO3203 YPO3203 pstS pstS 3566145 3567209 - phosphate binding protein Similar to Pseudomonas putida phosphate-binding protein PstS TR:Q9Z414 (EMBL:AB017356) (334 aa) fasta scores: E(): 0%2C 55.2%25 id in 310 aa%2C and to Pseudomonas aeruginosa phosphate binding protein PstS or Pa5369 TR:Q9Z9M3 (EMBL:AB017492) (323 aa) fasta scores: E(): 0%2C57.7%25 id in 307 aa gene gene3151 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3203 YPO3204 YPO3204 nmpB nmpB 3567231 3568547 - phosphate regulon sensor protein PhoR Similar to Escherichia coli phosphate regulon sensor protein PhoR or NmpB SW:PHOR_ECOLI (P08400) (431 aa) fasta scores: E(): 0%2C 73.2%25 id in 426 aa%2C and to Shigella dysenteriae phosphate regulon sensor protein PhoR SW:PHOR_SHIDY (P45609) (431 aa) fasta scores: E(): 0%2C 72.5%25 id in 426 aa gene gene3152 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3204 YPO3205 YPO3205 phoB phoB 3568572 3569261 - phosphate regulon transcriptional regulatory protein Similar to Escherichia coli phosphate regulon transcriptional regulatory protein PhoB SW:PHOB_ECOLI (P08402) (229 aa) fasta scores: E(): 0%2C 90.0%25 id in 229 aa%2Cand to Shigella dysenteriae phosphate regulon transcriptional regulatory protein PhoB SW:PHOB_SHIDY (P45606) (229 aa) fasta scores: E(): 0%2C 89.5%25 id in 229 aa gene gene3153 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3205 YPO3206 YPO3206 sbcD sbcD 3569529 3570773 + exonuclease SbcD Similar to Escherichia coli exonuclease SbcD SW:SBCD_ECOLI (P13457) (400 aa) fasta scores: E(): 0%2C 60.7%25 id in 402 aa%2C and to Pseudomonas aeruginosa exonuclease SbcD or PA4281 TR:AAG07669 (EMBL:AE004844) (409 aa) fasta scores: E(): 3.4e-32%2C 33.1%25 id in 390 aa gene gene3154 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3206 YPO3207 YPO3207 sbcC sbcC 3570770 3574420 + exonuclease SbcC (pseudogene) This CDS is disrupted by the insertion of IS100 element. The IS insertion occurred near the C-terminal end (following codon 1217)%2C replacing the very C-terminus with 17 aa encoded within the IS element. It is not clear whether this insertion affects the function of the protein. Similar to Escherichia coli exonuclease SbcC SW:SBCC_ECOLI (P13458) (1048 aa) fasta scores: E(): 0%2C 45.6%25 id in 1222 aa%2C and to Rhodobacter capsulatus potential exonuclease SbcC TR:O68032 (EMBL:AF010496) (1238 aa) fasta scores: E(): 0%2C 29.4%25 id in 1270 aa pseudogene gene3155 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3207 YPO3208 YPO3208 ypmt1.57c ypmt1.57c 3574487 3575269 - insertion sequence IS100%2C ATP-binding protein Similar to Escherichia coli insertion sequence IS21 putative ATP-binding protein%2C IstB SW:ISTB_ECOLI (P15026) (265 aa) fasta scores: E(): 0%2C 47.4%25 id in 249 aa. Also almost identical to Yersinia pestis and Escherichia coli putative IS100 transposase ypmt1.57c TR:Q9R3L5 (EMBL:AL117211) (260 aa) fasta scores: E(): 0%2C 99.6%25 id in 260 aa. gene gene3156 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3208 YPO3209 YPO3209 y1093 y1093 3575266 3576288 - transposase for insertion sequence IS100 Similar to Escherichia coli transposase for insertion sequence element IS21 IstA SW:ISTA_ECOLI (P15025) (390 aa) fasta scores: E(): 3e-27%2C 33.1%25 id in 329 aa. Identical to the previously sequenced Yersinia pestis%2CYersinia pseudotuberculosis%2C and Escherichia coli pesticin plasmid insertion sequence transposase Y1055 TR:P74993 (EMBL:U59875) (340 aa) fasta scores: E(): 0%2C 100.0%25 id in 340 aa gene gene3157 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3209 YPO3211 YPO3211 YPO3211 3577020 3577934 - conserved hypothetical protein Similar to Escherichia coli hypothetical protein YajF SW:YAJF_ECOLI (P23917) (302 aa) fasta scores: E(): 0%2C69.2%25 id in 299 aa%2C and to Vibrio cholerae ROK family protein Vc0270 TR:Q9KV86 (EMBL:AE004115) (326 aa) fasta scores: E(): 0%2C 46.3%25 id in 298 aa gene gene3158 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3211 YPO3212 YPO3212 rdgC rdgC 3578267 3579178 + recombination associated protein RdgC Similar to Escherichia coli recombination associated protein RdgC SW:RDGC_ECOLI (P36767) (303 aa) fasta scores: E(): 0%2C 83.4%25 id in 302 aa%2C and to Vibrio cholerae hypothetical protein Vc0718 TR:Q9KU12 (EMBL:AE004158) (304 aa) fasta scores: E(): 0%2C 55.7%25 id in 298 aa gene gene3159 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3212 YPO3213 YPO3213 YPO3213 3579414 3579701 - conserved hypothetical protein Similar to Escherichia coli hypothetical protein YaiE SW:YAIE_ECOLI (P36768) (94 aa) fasta scores: E(): 3.8e-23%2C 67.0%25 id in 94 aa%2C and to Pseudomonas aeruginosa hypothetical protein PA1574 TR:AAG04963 (EMBL:AE004586) (93 aa) fasta scores: E(): 1.4e-16%2C 50.5%25 id in 93 aa gene gene3160 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3213 YPO3214 YPO3214 YPO3214 3579765 3579935 - putative membrane protein no significant database matches gene gene3161 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3214 YPO3215 YPO3215 aroL aroL 3580191 3580715 - shikimate kinase II Similar to Escherichia coli shikimate kinase II AroL SW:AROL_ECOLI (P08329) (174 aa) fasta scores: E(): 1.5e-31%2C55.4%25 id in 168 aa%2C and to Erwinia chrysanthemi shikimate kinase AroL or AroM SW:AROL_ERWCH (P10880) (173 aa) fasta scores: E(): 0%2C 63.7%25 id in 168 aa gene gene3162 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3215 YPO3216 YPO3216 YPO3216 3580962 3581519 - putative methyltransferase Similar to Rhizobium meliloti phospholipid N-methyltransferase PmtA TR:AAG10237 (EMBL:AF201699) (200 aa) fasta scores: E(): 1.1e-07%2C 25.9%25 id in 185 aa%2C and to Bradyrhizobium japonicum PmtA protein TR:Q9LCT2 (EMBL:Y09633) (199 aa) fasta scores: E(): 0.0057%2C 24.2%25 id in 178 aa%2C and to Klebsiella pneumoniae hypothetical 22.7 kDa protein TR:O87755 (EMBL:AJ011907) (196 aa) fasta scores: E(): 0%2C 52.9%25 id in 191 aa gene gene3163 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3216 YPO3217 YPO3217 YPO3217 3581787 3582002 + hypothetical protein no significant database hits gene gene3164 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3217 YPO3218 YPO3218 YPO3218 3582249 3582770 - conserved hypothetical protein Similar to Escherichia coli hypothetical protein YafE SW:YAFE_ECOLI (P30866) (207 aa) fasta scores: E(): 0%2C65.1%25 id in 169 aa%2C and to Pseudomonas aeruginosa YafE or PA3119 TR:O87011 (EMBL:U93274) (187 aa) fasta scores: E(): 0%2C 55.2%25 id in 172 aa gene gene3165 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3218 YPO3219 YPO3219 YPO3219 3583016 3583285 - putative membrane protein no significant database matches gene gene3166 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3219 YPO3220 YPO3220 YPO3220 3583468 3584226 - conserved hypothetical protein Similar to Escherichia coli hypothetical protein YcgR SW:YCGR_ECOLI (P76010) (244 aa) fasta scores: E(): 0%2C40.7%25 id in 241 aa gene gene3167 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3220 YPO3221 YPO3221 proA proA 3584554 3585813 - gamma-glutamyl phosphate reductase Similar to Serratia marcescens gamma-glutamyl phosphate reductase ProA SW:PROA_SERMA (P17857) (417 aa) fasta scores: E(): 0%2C 85.1%25 id in 417 aa%2C and to Escherichia coli gamma-glutamyl phosphate reductase ProA SW:PROA_ECOLI (P07004) (417 aa) fasta scores: E(): 0%2C 72.4%25 id in 417 aa gene gene3168 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3221 YPO3222 YPO3222 proB proB 3585823 3586926 - glutamate 5-kinase Similar to Serratia marcescens glutamate 5-kinase ProB SW:PROB_SERMA (P17856) (367 aa) fasta scores: E(): 0%2C92.9%25 id in 367 aa%2C and to Escherichia coli glutamate 5-kinase ProB SW:PROB_ECOLI (P07005) (367 aa) fasta scores: E(): 0%2C 87.1%25 id in 365 aa gene gene3169 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3222 YPO3223 YPO3223 crl crl 3587103 3587504 - curlin genes regulatory protein Similar to Escherichia coli curlin genes transcriptional activatory protein Crl SW:CRL_ECOLI (P24251) (132 aa) fasta scores: E(): 0%2C 62.1%25 id in 132 aa%2Cand to Vibrio cholerae transcriptional regulator Crl VC2275 TR:Q9KPT7 (EMBL:AE004299) (129 aa) fasta scores: E(): 1.4e-17%2C 44.6%25 id in 112 aa gene gene3170 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3223 YPO3224 YPO3224 YPO3224 3587564 3588811 - conserved hypothetical protein Similar to Escherichia coli hypothetical protein YafA SW:YAFA_ECOLI (P04335) (433 aa) fasta scores: E(): 0%2C63.9%25 id in 407 aa%2C and to Vibrio cholerae hypothetical protein VC2276 TR:Q9KPT6 (EMBL:AE004299) (415 aa) fasta scores: E(): 0%2C 44.5%25 id in 411 aa gene gene3171 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3224 YPO3225 YPO3225 gpp gpp 3588938 3589396 - xanthine-guanine phosphoribosyltransferase Similar to Escherichia coli xanthine-guanine phosphoribosyltransferase Gpt or Gpp or Gxu SW:XGPT_ECOLI (P00501) (152 aa) fasta scores: E(): 0%2C 88.8%25 id in 152 aa%2Cand to Salmonella typhimurium xanthine-guanine phosphoribosyltransferase Gpt SW:XGPT_SALTY (P26972) (152 aa) fasta scores: E(): 0%2C 89.5%25 id in 152 aa gene gene3172 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3225 YPO3226 YPO3226 YPO3226 3589823 3590128 + putative membrane protein Similar to bacteriophage PS3 Gp13 TR:O80283 (EMBL:AJ011579) (105 aa) fasta scores: E(): 1.1e-07%2C 41.0%25 id in 78 aa%2C and to Bacillus halodurans inhibitor of the pro-sigma K processing machinery BofA TR:Q9KGM2 (EMBL:AP001507) (91 aa) fasta scores: E(): 5.4%2C 30.6%25 id in 85 aa gene gene3173 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3226 YPO3227 YPO3227 YPO3227 3590325 3591929 + putative carbohydrate-binding protein Similar to Pseudoalteromonas sp. S9 chitinase B ChiB TR:Q9ZIX3 (EMBL:AF007895) (525 aa) fasta scores: E(): 0%2C29.8%25 id in 507 aa%2C and to Pseudomonas aeruginosa CbpD precursor TR:Q9RMI4 (EMBL:AF196565) (389 aa) fasta scores: E(): 2.3e-11%2C 28.5%25 id in 383 aa gene gene3174 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3227 YPO3228 YPO3228 YPO3228 3592389 3593300 - putative LysR-family transcriptional regulatory protein Similar to Acinetobacter sp. ADP1 LysR-type transcriptional activator BenM TR:O68014 (EMBL:AF009224) (304 aa) fasta scores: E(): 1.2e-11%2C 25.7%25 id in 272 aa%2Cand to Ralstonia sp LysR-type transcriptional regulator ClcR TR:O69793 (EMBL:AJ006307) (294 aa) fasta scores: E(): 2.3e-10%2C 25.5%25 id in 302 aa gene gene3175 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3228 YPO3229 YPO3229 YPO3229 3594022 3594177 - hypothetical protein no significant database hits gene gene3176 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3229 YPO3230 YPO3230 pepD pepD 3595175 3596635 + aminoacyl-histidine dipeptidase Similar to Escherichia coli aminoacyl-histidine dipeptidase PepD or PepH SW:PEPD_ECOLI (P15288) (484 aa) fasta scores: E(): 0%2C 78.3%25 id in 484 aa%2C and to Haemophilus influenzae aminoacyl-histidine dipeptidase PepD or HI0675 SW:PEPD_HAEIN (P44817) (483 aa) fasta scores: E(): 0%2C 53.6%25 id in 485 aa gene gene3177 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3230 YPO3231 YPO3231 dinP dinP 3596749 3597807 - DNA-damage-inducible protein P Similar to Escherichia coli DNA-damage-inducible protein P DinP SW:DINP_ECOLI (Q47155) (351 aa) fasta scores: E(): 0%2C 76.2%25 id in 349 aa%2C and to Vibrio cholerae DNA-damage-inducible protein P Vc2287 TR:Q9KPS5 (EMBL:AE004300) (360 aa) fasta scores: E(): 0%2C 57.6%25 id in 349 aa gene gene3178 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3231 YPO3232 YPO3232 YPO3232 3598163 3599110 + putative exported protein Similar to Pseudomonas aeruginosa hypothetical protein Pa4792 TR:AAG08178 (EMBL:AE004892) (311 aa) fasta scores: E(): 4.4e-17%2C 39.1%25 id in 289 aa%2C and to Mycobacterium tuberculosis hypothetical 32.2 kDa protein Rv2277c precursor or Mtcy339.33 SW:YM77_MYCTU (Q50687) (301 aa) fasta scores: E(): 3.5e-16%2C 38.3%25 id in 290 aa gene gene3179 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3232 YPO3233 YPO3233 YPO3233 3599354 3599581 - putative exported protein Similar to Vibrio cholerae hypothetical protein Vc2288 TR:Q9KPS4 (EMBL:AE004300) (77 aa) fasta scores: E(): 1.4e-14%2C 58.8%25 id in 68 aa%2C and to Neisseria meningitidis (serogroup A) putative periplasmic protein Nma0745 or Nmb0562 TR:Q9JRI9 (EMBL:AL162754) (71 aa) fasta scores: E(): 1.2e-09%2C 49.2%25 id in 61 aa gene gene3180 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3233 YPO3234 YPO3234 apbE apbE 3599594 3600616 - thiamine biosynthesis lipoprotein Similar to Salmonella typhimurium thiamine biosynthesis lipoprotein ApbE precursor SW:APBE_SALTY (P41780) (350 aa) fasta scores: E(): 0%2C 43.1%25 id in 346 aa%2Cand to Vibrio cholerae thiamin biosynthesis lipoprotein ApbE Vc2289 TR:Q9KPS3 (EMBL:AE004300) (367 aa) fasta scores: E(): 0%2C 65.0%25 id in 337 aa gene gene3181 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3234 YPO3235 YPO3235 nqr6 nqr6 3600657 3601880 - NADH-uniquinone oxidoreductase subunit F Similar to Vibrio alginolyticus NADH-uniquinone oxidoreductase subunit F NqrF or Nqr6 TR:Q56584 (EMBL:AB008030) (407 aa) fasta scores: E(): 0%2C 80.3%25 id in 407 aa%2C and to Neisseria meningitidis putative NADH-uniquinone oxidoreductase subunit F NqrF or Nma0747 TR:Q9JVQ3 (EMBL:AL162754) (405 aa) fasta scores: E(): 0%2C79.4%25 id in 407 aa gene gene3182 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3235 YPO3236 YPO3236 nqr5 nqr5 3601896 3602492 - Na+-translocating NADH-quinone reductase subunit E Similar to Vibrio alginolyticus Na+-translocating NADH-quinone reductase NqrE or Nqr5 SW:NQRE_VIBAL (Q56589) (198 aa) fasta scores: E(): 0%2C 84.8%25 id in 198 aa%2C and to Vibrio cholerae Na+-translocating NADH-quinone reductase NqrE or Vc2291 TR:Q9X4Q7 (EMBL:AF117331) (198 aa) fasta scores: E(): 0%2C 84.8%25 id in 198 aa. Similar to YPO1935 (66.0%25 identity in 197 aa overlap) gene gene3183 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3236 YPO3237 YPO3237 nqr4 nqr4 3602499 3603128 - Na+-translocating NADH-quinone reductase subunit D Similar to Vibrio alginolyticus unidentified protein of Na+-translocating NADH-quinone reductase NqrD or Nqr4 TR:Q57095 (EMBL:Z37111) (210 aa) fasta scores: E(): 0%2C76.3%25 id in 207 aa%2C and to Vibrio cholerae NqrD or Vc2292 TR:Q9X4Q6 (EMBL:AF117331) (210 aa) fasta scores: E(): 0%2C76.8%25 id in 207 aa gene gene3184 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3237 YPO3238 YPO3238 nqr3 nqr3 3603121 3603921 - Na+-translocating NADH-quinone reductase subunit C Similar to Vibrio alginolyticus gamma subunit of Na+-translocating NADH-quinone reductase subunit C NqrC or Nqr3 TR:Q56582 (EMBL:AB008030) (256 aa) fasta scores: E(): 0%2C 59.0%25 id in 256 aa%2C and to Vibrio cholerae NqrC or Vc2293 TR:Q9X4Q5 (EMBL:AF117331) (257 aa) fasta scores: E(): 0%2C 59.8%25 id in 256 aa gene gene3185 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3238 YPO3239 YPO3239 nqr2 nqr2 3603911 3605152 - NADH-ubiquinone oxidoreductase subunit B Similar to Vibrio alginolyticus NADH-ubiquinone oxidoreductase subunit B NqrB or Nqr2 TR:Q56587 (EMBL:Z37111) (426 aa) fasta scores: E(): 0%2C 76.9%25 id in 411 aa%2C and to Vibrio harveyi NqrB TR:Q9RFW0 (EMBL:AF165980) (413 aa) fasta scores: E(): 0%2C 76.3%25 id in 409 aa gene gene3186 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3239 YPO3240 YPO3240 nqr1 nqr1 3605156 3606499 - NADH-ubiquinone oxidoreductase subunit A Similar to Vibrio alginolyticus NADH-ubiquinone oxidoreductase subunit A NqrA or Nqr1 TR:Q56586 (EMBL:Z37111) (446 aa) fasta scores: E(): 0%2C 63.8%25 id in 447 aa%2C and to Vibrio harveyi NqrA TR:Q9RFW1 (EMBL:AF165980) (446 aa) fasta scores: E(): 0%2C 63.5%25 id in 447 aa gene gene3187 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3240 YPO3241 YPO3241 yafK yafK 3606995 3607735 + putative exported protein Similar to Escherichia coli hypothetical 28.0 kDa protein in gmhA-dinJ intergenic region precursor YafK SW:YAFK_ECOLI (Q47148) (246 aa) fasta scores: E(): 0%2C 58.1%25 id in 246 aa gene gene3188 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3241 YPO3242 YPO3242 YPO3242 3607700 3608473 - conserved hypothetical protein Similar to Escherichia coli hypothetical protein YafJ SW:YAFJ_ECOLI (Q47147) (255 aa) fasta scores: E(): 0%2C86.2%25 id in 254 aa%2C and to Vibrio cholerae hypothetical protein VC2229 TR:Q9KPY3 (EMBL:AE004294) (281 aa) fasta scores: E(): 0%2C 72.0%25 id in 254 aa gene gene3189 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3242 YPO3243 YPO3243 gmhA gmhA 3608676 3609257 - phosphoheptose isomerase Similar to Escherichia coli phosphoheptose isomerase LpcA or GmhA or TfrA SW:LPCA_ECOLI (P51001) (192 aa) fasta scores: E(): 0%2C 90.6%25 id in 192 aa%2C and to Vibrio cholerae phosphoheptose isomerase Vc2230 TR:Q9KPY2 (EMBL:AE004294) (191 aa) fasta scores: E(): 0%2C 84.2%25 id in 190 aa. Similar to YPO3550 (44.0%25 identity in 168 aa overlap) gene gene3190 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3243 YPO3244 YPO3244 yafH yafH 3609497 3611944 + probable acyl-CoA dehydrogenase Similar to Escherichia coli hypothetical 87.0 kDa protein in dnaQ-gmhA intergenic region YafH SW:YAFH_ECOLI (Q47146) (794 aa) fasta scores: E(): 0%2C 81.1%25 id in 795 aa%2Cand to Vibrio cholerae oxidoreductase%2C acyl-CoA dehydrogenase family Vc2231 TR:Q9KPY1 (EMBL:AE004295) (814 aa) fasta scores: E(): 0%2C 67.4%25 id in 815 aa gene gene3191 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3244 YPO3245 YPO3245 YPO3245 3612116 3612862 - hypothetical protein The C-terminal region of this CDS shares some similarity (~~30%25) with a wide range of Escherichia coli adhesin%2C fimbrial%2C pilus and surface antigen regulatory proteins. Similar to Escherichia coli major pilu subunit operon regulatory protein PapB SW:PAPB_ECOLI (P04744) (104 aa) fasta scores: E(): 0.0009%2C 32.1%25 id in 78 aa gene gene3192 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3245 YPO3246 YPO3246 hmwC hmwC 3612864 3614717 - putative accessory processing protein Similar to Haemophilus influenzae putative accessory processing protein Hmw2C TR:Q48030 (EMBL:U08875) (650 aa) fasta scores: E(): 0%2C 43.7%25 id in 625 aa%2C and to H. influenzae HmwC TR:Q9RNI1 (EMBL:AF180945) (650 aa) fasta scores: E(): 0%2C 44.5%25 id in 605 aa. The H. influenzae HmwC protein is involved in the localization of adhesin in the outer membrane gene gene3193 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3246 YPO3247 YPO3247 hmwA hmwA 3614872 3620604 - putative adhesin Similar to Haemophilus influenzae adhesin HmwA TR:Q9RNI2 (EMBL:AF180944) (1557 aa) fasta scores: E(): 4.6e-30%2C 26.0%25 id in 1628 aa%2C and to Haemophilus influenzae adhesin Hmw2A TR:Q48028 (EMBL:U08875) (1477 aa) fasta scores: E(): 6.6e-28%2C 25.7%25 id in 1600 aa gene gene3194 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3247 YPO3248 YPO3248 hxuB hxuB 3620645 3622435 - putative surface-exposed protein Similar to Haemophilus influenzae heme/hemopexin utilization protein B HxuB SW:HXB2_HAEIN (P45356) (565 aa) fasta scores: E(): 0%2C 29.6%25 id in 568 aa%2C and to Haemophilus influenzae putative accessory processing protein Hmw2B TR:Q48029 (EMBL:U08875) (545 aa) fasta scores: E(): 1.2e-07%2C 20.3%25 id in 517 aa gene gene3195 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3248 YPO3249 YPO3249 YPO3249 3623524 3624816 - putative amino acid hydrolase Similar to Bacillus stearothermophilus N-carbamoyl-L-amino acid amidohydrolase AmaB SW:AMB1_BACST (P37113) (409 aa) fasta scores: E(): 0%2C 40.7%25 id in 391 aa%2Cand to Deinococcus radiodurans N-carbamyl-L-amino acid amidohydrolase Dr1154 TR:Q9RV75 (EMBL:AE001965) (416 aa) fasta scores: E(): 0%2C 41.5%25 id in 405 aa gene gene3196 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3249 YPO3250 YPO3250 YPO3250 3624816 3625250 - putative amino acid transaminase (pseudogene) This CDS is disrupted by the insertion of the insertion sequence IS100. The full length CDS is similar to Bacillus halodurans aspartate transaminase Bh0762 TR:Q9KET7 (EMBL:AP001509) (416 aa) fasta scores: E(): 0%2C 52.5%25 id in 406 aa%2C and to Xenopus laevis putative alanine:glyoxylate aminotransferase Agt TR:CAC17015 (EMBL:AJ278065) (415 aa) fasta scores: E(): 6.2e-27%2C 31.9%25 id in 392 aa pseudogene gene3197 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3250 YPO3251 YPO3251 y1093 y1093 3625344 3626366 + transposase for insertion sequence IS100 Similar to Escherichia coli transposase for insertion sequence element IS21 IstA SW:ISTA_ECOLI (P15025) (390 aa) fasta scores: E(): 3e-27%2C 33.1%25 id in 329 aa. Identical to the previously sequenced Yersinia pestis%2CYersinia pseudotuberculosis%2C and Escherichia coli pesticin plasmid insertion sequence transposase Y1055 TR:P74993 (EMBL:U59875) (340 aa) fasta scores: E(): 0%2C 100.0%25 id in 340 aa gene gene3198 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3251 YPO3252 YPO3252 ypmt1.57c ypmt1.57c 3626363 3627145 + insertion sequence IS100%2C ATP-binding protein Similar to Escherichia coli insertion sequence IS21 putative ATP-binding protein%2C IstB SW:ISTB_ECOLI (P15026) (265 aa) fasta scores: E(): 0%2C 47.4%25 id in 249 aa. Also almost identical to Yersinia pestis and Escherichia coli putative IS100 transposase ypmt1.57c TR:Q9R3L5 (EMBL:AL117211) (260 aa) fasta scores: E(): 0%2C 99.6%25 id in 260 aa. gene gene3199 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3252 YPO3254 YPO3254 YPO3254 3628151 3628897 - putative amino acid ABC transporter%2C ATP-binding protein Similar to Bacillus stearothermophilus glutamine transport ATP-binding protein GlnQ SW:GLNQ_BACST (P27675) (242 aa) fasta scores: E(): 0%2C 54.0%25 id in 239 aa%2C and to Archaeoglobus fulgidus glutamine ABC transporter%2CATP-binding protein Af0680 TR:O29577 (EMBL:AE001058) (242 aa) fasta scores: E(): 0%2C 55.6%25 id in 241 aa gene gene3200 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3254 YPO3255 YPO3255 YPO3255 3628878 3629531 - putative amino acid ABC transporter%2C permease protein Similar to Escherichia coli hypothetical amino-acid ABC transporter permease protein YecS SW:YECS_ECOLI (P76315) (222 aa) fasta scores: E(): 6.3e-21%2C 36.3%25 id in 204 aa%2C and to Thermotoga maritima amino acid ABC transporter%2C permease protein Tm0592 TR:Q9WZ61 (EMBL:AE001734) (216 aa) fasta scores: E(): 4.3e-20%2C 36.3%25 id in 201 aa gene gene3201 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3255 YPO3256 YPO3256 YPO3256 3629528 3630196 - putative amino acid ABC transporter%2C permease protein Similar to Thermotoga maritima amino acid ABC transporter%2C permease protein Tm0592 TR:Q9WZ61 (EMBL:AE001734) (216 aa) fasta scores: E(): 1.3e-25%2C 43.6%25 id in 204 aa%2C and to Deinococcus radiodurans amino acid ABC transporter%2C permease protein Dr1028 TR:Q9RVK0 (EMBL:AE001954) (216 aa) fasta scores: E(): 8.4e-24%2C 39.6%25 id in 202 aa gene gene3202 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3256 YPO3257 YPO3257 YPO3257 3630209 3630997 - putative amino acid ABC transporter%2C periplasmic protein Similar to Helicobacter pylori amino acid binding protein CjaA TR:Q9RNF9 (EMBL:AF181878) (287 aa) fasta scores: E(): 2.5e-18%2C 32.5%25 id in 228 aa%2C and to Pseudomonas aeruginosa probable binding protein component of ABC transporter Pa2204 TR:AAG05592 (EMBL:AE004647) (268 aa) fasta scores: E(): 1.1e-19%2C 34.5%25 id in 252 aa gene gene3203 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3257 YPO3258 YPO3258 YPO3258 3631108 3631323 - putative membrane protein no significant database matches gene gene3204 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3258 YPO3259 YPO3259 YPO3259 3631325 3632170 - putative rpiR-family transcriptional regulatory protein Similar to Pseudomonas aeruginosa hypothetical protein PA5506 TR:AAG08891 (EMBL:AE004963) (285 aa) fasta scores: E(): 2.8e-11%2C 26.0%25 id in 281 aa%2C and to Bacillus halodurans BH2940 protein TR:Q9K8R3 (EMBL:AP001517) (284 aa) fasta scores: E(): 6.7e-11%2C 23.1%25 id in 277 aa gene gene3205 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3259 YPO3260 YPO3260 YPO3260 3632468 3632671 + hypothetical protein no significant database hits gene gene3206 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3260 YPO3261 YPO3261 YPO3261 3632668 3634065 + probable amidase Similar to Mycobacterium smegmatis nicotinamidase/pyrazinamidase PzaA TR:Q9ZHK8 (EMBL:AF058285) (468 aa) fasta scores: E(): 0%2C 34.4%25 id in 453 aa%2C and to Rhodococcus sp. enantiomerase-selective amidase AmdA TR:Q53116 (EMBL:M74531) (462 aa) fasta scores: E(): 0%2C 33.8%25 id in 461 aa gene gene3207 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3261 YPO3262 YPO3262 YPO3262 3634094 3634561 + hypothetical protein no significant database hits gene gene3208 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3262 YPO3263 YPO3263 YPO3263 3634789 3635988 + probable sugar transporter Similar to Escherichia coli from bases 2796594 to 2807377 TR:P76629 (EMBL:AE000352) (305 aa) fasta scores: E(): 0%2C 71.5%25 id in 305 aa%2C and to Pseudomonas aeruginosa hypothetical protein Pa1352 TR:AAG04741 (EMBL:AE004564) (403 aa) fasta scores: E(): 0%2C 45.3%25 id in 382 aa gene gene3209 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3263 YPO3264 YPO3264 YPO3264 3636148 3636921 + putative amino acid transporter Similar to Bacillus subtilis branched-chain amino acid transport protein AzlC SW:AZLC_BACSU (O07942) (254 aa) fasta scores: E(): 1.4e-11%2C 28.2%25 id in 245 aa%2C and to Escherichia coli hypothetical 26.1 kDa protein in proX-mprA intergenic region YgaZ SW:YGAZ_ECOLI (P76630) (245 aa) fasta scores: E(): 0%2C 70.9%25 id in 237 aa gene gene3210 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3264 YPO3265 YPO3265 YPO3265 3636918 3637259 + putative membrane protein Similar to Escherichia coli hypothetical 12.0 kDa protein in proX-emrR intergenic region YgaH SW:YGAH_ECOLI (P43667) (111 aa) fasta scores: E(): 7.9e-22%2C 54.4%25 id in 114 aa gene gene3211 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3265 YPO3266 YPO3266 emrR emrR 3637431 3637943 + MarR-family transcriptional regulatory protein Similar to Escherichia coli transcriptional repressor MprA or EmrR SW:MPRA_ECOLI (P24201) (176 aa) fasta scores: E(): 0%2C 80.1%25 id in 166 aa%2C and to Salmonella typhimurium negative regulator of emr locus EmrR TR:P74870 (EMBL:U62713) (149 aa) fasta scores: E(): 0%2C 77.7%25 id in 148 aa gene gene3212 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3266 YPO3267 YPO3267 emrA emrA 3638327 3639499 + multidrug resistance protein A Similar to Escherichia coli multidrug resistance protein A EmrA SW:EMRA_ECOLI (P27303) (390 aa) fasta scores: E(): 0%2C 69.7%25 id in 389 aa%2C and to Haemophilus influenzae multidrug resistance protein A homolog EmrA or Hi0898 SW:EMRA_HAEIN (P44928) (390 aa) fasta scores: E(): 0%2C 47.8%25 id in 389 aa gene gene3213 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3267 YPO3268 YPO3268 emrB emrB 3639538 3641073 + multidrug resistance protein B Similar to Escherichia coli multidrug resistance protein B EmrB SW:EMRB_ECOLI (P27304) (512 aa) fasta scores: E(): 0%2C 84.1%25 id in 509 aa%2C and to Haemophilus influenzae multidrug resistance protein B homolog Emrb or hi0897 SW:EMRB_HAEIN (P44927) (510 aa) fasta scores: E(): 0%2C 70.2%25 id in 497 aa gene gene3214 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3268 YPO3269 YPO3269 yfiF yfiF 3641196 3642362 - putative tRNA/rRNA methyltransferase Similar to Escherichia coli hypothetical tRNA/rRNA methyltransferase YfiF SW:YFIF_ECOLI (P33635) (345 aa) fasta scores: E(): 0%2C 60.1%25 id in 388 aa%2C and to Haemophilus influenzae hypothetical tRNA/rRNA methyltransferase Hi0424 SW:YFIF_HAEIN (P44703) (351 aa) fasta scores: E(): 6.8e-33%2C 34.8%25 id in 359 aa. This CDS contains a large insertion at its N-terminal end relative to E. coli gene gene3215 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3269 YPO3270 YPO3270 trxC trxC 3642614 3643051 + thioredoxin 2 Similar to Escherichia coli thioredoxin 2 TrxC SW:THI2_ECOLI (P33636) (139 aa) fasta scores: E(): 0%2C 77.7%25 id in 139 aa%2C and to Vibrio cholerae thioredoxin 2 Vca0752 TR:Q9KLJ2 (EMBL:AE004403) (144 aa) fasta scores: E(): 0%2C53.6%25 id in 140 aa gene gene3216 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3270 YPO3271 YPO3271 YPO3271 3643221 3643970 + conserved hypothetical protein Similar to Escherichia coli hypothetical protein YfiP SW:YFIP_ECOLI (Q47319) (232 aa) fasta scores: E(): 0%2C61.6%25 id in 232 aa%2C and to Pseudomonas putida hypothetical protein TR:Q9KHT4 (EMBL:AF249735) (236 aa) fasta scores: E(): 0%2C 50.2%25 id in 229 aa gene gene3217 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3271 YPO3272 YPO3272 yfiQ yfiQ 3644013 3646655 + putative acetyltransferase Similar to Escherichia coli hypothetical 98.0 kDa protein in ung-pssA intergenic region YfiQ SW:YFIQ_ECOLI (P76594) (886 aa) fasta scores: E(): 0%2C 75.5%25 id in 880 aa%2Cand to Vibrio cholerae hypothetical protein Vca0574 TR:Q9KM15 (EMBL:AE004388) (893 aa) fasta scores: E(): 0%2C55.2%25 id in 889 aa%2C and to Entamoeba histolytica acetyl-CoA synthetase TR:Q9NAT4 (EMBL:AF286346) (713 aa) fasta scores: E(): 0%2C 34.0%25 id in 702 aa gene gene3218 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3272 YPO3273 YPO3273 pss pss 3646828 3648186 + CDP-diacylglycerol--serine O-phosphatidyltransferase Similar to Escherichia coli CDP-diacylglycerol--serine O-phosphatidyltransferase PssA or Pss SW:PSS_ECOLI (P23830) (451 aa) fasta scores: E(): 0%2C74.1%25 id in 451 aa%2C and to Haemophilus influenzae CDP-diacylglycerol--serine O-phosphatidyltransferase PssA or Hi0425 SW:PSS_HAEIN (P44704) (455 aa) fasta scores: E(): 0%2C 50.1%25 id in 457 aa gene gene3219 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3273 YPO3274 YPO3274 YPO3274 3648248 3648589 + putative lipoprotein Similar to Pseudomonas aeruginosa hypothetical protein Pa0488 TR:AAG03877 (EMBL:AE004486) (106 aa) fasta scores: E(): 3.9e-23%2C 55.7%25 id in 106 aa%2C and to Escherichia coli hypothetical 9.9 kDa protein in pssA-kgtP intergenic region YfiM SW:YFIM_ECOLI (P46126) (90 aa) fasta scores: E(): 8.3e-22%2C 59.3%25 id in 86 aa gene gene3220 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3274 YPO3275 YPO3275 clpB clpB 3654692 3657265 - Clp ATPase Similar to Escherichia coli ClpB protein%2C which is thought to form part of a multi-chaperone system supressing protein aggregation%2C SW:CLPB_ECOLI (P03815) (857 aa) fasta scores: E(): 0%2C 86.6%25 id in 857 aa and to secondary endosymbiont of Glycaspis brimblecombei ClpB protease TR:Q9KHC1 (EMBL:AF263561) (857 aa) fasta scores: E(): 0%2C83.4%25 id in 857 aa gene gene3224 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3275 YPO3276 YPO3276 YPO3276 3657395 3658126 - conserved hypothetical protein Similar to Escherichia coli hypothetical protein YfiH SW:YFIH_ECOLI (P33644) (243 aa) fasta scores: E(): 0%2C62.6%25 id in 243 aa%2C and to secondary endosymbiont of Glycaspis brimblecombei hypothetical protein YfiH TR:Q9KHC2 (EMBL:AF263561) (244 aa) fasta scores: E(): 0%2C 59.3%25 id in 243 aa gene gene3225 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3276 YPO3277 YPO3277 rluD rluD 3658128 3659105 - ribosomal large subunit pseudouridine synthase D Similar to Escherichia coli ribosomal large subunit pseudouridine synthase D RluD or SfhB SW:RLUD_ECOLI (P33643) (326 aa) fasta scores: E(): 0%2C 84.0%25 id in 325 aa%2Cand to secondary endosymbiont of Glycaspis brimblecombei 23S rRNA pseudouridine synthase RluD TR:Q9KHC3 (EMBL:AF263561) (314 aa) fasta scores: E(): 0%2C 79.6%25 id in 313 aa gene gene3226 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3277 YPO3278 YPO3278 yfiO yfiO 3659241 3659972 + putative lipoprotein Similar to Escherichia coli hypothetical 27.8 kDa lipoprotein in rluD-pheL intergenic region precursor YfiO SW:YFIO_ECOLI (P77146) (245 aa) fasta scores: E(): 0%2C 84.2%25 id in 241 aa%2C and to Vibrio cholerae hypothetical protein Vc0708 TR:Q9KU21 (EMBL:AE004157) (253 aa) fasta scores: E(): 0%2C 53.8%25 id in 240 aa gene gene3227 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3278 YPO3279 YPO3279 yfiA yfiA 3660327 3660689 + putative sigma 54 modulation protein Similar to Escherichia coli protein YfiA SW:YFIA_ECOLI (P11285) (112 aa) fasta scores: E(): 1.3e-31%2C79.5%25 id in 112 aa%2C and to Pasteurella multocida hypothetical 12.0 kDa protein Pm0092 TR:AAK02176 (EMBL:AE006044) (105 aa) fasta scores: E(): 5.9e-25%2C 68.3%25 id in 104 aa gene gene3228 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3279 YPO3280 YPO3280 tnp tnp 3661020 3661478 - transposase for the IS1541 insertion element Similar to Salmonella typhimurium%2C and Salmonella typhi transposase for insertion sequence IS200 TnpA SW:T200_SALTY (Q57334) (152 aa) fasta scores: E(): 0%2C 94.1%25 id in 152 aa. Identical to the Yersinia pseudotuberculosis IS1541-like element transposase Tnp TR:Q9X9F5 (EMBL:AJ238014) (152 aa) fasta scores: E(): 0%2C 100.0%25 id in 152 aa gene gene3229 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3280 YPO3281 YPO3281 pheA pheA 3664653 3664877 + P-protein [includes: chorismate mutase and prephenate dehydratase] (pseudogene) This CDS is disrupted by the insertion of the insertion sequence IS100. The full length CDS is similar to Escherichia coli P-protein [includes: chorismate mutase and prephenate dehydratase] PheA SW:PHEA_ECOLI (P07022) (386 aa) fasta scores: E(): 0%2C 76.8%25 id in 383 aa%2C and to Erwinia herbicola p-protein [includes: chorismate mutase pheA SW:PHEA_ERWHE (Q02286) (387 aa) fasta scores: E(): 0%2C77.5%25 id in 382 aa pseudogene gene3230 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3281 YPO3282 YPO3282 y1093 y1093 3662781 3663803 + transposase for insertion sequence IS100 Similar to Escherichia coli transposase for insertion sequence element IS21 IstA SW:ISTA_ECOLI (P15025) (390 aa) fasta scores: E(): 3e-27%2C 33.1%25 id in 329 aa. Identical to the previously sequenced Yersinia pestis%2CYersinia pseudotuberculosis%2C and Escherichia coli pesticin plasmid insertion sequence transposase Y1055 TR:P74993 (EMBL:U59875) (340 aa) fasta scores: E(): 0%2C 100.0%25 id in 340 aa gene gene3231 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3282 YPO3283 YPO3283 ypmt1.57c ypmt1.57c 3663800 3664582 + insertion sequence IS100%2C ATP-binding protein Similar to Escherichia coli insertion sequence IS21 putative ATP-binding protein%2C IstB SW:ISTB_ECOLI (P15026) (265 aa) fasta scores: E(): 0%2C 47.4%25 id in 249 aa. Also almost identical to Yersinia pestis and Escherichia coli putative IS100 transposase ypmt1.57c TR:Q9R3L5 (EMBL:AL117211) (260 aa) fasta scores: E(): 0%2C 99.6%25 id in 260 aa. gene gene3232 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3283 YPO3285 YPO3285 tyrA tyrA 3664982 3666103 - T-protein [includes: chorismate mutase and prephenate dehydrogenase] Similar to Escherichia coli T-protein [includes: chorismate mutase and prephenate dehydrogenase] TyrA SW:TYRA_ECOLI (P07023) (373 aa) fasta scores: E(): 0%2C 86.9%25 id in 373 aa%2C and to Erwinia herbicola T-protein [includes: chorismate mutase and prephenate dehydrogenase] TyrA SW:TYRA_ERWHE (Q02287) (373 aa) fasta scores: E(): 0%2C 86.0%25 id in 372 aa gene gene3233 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3285 YPO3286 YPO3286 aroF aroF 3666116 3667186 - phospho-2-dehydro-3-deoxyheptonate aldolase%2Ctyr-sensitive Similar to Escherichia coli phospho-2-dehydro-3-deoxyheptonate aldolase%2C tyr-sensitive AroF SW:AROF_ECOLI (P00888) (356 aa) fasta scores: E(): 0%2C79.8%25 id in 356 aa%2C and to Salmonella typhimurium phospho-2-dehydro-3-deoxyheptonate aldolase%2C tyr-sensitive AroF SW:AROF_SALTY (P21307) (356 aa) fasta scores: E(): 0%2C78.1%25 id in 356 aa. Similar to YPO2411 (53.4%25 identity in 343 aa overlap) and to YPO1130 (52.5%25 identity in 316 aa overlap) gene gene3234 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3286 YPO3287 YPO3287 YPO3287 3667419 3668135 + two-component system response regulator Similar to Vibrio cholerae response regulator VC0693 TR:Q9KU36 (EMBL:AE004155) (237 aa) fasta scores: E(): 0%2C56.4%25 id in 236 aa%2C and to Escherichia coli hypothetical protein YehT SW:YEHT_ECOLI (P33356) (244 aa) fasta scores: E(): 0%2C 57.7%25 id in 239 aa gene gene3235 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3287 YPO3288 YPO3288 dcuB dcuB 3668564 3669908 + anaerobic C4-dicarboxylate transporter (pseudogene) Similar to Escherichia coli anaerobic C4-dicarboxylate transporter DcuB or GenF SW:DCUB_ECOLI (P14409) (446 aa) fasta scores: E(): 0%2C 57.8%25 id in 446 aa%2Cand to Vibrio cholerae anaerobic C4-dicarboxylate transporter Vca0205 TR:Q9KMW3 (EMBL:AE004360) (442 aa) fasta scores: E(): 0%2C 49.1%25 id in 442 aa. This CDS contains two frameshifts after codons 219 and 341. The sequence has been checked and is believed to be correct pseudogene gene3236 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3288 YPO3290 YPO3290 ydiY ydiY 3670231 3670998 + putative exported protein Similar to Escherichia coli hypothetical 27.6 kDa protein in arpB-pfkB intergenic region precursor YdiY SW:YDIY_ECOLI (P76206) (252 aa) fasta scores: E(): 0%2C 54.2%25 id in 253 aa gene gene3237 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3290 YPO3291 YPO3291 tnp tnp 3671301 3671759 - transposase for the IS1541 insertion element Similar to Salmonella typhimurium and Salmonella typhi transposase for insertion sequence IS200%2C TnpA%2CSW:TNPA_SALTY (Q57334) (152 aa) fasta scores: E(): 0%2C 93.4%25 id in 152 aa. Almost identical to the Yersinia pseudotuberculosis IS1541-like element transposase Tnp TR:Q9X9F5 (EMBL:AJ238014) (152 aa) fasta scores: E(): 0%2C99.3%25 id in 152 aa gene gene3238 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3291 YPO3292 YPO3292 rplS rplS 3671971 3672318 - 50S ribosomal protein L19 Similar to Escherichia coli 50S ribosomal protein L19 RplS SW:RL19_ECOLI (P02420) (114 aa) fasta scores: E(): 0%2C 93.8%25 id in 113 aa%2C and to Serratia marcescens 50S ribosomal protein L19 RplS SW:RL19_SERMA (P36243) (117 aa) fasta scores: E(): 0%2C 96.5%25 id in 113 aa gene gene3239 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3292 YPO3293 YPO3293 trmD trmD 3672399 3673139 - tRNA (guanine-N1)-methyltransferase Similar to Escherichia coli tRNA (guanine-N1)-methyltransferase TrmD SW:TRMD_ECOLI (P07020) (255 aa) fasta scores: E(): 0%2C 91.4%25 id in 244 aa%2C and to Serratia marcescens tRNA (guanine-N1)-methyltransferase TrmD SW:TRMD_SERMA (P36244) (255 aa) fasta scores: E(): 0%2C94.7%25 id in 245 aa gene gene3240 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3293 YPO3294 YPO3294 rimM rimM 3673178 3673726 - 16S rRNA processing protein Similar to Escherichia coli 16S rRNA processing protein RimM SW:RIMM_ECOLI (P21504) (182 aa) fasta scores: E(): 0%2C 81.3%25 id in 182 aa%2C and to Salmonella typhimurium 16S rRNA processing protein RimM SW:RIMM_SALTY (P36246) (183 aa) fasta scores: E(): 0%2C 81.4%25 id in 183 aa gene gene3241 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3294 YPO3295 YPO3295 rpsP rpsP 3673748 3673996 - 30S ribosomal protein S16 Similar to Escherichia coli 30S ribosomal protein S16 RpsP SW:RS16_ECOLI (P02372) (82 aa) fasta scores: E(): 5.4e-26%2C 79.3%25 id in 82 aa%2C and to Salmonella typhimurium 30S ribosomal protein S16 RpsP SW:RS16_SALTY (P36242) (82 aa) fasta scores: E(): 8e-27%2C 81.7%25 id in 82 aa gene gene3242 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3295 YPO3296 YPO3296 ffh ffh 3674224 3675585 - signal recognition particle protein Similar to Escherichia coli signal recognition particle protein Ffh SW:SR54_ECOLI (P07019) (453 aa) fasta scores: E(): 0%2C 89.0%25 id in 453 aa%2C and to Haemophilus influenzae signal recognition particle protein Ffh or Hi0106 SW:SR54_HAEIN (P44518) (462 aa) fasta scores: E(): 0%2C 79.4%25 id in 452 aa gene gene3243 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3296 YPO3297 YPO3297 corE corE 3675649 3676542 + putative membrane protein Similar to Salmonella typhimurium CorE TR:Q9X619 (EMBL:AF130857) (288 aa) fasta scores: E(): 0%2C 73.7%25 id in 262 aa%2C and to Escherichia coli from bases 2744073 to 2755344 TR:P76599 (EMBL:AE000347) (288 aa) fasta scores: E(): 0%2C 74.8%25 id in 262 aa gene gene3244 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3297 YPO3298 YPO3298 b2612/b2613 b2612/b2613 3676611 3677894 + putative membrane protein Similar to Escherichia coli hypothetical 46.4 kDa protein in ffh-grpE intergenic region YfjD or B2612/B2613 SW:YFJD_ECOLI (P37908) (428 aa) fasta scores: E(): 0%2C 77.2%25 id in 425 aa%2C and to Vibrio cholerae putative hemolysin Vc0558 TR:Q9KUG3 (EMBL:AE004141) (426 aa) fasta scores: E(): 0%2C 63.9%25 id in 418 aa gene gene3245 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3298 YPO3299 YPO3299 tnp tnp 3678032 3678490 - transposase for the IS1541 insertion element Similar to Salmonella typhimurium and Salmonella typhi transposase for insertion sequence IS200%2C TnpA%2CSW:TNPA_SALTY (Q57334) (152 aa) fasta scores: E(): 0%2C 93.4%25 id in 152 aa. Almost identical to the Yersinia pseudotuberculosis IS1541-like element transposase Tnp TR:Q9X9F5 (EMBL:AJ238014) (152 aa) fasta scores: E(): 0%2C99.3%25 id in 152 aa gene gene3246 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3299 YPO3300 YPO3300 luxS luxS 3678694 3679209 - autoinducer-2 production protein Similar to Vibrio harveyi bioluminescence-regulating%2C quorum sensing autoinducer-2 production protein LuxS SW:LUXS_VIBHA (Q9Z5X1) (171 aa) fasta scores: E(): 0%2C 77.1%25 id in 170 aa%2C and to Escherichia coli autoinducer-2 production protein LuxS SW:LUXS_ECOLI (P45578) (170 aa) fasta scores: E(): 0%2C 88.2%25 id in 170 aa. The molecule produced by this class of quorum signal generators is distinct from the the N-acylhomoserine lactones class of quourm signal molecules (autoinducer-1). gene gene3247 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3300 YPO3301 YPO3301 b2688 b2688 3679377 3680936 - glutamate--cysteine ligase Similar to Escherichia coli glutamate--cysteine ligase GshA or Gsh-I or B2688 SW:GSH1_ECOLI (P06980) (518 aa) fasta scores: E(): 0%2C 74.3%25 id in 518 aa%2C and to Salmonella typhimurium glutamate--cysteine ligase GshA SW:GSH1_SALTY (O68838) (518 aa) fasta scores: E(): 0%2C 76.6%25 id in 518 aa gene gene3248 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3301 YPO3302 YPO3302 yqaA yqaA 3681019 3681447 - putative membrane protein Similar to Escherichia coli hypothetical 15.6 kDa protein in gshA-csrA intergenic region YqaA SW:YQAA_ECOLI (P76631) (142 aa) fasta scores: E(): 6.9e-31%2C 57.7%25 id in 142 aa%2C and to Haemophilus influenzae hypothetical protein Hi0489 SW:YQAA_HAEIN (P44005) (157 aa) fasta scores: E(): 7.6e-18%2C 47.4%25 id in 133 aa gene gene3249 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3302 YPO3303 YPO3303 yqaB yqaB 3681444 3682010 - putative hydrolase Similar to Escherichia coli hypothetical 20.8 kDa protein in gshA-csrA intergenic region YqaB SW:YQAB_ECOLI (P77475) (188 aa) fasta scores: E(): 0%2C 67.0%25 id in 188 aa%2Cand to Haemophilus influenzae hypothetical protein Hi0488 SW:YQAB_HAEIN (P44004) (200 aa) fasta scores: E(): 2.1e-31%2C46.8%25 id in 188 aa gene gene3250 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3303 YPO3304 YPO3304 csrA csrA 3683279 3683464 - carbon storage regulator Similar to Escherichia coli and Salmonella typhimurium carbon storage regulator CsrA SW:CSRA_ECOLI (P31803) (61 aa) fasta scores: E(): 1.2e-22%2C 95.1%25 id in 61 aa%2C and to Erwinia carotovora regulator of extracellular enzymes and pathogenicity RsmA SW:CSRA_ERWCA (Q47620) (61 aa) fasta scores: E(): 2.4e-23%2C 96.7%25 id in 61 aa. CsrA and RsmA are post-transcriptional regulators that bind specific mRNA and alter their stability gene gene3251 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3304 YPO3305 YPO3305 alaS alaS 3683714 3686341 - alanyl-tRNA synthetase Similar to Escherichia coli alanyl-tRNA synthetase AlaS or LovB SW:SYA_ECOLI (P00957) (876 aa) fasta scores: E(): 0%2C 82.4%25 id in 875 aa%2C and to Haemophilus influenzae alanyl-tRNA synthetase AlaS or Hi0814 SW:SYA_HAEIN (P43815) (874 aa) fasta scores: E(): 0%2C 68.8%25 id in 873 aa gene gene3252 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3305 YPO3306 YPO3306 oraA oraA 3686481 3687044 - putative regulatory protein Similar to Escherichia coli regulatory protein OraA or RecX SW:RECX_ECOLI (P33596) (166 aa) fasta scores: E(): 2.5e-20%2C 45.0%25 id in 180 aa%2C and to Vibrio cholerae regulatory protein RecX or VC0544 SW:RECX_VIBCH (Q56647) (152 aa) fasta scores: E(): 1e-11%2C 41.7%25 id in 120 aa. Contains an insertion at the N-terminal half relative to E. coli gene gene3253 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3306 YPO3307 YPO3307 lexB lexB 3687182 3688252 - RecA protein Similar to Escherichia coli and Shigella flexneri RecA protein RecA or LexB or UmuB or RecH or RnmB or Tif or Zab SW:RECA_ECOLI (P03017) (352 aa) fasta scores: E(): 0%2C87.9%25 id in 355 aa%2C and to the previously sequenced Yersinia pestis RecA protein SW:RECA_YERPE (P37858) (356 aa) fasta scores: E(): 0%2C 99.2%25 id in 356 aa gene gene3254 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3307 YPO3308 YPO3308 YPO3308 3688367 3688855 - putative competence-damaged protein Similar to Escherichia coli protein YgaD SW:YGAD_ECOLI (P41053) (165 aa) fasta scores: E(): 0%2C 66.7%25 id in 162 aa%2C and to Enterobacter agglomerans hypothetical protein 1 SW:YGAD_ENTAG (P51967) (164 aa) fasta scores: E(): 0%2C 69.8%25 id in 162 aa gene gene3255 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3308 YPO3309 YPO3309 YPO3309 3689172 3690512 + putative membrane protein Similar to Pseudomonas aeruginosa probable MFS transporter Pa4887 TR:AAG08272 (EMBL:AE004901) (438 aa) fasta scores: E(): 0%2C 46.2%25 id in 437 aa%2C and to Campylobacter jejuni transmembrane transport protein Cj0850C TR:Q9PP73 (EMBL:AL139076) (395 aa) fasta scores: E(): 2.9e-25%2C 27.1%25 id in 376 aa gene gene3256 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3309 YPO3310 YPO3310 YPO3310 3690760 3691704 + putative transcriptional regulatory protein Similar to Bacillus subtilis deoxyribonucleoside regulator DeoR SW:DEOR_BACSU (P39140) (313 aa) fasta scores: E(): 1.1e-25%2C 32.4%25 id in 318 aa%2C and to Klebsiella pneumoniae sorbitol operon regulator SorC SW:SORC_KLEPN (P37078) (315 aa) fasta scores: E(): 1e-22%2C 29.1%25 id in 323 aa gene gene3257 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3310 YPO3311 YPO3311 YPO3311 3691926 3693350 - conserved hypothetical protein Similar to Thermotoga maritima hypothetical protein TM0951 TR:Q9X048 (EMBL:AE001758) (471 aa) fasta scores: E(): 0%2C 51.3%25 id in 466 aa gene gene3258 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3311 YPO3312 YPO3312 YPO3312 3693371 3694858 - glycerol kinase Similar to Bacillus subtilis glycerol kinase GlpK SW:GLPK_BACSU (P18157) (496 aa) fasta scores: E(): 0%2C 40.4%25 id in 492 aa%2C and to Thermotoga maritima glycerol kinase 2 GlpK2 or Tm1430 SW:GLK2_THEMA (Q9X1E4) (496 aa) fasta scores: E(): 0%2C 42.6%25 id in 491 aa gene gene3259 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3312 YPO3313 YPO3313 YPO3313 3694861 3695805 - C-terminal region of transketolase Similar to Methanococcus jannaschii putative transketolase C-terminal section Mj0679 SW:TKTC_METJA (Q58092) (316 aa) fasta scores: E(): 3.8e-30%2C 34.6%25 id in 295 aa%2C and to Bacillus subtilis 1-deoxy-D-xylulose 5-phosphate synthase Dxs SW:DXS_BACSU (P54523) (633 aa) fasta scores: E(): 1.2e-22%2C 34.1%25 id in 249 aa gene gene3260 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3313 YPO3314 YPO3314 YPO3314 3695798 3696628 - putative N-terminal region of transketolase Similar to Methanococcus jannaschii putative transketolase N-terminal section Mj0681 SW:TKTN_METJA (Q58094) (274 aa) fasta scores: E(): 0%2C 40.3%25 id in 273 aa%2Cand to Streptomyces coelicolor transketolase Tkt2 TR:Q9ZC16 (EMBL:AL033505) (615 aa) fasta scores: E(): 1.1e-27%2C 38.4%25 id in 271 aa gene gene3261 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3314 YPO3315 YPO3315 rbsC rbsC 3696884 3698029 - putative sugar ABC transporter%2C permease protein Similar to Escherichia coli ribose transport system permease protein RbsC SW:RBSC_ECOLI (P04984) (321 aa) fasta scores: E(): 0%2C 40.8%25 id in 316 aa%2C and to Bacillus subtilis membrane transport protein RbsC TR:P96731 (EMBL:Z92953) (322 aa) fasta scores: E(): 0%2C 43.9%25 id in 321 aa gene gene3262 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3315 YPO3316 YPO3316 YPO3316 3698026 3699549 - putative sugar ABC transporter%2C ATP-binding protein Similar to Escherichia coli L-arabinose transport ATP-binding protein AraG SW:ARAG_ECOLI (P08531) (504 aa) fasta scores: E(): 0%2C 39.7%25 id in 486 aa%2C and to E. coli D-xylose transport ATP-binding protein XylG SW:XYLG_ECOLI (P37388) (513 aa) fasta scores: E(): 0%2C 37.3%25 id in 501 aa%2Cand to E. coli ribose transport ATP-binding protein RbsA SW:RBSA_ECOLI (P04983) (501 aa) fasta scores: E(): 0%2C 37.2%25 id in 497 aa%2C and to Escherichia coli galactoside transport ATP-binding protein MglA SW:MGLA_ECOLI (P23199) (506 aa) fasta scores: E(): 0%2C 38.5%25 id in 496 aa gene gene3263 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3316 YPO3317 YPO3317 YPO3317 3699549 3700166 - putative lipoprotein Identical to the previously sequenced Yersinia pestis hypothetical 22.2 kDa protein TR:Q9X6A8 (EMBL:AF135170) (205 aa) fasta scores: E(): 0%2C 100.0%25 id in 205 aa gene gene3264 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3317 YPO3318 YPO3318 YPO3318 3700259 3701233 - putative sugar ABC transporter%2C periplasmic protein Similar to Escherichia coli D-ribose-binding periplasmic protein precursor RbsB or RbsP or PrlB SW:RBSB_ECOLI (P02925) (296 aa) fasta scores: E(): 1.2e-23%2C31.7%25 id in 300 aa%2C and identical to the previously sequenced Yersinia pestis D-ribose binding protein RbsB TR:Q9X6A9 (EMBL:AF135170) (324 aa) fasta scores: E(): 0%2C100.0%25 id in 324 aa gene gene3265 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3318 YPO3319 YPO3319 katY katY 3701736 3703949 + catalase-peroxidase Similar to Escherichia coli EHEC-catalase/peroxidase precursor KatP TR:P77038 (EMBL:X89017) (736 aa) fasta scores: E(): 0%2C 75.3%25 id in 736 aa%2C and identical to the previously sequenced Yersinia pestis peroxidase/catalase katY SW:CATA_YERPE (Q9X6B0) (737 aa) fasta scores: E(): 0%2C100.0%25 id in 737 aa gene gene3266 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3319 YPO3320 YPO3320 cybC cybC 3704026 3704409 + putative cytochrome B562 Similar to Escherichia coli soluble cytochrome B562 precursor CybC SW:C562_ECOLI (P00192) (128 aa) fasta scores: E(): 4.2e-19%2C 46.9%25 id in 128 aa%2C and identical to the previously sequenced Yersinia pestis cytochrome C CybC TR:Q9X6B1 (EMBL:AF135170) (127 aa) fasta scores: E(): 0%2C100.0%25 id in 127 aa gene gene3267 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3320 YPO3321 YPO3321 cybB cybB 3704557 3705087 + probable cytochrome B561 Similar to Escherichia coli cytochrome B561 CybB SW:C561_ECOLI (P08732) (176 aa) fasta scores: E(): 0%2C 66.3%25 id in 175 aa%2C and identical to the previously sequenced Yersinia pestis probable cytochrome B561 CybB SW:C561_YERPE (Q9X6B2) (176 aa) fasta scores: E(): 0%2C 100.0%25 id in 176 aa gene gene3268 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3321 YPO3322 YPO3322 YPO3322 3705344 3706054 - conserved hypothetical protein Similar to Escherichia coli hypothetical protein precursor YnfI SW:YNFI_ECOLI (P76174) (207 aa) fasta scores: E(): 1.1e-29%2C 46.1%25 id in 217 aa%2C and identical to the previously sequenced Yersinia pestis hypothetical protein TR:Q9X6B3 (EMBL:AF135170) (236 aa) fasta scores: E(): 0%2C 100.0%25 id in 236 aa gene gene3269 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3322 YPO3323 YPO3323 dmsC dmsC 3706200 3707060 - anaerobic dimethyl sulfoxide reductase chain C Similar to Escherichia coli anaerobic dimethyl sulfoxide reductase chain C DmsC SW:DMSC_ECOLI (P18777) (287 aa) fasta scores: E(): 0%2C 66.7%25 id in 285 aa%2C and identical to the previously sequenced to Yersinia pestis dimethyl sulfoxide reductase subunit C DmsC TR:Q9X6B4 (EMBL:AF135170) (286 aa) fasta scores: E(): 0%2C 100.0%25 id in 286 aa gene gene3270 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3323 YPO3324 YPO3324 dmsB dmsB 3707062 3707679 - anaerobic dimethyl sulfoxide reductase chain B Similar to Escherichia coli anaerobic dimethyl sulfoxide reductase chain B DmsB SW:DMSB_ECOLI (P18776) (204 aa) fasta scores: E(): 0%2C 85.3%25 id in 204 aa%2C and identical to the previously sequenced Yersinia pestis dimethyl sulfoxide reductase subunit B DmsB TR:Q9X6B5 (EMBL:AF135170) (205 aa) fasta scores: E(): 0%2C 100.0%25 id in 205 aa. Similar to YPO2966 (63.5%25 identity in 203 aa overlap) gene gene3271 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3324 YPO3325 YPO3325 dmsA dmsA 3707691 3710141 - anaerobic dimethyl sulfoxide reductase chain A Similar to Escherichia coli anaerobic dimethyl sulfoxide reductase chain A precursor DmsA SW:DMSA_ECOLI (P18775) (785 aa) fasta scores: E(): 0%2C 81.6%25 id in 815 aa%2Cand identical to the previously sequenced Yersinia pestis dimethyl sulfoxide reductase subunit A DmsA TR:Q9X6B6 (EMBL:AF135170) (823 aa) fasta scores: E(): 0%2C 100.0%25 id in 816 aa. Similar to YPO2965 (50.5%25 identity in 823 aa overlap) gene gene3272 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3325 YPO3326 YPO3326 araD araD 3710604 3711299 - L-ribulose-5-phosphate 4-epimerase Similar to Escherichia coli L-ribulose-5-phosphate 4-epimerase AraD SW:ARAD_ECOLI (P08203) (231 aa) fasta scores: E(): 0%2C 73.6%25 id in 231 aa%2C and identical to the previously sequenced Yersinia pestis L-ribulose-phosphate 4-epimerase AraD TR:Q9X6B7 (EMBL:AF135170) (256 aa) fasta scores: E(): 0%2C 100.0%25 id in 231 aa. Similar to YPO2230 (69.9%25 identity in 249 aa overlap) gene gene3273 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3326 YPO3327 YPO3327 fucR fucR 3712002 3712811 + putative deoR-family regulatory protein Similar to Escherichia coli L-fucose operon activator FucR SW:FUCR_ECOLI (P11554) (243 aa) fasta scores: E(): 5.2e-20%2C 35.6%25 id in 247 aa%2C and to Bacillus halodurans transcriptional regulator BH1553 TR:Q9KCL8 (EMBL:AP001512) (251 aa) fasta scores: E(): 6e-22%2C 36.0%25 id in 264 aa gene gene3274 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3327 YPO3328 YPO3328 YPO3328 3712873 3713976 + putative sugar ABC transporter%2C periplasmic protein Similar to Escherichia coli from bases 1598243 to 1608845 TR:P76142 (EMBL:AE000249) (340 aa) fasta scores: E(): 1.7e-12%2C 27.1%25 id in 306 aa%2C and to Streptomyces coelicolor putative secreted solute-binding lipoprotein Scf43.19C TR:Q9RD69 (EMBL:AL136502) (360 aa) fasta scores: E(): 1.6e-13%2C 26.3%25 id in 319 aa%2C and to Thermotoga maritima sugar ABC transporter%2C periplasmic sugar-binding protein Tm0114 TR:Q9WXW9 (EMBL:AE001697) (335 aa) fasta scores: E(): 2.9e-10%2C 25.4%25 id in 351 aa gene gene3275 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3328 YPO3329 YPO3329 tnp tnp 3714227 3714685 + transposase for the IS1541 insertion element Similar to Salmonella typhimurium%2C and Salmonella typhi transposase for insertion sequence IS200 TnpA SW:T200_SALTY (Q57334) (152 aa) fasta scores: E(): 0%2C 94.1%25 id in 152 aa. Identical to the Yersinia pseudotuberculosis IS1541-like element transposase Tnp TR:Q9X9F5 (EMBL:AJ238014) (152 aa) fasta scores: E(): 0%2C 100.0%25 id in 152 aa gene gene3276 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3329 YPO3330 YPO3330 YPO3330 3714836 3716350 + putative sugar ABC transporter%2C ATP-binding protein Similar to Escherichia coli D-xylose transport ATP-binding protein XylG SW:XYLG_ECOLI (P37388) (513 aa) fasta scores: E(): 0%2C 39.5%25 id in 499 aa%2C and to Bacillus halodurans ribose ABC transporter RbsA TR:Q9K6J9 (EMBL:AP001519) (499 aa) fasta scores: E(): 0%2C 38.8%25 id in 495 aa gene gene3277 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3330 YPO3331 YPO3331 YPO3331 3716343 3717332 + putative sugar ABC transporter%2C permease protein Similar to Escherichia coli ribose transport system permease protein RbsC SW:RBSC_ECOLI (P04984) (321 aa) fasta scores: E(): 2.2e-30%2C 34.2%25 id in 301 aa%2C and to Bacillus subtilis membrane transport protein RbsC TR:P96731 (EMBL:Z92953) (322 aa) fasta scores: E(): 7.9e-33%2C 35.4%25 id in 302 aa gene gene3278 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3331 YPO3332 YPO3332 YPO3332 3717345 3718382 + putative sugar ABC transporter%2C permease protein Similar to Bacillus subtilis ribose transport system permease protein RbsC SW:RBSC_BACSU (P36948) (323 aa) fasta scores: E(): 5.3e-25%2C 31.6%25 id in 320 aa%2C and to Vibrio cholerae ribose ABC transporter%2C permease protein Vca0129 TR:Q9KN36 (EMBL:AE004354) (332 aa) fasta scores: E(): 1.4e-21%2C 29.8%25 id in 305 aa gene gene3279 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3332 YPO3333 YPO3333 sgbU sgbU 3718588 3719469 + putative hexulose-6-phosphate isomerase Similar to Escherichia coli putative hexulose-6-phosphate isomerase SgbU SW:SGBU_ECOLI (P37679) (286 aa) fasta scores: E(): 0%2C 71.5%25 id in 284 aa%2C and to Haemophilus influenzae putative hexulose-6-phosphate isomerase SgbU or Hi1026 SW:SGBU_HAEIN (P44990) (286 aa) fasta scores: E(): 0%2C 63.3%25 id in 283 aa gene gene3280 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3333 YPO3334 YPO3334 lyx lyx 3719480 3720976 + putative L-xylulose kinase Similar to Escherichia coli cryptic L-xylulose kinase Lyx or LyxK or XylK or SgbK SW:LYXK_ECOLI (P37677) (498 aa) fasta scores: E(): 0%2C 42.8%25 id in 495 aa%2C and to Haemophilus influenzae probable L-xylulose kinase Lyx or LyxK or SgbK or Hi1027 SW:LYXK_HAEIN (P44991) (485 aa) fasta scores: E(): 0%2C 39.5%25 id in 499 aa gene gene3281 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3334 YPO3335 YPO3335 fumA fumA 3721374 3723017 + fumarate hydratase%2C class I Similar to class I fumarate hydratases%2C e.g. Escherichia coli fumarate hydratase class I%2C aerobic FumA SW:FUMA_ECOLI (P00923) (547 aa) fasta scores: E(): 0%2C 86.4%25 id in 545 aa%2C and to Escherichia coli fumarate hydratase class I%2C anaerobic FumB SW:FUMB_ECOLI (P14407) (548 aa) fasta scores: E(): 0%2C 85.7%25 id in 546 aa gene gene3282 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3335 YPO3336 YPO3336 YPO3336 3723146 3723451 + conserved hypothetical protein Similar to Escherichia coli hypothetical protein YfbH SW:YBFH_ECOLI () (105 aa) fasta scores: E(): 0.74%2C23.8%25 id in 105 aa gene gene3283 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3336 YPO3337 YPO3337 map map 3723448 3724233 + methionine aminopeptidase Similar to Escherichia coli methionine aminopeptidase Map SW:AMPM_ECOLI (P07906) (264 aa) fasta scores: E(): 0%2C 57.9%25 id in 247 aa%2C and to Xylella fastidiosa methionine aminopeptidase Xf0111 TR:Q9PH35 (EMBL:AE003865) (259 aa) fasta scores: E(): 0%2C 62.6%25 id in 257 aa. Similar to YPO1043 (54.3%25 identity in 247 aa overlap gene gene3284 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3337 YPO3339 YPO3339 YPO3339 3724591 3725778 - hypothetical protein Weakly similar to Escherichia coli ankyrin-repeat protein A ArpA or Arp SW:ARPA_ECOLI (P23325) (728 aa) fasta scores: E(): 5.3e-10%2C 24.9%25 id in 369 aa%2C and to Shigella flexneri enterotoxin SenA TR:Q47635 (EMBL:Z54211) (565 aa) fasta scores: E(): 1.6e-09%2C 27.2%25 id in 357 aa gene gene3285 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3339 YPO3340 YPO3340 YPO3340 3726211 3728307 - putative exogenous ferric siderophore receptor (pseudogene) Similar to Escherichia coli exogenous ferric siderophore receptor R4 TR:O87518 (EMBL:AF081285) (669 aa) fasta scores: E(): 0%2C 56.4%25 id in 674 aa%2C and to Escherichia coli O157:H7 adhesin Iha TR:Q9LAP1 (EMBL:AF126104) (696 aa) fasta scores: E(): 0%2C 56.4%25 id in 674 aa. This CDS contains a stop codon at position 528. The sequence has been checked and is believed to be correct pseudogene gene3286 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3340 YPO3342 YPO3342 yhjA yhjA 3728968 3730347 + putative cytochrome C peroxidase Similar to Escherichia coli probable cytochrome C peroxidase YhjA SW:YHJA_ECOLI (P37197) (465 aa) fasta scores: E(): 0%2C 55.7%25 id in 458 aa%2C and to Haemophilus ducreyi cytochrome C peroxidase TR:Q9RF96 (EMBL:AF200362) (461 aa) fasta scores: E(): 0%2C 51.9%25 id in 449 aa gene gene3287 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3342 YPO3343 YPO3343 YPO3343 3730412 3731182 + probable extracellular solute-binding protein Similar to Pseudomonas aeruginosa cyclohexadienyl dehydratase precursor [includes: prephenate dehydratase and arogenate dehydratase] PheC or Pa3475 SW:PHEC_PSEAE (Q01269) (268 aa) fasta scores: E(): 7.6e-27%2C 37.1%25 id in 251 aa%2C and to Vibrio cholerae amino acid ABC transporter%2Cperiplasmic amino acid-binding protein Vca1039 TR:Q9KKR3 (EMBL:AE004429) (278 aa) fasta scores: E(): 6.5e-14%2C 25.7%25 id in 245 aa gene gene3288 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3343 YPO3344 YPO3344 YPO3344 3731603 3731809 + hypothetical protein no significant database hits to the full length CDS. Weakly similar to the C-terminal regions of Dictyostelium discoideum hypothetical 29.9 kDa protein TR:Q9NAX7 (EMBL:AF279134) (268 aa) fasta scores: E(): 2.1%2C 35.8%25 id in 53 aa%2C and of Homo sapiens proline-rich protein PrcC or TprC SW:PRCC_HUMAN (Q92733) (491 aa) fasta scores: E(): 8.4%2C 31.1%25 id in 45 aa gene gene3289 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3344 YPO3345 YPO3345 YPO3345 3732005 3732283 + hypothetical protein no significant database hits gene gene3290 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3345 YPO3346 YPO3346 arsR arsR 3732530 3732871 + arsenical resistance operon repressor Similar to Escherichia coli arsenical resistance operon repressor ArsR SW:ARR1_ECOLI (P15905) (117 aa) fasta scores: E(): 2.4e-32%2C 67.2%25 id in 116 aa%2C and to Klebsiella oxytoca ArsR TR:Q9KJI5 (EMBL:AF168737) (116 aa) fasta scores: E(): 3.9e-28%2C 63.7%25 id in 113 aa gene gene3291 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3346 YPO3347 YPO3347 arsB arsB 3732956 3734245 + arsenical pump membrane protein Similar to Escherichia coli arsenical pump membrane protein ArsB or ArsF SW:ARSB_ECOLI (P37310) (429 aa) fasta scores: E(): 0%2C 83.7%25 id in 429 aa%2C and to Serratia marcescens ArsB transmembrane efflux channel ArsB TR:Q9L336 (EMBL:AJ288983) (429 aa) fasta scores: E(): 0%2C 87.9%25 id in 429 aa gene gene3292 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3347 YPO3348 YPO3348 YPO3348 3734812 3735771 + transcriptional regulatory protein Similar to Vibrio cholerae transcriptional regulator%2C SorC family VCA0621 TR:Q9KLX0 (EMBL:AE004392) (331 aa) fasta scores: E(): 0%2C 66.6%25 id in 311 aa%2C and to Bacillus halodurans transcriptional regulator BH0780 TR:Q9KER9 (EMBL:AP001509) (316 aa) fasta scores: E(): 5.2e-28%2C 31.5%25 id in 314 aa gene gene3293 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3348 YPO3349 YPO3349 YPO3349 3735892 3736566 - conserved hypothetical protein Similar to Escherichia coli protein YcgS SW:YCGS_ECOLI (P76014) (210 aa) fasta scores: E(): 5.3e-13%2C31.3%25 id in 182 aa%2C and to Bacillus halodurans BH3396 protein TR:Q9K7G5 (EMBL:AP001518) (196 aa) fasta scores: E(): 3.2e-10%2C 33.5%25 id in 203 aa gene gene3294 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3349 YPO3350 YPO3350 dhaK dhaK 3736573 3737574 - putative dihydroxyacetone kinase Similar to Citrobacter freundii dihydroxyacetone kinase DhaK SW:DAK_CITFR (P45510) (552 aa) fasta scores: E(): 5.6e-28%2C 34.7%25 id in 320 aa%2C and to Bacillus halodurans dihydroxyacetone kinase Bh3397 TR:Q9K7G4 (EMBL:AP001518) (330 aa) fasta scores: E(): 0%2C 41.0%25 id in 315 aa%2C and to Escherichia coli hypothetical 39.5 kDa protein in treA-pth intergenic region YcgT SW:YCGT_ECOLI (P76015) (366 aa) fasta scores: E(): 1.4e-29%2C 37.7%25 id in 355 aa gene gene3295 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3350 YPO3351 YPO3351 YPO3351 3737661 3738431 - putative dehydrogenase Similar to Escherichia coli 2-deoxy-D-gluconate 3-dehydrogenase KduD SW:KDUD_ECOLI (P37769) (253 aa) fasta scores: E(): 8.8e-26%2C 36.9%25 id in 255 aa%2C and to Archaeoglobus fulgidus 2-deoxy-D-gluconate 3-dehydrogenase af1207 TR:O29061 (EMBL:AE001021) (281 aa) fasta scores: E(): 1.1e-30%2C 41.2%25 id in 250 aa gene gene3296 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3351 YPO3352 YPO3352 ydjJ ydjJ 3738495 3739610 - putative Zinc-binding dehydrogenase Similar to Pseudomonas putida 2%2C3-butanediol dehydrogenase Adh TR:Q59696 (EMBL:L35343) (362 aa) fasta scores: E(): 0%2C 35.5%25 id in 358 aa%2C and to Escherichia coli hypothetical zinc-type alcohol dehydrogenase-like protein in ansA-gapA intergenic region YdjJ SW:YDJJ_ECOLI (P77280) (347 aa) fasta scores: E(): 5.8e-30%2C 30.7%25 id in 348 aa. Similar to YPO2502 (52.6%25 identity in 361 aa overlap) gene gene3297 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3352 YPO3353 YPO3353 rpiB rpiB 3740093 3740548 + ribose 5-phosphate isomerase B Similar to Escherichia coli ribose 5-phosphate isomerase B RpiB SW:RPIB_ECOLI (P37351) (149 aa) fasta scores: E(): 1.7e-22%2C 44.2%25 id in 147 aa%2C and to Bacillus halodurans ribose 5-phosphate epimerase Bh3767 TR:Q9K6G2 (EMBL:AP001519) (145 aa) fasta scores: E(): 7.3e-24%2C 44.1%25 id in 145 aa gene gene3298 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3353 YPO3354 YPO3354 fdv fdv 3741342 3743897 + DNA mismatch repair protein MutS Similar to Escherichia coli DNA mismatch repair protein MutS or Fdv SW:MUTS_ECOLI (P23909) (853 aa) fasta scores: E(): 0%2C 83.8%25 id in 853 aa%2C and to Salmonella typhimurium DNA mismatch repair protein MutS SW:MUTS_SALTY (P10339) (854 aa) fasta scores: E(): 0%2C 81.4%25 id in 853 aa gene gene3299 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3354 YPO3355 YPO3355 appR appR 3744225 3745223 - RNA polymerase sigma factor RpoS Similar to Yersinia enterocolitica RNA polymerase sigma factor RpoS SW:RPOS_YEREN (P47765) (331 aa) fasta scores: E(): 0%2C 97.3%25 id in 332 aa%2C and to Escherichia coli RNA polymerase sigma factor RpoS or KatF or AppR or SigS or OtsX or Nur SW:RPOS_ECOLI (P13445) (330 aa) fasta scores: E(): 0%2C 92.5%25 id in 332 aa gene gene3300 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3355 YPO3356 YPO3356 nlpD nlpD 3745278 3746279 - lipoprotein Similar to Escherichia coli lipoprotein NlpD precursor SW:NLPD_ECOLI (P33648) (379 aa) fasta scores: E(): 0%2C 58.7%25 id in 387 aa%2C and to Salmonella dublin NlpD protein TR:CAA06881 (EMBL:AJ006131) (377 aa) fasta scores: E(): 0%2C 58.9%25 id in 387 aa. This CDS lacks four repeat consensus sequence%2C QQPQIQPV%2C present in E. coli gene gene3301 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3356 YPO3357 YPO3357 pcm pcm 3746383 3747009 - protein-L-isoaspartate O-methyltransferase Similar to Escherichia coli protein-L-isoaspartate O-methyltransferase Pcm SW:PIMT_ECOLI (P24206) (207 aa) fasta scores: E(): 0%2C 80.2%25 id in 207 aa%2C and to Vibrio cholerae protein-L-isoaspartate O-methyltransferase Vc0532 TR:Q9KUI8 (EMBL:AE004139) (208 aa) fasta scores: E(): 0%2C63.5%25 id in 208 aa gene gene3302 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3357 YPO3358 YPO3358 surE surE 3747003 3747767 - stationary-phase survival protein Similar to Escherichia coli stationary-phase survival protein SurE SW:SURE_ECOLI (P36664) (253 aa) fasta scores: E(): 0%2C 80.2%25 id in 253 aa%2C and to Vibrio cholerae survival protein SurE TR:Q9KUI9 (EMBL:AE004139) (263 aa) fasta scores: E(): 0%2C 55.2%25 id in 252 aa gene gene3303 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3358 YPO3359 YPO3359 YPO3359 3747745 3748794 - conserved hypothetical protein Similar to Escherichia coli hypothetical protein YgbO SW:YGBO_ECOLI (Q57261) (349 aa) fasta scores: E(): 0%2C66.6%25 id in 338 aa%2C and to Haemophilus influenzae hypothetical protein HI0701 SW:YGBO_HAEIN (P44039) (339 aa) fasta scores: E(): 0%2C 45.6%25 id in 340 aa gene gene3304 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3359 YPO3360 YPO3360 b2746 b2746 3748805 3749293 - 2C-methyl-D-erythritol 2%2C4-cyclodiphosphate synthase Similar to Escherichia coli 2C-methyl-D-erythritol 2%2C4-cyclodiphosphate synthase IspF or B2746 SW:ISPF_ECOLI (P36663) (159 aa) fasta scores: E(): 0%2C 85.1%25 id in 161 aa%2Cand to Vibrio cholerae 2C-methyl-D-erythritol 2%2C4-cyclodiphosphate synthase IspF or Vc0529 TR:Q9KUJ1 (EMBL:AE004139) (158 aa) fasta scores: E(): 0%2C 72.4%25 id in 156 aa gene gene3305 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3360 YPO3361 YPO3361 b2747 b2747 3749432 3750157 - 4-diphosphocytidyl-2C-methyl-D-erythritol synthase Similar to Escherichia coli 4-diphosphocytidyl-2C-methyl-D-erythritol synthase IspD or B2747 SW:ISPD_ECOLI (Q46893) (236 aa) fasta scores: E(): 0%2C68.2%25 id in 223 aa gene gene3306 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3361 YPO3362 YPO3362 YPO3362 3750161 3750481 - conserved hypothetical protein Similar to Escherichia coli hypothetical protein YgbQ SW:YGBQ_ECOLI (Q46894) (103 aa) fasta scores: E(): 2.5e-30%2C 75.0%25 id in 104 aa%2C and to Vibrio cholerae hypothetical protein VC0527 TR:Q9KUJ3 (EMBL:AE004139) (96 aa) fasta scores: E(): 1.2e-16%2C 52.1%25 id in 94 aa gene gene3307 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3362 YPO3363 YPO3363 ygbE ygbE 3750795 3751112 - putative membrane protein Similar to Escherichia coli hypothetical 12.0 kDa protein in surE-cysC intergenic region YgbE SW:YGBE_ECOLI (P46141) (107 aa) fasta scores: E(): 1e-14%2C 47.6%25 id in 103 aa gene gene3308 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3363 YPO3364 YPO3364 cysC cysC 3751303 3751944 - adenylylsulfate kinase Similar to Escherichia coli adenylylsulfate kinase CysC SW:CYSC_ECOLI (P23846) (200 aa) fasta scores: E(): 0%2C80.2%25 id in 197 aa%2C and to Vibrio cholerae adenylylsulfate kinase CysC or Vc2558 TR:Q9KP21 (EMBL:AE004324) (215 aa) fasta scores: E(): 0%2C 63.0%25 id in 211 aa gene gene3309 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3364 YPO3365 YPO3365 cysN cysN 3751946 3753382 - sulfate adenylyltransferase subunit 1 Similar to Escherichia coli sulfate adenylyltransferase subunit 1 CysN SW:CYSN_ECOLI (P23845) (475 aa) fasta scores: E(): 0%2C 79.1%25 id in 474 aa%2C and to Vibrio cholerae sulfate adenylate transferase subunit 1 Vc2559 TR:Q9KP20 (EMBL:AE004324) (476 aa) fasta scores: E(): 0%2C 65.1%25 id in 470 aa gene gene3310 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3365 YPO3366 YPO3366 cysD cysD 3753475 3754383 - sulfate adenylyltransferase subunit 2 Similar to Escherichia coli sulfate adenylyltransferase subunit 2 CysD SW:CYSD_ECOLI (P21156) (302 aa) fasta scores: E(): 0%2C 89.7%25 id in 302 aa%2C and to Vibrio cholerae sulfate adenylate transferase subunit 2 Vc2560 TR:Q9KP19 (EMBL:AE004324) (315 aa) fasta scores: E(): 0%2C 81.1%25 id in 302 aa gene gene3311 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3366 YPO3367 YPO3367 cysG cysG 3754394 3755812 - siroheme synthase Similar to Escherichia coli siroheme synthase [includes: uroporphyrin-III C-methyltransferase%2Cprecorrin-2 oxidase%2C and ferrochelatase] CysG SW:CYSG_ECOLI (P11098) (457 aa) fasta scores: E(): 0%2C 56.1%25 id in 460 aa%2Cand to Neisseria meningitidis siroheme synthase Cysg or Nma1367 SW:CYSG_NEIMA (P57001) (486 aa) fasta scores: E(): 0%2C 60.8%25 id in 464 aa. Similar to YPO0158 (53.5%25 identity in 458 aa overlap) gene gene3312 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3367 YPO3368 YPO3368 YPO3368 3756113 3756379 - putative membrane protein no significant database matches gene gene3313 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3368 YPO3369 YPO3369 YPO3369 3756778 3757185 + conserved hypothetical protein Similar to Bacteriophage HP1 hypothetical protein SW:YO14_BPHP1 (P51716) (133 aa) fasta scores: E(): 3.2e-14%2C40.4%25 id in 136 aa%2C and to Escherichia coli YcfB protein TR:BAB12617 (EMBL:AP002527) (145 aa) fasta scores: E(): 0.011%2C 27.6%25 id in 127 aa gene gene3314 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3369 YPO3370 YPO3370 cysH cysH 3757431 3758154 - phosphoadenosine phosphosulfate reductase (pseudogene) Similar to Escherichia coli phosphoadenosine phosphosulfate reductase CysH SW:CYSH_ECOLI (P17854) (243 aa) fasta scores: E(): 0%2C 77.8%25 id in 243 aa%2C and to Salmonella typhimurium phosphoadenosine phosphosulfate reductase CysH SW:CYSH_SALTY (P17853) (243 aa) fasta scores: E(): 0%2C 79.4%25 id in 243 aa. There is a frameshift around codon 154. The sequence has been checked and is believed to be correct pseudogene gene3315 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3370 YPO3371 YPO3371 cysI cysI 3758151 3759881 - sulfite reductase [NADPH] hemoprotein beta-component Similar to Escherichia coli sulfite reductase [NADPH] hemoprotein beta-component CysI SW:CYSI_ECOLI (P17846) (569 aa) fasta scores: E(): 0%2C 80.4%25 id in 570 aa%2Cand to Salmonella typhimurium sulfite reductase [NADPH] hemoprotein beta-component CysI SW:CYSI_SALTY (P17845) (569 aa) fasta scores: E(): 0%2C 80.9%25 id in 570 aa gene gene3316 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3371 YPO3372 YPO3372 cysJ cysJ 3759881 3761701 - sulfite reductase [NADPH] flavoprotein alpha-component Similar to Escherichia coli sulfite reductase [NADPH] flavoprotein alpha-component CysJ SW:CYSJ_ECOLI (P38038) (598 aa) fasta scores: E(): 0%2C 74.9%25 id in 606 aa%2Cand to Salmonella typhimurium sulfite reductase [NADPH] flavoprotein alpha-component CysJ SW:CYSJ_SALTY (P38039) (598 aa) fasta scores: E(): 0%2C 73.7%25 id in 605 aa gene gene3317 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3372 YPO3373 YPO3373 ygcM ygcM 3762094 3762453 + putative 6-pyruvoyl tetrahydrobiopterin synthase family protein Similar to Escherichia coli putative 6-pyruvoyl tetrahydrobiopterin synthase YgcM SW:PTPS_ECOLI (Q46903) (121 aa) fasta scores: E(): 0%2C 83.2%25 id in 119 aa%2C and to Vibrio cholerae putative 6-pyruvoyl tetrahydrobiopterin synthase Vc1299 TR:Q9KSF7 (EMBL:AE004209) (122 aa) fasta scores: E(): 0%2C 76.5%25 id in 119 aa gene gene3318 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3373 YPO3374 YPO3374 YPO3374 3762687 3763358 - conserved hypothetical protein Similar to Escherichia coli hypothetical protein YgcF SW:YGCF_ECOLI (P55139) (223 aa) fasta scores: E(): 0%2C79.4%25 id in 223 aa%2C and to Vibrio cholerae hypothetical protein VC1365 TR:Q9KS94 (EMBL:AE004216) (245 aa) fasta scores: E(): 0%2C 60.5%25 id in 223 aa gene gene3319 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3374 YPO3375 YPO3375 sodC sodC 3763462 3764067 - superoxide dismutase [Cu-Zn] precursor Similar to Escherichia coli superoxide dismutase [Cu-Zn] precursor SodC SW:SODC_ECOLI (P53635) (173 aa) fasta scores: E(): 0%2C 59.9%25 id in 162 aa%2C and to Salmonella typhimurium superoxide dismutase [Cu-Zn] precursor SodC or SodcI SW:SODC_SALTY (P53636) (177 aa) fasta scores: E(): 0%2C75.6%25 id in 160 aa gene gene3320 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3375 YPO3376 YPO3376 eno eno 3764439 3765734 - enolase Similar to Escherichia coli enolase Eno SW:ENO_ECOLI (P08324) (431 aa) fasta scores: E(): 0%2C 94.4%25 id in 430 aa%2Cand to Enterococcus faecalis enolase Eno TR:Q9K596 (EMBL:AJ401152) (432 aa) fasta scores: E(): 0%2C 66.0%25 id in 430 aa gene gene3321 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3376 YPO3377 YPO3377 pyrG pyrG 3765815 3767452 - CTP synthase Similar to Escherichia coli CTP synthase PyrG SW:PYRG_ECOLI (P08398) (544 aa) fasta scores: E(): 0%2C 88.8%25 id in 544 aa%2C and to Haemophilus influenzae CTP synthase PyrG or Hi1077 SW:PYRG_HAEIN (P44341) (545 aa) fasta scores: E(): 0%2C 81.7%25 id in 545 aa gene gene3322 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3377 YPO3378 YPO3378 YPO3378 3767664 3768506 - conserved hypothetical protein Similar to Escherichia coli hypothetical protein MazG SW:MAZG_ECOLI (P33646) (263 aa) fasta scores: E(): 0%2C72.6%25 id in 266 aa%2C and to Vibrio cholerae MazG protein VC2450 TR:Q9KPC2 (EMBL:AE004315) (278 aa) fasta scores: E(): 0%2C 56.0%25 id in 268 aa gene gene3323 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3378 YPO3379 YPO3379 YPO3379 3768513 3768671 - hypothetical protein no significant database hits gene gene3324 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3379 YPO3380 YPO3380 relA relA 3768708 3770942 - GTP pyrophosphokinase Similar to Escherichia coli GTP pyrophosphokinase RelA SW:RELA_ECOLI (P11585) (744 aa) fasta scores: E(): 0%2C84.7%25 id in 745 aa%2C and to Vibrio cholerae GTP pyrophosphokinase RelA or Vc2451 TR:Q9S3S3 (EMBL:AF175295) (738 aa) fasta scores: E(): 0%2C 64.0%25 id in 741 aa gene gene3325 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3380 YPO3381 YPO3381 barA barA 3771386 3774178 + two-component regulatory protein Similar to Escherichia coli sensor protein BarA SW:BARA_ECOLI (P26607) (918 aa) fasta scores: E(): 0%2C 61.6%25 id in 928 aa%2C and to Erwinia carotovora subsp. carotovora sensor/regulator protein RpfA TR:O08235 (EMBL:U62023) (929 aa) fasta scores: E(): 0%2C 59.7%25 id in 938 aa gene gene3326 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3381 YPO3382 YPO3382 degP degP 3774353 3775798 - global stress requirement protein GsrA Similar to Yersinia enterocolitica GsrA protein TR:P74978 (EMBL:D78376) (478 aa) fasta scores: E(): 0%2C92.3%25 id in 481 aa%2C and to Escherichia coli protease Do precursor DegP or HtrA or Ptd SW:DEGP_ECOLI (P09376) (474 aa) fasta scores: E(): 0%2C 74.9%25 id in 482 aa. Similar to YPO3566 (58.0%25 identity in 483 aa overlap) gene gene3327 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3382 YPO3383 YPO3383 dgt dgt 3775996 3777516 - deoxyguanosinetriphosphate triphosphohydrolase Similar to Escherichia coli deoxyguanosinetriphosphate triphosphohydrolase Dgt SW:DGTP_ECOLI (P15723) (504 aa) fasta scores: E(): 0%2C 65.1%25 id in 505 aa%2C and to Escherichia fergusonii deoxyguanosinetriphosphate triphosphohydrolase Dgt SW:DGTP_ESCFE (Q59435) (504 aa) fasta scores: E(): 0%2C 65.0%25 id in 505 aa gene gene3328 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3383 YPO3384 YPO3384 mtn mtn 3777810 3778511 + MTA/SAH nucleosidase Similar to Escherichia coli MTA/SAH nucleosidase Mtn or Pfs SW:MTN_ECOLI (P24247) (232 aa) fasta scores: E(): 0%2C75.3%25 id in 231 aa%2C and to Vibrio cholerae MTA/SAH nucleosidase Vc2379 TR:Q9KPI8 (EMBL:AE004308) (231 aa) fasta scores: E(): 0%2C 62.6%25 id in 230 aa gene gene3329 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3384 YPO3385 YPO3385 btuF btuF 3778511 3779353 + putative priplasmic metal binding protein Similar to Salmonella typhimurium cobalamin periplasmic binding protein BtuF TR:Q9ZFP9 (EMBL:AF096877) (266 aa) fasta scores: E(): 0%2C 51.7%25 id in 259 aa%2C and to Escherichia coli hypothetical 29.4 kDa protein in hemL-pfs intergenic region precursor YadT SW:YADT_ECOLI (P37028) (266 aa) fasta scores: E(): 0%2C 54.6%25 id in 260 aa gene gene3330 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3385 YPO3386 YPO3386 yadS yadS 3779353 3779967 + putative membrane protein Similar to Escherichia coli hypothetical 22.1 kDa protein in hemL-pfs intergenic region YadS SW:YADS_ECOLI (P37027) (207 aa) fasta scores: E(): 0%2C 86.7%25 id in 203 aa%2Cand to Vibrio cholerae hypothetical protein Vc2382 TR:Q9KPI5 (EMBL:AE004308) (239 aa) fasta scores: E(): 0%2C66.7%25 id in 201 aa gene gene3331 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3386 YPO3387 YPO3387 YPO3387 3780252 3780596 - conserved hypothetical protein Similar to Escherichia coli hypothetical protein YadR SW:YADR_ECOLI (P37026) (114 aa) fasta scores: E(): 0%2C88.6%25 id in 114 aa%2C and to Haemophilus influenzae hypothetical protein HI1723 SW:YADR_HAEIN (P45344) (114 aa) fasta scores: E(): 0%2C 78.9%25 id in 114 aa gene gene3332 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3387 YPO3388 YPO3388 yadQ yadQ 3780732 3782075 - putative chloride channel protein Similar to Escherichia coli hypothetical 46.0 kDa protein in hemL-pfs intergenic region YadQ SW:YADQ_ECOLI (P37019) (436 aa) fasta scores: E(): 0%2C 72.7%25 id in 436 aa%2Cand to Vibrio cholerae hypothetical protein Vca0526 TR:Q9KM62 (EMBL:AE004383) (468 aa) fasta scores: E(): 0%2C58.3%25 id in 432 aa gene gene3333 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3388 YPO3389 YPO3389 gsa gsa 3782549 3783829 + glutamate-1-semialdehyde 2%2C1-aminomutase Similar to Escherichia coli glutamate-1-semialdehyde 2%2C1-aminomutase HemL or Gsa or PopC SW:GSA_ECOLI (P23893) (426 aa) fasta scores: E(): 0%2C 88.5%25 id in 426 aa%2C and to Salmonella enterica serovar Typhimurium glutamate 1-semialdehyde aminotransferase HemL TR:CAC03102 (EMBL:AJ278741) (426 aa) fasta scores: E(): 0%2C 88.0%25 id in 426 aa gene gene3334 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3389 YPO3390 YPO3390 fhuB fhuB 3784203 3786200 - ferrichrome transport system permease protein FhuB Similar to Escherichia coli ferrichrome transport system permease protein FhuB SW:FHUB_ECOLI (P06972) (660 aa) fasta scores: E(): 0%2C 68.3%25 id in 654 aa%2C and to Rhizobium leguminosarum FhuB TR:Q9S6S8 (EMBL:AJ007906) (634 aa) fasta scores: E(): 0%2C 46.3%25 id in 643 aa gene gene3335 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3390 YPO3391 YPO3391 fhuD fhuD 3786197 3787108 - ferrichrome-binding periplasmic protein precursor Similar to Escherichia coli ferrichrome-binding periplasmic protein precursor FhuD SW:FHUD_ECOLI (P07822) (296 aa) fasta scores: E(): 0%2C 54.6%25 id in 262 aa%2C and to Rhizobium leguminosarum FhuD TR:O86462 (EMBL:AJ007906) (301 aa) fasta scores: E(): 6.2e-24%2C 32.8%25 id in 259 aa gene gene3336 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3391 YPO3392 YPO3392 fhuC fhuC 3787285 3788079 - ferrichrome transport ATP-binding protein FhuC Similar to Escherichia coli ferrichrome transport ATP-binding protein FhuC SW:FHUC_ECOLI (P07821) (265 aa) fasta scores: E(): 0%2C 80.8%25 id in 260 aa%2C and to Rhizobium leguminosarum FhuC TR:O86461 (EMBL:AJ007906) (268 aa) fasta scores: E(): 0%2C 51.6%25 id in 254 aa gene gene3337 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3392 YPO3393 YPO3393 b0149 b0149 3788401 3790875 - penicillin-binding protein 1B Similar to Escherichia coli penicillin-binding protein 1B MrcB or PonB or PbpF or B0149 SW:PBPB_ECOLI (P02919) (844 aa) fasta scores: E(): 0%2C 69.6%25 id in 851 aa%2Cand to Citrobacter freundii penicillin-binding protein 1B TR:Q46049 (EMBL:Z49960) (846 aa) fasta scores: E(): 0%2C69.0%25 id in 851 aa. This CDS has a deletion at the C-terminal end relative to E. coli gene gene3338 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3393 YPO3394 YPO3394 hrpB hrpB 3790984 3793470 - ATP-dependent helicase Similar to Rhizobium meliloti helicase HelO TR:Q52902 (EMBL:U49051) (821 aa) fasta scores: E(): 0%2C43.1%25 id in 824 aa%2C and to Escherichia coli ATP-dependent helicase HrpB SW:HRPB_ECOLI (P37024) (809 aa) fasta scores: E(): 0%2C 65.6%25 id in 816 aa gene gene3339 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3394 YPO3395 YPO3395 ligT ligT 3793586 3794161 + putative 2'-5' RNA ligase Similar to Escherichia coli 2'-5' RNA ligase LigT SW:LIGT_ECOLI (P37025) (175 aa) fasta scores: E(): 0%2C 60.0%25 id in 170 aa gene gene3340 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3395 YPO3396 YPO3396 sfs1 sfs1 3794274 3795011 + sugar fermentation stimulation protein Similar to Escherichia coli sugar fermentation stimulation protein A SfsA or Sfs1 SW:SFSA_ECOLI (P18273) (234 aa) fasta scores: E(): 0%2C 63.7%25 id in 234 aa%2C and to Vibrio cholerae sugar fermentation stimulation protein VC0597 TR:Q9KUC5 (EMBL:AE004144) (256 aa) fasta scores: E(): 0%2C 61.0%25 id in 231 aa gene gene3341 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3396 YPO3397 YPO3397 dksA dksA 3795181 3795636 + DnaK suppressor protein homologue Similar to Escherichia coli DnaK suppressor protein SW:DKSA_ECOLI (P18274) (151 aa) fasta scores: E(): 0%2C 94.7%25 id in 151 aa%2C and to Salmonella typhimurium DnaK suppressor protein SW:DKSA_SALTY (Q9ZIW3) (151 aa) fasta scores: E(): 0%2C 96.0%25 id in 151 aa gene gene3342 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3397 YPO3398 YPO3398 yadB yadB 3795916 3796881 + putative glutamyl-tRNA synthetase Similar to Escherichia coli hypothetical 33.6 kDa protein in pcnB-dksA intergenic region YadB SW:YADB_ECOLI (P27305) (298 aa) fasta scores: E(): 0%2C 71.2%25 id in 281 aa%2Cand to Vibrio cholerae glutamyl-tRNA synthetase-related protein Vc0595 TR:Q9KUC7 (EMBL:AE004144) (304 aa) fasta scores: E(): 0%2C 57.5%25 id in 294 aa gene gene3343 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3398 YPO3399 YPO3399 pcnB pcnB 3797123 3798445 + poly(A) polymerase Similar to Escherichia coli poly(A) polymerase PcnB SW:PCNB_ECOLI (P13685) (472 aa) fasta scores: E(): 0%2C 79.0%25 id in 439 aa%2C and to Vibrio cholerae poly(A) polymerase VC0594 TR:Q9KUC8 (EMBL:AE004144) (457 aa) fasta scores: E(): 0%2C 58.0%25 id in 433 aa gene gene3344 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3399 YPO3400 YPO3400 folK folK 3798453 3798932 + 2-amino-4-hydroxy-6-hydroxymethyldihydropteridin e pyrophosphokinase Similar to Escherichia coli 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase FolK SW:HPPK_ECOLI (P26281) (158 aa) fasta scores: E(): 0%2C 63.2%25 id in 155 aa%2C and to Vibrio cholerae 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase Vc0593 TR:Q9KUC9 (EMBL:AE004144) (167 aa) fasta scores: E(): 0%2C 59.7%25 id in 159 aa gene gene3345 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3400 YPO3401 YPO3401 panB panB 3799198 3799998 + 3-methyl-2-oxobutanoate hydroxymethyltransferase Similar to Escherichia coli 3-methyl-2-oxobutanoate hydroxymethyltransferase PanB SW:PANB_ECOLI (P31057) (264 aa) fasta scores: E(): 0%2C 76.2%25 id in 265 aa%2C and to Vibrio cholerae 3-methyl-2-oxobutanoate hydroxymethyltransferase Vc0592 TR:Q9KUD0 (EMBL:AE004144) (264 aa) fasta scores: E(): 0%2C 68.8%25 id in 263 aa gene gene3346 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3401 YPO3402 YPO3402 panC panC 3800086 3800940 + pantoate--beta-alanine ligase Similar to Escherichia coli pantoate--beta-alanine ligase PanC SW:PANC_ECOLI (P31663) (283 aa) fasta scores: E(): 0%2C 72.0%25 id in 282 aa%2C and to Vibrio cholerae pantoate--beta-alanine ligase Vc0591 TR:Q9KUD1 (EMBL:AE004144) (293 aa) fasta scores: E(): 0%2C 59.0%25 id in 283 aa gene gene3347 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3402 YPO3403 YPO3403 panD panD 3801351 3801731 + aspartate 1-decarboxylase precursor Similar to Escherichia coli aspartate 1-decarboxylase precursor PanD SW:PAND_ECOLI (P31664) (126 aa) fasta scores: E(): 0%2C 78.6%25 id in 126 aa%2C and to Pseudomonas aeruginosa aspartate 1-decarboxylase precursor Pa4731 TR:AAG08117 (EMBL:AE004887) (126 aa) fasta scores: E(): 1.5e-27%2C 58.2%25 id in 122 aa gene gene3348 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3403 YPO3404 YPO3404 YPO3404 3801880 3803073 - conserved hypothetical protein Similar to Escherichia coli hypothetical protein YadE SW:YADE_ECOLI (P31666) (409 aa) fasta scores: E(): 0%2C65.4%25 id in 382 aa gene gene3349 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3404 YPO3405 YPO3405 yadH yadH 3803400 3804170 - putative ABC transporter%2C integral membrane protein Similar to Escherichia coli hypothetical 28.5 kDa protein in hpt-panD intergenic region YadH SW:YADH_ECOLI (P36880) (256 aa) fasta scores: E(): 0%2C 80.1%25 id in 256 aa%2Cand to Vibrio cholerae putative permease Vc0590 TR:Q9KUD2 (EMBL:AE004144) (256 aa) fasta scores: E(): 0%2C 66.0%25 id in 256 aa gene gene3350 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3405 YPO3406 YPO3406 yadG yadG 3804167 3805093 - putative ABC transporter%2C ATP-binding protein Similar to Escherichia coli hypothetical ABC transporter ATP-binding protein YadG SW:YADG_ECOLI (P36879) (308 aa) fasta scores: E(): 0%2C 81.8%25 id in 308 aa%2C and to Vibrio cholerae ABC transporter ATP-binding protein Vc0589 TR:Q9KUD3 (EMBL:AE004144) (305 aa) fasta scores: E(): 0%2C71.4%25 id in 304 aa gene gene3351 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3406 YPO3407 YPO3407 yadF yadF 3805329 3805991 + putative carbonic anhydrase Similar to Dictyostelium discoideum carbonic anhydrase CanA TR:Q94473 (EMBL:U66368) (276 aa) fasta scores: E(): 0%2C 64.8%25 id in 216 aa%2C and to Escherichia coli hypothetical 25.1 kDa protein in hpt-panD intergenic region YadF SW:YADF_ECOLI (P36857) (220 aa) fasta scores: E(): 0%2C73.1%25 id in 212 aa gene gene3352 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3407 YPO3408 YPO3408 b0125 b0125 3806145 3806681 - hypoxanthine phosphoribosyltransferase Similar to Escherichia coli hypoxanthine phosphoribosyltransferase Hpt or B0125 SW:HPRT_ECOLI (P36766) (182 aa) fasta scores: E(): 0%2C 87.1%25 id in 178 aa%2Cand to Salmonella typhimurium hypoxanthine phosphoribosyltransferase Hpt SW:HPRT_SALTY (O33799) (178 aa) fasta scores: E(): 0%2C 87.6%25 id in 178 aa gene gene3353 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3408 YPO3409 YPO3409 yacK yacK 3806901 3808502 - putative exported protein Similar to Escherichia coli probable blue-copper protein YacK precursor SW:YACK_ECOLI (P36649) (516 aa) fasta scores: E(): 0%2C 65.0%25 id in 531 aa%2C and to Salmonella typhimurium SufI protein precursor SW:SUFI_SALTY (P40799) (470 aa) fasta scores: E(): 0%2C 32.2%25 id in 522 aa gene gene3354 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3409 YPO3410 YPO3410 yacC yacC 3808819 3809166 + putative exported protein Similar to Escherichia coli hypothetical 12.8 kDa protein in speE-gcd intergenic region precursor YacC SW:YACC_ECOLI (P23838) (115 aa) fasta scores: E(): 8.1e-33%2C71.2%25 id in 111 aa%2C and to Klebsiella pneumoniae pullulanase secretion protein PulS precursor SW:PULS_KLEPN (P20440) (125 aa) fasta scores: E(): 0.0052%2C 28.6%25 id in 105 aa%2C and to Erwinia chrysanthemi OutS protein precursor SW:OUTS_ERWCH (Q01567) (133 aa) fasta scores: E(): 0.0055%2C31.3%25 id in 96 aa gene gene3355 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3410 YPO3411 YPO3411 speE speE 3809283 3810173 + spermidine synthase Similar to Escherichia coli spermidine synthase SpeE SW:SPEE_ECOLI (P09158) (287 aa) fasta scores: E(): 0%2C 80.4%25 id in 286 aa%2C and to Pseudomonas aeruginosa spermidine synthase SpeE or Pa1687 SW:SPEE_PSEAE (Q9X6R0) (286 aa) fasta scores: E(): 0%2C 62.5%25 id in 277 aa gene gene3356 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3411 YPO3412 YPO3412 speD speD 3810251 3811045 + S-adenosylmethionine decarboxylase proenzyme Similar to Escherichia coli S-adenosylmethionine decarboxylase proenzyme SpeD SW:DCAM_ECOLI (P09159) (264 aa) fasta scores: E(): 0%2C 85.6%25 id in 264 aa%2C and to Pseudomonas aeruginosa S-adenosylmethionine decarboxylase proenzyme Sped or Pa0654 TR:AAG04043 (EMBL:AE004500) (264 aa) fasta scores: E(): 0%2C 70.9%25 id in 261 aa gene gene3357 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3412 YPO3413 YPO3413 yddG yddG 3811483 3812391 + putative membrane protein Similar to Escherichia coli hypothetical 29.4 kDa protein in narU-fdnG intergenic region YddG SW:YDDG_ECOLI (P46136) (274 aa) fasta scores: E(): 0%2C 39.9%25 id in 278 aa%2Cand to Vibrio cholerae hypothetical protein Vca0835 TR:Q9KLB1 (EMBL:AE004411) (328 aa) fasta scores: E(): 0%2C41.0%25 id in 293 aa gene gene3358 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3413 YPO3414 YPO3414 YPO3414 3812502 3812861 - conserved hypothetical protein Similar to Escherichia coli hypothetical protein YacL SW:YACL_ECOLI (P45567) (120 aa) fasta scores: E(): 0%2C70.6%25 id in 119 aa%2C and to Pasteurella multocida hypothetical protein PM0457 TR:AAK02541 (EMBL:AE006081) (118 aa) fasta scores: E(): 4.4e-14%2C 41.7%25 id in 120 aa gene gene3359 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3414 YPO3415 YPO3415 acnB acnB 3813160 3815757 - aconitate hydratase 2 Similar to Escherichia coli aconitate hydratase 2 AcnB SW:ACO2_ECOLI (P36683) (865 aa) fasta scores: E(): 0%2C90.3%25 id in 865 aa%2C and to Vibrio cholerae aconitate hydratase 2 Vc0604 TR:Q9KUB8 (EMBL:AE004145) (865 aa) fasta scores: E(): 0%2C 81.2%25 id in 862 aa gene gene3360 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3415 YPO3416 YPO3416 tnp tnp 3816327 3816785 - transposase for the IS1541 insertion element Similar to Salmonella typhimurium%2C and Salmonella typhi transposase for insertion sequence IS200 TnpA SW:T200_SALTY (Q57334) (152 aa) fasta scores: E(): 0%2C 94.1%25 id in 152 aa. Identical to the Yersinia pseudotuberculosis IS1541-like element transposase TnpTR:Q9X9F5 (EMBL:AJ238014) (152 aa) fasta scores: E(): 0%2C 100.0%25 id in 152 aa gene gene3361 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3416 YPO3417 YPO3417 lpd lpd 3817028 3818455 - dihydrolipoamide dehydrogenase component of pyruvate dehydrogenase complex Similar to Escherichia coli dihydrolipoamide dehydrogenase LpdA or Lpd SW:DLDH_ECOLI (P00391) (473 aa) fasta scores: E(): 0%2C 93.9%25 id in 473 aa%2C and to Vibrio cholerae pyruvate dehydrogenase%2C E3 component%2C lipoamide dehydrogenase Vc2412 TR:Q9KPF6 (EMBL:AE004311) (475 aa) fasta scores: E(): 0%2C 86.5%25 id in 474 aa gene gene3362 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3417 YPO3418 YPO3418 aceF aceF 3818758 3820287 - dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex Similar to Escherichia coli dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex AceF SW:ODP2_ECOLI (P06959) (629 aa) fasta scores: E(): 0%2C 79.4%25 id in 525 aa%2C and to Haemophilus influenzae dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex AceF or Hi1232 SW:ODP2_HAEIN (P45118) (567 aa) fasta scores: E(): 0%2C 65.8%25 id in 567 aa gene gene3363 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3418 YPO3419 YPO3419 aceE aceE 3820301 3822964 - pyruvate dehydrogenase E1 component Similar to Escherichia coli pyruvate dehydrogenase E1 component AceE SW:ODP1_ECOLI (P06958) (886 aa) fasta scores: E(): 0%2C 89.2%25 id in 886 aa%2C and to Vibrio cholerae pyruvate dehydrogenase E1 component Vc2414 TR:Q9KPF4 (EMBL:AE004311) (886 aa) fasta scores: E(): 0%2C 72.8%25 id in 889 aa gene gene3364 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3419 YPO3420 YPO3420 aceC aceC 3823160 3823924 - pyruvate dehydrogenase complex repressor Similar to Escherichia coli pyruvate dehydrogenase complex repressor PdhR or GenA or AceC SW:PDHR_ECOLI (P06957) (254 aa) fasta scores: E(): 0%2C 86.2%25 id in 253 aa%2Cand to Salmonella typhimurium PdhR protein TR:Q9L4H9 (EMBL:AJ242516) (254 aa) fasta scores: E(): 0%2C 85.4%25 id in 253 aa gene gene3365 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3420 YPO3421 YPO3421 aroP aroP 3824787 3826184 + aromatic amino acid transport protein Similar to Escherichia coli aromatic amino acid transport protein AroP SW:AROP_ECOLI (P15993) (457 aa) fasta scores: E(): 0%2C 75.6%25 id in 451 aa%2C and to Salmonella typhimurium AroP protein TR:Q9L4I0 (EMBL:AJ242516) (457 aa) fasta scores: E(): 0%2C 74.9%25 id in 451 aa. Similar to YPO1743 (77.8%25 identity in 445 aa overlap) gene gene3366 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3421 YPO3422 YPO3422 ampE ampE 3826602 3827456 - putative membrane-bound sensory transducer in beta-lactamase regulation Similar to Escherichia coli AmpE protein SW:AMPE_ECOLI (P13017) (284 aa) fasta scores: E(): 0%2C 64.4%25 id in 284 aa%2C and to Salmonella typhimurium AmpE protein TR:Q9L4I3 (EMBL:AJ242516) (284 aa) fasta scores: E(): 0%2C63.0%25 id in 284 aa gene gene3367 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3422 YPO3423 YPO3423 ampD ampD 3827746 3828297 - putative signalling protein in beta-lactamase regulation Similar to Escherichia coli AmpD protein SW:AMPD_ECOLI (P13016) (183 aa) fasta scores: E(): 0%2C 67.8%25 id in 171 aa%2C and to Salmonella typhimurium AmpD protein TR:Q9L4I4 (EMBL:AJ242516) (187 aa) fasta scores: E(): 0%2C67.8%25 id in 171 aa gene gene3368 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3423 YPO3424 YPO3424 nadC nadC 3828410 3829318 + nicotinate-nucleotide pyrophosphorylase [carboxylating] Similar to Escherichia coli nicotinate-nucleotide pyrophosphorylase [carboxylating] NadC SW:NADC_ECOLI (P30011) (296 aa) fasta scores: E(): 0%2C 68.2%25 id in 302 aa%2Cand to Salmonella typhimurium nicotinate-nucleotide pyrophosphorylase [carboxylating] NadC SW:NADC_SALTY (P30012) (296 aa) fasta scores: E(): 0%2C 72.8%25 id in 301 aa gene gene3369 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3424 YPO3425 YPO3425 ppdD ppdD 3829521 3829985 + putative prepilin peptidase dependent protein D precursor Similar to Escherichia coli prepilin peptidase dependent protein D precursor PpdD SW:PPDD_ECOLI (P36647) (146 aa) fasta scores: E(): 7.2e-32%2C 56.7%25 id in 141 aa%2Cand to Salmonella typhimurium PpdD protein TR:Q9L4I6 (EMBL:AJ242516) (145 aa) fasta scores: E(): 4.2e-30%2C 55.0%25 id in 140 aa gene gene3370 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3425 YPO3426 YPO3426 hofB hofB 3829978 3831516 + putative type II secretion system protein Similar to Escherichia coli protein transport protein HofB or HopB SW:HOFB_ECOLI (P36645) (461 aa) fasta scores: E(): 0%2C 45.3%25 id in 490 aa%2C and to Aeromonas salmonicida type IV pilus assembly protein TapB TR:O85279 (EMBL:AF059248) (568 aa) fasta scores: E(): 0%2C 43.5%25 id in 494 aa gene gene3371 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3426 YPO3427 YPO3427 hofC hofC 3831513 3832712 + putative type II secretion system protein Similar to Escherichia coli protein transport protein HofC or HopC SW:HOFC_ECOLI (P36646) (400 aa) fasta scores: E(): 0%2C 38.9%25 id in 398 aa%2C and to Pseudomonas aeruginosa fimbrial assembly protein PilC SW:PILC_PSEAE (P22609) (406 aa) fasta scores: E(): 0%2C 34.2%25 id in 401 aa gene gene3372 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3427 YPO3428 YPO3428 guaC guaC 3833139 3834182 - GMP reductase Similar to Escherichia coli GMP reductase GuaC SW:GUAC_ECOLI (P15344) (346 aa) fasta scores: E(): 0%2C 84.3%25 id in 344 aa%2C and to Vibrio cholerae GMP reductase Vca0197 TR:Q9KMW9 (EMBL:AE004359) (347 aa) fasta scores: E(): 0%2C74.1%25 id in 347 aa gene gene3373 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3428 YPO3429 YPO3429 YPO3429 3834223 3834468 + hypothetical protein no significant database hits gene gene3374 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3429 YPO3430 YPO3430 YPO3430 3834478 3835098 + conserved hypothetical protein Similar to Escherichia coli protein YacE SW:YACE_ECOLI (P36679) (206 aa) fasta scores: E(): 0%2C 64.6%25 id in 198 aa%2C and to Vibrio cholerae hypothetical protein VC2427 TR:Q9KPE3 (EMBL:AE004312) (213 aa) fasta scores: E(): 0%2C 56.6%25 id in 198 aa gene gene3375 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3430 YPO3431 YPO3431 YPO3431 3835095 3835847 + conserved hypothetical protein Similar to Escherichia coli hypothetical protein YacF SW:YACF_ECOLI (P36680) (247 aa) fasta scores: E(): 0%2C67.6%25 id in 247 aa%2C and to Vibrio cholerae hypothetical protein VC2428 TR:Q9KPE2 (EMBL:AE004312) (246 aa) fasta scores: E(): 0%2C 41.3%25 id in 247 aa gene gene3376 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3431 YPO3432 YPO3432 YPO3432 3836033 3836239 + conserved hypothetical protein Similar to Escherichia coli hypothetical protein YacG SW:YACG_ECOLI (P36681) (50 aa) fasta scores: E(): 3e-14%2C 78.7%25 id in 47 aa%2C and to Vibrio cholerae hypothetical protein VC2429 TR:Q9KPE1 (EMBL:AE004312) (65 aa) fasta scores: E(): 1.5e-15%2C 61.9%25 id in 63 aa gene gene3377 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3432 YPO3433 YPO3433 tnp tnp 3836429 3836887 - transposase for the IS1541 insertion element Similar to Salmonella typhimurium and Salmonella typhi transposase for insertion sequence IS200%2C TnpA%2CSW:TNPA_SALTY (Q57334) (152 aa) fasta scores: E(): 0%2C 93.4%25 id in 152 aa. Almost identical to the Yersinia pseudotuberculosis IS1541-like element transposase Tnp TR:Q9X9F5 (EMBL:AJ238014) (152 aa) fasta scores: E(): 0%2C99.3%25 id in 152 aa gene gene3378 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3433 YPO3434 YPO3434 y1093 y1093 3836998 3838020 + transposase for insertion sequence IS100 Similar to Escherichia coli transposase for insertion sequence element IS21 IstA SW:ISTA_ECOLI (P15025) (390 aa) fasta scores: E(): 3e-27%2C 33.1%25 id in 329 aa. Identical to the previously sequenced Yersinia pestis%2CYersinia pseudotuberculosis%2C and Escherichia coli pesticin plasmid insertion sequence transposase Y1055 TR:P74993 (EMBL:U59875) (340 aa) fasta scores: E(): 0%2C 100.0%25 id in 340 aa gene gene3379 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3434 YPO3435 YPO3435 ypmt1.57c ypmt1.57c 3838017 3838799 + insertion sequence IS100%2C ATP-binding protein Similar to Escherichia coli insertion sequence IS21 putative ATP-binding protein%2C IstB SW:ISTB_ECOLI (P15026) (265 aa) fasta scores: E(): 0%2C 47.4%25 id in 249 aa. Also almost identical to Yersinia pestis and Escherichia coli putative IS100 transposase ypmt1.57c TR:Q9R3L5 (EMBL:AL117211) (260 aa) fasta scores: E(): 0%2C 99.6%25 id in 260 aa. gene gene3380 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3435 YPO3436 YPO3436 YPO3436 3838865 3839959 - hypothetical protein (pseudogene) This CDS is disrupted by the insertion of IS100 element. Its N-terminal region is similar to the N-terminal regions of Neisseria meningitidis hypothetical protein Nma0428 TR:Q9JWD7 (EMBL:AL162753) (548 aa) fasta scores: E(): 0.00011%2C 29.1%25 id in 223 aa%2C and to the N-terminal regions of several DNA mismatch repair proteins pseudogene gene3381 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3436 YPO3437 YPO3437 YPO3437 3839952 3841862 - conserved hypothetical protein Shows weak similarity to Helicobacter pylori hypothetical protein HP1409 TR:O34810 (EMBL:AE000641) (578 aa) fasta scores: E(): 0.0003%2C 21.9%25 id in 590 aa%2C and to Streptomyces coelicolor hypothetical protein SC6G9.04c TR:Q9XAG9 (EMBL:AL079356) (565 aa) fasta scores: E(): 0.00054%2C 21.4%25 id in 590 aa gene gene3382 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3437 YPO3438 YPO3438 intB intB 3842016 3843275 - integrase Similar to Escherichia coli prophage P4 integrase IntB SW:INTB_ECOLI (P39347) (396 aa) fasta scores: E(): 0%2C78.1%25 id in 392 aa%2C and to Yersinia pestis Int protein TR:Q9Z3B4 (EMBL:AL031866) (420 aa) fasta scores: E(): 0%2C55.0%25 id in 416 aa. Similar to YPO1917 (55.0%25 identity in 416 aa overlap) gene gene3383 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3438 YPO3439 YPO3439 YPO3439 3843663 3844739 - putative membrane protein Similar to Escherichia coli hypothetical 39.8 kDa protein in pepA-gntV intergenic region YjgQ SW:YJGQ_ECOLI (P39341) (361 aa) fasta scores: E(): 0%2C 76.7%25 id in 356 aa%2Cand to Haemophilus influenzae hypothetical protein Hi1703 SW:YJGQ_HAEIN (P45332) (358 aa) fasta scores: E(): 0%2C 52.2%25 id in 358 aa gene gene3384 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3439 YPO3440 YPO3440 YPO3440 3844739 3845833 - putative membrane protein Similar to Escherichia coli hypothetical 40.4 kDa protein in pepA-gntV intergenic region YjgP SW:YJGP_ECOLI (P39340) (366 aa) fasta scores: E(): 0%2C 70.7%25 id in 365 aa%2Cand to Haemophilus influenzae hypothetical protein Hi1704 SW:YJGP_HAEIN (P45333) (372 aa) fasta scores: E(): 0%2C 49.0%25 id in 357 aa gene gene3385 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3440 YPO3441 YPO3441 carP carP 3846113 3847624 + cytosol aminopeptidase Similar to Escherichia coli cytosol aminopeptidase PepA or XerB or CarP SW:AMPA_ECOLI (P11648) (503 aa) fasta scores: E(): 0%2C 91.5%25 id in 503 aa%2C and to Vibrio cholerae cytosol aminopeptidase PepA or Vc2501 SW:AMPA_VIBCH (Q9K2W5) (503 aa) fasta scores: E(): 0%2C 80.1%25 id in 498 aa gene gene3386 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3441 YPO3442 YPO3442 holC holC 3847775 3848224 + DNA polymerase III%2C chi subunit Similar to Escherichia coli DNA polymerase III%2C chi subunit HolC SW:HOLC_ECOLI (P28905) (147 aa) fasta scores: E(): 0%2C 71.7%25 id in 145 aa gene gene3387 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3442 YPO3443 YPO3443 valS valS 3848237 3851134 + valyl-tRNA synthetase Similar to Escherichia coli valyl-tRNA synthetase ValS SW:SYV_ECOLI (P07118) (951 aa) fasta scores: E(): 0%2C87.3%25 id in 951 aa%2C and to Vibrio cholerae valyl-tRNA synthetase ValS or Vc2503 TR:Q9KP73 (EMBL:AE004320) (953 aa) fasta scores: E(): 0%2C 75.0%25 id in 953 aa gene gene3388 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3443 YPO3444 YPO3444 YPO3444 3851277 3851780 + putative acetyltransferase Similar to Escherichia coli hypothetical 18.6 kDa protein in argI-valS intergenic region YjgM or B4256 SW:YJGM_ECOLI (P39337) (167 aa) fasta scores: E(): 0%2C 66.5%25 id in 167 aa%2C and to Salmonella typhimurium hypothetical 18.3 kDa protein in miaE 3'region YjgM SW:YJGM_SALTY (Q08021) (167 aa) fasta scores: E(): 0%2C 68.3%25 id in 167 aa gene gene3389 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3444 YPO3445 YPO3445 YPO3445 3852287 3852718 - conserved hypothetical protein Similar to Escherichia coli hypothetical protein YjgD SW:YJGD_ECOLI (P37163) (138 aa) fasta scores: E(): 0%2C76.2%25 id in 143 aa%2C and to Salmonella typhimurium hypothetical protein YjgD SW:YJGD_SALTY (Q08019) (138 aa) fasta scores: E(): 0%2C 76.2%25 id in 143 aa gene gene3390 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3445 YPO3446 YPO3446 argI argI 3852930 3853937 + ornithine carbamoyltransferase chain I Similar to Escherichia coli ornithine carbamoyltransferase chain I ArgI SW:OTC1_ECOLI (P04391) (333 aa) fasta scores: E(): 0%2C 80.1%25 id in 331 aa%2C and to Vibrio cholerae ornithine carbamoyltransferase Vc2508 TR:Q9KP68 (EMBL:AE004321) (334 aa) fasta scores: E(): 0%2C71.0%25 id in 328 aa gene gene3391 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3446 YPO3447 YPO3447 YPO3447 3854244 3854702 - conserved hypothetical protein Similar to Escherichia coli protein YjgK SW:YJGK_ECOLI (P39335) (150 aa) fasta scores: E(): 0%2C 71.1%25 id in 149 aa%2C and to Vibrio cholerae hypothetical protein VC1555 TR:Q9KRT1 (EMBL:AE004233) (170 aa) fasta scores: E(): 1.8e-20%2C 43.3%25 id in 150 aa gene gene3392 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3447 YPO3448 YPO3448 YPO3448 3855341 3856908 + putative extracellular solute-binding protein (pseudogene) Similar to Escherichia coli O157:H7 putative hemin-binding lipoprotein Z2223 TR:AAG56282 (EMBL:AE005357) (516 aa) fasta scores: E(): 1.6e-24%2C 31.0%25 id in 506 aa%2Cand to Escherichia coli putative binding protein YddS precursor SW:YDDS_ECOLI (P76128) (516 aa) fasta scores: E(): 2.7e-24%2C 31.7%25 id in 499 aa. There is a frameshift and a stop codon following codon 390. The frameshift occurs within a homopolymeric tract of 7G. The sequence has been checked and is believed to be correct pseudogene gene3393 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3448 YPO3450 YPO3450 YPO3450 3857004 3858053 + putative transporter%2C permease protein Similar to Escherichia coli hypothetical ABC transporter permease protein YddR SW:YDDR_ECOLI (P77308) (340 aa) fasta scores: E(): 0%2C 44.7%25 id in 329 aa%2C and to E. coli dipeptide transport system permease protein DppB SW:DPPB_ECOLI (P37316) (339 aa) fasta scores: E(): 0%2C 38.5%25 id in 335 aa%2C and to Pseudomonas aeruginosa probable permease of ABC transporter Pa4503 TR:AAG07891 (EMBL:AE004864) (336 aa) fasta scores: E(): 0%2C 41.5%25 id in 335 aa gene gene3394 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3450 YPO3451 YPO3451 YPO3451 3858072 3858908 + putative transporter%2C permease protein Similar to Escherichia coli dipeptide transport system permease protein DppC SW:DPPC_ECOLI (P37315) (300 aa) fasta scores: E(): 0%2C 42.3%25 id in 279 aa%2C and to Pseudomonas aeruginosa probable permease of ABC transporter Pa4504 TR:AAG07892 (EMBL:AE004864) (303 aa) fasta scores: E(): 0%2C 43.4%25 id in 279 aa gene gene3395 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3451 YPO3452 YPO3452 YPO3452 3858901 3859779 + putative ABC transporter transporter%2C ATP-binding protein Similar to Escherichia coli dipeptide transport ATP-binding protein DppD SW:DPPD_ECOLI (P37314) (327 aa) fasta scores: E(): 1.9e-26%2C 42.1%25 id in 271 aa%2C and to Pyrococcus abyssi peptide ABC transporter ATP-binding protein Pab1874 TR:Q9V0P6 (EMBL:AJ248285) (329 aa) fasta scores: E(): 2.2e-31%2C 37.7%25 id in 289 aa gene gene3396 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3452 YPO3453 YPO3453 YPO3453 3859781 3860482 + putative ABC transporter%2C ATP-binding protein Similar to Helicobacter pylori dipeptide ABC transporter%2C ATP-binding protein Hp0302 TR:O25073 (EMBL:AE000548) (268 aa) fasta scores: E(): 1.6e-32%2C 44.4%25 id in 223 aa%2C and to Bacillus subtilis oligopeptide transport ATP-binding protein AppF SW:APPF_BACSU (P42065) (329 aa) fasta scores: E(): 1.5e-30%2C 42.6%25 id in 223 aa gene gene3397 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3453 YPO3454 YPO3454 nrdD nrdD 3860916 3863054 + anaerobic ribonucleoside-triphosphate reductase Similar to Escherichia coli anaerobic ribonucleoside-triphosphate reductase NrdD SW:NRDD_ECOLI (P28903) (712 aa) fasta scores: E(): 0%2C 86.0%25 id in 709 aa%2Cand to Salmonella typhimurium anaerobic ribonucleoside-triphosphate reductase NrdD TR:Q9L646 (EMBL:AF242390) (712 aa) fasta scores: E(): 0%2C 87.2%25 id in 709 aa gene gene3398 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3454 YPO3455 YPO3455 nrdG nrdG 3863261 3863695 + anaerobic ribonucleoside-triphosphate reductase activating protein Similar to Escherichia coli anaerobic ribonucleoside-triphosphate reductase activating protein NrdG SW:NRDG_ECOLI (P39329) (154 aa) fasta scores: E(): 0%2C79.2%25 id in 144 aa%2C and to Salmonella typhimurium anaerobic ribonucleoside-triphosphate reductase activating protein NrdG TR:Q9L645 (EMBL:AF242390) (154 aa) fasta scores: E(): 0%2C 80.6%25 id in 144 aa gene gene3399 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3455 YPO3456 YPO3456 phnF phnF 3864023 3864748 + probable gntR-family transcriptional regulatory protein Similar to Escherichia coli PhnF protein SW:PHNF_ECOLI (P16684) (241 aa) fasta scores: E(): 0%2C 73.4%25 id in 241 aa%2C and to Pseudomonas aeruginosa probable transcriptional regulator PA3381 TR:AAG06769 (EMBL:AE004759) (240 aa) fasta scores: E(): 9e-26%2C 43.3%25 id in 233 aa gene gene3400 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3456 YPO3457 YPO3457 phnG phnG 3864749 3865225 + PhnG protein Similar to Escherichia coli PhnG protein SW:PHNG_ECOLI (P16685) (150 aa) fasta scores: E(): 6e-22%2C50.6%25 id in 158 aa gene gene3401 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3457 YPO3458 YPO3458 phnH phnH 3865225 3865851 + PhnH protein Similar to Escherichia coli PhnH protein SW:PHNH_ECOLI (P16686) (194 aa) fasta scores: E(): 8.8e-25%2C48.8%25 id in 209 aa gene gene3402 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3458 YPO3459 YPO3459 phnI phnI 3865851 3867029 + PhnI protein Similar to Escherichia coli PhnI protein SW:PHNI_ECOLI (P16687) (354 aa) fasta scores: E(): 0%2C 74.5%25 id in 353 aa%2C and to Rhizobium meliloti PhnI protein SW:PHNI_RHIME (Q52986) (368 aa) fasta scores: E(): 0%2C 59.8%25 id in 363 aa gene gene3403 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3459 YPO3460 YPO3460 phnJ phnJ 3867022 3867903 + PhnJ protein Similar to Escherichia coli PhnJ protein SW:PHNJ_ECOLI (P16688) (281 aa) fasta scores: E(): 0%2C 85.3%25 id in 279 aa%2C and to Rhizobium meliloti PhnJ protein SW:PHNJ_RHIME (Q52987) (297 aa) fasta scores: E(): 0%2C 75.4%25 id in 284 aa gene gene3404 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3460 YPO3461 YPO3461 phnK phnK 3867903 3868694 + phosphonates transport ATP-binding protein Similar to Escherichia coli phosphonates transport ATP-binding protein PhnK SW:PHNK_ECOLI (P16678) (252 aa) fasta scores: E(): 0%2C 85.5%25 id in 255 aa%2C and to Rhizobium meliloti PhnK TR:Q52988 (EMBL:M96263) (258 aa) fasta scores: E(): 0%2C 66.8%25 id in 253 aa gene gene3405 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3461 YPO3462 YPO3462 phnL phnL 3869083 3869802 + phosphonates transport ATP-binding protein Similar to Escherichia coli phosphonates transport ATP-binding protein PhnL SW:PHNL_ECOLI (P16679) (226 aa) fasta scores: E(): 0%2C 76.5%25 id in 221 aa gene gene3406 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3462 YPO3463 YPO3463 phnM phnM 3869799 3870935 + PhnM protein Similar to Escherichia coli PhnM protein SW:PHNM_ECOLI (P16689) (378 aa) fasta scores: E(): 0%2C 73.5%25 id in 378 aa%2C and to Rhizobium leguminosarum PhnM TR:Q9XAT4 (EMBL:AJ243305) (376 aa) fasta scores: E(): 8.5e-33%2C 32.6%25 id in 386 aa gene gene3407 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3463 YPO3464 YPO3464 phnN phnN 3870935 3871516 + PhnN protein Similar to Escherichia coli PhnN protein SW:PHNN_ECOLI (P16690) (185 aa) fasta scores: E(): 0%2C 56.5%25 id in 177 aa gene gene3408 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3464 YPO3465 YPO3465 phnP phnP 3871507 3872259 + PhnP protein Similar to Escherichia coli PhnP protein SW:PHNP_ECOLI (P16692) (252 aa) fasta scores: E(): 0%2C 50.6%25 id in 247 aa gene gene3409 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3465 YPO3466 YPO3466 YPO3466 3872272 3872910 - conserved hypothetical protein Similar to Escherichia coli hypothetical protein YraR SW:YRAR_ECOLI (P45469) (226 aa) fasta scores: E(): 0%2C53.6%25 id in 207 aa%2C and to Pseudomonas aeruginosa hypothetical protein PA4017 TR:AAG07404 (EMBL:AE004818) (213 aa) fasta scores: E(): 6.3e-31%2C 46.3%25 id in 205 aa gene gene3410 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3466 YPO3467 YPO3467 YPO3467 3873062 3873505 - conserved hypothetical protein Similar to Escherichia coli hypothetical protein YhbP SW:YHBP_ECOLI (P45471) (147 aa) fasta scores: E(): 1.9e-27%2C 46.8%25 id in 139 aa%2C and to Pasteurella multocida hypothetical protein PM1958 TR:AAK04042 (EMBL:AE006232) (149 aa) fasta scores: E(): 3.1e-11%2C 29.3%25 id in 133 aa gene gene3411 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3467 YPO3468 YPO3468 YPO3468 3873604 3874770 - hypothetical protein no significant database hits gene gene3412 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3468 YPO3469 YPO3469 YPO3469 3874785 3875879 - putative sugar ABC transporter%2C ATP-binding protein Similar to Sphingomonas sp. AlgS TR:Q9KWT9 (EMBL:AB011415) (363 aa) fasta scores: E(): 0%2C 51.8%25 id in 357 aa%2C and to Rhizobium sp. probable ABC transporter ATP-binding protein Y4oS SW:Y4OS_RHISN (P55604) (371 aa) fasta scores: E(): 0%2C 56.0%25 id in 359 aa gene gene3413 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3469 YPO3470 YPO3470 YPO3470 3875891 3876730 - sugar transport system%2C permease protein Similar to Synechocystis sp. lactose transport system permease protein LacG or Slr1723 TR:P73854 (EMBL:D90910) (270 aa) fasta scores: E(): 1.1e-29%2C 36.3%25 id in 281 aa%2C and to Thermotoga maritima sugar ABC transporter%2C permease protein Tm0430 TR:Q9WYR1 (EMBL:AE001721) (271 aa) fasta scores: E(): 9.7e-28%2C 31.9%25 id in 270 aa gene gene3414 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3470 YPO3471 YPO3471 YPO3471 3876749 3877633 - sugar transport system%2C permease protein Similar to Synechocystis sp. lactose transport system permease protein LacF or Slr1202 TR:P73352 (EMBL:D90905) (298 aa) fasta scores: E(): 0%2C 34.2%25 id in 284 aa%2C and to Bacillus halodurans sugar transport system Bh3689 TR:Q9K6N9 (EMBL:AP001519) (300 aa) fasta scores: E(): 4.2e-32%2C 35.7%25 id in 277 aa gene gene3415 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3471 YPO3472 YPO3472 YPO3472 3877641 3878954 - putative sugar binding protein Similar to Thermococcus litoralis%2C and Pyrococcus furiosus trehalose/maltose binding protein MalE TR:O51923 (EMBL:AF012836) (450 aa) fasta scores: E(): 8.6e-17%2C 28.6%25 id in 399 aa%2C and to Bacillus stearothermophilus peripheral protein TR:Q9ZFM6 (EMBL:AF098273) (493 aa) fasta scores: E(): 5.6e-14%2C 29.1%25 id in 316 aa gene gene3416 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3472 YPO3473 YPO3473 YPO3473 3879512 3880738 + putative exported protein no significant database matches gene gene3417 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3473 YPO3474 YPO3474 YPO3474 3880762 3882780 + hypothetical protein no significant database hits gene gene3418 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3474 YPO3475 YPO3475 YPO3475 3883011 3883298 + conserved hypothetical protein Similar to Escherichia coli hypothetical protein YhbQ SW:YHBQ_ECOLI (P45472) (100 aa) fasta scores: E(): 1.3e-20%2C 73.1%25 id in 78 aa%2C and to Vibrio cholerae hypothetical protein VCA0739 TR:Q9KLK4 (EMBL:AE004403) (101 aa) fasta scores: E(): 5.6e-17%2C 61.2%25 id in 85 aa gene gene3419 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3475 YPO3476 YPO3476 YPO3476 3883473 3883979 - putative acetyltransferase Similar to Escherichia coli hypothetical 18.5 kDa protein in sohA-mtr intergenic region YhbS SW:YHBS_ECOLI (P45473) (167 aa) fasta scores: E(): 0%2C 69.0%25 id in 168 aa%2Cand to Vibrio cholerae putative acetyltransferase Vc0655 TR:Q9KU68 (EMBL:AE004151) (183 aa) fasta scores: E(): 4.4e-29%2C 52.7%25 id in 165 aa gene gene3420 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3476 YPO3477 YPO3477 YPO3477 3883973 3884494 - putative lipid carrier protein Similar to Escherichia coli hypothetical 19.7 kDa protein in sohA-mtr intergenic region YhbT SW:YHBT_ECOLI (P45474) (174 aa) fasta scores: E(): 0%2C 71.9%25 id in 160 aa%2Cand to Vibrio cholerae hypothetical protein Vc0654 TR:Q9KU69 (EMBL:AE004151) (175 aa) fasta scores: E(): 0%2C54.0%25 id in 161 aa gene gene3421 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3477 YPO3478 YPO3478 YPO3478 3884575 3884700 + hypothetical protein doubtful CDS with no significant database hits. Very low %25G+C gene gene3422 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3478 YPO3479 YPO3479 YPO3479 3884810 3885805 + putative protease Similar to Proteus mirabilis STM-protease A TR:Q9ZA85 (EMBL:AF088981) (334 aa) fasta scores: E(): 0%2C83.8%25 id in 334 aa%2C and to Escherichia coli putative protease precursor YhbU SW:YHBU_ECOLI (P45527) (331 aa) fasta scores: E(): 0%2C 88.5%25 id in 331 aa gene gene3423 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3479 YPO3480 YPO3480 YPO3480 3885817 3886695 + conserved hypothetical protein Similar to Escherichia coli hypothetical protein YhbV SW:YHBV_ECOLI (P45475) (298 aa) fasta scores: E(): 0%2C75.9%25 id in 290 aa%2C and to Vibrio cholerae hypothetical protein VC0651 TR:Q9KU72 (EMBL:AE004151) (321 aa) fasta scores: E(): 0%2C 66.7%25 id in 288 aa gene gene3424 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3480 YPO3481 YPO3481 ibeB ibeB 3886836 3888242 - probable outer membrane efflux lipoprotein Similar to Escherichia coli probable outer membrane lipoprotein IbeB precursor SW:IBEB_ECOLI (P77211) (457 aa) fasta scores: E(): 0%2C 38.8%25 id in 464 aa%2C and to Pseudomonas aeruginosa outer membrane protein OprM precursor or OprK or Pa0427 TR:AAG03816 (EMBL:L23839) (485 aa) fasta scores: E(): 0%2C 48.0%25 id in 469 aa gene gene3425 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3481 YPO3482 YPO3482 YPO3482 3888244 3891369 - multidrug efflux protein Similar to Escherichia coli acriflavin resistance protein B AcrB or AcrE SW:ACRB_ECOLI (P31224) (1049 aa) fasta scores: E(): 0%2C 57.8%25 id in 1040 aa%2C and to Escherichia coli acriflavin resistance protein F AcrF or EnvD SW:ACRF_ECOLI (P24181) (1034 aa) fasta scores: E(): 0%2C56.6%25 id in 1033 aa%2C and to Pseudomonas aeruginosa multidrug resistance protein MexB or Pa0426 TR:AAG03815 (EMBL:L11616) (1046 aa) fasta scores: E(): 0%2C 56.1%25 id in 1034 aa. Similar to YPO3133 (57.8%25 identity in 1044 aa overlap) and to YPO3043 (58.4%25 identity in 1035 aa overlap) gene gene3426 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3482 YPO3483 YPO3483 YPO3483 3891373 3892533 - multidrug efflux protein Similar to Escherichia coli acriflavin resistance protein A precursor AcrA or MtcA or Lir SW:ACRA_ECOLI (P31223) (397 aa) fasta scores: E(): 0%2C 49.4%25 id in 360 aa%2Cand to Escherichia coli acriflavin resistance protein E precursor AcrE or EnvC SW:ACRE_ECOLI (P24180) (385 aa) fasta scores: E(): 0%2C 50.1%25 id in 353 aa. Similar to YPO3132 (50.0%25 identity in 372 aa overlap) gene gene3427 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3483 YPO3484 YPO3484 YPO3484 3893041 3894096 + conserved hypothetical protein Similar to Escherichia coli hypothetical protein YhbW SW:YHBW_ECOLI (P45529) (335 aa) fasta scores: E(): 0%2C70.4%25 id in 335 aa%2C and to Bacillus subtilis hypothetical protein YvbT SW:YVBT_BACSU (O32254) (336 aa) fasta scores: E(): 0%2C 55.5%25 id in 335 aa gene gene3428 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3484 YPO3485 YPO3485 YPO3485 3894351 3894662 - putative transcriptional regulatory protein Similar to Bacteriophage N15 gene 48 Gp48 TR:O64356 (EMBL:AF064539) (95 aa) fasta scores: E(): 0.046%2C 30.2%25 id in 86 aa%2C and to Haemophilus influenzae hypothetical protein HI0659 SW:Y659_HAEIN (P44030) (98 aa) fasta scores: E(): 0.015%2C 28.2%25 id in 78 aa gene gene3429 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3485 YPO3486 YPO3486 YPO3486 3894686 3895054 - conserved hypothetical protein Similar to Haemophilus influenzae hypothetical protein HI0660 SW:Y660_HAEIN (P44031) (119 aa) fasta scores: E(): 0.52%2C 31.1%25 id in 90 aa%2C and to Bacteriophage N15 gene 49 GP49 TR:O64357 (EMBL:AF064539) (103 aa) fasta scores: E(): 0.085%2C 27.7%25 id in 94 aa gene gene3430 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3486 YPO3487 YPO3487 YPO3487 3895097 3895270 - putative membrane protein no significant database matches. doubtful CDS. Very low %25GC content gene gene3431 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3487 YPO3488 YPO3488 csdA csdA 3895290 3897284 - cold-shock dead-box protein A Similar to Escherichia coli cold-shock dead-box protein A DeaD or CsdA or MssB SW:DEAD_ECOLI (P23304) (646 aa) fasta scores: E(): 0%2C 81.1%25 id in 667 aa%2C and to Klebsiella pneumoniae cold-shock dead-box protein A DeaD or CsdA SW:DEAD_KLEPN (P33906) (659 aa) fasta scores: E(): 0%2C81.1%25 id in 667 aa gene gene3432 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3488 YPO3489 YPO3489 nlpI nlpI 3897471 3898355 - lipoprotein NlpI Similar to Escherichia coli lipoprotein NlpI precursor SW:NLPI_ECOLI (P39833) (294 aa) fasta scores: E(): 0%2C 87.1%25 id in 294 aa gene gene3433 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3489 YPO3490 YPO3490 pnp pnp 3898480 3900597 - polyribonucleotide nucleotidyltransferase Similar to Escherichia coli polyribonucleotide nucleotidyltransferase Pnp SW:PNP_ECOLI (P05055) (711 aa) fasta scores: E(): 0%2C 88.4%25 id in 706 aa%2C and to Yersinia enterocolitica polyribonucleotide nucleotidyltransferase Pnp SW:PNP_YEREN (O34275) (706 aa) fasta scores: E(): 0%2C96.7%25 id in 704 aa gene gene3434 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3490 YPO3491 YPO3491 YPO3491 3900864 3901649 - transposase for insertion sequence IS1661 Similar to Escherichia coli insertion sequence IS1397 transposase%2C OrfB TR:Q47310 (EMBL:X92970) (240 aa) fasta scores: E(): 0%2C 53.0%25 id in 234 aa gene gene3435 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3491 YPO3492 YPO3492 YPO3492 3901703 3902218 - insertion element IS1661 DNA-binding protein Similar to Escherichia coli insertion element IS1397 OrfA hypothetical 20.1 kDa protein SW:YI9A_ECOLI (Q47309) (173 aa) fasta scores: E(): 2.3e-20%2C 39.6%25 id in 169 aa gene gene3436 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3492 YPO3493 YPO3493 rpsO rpsO 3902305 3902574 - 30S ribosomal protein S15 Similar to Escherichia coli 30S ribosomal protein S15 RpsO or SecC SW:RS15_ECOLI (P02371) (88 aa) fasta scores: E(): 9.3e-30%2C 86.4%25 id in 88 aa%2C and to Yersinia enterocolitica 30S ribosomal protein S15 RpsO SW:RS15_YEREN (O34274) (88 aa) fasta scores: E(): 4.2e-32%2C 94.3%25 id in 88 aa gene gene3437 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3493 YPO3494 YPO3494 p35 p35 3902696 3903670 - tRNA pseudouridine synthase B Similar to Escherichia coli tRNA pseudouridine synthase B TruB or P35 SW:TRUB_ECOLI (P09171) (314 aa) fasta scores: E(): 0%2C 72.0%25 id in 311 aa%2C and to Yersinia enterocolitica tRNA pseudouridine synthase B TruB SW:TRUB_YEREN (O34273) (309 aa) fasta scores: E(): 0%2C 91.4%25 id in 301 aa gene gene3438 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3494 YPO3495 YPO3495 p15B p15B 3903670 3904080 - ribosome-binding factor A Similar to Escherichia coli ribosome-binding factor A Rbfa or P15B SW:RBFA_ECOLI (P09170) (132 aa) fasta scores: E(): 0%2C 75.6%25 id in 135 aa%2C and to Yersinia enterocolitica ribosome-binding factor A RbfA SW:RBFA_YEREN (O34272) (133 aa) fasta scores: E(): 0%2C 98.5%25 id in 133 aa gene gene3439 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3495 YPO3496 YPO3496 infB infB 3904146 3906800 - translation initiation factor IF2-2 Similar to Escherichia coli translation initiation factor IF-2 InfB or SsyG SW:IF2_ECOLI (P02995) (890 aa) fasta scores: E(): 0%2C 82.8%25 id in 897 aa%2C and to Salmonella typhimurium translation initiation factor IF-2 InfB SW:IF2_SALTY (Q9ZF31) (892 aa) fasta scores: E(): 0%2C 82.9%25 id in 900 aa gene gene3440 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3496 YPO3497 YPO3497 nusA nusA 3906825 3908312 - N utilization substance protein A Similar to Escherichia coli N utilization substance protein A NusA SW:NUSA_ECOLI (P03003) (495 aa) fasta scores: E(): 0%2C 88.5%25 id in 495 aa%2C and to Salmonella typhimurium N utilization substance protein A NusA SW:NUSA_SALTY (P37430) (500 aa) fasta scores: E(): 0%2C 86.2%25 id in 500 aa gene gene3441 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3497 YPO3498 YPO3498 YPO3498 3908334 3908792 - conserved hypothetical protein Similar to Escherichia coli hypothetical protein YhbC SW:YHBC_ECOLI (P03843) (140 aa) fasta scores: E(): 0%2C90.0%25 id in 140 aa%2C and to Vibrio cholerae hypothetical protein VC0641 TR:Q9KU82 (EMBL:AE004150) (151 aa) fasta scores: E(): 0%2C 64.2%25 id in 151 aa gene gene3442 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3498 YPO3499 YPO3499 secG secG 3909318 3909653 - protein-export membrane protein Similar to Escherichia coli protein-export membrane protein SecG SW:SECG_ECOLI (P33582) (110 aa) fasta scores: E(): 1.8e-30%2C 79.1%25 id in 110 aa%2C and to Vibrio cholerae preprotein translocase SecG subunit Vc0640 TR:Q9KU83 (EMBL:AE004150) (111 aa) fasta scores: E(): 3.1e-20%2C 54.9%25 id in 113 aa gene gene3443 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3499 YPO3500 YPO3500 mrsA mrsA 3909876 3911216 - probable phosphoglucomutase/phosphomannomutase Similar to Escherichia coli MrsA protein SW:MRSA_ECOLI (P31120) (445 aa) fasta scores: E(): 0%2C 85.6%25 id in 445 aa%2C and to Vibrio cholerae phosphoglucomutase/phosphomannomutase family protein MrsA Vc0639 TR:Q9KU84 (EMBL:AE004149) (446 aa) fasta scores: E(): 0%2C 75.0%25 id in 444 aa gene gene3444 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3500 YPO3501 YPO3501 dhpS dhpS 3911226 3912059 - dihydropteroate synthase Similar to Escherichia coli dihydropteroate synthase FolP or DhpS SW:DHPS_ECOLI (P26282) (282 aa) fasta scores: E(): 0%2C 75.0%25 id in 276 aa%2C and to Haemophilus influenzae dihydropteroate synthase (FolP-a or Hi1336) and (FolP-b or Hi1464) SW:DHPS_HAEIN (P43776) (275 aa) fasta scores: E(): 0%2C 57.8%25 id in 275 aa gene gene3445 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3501 YPO3502 YPO3502 ftsH ftsH 3912179 3914113 - cell division protein Similar to Escherichia coli cell division protein FtsH or HflB or MrsC or TolZ SW:FTSH_ECOLI (P28691) (644 aa) fasta scores: E(): 0%2C 91.1%25 id in 644 aa%2C and to Vibrio cholerae cell division protein FtsH or Vc0637 TR:Q9KU86 (EMBL:AE004149) (651 aa) fasta scores: E(): 0%2C 78.4%25 id in 644 aa gene gene3446 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3502 YPO3503 YPO3503 ftsJ ftsJ 3914170 3914799 - ribosomal RNA large subunit methyltransferase J Similar to Escherichia coli ribosomal RNA large subunit methyltransferase J RrmJ or FtsJ or MrsF SW:RRMJ_ECOLI (P28692) (209 aa) fasta scores: E(): 0%2C 91.8%25 id in 208 aa%2C and to Haemophilus influenzae ribosomal RNA large subunit methyltransferase J RrmJ or FtsJ or Hi1334 SW:RRMJ_HAEIN (P45162) (209 aa) fasta scores: E(): 0%2C 79.8%25 id in 208 aa gene gene3447 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3503 YPO3504 YPO3504 YPO3504 3914946 3915239 + conserved hypothetical protein Similar to Escherichia coli hypothetical protein YhbY SW:YHBY_ECOLI (P42550) (97 aa) fasta scores: E(): 3.2e-31%2C 80.4%25 id in 97 aa%2C and to Vibrio cholerae hypothetical protein VC0635 TR:Q9KU88 (EMBL:AE004149) (98 aa) fasta scores: E(): 1e-27%2C 73.2%25 id in 97 aa gene gene3448 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3504 YPO3505 YPO3505 greA greA 3915367 3915843 - transcription elongation factor Similar to Escherichia coli transcription elongation factor GreA SW:GREA_ECOLI (P21346) (158 aa) fasta scores: E(): 0%2C 84.2%25 id in 158 aa%2C and to Pasteurella multocida GreA TR:AAK02799 (EMBL:AE006109) (158 aa) fasta scores: E(): 0%2C 77.7%25 id in 157 aa gene gene3449 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3505 YPO3506 YPO3506 dacB dacB 3916101 3917549 + penicillin-binding protein 4 precursor Similar to Escherichia coli penicillin-binding protein 4 precursor DacB SW:PBP4_ECOLI (P24228) (477 aa) fasta scores: E(): 0%2C 79.0%25 id in 482 aa%2C and to Haemophilus influenzae penicillin-binding protein 4 precursor DacB or Hi1330 SW:PBP4_HAEIN (P45161) (479 aa) fasta scores: E(): 0%2C 46.5%25 id in 480 aa gene gene3450 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3506 YPO3507 YPO3507 basR basR 3917555 3918217 + two-component system response regulator Similar to Escherichia coli transcriptional regulatory protein BasR or PmrA SW:BASR_ECOLI (P30843) (222 aa) fasta scores: E(): 0%2C 56.4%25 id in 218 aa%2C and to Salmonella typhimurium transcriptional regulatory protein BasR or PmrA SW:BASR_SALTY (P36556) (222 aa) fasta scores: E(): 0%2C 56.4%25 id in 218 aa gene gene3451 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3507 YPO3508 YPO3508 basS basS 3918214 3919281 + two-component system sensor protein Similar to Escherichia coli sensor protein BasS or PmrB SW:BASS_ECOLI (P30844) (363 aa) fasta scores: E(): 0%2C49.7%25 id in 354 aa%2C and to Salmonella typhimurium sensor protein BasS or PmrB or ParB SW:BASS_SALTY (P36557) (356 aa) fasta scores: E(): 0%2C 50.4%25 id in 349 aa gene gene3452 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3508 YPO3509 YPO3509 YPO3509 3919376 3920548 - putative GTP-binding protein Similar to Escherichia coli hypothetical GTP-binding protein YhbZ SW:YHBZ_ECOLI (P42641) (390 aa) fasta scores: E(): 0%2C 77.7%25 id in 390 aa%2C and to Haemophilus influenzae hypothetical GTP-binding protein HI0877 SW:YHBZ_HAEIN (P44915) (390 aa) fasta scores: E(): 0%2C 71.2%25 id in 389 aa gene gene3453 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3509 YPO3510 YPO3510 YPO3510 3920549 3921535 - putative membrane protein Similar to Escherichia coli hypothetical 35.0 kDa protein in dacB-rpmA intergenic region YhbE SW:YHBE_ECOLI (P28636) (321 aa) fasta scores: E(): 0%2C 79.5%25 id in 303 aa%2Cand to Haemophilus influenzae hypothetical protein Hi0878 SW:YHBE_HAEIN (P71360) (306 aa) fasta scores: E(): 0%2C 48.7%25 id in 306 aa gene gene3454 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3510 YPO3511 YPO3511 rpmA rpmA 3921623 3921880 - 50S ribosomal protein L27 Similar to Escherichia coli 50S ribosomal protein L27 RpmA SW:RL27_ECOLI (P02427) (84 aa) fasta scores: E(): 5e-31%2C 94.0%25 id in 84 aa%2C and to Vibrio cholerae ribosomal protein L27 Vc0436 TR:Q9KUS9 (EMBL:AE004131) (86 aa) fasta scores: E(): 1.2e-29%2C 91.6%25 id in 83 aa gene gene3455 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3511 YPO3512 YPO3512 rplU rplU 3921900 3922211 - 50S ribosomal protein L21 Similar to Escherichia coli 50S ribosomal protein L21 RplU SW:RL21_ECOLI (P02422) (103 aa) fasta scores: E(): 0%2C 88.3%25 id in 103 aa%2C and to Vibrio cholerae 50S ribosomal protein L21 RplU or Vc0435 TR:Q9KUT0 (EMBL:AE004131) (103 aa) fasta scores: E(): 0%2C 78.6%25 id in 103 aa gene gene3456 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3512 YPO3513 YPO3513 cel cel 3922471 3923442 + octaprenyl-diphosphate synthase Similar to Escherichia coli octaprenyl-diphosphate synthase IspB or Cel SW:ISPB_ECOLI (P19641) (323 aa) fasta scores: E(): 0%2C 79.4%25 id in 321 aa%2C and to Vibrio cholerae octaprenyl-diphosphate synthase Vc0434 TR:Q9KUT1 (EMBL:AE004131) (348 aa) fasta scores: E(): 0%2C 72.9%25 id in 321 aa gene gene3457 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3513 YPO3514 YPO3514 YPO3514 3923539 3923940 - conserved hypothetical protein Similar to Bacteriophage D108 repressor protein CI SW:RPC1_BPD10 (P07040) (174 aa) fasta scores: E(): 1.4e-06%2C33.6%25 id in 110 aa%2C and to the N-terminal region of several transposases gene gene3458 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3514 YPO3515 YPO3515 YPO3515 3924176 3924370 - putative exported protein no significant database matches gene gene3459 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3515 YPO3516 YPO3516 mdh mdh 3924779 3925717 - malate dehydrogenase Identical to the previously sequenced Yersinia pestis and Y. pseudotuberculosis malate dehydrogenase Mdh TR:AAG21999 (EMBL:AF282310) (312 aa) fasta scores: E(): 0%2C100.0%25 id in 312 aa%2C and similar to Escherichia coli malate dehydrogenase Mdh SW:MDH_ECOLI (P06994) (312 aa) fasta scores: E(): 0%2C 89.7%25 id in 312 aa gene gene3460 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3516 YPO3517 YPO3517 argR argR 3926181 3926651 + arginine repressor Similar to Escherichia coli arginine repressor ArgR or XerA SW:ARGR_ECOLI (P15282) (156 aa) fasta scores: E(): 0%2C 89.7%25 id in 156 aa%2C and to Salmonella typhimurium arginine repressor ArgR SW:ARGR_SALTY (P37170) (156 aa) fasta scores: E(): 0%2C 89.1%25 id in 156 aa gene gene3461 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3517 YPO3518 YPO3518 YPO3518 3927040 3927303 + putative exported protein Similar to Escherichia coli hypothetical 11.2 kDa protein in argR-cafA intergenic region precursor YhcN SW:YHCN_ECOLI (P46477) (87 aa) fasta scores: E(): 4.9e-16%2C54.0%25 id in 87 aa%2C and to Escherichia coli hypothetical 8.8 kDa protein in ndh-mfd intergenic region precursor YcfR SW:YCFR_ECOLI (P75953) (85 aa) fasta scores: E(): 8.4e-06%2C38.4%25 id in 86 aa gene gene3462 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3518 YPO3519 YPO3519 mpl mpl 3927599 3928981 - UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-m e so-diaminopimelate ligase Similar to Escherichia coli UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diamin o pimelate ligase Mpl SW:MPL_ECOLI (P37773) (457 aa) fasta scores: E(): 0%2C 84.2%25 id in 456 aa%2C and to Haemophilus influenzae UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diamin o pimelate ligase Mpl or Hi0121 SW:MPL_HAEIN (P43948) (453 aa) fasta scores: E(): 0%2C 64.9%25 id in 450 aa gene gene3463 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3519 YPO3520 YPO3520 fbp fbp 3929152 3930165 + fructose-1%2C6-bisphosphatase Similar to Escherichia coli fructose-1%2C6-bisphosphatase Fbp or Fdp SW:F16P_ECOLI (P09200) (332 aa) fasta scores: E(): 0%2C 84.1%25 id in 333 aa%2Cand to Vibrio cholerae fructose-1%2C6-bisphosphatase Vc2544 TR:Q9KP35 (EMBL:AE004323) (336 aa) fasta scores: E(): 0%2C73.9%25 id in 333 aa gene gene3464 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3520 YPO3521 YPO3521 ppa ppa 3930365 3930892 + inorganic pyrophosphatase Similar to Escherichia coli inorganic pyrophosphatase Ppa SW:IPYR_ECOLI (P17288) (175 aa) fasta scores: E(): 0%2C 91.3%25 id in 173 aa%2C and to Vibrio cholerae inorganic pyrophosphatase VC2545 TR:Q9KP34 (EMBL:AE004323) (176 aa) fasta scores: E(): 0%2C 83.3%25 id in 174 aa gene gene3465 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3521 YPO3522 YPO3522 YPO3522 3931010 3931366 - conserved hypothetical protein Similar to Escherichia coli hypothetical protein YtfP SW:YTFP_ECOLI (P39323) (113 aa) fasta scores: E(): 2.2e-30%2C 61.3%25 id in 111 aa%2C and to Vibrio cholerae hypothetical protein VC2546 TR:Q9KP33 (EMBL:AE004323) (115 aa) fasta scores: E(): 6.3e-15%2C 39.1%25 id in 110 aa gene gene3466 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3522 YPO3523 YPO3523 YPO3523 3931369 3935286 - putative exported protein Similar to Escherichia coli hypothetical 136.8 kDa protein in msrA-chpB intergenic region YtfN SW:YTFN_ECOLI (P39321) (1259 aa) fasta scores: E(): 0%2C 57.4%25 id in 1309 aa gene gene3467 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3523 YPO3524 YPO3524 YPO3524 3935283 3937019 - putative exported protein Similar to Escherichia coli hypothetical 64.8 kDa protein in msrA-chpB intergenic region precursor YtfM SW:YTFM_ECOLI (P39320) (577 aa) fasta scores: E(): 0%2C 71.2%25 id in 573 aa%2C and to Haemophilus influenzae hypothetical protein Hi0698 precursor SW:YTFM_HAEIN (P44038) (578 aa) fasta scores: E(): 0%2C 43.3%25 id in 577 aa gene gene3468 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3524 YPO3525 YPO3525 msrA msrA 3937294 3937932 + peptide methionine sulfoxide reductase Similar to Escherichia coli peptide methionine sulfoxide reductase MsrA SW:PMSR_ECOLI (P27110) (211 aa) fasta scores: E(): 0%2C 74.3%25 id in 206 aa%2C and to Erwinia chrysanthemi peptide methionine sulfoxide reductase MsrA TR:Q9ZEQ8 (EMBL:AJ012716) (213 aa) fasta scores: E(): 0%2C71.9%25 id in 210 aa gene gene3469 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3525 YPO3526 YPO3526 YPO3526 3938210 3939541 + putative membrane protein Similar to Escherichia coli hypothetical 49.8 kDa protein in cysQ-msrA intergenic region YtfL SW:YTFL_ECOLI (P39319) (447 aa) fasta scores: E(): 0%2C 82.2%25 id in 437 aa%2Cand to Vibrio cholerae putative hemolysin Vca0837 TR:Q9KLA9 (EMBL:AE004411) (437 aa) fasta scores: E(): 0%2C 59.4%25 id in 438 aa gene gene3470 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3526 YPO3527 YPO3527 YPO3527 3939649 3939861 - conserved hypothetical protein Similar to Escherichia coli hypothetical protein YtfK SW:YTFK_ECOLI (P39318) (68 aa) fasta scores: E(): 1.7e-21%2C 77.3%25 id in 66 aa%2C and to Vibrio cholerae hypothetical protein VC2473 TR:Q9KPA0 (EMBL:AE004317) (77 aa) fasta scores: E(): 1.1e-12%2C 46.9%25 id in 64 aa gene gene3471 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3527 YPO3528 YPO3528 YPO3528 3940197 3940760 + putative exported protein Similar to Escherichia coli protein YtfJ precursor ytfJ SW:YTFJ_ECOLI (P39187) (184 aa) fasta scores: E(): 0%2C59.7%25 id in 186 aa%2C and to Vibrio cholerae hypothetical protein Vc2550 TR:Q9KP29 (EMBL:AE004324) (183 aa) fasta scores: E(): 0%2C 52.5%25 id in 183 aa gene gene3472 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3528 YPO3529 YPO3529 amtA amtA 3940763 3941506 - inositol monophosphatase family protein Similar to Escherichia coli CysQ protein or AmtA SW:CYSQ_ECOLI (P22255) (246 aa) fasta scores: E(): 0%2C 77.6%25 id in 246 aa%2C and to Xylella fastidiosa sulfite synthesis pathway protein Xf0187 TR:Q9PGW1 (EMBL:AE003872) (272 aa) fasta scores: E(): 0%2C 46.7%25 id in 244 aa gene gene3473 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3529 YPO3530 YPO3530 cpdB cpdB 3941938 3943908 + 2'%2C3'-cyclic-nucleotide 2'-phosphodiesterase precursor Similar to Escherichia coli 2'%2C3'-cyclic-nucleotide 2'-phosphodiesterase precursor CpdB SW:CN16_ECOLI (P08331) (647 aa) fasta scores: E(): 0%2C 76.0%25 id in 646 aa%2C and to Yersinia enterocolitica 2'%2C3'-cyclic-nucleotide 2'-phosphodiesterase precursor CpdB SW:CN16_YEREN (P53052) (652 aa) fasta scores: E(): 0%2C 91.3%25 id in 652 aa gene gene3474 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3530 YPO3531 YPO3531 YPO3531 3944063 3944728 + conserved hypothetical protein Similar to Escherichia coli hypothetical protein YtfE SW:YTFE_ECOLI (P39313) (220 aa) fasta scores: E(): 0%2C61.5%25 id in 221 aa%2C and to Haemophilus influenzae hypothetical protein HI1677 SW:YTFE_HAEIN (P45312) (223 aa) fasta scores: E(): 0%2C 54.1%25 id in 220 aa gene gene3475 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3531 YPO3532 YPO3532 fklB fklB 3944826 3945446 - FKBP-type peptidyl-prolyl cis-trans isomerase Similar to Escherichia coli FKBP-type 22 kDa peptidyl-prolyl cis-trans isomerase FklB SW:FKBB_ECOLI (P39311) (205 aa) fasta scores: E(): 0%2C 73.2%25 id in 205 aa%2Cand to Vibrio cholerae FKBP-type peptidyl-prolyl cis-trans isomerase Vc2568 TR:Q9KP11 (EMBL:AE004325) (209 aa) fasta scores: E(): 0%2C 61.2%25 id in 206 aa gene gene3476 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3532 YPO3533 YPO3533 YPO3533 3945789 3946529 + conserved hypothetical protein Similar to Escherichia coli hypothetical protein YtfB SW:YTFB_ECOLI (P39310) (212 aa) fasta scores: E(): 5.1e-16%2C 45.9%25 id in 207 aa%2C and to Vibrio cholerae hypothetical protein VC2567 TR:Q9KP12 (EMBL:AE004325) (190 aa) fasta scores: E(): 4.1e-14%2C 32.1%25 id in 187 aa gene gene3477 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3533 YPO3534 YPO3534 YPO3534 3946669 3947124 + putative exported protein no significant database matches gene gene3478 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3534 YPO3535 YPO3535 tnp tnp 3947246 3947704 - transposase for the IS1541 insertion element Similar to Salmonella typhimurium%2C and Salmonella typhi transposase for insertion sequence IS200 TnpA SW:T200_SALTY (Q57334) (152 aa) fasta scores: E(): 0%2C 94.1%25 id in 152 aa. Identical to the Yersinia pseudotuberculosis IS1541-like element transposase Tnp TR:Q9X9F5 (EMBL:AJ238014) (152 aa) fasta scores: E(): 0%2C 100.0%25 id in 152 aa gene gene3479 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3535 YPO3536 YPO3536 rplI rplI 3947900 3948352 - 50S ribosomal protein L9 Similar to Escherichia coli 50S ribosomal protein L9 RplI SW:RL9_ECOLI (P02418) (149 aa) fasta scores: E(): 0%2C89.9%25 id in 149 aa%2C and to Haemophilus influenzae 50S ribosomal protein L9 RplI or Rpl9 or Hi0544 SW:RL9_HAEIN (P44349) (149 aa) fasta scores: E(): 0%2C 70.5%25 id in 149 aa gene gene3480 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3536 YPO3537 YPO3537 rpsR rpsR 3948392 3948619 - 30S ribosomal protein S18 Similar to Escherichia coli 30S ribosomal protein S18 RpsR SW:RS18_ECOLI (P02374) (74 aa) fasta scores: E(): 2.2e-30%2C 97.3%25 id in 74 aa%2C and to Haemophilus influenzae 30S ribosomal protein S18 RpsR or Rps18 or Hi0545 SW:RS18_HAEIN (P44384) (74 aa) fasta scores: E(): 3.4e-29%2C93.2%25 id in 74 aa gene gene3481 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3537 YPO3538 YPO3538 priB priB 3948624 3948944 - primosomal replication protein n Similar to Escherichia coli primosomal replication protein n PriB SW:PRIB_ECOLI (P07013) (103 aa) fasta scores: E(): 0%2C 77.7%25 id in 103 aa%2C and to Haemophilus influenzae primosomal replication protein n PriB SW:PRIB_HAEIN (P44748) (94 aa) fasta scores: E(): 2.7e-21%2C59.1%25 id in 93 aa gene gene3482 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3538 YPO3539 YPO3539 rpsF rpsF 3948950 3949342 - 30S ribosomal protein S6 Similar to Escherichia coli 30S ribosomal protein S6 RpsF SW:RS6_ECOLI (P02358) (135 aa) fasta scores: E(): 0%2C88.5%25 id in 131 aa%2C and to Haemophilus influenzae 30S ribosomal protein S6 RpsF or Rps6 or Hi0547 SW:RS6_HAEIN (P44375) (125 aa) fasta scores: E(): 0%2C 72.3%25 id in 130 aa gene gene3483 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3539 YPO3540 YPO3540 YPO3540 3949356 3949634 - hypothetical protein no significant database hits gene gene3484 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3540 YPO3541 YPO3541 YPO3541 3949709 3950380 - conserved hypothetical protein (pseudogene) Deletion of 26 amino acids at the N-terminal end due to the insertion of IS100 element. Similar to Escherichia coli hypothetical 27.6 kDa protein in aidB-sgaT intergenic region YjfP SW:YJFP_ECOLI (P39298) (249 aa) fasta scores: E(): 0%2C 52.0%25 id in 223 aa pseudogene gene3485 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3541 YPO3542 YPO3542 y1093 y1093 3950467 3951489 + transposase for insertion sequence IS100 Similar to Escherichia coli transposase for insertion sequence element IS21 IstA SW:ISTA_ECOLI (P15025) (390 aa) fasta scores: E(): 3e-27%2C 33.1%25 id in 329 aa. Identical to the previously sequenced Yersinia pestis%2CYersinia pseudotuberculosis%2C and Escherichia coli pesticin plasmid insertion sequence transposase Y1055 TR:P74993 (EMBL:U59875) (340 aa) fasta scores: E(): 0%2C 100.0%25 id in 340 aa gene gene3486 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3542 YPO3543 YPO3543 ypmt1.57c ypmt1.57c 3951486 3952268 + insertion sequence IS100%2C ATP-binding protein Similar to Escherichia coli insertion sequence IS21 putative ATP-binding protein%2C IstB SW:ISTB_ECOLI (P15026) (265 aa) fasta scores: E(): 0%2C 47.4%25 id in 249 aa. Also almost identical to Yersinia pestis and Escherichia coli putative IS100 transposase ypmt1.57c TR:Q9R3L5 (EMBL:AL117211) (260 aa) fasta scores: E(): 0%2C 99.6%25 id in 260 aa. gene gene3487 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3543 YPO3544 YPO3544 YPO3544 3952335 3953225 + conserved hypothetical protein (pseudogene) Deletion of 34 amino acids at the N-terminal end due to the insertion IS100 element. Similar to Escherichia coli hypothetical 37.4 kDa protein in exuR-tdcC intergenic region YqjG SW:YQJG_ECOLI (P42620) (328 aa) fasta scores: E(): 0%2C 78.4%25 id in 268 aa%2C and to Synechocystis sp. hypothetical 36.5 kDa protein Slr0605 TR:P74752 (EMBL:D90917) (319 aa) fasta scores: E(): 0%2C 65.8%25 id in 266 aa pseudogene gene3488 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3544 YPO3545 YPO3545 YPO3545 3953349 3954242 - lysR-family transcriptional regulatory protein Similar to Escherichia coli hypothetical transcriptional regulator YhaJ SW:YHAJ_ECOLI (P42623) (298 aa) fasta scores: E(): 0%2C 88.9%25 id in 298 aa%2C and to Vibrio cholerae transcriptional regulator LysR family VCA0575 TR:Q9KM14 (EMBL:AE004388) (295 aa) fasta scores: E(): 0%2C48.1%25 id in 287 aa gene gene3489 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3545 YPO3546 YPO3546 YPO3546 3954504 3955208 + conserved hypothetical protein Similar to Escherichia coli hypothetical protein YhaK SW:YHAK_ECOLI (P42624) (233 aa) fasta scores: E(): 0%2C68.8%25 id in 234 aa gene gene3490 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3546 YPO3547 YPO3547 YPO3547 3956145 3957044 - putative tetrapyrrole methylase Similar to Escherichia coli hypothetical protein YraL SW:YRAL_ECOLI (P45528) (286 aa) fasta scores: E(): 0%2C85.3%25 id in 286 aa%2C and to Vibrio cholerae hypothetical protein VC0582 TR:Q9KUD9 (EMBL:AE004143) (288 aa) fasta scores: E(): 0%2C 67.2%25 id in 274 aa gene gene3492 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3547 YPO3548 YPO3548 YPO3548 3957107 3959080 + putative exported protein Similar to Escherichia coli hypothetical 72.8 kDa protein in agaI-mtr intergenic region YraM SW:YRAM_ECOLI (P45464) (678 aa) fasta scores: E(): 0%2C 53.9%25 id in 683 aa gene gene3493 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3548 YPO3549 YPO3549 YPO3549 3959164 3959517 + conserved hypothetical protein Similar to Escherichia coli hypothetical protein YraN SW:YRAN_ECOLI (P45465) (131 aa) fasta scores: E(): 2.7e-26%2C 57.4%25 id in 115 aa%2C and to Xylella fastidiosa hypothetical protein XF0554 TR:Q9PFV3 (EMBL:AE003902) (121 aa) fasta scores: E(): 5.9e-20%2C 49.6%25 id in 119 aa gene gene3494 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3549 YPO3550 YPO3550 YPO3550 3959788 3960378 + probable phosphosugar isomerase Similar to Escherichia coli hypothetical 21.1 kDa protein in agaI-mtr intergenic region YraO SW:YRAO_ECOLI (P45466) (196 aa) fasta scores: E(): 0%2C 93.8%25 id in 194 aa%2Cand to Vibrio cholerae putative phosphoheptose isomerase Vc0579 TR:Q9KUE2 (EMBL:AE004143) (196 aa) fasta scores: E(): 0%2C 68.9%25 id in 196 aa gene gene3495 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3550 YPO3551 YPO3551 YPO3551 3960389 3960964 + putative exported protein Similar to Escherichia coli hypothetical 20.0 kDa protein in agai-mtr intergenic region precursor yraP SW:YRAP_ECOLI (P45467) (191 aa) fasta scores: E(): 0%2C 73.3%25 id in 191 aa%2C and to Actinobacillus pleuropneumoniae 21 kDa hemolysin precursor hlY SW:HLY2_ACTPL (P46028) (194 aa) fasta scores: E(): 2.2e-25%2C 49.0%25 id in 155 aa gene gene3496 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3551 YPO3552 YPO3552 mtgA mtgA 3961171 3961896 - monofunctional biosynthetic peptidoglycan transglycosylase Similar to Klebsiella pneumoniae monofunctional biosynthetic peptidoglycan transglycosylase MtgA SW:MTGA_KLEPN (Q48465) (242 aa) fasta scores: E(): 0%2C 71.4%25 id in 224 aa%2C and to Escherichia coli monofunctional biosynthetic peptidoglycan transglycosylase MtgA SW:MTGA_ECOLI (P46022) (242 aa) fasta scores: E(): 0%2C 72.4%25 id in 225 aa gene gene3497 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3552 YPO3553 YPO3553 elb2 elb2 3961893 3962546 - enhancing lycopene biosynthesis protein 2 Similar to Escherichia coli enhancing lycopene biosynthesis protein 2 ElbB or Elb2 SW:ELBB_ECOLI (P26428) (217 aa) fasta scores: E(): 0%2C 63.6%25 id in 217 aa gene gene3498 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3553 YPO3554 YPO3554 YPO3554 3962576 3962770 - hypothetical protein no significant database hits gene gene3499 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3554 YPO3555 YPO3555 arcB arcB 3962788 3965124 - aerobic respiration control sensor/response regulatory protein Similar to Escherichia coli aerobic respiration control sensor protein ArcB SW:ARCB_ECOLI (P22763) (776 aa) fasta scores: E(): 0%2C 75.9%25 id in 781 aa%2C and to Vibrio cholerae sensor histidine kinase FexB or VC2369 TR:Q9KPJ8 (EMBL:AE004307) (785 aa) fasta scores: E(): 0%2C 58.8%25 id in 779 aa gene gene3500 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3555 YPO3556 YPO3556 YPO3556 3965388 3966311 - conserved hypothetical protein Similar to Escherichia coli hypothetical protein YhcC SW:YHCC_ECOLI (P45476) (309 aa) fasta scores: E(): 0%2C78.7%25 id in 301 aa%2C and to Vibrio cholerae hypothetical protein VC2371 TR:Q9KPJ6 (EMBL:AE004307) (316 aa) fasta scores: E(): 0%2C 70.9%25 id in 306 aa gene gene3501 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3556 YPO3557 YPO3557 aspB aspB 3966984 3971600 + glutamate synthase [NADPH] large chain precursor Similar to Escherichia coli glutamate synthase [NADPH] large chain precursor GltB or AspB SW:GLTB_ECOLI (P09831) (1517 aa) fasta scores: E(): 0%2C 87.4%25 id in 1497 aa%2C and to Vibrio cholerae glutamate synthase%2C large subunit Vc2376 TR:Q9KPJ1 (EMBL:AE004308) (1487 aa) fasta scores: E(): 0%2C 73.7%25 id in 1488 aa gene gene3502 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3557 YPO3558 YPO3558 aspB aspB 3971610 3973028 + glutamate synthase [NADPH] small chain Similar to Escherichia coli glutamate synthase [NADPH] small chain GltD or AspB SW:GLTD_ECOLI (P09832) (471 aa) fasta scores: E(): 0%2C 84.5%25 id in 471 aa%2C and to Vibrio cholerae glutamate synthase%2C small subunit Vc2377 TR:Q9KPJ0 (EMBL:AE004308) (471 aa) fasta scores: E(): 0%2C76.1%25 id in 472 aa. Similar to YPO0342 (69.8%25 identity in 470 aa overlap) gene gene3503 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3558 YPO3559 YPO3559 YPO3559 3973469 3973954 + putative exported protein Weak similarity to the N-terminal half of Escherichia coli iron FecB SW:FECB_ECOLI (P15028) (300 aa) fasta scores: E(): 7.6%2C 22.3%25 id in 157 aa gene gene3504 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3559 YPO3560 YPO3560 sspB sspB 3974107 3974622 - putative stringent starvation protein B Similar to Escherichia coli stringent starvation protein B SspB SW:SSPB_ECOLI (P25663) (165 aa) fasta scores: E(): 0%2C 72.5%25 id in 171 aa%2C and to Vibrio cholerae stringent starvation protein B Vc0577 TR:Q9KUE4 (EMBL:AE004143) (158 aa) fasta scores: E(): 8.2e-31%2C 57.9%25 id in 171 aa gene gene3505 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3560 YPO3561 YPO3561 pog pog 3974628 3975269 - putative stringent starvation protein A Similar to Escherichia coli stringent starvation protein A SspA SW:SSPA_ECOLI (P05838) (211 aa) fasta scores: E(): 0%2C 83.7%25 id in 208 aa%2C and to Providencia stuartii SspA TR:AAG01334 (EMBL:AF288218) (213 aa) fasta scores: E(): 0%2C 80.7%25 id in 212 aa. Inactivation of sspA blocks sspB expression. gene gene3506 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3561 YPO3562 YPO3562 rpsI rpsI 3975643 3976035 - 30S ribosomal protein S9 Similar to Escherichia coli 30S ribosomal protein S9 RpsI SW:RS9_ECOLI (P02363) (129 aa) fasta scores: E(): 0%2C92.2%25 id in 129 aa%2C and to Vibrio cholerae ribosomal protein S9 Vc0571 TR:Q9KUF0 (EMBL:AE004142) (130 aa) fasta scores: E(): 0%2C 86.9%25 id in 130 aa gene gene3507 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3562 YPO3563 YPO3563 rplM rplM 3976050 3976478 - 50S ribosomal protein L13 Similar to Escherichia coli 50S ribosomal protein L13 RplM SW:RL13_ECOLI (P02410) (142 aa) fasta scores: E(): 0%2C 95.1%25 id in 142 aa%2C and to Haemophilus somnus 50S ribosomal protein L13 RplM TR:AAB20820 (EMBL:S75161) (142 aa) fasta scores: E(): 0%2C 90.1%25 id in 142 aa gene gene3508 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3563 YPO3564 YPO3564 YPO3564 3976792 3977919 - conserved hypothetical protein Similar to Escherichia coli hypothetical protein YhcM SW:YHCM_ECOLI (P46442) (375 aa) fasta scores: E(): 0%2C65.6%25 id in 375 aa%2C and to Vibrio cholerae hypothetical protein VC0568 TR:Q9KUF3 (EMBL:AE004142) (367 aa) fasta scores: E(): 0%2C 54.2%25 id in 371 aa gene gene3509 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3564 YPO3565 YPO3565 YPO3565 3978143 3978547 + putative membrane protein Similar to Escherichia coli hypothetical 15.2 kDa protein in rplM-hhoA intergenic region YhcB SW:YHCB_ECOLI (P39436) (134 aa) fasta scores: E(): 0%2C 80.3%25 id in 127 aa%2Cand to Vibrio cholerae hypothetical protein Vc0567 TR:Q9KUF4 (EMBL:AE004142) (145 aa) fasta scores: E(): 2.7e-20%2C 45.8%25 id in 131 aa gene gene3510 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3565 YPO3566 YPO3566 degQ degQ 3978818 3980191 + protease Similar to Escherichia coli protease precursor DegQ or HhoA SW:DEGQ_ECOLI (P39099) (455 aa) fasta scores: E(): 0%2C 72.1%25 id in 458 aa%2C and to Vibrio cholerae protease VC0566 TR:Q9KUF5 (EMBL:AE004142) (456 aa) fasta scores: E(): 0%2C 62.6%25 id in 457 aa. Similar to YPO3382 (58.0%25 identity in 483 aa overlap) gene gene3511 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3566 YPO3567 YPO3567 tnp tnp 3980308 3980766 - transposase for the IS1541 insertion element Similar to Salmonella typhimurium%2C and Salmonella typhi transposase for insertion sequence IS200 TnpA SW:T200_SALTY (Q57334) (152 aa) fasta scores: E(): 0%2C 94.1%25 id in 152 aa. Identical to the Yersinia pseudotuberculosis IS1541-like element transposase Tnp TR:Q9X9F5 (EMBL:AJ238014) (152 aa) fasta scores: E(): 0%2C 100.0%25 id in 152 aa gene gene3512 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3567 YPO3568 YPO3568 degS degS 3980992 3982080 + protease Similar to Escherichia coli protease precursor DegS or HhoB or HtrH SW:DEGS_ECOLI (P31137) (355 aa) fasta scores: E(): 0%2C 71.2%25 id in 351 aa%2C and to Vibrio cholerae protease DegS VC0565 TR:Q9KUF6 (EMBL:AE004142) (352 aa) fasta scores: E(): 0%2C 52.2%25 id in 345 aa gene gene3513 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3568 YPO3569 YPO3569 murA murA 3982261 3983523 - UDP-N-acetylglucosamine 1-carboxyvinyltransferase Similar to Enterobacter cloacae UDP-N-acetylglucosamine 1-carboxyvinyltransferase MurA or MurZ SW:MURA_ENTCL (P33038) (419 aa) fasta scores: E(): 0%2C91.7%25 id in 420 aa%2C and to Escherichia coli UDP-N-acetylglucosamine 1-carboxyvinyltransferase MurA or MurZ SW:MURA_ECOLI (P28909) (419 aa) fasta scores: E(): 0%2C88.8%25 id in 420 aa gene gene3514 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3569 YPO3570 YPO3570 YPO3570 3983677 3983940 - BolA-like protein Similar to Escherichia coli hypothetical protein YrbA SW:YRBA_ECOLI (P43781) (84 aa) fasta scores: E(): 3.8e-28%2C 81.0%25 id in 84 aa%2C and to Shigella flexneri YrbA TR:Q9RHA0 (EMBL:AF053073) (89 aa) fasta scores: E(): 4e-28%2C81.0%25 id in 84 aa gene gene3515 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3570 YPO3571 YPO3571 YPO3571 3984078 3984380 - putative anti-sigma B factor antagonist Similar to Listeria monocytogenes anti-sigma b factor antagonist RsbV SW:RSBV_LISMO (O85016) (114 aa) fasta scores: E(): 0.013%2C 31.9%25 id in 91 aa%2C and to Escherichia coli hypothetical protein YrbB SW:YRBB_ECOLI (P45389) (129 aa) fasta scores: E(): 2.6e-13%2C 41.7%25 id in 96 aa gene gene3516 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3571 YPO3572 YPO3572 yrbC yrbC 3984416 3985039 - putative exported protein Similar to Escherichia coli hypothetical 24.0 kDa protein in murA-rpoN intergenic region precursor YrbC SW:YRBC_ECOLI (P45390) (211 aa) fasta scores: E(): 0%2C 77.5%25 id in 209 aa%2C and to Shigella flexneri YrbC TR:AAF21249 (EMBL:AF053073) (211 aa) fasta scores: E(): 0%2C 77.5%25 id in 209 aa gene gene3517 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3572 YPO3573 YPO3573 yrbD yrbD 3985052 3985609 - putative membrane protein Similar to Escherichia coli hypothetical 19.6 kDa protein in murA-rpoN intergenic region precursor YrbD SW:YRBD_ECOLI (P45391) (183 aa) fasta scores: E(): 0%2C 69.1%25 id in 181 aa%2C and to Shigella flexneri VpsC TR:Q9RHA1 (EMBL:AF053073) (183 aa) fasta scores: E(): 0%2C 68.5%25 id in 181 aa gene gene3518 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3573 YPO3574 YPO3574 yrbE yrbE 3985614 3986396 - putative membrane protein Similar to Escherichia coli hypothetical 27.9 kDa protein in murA-rpoN intergenic region YrbE SW:YRBE_ECOLI (P45392) (260 aa) fasta scores: E(): 0%2C 82.7%25 id in 260 aa%2Cand to Vibrio cholerae hypothetical protein Vc2519 TR:Q9KP57 (EMBL:AE004321) (258 aa) fasta scores: E(): 0%2C78.0%25 id in 255 aa gene gene3519 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3574 YPO3575 YPO3575 yrbF yrbF 3986614 3987432 - putative ABC transporter ATP-binding protein Similar to Escherichia coli hypothetical ABC transporter ATP-binding protein in murA-rpoN intergenic region YrbF SW:YRBF_ECOLI (P45393) (269 aa) fasta scores: E(): 0%2C 78.2%25 id in 266 aa%2C and to Vibrio cholerae ABC transporter%2C ATP-binding protein Vc2520 TR:Q9KP56 (EMBL:AE004321) (267 aa) fasta scores: E(): 0%2C 72.2%25 id in 263 aa gene gene3520 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3575 YPO3576 YPO3576 yrbG yrbG 3987697 3988671 + putative sodium/calcium exchanger protein Similar to Escherichia coli hypothetical 34.7 kDa protein in murA-rpoN intergenic region YrbG SW:YRBG_ECOLI (P45394) (325 aa) fasta scores: E(): 0%2C 60.6%25 id in 322 aa%2Cand to Vibrio cholerae hypothetical protein Vc2522 TR:Q9KP54 (EMBL:AE004322) (332 aa) fasta scores: E(): 0%2C55.1%25 id in 314 aa gene gene3521 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3576 YPO3577 YPO3577 YPO3577 3988782 3989768 + conserved hypothetical protein Similar to Escherichia coli hypothetical protein YrbH SW:YRBH_ECOLI (P45395) (328 aa) fasta scores: E(): 0%2C77.4%25 id in 328 aa%2C and to Vibrio cholerae hypothetical protein VC2523 TR:Q9KP53 (EMBL:AE004322) (326 aa) fasta scores: E(): 0%2C 65.5%25 id in 319 aa gene gene3522 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3577 YPO3578 YPO3578 YPO3578 3990017 3990580 + conserved hypothetical protein Similar to Escherichia coli hypothetical protein YrbI SW:YRBI_ECOLI (P45396) (188 aa) fasta scores: E(): 0%2C77.0%25 id in 183 aa%2C and to Vibrio cholerae hypothetical protein VC2524 TR:Q9KP52 (EMBL:AE004322) (185 aa) fasta scores: E(): 0%2C 59.4%25 id in 187 aa gene gene3523 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3578 YPO3579 YPO3579 yrbK yrbK 3990577 3991140 + putative exported protein Similar to Escherichia coli hypothetical 21.7 kDa protein in murA-rpoN intergenic region YrbK SW:YRBK_ECOLI (P45397) (191 aa) fasta scores: E(): 0%2C 55.9%25 id in 186 aa gene gene3524 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3579 YPO3580 YPO3580 YPO3580 3991124 3991669 + conserved hypothetical protein Similar to Escherichia coli protein YhbN precursor SW:YHBN_ECOLI (P38685) (185 aa) fasta scores: E(): 0%2C 67.2%25 id in 183 aa%2C and to Pasteurella multocida hypothetical protein PM0172 TR:AAK02256 (EMBL:AE006051) (170 aa) fasta scores: E(): 6.9e-30%2C 53.8%25 id in 171 aa gene gene3525 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3580 YPO3581 YPO3581 yhbG yhbG 3991676 3992401 + probable ABC transporter ATP-binding protein Similar to Escherichia coli probable ABC transporter ATP-binding protein in murA-rpoN intergenic region YhbG SW:YHBG_ECOLI (P31220) (240 aa) fasta scores: E(): 0%2C 87.5%25 id in 240 aa%2C and to Haemophilus influenzae probable ABC transporter ATP-binding protein Hi1148 SW:YHBG_HAEIN (P45073) (241 aa) fasta scores: E(): 0%2C 78.8%25 id in 241 aa gene gene3526 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3581 YPO3582 YPO3582 glnF glnF 3992463 3993896 + RNA polymerase sigma-54 factor Similar to Escherichia coli RNA polymerase sigma-54 factor RpoN or GlnF or NtrA SW:RP54_ECOLI (P24255) (477 aa) fasta scores: E(): 0%2C 82.6%25 id in 477 aa%2C and to Klebsiella pneumoniae RNA polymerase sigma-54 factor RpoN or NtrA SW:RP54_KLEPN (P06223) (477 aa) fasta scores: E(): 0%2C 82.4%25 id in 477 aa gene gene3527 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3582 YPO3583 YPO3583 yhbH yhbH 3993920 3994207 + probable sigma (54) modulation protein (pseudogene) Similar to Salmonella typhimurium probable sigma (54) modulation protein YhbH SW:RP5M_SALTY (P26983) (95 aa) fasta scores: E(): 1.5e-29%2C 82.1%25 id in 95 aa%2C and to Escherichia coli probable sigma (54) modulation protein YhbH SW:RP5M_ECOLI (P31221) (95 aa) fasta scores: E(): 9.6e-29%2C 81.1%25 id in 95 aa. There is a stop codon at position 36. The sequence has been checked and is believed to be correct pseudogene gene3528 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3583 YPO3585 YPO3585 ptsN ptsN 3994325 3994807 + nitrogen regulatory IIA protein Similar to Escherichia coli nitrogen regulatory IIA protein PtsN or RpoP SW:PTSN_ECOLI (P31222) (163 aa) fasta scores: E(): 0%2C 86.2%25 id in 152 aa%2C and to Klebsiella pneumoniae nitrogen regulatory IIA protein PtsN SW:PTSN_KLEPN (P17162) (162 aa) fasta scores: E(): 0%2C 84.4%25 id in 154 aa gene gene3529 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3585 YPO3586 YPO3586 YPO3586 3995113 3995967 + conserved hypothetical protein Similar to Escherichia coli hypothetical protein YhbJ SW:YHBJ_ECOLI (P33995) (284 aa) fasta scores: E(): 0%2C94.3%25 id in 283 aa%2C and to Klebsiella pneumoniae hypothetical protein YhbJ SW:YHBJ_KLEPN (P17163) (284 aa) fasta scores: E(): 0%2C 94.3%25 id in 283 aa gene gene3530 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3586 YPO3587 YPO3587 npr npr 3995964 3996236 + putative phosphocarrier protein Similar to Escherichia coli phosphocarrier protein Npr SW:PTSO_ECOLI (P33996) (90 aa) fasta scores: E(): 1.2e-29%2C 87.8%25 id in 90 aa%2C and to Klebsiella pneumoniae phosphocarrier protein Npr SW:PTSO_KLEPN (P51185) (90 aa) fasta scores: E(): 1.1e-28%2C 82.2%25 id in 90 aa gene gene3531 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3587 YPO3588 YPO3588 pyrB pyrB 3996574 3997509 + aspartate carbamoyltransferase catalytic subunit Similar to Escherichia coli aspartate carbamoyltransferase catalytic chain PyrB SW:PYRB_ECOLI (P00479) (310 aa) fasta scores: E(): 0%2C 84.8%25 id in 310 aa%2Cand to Erwinia herbicola aspartate transcarbamylase catalytic subunit PyrB TR:Q9RMS8 (EMBL:AF190426) (311 aa) fasta scores: E(): 0%2C 85.9%25 id in 311 aa gene gene3532 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3588 YPO3589 YPO3589 pyrI pyrI 3997521 3997985 + aspartate carbamoyltransferase regulatory chain Similar to Escherichia coli aspartate carbamoyltransferase regulatory chain PyrI SW:PYRI_ECOLI (P00478) (152 aa) fasta scores: E(): 0%2C 78.7%25 id in 150 aa%2Cand to Serratia marcescens aspartate carbamoyltransferase regulatory chain PyrI SW:PYRI_SERMA (P19936) (153 aa) fasta scores: E(): 0%2C 83.0%25 id in 153 aa gene gene3533 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3589 YPO3590 YPO3590 YPO3590 3998123 3998509 + conserved hypothetical protein Similar to Salmonella typhimurium YjgF protein TR:Q9X445 (EMBL:AF095578) (128 aa) fasta scores: E(): 0%2C85.9%25 id in 128 aa%2C and to Escherichia coli hypothetical protein YjgF SW:YJGF_ECOLI (P39330) (127 aa) fasta scores: E(): 0%2C 84.9%25 id in 126 aa. Similar to YPO1669 (55.4%25 identity in 121 aa overlap) and to YPO0627 (48.4%25 identity in 126 aa overlap) gene gene3534 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3590 YPO3591 YPO3591 y1093 y1093 3998850 3999872 + transposase for insertion sequence IS100 Similar to Escherichia coli transposase for insertion sequence element IS21 IstA SW:ISTA_ECOLI (P15025) (390 aa) fasta scores: E(): 3e-27%2C 33.1%25 id in 329 aa. Identical to the previously sequenced Yersinia pestis%2CYersinia pseudotuberculosis%2C and Escherichia coli pesticin plasmid insertion sequence transposase Y1055 TR:P74993 (EMBL:U59875) (340 aa) fasta scores: E(): 0%2C 100.0%25 id in 340 aa gene gene3535 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3591 YPO3592 YPO3592 ypmt1.57c ypmt1.57c 3999869 4000651 + insertion sequence IS100%2C ATP-binding protein Similar to Escherichia coli insertion sequence IS21 putative ATP-binding protein%2C IstB SW:ISTB_ECOLI (P15026) (265 aa) fasta scores: E(): 0%2C 47.4%25 id in 249 aa. Also almost identical to Yersinia pestis and Escherichia coli putative IS100 transposase ypmt1.57c TR:Q9R3L5 (EMBL:AL117211) (260 aa) fasta scores: E(): 0%2C 99.6%25 id in 260 aa. gene gene3536 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3592 YPO3592A YPO3592A YPO3592A 4000721 4000924 - insertion element IS1661 protein (gene fragment) Gene fragment that is similar to Escherichia coli insertion element IS1397 OrfA hypothetical 20.1 kDa protein SW:YI9A_ECOLI (Q47309) (173 aa) fasta scores: E(): 2.3e-20%2C39.6%25 id in 169 aa%3B~was marked partial gene gene3537 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3592A YPO3593 YPO3593 YPO3593 4000981 4001718 + conserved hypothetical protein (pseudogene) The 5'-region of this CDS has been deleted by either the original IS1661 insertion or by the subsequent insertion of a IS100 element. Similar to Vibrio cholerae hypothetical protein Vca0110 TR:Q9KN55 (EMBL:AE004353) (589 aa) fasta scores: E(): 0%2C 55.5%25 id in 245 aa and to Escherichia coli O157:H7 Z0260 hypothetical protein TR:AAG54529 (EMBL:AE005198) (616 aa) fasta scores: E(): 0%2C53.9%25 id in 245 aa pseudogene gene3538 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3593 YPO3594 YPO3594 YPO3594 4001721 4002770 + conserved hypothetical protein Similar to Vibrio cholerae hypothetical protein VCA0111 TR:Q9KN54 (EMBL:AE004353) (338 aa) fasta scores: E(): 3.1e-32%2C 40.6%25 id in 340 aa%2C and to Pseudomonas aeruginosa hypothetical protein PA1661 TR:AAG05050 (EMBL:AE004594) (335 aa) fasta scores: E(): 5.7e-21%2C 34.5%25 id in 345 aa gene gene3539 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3594 YPO3595 YPO3595 YPO3595 4002896 4004212 + conserved hypothetical protein Similar to Vibrio cholerae hypothetical protein VCA0112 TR:Q9KN53 (EMBL:AE004353) (495 aa) fasta scores: E(): 3.8e-28%2C 31.3%25 id in 486 aa gene gene3540 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3595 YPO3596 YPO3596 YPO3596 4004212 4004757 + putative lipoprotein Similar to Vibrio cholerae hypothetical protein Vca0113 TR:Q9KN52 (EMBL:AE004353) (158 aa) fasta scores: E(): 3e-16%2C 38.6%25 id in 132 aa gene gene3541 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3596 YPO3597 YPO3597 YPO3597 4004760 4006106 + conserved hypothetical protein Similar to Vibrio cholerae hypothetical protein VCA0114 TR:Q9KN51 (EMBL:AE004353) (444 aa) fasta scores: E(): 0%2C 49.0%25 id in 447 aa%2C and to Pseudomonas aeruginosa hypothetical protein PA0079 TR:AAG03469 (EMBL:AE004447) (444 aa) fasta scores: E(): 0%2C 40.8%25 id in 448 aa gene gene3542 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3597 YPO3598 YPO3598 YPO3598 4006106 4006873 + putative membrane protein Similar to Vibrio cholerae hypothetical protein Vca0115 TR:Q9KN50 (EMBL:AE004353) (257 aa) fasta scores: E(): 0%2C 38.7%25 id in 243 aa%2C and to Pseudomonas aeruginosa hypothetical protein Pa0078 TR:AAG03468 (EMBL:AE004447) (449 aa) fasta scores: E(): 1.7e-22%2C 32.3%25 id in 229 aa gene gene3543 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3598 YPO3599 YPO3599 clpB2 clpB2 4006884 4009487 + Clp ATPase Similar to Escherichia coli ClpB protein%2C which is thought to form part of a multi-chaperone system supressing protein aggregation%2C SW:CLPB_ECOLI (P03815) (857 aa) fasta scores: E(): 0%2C 40.4%25 id in 727 aa and Yersinia enterocolitica Clp protease-associated protein ClpB TR:AAG00524 (EMBL:AF285784) (890 aa) fasta scores: E(): 0%2C42.4%25 id in 863 aa. Also significantly similar to the products of the Y. pestis CDS: YPO0506%2C YPO0971%2C YPO1471%2CYPO2946 and YPO3275 gene gene3544 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3599 YPO3600 YPO3600 YPO3600 4009484 4010281 + hypothetical protein no significant database hits gene gene3545 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3600 YPO3601 YPO3601 YPO3601 4010278 4010964 + conserved hypothetical protein Similar to Vibrio cholerae hypothetical protein VCA0118 TR:Q9KN47 (EMBL:AE004353) (227 aa) fasta scores: E(): 5.4e-11%2C 31.6%25 id in 209 aa gene gene3546 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3601 YPO3602 YPO3602 YPO3602 4010961 4012358 + conserved hypothetical protein Similar to Vibrio cholerae hypothetical protein VCA0119 TR:Q9KN46 (EMBL:AE004353) (469 aa) fasta scores: E(): 0%2C 36.4%25 id in 451 aa gene gene3547 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3602 YPO3603 YPO3603 YPO3603 4012390 4015923 + putative exported protein Similar to Vibrio cholerae IcmF-related protein vca0120 TR:Q9KN45 (EMBL:AE004353) (1181 aa) fasta scores: E(): 0%2C 37.3%25 id in 1183 aa gene gene3548 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3603 YPO3604 YPO3604 YPO3604 4016048 4016830 + hypothetical protein no significant database hits gene gene3549 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3604 YPO3605 YPO3605 YPO3605 4016827 4017360 + conserved hypothetical protein Similar to Arabidopsis thaliana F15P11.1 protein TR:Q9S9U2 (EMBL:AF160760) (187 aa) fasta scores: E(): 0.024%2C 31.5%25 id in 143 aa gene gene3550 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3605 YPO3606 YPO3606 YPO3606 4017382 4019784 + putative Rhs accessory genetic element Similar to Escherichia coli VgrG protein TR:O52672 (EMBL:AF044503) (713 aa) fasta scores: E(): 0%2C 49.9%25 id in 579 aa%2C and to Escherichia coli VgrE protein TR:O52660 (EMBL:AF044499) (702 aa) fasta scores: E(): 0%2C 49.3%25 id in 576 aa. Similar to YPO3613 (78.0%25 identity in 803 aa overlap) and to YPO0764 (77.2%25 identity in 615 aa overlap) gene gene3551 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3606 YPO3607 YPO3607 YPO3607 4019790 4020248 + conserved hypothetical protein Similar to Pseudomonas aeruginosa hypothetical protein PA0094 TR:AAG03484 (EMBL:AE004448) (144 aa) fasta scores: E(): 8.9e-06%2C 24.8%25 id in 141 aa gene gene3552 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3607 YPO3608 YPO3608 YPO3608 4020241 4023105 + putative exported protein Similar to Escherichia coli CorE protein TR:O52666 (EMBL:AF044501) (1420 aa) fasta scores: E(): 8.3e-32%2C 27.7%25 id in 824 aa%2C and to Escherichia coli RhsD protein precursor SW:RHSD_ECOLI (P16919) (1426 aa) fasta scores: E(): 1.4e-28%2C 27.3%25 id in 842 aa gene gene3553 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3608 YPO3609 YPO3609 YPO3609 4023133 4024503 + conserved hypothetical protein Similar to Escherichia coli hypothetical CorE protein RhsD TR:AAA24544 (EMBL:L19084) (1426 aa) fasta scores: E(): 4.6e-14%2C 28.3%25 id in 473 aa%2C and to Escherichia coli RhsE protein SW:RHSE_ECOLI (P24211) (682 aa) fasta scores: E(): 1.6e-14%2C 26.8%25 id in 522 aa gene gene3554 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3609 YPO3610 YPO3610 YPO3610 4024505 4024990 + conserved hypothetical protein Similar to Bacillus subtilis YokK protein TR:O31996 (EMBL:Z99115) (192 aa) fasta scores: E(): 0.043%2C 26.6%25 id in 154 aa%2C and to Bacteriophage SPBc2 hypothetical protein YokK TR:O64025 (EMBL:AF020713) (192 aa) fasta scores: E(): 0.043%2C 26.6%25 id in 154 aa gene gene3555 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3610 YPO3611 YPO3611 YPO3611 4025040 4025231 - hypothetical protein no significant database hits gene gene3556 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3611 YPO3612 YPO3612 YPO3612 4025613 4026020 - putative transcriptional regulatory protein Similar to Vibrio cholerae cryptic phage Ctxphi transcriptional repressor RstR (RstR1 or VC1455) and (RstR2 or VC1464) TR:O34419 (EMBL:U83796) (112 aa) fasta scores: E(): 6.8e-08%2C 33.6%25 id in 107 aa%2C and to Bacillus subtilis putative PbsX repressor Xre SW:XRE_BACSU (P23789) (113 aa) fasta scores: E(): 3.1e-05%2C 30.2%25 id in 106 aa gene gene3557 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3612 YPO3613 YPO3613 YPO3613 4026381 4028579 + putative Rhs accessory genetic element Similar to Escherichia coli VgrE protein TR:O52660 (EMBL:AF044499) (702 aa) fasta scores: E(): 0%2C 46.7%25 id in 599 aa%2C and to Escherichia coli VgrG protein TR:O52672 (EMBL:AF044503) (713 aa) fasta scores: E(): 0%2C 51.2%25 id in 531 aa. Similar to YPO3606 (78.0%25 identity in 803 aa overlap) and to YPO0764 (76.2%25 identity in 621 aa overlap) gene gene3558 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3613 YPO3614 YPO3614 YPO3614 4028582 4029004 + conserved hypothetical protein Similar to Pseudomonas aeruginosa hypothetical protein PA0094 TR:AAG03484 (EMBL:AE004448) (144 aa) fasta scores: E(): 7e-07%2C 26.5%25 id in 136 aa gene gene3559 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3614 YPO3615 YPO3615 YPO3615 4029049 4033587 + putative membrane protein Similar to Escherichia coli RhsC protein precursor SW:RHSC_ECOLI (P16918) (1397 aa) fasta scores: E(): 6.5e-20%2C 27.2%25 id in 1018 aa%2C and to Streptomyces coelicolor putative Rhs protein scd31.24 TR:Q9L0E3 (EMBL:AL161803) (927 aa) fasta scores: E(): 5.2e-31%2C 31.9%25 id in 889 aa gene gene3560 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3615 YPO3616 YPO3616 YPO3616 4033596 4034390 + conserved hypothetical protein Similar to Ureaplasma parvum hypothetical protein UU139 TR:Q9PR05 (EMBL:AE002114) (236 aa) fasta scores: E(): 1.1%2C 21.9%25 id in 192 aa gene gene3561 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3616 YPO3617 YPO3617 YPO3617 4034737 4035636 - hypothetical protein no significant database hits gene gene3562 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3617 YPO3618 YPO3618 YPO3618 4035633 4036763 - putative oxidoreductase Similar to Thermotoga maritima conserved hypothetical protein Tm0312 TR:Q9WYE8 (EMBL:AE001713) (328 aa) fasta scores: E(): 2.7e-11%2C 24.2%25 id in 240 aa%2C and to Bacillus subtilis hypothetical 37.8 kDa protein in csbX-nadA intergenic region YrbE SW:YRBE_BACSU (O05389) (341 aa) fasta scores: E(): 2.8e-11%2C 25.9%25 id in 332 aa gene gene3563 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3618 YPO3619 YPO3619 YPO3619 4036958 4037899 + putative araC-family transcriptional regulatory protein Similar to Pediococcus pentosaceus raffinose operon transcriptional regulatory protein RafR SW:RAFR_PEDPE (P43465) (277 aa) fasta scores: E(): 1.3e-12%2C 25.6%25 id in 270 aa gene gene3564 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3619 YPO3620 YPO3620 YPO3620 4038061 4038564 - putative carbohydrate transport protein Similar to Haemophilus influenzae high affinity ribose transport protein RbsD or Hi0501 SW:RBSD_HAEIN (P44734) (139 aa) fasta scores: E(): 1.3e-12%2C 34.0%25 id in 141 aa%2C and to Escherichia coli high affinity ribose transport protein RbsD SW:RBSD_ECOLI (P04982) (151 aa) fasta scores: E(): 9.9e-12%2C 32.4%25 id in 136 aa gene gene3565 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3620 YPO3621 YPO3621 YPO3621 4038570 4039502 - probable carbohydrate kinase Similar to Escherichia coli ribokinase RbsK SW:RBSK_ECOLI (P05054) (309 aa) fasta scores: E(): 1.6e-32%2C35.9%25 id in 301 aa%2C and to Pseudomonas aeruginosa ribokinase Rbsk or Pa1950 TR:AAG05338 (EMBL:AE004621) (308 aa) fasta scores: E(): 0%2C 39.3%25 id in 298 aa gene gene3566 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3621 YPO3622 YPO3622 YPO3622 4039656 4040357 - putative deoxyribose-phosphate aldolase Similar to Bacillus subtilis deoxyribose-phosphate aldolase DeoC or Dra SW:DEOC_BACSU (P39121) (211 aa) fasta scores: E(): 1.9e-14%2C 32.2%25 id in 202 aa%2C and to Methanobacterium thermoautotrophicum probable deoxyribose-phosphate aldolase DeoC or Mth818 SW:DEOC_METTH (O26909) (224 aa) fasta scores: E(): 3.9e-18%2C 33.0%25 id in 227 aa gene gene3567 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3622 YPO3623 YPO3623 ssuE ssuE 4040828 4041409 + putative NAD(P)H-dependent FMN reductase Similar to Escherichia coli NAD(P)H-dependent FMN reductase SsuE SW:SSUE_ECOLI (P80644) (191 aa) fasta scores: E(): 0%2C 61.1%25 id in 175 aa%2C and to Pseudomonas putida NADH-dependent FMN reductase SsuE SW:SSUE_PSEPU (O85762) (200 aa) fasta scores: E(): 0%2C 55.9%25 id in 195 aa gene gene3568 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3623 YPO3624 YPO3624 ssuA ssuA 4041424 4042545 + putative aliphatic sulfonates binding protein Similar to Escherichia coli putative aliphatic sulfonates binding protein precursor SsuA SW:SSUA_ECOLI (P75853) (319 aa) fasta scores: E(): 0%2C 73.1%25 id in 316 aa gene gene3569 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3624 YPO3625 YPO3625 ssuD ssuD 4042564 4043712 + alkanesulfonate monooxygenase Similar to Escherichia coli alkanesulfonate monooxygenase SsuD SW:SSUD_ECOLI (P80645) (380 aa) fasta scores: E(): 0%2C 78.7%25 id in 381 aa%2C and to Buttiauxella spPNBS. sulfonate monooxygenase SsuD TR:Q9KHR3 (EMBL:AF250869) (382 aa) fasta scores: E(): 0%2C 81.9%25 id in 382 aa gene gene3570 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3625 YPO3626 YPO3626 ssuC ssuC 4043721 4044518 + putative aliphatic sulfonates transport permease protein Similar to Escherichia coli putative aliphatic sulfonates transport permease protein SsuC SW:SSUC_ECOLI (P75851) (263 aa) fasta scores: E(): 0%2C 79.9%25 id in 259 aa%2Cand to Pseudomonas aeruginosa probable permease of ABC transporter Pa3443 TR:AAG06831 (EMBL:AE004765) (262 aa) fasta scores: E(): 0%2C 81.0%25 id in 263 aa gene gene3571 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3626 YPO3627 YPO3627 ssuB ssuB 4044515 4045330 + putative aliphatic sulfonates transport ATP-binding protein Similar to Escherichia coli putative aliphatic sulfonates transport ATP-binding protein SsuB SW:SSUB_ECOLI (P38053) (255 aa) fasta scores: E(): 0%2C 72.3%25 id in 235 aa%2Cand to Pseudomonas aeruginosa probable ATP-binding component of ABC transporter pa3442 TR:AAG06830 (EMBL:AE004765) (274 aa) fasta scores: E(): 0%2C 73.0%25 id in 241 aa gene gene3572 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3627 YPO3628 YPO3628 YPO3628 4045949 4046152 - putative DNA-damage-inducible protein Similar to Escherichia coli DNA-damage-inducible protein J DinJ SW:DINJ_ECOLI (Q47150) (86 aa) fasta scores: E(): 1.2e-05%2C 36.7%25 id in 60 aa%2C and to the previously sequenced Yersinia pestis Orf11 TR:Q9RPP0 (EMBL:AF152923) (86 aa) fasta scores: E(): 0.003%2C 31.7%25 id in 60 aa gene gene3573 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3628 YPO3629 YPO3629 yjcD yjcD 4046606 4047961 + putative xanthine/uracil permease Similar to Escherichia coli hypothetical 45.7 kDa protein in soxR-acs intergenic region YjcD SW:YJCD_ECOLI (P32702) (449 aa) fasta scores: E(): 0%2C 85.0%25 id in 448 aa%2Cand to Shewanella massilia hypothetical membrane protein TR:O87945 (EMBL:AJ006085) (450 aa) fasta scores: E(): 0%2C76.0%25 id in 445 aa gene gene3574 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3629 YPO3630 YPO3630 yjcE yjcE 4048310 4049959 + putative putative Na(+)/H(+) exchanger protein Similar to Escherichia coli putative Na(+)/H(+) exchanger YjcE SW:YJCE_ECOLI (P32703) (549 aa) fasta scores: E(): 0%2C 75.1%25 id in 547 aa gene gene3575 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3630 YPO3631 YPO3631 YPO3631 4050177 4051364 - putative exported protein no significant database matches gene gene3576 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3631 YPO3632 YPO3632 ddg ddg 4051516 4052436 - putative membrane protein Similar to Escherichia coli Ddg protein SW:DDG_ECOLI (P76522) (306 aa) fasta scores: E(): 0%2C 67.8%25 id in 304 aa%2Cand to Escherichia coli lipid a biosynthesis lauroyl acyltransferase HtrB SW:HTRB_ECOLI (P24187) (306 aa) fasta scores: E(): 0%2C 58.5%25 id in 306 aa gene gene3577 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3632 YPO3633 YPO3633 YPO3633 4053161 4054219 + putative periplasmic binding protein Similar to Escherichia coli from bases 1598243 to 1608845 TR:P76142 (EMBL:AE000249) (340 aa) fasta scores: E(): 1e-15%2C 29.2%25 id in 312 aa%2C and to Streptomyces coelicolor putative secreted solute-binding lipoprotein scf43.19C TR:Q9RD69 (EMBL:AL136502) (360 aa) fasta scores: E(): 2.3e-16%2C 28.3%25 id in 315 aa gene gene3578 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3633 YPO3634 YPO3634 YPO3634 4054423 4055919 + ABC transporter ATP binding protein Similar to Streptomyces coelicolor ABC transporter ATP binding protein Sc3f9.02 TR:O69942 (EMBL:AL023862) (505 aa) fasta scores: E(): 0%2C 36.9%25 id in 502 aa%2C and to Bacillus halodurans ribose ABC transporter RbsA TR:Q9K6J9 (EMBL:AP001519) (499 aa) fasta scores: E(): 0%2C 38.3%25 id in 496 aa gene gene3579 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3634 YPO3635 YPO3635 YPO3635 4055912 4056901 + putative branched-chain amino acid transport system%2C permease component Similar to Escherichia coli ribose transport system permease protein RbsC SW:RBSC_ECOLI (P04984) (321 aa) fasta scores: E(): 7.8e-29%2C 35.4%25 id in 297 aa%2C and to Bacillus subtilis ribose transport system permease protein RbsC SW:RBSC_BACSU (P36948) (323 aa) fasta scores: E(): 7.7e-31%2C34.3%25 id in 300 aa gene gene3580 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3635 YPO3636 YPO3636 YPO3636 4056903 4057856 + putative ABC transporter%2C permease protein Similar to Bacillus subtilis ribose transport system permease protein RbsC SW:RBSC_BACSU (P36948) (323 aa) fasta scores: E(): 2.6e-30%2C 37.2%25 id in 304 aa%2C and to Bacillus halodurans ribose ABC transporter RbsC TR:Q9K6J8 (EMBL:AP001519) (314 aa) fasta scores: E(): 5.8e-30%2C 36.5%25 id in 299 aa gene gene3581 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3636 YPO3637 YPO3637 YPO3637 4057875 4059512 + putative carbohydrate kinase Similar to Escherichia coli ribitol kinase RtlK TR:AAG01884 (EMBL:AY005817) (534 aa) fasta scores: E(): 0%2C45.9%25 id in 529 aa%2C and to Klebsiella pneumoniae ribitol kinase RbtK TR:O52716 (EMBL:AF045244) (535 aa) fasta scores: E(): 0%2C 45.1%25 id in 526 aa gene gene3582 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3637 YPO3638 YPO3638 YPO3638 4059509 4060114 + putative phosphosugar isomerase/binding protein Similar to Aquifex aeolicus hypothetical protein Aq_1546 SW:YF46_AQUAE (O67500) (322 aa) fasta scores: E(): 1.1e-21%2C 38.3%25 id in 180 aa%2C and to Haemophilus influenzae hypothetical protein Hi1678 SW:YRBH_HAEIN (P45313) (337 aa) fasta scores: E(): 3e-21%2C 35.1%25 id in 185 aa gene gene3583 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3638 YPO3639 YPO3639 yghU yghU 4060304 4061158 - putative glutathione S-transferase Similar to Escherichia coli hypothetical 32.4 kDa protein in gsp-hybG intergenic region YghU SW:YGHU_ECOLI (Q46845) (288 aa) fasta scores: E(): 0%2C 70.3%25 id in 279 aa%2Cand to Pseudomonas aeruginosa probable glutathione S-transferase Pa1033 TR:AAG04422 (EMBL:AE004536) (213 aa) fasta scores: E(): 0%2C 42.7%25 id in 225 aa gene gene3584 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3639 YPO3640 YPO3640 YPO3640 4061409 4062755 + putative exported protein Similar to Campylobacter jejuni putative periplasmic protein Cj0728 TR:Q9PPH9 (EMBL:AL139076) (441 aa) fasta scores: E(): 0%2C 50.7%25 id in 440 aa gene gene3585 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3640 YPO3641 YPO3641 YPO3641 4062862 4064037 - hypothetical protein no significant database hits gene gene3586 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3641 YPO3642 YPO3642 tnp tnp 4064442 4064900 + transposase for the IS1541 insertion element Similar to Salmonella typhimurium and Salmonella typhi transposase for insertion sequence IS200%2C TnpA%2CSW:TNPA_SALTY (Q57334) (152 aa) fasta scores: E(): 0%2C 93.4%25 id in 152 aa. Almost identical to the Yersinia pseudotuberculosis IS1541-like element transposase Tnp TR:Q9X9F5 (EMBL:AJ238014) (152 aa) fasta scores: E(): 0%2C99.3%25 id in 152 aa gene gene3587 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3642 YPO3643 YPO3643 cspa2 cspa2 4065083 4065295 - major cold shock protein Cspa2 Similar to Yersinia enterocolitica major cold shock protein Cspa1 TR:Q9RIF2 (EMBL:U82821) (70 aa) fasta scores: E(): 2e-29%2C 95.7%25 id in 70 aa%2C and to Y. enterocolitica major cold shock protein Cspa2 TR:Q9RIF1 (EMBL:U82821) (70 aa) fasta scores: E(): 2.6e-28%2C 94.3%25 id in 70 aa%2C and identical to the previously sequenced Yersinia pestis hypothetical 7.5 kDa protein TR:O34279 (EMBL:Z97978) (70 aa) fasta scores: E(): 2.2e-30%2C 100.0%25 id in 70 aa. This CDS is almost identical (97.4%25) to the one immediately upstream (YPO3644). It is also similar to YPO2659 (88.0%25 identity in 75 aa overlap)%2C YPO1655 (78.6%25 identity in 70 aa overlap)%2C YPO2595 ( 72.2%25 identity in 72 aa overlap)%2CYPO1746 (76.1%25 identity in 67 aa overlap) and YPO1398 (50.0%25 identity in 70 aa overlap) gene gene3588 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3643 YPO3644 YPO3644 cspa1 cspa1 4065555 4065767 - major cold shock protein Cspa1 Similar to Yersinia enterocolitica major cold shock protein Cspa1 TR:Q9RIF2 (EMBL:U82821) (70 aa) fasta scores: E(): 2.1e-29%2C 97.1%25 id in 70 aa%2C and to Y. enterocolitica major cold shock protein Cspa2 TR:Q9RIF1 (EMBL:U82821) (70 aa) fasta scores: E(): 2.7e-28%2C 95.7%25 id in 70 aa%2C and to the previously sequenced Yersinia pestis hypothetical 7.5 kDa protein TR:O34279 (EMBL:Z97978) (70 aa) fasta scores: E(): 1e-29%2C 98.6%25 id in 70 aa. This CDS is almost identical (97.4%25) to the one immediately downstream (YPO36433). It is also similar to YPO2659 (90.7%25 identity in 75 aa overlap)%2CYPO1655 (80.0%25 identity in 70 aa overlap)%2C YPO2595 ( 73.6%25 identity in 72 aa overlap)%2C YPO1746 (77.6%25 identity in 67 aa overlap) and YPO1398 (51.4%25 identity in 70 aa overlap) gene gene3589 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3644 YPO3645 YPO3645 YPO3645 4065860 4066024 - hypothetical protein no significant database hits gene gene3590 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3645 YPO3646 YPO3646 pcp pcp 4066300 4066767 - outer membrane lipoprotein Similar to Yersinia enterocolitica outer membrane lipoprotein Pcp precursor Pcp or PcpY SW:PCP_YEREN (P31484) (155 aa) fasta scores: E(): 0%2C 73.7%25 id in 156 aa%2C and to Salmonella typhimurium outer membrane lipoprotein SlyB precursor slyB SW:SLYB_SALTY (Q53549) (155 aa) fasta scores: E(): 4.2e-31%2C 69.2%25 id in 156 aa. Similar to YPO2373 (69.9%25 identity in 156 aa overlap) and YPO0752 (pseudogene) gene gene3591 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3646 YPO3647 YPO3647 YPO3647 4067228 4068055 + conserved hypothetical protein Similar to Archaeoglobus fulgidus hypothetical protein AF1509 TR:O28763 (EMBL:AE000998) (262 aa) fasta scores: E(): 2.5e-11%2C 28.7%25 id in 272 aa%2C and to Deinococcus radiodurans conserved hypothetical protein DR1823 TR:Q9RTE2 (EMBL:AE002022) (253 aa) fasta scores: E(): 3.6e-07%2C 29.5%25 id in 207 aa gene gene3592 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3647 YPO3648 YPO3648 YPO3648 4068120 4069010 + putative 2-hydroxy-3-oxopropionate reductase Similar to Escherichia coli 2-hydroxy-3-oxopropionate reductase GarR or B3125 SW:GARR_ECOLI (P23523) (294 aa) fasta scores: E(): 1e-24%2C31.4%25 id in 283 aa%2C and to Bacillus subtilis hypothetical 30.7 kDa protein in mcpC-kinA intergenic region YkwC SW:YKWC_BACSU (O34948) (288 aa) fasta scores: E(): 1.1e-23%2C32.1%25 id in 290 aa gene gene3593 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3648 YPO3649 YPO3649 YPO3649 4069188 4069583 + putative gamma carboxymuconolactone decarboxylase Similar to Agrobacterium radiobacter gamma carboxymuconolactone decarboxylase PcaC TR:Q9KX42 (EMBL:U32867) (144 aa) fasta scores: E(): 6.3e-17%2C 41.0%25 id in 117 aa%2C and to Pseudomonas aeruginosa gamma-carboxymuconolactone decarboxylase Pcac or Pa0232 TR:AAG03621 (EMBL:AE004461) (133 aa) fasta scores: E(): 3.9e-19%2C 43.6%25 id in 117 aa gene gene3594 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3649 YPO3650 YPO3650 YPO3650 4069737 4071101 + putative metabolite transport protein Similar to Escherichia coli proline/betaine transporter ProP SW:PROP_ECOLI (P30848) (500 aa) fasta scores: E(): 5.9e-26%2C 27.4%25 id in 449 aa gene gene3595 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3650 YPO3651 YPO3651 YPO3651 4071191 4071853 + putative GntR-family transcriptional regulatory protein Similar to Streptomyces coelicolor putative GntR-family transcriptional regulator SC9A4.30 TR:CAC01657 (EMBL:AL391072) (224 aa) fasta scores: E(): 8.8e-11%2C 31.8%25 id in 176 aa%2C and to Pseudomonas aeruginosa probable transcriptional regulator PA0797 TR:AAG04186 (EMBL:AE004515) (240 aa) fasta scores: E(): 1.1e-10%2C 29.6%25 id in 216 aa gene gene3596 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3651 YPO3652 YPO3652 YPO3652 4071919 4072395 + hypothetical protein no significant database hits gene gene3597 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3652 YPO3653 YPO3653 YPO3653 4072626 4072745 + putative colicin immunity protein Similar to the C-terminal region of Escherichia coli colicin D immunity protein Cdi SW:IMMD_ECOLI (P11899) (87 aa) fasta scores: E(): 0.86%2C 38.7%25 id in 31 aa gene gene3598 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3653 YPO3654 YPO3654 fiS fiS 4073149 4073445 - DNA-binding protein Fis Similar to Escherichia coli and Salmonella typhimurium DNA-binding protein Fis SW:FIS_ECOLI (P11028) (98 aa) fasta scores: E(): 0%2C 98.0%25 id in 98 aa%2C and to Serratia marcescens small DNA binding protein Fis TR:AAC77881 (EMBL:AF040378) (98 aa) fasta scores: E(): 0%2C98.0%25 id in 98 aa gene gene3599 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3654 YPO3655 YPO3655 YPO3655 4073470 4074435 - conserved hypothetical protein Similar to Escherichia coli hypothetical protein YhdG SW:YHDG_ECOLI (P25717) (321 aa) fasta scores: E(): 0%2C87.9%25 id in 321 aa%2C and to Serratia marcescens YhdG homolog TR:O52532 (EMBL:AF040378) (334 aa) fasta scores: E(): 0%2C92.2%25 id in 321 aa gene gene3600 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3655 YPO3656 YPO3656 prmA prmA 4075024 4075905 - ribosomal protein L11 methyltransferase Similar to Escherichia coli ribosomal protein L11 methyltransferase PrmA SW:PRMA_ECOLI (P28637) (293 aa) fasta scores: E(): 0%2C 85.3%25 id in 292 aa%2C and to Vibrio cholerae ribosomal protein L11 methyltransferase Vc0293 TR:Q9KV64 (EMBL:AE004117) (295 aa) fasta scores: E(): 0%2C70.3%25 id in 293 aa gene gene3601 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3656 YPO3657 YPO3657 panF panF 4075981 4077435 - sodium/pantothenate symporter Similar to Escherichia coli sodium/pantothenate symporter PanF SW:PANF_ECOLI (P16256) (483 aa) fasta scores: E(): 0%2C 82.8%25 id in 470 aa%2C and to Haemophilus influenzae sodium/pantothenate symporter PanF or Hi0975 SW:PANF_HAEIN (P44963) (484 aa) fasta scores: E(): 0%2C 63.1%25 id in 472 aa gene gene3602 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3657 YPO3657a YPO3657a yhdT yhdT 4077425 4077667 - putative membrane protein Similar to Escherichia coli hypothetical 9.1 kDa protein in accC-panF intergenic region YhdT SW:YHDT_ECOLI (P45566) (80 aa) fasta scores: E(): 1.1e-20%2C 68.4%25 id in 79 aa%2C and to Haemophilus influenzae hypothetical protein Hi0974.1 SW:YHDT_HAEIN (P46455) (85 aa) fasta scores: E(): 1.2e-12%2C 47.4%25 id in 78 aa gene gene3603 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3657a YPO3657b YPO3657b YPO3657b 4077566 4077634 - gene gene3605 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3657b YPO3657b YPO3657b YPO3657b 4077479 4077536 - gene gene3604 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3657b YPO3658 YPO3658 accC accC 4079025 4080374 - biotin carboxylase Similar to Escherichia coli biotin carboxylase AccC or FabG SW:ACCC_ECOLI (P24182) (449 aa) fasta scores: E(): 0%2C 92.4%25 id in 448 aa%2C and to Vibrio cholerae acetyl-coa carboxylase%2C biotin carboxylase Vc0295 TR:Q9KV62 (EMBL:AE004117) (447 aa) fasta scores: E(): 0%2C 85.9%25 id in 447 aa gene gene3606 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3658 YPO3659 YPO3659 accB accB 4080386 4080850 - biotin carboxyl carrier protein of acetyl-CoA carboxylase Similar to Escherichia coli biotin carboxyl carrier protein of acetyl-CoA carboxylase AccB or FabE SW:BCCP_ECOLI (P02905) (156 aa) fasta scores: E(): 0%2C 82.9%25 id in 158 aa%2C and to Pseudomonas aeruginosa biotin carboxyl carrier protein of acetyl-CoA carboxylase AccB or FabE or Pa4847 SW:BCCP_PSEAE (P37799) (156 aa) fasta scores: E(): 1.1e-27%2C 65.8%25 id in 155 aa gene gene3607 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3659 YPO3660 YPO3660 aroQ aroQ 4081008 4081460 - putative class II dehydroquinase Similar to Actinobacillus pleuropneumoniae 3-dehydroquinate dehydratase AroQ SW:AROQ_ACTPL (P43877) (154 aa) fasta scores: E(): 0%2C 66.9%25 id in 142 aa%2C and to Aeromonas salmonicida subsp. salmonicida type II 3-dehydroquinase AroD TR:Q9ZIW1 (EMBL:AF011408) (149 aa) fasta scores: E(): 0%2C 73.3%25 id in 146 aa gene gene3608 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3660 YPO3661 YPO3661 YPO3661 4081723 4082343 - putative membrane protein Similar to Escherichia coli from bases 2030342 to 2040230 TR:P76343 (EMBL:AE000288) (211 aa) fasta scores: E(): 0%2C 69.0%25 id in 203 aa%2C and to Pseudomonas aeruginosa hypothetical protein Pa4691 TR:AAG08077 (EMBL:AE004883) (202 aa) fasta scores: E(): 3e-24%2C 41.8%25 id in 196 aa gene gene3609 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3661 YPO3662 YPO3662 YPO3662 4082343 4083443 - conserved hypothetical protein Similar to Escherichia coli hypothetical protein B1971 TR:P76342 (EMBL:AE000288) (334 aa) fasta scores: E(): 0%2C 75.4%25 id in 334 aa%2C and to Pasteurella multocida hypothetical protein PM0537 TR:AAK02621 (EMBL:AE006089) (343 aa) fasta scores: E(): 0%2C 64.3%25 id in 333 aa gene gene3610 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3662 YPO3663 YPO3663 yhdH yhdH 4083666 4084643 - probable zinc-binding dehydrogenase Similar to Escherichia coli protein YhdH SW:YHDH_ECOLI (P26646) (324 aa) fasta scores: E(): 0%2C 74.4%25 id in 324 aa%2C and to Vibrio cholerae zinc-binding alcohol dehydrogenase Vc0026 TR:Q9KVW2 (EMBL:AE004094) (326 aa) fasta scores: E(): 0%2C 63.2%25 id in 323 aa gene gene3611 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3663 YPO3664 YPO3664 yhdA yhdA 4085044 4086960 + putative exported protein Similar to Escherichia coli hypothetical 73.3 kDa protein in mreB-accB intergenic region YhdA SW:YHDA_ECOLI (P13518) (646 aa) fasta scores: E(): 0%2C 50.7%25 id in 641 aa%2Cand to Vibrio cholerae MshA biogenesis protein Vc0398 TR:Q9KUW1 (EMBL:AE004128) (673 aa) fasta scores: E(): 0%2C36.1%25 id in 646 aa gene gene3612 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3664 YPO3665 YPO3665 envB envB 4087297 4088340 + rod shape-determining protein MreB Similar to Escherichia coli rod shape-determining protein MreB or EnvB or RodY SW:MREB_ECOLI (P13519) (347 aa) fasta scores: E(): 0%2C 99.1%25 id in 347 aa%2C and to Vibrio cholerae MreB or Vc0415 TR:Q9ZA92 (EMBL:AF079234) (347 aa) fasta scores: E(): 0%2C 90.2%25 id in 347 aa gene gene3613 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3665 YPO3666 YPO3666 mreC mreC 4088544 4089539 + rod shape-determining protein MreC Similar to Escherichia coli rod shape-determining protein MreC SW:MREC_ECOLI (P16926) (367 aa) fasta scores: E(): 0%2C 77.9%25 id in 335 aa%2C and to Haemophilus influenzae rod shape-determining protein MreC or Hi0038 SW:MREC_HAEIN (P44475) (351 aa) fasta scores: E(): 0%2C 51.2%25 id in 295 aa gene gene3614 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3666 YPO3667 YPO3667 mreD mreD 4089536 4090024 + rod shape-determining protein MreD Similar to Escherichia coli rod shape-determining protein MreD SW:MRED_ECOLI (P16927) (162 aa) fasta scores: E(): 0%2C 76.1%25 id in 159 aa%2C and to Vibrio cholerae rod shape-determining protein MreD Vc0417 TR:Q9KUU8 (EMBL:AE004129) (162 aa) fasta scores: E(): 0%2C 55.5%25 id in 155 aa gene gene3615 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3667 YPO3668 YPO3668 yhdE yhdE 4090038 4090631 + putative inhibitor of septum formation Similar to Escherichia coli protein YhdE SW:YHDE_ECOLI (P25536) (197 aa) fasta scores: E(): 0%2C 70.4%25 id in 196 aa%2C and to Vibrio cholerae Maf protein Vc0418 TR:Q9KUU7 (EMBL:AE004129) (205 aa) fasta scores: E(): 4.1e-31%2C 55.1%25 id in 185 aa gene gene3616 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3668 YPO3669 YPO3669 cafA cafA 4090621 4092090 + ribonuclease G Similar to Escherichia coli ribonuclease G CafA or Rng SW:RNG_ECOLI (P25537) (488 aa) fasta scores: E(): 0%2C90.2%25 id in 488 aa%2C and to Vibrio cholerae cytoplasmic axial filament protein Vc0419 TR:Q9KUU6 (EMBL:AE004129) (489 aa) fasta scores: E(): 0%2C 79.8%25 id in 489 aa gene gene3617 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3669 YPO3670 YPO3670 YPO3670 4092184 4096107 + putative exported protein Similar to Vibrio cholerae hypothetical protein Vc0420 TR:Q9KUU5 (EMBL:AE004129) (1291 aa) fasta scores: E(): 0%2C 29.3%25 id in 1341 aa%2C and to Pseudomonas aeruginosa hypothetical protein Pa4476 TR:AAG07864 (EMBL:AE004861) (1276 aa) fasta scores: E(): 9.1e-32%2C 23.7%25 id in 1335 aa gene gene3618 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3670 YPO3671 YPO3671 YPO3671 4096104 4096973 + putative carbon-nitrogen hydrolase Similar to Mus musculus nitrilase 1 nit1 TR:Q9R1N4 (EMBL:AF069988) (323 aa) fasta scores: E(): 0%2C 38.4%25 id in 284 aa%2C and to Vibrio cholerae hypothetical protein Vc0421 vc0421 TR:Q9KUU4 (EMBL:AE004129) (275 aa) fasta scores: E(): 0%2C 48.1%25 id in 270 aa gene gene3619 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3671 YPO3672 YPO3672 tldD tldD 4096985 4098430 + putative modulator of DNA gyrase Similar to Escherichia coli TldD protein%2C modulator of interaction between LetD protein and DNA gyrase SW:TLDD_ECOLI (P46473) (481 aa) fasta scores: E(): 0%2C 84.4%25 id in 481 aa%2C and to Vibrio cholerae TldD protein VC0422 TR:Q9KUU3 (EMBL:AE004129) (481 aa) fasta scores: E(): 0%2C69.8%25 id in 480 aa gene gene3620 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3672 YPO3673 YPO3673 YPO3673 4098633 4101491 - putative insecticidal toxin Similar to Photorhabdus luminescens insecticidal toxin complex protein TccC TR:O85157 (EMBL:AF047028) (1043 aa) fasta scores: E(): 0%2C 52.2%25 id in 718 aa. Similar to YPO3674 (79.1%25 identity in 949 aa overlap)%2C YPO2312 (52.1%25 identity in 729 aa overlap) and YPO2380 (52.2%25 identity in 696 aa overlap). Note the differing C-terminus of the product of this CDS gene gene3621 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3673 YPO3674 YPO3674 YPO3674 4101516 4104551 - putative insecticidal toxin Similar to Photorhabdus luminescens insecticidal toxin complex protein TccC TR:O85157 (EMBL:AF047028) (1043 aa) fasta scores: E(): 0%2C 53.7%25 id in 680 aa%2C to Serratia entomophila SepC TR:AAG09644 (EMBL:AF135182) (973 aa) fasta scores: E(): 0%2C 53.3%25 id in 685 aa. Similar to YPO3673 (79.1%25 identity in 949 aa overlap)%2C YPO2312 (50.3%25 identity in 773 aa overlap) and YPO2380 (51.4%25 identity in 699 aa overlap). Note the differing C-terminus of the product of this CDS gene gene3622 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3674 YPO3675 YPO3675 YPO3675 4104548 4104907 - putative exported protein no significant database matches gene gene3623 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3675 YPO3676 YPO3676 YPO3676 4104904 4105305 - putative phage-related protein Similar to Bacteriophage P27 hypothetical 14.1 kDa protein TR:Q9MBZ3 (EMBL:AJ249351) (125 aa) fasta scores: E(): 1.7e-26%2C 52.5%25 id in 120 aa%2C and to bacteriophage PS3 Gp19 TR:O80284 (EMBL:AJ011579) (132 aa) fasta scores: E(): 3.3e-19%2C 46.0%25 id in 137 aa gene gene3624 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3676 YPO3677 YPO3677 YPO3677 4105318 4105620 - putative phage-related protein Similar to bacteriophage PS3 gp13 13 TR:O80283 (EMBL:AJ011579) (105 aa) fasta scores: E(): 3.2e-14%2C 41.7%25 id in 84 aa gene gene3625 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3677 YPO3678 YPO3678 tcaC tcaC 4105754 4110244 - insecticidal toxin complex Similar to Photorhabdus luminescens insecticidal toxin complex protein TcaC TR:O85153 (EMBL:AF046867) (1485 aa) fasta scores: E(): 0%2C 48.6%25 id in 1517 aa%2C and to Serratia entomophila SepB TR:AAG09643 (EMBL:AF135182) (1428 aa) fasta scores: E(): 0%2C 44.5%25 id in 1515 aa. Contains a 2x repeat: RDPDLS between codons 480..491. gene gene3626 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3678 YPO3679 YPO3679 tcaB tcaB 4110301 4113893 - insecticidal toxin complex protein TcaB (pseudogene) Similar to Photorhabdus luminescens insecticidal toxin complex protein TcaB TR:O85152 (EMBL:AF046867) (1189 aa) fasta scores: E(): 0%2C 42.1%25 id in 1240 aa. There is a frameshift following codon 456. The frameshift occurs within within a homopolymeric tract of 6A. The sequence has been checked and is believed to be correct pseudogene gene3627 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3679 YPO3681 YPO3681 YPO3681 4113934 4116435 - putative insecticial toxin Similar in its central region to Photorhabdus luminescens insecticidal toxin complex protein TcaA TR:O85151 (EMBL:AF046867) (1095 aa) fasta scores: E(): 2.1e-19%2C 35.2%25 id in 401 aa. Contains colied-coil domain at approx. residues 683..710 gene gene3628 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3681 YPO3682 YPO3682 YPO3682 4116671 4117537 - putative lysR-family transcriptional regulatory protein Similar to Erwinia amylovora RlsA protein TR:O54509 (EMBL:AJ131559) (266 aa) fasta scores: E(): 6.3e-06%2C 28.5%25 id in 228 aa%2C and to Escherichia coli hypothetical transcriptional regulator YgfI SW:YGFI_ECOLI (P52044) (303 aa) fasta scores: E(): 2.8e-06%2C 27.8%25 id in 198 aa gene gene3629 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3682 YPO3683 YPO3683 YPO3683 4117798 4118709 - probable lysR-family transcriptional regulatory protein Similar to Escherichia coli hypothetical transcriptional regulator YhcS SW:YHCS_ECOLI (P45691) (309 aa) fasta scores: E(): 0%2C 80.7%25 id in 301 aa%2C and to Pseudomonas aeruginosa probable transcriptional regulator PA2877 TR:AAG06265 (EMBL:AE004714) (297 aa) fasta scores: E(): 4.1e-27%2C 30.4%25 id in 296 aa gene gene3630 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3683 YPO3684 YPO3684 YPO3684 4119012 4119215 + putative membrane protein Similar to Escherichia coli hypothetical 10.3 kDa protein in argR-cafA intergenic region YhcR SW:YHCR_ECOLI (P46478) (90 aa) fasta scores: E(): 1.4e-24%2C 81.8%25 id in 66 aa%2C and to Escherichia coli hypothetical 8.9 kDa protein in slyA-sodC intergenic region YdhI SW:YDHI_ECOLI (P76184) (78 aa) fasta scores: E(): 0.017%2C 34.4%25 id in 61 aa gene gene3631 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3684 YPO3685 YPO3685 yhcQ yhcQ 4119223 4120158 + putative HlyD family secretion protein Similar to Escherichia coli hypothetical protein YhcQ SW:YHCQ_ECOLI (P46482) (310 aa) fasta scores: E(): 0%2C72.3%25 id in 311 aa%2C and to Escherichia coli fusaric acid resistance protein FusE TR:P76893 (EMBL:D90807) (329 aa) fasta scores: E(): 0%2C 38.5%25 id in 288 aa gene gene3632 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3685 YPO3686 YPO3686 yhcP yhcP 4120160 4122115 + putative membrane protein Similar to Escherichia coli hypothetical 73.6 kDa protein in argR-cafA intergenic region YhcP SW:YHCP_ECOLI (P46481) (655 aa) fasta scores: E(): 0%2C 64.6%25 id in 642 aa gene gene3633 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3686 YPO3687 YPO3687 YPO3687 4122382 4123850 + putative succinate-semialdehyde dehydrogenase (pseudogene) Similar to Escherichia coli succinate-semialdehyde dehydrogenase [NADP+] GabD SW:GABD_ECOLI (P25526) (482 aa) fasta scores: E(): 0%2C 56.4%25 id in 468 aa%2C and to Alcaligenes eutrophus succinate semialdehyde dehydrogenase GabD TR:Q9RBF6 (EMBL:AF175740) (483 aa) fasta scores: E(): 0%2C 54.1%25 id in 475 aa. There is a frameshift following codon 364. The frameshift occurs within a homopolymeric tract of 6G. The sequence has been checked and is believed to be correct pseudogene gene3634 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3687 YPO3689 YPO3689 YPO3689 4124060 4124518 + putative ribonuclease Similar to Bacillus amyloliquefaciens ribonuclease precursor SW:RNBR_BACAM (P00648) (157 aa) fasta scores: E(): 1.9e-23%2C 52.4%25 id in 124 aa%2C and to Bacillus circulans ribonuclease SW:RN_BACCI (P35078) (110 aa) fasta scores: E(): 2e-22%2C 62.0%25 id in 100 aa gene gene3635 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3689 YPO3690 YPO3690 YPO3690 4124523 4124804 + putative ribonuclease inhibitor Similar to Bacillus amyloliquefaciens Barstar SW:BARS_BACAM (P11540) (89 aa) fasta scores: E(): 0.00075%2C33.3%25 id in 60 aa%2C and to Escherichia coli hypothetical protein YhcO SW:YHCO_ECOLI (P46480) (90 aa) fasta scores: E(): 9.4e-16%2C 53.0%25 id in 83 aa gene gene3636 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3690 YPO3691 YPO3691 YPO3691 4124916 4125464 - conserved hypothetical protein Similar to Escherichia coli hypothetical protein YjgA or X96 SW:YJGA_ECOLI (P26650) (183 aa) fasta scores: E(): 0%2C 78.0%25 id in 182 aa%2C and to Haemophilus influenzae hypothetical protein HI1151 SW:YJGA_HAEIN (P45076) (178 aa) fasta scores: E(): 5.9e-31%2C 56.6%25 id in 175 aa gene gene3637 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3691 YPO3692 YPO3692 pmbA pmbA 4125645 4126985 + Putative modulator of DNA gyrase Similar to Escherichia coli PmbA protein or TldE SW:PMBA_ECOLI (P24231) (450 aa) fasta scores: E(): 0%2C 82.7%25 id in 446 aa%2C and to Vibrio cholerae PmbA protein Vc2535 TR:Q9KP44 (EMBL:AE004322) (447 aa) fasta scores: E(): 0%2C66.9%25 id in 447 aa gene gene3638 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3692 YPO3693 YPO3693 YPO3693 4127240 4127878 + hypothetical protein Weakly similar to Haemophilus influenzae methionine aminopeptidase Map or HI1722 SW:AMPM_HAEIN (P44421) (268 aa) fasta scores: E(): 2.1%2C 26.6%25 id in 199 aa%2C and to the C-terminal region of Mycobacterium tuberculosis prolyl-tRNA synthetase ProS or Rv2845c or Mtcy24a1.12 SW:SYP_MYCTU (O05814) (582 aa) fasta scores: E(): 1.9%2C 27.3%25 id in 128 aa gene gene3639 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3693 YPO3694 YPO3694 YPO3694 4128086 4128472 + putative cytochrome Similar to Escherichia coli soluble cytochrome B562 precursor CybC SW:C562_ECOLI (P00192) (128 aa) fasta scores: E(): 8.3e-21%2C 51.6%25 id in 128 aa%2C and to the previously sequenced Yersinia pestis cytochrome C CybC TR:Q9X6B1 (EMBL:AF135170) (127 aa) fasta scores: E(): 6.3e-15%2C 46.1%25 id in 115 aa gene gene3640 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3694 YPO3695 YPO3695 rnk rnk 4128696 4129106 - regulator of nucleoside diphosphate kinase Similar to Escherichia coli regulator of nucleoside diphosphate kinase Rnk SW:RNK_ECOLI (P40679) (136 aa) fasta scores: E(): 0%2C 64.9%25 id in 134 aa%2C and to Vibrio cholerae regulator of nucleoside diphosphate kinase VCA0607 TR:Q9KLY4 (EMBL:AE004391) (135 aa) fasta scores: E(): 2.1e-19%2C 46.2%25 id in 132 aa gene gene3641 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3695 YPO3696 YPO3696 olgH olgH 4129459 4131126 - putative trehalose-6-phosphate hydrolase Similar to Escherichia coli trehalose-6-phosphate hydrolase TreC or OlgH SW:TREC_ECOLI (P28904) (551 aa) fasta scores: E(): 0%2C 74.0%25 id in 547 aa%2C and to Vibrio cholerae trehalose-6-phosphate hydrolase Vc0911 TR:Q9KTJ1 (EMBL:AE004175) (562 aa) fasta scores: E(): 0%2C 60.9%25 id in 550 aa gene gene3642 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3696 YPO3697 YPO3697 treB treB 4131221 4132672 - PTS system%2C trehalose-specific IIBC component Similar to Escherichia coli PTS system%2Ctrehalose-specific IIBC component TreB SW:PTTB_ECOLI (P36672) (473 aa) fasta scores: E(): 0%2C 80.5%25 id in 471 aa%2Cand to Vibrio cholerae PTS system%2C trehalose-specific IIBC component Vc0910 TR:Q9KTJ2 (EMBL:AE004175) (478 aa) fasta scores: E(): 0%2C 70.0%25 id in 474 aa gene gene3643 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3697 YPO3698 YPO3698 treR treR 4133047 4134000 - trehalose operon repressor Similar to Escherichia coli trehalose operon repressor TreR SW:TRER_ECOLI (P36673) (315 aa) fasta scores: E(): 0%2C 62.0%25 id in 316 aa%2C and to Salmonella typhimurium trehalose operon repressor TreR SW:TRER_SALTY (P36674) (315 aa) fasta scores: E(): 0%2C 60.8%25 id in 316 aa gene gene3644 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3698 YPO3699 YPO3699 YPO3699 4134234 4134710 - putative exported protein no significant database matches gene gene3645 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3699 YPO3700 YPO3700 ypmt1.57c ypmt1.57c 4134826 4135608 - insertion sequence IS100%2C ATP-binding protein Similar to Escherichia coli insertion sequence IS21 putative ATP-binding protein%2C IstB SW:ISTB_ECOLI (P15026) (265 aa) fasta scores: E(): 0%2C 47.4%25 id in 249 aa. Also almost identical to Yersinia pestis and Escherichia coli putative IS100 transposase ypmt1.57c TR:Q9R3L5 (EMBL:AL117211) (260 aa) fasta scores: E(): 0%2C 99.6%25 id in 260 aa. gene gene3646 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3700 YPO3701 YPO3701 y1093 y1093 4135605 4136627 - transposase for insertion sequence IS100 Similar to Escherichia coli transposase for insertion sequence element IS21 IstA SW:ISTA_ECOLI (P15025) (390 aa) fasta scores: E(): 3e-27%2C 33.1%25 id in 329 aa. Identical to the previously sequenced Yersinia pestis%2CYersinia pseudotuberculosis%2C and Escherichia coli pesticin plasmid insertion sequence transposase Y1055 TR:P74993 (EMBL:U59875) (340 aa) fasta scores: E(): 0%2C 100.0%25 id in 340 aa gene gene3647 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3701 YPO3702 YPO3702 YPO3702 4136714 4137028 + insertion element IS1661 DNA-binding protein (partial) This CDS has been disrupted by the insertion of an IS100 element. This truncated CDS shows similarities to Escherichia coli insertion element IS1397 OrfA hypothetical 20.1 kDa protein SW:YI9A_ECOLI (Q47309) (173 aa) fasta scores: E(): 37.3%25 identity in 102 aa overlap.%3B~was marked partial gene gene3648 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3702 YPO3703 YPO3703 YPO3703 4137082 4137867 + transposase for insertion sequence IS1661 Similar to Escherichia coli insertion sequence IS1397 transposase%2C OrfB TR:Q47310 (EMBL:X92970) (240 aa) fasta scores: E(): 0%2C 53.0%25 id in 234 aa gene gene3649 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3703 YPO3704 YPO3704 YPO3704 4137910 4138983 - conserved hypothetical protein (pseudogene) This CDS is disrupted by the insertion of an IS166 element. It is lacking ~~250 amino acids at its C-terminal region. This truncated CDS is similar to Escherichia coli O157:H7 Z0260 protein TR:AAG54529 (EMBL:AE005198) (616 aa) fasta scores: E(): 0%2C 51.0%25 id in 357 aa%2C and to Vibrio cholerae hypothetical protein Vca0110 TR:Q9KN55 (EMBL:AE004353) (589 aa) fasta scores: E(): 0%2C 45.7%25 id in 350 aa pseudogene gene3650 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3704 YPO3705 YPO3705 YPO3705 4138983 4139423 - conserved hypothetical protein Similar to Vibrio cholerae hypothetical protein VCA0109 TR:Q9KN56 (EMBL:AE004353) (145 aa) fasta scores: E(): 4.2e-13%2C 36.7%25 id in 128 aa%2C and to Pseudomonas aeruginosa hypothetical protein PA1659 TR:AAG05048 (EMBL:AE004593) (135 aa) fasta scores: E(): 5.6e-08%2C 33.9%25 id in 124 aa gene gene3651 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3705 YPO3706 YPO3706 YPO3706 4139430 4140911 - conserved hypothetical protein Similar to Vibrio cholerae hypothetical protein VCA0108 TR:Q9KN57 (EMBL:AE004353) (492 aa) fasta scores: E(): 0%2C 77.0%25 id in 473 aa%2C and to Pseudomonas aeruginosa hypothetical protein PA1658 TR:AAG05047 (EMBL:AE004593) (491 aa) fasta scores: E(): 0%2C 66.7%25 id in 474 aa gene gene3652 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3706 YPO3707 YPO3707 YPO3707 4140979 4141476 - conserved hypothetical protein Similar to Escherichia coli hypothetical protein 498 TR:O52670 (EMBL:AF044503) (166 aa) fasta scores: E(): 0%2C62.0%25 id in 166 aa%2C and to Vibrio cholerae hypothetical protein VCA0107 TR:Q9KN58 (EMBL:AE004353) (168 aa) fasta scores: E(): 0%2C 61.3%25 id in 160 aa gene gene3653 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3707 YPO3708 YPO3708 YPO3708 4142000 4142518 + conserved hypothetical protein Similar to Escherichia coli hypothetical protein TR:O52671 (EMBL:AF044503) (172 aa) fasta scores: E(): 0%2C80.2%25 id in 172 aa%2C and to Vibrio cholerae secreted hydrophilic protein Hcp or HcpA or VCA0017 or VC1415 TR:P72350 (EMBL:S81006) (172 aa) fasta scores: E(): 0%2C77.3%25 id in 172 aa gene gene3654 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3708 YPO3709 YPO3709 YPO3709 4142670 4143008 - hypothetical protein no significant database hits gene gene3655 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3709 YPO3710 YPO3710 malM malM 4143419 4144348 - maltose operon periplasmic protein Similar to Escherichia coli maltose operon periplasmic protein precursor MalM or MolA SW:MALM_ECOLI (P03841) (306 aa) fasta scores: E(): 0%2C 51.9%25 id in 308 aa%2Cand to Salmonella typhimurium maltose operon periplasmic protein precursor MalM SW:MALM_SALTY (P26478) (305 aa) fasta scores: E(): 0%2C 51.1%25 id in 307 aa gene gene3656 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3710 YPO3711 YPO3711 lamB lamB 4144571 4145842 - maltoporin Similar to Escherichia coli maltoporin precursor LamB or MalB SW:LAMB_ECOLI (P02943) (446 aa) fasta scores: E(): 0%2C 72.4%25 id in 446 aa%2C and to Yersinia enterocolitica maltoporin LamB SW:LAMB_YEREN (Q56850) (400 aa) fasta scores: E(): 0%2C 87.7%25 id in 399 aa gene gene3657 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3711 YPO3712 YPO3712 malK malK 4145913 4147022 - maltose/maltodextrin transport ATP-binding protein Similar to Escherichia coli maltose/maltodextrin transport ATP-binding protein MalK SW:MALK_ECOLI (P02914) (371 aa) fasta scores: E(): 0%2C 84.6%25 id in 371 aa%2C and to Salmonella typhimurium maltose/maltodextrin transport ATP-binding protein MalK SW:MALK_SALTY (P19566) (369 aa) fasta scores: E(): 0%2C 84.3%25 id in 369 aa. Similar to YPO0857 (52.7%25 identity in 357 aa overlap)%2C YPO3793 (47.5%25 identity in 358 aa overlap)%2C YPO1896 (59.6%25 identity in 275 aa overlap)%2C YPO0609 (47.7%25 identity in 369 aa overlap)%2CYPO3469 ( 49.9%25 identity in 357 aa overlap) gene gene3658 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3712 YPO3713 YPO3713 YPO3713 4147026 4147262 - hypothetical protein no significant database hits gene gene3659 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3713 YPO3714 YPO3714 malE malE 4147824 4149035 + maltose-binding periplasmic protein precursor Similar to Escherichia coli maltose-binding periplasmic protein precursor MalE SW:MALE_ECOLI (P02928) (396 aa) fasta scores: E(): 0%2C 84.6%25 id in 390 aa%2C and to Salmonella typhimurium maltose-binding periplasmic protein precursor MalE SW:MALE_SALTY (P19576) (396 aa) fasta scores: E(): 0%2C 83.4%25 id in 397 aa gene gene3660 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3714 YPO3715 YPO3715 malF malF 4149222 4150799 + maltose transport system permease protein MalF Similar to Escherichia coli maltose transport system permease protein MalF SW:MALF_ECOLI (P02916) (514 aa) fasta scores: E(): 0%2C 75.4%25 id in 513 aa%2C and to Enterobacter aerogenes maltose transport system permease protein MalF SW:MALF_ENTAE (P18812) (514 aa) fasta scores: E(): 0%2C 75.2%25 id in 513 aa gene gene3661 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3715 YPO3716 YPO3716 malG malG 4150813 4151703 + maltose transport system permease protein MalG Similar to Escherichia coli maltose transport system permease protein MalG SW:MALG_ECOLI (P07622) (296 aa) fasta scores: E(): 0%2C 88.2%25 id in 296 aa%2C and to Salmonella typhimurium maltose transport system permease protein MalG SW:MALG_SALTY (P26468) (296 aa) fasta scores: E(): 0%2C 90.9%25 id in 296 aa gene gene3662 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3716 YPO3717 YPO3717 yjbA yjbA 4151846 4152253 - putative membrane protein Similar to Escherichia coli hypothetical 15.6 kDa protein in pgi-xylE intergenic region YjbA SW:YJBA_ECOLI (P23896) (136 aa) fasta scores: E(): 0%2C 67.7%25 id in 130 aa%2Cand to Salmonella typhimurium Mig-7 TR:O30901 (EMBL:AF020807) (136 aa) fasta scores: E(): 0%2C 66.4%25 id in 131 aa gene gene3663 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3717 YPO3718 YPO3718 pgi pgi 4152388 4154034 - glucose-6-phosphate isomerase Similar to Escherichia coli glucose-6-phosphate isomerase Pgi SW:G6PI_ECOLI (P11537) (549 aa) fasta scores: E(): 0%2C 87.2%25 id in 548 aa%2C and to Vibrio cholerae glucose-6-phosphate isomerase Vc0374 TR:Q9KUY4 (EMBL:AE004125) (550 aa) fasta scores: E(): 0%2C 76.5%25 id in 548 aa gene gene3664 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3718 YPO3719 YPO3719 apk apk 4154404 4155789 + lysine-sensitive aspartokinase III Similar to Escherichia coli lysine-sensitive aspartokinase III LysC or Apk SW:AK3_ECOLI (P08660) (449 aa) fasta scores: E(): 0%2C 81.5%25 id in 448 aa%2C and to Vibrio cholerae aspartokinase III%2C lysine-sensitive Vc0391 TR:Q9KUW8 (EMBL:AE004127) (479 aa) fasta scores: E(): 0%2C55.2%25 id in 453 aa gene gene3665 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3719 YPO3720 YPO3720 hpmB hpmB 4156357 4158042 + hemolysin activator protein Similar to Serratia marcescens hemolysin activator protein precursor ShlB SW:HLYB_SERMA (P15321) (557 aa) fasta scores: E(): 0%2C 54.2%25 id in 565 aa%2C and to Proteus mirabilis hemolysin activator protein precursor HpmB SW:HLYB_PROMI (P16465) (561 aa) fasta scores: E(): 0%2C 49.0%25 id in 571 aa gene gene3666 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3720 YPO3721 YPO3721 YPO3721 4158112 4163019 + hemolysin Similar to Serratia marcescens hemolysin precursor ShlA SW:HLYA_SERMA (P15320) (1608 aa) fasta scores: E(): 0%2C42.5%25 id in 1657 aa%2C and to Edwardsiella tarda hemolysin EthA TR:O32608 (EMBL:D89876) (1594 aa) fasta scores: E(): 0%2C 36.4%25 id in 1660 aa gene gene3667 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3721 YPO3722 YPO3722 metH metH 4163115 4166810 - 5-Methyltetrahydrofolate--homocysteine methyltransferase Similar to Escherichia coli 5-methyltetrahydrofolate--homocysteine methyltransferase MetH SW:METH_ECOLI (P13009) (1226 aa) fasta scores: E(): 0%2C86.0%25 id in 1225 aa%2C and to Vibrio cholerae 5-methyltetrahydrofolate--homocysteine methyltransferase VC0390 TR:Q9KUW9 (EMBL:AE004127) (1226 aa) fasta scores: E(): 0%2C 75.9%25 id in 1218 aa gene gene3668 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3722 YPO3723 YPO3723 iclR iclR 4167025 4167869 + acetate operon repressor (pseudogene) Similar to Escherichia coli acetate operon repressor IclR SW:ICLR_ECOLI (P16528) (274 aa) fasta scores: E(): 0%2C78.5%25 id in 275 aa%2C and to Salmonella typhimurium acetate operon repressor IclR SW:ICLR_SALTY (P17430) (274 aa) fasta scores: E(): 0%2C 74.9%25 id in 275 aa. There is a frameshift following codon 89. The frameshift occurs within tracts of 5C and 5G. The sequence has been checked and is believed to be correct pseudogene gene3669 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3723 YPO3724 YPO3724 aceK aceK 4167989 4169716 - isocitrate dehydrogenase kinase/phosphatase Similar to Escherichia coli isocitrate dehydrogenase kinase/phosphatase AceK SW:ACEK_ECOLI (P11071) (578 aa) fasta scores: E(): 0%2C 75.5%25 id in 568 aa%2C and to Salmonella typhimurium isocitrate dehydrogenase kinase/phosphatase AceK SW:ACEK_SALTY (P51067) (583 aa) fasta scores: E(): 0%2C75.2%25 id in 568 aa gene gene3670 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3724 YPO3725 YPO3725 aceA aceA 4169972 4171279 - isocitrate lyase Similar to Escherichia coli isocitrate lyase AceA or Icl SW:ACEA_ECOLI (P05313) (434 aa) fasta scores: E(): 0%2C85.2%25 id in 432 aa%2C and to Vibrio cholerae isocitrate lyase Vc0736 TR:Q9KTZ4 (EMBL:AE004159) (437 aa) fasta scores: E(): 0%2C 76.8%25 id in 436 aa gene gene3671 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3725 YPO3726 YPO3726 aceB aceB 4171326 4172924 - malate synthase A Similar to Escherichia coli malate synthase A AceB or Mas SW:MASY_ECOLI (P08997) (533 aa) fasta scores: E(): 0%2C 79.5%25 id in 533 aa%2C and to Vibrio cholerae malate synthase Vc0734 TR:Q9KTZ6 (EMBL:AE004159) (556 aa) fasta scores: E(): 0%2C 71.4%25 id in 524 aa gene gene3672 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3726 YPO3727 YPO3727 metA metA 4173345 4174274 - homoserine O-succinyltransferase Similar to Escherichia coli homoserine O-succinyltransferase MetA SW:META_ECOLI (P07623) (309 aa) fasta scores: E(): 0%2C 79.3%25 id in 309 aa%2C and to Vibrio cholerae homoserine O-succinyltransferase MetA or Vc1611 TR:Q9KRM5 (EMBL:AE004238) (319 aa) fasta scores: E(): 0%2C68.5%25 id in 305 aa gene gene3673 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3727 YPO3728 YPO3728 purH purH 4181118 4182707 + bifunctional purine biosynthesis protein PurH [includes: phosphoribosylaminoimidazolecarboxamide formyltransferase and IMP cyclohydrolase Similar to Escherichia coli bifunctional purine biosynthesis protein PurH SW:PUR9_ECOLI (P15639) (529 aa) fasta scores: E(): 0%2C 87.1%25 id in 529 aa%2C and to Salmonella typhimurium bifunctional purine biosynthesis protein PurH SW:PUR9_SALTY (P26978) (508 aa) fasta scores: E(): 0%2C 86.8%25 id in 508 aa gene gene3678 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3728 YPO3729 YPO3729 purD purD 4182767 4184053 + phosphoribosylamine--glycine ligase Similar to Escherichia coli phosphoribosylamine--glycine ligase PurD SW:PUR2_ECOLI (P15640) (429 aa) fasta scores: E(): 0%2C 80.8%25 id in 426 aa%2Cand to Salmonella typhimurium phosphoribosylamine--glycine ligase PurD or Stmf1.31 SW:PUR2_SALTY (P26977) (429 aa) fasta scores: E(): 0%2C 79.6%25 id in 426 aa gene gene3679 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3729 YPO3730 YPO3730 yjaH yjaH 4184201 4184902 - putative exported protein Similar to Escherichia coli hypothetical 26.3 kDa protein in hupA-hydH intergenic region YjaH SW:YJAH_ECOLI (P32681) (231 aa) fasta scores: E(): 7.8e-32%2C 40.9%25 id in 225 aa%2C and to Salmonella typhimurium LT2 YjaH protein TR:Q9L9I1 (EMBL:AF170176) (230 aa) fasta scores: E(): 0%2C42.0%25 id in 226 aa gene gene3680 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3730 YPO3731 YPO3731 hupA hupA 4184904 4185179 - DNA-binding protein HU-alpha Similar to Escherichia coli DNA-binding protein HU-alpha HupA SW:DBHA_ECOLI (P02342) (90 aa) fasta scores: E(): 3.5e-29%2C 94.4%25 id in 90 aa%2C and to Salmonella typhimurium DNA-binding protein HU-alpha HupA or Stmf1.24 SW:DBHA_SALTY (P15148) (90 aa) fasta scores: E(): 1.4e-29%2C95.6%25 id in 90 aa. Similar to YPO3154 (65.2%25 identity in 89 aa overlap) gene gene3681 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3731 YPO3732 YPO3732 YPO3732 4185368 4185958 - conserved hypothetical protein Similar to Escherichia coli hypothetical protein YjaG SW:YJAG_ECOLI (P32680) (196 aa) fasta scores: E(): 0%2C78.6%25 id in 196 aa%2C and to Salmonella typhimurium LT2 YjaG protein TR:Q9L9I2 (EMBL:AF170176) (196 aa) fasta scores: E(): 0%2C 80.1%25 id in 196 aa gene gene3682 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3732 YPO3733 YPO3733 nfi nfi 4186004 4186708 - endonuclease V Similar to Escherichia coli endonuclease V Nfi SW:NFI_ECOLI (P32679) (223 aa) fasta scores: E(): 0%2C 69.4%25 id in 222 aa%2C and to Salmonella typhimurium LT2 Nfi protein TR:Q9L9I3 (EMBL:AF170176) (223 aa) fasta scores: E(): 0%2C71.0%25 id in 217 aa gene gene3683 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3733 YPO3734 YPO3734 hemE hemE 4186774 4187841 - uroporphyrinogen decarboxylase Similar to Escherichia coli uroporphyrinogen decarboxylase HemE SW:DCUP_ECOLI (P29680) (354 aa) fasta scores: E(): 0%2C 88.4%25 id in 354 aa%2C and to Salmonella typhimurium LT2 HemE protein TR:Q9L9I4 (EMBL:AF170176) (354 aa) fasta scores: E(): 0%2C 89.8%25 id in 353 aa gene gene3684 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3734 YPO3735 YPO3735 YPO3735 4187960 4188745 - hypothetical protein no significant database hits gene gene3685 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3735 YPO3736 YPO3736 YPO3736 4188838 4189620 - conserved hypothetical protein Similar to Escherichia coli hypothetical protein YjaD SW:YJAD_ECOLI (P32664) (257 aa) fasta scores: E(): 0%2C76.7%25 id in 245 aa%2C and to Salmonella typhimurium hypothetical protein YjaD or STMF1.20 TR:Q9L9I5 (EMBL:AF170176) (257 aa) fasta scores: E(): 0%2C 77.5%25 id in 249 aa gene gene3686 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3736 YPO3737 YPO3737 rsd rsd 4189717 4190226 + regulator of sigma D Similar to Escherichia coli regulator of sigma D Rsd SW:RSD_ECOLI (P31690) (158 aa) fasta scores: E(): 7.5e-31%2C55.8%25 id in 147 aa%2C and to Salmonella typhimurium LT2 Rsd protein TR:Q9L9I6 (EMBL:AF170176) (162 aa) fasta scores: E(): 3.1e-32%2C 57.1%25 id in 147 aa gene gene3687 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3737 YPO3738 YPO3738 YPO3738 4190349 4190609 + hypothetical protein no significant database hits gene gene3688 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3738 YPO3739 YPO3739 thiC thiC 4190602 4192647 + thiamine biosynthesis protein ThiC Similar to Escherichia coli thiamine biosynthesis protein ThiC SW:THIC_ECOLI (P30136) (631 aa) fasta scores: E(): 0%2C 83.6%25 id in 646 aa%2C and to Salmonella typhimurium LT2 ThiC protein TR:Q9L9I7 (EMBL:AF170176) (631 aa) fasta scores: E(): 0%2C 81.7%25 id in 644 aa gene gene3689 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3739 YPO3740 YPO3740 thiE thiE 4192661 4193308 + thiamine-phosphate pyrophosphorylase Similar to Escherichia coli thiamine-phosphate pyrophosphorylase ThiE SW:THIE_ECOLI (P30137) (211 aa) fasta scores: E(): 0%2C 71.3%25 id in 202 aa%2C and to Salmonella typhimurium LT2 ThiF protein TR:Q9L9I8 (EMBL:AF170176) (211 aa) fasta scores: E(): 0%2C 71.0%25 id in 200 aa gene gene3690 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3740 YPO3741 YPO3741 thiF thiF 4193298 4194095 + thiamine biosynthesis protein ThiF Similar to Escherichia coli ThiF protein SW:THIF_ECOLI (P30138) (251 aa) fasta scores: E(): 0%2C 61.1%25 id in 257 aa%2C and to Salmonella typhimurium LT2 ThiF protein TR:Q9L9I9 (EMBL:AF170176) (252 aa) fasta scores: E(): 0%2C 60.3%25 id in 257 aa gene gene3691 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3741 YPO3742 YPO3742 thiG thiG 4194123 4195124 + thiamine biosynthesis protein ThiG Similar to Escherichia coli ThiG protein SW:THIG_ECOLI (P30139) (281 aa) fasta scores: E(): 0%2C 70.1%25 id in 284 aa%2C and to Vibrio cholerae ThiG protein Vc0065 TR:Q9KVS4 (EMBL:AE004097) (256 aa) fasta scores: E(): 0%2C68.3%25 id in 262 aa gene gene3692 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3742 YPO3743 YPO3743 thiH thiH 4195117 4196247 + thiamine biosynthesis protein ThiH Similar to Escherichia coli ThiH protein SW:THIH_ECOLI (P30140) (377 aa) fasta scores: E(): 0%2C 79.7%25 id in 370 aa%2C and to Salmonella typhimurium and S. typhimurium LT2 ThiH TR:Q9S498 (EMBL:AF154064) (377 aa) fasta scores: E(): 0%2C 78.6%25 id in 370 aa gene gene3693 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3743 YPO3744 YPO3744 YPO3744 4196290 4196403 - hypothetical protein no significant database hits gene gene3694 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3744 YPO3745 YPO3745 tnp tnp 4196679 4197137 + transposase for the IS1541 insertion element Similar to Salmonella typhimurium%2C and Salmonella typhi transposase for insertion sequence IS200 TnpA SW:T200_SALTY (Q57334) (152 aa) fasta scores: E(): 0%2C 94.1%25 id in 152 aa. Identical to the Yersinia pseudotuberculosis IS1541-like element transposase Tnp TR:Q9X9F5 (EMBL:AJ238014) (152 aa) fasta scores: E(): 0%2C 100.0%25 id in 152 aa gene gene3695 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3745 YPO3746 YPO3746 rpoC rpoC 4197264 4201484 - DNA-directed RNA polymerase beta' chain Similar to Escherichia coli DNA-directed RNA polymerase beta' chain RpoC or TabB SW:RPOC_ECOLI (P00577) (1407 aa) fasta scores: E(): 0%2C 92.8%25 id in 1404 aa%2C and to Salmonella typhimurium LT2 RpoC protein TR:Q9L9J7 (EMBL:AF170176) (1407 aa) fasta scores: E(): 0%2C 92.8%25 id in 1404 aa gene gene3696 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3746 YPO3747 YPO3747 groN groN 4201613 4205641 - DNA-directed RNA polymerase beta chain Similar to Escherichia coli DNA-directed RNA polymerase beta chain RpoB or GroN or NitB or Rif or Ron or Stl or Stv or TabD SW:RPOB_ECOLI (P00575) (1342 aa) fasta scores: E(): 0%2C 94.6%25 id in 1342 aa%2C and to Salmonella typhimurium DNA-directed RNA polymerase beta chain RpoB SW:RPOB_SALTY (P06173) (1342 aa) fasta scores: E(): 0%2C95.2%25 id in 1342 aa gene gene3697 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3747 YPO3748 YPO3748 rplL rplL 4205984 4206352 - 50S ribosomal protein L7/L12 Similar to Escherichia coli 50S ribosomal protein L7/L12 RplL SW:RL7_ECOLI (P02392) (120 aa) fasta scores: E(): 4.9e-27%2C 79.2%25 id in 120 aa%2C and to Salmonella typhimurium 50S ribosomal protein L7/L12 RplL SW:RL7_SALTY (P18081) (120 aa) fasta scores: E(): 7.4e-27%2C 79.7%25 id in 123 aa gene gene3698 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3748 YPO3749 YPO3749 rplJ rplJ 4206419 4206916 - 50S ribosomal protein L10 Similar to Escherichia coli 50S ribosomal protein L10 RplJ SW:RL10_ECOLI (P02408) (164 aa) fasta scores: E(): 0%2C 90.2%25 id in 164 aa%2C and to Salmonella typhimurium 50S ribosomal protein L10 RplJ SW:RL10_SALTY (P17352) (164 aa) fasta scores: E(): 0%2C 90.2%25 id in 164 aa gene gene3699 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3749 YPO3750 YPO3750 rplA rplA 4207281 4207985 - 50S ribosomal protein L1 Similar to Escherichia coli 50S ribosomal protein L1 RplA SW:RL1_ECOLI (P02384) (233 aa) fasta scores: E(): 0%2C91.8%25 id in 233 aa%2C and to Serratia marcescens 50S ribosomal protein L1 RplA SW:RL1_SERMA (P09764) (233 aa) fasta scores: E(): 0%2C 92.3%25 id in 233 aa gene gene3700 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3750 YPO3751 YPO3751 relC relC 4207989 4208417 - 50S ribosomal protein L11 Similar to Escherichia coli 50S ribosomal protein L11 RplK or RelC SW:RL11_ECOLI (P02409) (141 aa) fasta scores: E(): 0%2C 90.0%25 id in 140 aa%2C and to Serratia marcescens 50S ribosomal protein L11 RplK SW:RL11_SERMA (P09763) (141 aa) fasta scores: E(): 0%2C 95.7%25 id in 140 aa gene gene3701 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3751 YPO3752 YPO3752 nusG nusG 4208608 4209153 - transcription antitermination protein Similar to Escherichia coli transcription antitermination protein NusG SW:NUSG_ECOLI (P16921) (181 aa) fasta scores: E(): 0%2C 97.2%25 id in 180 aa%2C and to Salmonella typhimurium LT2 transcription antitermination protein NusG TR:Q9L9K0 (EMBL:AF170176) (181 aa) fasta scores: E(): 0%2C 97.8%25 id in 180 aa gene gene3702 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3752 YPO3753 YPO3753 prlG prlG 4209155 4209538 - preprotein translocase SecE subunit Similar to Escherichia coli preprotein translocase SecE subunit or PrlG SW:SECE_ECOLI (P16920) (127 aa) fasta scores: E(): 0%2C 85.8%25 id in 127 aa%2C and to Salmonella typhimurium LT2 SecE protein TR:Q9L9K1 (EMBL:AF170176) (127 aa) fasta scores: E(): 0%2C 86.6%25 id in 127 aa gene gene3703 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3753 YPO3754 YPO3754 tufA tufA 4209789 4210973 - elongation factor Tu Similar to Escherichia coli elongation factor Tu%2CTufA and TufB SW:EFTU_ECOLI (P02990) (393 aa) fasta scores: E(): 0%2C 93.6%25 id in 392 aa%2C and to Salmonella typhimurium elongation factor Tu%2C TufA and TufB SW:EFTU_SALTY (P21694) (393 aa) fasta scores: E(): 0%2C 93.9%25 id in 392 aa. Similar to YPO0203 (94.4%25 identity in 393 aa overlap) gene gene3704 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3754 YPO3755 YPO3755 ypmt1.57c ypmt1.57c 4212030 4212812 - insertion sequence IS100%2C ATP-binding protein Similar to Escherichia coli insertion sequence IS21 putative ATP-binding protein%2C IstB SW:ISTB_ECOLI (P15026) (265 aa) fasta scores: E(): 0%2C 47.4%25 id in 249 aa. Also almost identical to Yersinia pestis and Escherichia coli putative IS100 transposase ypmt1.57c TR:Q9R3L5 (EMBL:AL117211) (260 aa) fasta scores: E(): 0%2C 99.6%25 id in 260 aa. gene gene3705 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3755 YPO3756 YPO3756 y1093 y1093 4212809 4213831 - transposase for insertion sequence IS100 Similar to Escherichia coli transposase for insertion sequence element IS21 IstA SW:ISTA_ECOLI (P15025) (390 aa) fasta scores: E(): 3e-27%2C 33.1%25 id in 329 aa. Identical to the previously sequenced Yersinia pestis%2CYersinia pseudotuberculosis%2C and Escherichia coli pesticin plasmid insertion sequence transposase Y1055 TR:P74993 (EMBL:U59875) (340 aa) fasta scores: E(): 0%2C 100.0%25 id in 340 aa gene gene3706 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3756 YPO3757 YPO3757 YPO3757 4213921 4214472 + putative acetyltransferase Similar to Pseudomonas syringae acetyltransferase Ttr SW:TTR_PSESY (P16966) (177 aa) fasta scores: E(): 2.5e-29%2C 47.6%25 id in 166 aa%2C and to Streptomyces coelicolor putative acetyltransferase Sc1a2.12 TR:Q9L229 (EMBL:AL138598) (181 aa) fasta scores: E(): 2e-21%2C 40.9%25 id in 164 aa gene gene3707 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3757 YPO3758 YPO3758 coaA coaA 4214683 4215633 + pantothenate kinase Similar to Escherichia coli pantothenate kinase CoaA or Rts or PanK SW:COAA_ECOLI (P15044) (316 aa) fasta scores: E(): 0%2C 85.8%25 id in 316 aa%2C and to Salmonella typhimurium pantothenate kinase CoaA SW:COAA_SALTY (Q9L9K3) (316 aa) fasta scores: E(): 0%2C 85.8%25 id in 316 aa gene gene3708 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3758 YPO3759 YPO3759 bioR bioR 4215668 4216627 - bifunctional protein BirA Similar to Escherichia coli BirA bifunctional protein%2C includes: biotin operon repressor%3B biotin--[acetyl-CoA-carboxylase] synthetase%2C BirA or BioR or DhbB SW:BIRA_ECOLI (P06709) (321 aa) fasta scores: E(): 0%2C 75.4%25 id in 317 aa%2C and to Salmonella typhimurium LT2 bifunctional protein BirA TR:Q9L9K4 (EMBL:AF170176) (320 aa) fasta scores: E(): 0%2C 76.7%25 id in 317 aa gene gene3709 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3759 YPO3760 YPO3760 murB murB 4216624 4217661 - UDP-N-acetylenolpyruvoylglucosamine reductase Similar to Escherichia coli UDP-N-acetylenolpyruvoylglucosamine reductase MurB SW:MURB_ECOLI (P08373) (342 aa) fasta scores: E(): 0%2C 61.9%25 id in 339 aa%2C and to Salmonella typhimurium UDP-N-acetylenolpyruvoylglucosamine reductase MurB or Stmf1.1 SW:MURB_SALTY (P37417) (342 aa) fasta scores: E(): 0%2C 62.5%25 id in 339 aa gene gene3710 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3760 YPO3761 YPO3761 hemG hemG 4223798 4224331 - protoporphyrinogen oxidase Similar to Escherichia coli protoporphyrinogen oxidase HemG SW:HEMG_ECOLI (P27863) (181 aa) fasta scores: E(): 0%2C 57.2%25 id in 180 aa%2C and to Salmonella typhimurium LT2 HemG protein TR:Q9L6L1 (EMBL:AF233324) (181 aa) fasta scores: E(): 0%2C 54.8%25 id in 177 aa gene gene3714 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3761 YPO3762 YPO3762 trkH trkH 4224353 4225804 - Trk system potassium uptake protein TrkH Similar to Escherichia coli Trk system potassium uptake protein TrkH SW:TRKH_ECOLI (P21166) (483 aa) fasta scores: E(): 0%2C 88.6%25 id in 483 aa%2C and to Salmonella typhimurium LT2 TrkH protein TR:Q9L6L2 (EMBL:AF233324) (483 aa) fasta scores: E(): 0%2C 88.2%25 id in 483 aa gene gene3715 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3762 YPO3763 YPO3763 YPO3763 4225844 4226284 - conserved hypothetical protein (pseudogene) This CDS is disrupted by the insertion of IS1541. The full length CDS is similar to Escherichia coli hypothetical 21.9 kDa protein in pepQ-trkH intergenic region YigZ SW:YIGZ_ECOLI (P27862) (205 aa) fasta scores: E(): 0%2C 63.9%25 id in 202 aa%2C and to Salmonella typhimurium LT2 YigZ protein TR:Q9L6L3 (EMBL:AF233324) (204 aa) fasta scores: E(): 0%2C 64.4%25 id in 202 aa pseudogene gene3716 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3763 YPO3764 YPO3764 tnp tnp 4226393 4226851 - transposase for the IS1541 insertion element Similar to Salmonella typhimurium and Salmonella typhi transposase for insertion sequence IS200%2C TnpA%2CSW:TNPA_SALTY (Q57334) (152 aa) fasta scores: E(): 0%2C 93.4%25 id in 152 aa. Almost identical to the Yersinia pseudotuberculosis IS1541-like element transposase Tnp TR:Q9X9F5 (EMBL:AJ238014) (152 aa) fasta scores: E(): 0%2C99.3%25 id in 152 aa gene gene3717 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3764 YPO3765 YPO3765 pepQ pepQ 4227165 4228496 - proline dipeptidase Similar to Escherichia coli proline dipeptidase PepQ SW:PEPQ_ECOLI (P21165) (443 aa) fasta scores: E(): 0%2C 73.6%25 id in 443 aa%2C and to Salmonella typhimurium LT2 PepQ protein TR:Q9L6L4 (EMBL:AF233324) (443 aa) fasta scores: E(): 0%2C 74.7%25 id in 443 aa gene gene3718 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3765 YPO3766 YPO3766 fadB fadB 4228823 4231012 + fatty acid oxidation complex alpha subunit Similar to Escherichia coli fatty acid oxidation complex alpha subunit FadB or OldB SW:FADB_ECOLI (P21177) (729 aa) fasta scores: E(): 0%2C 77.3%25 id in 715 aa%2C and to Salmonella typhimurium LT2 FadB protein TR:Q9L6L5 (EMBL:AF233324) (729 aa) fasta scores: E(): 0%2C 77.3%25 id in 715 aa gene gene3719 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3766 YPO3767 YPO3767 fadA fadA 4231024 4232187 + 3-ketoacyl-CoA thiolase Similar to Escherichia coli 3-ketoacyl-CoA thiolase FadA or OldA SW:THIK_ECOLI (P21151) (387 aa) fasta scores: E(): 0%2C 80.4%25 id in 387 aa%2C and to Salmonella typhimurium LT2 FadA protein TR:Q9L6L6 (EMBL:AF233324) (387 aa) fasta scores: E(): 0%2C 79.8%25 id in 387 aa gene gene3720 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3767 YPO3768 YPO3768 fadI fadI 4232347 4233048 - NAD(P)H-flavin reductase Similar to Escherichia coli NAD(P)H-flavin reductase Fre or FlrD or FadI or FsrC or UbiB SW:FRE_ECOLI (P23486) (232 aa) fasta scores: E(): 0%2C 77.6%25 id in 232 aa%2C and to Salmonella typhimurium LT2 UbiB protein TR:Q9L6L9 (EMBL:AF233324) (233 aa) fasta scores: E(): 0%2C 79.4%25 id in 233 aa gene gene3721 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3768 YPO3769 YPO3769 YPO3769 4233103 4234599 - conserved hypothetical protein Similar to Escherichia coli hypothetical protein YigC SW:YIGC_ECOLI (P26615) (497 aa) fasta scores: E(): 0%2C89.0%25 id in 493 aa%2C and to Salmonella typhimurium LT2 YigC protein TR:Q9L6M0 (EMBL:AF233324) (492 aa) fasta scores: E(): 0%2C 87.8%25 id in 491 aa gene gene3722 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3769 YPO3770 YPO3770 hlyT hlyT 4234847 4235335 + putative regulatory protein Similar to Escherichia coli transcriptional activator RfaH or HlyT or SfrB SW:RFAH_ECOLI (P26614) (162 aa) fasta scores: E(): 0%2C 64.0%25 id in 161 aa%2C and to Erwinia chrysanthemi transcriptional activator RfaH TR:Q9ZEL8 (EMBL:AJ132239) (162 aa) fasta scores: E(): 0%2C70.2%25 id in 161 aa gene gene3723 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3770 YPO3771 YPO3771 hemB hemB 4235445 4236467 - delta-aminolevulinic acid dehydratase Similar to Pseudomonas aeruginosa delta-aminolevulinic acid dehydratase HemB or Pa5243 SW:HEM2_PSEAE (Q59643) (337 aa) fasta scores: E(): 0%2C 69.8%25 id in 325 aa%2C and to Vibrio cholerae delta-aminolevulinic acid dehydratase HemB or Vc0105 TR:Q9KVN6 (EMBL:AE004101) (347 aa) fasta scores: E(): 0%2C 71.7%25 id in 339 aa gene gene3724 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3771 YPO3773 YPO3773 ypmt1.57c ypmt1.57c 4236856 4237638 - insertion sequence IS100%2C ATP-binding protein Similar to Escherichia coli insertion sequence IS21 putative ATP-binding protein%2C IstB SW:ISTB_ECOLI (P15026) (265 aa) fasta scores: E(): 0%2C 47.4%25 id in 249 aa. Also almost identical to Yersinia pestis and Escherichia coli putative IS100 transposase ypmt1.57c TR:Q9R3L5 (EMBL:AL117211) (260 aa) fasta scores: E(): 0%2C 99.6%25 id in 260 aa. gene gene3726 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3773 YPO3774 YPO3774 y1093 y1093 4237635 4238657 - transposase for insertion sequence IS100 Similar to Escherichia coli transposase for insertion sequence element IS21 IstA SW:ISTA_ECOLI (P15025) (390 aa) fasta scores: E(): 3e-27%2C 33.1%25 id in 329 aa. Identical to the previously sequenced Yersinia pestis%2CYersinia pseudotuberculosis%2C and Escherichia coli pesticin plasmid insertion sequence transposase Y1055 TR:P74993 (EMBL:U59875) (340 aa) fasta scores: E(): 0%2C 100.0%25 id in 340 aa gene gene3727 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3774 YPO3775 YPO3775 mttC mttC 4236482 4236784 - deoxyribonuclease TatD (pseudogene) This CDS is disrupted by the insertion of IS100. The full length CDS is similar to Escherichia coli deoxyribonuclease TatD or MttC or B3840/B3841 SW:TATD_ECOLI (P27859) (264 aa) fasta scores: E(): 0%2C 66.1%25 id in 257 aa pseudogene gene3725 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3775 YPO3776 YPO3776 mttB mttB 4239279 4240055 - Sec-independent protein translocase protein TatC Similar to Escherichia coli Sec-independent protein translocase protein TatC or MttB SW:TATC_ECOLI (P27857) (258 aa) fasta scores: E(): 0%2C 78.3%25 id in 253 aa%2C and to Salmonella typhimurium LT2 TatC protein TR:Q9L6M3 (EMBL:AF233324) (259 aa) fasta scores: E(): 0%2C 77.1%25 id in 249 aa gene gene3728 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3776 YPO3777 YPO3777 mtta2 mtta2 4240058 4240720 - Sec-independent protein translocase protein TatB Similar to Escherichia coli Sec-independent protein translocase protein TatB or Mtta2 SW:TATB_ECOLI (O69415) (171 aa) fasta scores: E(): 7e-30%2C 64.1%25 id in 167 aa%2C and to Salmonella typhimurium Sec-independent protein translocase protein TatB or Stmd1.15 SW:TATB_SALTY (P57048) (182 aa) fasta scores: E(): 1.2e-29%2C 60.6%25 id in 180 aa gene gene3729 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3777 YPO3778 YPO3778 b3836 b3836 4240724 4240990 - Sec-independent protein translocase protein TatA Similar to Escherichia coli Sec-independent protein translocase protein TatA or Mtta1 or b3836 SW:TATA_ECOLI (O65938) (89 aa) fasta scores: E(): 2.9e-15%2C 65.2%25 id in 92 aa%2C and to Salmonella typhimurium Sec-independent protein translocase protein TatA or Stmd1.16 SW:TATA_SALTY (P57045) (84 aa) fasta scores: E(): 4.5e-15%2C 65.9%25 id in 88 aa gene gene3730 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3778 YPO3779 YPO3779 aarF aarF 4241170 4242801 - ubiquinone biosynthesis protein Similar to Escherichia coli ubiquinone biosynthesis protein AarF SW:AARF_ECOLI (P27854) (546 aa) fasta scores: E(): 0%2C 80.7%25 id in 545 aa%2C and to Providencia stuartii ubiquinone biosynthesis protein AarF SW:AARF_PROST (O07443) (544 aa) fasta scores: E(): 0%2C 79.5%25 id in 542 aa gene gene3731 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3779 YPO3780 YPO3780 YPO3780 4242801 4243433 - conserved hypothetical protein Similar to Escherichia coli hypothetical protein YigP SW:YIGP_ECOLI (P27852) (201 aa) fasta scores: E(): 0%2C56.9%25 id in 197 aa%2C and to Salmonella typhimurium LT2 YigP protein TR:Q9L6M5 (EMBL:AF233324) (201 aa) fasta scores: E(): 0%2C 56.9%25 id in 197 aa gene gene3732 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3780 YPO3781 YPO3781 ubiE ubiE 4243465 4244220 - ubiquinone/menaquinone biosynthesis methyltransferase Similar to Escherichia coli ubiquinone/menaquinone biosynthesis methyltransferase UbiE SW:UBIE_ECOLI (P27851) (251 aa) fasta scores: E(): 0%2C 82.9%25 id in 251 aa%2C and to Salmonella typhimurium LT2 UbiE protein TR:Q9L6M6 (EMBL:AF233324) (251 aa) fasta scores: E(): 0%2C 83.7%25 id in 251 aa gene gene3733 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3781 YPO3782 YPO3782 rumC rumC 4244312 4245745 - putative DNA recombination protein Similar to Escherichia coli DNA recombination protein RumC TR:AAG17924 (EMBL:AF300647) (475 aa) fasta scores: E(): 0%2C 70.3%25 id in 431 aa%2C and to Salmonella typhimurium LT2 YigN protein TR:Q9L6M7 (EMBL:AF233324) (476 aa) fasta scores: E(): 0%2C 71.3%25 id in 428 aa gene gene3734 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3782 YPO3783 YPO3783 YPO3783 4246025 4246555 - putative membrane protein Similar to the N-terminal regions of Xylella fastidiosa hypothetical protein Xf0277 TR:Q9PGM1 (EMBL:AE003881) (709 aa) fasta scores: E(): 1.2e-17%2C 37.3%25 id in 158 aa%2C and to Escherichia coli hypothetical 28.2 kDa protein in araC-tbpA intergenic region yabI SW:YABI_ECOLI (P30149) (254 aa) fasta scores: E(): 1.3e-17%2C 37.3%25 id in 153 aa gene gene3735 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3783 YPO3784 YPO3784 YPO3784 4246827 4248644 - putative carbon starvation protein Similar to Escherichia coli carbon starvation protein A CstA SW:CSTA_ECOLI (P15078) (701 aa) fasta scores: E(): 0%2C 42.6%25 id in 570 aa%2C and to Bacillus subtilis carbon starvation protein A homolog CstA SW:CSTA_BACSU (P94532) (598 aa) fasta scores: E(): 0%2C 71.1%25 id in 591 aa gene gene3736 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3784 YPO3785 YPO3785 YPO3785 4249002 4249832 - conserved hypothetical protein Similar to Mycobacterium tuberculosis hypothetical protein RV0153c or MTCI5.27c TR:P96830 (EMBL:Z92770) (276 aa) fasta scores: E(): 1.8e-07%2C 26.2%25 id in 279 aa%2C and to Clostridium perfringens protein-tyrosine phosphatase Ptp TR:Q9XDU2 (EMBL:AB028630) (332 aa) fasta scores: E(): 2e-10%2C 31.4%25 id in 271 aa gene gene3737 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3785 YPO3786 YPO3786 udp udp 4249953 4250714 - uridine phosphorylase Similar to Escherichia coli uridine phosphorylase Udp SW:UDP_ECOLI (P12758) (252 aa) fasta scores: E(): 0%2C92.1%25 id in 252 aa%2C and identical to Yersinia pseudotuberculosis uridine phosphorylase Udp TR:Q9K4U2 (EMBL:AJ278525) (253 aa) fasta scores: E(): 0%2C 100.0%25 id in 253 aa gene gene3738 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3786 YPO3787 YPO3787 YPO3787 4251211 4252014 + putative carboxymethylenebutenolidase Similar to Pseudomonas putida%2C and Pseudomonas sp. (strain B13) carboxymethylenebutenolidase ClcD SW:CLCD_PSEPU (P11453) (236 aa) fasta scores: E(): 3.8e-13%2C31.0%25 id in 229 aa%2C and to Escherichia coli putative carboxymethylenebutenolidase YsgA SW:DLHH_ECOLI (P56262) (258 aa) fasta scores: E(): 0%2C 75.4%25 id in 236 aa%2C and to Salmonella typhimurium LT2 DlhH protein TR:Q9L6M9 (EMBL:AF233324) (270 aa) fasta scores: E(): 0%2C 74.1%25 id in 239 aa gene gene3739 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3787 YPO3788 YPO3788 metE metE 4252069 4254345 - 5-methyltetrahydropteroyltriglutamate--homocyste i ne methyltransferase Similar to Escherichia coli 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase MetE SW:METE_ECOLI (P25665) (752 aa) fasta scores: E(): 0%2C 85.0%25 id in 753 aa%2C and to Salmonella typhimurium 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase MetE or Stmd1.25 TR:Q9L6N1 (EMBL:AF233324) (754 aa) fasta scores: E(): 0%2C 82.7%25 id in 757 aa gene gene3740 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3788 YPO3789 YPO3789 metR metR 4254451 4255404 + lysR-family transcriptional regulatory protein Similar to Escherichia coli transcriptional activator protein MetR SW:METR_ECOLI (P19797) (317 aa) fasta scores: E(): 0%2C 88.2%25 id in 314 aa%2C and to Salmonella typhimurium transcriptional activator protein MetR SW:METR_SALTY (P05984) (317 aa) fasta scores: E(): 0%2C 83.9%25 id in 317 aa gene gene3741 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3789 YPO3790 YPO3790 yigM yigM 4255292 4256191 - putative membrane protein Similar to Escherichia coli hypothetical 32.4 kDa protein in pldB-metR intergenic region YigM SW:YIGM_ECOLI (P27849) (288 aa) fasta scores: E(): 0%2C 74.9%25 id in 275 aa%2Cand to Salmonella typhimurium LT2 YigM protein TR:Q9L6N3 (EMBL:AF233324) (299 aa) fasta scores: E(): 0%2C 73.4%25 id in 297 aa gene gene3742 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3790 YPO3791 YPO3791 YPO3791 4256573 4257499 - putative membrane protein Similar to Oenococcus oeni malate permease MleP TR:Q48797 (EMBL:X82326) (314 aa) fasta scores: E(): 5.7e-11%2C 23.5%25 id in 289 aa%2C and to Rhizobium meliloti putative malonate transporter mdcF SW:MDCF_RHIME (P56949) (320 aa) fasta scores: E(): 1.7e-13%2C 25.3%25 id in 288 aa gene gene3743 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3791 YPO3792 YPO3792 ugpQ ugpQ 4257600 4258349 - glycerophosphoryl diester phosphodiesterase Similar to Escherichia coli glycerophosphoryl diester phosphodiesterase UgpQ SW:UGPQ_ECOLI (P10908) (247 aa) fasta scores: E(): 0%2C 73.0%25 id in 244 aa%2C and to Alcaligenes eutrophus Orf1 TR:Q44028 (EMBL:X91877) (248 aa) fasta scores: E(): 0%2C 52.5%25 id in 236 aa gene gene3744 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3792 YPO3793 YPO3793 ugpC ugpC 4258346 4259419 - sn-glycerol-3-phosphate transport%2C ATP-binding protein Similar to Escherichia coli sn-glycerol-3-phosphate transport ATP-binding protein UgpC SW:UGPC_ECOLI (P10907) (356 aa) fasta scores: E(): 0%2C 75.8%25 id in 356 aa%2C and to Pseudomonas fluorescens probable mannitol transport ATP-binding protein MtlK TR:O30494 (EMBL:AF007800) (367 aa) fasta scores: E(): 0%2C 51.4%25 id in 356 aa gene gene3745 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3793 YPO3794 YPO3794 ugpE ugpE 4259426 4260271 - sn-glycerol-3-phosphate transport system%2Cpermease protein Similar to Escherichia coli sn-glycerol-3-phosphate transport system permease protein UgpE SW:UGPE_ECOLI (P10906) (281 aa) fasta scores: E(): 0%2C 77.6%25 id in 281 aa%2Cand to Vibrio cholerae glycerol-3-phosphate ABC transporter%2C permease protein Vc1551 TR:Q9KRT5 (EMBL:AE004233) (280 aa) fasta scores: E(): 0%2C 48.0%25 id in 273 aa gene gene3746 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3794 YPO3795 YPO3795 ugpA ugpA 4260268 4261155 - sn-glycerol-3-phosphate transport system%2Cpermease protein Similar to Escherichia coli sn-glycerol-3-phosphate transport system permease protein UgpA SW:UGPA_ECOLI (P10905) (295 aa) fasta scores: E(): 0%2C 79.3%25 id in 295 aa%2Cand to Vibrio cholerae glycerol-3-phosphate ABC transporter%2C permease protein Vc1550 TR:Q9KRT6 (EMBL:AE004233) (293 aa) fasta scores: E(): 0%2C 46.9%25 id in 290 aa gene gene3747 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3795 YPO3796 YPO3796 ugpB ugpB 4261453 4262772 - glycerol-3-phosphate-binding periplasmic protein Similar to Escherichia coli glycerol-3-phosphate-binding periplasmic protein precursor UgpB SW:UGPB_ECOLI (P10904) (438 aa) fasta scores: E(): 0%2C80.0%25 id in 434 aa%2C and to Vibrio cholerae glycerol-3-phosphate ABC transporter%2C periplasmic protein Vc1549 TR:Q9KRT7 (EMBL:AE004233) (434 aa) fasta scores: E(): 0%2C 40.7%25 id in 418 aa gene gene3748 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3796 YPO3797 YPO3797 YPO3797 4263327 4263818 + putative exported protein Similar to Escherichia coli colonization factor antigen 1 TR:AAB30543 (EMBL:S73191) (170 aa) fasta scores: E(): 0.69%2C 27.4%25 id in 168 aa%2C and to Salmonella typhi%2C and Salmonella enterica TsaB or TcfB TR:Q9XDS3 (EMBL:AB029403) (191 aa) fasta scores: E(): 1.9%2C 28.8%25 id in 118 aa gene gene3749 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3797 YPO3798 YPO3798 YPO3798 4264085 4266418 + putative exported protein Similar to Escherichia coli hypothetical 90.3 kDa protein precursor TR:O52984 (EMBL:AJ224079) (814 aa) fasta scores: E(): 0.00089%2C 21.8%25 id in 685 aa%2C and to Escherichia coli cfa/I fimbrial subunit C precursor CfaC SW:CFAC_ECOLI (P25733) (869 aa) fasta scores: E(): 0.043%2C22.0%25 id in 824 aa gene gene3750 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3798 YPO3799 YPO3799 YPO3799 4266436 4267122 + putative exported protein Similar to Escherichia coli CFA/I fimbrial subunit A precursor CfaA SW:CFAA_ECOLI (P25732) (206 aa) fasta scores: E(): 0.00026%2C 26.1%25 id in 153 aa%2C and to Escherichia coli Cs1 fimbrial subunit B precursor CsoB or CooB SW:CSOB_ECOLI (P25731) (238 aa) fasta scores: E(): 0.00087%2C 22.4%25 id in 219 aa gene gene3751 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3799 YPO3800 YPO3800 YPO3800 4267094 4267741 + putative exported protein Similar to Escherichia coli CFA/I fimbrial subunit A precursor CfaA SW:CFAA_ECOLI (P25732) (206 aa) fasta scores: E(): 0.00014%2C 28.0%25 id in 189 aa%2C and to Escherichia coli Cs1 fimbrial subunit B precursor CsoB or CooB SW:CSOB_ECOLI (P25731) (238 aa) fasta scores: E(): 0.0028%2C 26.6%25 id in 173 aa gene gene3752 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3800 YPO3801 YPO3801 YPO3801 4267803 4268321 + putative exported protein Similar to Escherichia coli colonization factor antigen 1 TR:AAB30543 (EMBL:S73191) (170 aa) fasta scores: E(): 3.6%2C 22.3%25 id in 175 aa%2C and to Escherichia coli CFA/I fimbrial subunit B precursor CfaB SW:FMC1_ECOLI (P02971) (170 aa) fasta scores: E(): 4.2%2C 22.3%25 id in 175 aa gene gene3753 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3801 YPO3802 YPO3802 YPO3802 4268434 4269540 + putative exported protein no significant database matches gene gene3754 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3802 YPO3803 YPO3803 YPO3803 4269655 4270116 - hypothetical protein no significant database hits gene gene3755 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3803 YPO3804 YPO3804 livF livF 4270344 4271045 - high-affinity branched-chain amino acid transport%2C ATP-binding protein Similar to Escherichia coli high-affinity branched-chain amino acid transport ATP-binding protein LivF SW:LIVF_ECOLI (P22731) (237 aa) fasta scores: E(): 0%2C87.1%25 id in 233 aa%2C and to Salmonella typhimurium high-affinity branched-chain amino acid transport ATP-binding protein LivF or LivG SW:LIVF_SALTY (P30294) (237 aa) fasta scores: E(): 0%2C 85.8%25 id in 233 aa gene gene3756 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3804 YPO3805 YPO3805 livG livG 4271090 4271857 - high-affinity branched-chain amino acid transport%2C ATP-binding protein Similar to Escherichia coli high-affinity branched-chain amino acid transport ATP-binding protein LivG SW:LIVG_ECOLI (P22730) (255 aa) fasta scores: E(): 0%2C82.1%25 id in 252 aa%2C and to Salmonella typhimurium high-affinity branched-chain amino acid transport ATP-binding protein LivG or LivF SW:LIVG_SALTY (P30293) (255 aa) fasta scores: E(): 0%2C 83.3%25 id in 252 aa gene gene3757 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3805 YPO3806 YPO3806 livM livM 4271854 4273140 - high-affinity branched-chain amino acid transport system%2C permease protein Similar to Escherichia coli high-affinity branched-chain amino acid transport system permease protein LivM SW:LIVM_ECOLI (P22729) (425 aa) fasta scores: E(): 0%2C79.4%25 id in 428 aa%2C and to Salmonella typhimurium high-affinity branched-chain amino acid transport system permease protein LivM or LivE SW:LIVM_SALTY (P30296) (425 aa) fasta scores: E(): 0%2C 78.7%25 id in 428 aa gene gene3758 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3806 YPO3807 YPO3807 livH livH 4273137 4274063 - high-affinity branched-chain amino acid transport system%2C permease protein Similar to Escherichia coli high-affinity branched-chain amino acid transport system permease protein LivH SW:LIVH_ECOLI (P08340) (308 aa) fasta scores: E(): 0%2C86.7%25 id in 308 aa%2C and to Salmonella typhimurium high-affinity branched-chain amino acid transport system permease protein LivH or LivA SW:LIVH_SALTY (P30295) (308 aa) fasta scores: E(): 0%2C 87.7%25 id in 308 aa gene gene3759 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3807 YPO3808 YPO3808 livJ livJ 4274244 4275359 - branched-chain amino acid-binding protein Similar to Escherichia coli leucine-specific binding protein precursor LivK SW:LIVK_ECOLI (P04816) (369 aa) fasta scores: E(): 0%2C 74.5%25 id in 365 aa%2C and to Escherichia coli leu/ile/val-binding protein precursor LivJ SW:LIVJ_ECOLI (P02917) (367 aa) fasta scores: E(): 0%2C 74.2%25 id in 368 aa gene gene3760 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3808 YPO3809 YPO3809 yhhK yhhK 4275781 4276173 + putative acetyltransferase Similar to Escherichia coli hypothetical 14.5 kDa protein in livK-livJ intergenic region YhhK SW:YHHK_ECOLI (P37613) (127 aa) fasta scores: E(): 2.8e-20%2C 46.9%25 id in 130 aa%2C and to Pseudomonas aeruginosa hypothetical protein Pa5144 TR:AAG08529 (EMBL:AE004927) (132 aa) fasta scores: E(): 0.00062%2C 39.2%25 id in 102 aa gene gene3761 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3809 YPO3810 YPO3810 tnp tnp 4276419 4276877 - transposase for the IS1541 insertion element Similar to Salmonella typhimurium%2C and Salmonella typhi transposase for insertion sequence IS200 TnpA SW:T200_SALTY (Q57334) (152 aa) fasta scores: E(): 0%2C 94.1%25 id in 152 aa. Identical to the Yersinia pseudotuberculosis IS1541-like element transposase Tnp TR:Q9X9F5 (EMBL:AJ238014) (152 aa) fasta scores: E(): 0%2C 100.0%25 id in 152 aa gene gene3762 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3810 YPO3811 YPO3811 fam fam 4277091 4277948 - RNA polymerase sigma-32 factor Similar to Escherichia coli RNA polymerase sigma-32 factor RpoH or HtpR or Hin or Fam SW:RP32_ECOLI (P00580) (284 aa) fasta scores: E(): 0%2C 83.9%25 id in 285 aa%2C and to Serratia marcescens RNA polymerase sigma-32 factor RpoH SW:RP32_SERMA (P50510) (285 aa) fasta scores: E(): 0%2C 95.4%25 id in 285 aa gene gene3763 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3811 YPO3812 YPO3812 ftsS ftsS 4278259 4279212 - cell division protein Similar to Escherichia coli cell division protein FtsX or FtsS SW:FTSX_ECOLI (P10122) (352 aa) fasta scores: E(): 0%2C 74.2%25 id in 299 aa%2C and to Haemophilus influenzae cell division protein FtsX homolog Hi0770 SW:FTSX_HAEIN (P44872) (310 aa) fasta scores: E(): 0%2C 43.2%25 id in 292 aa gene gene3764 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3812 YPO3813 YPO3813 ftsE ftsE 4279202 4279870 - cell division ATP-binding protein Similar to Escherichia coli cell division ATP-binding protein FtsE SW:FTSE_ECOLI (P10115) (222 aa) fasta scores: E(): 0%2C 89.9%25 id in 217 aa%2C and to Vibrio cholerae cell division ATP-binding protein FtsE or Vc0148 TR:Q9KVJ5 (EMBL:AE004104) (233 aa) fasta scores: E(): 0%2C70.0%25 id in 217 aa gene gene3765 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3813 YPO3814 YPO3814 ftsY ftsY 4279876 4281501 - cell division protein Similar to Escherichia coli cell division protein FtsY SW:FTSY_ECOLI (P10121) (497 aa) fasta scores: E(): 0%2C63.7%25 id in 543 aa%2C and to Vibrio cholerae cell division protein FtsY or Vc0147 TR:Q9KVJ6 (EMBL:AE004104) (391 aa) fasta scores: E(): 0%2C 68.8%25 id in 382 aa gene gene3766 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3814 YPO3815 YPO3815 YPO3815 4281530 4281673 + hypothetical protein no significant database hits gene gene3767 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3815 YPO3816 YPO3816 YPO3816 4281783 4282445 + conserved hypothetical protein Similar to Escherichia coli hypothetical protein YhhF SW:YHHF_ECOLI (P10120) (198 aa) fasta scores: E(): 0%2C70.0%25 id in 190 aa%2C and to Vibrio cholerae hypothetical protein VC0146 vc0146 TR:Q9KVJ7 (EMBL:AE004104) (199 aa) fasta scores: E(): 0%2C 57.4%25 id in 190 aa gene gene3768 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3816 YPO3816a YPO3816a yhhL yhhL 4282435 4282707 + putative membrane protein Similar to Escherichia coli hypothetical protein YhhL SW:YHHL_ECOLI (P37614) (89 aa) fasta scores: E(): 6.6e-21%2C 64.3%25 id in 84 aa%2C and to Vibrio cholerae hypothetical protein VC0145 TR:Q9KVJ8 (EMBL:AE004104) (88 aa) fasta scores: E(): 2.3e-05%2C 26.5%25 id in 83 aa gene gene3769 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3816a YPO3817 YPO3817 YPO3817 4282894 4283313 - putative membrane protein Similar to Escherichia coli hypothetical protein YhhM SW:YHHM_ECOLI (P37615) (119 aa) fasta scores: E(): 2.5e-08%2C 35.8%25 id in 134 aa. CDS contains and insert%2Cresidues 86 to 103%2C relative to the E. coli protein. gene gene3770 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3817 YPO3818 YPO3818 YPO3818 4283525 4283845 - conserved hypothetical protein Similar to Pseudomonas aeruginosa hypothetical protein PA3979 TR:AAG07366 (EMBL:AE004816) (110 aa) fasta scores: E(): 5.8e-17%2C 45.6%25 id in 103 aa%2C and to Xylella fastidiosa hypothetical protein XF1055 TR:Q9PEH3 (EMBL:AE003942) (106 aa) fasta scores: E(): 1.8e-13%2C 41.3%25 id in 104 aa gene gene3771 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3818 YPO3819 YPO3819 yhhN yhhN 4284135 4284761 + putative membrane protein Similar to Escherichia coli hypothetical protein YhhN SW:YHHN_ECOLI (P37616) (208 aa) fasta scores: E(): 0%2C66.8%25 id in 208 aa%2C and to Vibrio cholerae hypothetical protein VCA0703 TR:Q9KLP0 (EMBL:AE004400) (229 aa) fasta scores: E(): 2.1e-13%2C 29.9%25 id in 187 aa gene gene3772 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3819 YPO3820 YPO3820 YPO3820 4285175 4287541 + putative P-type cation-translocating membrane ATPase Similar to Proteus mirabilis putative P-type cation-translocating membrane ATPase PpaA TR:O33448 (EMBL:AJ001437) (692 aa) fasta scores: E(): 0%2C 66.3%25 id in 698 aa%2C and to Escherichia coli zinc-transporting ATPase ZntA SW:ATZN_ECOLI (P37617) (732 aa) fasta scores: E(): 0%2C64.9%25 id in 709 aa. Possible alternative translational start sites gene gene3773 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3820 YPO3821 YPO3821 YPO3821 4287625 4287879 - conserved hypothetical protein Similar to Escherichia coli hypothetical protein YhhP SW:YHHP_ECOLI (P37618) (81 aa) fasta scores: E(): 2e-24%2C 77.5%25 id in 80 aa%2C and to Vibrio cholerae hypothetical protein VC0024 TR:Q9KVW4 (EMBL:AE004094) (82 aa) fasta scores: E(): 1e-18%2C 65.4%25 id in 78 aa gene gene3774 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3821 YPO3822 YPO3822 yhhQ yhhQ 4288163 4288831 + putative membrane protein Similar to Escherichia coli hypothetical protein YhhQ SW:YHHQ_ECOLI (P37619) (221 aa) fasta scores: E(): 0%2C74.2%25 id in 213 aa%2C and to Vibrio cholerae hypothetical protein VC2706 TR:Q9KNM6 (EMBL:AE004336) (223 aa) fasta scores: E(): 0%2C 69.1%25 id in 207 aa gene gene3775 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3822 YPO3823 YPO3823 dcrB dcrB 4288961 4289488 + putative lipoprotein Similar to Escherichia coli hypothetical protein DcrB TR:P76699 (EMBL:U00039) (203 aa) fasta scores: E(): 1.1e-32%2C 55.4%25 id in 184 aa. CDS is truncated at the N-terminus and contains an 11 amino acid deletion at residue 25%2C relative to the E. coli protein gene gene3776 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3823 YPO3824 YPO3824 glpC glpC 4289650 4290897 - anaerobic glycerol-3-phosphate dehydrogenase subunit C Similar to Escherichia coli anaerobic glycerol-3-phosphate dehydrogenase subunit C protein GlpC SW:GLPC_ECOLI (P13034) (396 aa) fasta scores: E(): 0%2C 72.9%25 id in 406 aa%2C and to Haemophilus influenzae anaerobic glycerol-3-phosphate dehydrogenase subunit C protein GlpC SW:GLPC_HAEIN (P43801) (426 aa) fasta scores: E(): 0%2C 57.4%25 id in 411 aa gene gene3777 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3824 YPO3825 YPO3825 glpB glpB 4290942 4292216 - putative anaerobic glycerol-3-phosphate dehydrogenase subunit B Similar to Escherichia coli anaerobic glycerol-3-phosphate dehydrogenase subunit B protein GlpB SW:GLPB_ECOLI (P13033) (419 aa) fasta scores: E(): 0%2C 49.8%25 id in 416 aa%2C and to Haemophilus influenzae anaerobic glycerol-3-phosphate dehydrogenase subunit B protein GlpB SW:GLPB_HAEIN (P43800) (432 aa) fasta scores: E(): 0%2C 41.8%25 id in 433 aa gene gene3778 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3825 YPO3826 YPO3826 glpA glpA 4292206 4293861 - anaerobic glycerol-3-phosphate dehydrogenase subunit A Similar to Escherichia coli anaerobic glycerol-3-phosphate dehydrogenase subunit A protein GlpA SW:GLPA_ECOLI (P13032) (542 aa) fasta scores: E(): 0%2C 77.8%25 id in 528 aa%2C and to Haemophilus influenzae anaerobic glycerol-3-phosphate dehydrogenase subunit A protein GlpA SW:GLPA_HAEIN (P43799) (563 aa) fasta scores: E(): 0%2C 70.5%25 id in 543 aa gene gene3779 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3826 YPO3827 YPO3827 glpQ glpQ 4294486 4295601 + glycerophosphoryl diester phosphodiesterase Similar to Escherichia coli periplasmic glycerophosphoryl diester phosphodiesterase GlpQ SW:GLPQ_ECOLI (P09394) (358 aa) fasta scores: E(): 0%2C 73.6%25 id in 363 aa%2C and to Haemophilus influenzae glycerophosphoryl diester phosphodiesterase precursor GlpQ SW:GLPQ_HAEIN (Q06282) (364 aa) fasta scores: E(): 0%2C 63.3%25 id in 362 aa gene gene3780 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3827 YPO3828 YPO3828 YPO3828 4295675 4296727 - hypothetical protein no significant database hits gene gene3781 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3828 YPO3829 YPO3829 YPO3829 4297143 4297952 - putative haloacid dehalogenase-like hydrolase Similar to Salmonella typhimurium LT2 hypothetical protein YigL TR:Q9L6N4 (EMBL:AF233324) (266 aa) fasta scores: E(): 0%2C 74.0%25 id in 265 aa%2C and to Escherichia coli hypothetical protein YigL SW:YIGL_ECOLI (P27848) (265 aa) fasta scores: E(): 0%2C 68.3%25 id in 265 aa gene gene3782 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3829 YPO3830 YPO3830 pldB pldB 4297987 4299000 - putative lysophospholipase Similar to Escherichia coli lysophospholipase L2 PldB SW:PLDB_ECOLI (P07000) (340 aa) fasta scores: E(): 0%2C60.4%25 id in 333 aa%2C and to Salmonella typhimurium LT2 lysophospholipase PldB TR:Q9L6N5 (EMBL:AF233324) (338 aa) fasta scores: E(): 0%2C 57.4%25 id in 333 aa gene gene3783 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3830 YPO3831 YPO3831 rhtB rhtB 4299196 4299816 + putative homoserine/homoserine lactone efflux protein Similar to Escherichia coli homoserine/homoserine lactone efflux protein RhtB SW:RHTB_ECOLI (P27847) (206 aa) fasta scores: E(): 0%2C 75.5%25 id in 204 aa%2C and to Salmonella typhimurium LT2 hypothetical protein RthB TR:Q9L6N6 (EMBL:AF233324) (206 aa) fasta scores: E(): 0%2C 75.5%25 id in 204 aa gene gene3784 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3831 YPO3832 YPO3832 rhtC rhtC 4299867 4300487 - threonine efflux protein Similar to Escherichia coli threonine efflux protein RhtC SW:RHTC_ECOLI (P27846) (206 aa) fasta scores: E(): 0%2C71.4%25 id in 206 aa%2C and to Salmonella typhimurium LT2 hypothetical protein RhtC TR:Q9L6N7 (EMBL:AF233324) (206 aa) fasta scores: E(): 0%2C 71.8%25 id in 206 aa gene gene3785 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3832 YPO3833 YPO3833 recQ recQ 4300594 4302426 - ATP-dependent DNA helicase Similar to Escherichia coli ATP-dependent DNA helicase RecQ SW:RECQ_ECOLI (P15043) (607 aa) fasta scores: E(): 0%2C 81.4%25 id in 607 aa%2C and to Salmonella typhimurium LT2 probable ATP-dependent DNA helicase RecQ TR:Q9L6N8 (EMBL:AF233324) (615 aa) fasta scores: E(): 0%2C 80.8%25 id in 610 aa gene gene3786 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3833 YPO3834 YPO3834 pldA pldA 4302504 4303382 - phospholipase A Identical to Yersinia pseudotuberculosis phospholipase A PldA TR:Q9S1D7 (EMBL:AJ245393) (292 aa) fasta scores: E(): 0%2C 100.0%25 id in 292 aa%2C and similar to Enterobacter agglomerans outer membrane phospholipase A PldA TR:Q9Z4N8 (EMBL:AF034414) (292 aa) fasta scores: E(): 0%2C 93.5%25 id in 292 aa gene gene3787 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3834 YPO3835 YPO3835 YPO3835 4303604 4304074 + conserved hypothetical protein Similar to Escherichia coli hypothetical protein YigI SW:YIGI_ECOLI (P27845) (155 aa) fasta scores: E(): 0%2C66.9%25 id in 151 aa%2C and to Salmonella typhimurium LT2 hypothetical protein YigI TR:Q9L6P0 (EMBL:AF233324) (155 aa) fasta scores: E(): 0%2C 66.9%25 id in 151 aa gene gene3788 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3835 YPO3836 YPO3836 rarD rarD 4304161 4305051 + putative membrane protein Similar to Salmonella typhimurium LT2 hypothetical protein RarD TR:Q9L6P1 (EMBL:AF233324) (294 aa) fasta scores: E(): 0%2C 75.8%25 id in 293 aa%2C and to Escherichia coli hypothetical protein RarD SW:RARD_ECOLI (P27844) (296 aa) fasta scores: E(): 0%2C 72.0%25 id in 296 aa gene gene3789 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3836 YPO3837 YPO3837 corA corA 4305149 4306099 - magnesium and cobalt transport protein Similar to Escherichia coli magnesium and cobalt transport protein CorA SW:CORA_ECOLI (P27841) (316 aa) fasta scores: E(): 0%2C 88.3%25 id in 316 aa%2C and to Salmonella typhi magnesium and cobalt transport protein CorA TR:Q9L5P6 (EMBL:AF250878) (316 aa) fasta scores: E(): 0%2C 87.3%25 id in 316 aa gene gene3790 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3837 YPO3838 YPO3838 YPO3838 4306748 4307590 - conserved hypothetical protein Similar to Rhizobium sp. hypothetical protein Y4OV SW:Y4OV_RHISN (P55607) (285 aa) fasta scores: E(): 0%2C 69.4%25 id in 271 aa%2C and to the C-terminus of Arabidopsis thaliana hypothetical protein TR:BAB10918 (EMBL:AB013389) (754 aa) fasta scores: E(): 0%2C 64.1%25 id in 270 aa gene gene3791 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3838 YPO3839 YPO3839 YPO3839 4307604 4308821 - conserved hypothetical protein Similar to Rhizobium sp. hypothetical protein Y4OU SW:Y4OU_RHISN (P55606) (402 aa) fasta scores: E(): 0%2C 53.9%25 id in 395 aa%2C and to the N-terminus of Arabidopsis thaliana hypothetical protein TR:BAB10918 (EMBL:AB013389) (754 aa) fasta scores: E(): 0%2C 43.4%25 id in 422 aa gene gene3792 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3839 YPO3840 YPO3840 YPO3840 4309249 4309935 + putative TetR-family regulatory protein Poor database hits to the full length CDS. N-terminal region similar to Streptomyces coelicolor gamma-butyrolactone binding protein ScbR TR:O86852 (EMBL:AJ007731) (215 aa) fasta scores: E(): 0.19%2C 26.0%25 id in 104 aa%2C and Streptomyces coelicolor putative TetR family transcriptional regulatory protein SCH63.16C TR:CAC10307 (EMBL:AL442629) (245 aa) fasta scores: E(): 0.24%2C 25.9%25 id in 162 aa gene gene3793 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3840 YPO3841 YPO3841 mutU mutU 4310049 4312211 - DNA helicase II Similar to Escherichia coli DNA helicase II UvrD SW:UVRD_ECOLI (P03018) (720 aa) fasta scores: E(): 0%2C 88.2%25 id in 720 aa%2C and to Serratia marcescens DNA helicase II UvrD TR:O31089 (EMBL:AF028736) (720 aa) fasta scores: E(): 0%2C 92.4%25 id in 720 aa gene gene3794 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3841 YPO3842 YPO3842 YPO3842 4312313 4313029 - putative haloacid dehalogenase-like hydrolase Similar to Serratia marcescens hypothetical protein TR:O31088 (EMBL:AF028736) (238 aa) fasta scores: E(): 0%2C76.1%25 id in 238 aa%2C and to Escherichia coli hypothetical protein YigB SW:YIGB_ECOLI (P23306) (238 aa) fasta scores: E(): 0%2C 64.7%25 id in 238 aa gene gene3795 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3842 YPO3843 YPO3843 xerC xerC 4313029 4313940 - putative integrase/recombinase Similar to Serratia marcescens site specific recombinase XerC TR:O31087 (EMBL:AF028736) (303 aa) fasta scores: E(): 0%2C 80.5%25 id in 303 aa%2C and to Salmonella typhimurium integrase/recombinase XerC TR:AAF33443 (EMBL:U92525) (300 aa) fasta scores: E(): 0%2C 73.6%25 id in 296 aa gene gene3796 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3843 YPO3844 YPO3844 YPO3844 4313937 4314641 - conserved hypothetical protein Similar to Escherichia coli hypothetical protein YigA SW:YIGA_ECOLI (P23305) (235 aa) fasta scores: E(): 0%2C66.1%25 id in 230 aa%2C and to Salmonella typhimurium LT2 hypothetical protein YigA TR:Q9L6P5 (EMBL:AF233324) (235 aa) fasta scores: E(): 0%2C 63.8%25 id in 235 aa gene gene3797 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3844 YPO3845 YPO3845 dapF dapF 4314706 4315530 - diaminopimelate epimerase Similar to Haemophilus influenzae diaminopimelate epimerase DapF SW:DAPF_HAEIN (P44859) (274 aa) fasta scores: E(): 0%2C 75.9%25 id in 274 aa. The N-terminal region of the Yersinia pestis diaminopimelate epimerase has been previosuly sequenced as DapF (fragment) SW:DAPF_YERPE (P46357) (198 aa) fasta scores: E(): 0%2C 99.5%25 id in 185 aa gene gene3798 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3845 YPO3846 YPO3846 YPO3846 4315714 4315902 - putative lipoprotein Similar to Escherichia coli hypothetical protein YifL SW:YIFL_ECOLI (P39166) (67 aa) fasta scores: E(): 0.00094%2C 45.0%25 id in 60 aa%2C and to Salmonella typhimurium LT2 hypothetical protein YifL TR:Q9L6P7 (EMBL:AF233324) (67 aa) fasta scores: E(): 0.0008%2C 44.3%25 id in 61 aa gene gene3799 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3846 YPO3847 YPO3847 cyaY cyaY 4316054 4316374 + frataxin-like protein Previously sequenced as Yersinia pestis hypothetical protein CyaY SW:CYAY_YERPE (P46356) (106 aa) fasta scores: E(): 0%2C 100.0%25 id in 106 aa. Similar to Yersinia intermedia hypothetical protein CyaY SW:CYAY_YERIN (P30534) (107 aa) fasta scores: E(): 0%2C 87.9%25 id in 107 aa gene gene3800 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3847 YPO3848 YPO3848 cya cya 4316618 4319170 - adenylate cyclase Previously sequenced as Yersinia pestis adenylate cyclase Cya SW:CYAA_YERPE (P40127) (850 aa) fasta scores: E(): 0%2C 99.3%25 id in 850 aa. Sequence varies from the database entry at 5 residues. CDS is similar to Escherichia coli adenylate cyclase CyaA SW:CYAA_ECOLI (P00936) (848 aa) fasta scores: E(): 0%2C 83.5%25 id in 831 aa gene gene3801 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3848 YPO3849 YPO3849 hemC hemC 4319664 4320605 + porphobilinogen deaminase Similar to Escherichia coli porphobilinogen deaminase HemC SW:HEM3_ECOLI (P06983) (313 aa) fasta scores: E(): 0%2C 80.5%25 id in 313 aa%2C and to Salmonella typhimurium porphobilinogen deaminase HemC SW:HEM3_SALTY (Q9L6Q2) (313 aa) fasta scores: E(): 0%2C 79.6%25 id in 313 aa gene gene3802 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3849 YPO3850 YPO3850 hemD hemD 4320602 4321351 + uroporphyrinogen-III synthase Similar to Escherichia coli uroporphyrinogen-III synthase HemD SW:HEM4_ECOLI (P09126) (246 aa) fasta scores: E(): 0%2C 61.0%25 id in 246 aa%2C and to Salmonella typhimurium LT2 probable uroporphyrinogen-III synthase HemD TR:Q9L6Q3 (EMBL:AF233324) (246 aa) fasta scores: E(): 0%2C 61.4%25 id in 246 aa gene gene3803 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3850 YPO3851 YPO3851 hemX hemX 4321382 4322506 + putative uroporphyrin-III C-methyltransferase Similar to Escherichia coli putative uroporphyrin-III C-methyltransferase HemX SW:HEMX_ECOLI (P09127) (393 aa) fasta scores: E(): 0%2C 68.1%25 id in 367 aa%2Cand to Salmonella typhimurium LT2 putative uroporphyrinogen III methylase HemX TR:Q9L6Q4 (EMBL:AF233324) (389 aa) fasta scores: E(): 0%2C 65.5%25 id in 371 aa. Contains coiled-coil domain%2C residues 76 to 117 gene gene3804 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3851 YPO3852 YPO3852 hemY hemY 4322509 4323729 + putative protoheme IX biogenesis protein Similar to Escherichia coli putative protoheme IX biogenesis protein HemY SW:HEMY_ECOLI (P09128) (398 aa) fasta scores: E(): 0%2C 70.6%25 id in 395 aa%2C and to Salmonella typhimurium LT2 hypothetical protein HemY TR:Q9L6Q5 (EMBL:AF233324) (398 aa) fasta scores: E(): 0%2C 68.9%25 id in 395 aa gene gene3805 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3852 YPO3853 YPO3853 tnp tnp 4323922 4324380 - transposase for the IS1541 insertion element Similar to Salmonella typhimurium and Salmonella typhi transposase for insertion sequence IS200%2C TnpA%2CSW:TNPA_SALTY (Q57334) (152 aa) fasta scores: E(): 0%2C 93.4%25 id in 152 aa. Almost identical to the Yersinia pseudotuberculosis IS1541-like element transposase Tnp TR:Q9X9F5 (EMBL:AJ238014) (152 aa) fasta scores: E(): 0%2C99.3%25 id in 152 aa gene gene3806 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3853 YPO3854 YPO3854 YPO3854 4325886 4327277 - putative permease protein Similar to Salmonella typhimurium proline-specific permease ProY SW:PROY_SALTY (P37460) (456 aa) fasta scores: E(): 0%2C 46.0%25 id in 439 aa%2C and to Salmonella typhimurium probable transport protein YifK SW:YIFK_SALTY (P37456) (461 aa) fasta scores: E(): 0%2C 80.5%25 id in 451 aa gene gene3807 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3854 YPO3855 YPO3855 rffM rffM 4327801 4328541 - probable UDP-N-acetyl-D-mannosaminuronic acid transferase Similar to Escherichia coli probable UDP-N-acetyl-D-mannosaminuronic acid transferase WecG SW:WECG_ECOLI (P27836) (246 aa) fasta scores: E(): 0%2C 70.7%25 id in 246 aa%2C and to Bacillus subtilis teichoic acid biosynthesis protein A TagA SW:TAGA_BACSU (P27620) (256 aa) fasta scores: E(): 5.9e-19%2C 32.5%25 id in 203 aa gene gene3808 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3855 YPO3856 YPO3856 rffT rffT 4328550 4329914 - probable 4-alpha-L-fucosyltransferase Similar to Escherichia coli probable 4-alpha-L-fucosyltransferase WecF SW:WECF_ECOLI (P27835) (450 aa) fasta scores: E(): 0%2C 78.0%25 id in 445 aa%2C and to Salmonella typhimurium probable 4-alpha-L-fucosyltransferase WecF SW:WECF_SALTY (P37458) (426 aa) fasta scores: E(): 0%2C 78.9%25 id in 413 aa gene gene3809 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3856 YPO3857 YPO3857 YPO3857 4329911 4330996 - conserved hypothetical protein Similar to Escherichia coli hypothetical protein YifM SW:YIFM_ECOLI (P56258) (359 aa) fasta scores: E(): 0%2C63.5%25 id in 359 aa%2C and to Salmonella typhimurium LT2 hypothetical protein YifM TR:Q9L6Q8 (EMBL:AF233324) (359 aa) fasta scores: E(): 0%2C 64.6%25 id in 359 aa gene gene3810 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3857 YPO3858 YPO3858 b3792 b3792 4331019 4332275 - putative lipopolysaccharide biosynthesis protein Similar to Escherichia coli possible lipopolysaccharide biosynthesis protein WzxE SW:WZXE_ECOLI (P27834) (416 aa) fasta scores: E(): 0%2C 75.0%25 id in 416 aa%2Cand to Salmonella typhimurium LT2 hypothetical protein WzxE TR:Q9L6Q9 (EMBL:AF233324) (416 aa) fasta scores: E(): 0%2C74.8%25 id in 416 aa gene gene3811 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3858 YPO3859 YPO3859 b3791 b3791 4332277 4333407 - putative lipopolysaccharide biosynthesis protein Similar to Escherichia coli lipopolysaccharide biosynthesis protein RffA SW:RFFA_ECOLI (P27833) (376 aa) fasta scores: E(): 0%2C 84.8%25 id in 375 aa%2C and to Salmonella typhimurium LT2 hypothetical protein WecE TR:Q9L6R0 (EMBL:AF233324) (376 aa) fasta scores: E(): 0%2C 82.4%25 id in 375 aa gene gene3812 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3859 YPO3860 YPO3860 b3790 b3790 4333409 4334077 - putative lipopolysaccharide biosynthesis protein Similar to Escherichia coli lipopolysaccharide biosynthesis protein RffC SW:RFFC_ECOLI (P27832) (181 aa) fasta scores: E(): 2e-28%2C 50.7%25 id in 201 aa%2C and to Salmonella typhimurium LT2 hypothetical protein WecD TR:Q9L6R1 (EMBL:AF233324) (182 aa) fasta scores: E(): 1.2e-27%2C 49.5%25 id in 202 aa. CDS contains extra internal and N-terminal residues in comparison to the other orthologues gene gene3813 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3860 YPO3861 YPO3861 rffH rffH 4334124 4335005 - glucose-1-phosphate thymidylyltransferase Similar to Escherichia coli glucose-1-phosphate thymidylyltransferase RffH SW:RFFH_ECOLI (P27831) (293 aa) fasta scores: E(): 0%2C 86.7%25 id in 293 aa%2C and to Klebsiella pneumoniae glucose-1-phosphate thymidylyl transferase RmlA TR:Q9ZFP0 (EMBL:AF097519) (301 aa) fasta scores: E(): 0%2C76.6%25 id in 282 aa gene gene3814 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3861 YPO3862 YPO3862 rffG rffG 4335300 4336367 - dTDP-D-glucose-4%2C6-dehydratase Similar to Erwinia carotovora subsp. atroseptica dTDP-D-glucose-4%2C6-dehydratase RffG TR:O68459 (EMBL:AF044332) (357 aa) fasta scores: E(): 0%2C 85.4%25 id in 355 aa%2C and to Escherichia coli dTDP-glucose 4%2C6-dehydratase RffG SW:RFFG_ECOLI (P27830) (355 aa) fasta scores: E(): 0%2C 82.2%25 id in 353 aa gene gene3815 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3862 YPO3863 YPO3863 b3787 b3787 4336364 4337626 - putative UDP-glucose/GDP-mannose dehydrogenase Similar to Escherichia coli UDP-N-acetyl-D-mannosaminuronic acid dehydrogenase RffD SW:WECC_ECOLI (P27829) (420 aa) fasta scores: E(): 0%2C 82.1%25 id in 420 aa%2C and to Burkholderia solanacearum NDP-N-acetyl-D-galactosaminuronic acid dehydrogenase EpsD SW:EPSD_BURSO (Q45410) (423 aa) fasta scores: E(): 0%2C 62.8%25 id in 419 aa gene gene3816 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3863 YPO3864 YPO3864 nfrC nfrC 4337623 4338753 - UDP-N-acetylglucosamine 2-epimerase Similar to Escherichia coli UDP-N-acetylglucosamine 2-epimerase RffE SW:WECB_ECOLI (P27828) (376 aa) fasta scores: E(): 0%2C 78.5%25 id in 376 aa%2C and to Salmonella typhimurium LT2 probable UDP-N-acetyl-D-glucosamine 2-epimerase WecB TR:Q9L6R5 (EMBL:AF233324) (376 aa) fasta scores: E(): 0%2C 77.7%25 id in 376 aa gene gene3817 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3864 YPO3865 YPO3865 b3785 b3785 4339034 4340095 - putative lipopolysaccharide biosynthesis protein Similar to Escherichia coli lipopolysaccharide biosynthesis protein WzzE SW:WZZE_ECOLI (P25905) (349 aa) fasta scores: E(): 0%2C 67.5%25 id in 342 aa%2C and to Salmonella typhimurium lipopolysaccharide biosynthesis protein WzzE SW:WZZE_SALTY (O33789) (347 aa) fasta scores: E(): 0%2C 59.1%25 id in 335 aa gene gene3818 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3865 YPO3866 YPO3866 b3784 b3784 4340131 4341228 - putative undecaprenyl-phosphate alpha-N-acetylglucosaminyltransferase Similar to Escherichia coli putative undecaprenyl-phosphate alpha-N-acetylglucosaminyltransferase Rfe SW:RFE_ECOLI (P24235) (367 aa) fasta scores: E(): 0%2C 80.7%25 id in 352 aa%2Cand to Salmonella typhimurium LT2 putative undecaprenyl-phosphate N- acetylglucosaminyltransferase Rfe TR:Q9L6R7 (EMBL:AF233324) (367 aa) fasta scores: E(): 0%2C77.7%25 id in 355 aa gene gene3819 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3866 YPO3867 YPO3867 nitA nitA 4341763 4343022 - transcription termination factor Similar to Escherichia coli transcription termination factor Rho SW:RHO_ECOLI (P03002) (419 aa) fasta scores: E(): 0%2C 95.2%25 id in 419 aa%2C and to Salmonella typhimurium transcription termination factor Rho SW:RHO_SALTY (P26980) (419 aa) fasta scores: E(): 0%2C 95.0%25 id in 419 aa gene gene3820 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3867 YPO3868 YPO3868 fipA fipA 4343502 4343828 - thioredoxin 1 Similar to Escherichia coli and Salmonella typhimurium thioredoxin 1 TrxA SW:THIO_ECOLI (P00274) (108 aa) fasta scores: E(): 0%2C 86.9%25 id in 107 aa%2C and to Vibrio cholerae thioredoxin VC0306 TR:Q9KV51 (EMBL:AE004119) (108 aa) fasta scores: E(): 0%2C 79.6%25 id in 108 aa gene gene3821 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3868 YPO3869 YPO3869 mmrA mmrA 4343947 4345233 + putative DEAD-box helicase Similar to Escherichia coli putative ATP-dependent RNA helicase RhlB SW:RHLB_ECOLI (P24229) (420 aa) fasta scores: E(): 0%2C 89.0%25 id in 427 aa%2C and to Vibrio cholerae ATP-dependent RNA helicase RhlB TR:Q9KV52 (EMBL:AE004118) (438 aa) fasta scores: E(): 0%2C 74.9%25 id in 426 aa gene gene3822 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3869 YPO3870 YPO3870 gpp gpp 4345237 4346728 + guanosine-5'-triphosphate%2C3'-diphosphate pyrophosphatase (pseudogene) Similar to Escherichia coli guanosine-5'-triphosphate%2C3'-diphosphate pyrophosphatase GppA SW:GPPA_ECOLI (P25552) (494 aa) fasta scores: E(): 0%2C74.3%25 id in 491 aa%2C and to Salmonella typhimurium LT2 probable guanosine-5'-triphosphate%2C3'-diphosphatatase GppA TR:Q9L6S0 (EMBL:AF233324) (493 aa) fasta scores: E(): 0%2C74.1%25 id in 490 aa. The enzyme is involved in the regulation of the stringent response%2C catalysing the hydrolysis of pppGpp to ppGpp (magic spot). Contains frameshifts after codons 89 and 141. The sequence has been checked and is believed to be correct pseudogene gene3823 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3870 YPO3872 YPO3872 rep rep 4346899 4348920 - ATP-dependent DNA helicase Rep Similar to Escherichia coli ATP-dependent DNA helicase Rep SW:REP_ECOLI (P09980) (673 aa) fasta scores: E(): 0%2C 84.8%25 id in 672 aa%2C and to Salmonella typhimurium LT2 probable ATP-dependent DNA helicase Rep TR:Q9L6S1 (EMBL:AF233324) (674 aa) fasta scores: E(): 0%2C 85.4%25 id in 672 aa gene gene3824 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3872 YPO3873 YPO3873 ppiC ppiC 4349124 4349405 + peptidyl-prolyl cis-trans isomerase C Similar to Escherichia coli parvulin%2Cpeptidyl-prolyl cis-trans isomerase C PpiC SW:PPIC_ECOLI (P39159) (92 aa) fasta scores: E(): 7.9e-24%2C 67.4%25 id in 92 aa%2C and to Salmonella typhimurium LT2 probable peptidyl-prolyl cis-trans isomerase C PpiC TR:Q9L6S3 (EMBL:AF233324) (93 aa) fasta scores: E(): 1.5e-23%2C 66.3%25 id in 92 aa gene gene3825 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3873 YPO3874 YPO3874 YPO3874 4349644 4350435 + putative exported protein Similar to Carica papaya glutamine cyclotransferase protein TR:O81226 (EMBL:AF061240) (288 aa) fasta scores: E(): 0%2C 39.0%25 id in 259 aa%2C and to Deinococcus possible radiodurans glutamine cyclotransferase DR0112 TR:Q9RY39 (EMBL:AE001874) (294 aa) fasta scores: E(): 1.8e-28%2C 38.4%25 id in 232 aa gene gene3826 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3874 YPO3875 YPO3875 y1062 y1062 4350532 4351740 + transposase for the IS285 insertion element Previously sequenced Yersinia pestis transposase Y1062 or Ypmt1.80C TR:O68779 (EMBL:AF053947) (402 aa) fasta scores: E(): 0%2C 100.0%25 id in 402 aa. gene gene3827 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3875 YPO3876 YPO3876 YPO3876 4352063 4352290 - hypothetical protein no significant database hits. CDS DNA has a low G+C content%2C 24.12%25 gene gene3828 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3876 YPO3877 YPO3877 YPO3877 4352550 4353080 + putative fimbrial protein Similar to Proteus mirabilis uroepithelial cell adherence protein Uca TR:Q51889 (EMBL:U28420) (180 aa) fasta scores: E(): 1.4e-16%2C 40.7%25 id in 182 aa%2C and to Yersinia pestis probable pilin precursor TR:Q9ZC32 (EMBL:AL031866) (176 aa) fasta scores: E(): 2.9e-24%2C 46.9%25 id in 177 aa gene gene3829 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3877 YPO3878 YPO3878 YPO3878 4353144 4353875 + putative fimbrial chaperone Similar to Escherichia coli fimbrial chaperone F17a-D TR:O30925 (EMBL:AF022140) (240 aa) fasta scores: E(): 2.4e-27%2C 38.2%25 id in 238 aa%2C and to Escherichia coli O157:H7 putative chaperone Z1537 TR:AAG55652 (EMBL:AE005303) (240 aa) fasta scores: E(): 4.4e-31%2C 42.0%25 id in 238 aa gene gene3830 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3878 YPO3879 YPO3879 YPO3879 4353903 4356530 + putative outer membrane usher protein Similar to Proteus mirabilis outer membrane usher protein AtfC TR:P72211 (EMBL:Z78535) (843 aa) fasta scores: E(): 0%2C 30.0%25 id in 841 aa%2C and to Yersinia pestis probable outer membrane usher protein FocD TR:Q9ZC30 (EMBL:AL031866) (863 aa) fasta scores: E(): 0%2C 43.5%25 id in 873 aa gene gene3831 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3879 YPO3880 YPO3880 YPO3880 4356547 4357914 + putative exported protein Similar to Pseudomonas aeruginosa hypothetical protein PA2131 TR:AAG05519 (EMBL:AE004640) (453 aa) fasta scores: E(): 0%2C 44.5%25 id in 445 aa%2C and to Yersinia pestis possible pilin TR:Q9ZC29 (EMBL:AL031866) (449 aa) fasta scores: E(): 4.9e-30%2C 34.0%25 id in 415 aa. C-terminal region is similar to Escherichia coli F16 P-fimbriae major subunit protein Sia TR:P71221 (EMBL:Y08930) (167 aa) fasta scores: E(): 9.6%2C 26.3%25 id in 137 aa gene gene3832 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3880 YPO3881 YPO3881 YPO3881 4357952 4358698 + putative chaperone protein Similar to Bordetella pertussis chaperone protein FimB SW:FIMB_BORPE (P33409) (244 aa) fasta scores: E(): 9.2e-29%2C 36.9%25 id in 233 aa%2C and to Pseudomonas aeruginosa probable pili assembly chaperone PA2132 TR:AAG05520 (EMBL:AE004640) (237 aa) fasta scores: E(): 0%2C 48.5%25 id in 227 aa. Possible alternative translational start sites gene gene3833 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3881 YPO3882 YPO3882 YPO3882 4358722 4358880 + hypothetical protein no significant database hits gene gene3834 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3882 YPO3883 YPO3883 imm imm 4359333 4359590 - colicin immunity protein Similar to Escherichia coli colicin E9 immunity protein ImmE9 SW:IMM9_ECOLI (P13479) (86 aa) fasta scores: E(): 2e-19%2C 57.6%25 id in 85 aa%2C and to Escherichia coli colicin E2 immunity protein ImmE2 SW:IMM2_ECOLI (P04482) (86 aa) fasta scores: E(): 5.6e-19%2C 55.3%25 id in 85 aa gene gene3835 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3883 YPO3884 YPO3884 YPO3884 4359592 4359843 - colicin (partial) Probable gene remnant%2C similar to C-terminal regions of Escherichia coli colicin E8 Col SW:CEA8_ECOLI (P09882) (205 aa) fasta scores: E(): 2.2e-14%2C 51.9%25 id in 79 aa%2C and Pseudomonas aeruginosa pyocin S2 Pys2 SW:PYS2_PSEAE (Q06584) (689 aa) fasta scores: E(): 6.1e-13%2C 51.9%25 id in 81 aa%3B~was marked partial gene gene3836 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3884 YPO3885 YPO3885 YPO3885 4360096 4360359 - hypothetical protein no significant database hits gene gene3837 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3885 YPO3886 YPO3886 YPO3886 4360359 4361882 - colicin (partial) Probable gene remnant%2C similar to internal regions of Pseudomonas aeruginosa pyocin S1 Pys1 SW:PYS1_PSEAE (Q06583) (617 aa) fasta scores: E(): 1.2e-09%2C 27.7%25 id in 375 aa%2C and Klebsiella pneumoniae klebicin B Kba TR:AAD39262 (EMBL:AF156893) (765 aa) fasta scores: E(): 3.2e-14%2C 27.3%25 id in 425 aa%3B~was marked partial gene gene3838 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3886 YPO3887 YPO3887 YPO3887 4361997 4362197 - hypothetical protein Poor database hits to the full length CDS. Similar to the N-terminus of Mus musculus plectin 1 TR:Q9QXR9 (EMBL:AF188006) (71 aa) fasta scores: E(): 1.3%2C 33.9%25 id in 56 aa gene gene3839 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3887 YPO3888 YPO3888 ilvC ilvC 4362378 4363856 - ketol-acid reductoisomerase Similar to Escherichia coli ketol-acid reductoisomerase IlvC SW:ILVC_ECOLI (P05793) (490 aa) fasta scores: E(): 0%2C 92.1%25 id in 491 aa%2C and to Salmonella typhimurium LT2 probable ketol-acid reductoisomerase IlvC TR:Q9L6S4 (EMBL:AF233324) (491 aa) fasta scores: E(): 0%2C91.9%25 id in 492 aa gene gene3840 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3888 YPO3889 YPO3889 ilvY ilvY 4364142 4365023 + LysR-family transcriptional regulatory protein Similar to Escherichia coli transcriptional activator protein IlvY SW:ILVY_ECOLI (P05827) (297 aa) fasta scores: E(): 0%2C 73.7%25 id in 293 aa%2C and to Salmonella typhimurium LT2 probable transcriptional activator protein IlvY TR:Q9L6S5 (EMBL:AF233324) (297 aa) fasta scores: E(): 0%2C 73.7%25 id in 293 aa gene gene3841 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3889 YPO3890 YPO3890 YPO3890 4365078 4365287 - hypothetical protein no significant database hits gene gene3842 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3890 YPO3891 YPO3891 YPO3891 4365899 4366090 + hypothetical protein Poor database hits to the full length CDS. Similar to N-terminal region of Xylella fastidiosa hypothetical protein XF0155 TR:Q9PGZ1 (EMBL:AE003869) (295 aa) fasta scores: E(): 1.5e-05%2C 42.6%25 id in 54 aa. Similar to N-terminal region of YPO3983 (57.9%25 identity in 38 aa overlap) gene gene3843 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3891 YPO3892 YPO3892 YPO3892 4366162 4366854 + conserved hypothetical protein Poor database matches. Similar to C-terminal region of Xylella fastidiosa hypothetical protein XF0155 TR:Q9PGZ1 (EMBL:AE003869) (295 aa) fasta scores: E(): 0%2C 45.8%25 id in 212 aa. Similar to the C-terminal region of YPO3983 (51.8%25 identity in 220 aa overlap) gene gene3844 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3892 YPO3893 YPO3893 YPO3893 4366838 4367299 + putative membrane protein Poor database matches%2C similar to Escherichia coli O157:H7 hypothetical protein Z5334 TR:AAG59010 (EMBL:AE005613) (163 aa) fasta scores: E(): 7.2e-12%2C 35.4%25 id in 147 aa. Similar to YPO3894 (97.6%25 identity in 123 aa overlap)%2C YPO3935 (64.5%25 identity in 124 aa overlap)%2CYPO3895 (58.9%25 identity in 124 aa overlap) and YPO2860 (55.7%25 identity in 122 aa overlap) gene gene3845 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3893 YPO3894 YPO3894 YPO3894 4367358 4367840 + putative membrane protein No significant database matches. Similar to YPO3893 (97.6%25 identity in 123 aa overlap)%2C YPO3895 (67.1%25 identity in 161 aa overlap)%2C YPO3935 (66.0%25 identity in 159 aa overlap) and YPO2860 (53.8%25 identity in 160 aa overlap) gene gene3846 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3894 YPO3895 YPO3895 YPO3895 4367899 4368384 + putative membrane protein No significant database matches. Similar to YPO3935 (72.5%25 identity in 160 aa overlap)%2C YPO3894 (67.1%25 identity in 161 aa overlap)%2C YPO2860 (56.6%25 identity in 159 aa overlap) and YPO3893 (58.9%25 identity in 124 aa overlap) gene gene3847 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3895 YPO3896 YPO3896 ilvA ilvA 4368515 4370059 - threonine dehydratase Similar to Escherichia coli biosynthetic threonine dehydratase IlvA SW:THD1_ECOLI (P04968) (514 aa) fasta scores: E(): 0%2C 84.6%25 id in 514 aa%2C and to Salmonella typhimurium biosynthetic threonine dehydratase IlvA SW:THD1_SALTY (P20506) (514 aa) fasta scores: E(): 0%2C 83.5%25 id in 514 aa gene gene3848 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3896 YPO3897 YPO3897 ilvD ilvD 4370065 4371915 - dihydroxy-acid dehydratase Similar to Escherichia coli dihydroxy-acid dehydratase IlvD SW:ILVD_ECOLI (P05791) (605 aa) fasta scores: E(): 0%2C 87.5%25 id in 616 aa%2C and to Salmonella typhimurium LT2 probable dihydroxy-acid dehydratase IlvD TR:Q9L6S9 (EMBL:AF233324) (616 aa) fasta scores: E(): 0%2C86.5%25 id in 616 aa gene gene3849 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3897 YPO3899 YPO3899 ilvE ilvE 4372226 4373152 - branched-chain amino acid aminotransferase Similar to Escherichia coli branched-chain amino acid aminotransferase IlvE SW:ILVE_ECOLI (P00510) (308 aa) fasta scores: E(): 0%2C 91.5%25 id in 306 aa%2C and to Salmonella typhimurium branched-chain amino acid aminotransferase IlvE SW:ILVE_SALTY (P15168) (308 aa) fasta scores: E(): 0%2C 90.8%25 id in 306 aa gene gene3850 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3899 YPO3900 YPO3900 ilvM ilvM 4373175 4373432 - acetolactate synthase isozyme II small subunit Similar to Escherichia coli acetolactate synthase isozyme II small subunit IlvM SW:ILVM_ECOLI (P13048) (86 aa) fasta scores: E(): 2.9e-20%2C 67.4%25 id in 86 aa%2C and to Salmonella typhimurium LT2 probable acetolactate synthase isozyme II small subunit IlvM TR:Q9L6T1 (EMBL:AF233324) (86 aa) fasta scores: E(): 1e-20%2C 68.6%25 id in 86 aa gene gene3851 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3900 YPO3901 YPO3901 ilvG ilvG 4373429 4375075 - acetolactate synthase isozyme II large subunit Similar to Escherichia coli acetolactate synthase isozyme II large subunit IlvG SW:ILVG_ECOLI (P00892) (548 aa) fasta scores: E(): 0%2C 79.4%25 id in 548 aa%2C and to Salmonella typhimurium LT2 acetolactate synthase II large subunit IlvG_1 TR:Q9L6T2 (EMBL:AF233324) (548 aa) fasta scores: E(): 0%2C 79.6%25 id in 548 aa gene gene3852 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3901 YPO3902 YPO3902 YPO3902 4375698 4377221 + putative magnesium chelatase family protein Similar to Haemophilus influenzae competence protein ComM SW:COMM_HAEIN (P45049) (509 aa) fasta scores: E(): 0%2C63.8%25 id in 506 aa%2C and to Pasteurella multocida hypothetical protein ComM TR:AAK03594 (EMBL:AE006187) (509 aa) fasta scores: E(): 0%2C 65.2%25 id in 506 aa gene gene3853 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3902 YPO3903 YPO3903 YPO3903 4377478 4377816 - conserved hypothetical protein Similar to Escherichia coli hypothetical protein YifE SW:YIFE_ECOLI (P27827) (111 aa) fasta scores: E(): 0%2C82.9%25 id in 111 aa%2C and to Salmonella typhimurium LT2 hypothetical protein YifE TR:Q9L6T3 (EMBL:AF233324) (112 aa) fasta scores: E(): 0%2C 79.5%25 id in 112 aa gene gene3854 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3903 YPO3904 YPO3904 YPO3904 4377935 4378816 + LysR-family transcriptional regulatory protein Similar to Escherichia coli H-NS-dependent FlhDC transcriptional regulator HdfR TR:Q9KHQ8 (EMBL:AF251030) (279 aa) fasta scores: E(): 0%2C 61.1%25 id in 283 aa%2C and to Salmonella typhimurium LT2 hypothetical protein STMD1.99 TR:Q9L6T4 (EMBL:AF233324) (282 aa) fasta scores: E(): 0%2C63.0%25 id in 284 aa gene gene3855 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3904 YPO3905 YPO3905 YPO3905 4378803 4379795 - putative sugar transport system permease Similar to Escherichia coli L-arabinose transport system permease protein AraH SW:ARAH_ECOLI (P08532) (329 aa) fasta scores: E(): 1.4e-23%2C 34.0%25 id in 306 aa%2C and to Escherichia coli hypothetical ABC transporter permease protein YjfF SW:YJFF_ECOLI (P37772) (323 aa) fasta scores: E(): 0%2C 70.2%25 id in 322 aa gene gene3856 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3905 YPO3906 YPO3906 YPO3906 4379795 4380814 - putative sugar transport system permease Similar to Escherichia coli ribose transport system permease protein RbsC SW:RBSC_ECOLI (P04984) (321 aa) fasta scores: E(): 3.5e-28%2C 35.6%25 id in 312 aa%2C and to Escherichia coli hypothetical ABC transporter permease protein YtfT SW:YTFT_ECOLI (P39328) (341 aa) fasta scores: E(): 0%2C 70.0%25 id in 333 aa gene gene3857 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3906 YPO3907 YPO3907 YPO3907 4380826 4382316 - putative sugar transport system ATP-binding protein Similar to Escherichia coli ribose transport ATP-binding protein RbsA SW:RBSA_ECOLI (P04983) (501 aa) fasta scores: E(): 0%2C 38.6%25 id in 498 aa%2C and to Escherichia coli hypothetical ABC transporter ATP-binding protein YtfR SW:YTFR_ECOLI (P39326) (417 aa) fasta scores: E(): 0%2C 62.4%25 id in 375 aa gene gene3858 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3907 YPO3908 YPO3908 YPO3908 4382402 4383358 - putative periplasmic protein precursor Similar to Escherichia coli D-ribose-binding periplasmic protein precursor RbsB SW:RBSB_ECOLI (P02925) (296 aa) fasta scores: E(): 5e-20%2C 34.3%25 id in 230 aa%2C and to Escherichia coli ABC transporter periplasmic binding protein YtfQ SW:YTFQ_ECOLI (P39325) (318 aa) fasta scores: E(): 0%2C 75.8%25 id in 318 aa gene gene3859 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3908 YPO3909 YPO3909 dga dga 4390216 4391079 - putative glutamate racemase Similar to Escherichia coli glutamate racemase MurI SW:MURI_ECOLI (P22634) (285 aa) fasta scores: E(): 0%2C 71.4%25 id in 287 aa%2C and to Pasteurella multocida possible glutamate racemase MurI TR:AAK03001 (EMBL:AE006131) (269 aa) fasta scores: E(): 0%2C 51.7%25 id in 265 aa gene gene3863 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3909 YPO3910 YPO3910 YPO3910 4391024 4392901 - putative vitamin B12 receptor protein Similar to Escherichia coli vitamin B12 receptor protein BtuB SW:BTUB_ECOLI (P06129) (614 aa) fasta scores: E(): 0%2C 64.8%25 id in 623 aa%2C and to Citrobacter freundii hypothetical protein BtuB TR:O52903 (EMBL:Y09059) (612 aa) fasta scores: E(): 0%2C 64.2%25 id in 623 aa gene gene3864 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3910 YPO3911 YPO3911 trmA trmA 4393381 4394484 + tRNA (uracil-5)-methyltransferase Similar to Escherichia coli tRNA (uracil-5)-methyltransferase TrmA SW:TRMA_ECOLI (P23003) (366 aa) fasta scores: E(): 0%2C 76.8%25 id in 366 aa%2C and to Haemophilus influenzae tRNA (uracil-5)-methyltransferase TrmA SW:TRMA_HAEIN (P31812) (363 aa) fasta scores: E(): 0%2C66.8%25 id in 361 aa gene gene3865 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3911 YPO3912 YPO3912 yijD yijD 4394618 4395025 - putative membrane protein Similar to Escherichia coli hypothetical protein YijD SW:YIJD_ECOLI (P27308) (119 aa) fasta scores: E(): 5e-31%2C 67.0%25 id in 115 aa%2C and to Vibrio cholerae hypothetical protein VC0153 TR:Q9KVJ1 (EMBL:AE004105) (123 aa) fasta scores: E(): 8.7e-14%2C 39.4%25 id in 109 aa gene gene3866 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3912 YPO3913 YPO3913 YPO3913 4395038 4395685 - TetR-family transcriptional regulatory protein Similar to Escherichia coli hypothetical protein YijC SW:YIJC_ECOLI (P27307) (215 aa) fasta scores: E(): 0%2C95.7%25 id in 207 aa%2C and to Vibrio cholerae putative TetR family transcriptional regulator VC0152 TR:Q9KVJ2 (EMBL:AE004105) (213 aa) fasta scores: E(): 0%2C 72.5%25 id in 204 aa. CDS is truncated at the N-terminus relative to the E. coli orthologue gene gene3867 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3913 YPO3914 YPO3914 sth sth 4395891 4397291 + soluble pyridine nucleotide transhydrogenase Similar to Escherichia coli soluble pyridine nucleotide transhydrogenase SthA SW:STHA_ECOLI (P27306) (465 aa) fasta scores: E(): 0%2C 84.0%25 id in 462 aa%2C and to Vibrio cholerae soluble pyridine nucleotide transhydrogenase SthA W:STHA_VIBCH (P50529) (466 aa) fasta scores: E(): 0%2C 76.8%25 id in 466 aa gene gene3868 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3914 YPO3915 YPO3915 oxyR oxyR 4397274 4398191 - oxidative stress transcriptional regulatory protein Similar to Erwinia carotovora hydrogen peroxide-inducible genes activator OxyR SW:OXYR_ERWCA (P71318) (302 aa) fasta scores: E(): 0%2C 91.2%25 id in 297 aa%2Cand to Escherichia coli hydrogen peroxide-inducible genes activator OxyR SW:OXYR_ECOLI (P11721) (305 aa) fasta scores: E(): 0%2C 86.6%25 id in 305 aa gene gene3869 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3915 YPO3916 YPO3916 YPO3916 4398338 4399069 + putative peroxiredoxin/glutaredoxin family protein Similar to Vibrio cholerae peroxiredoxin family protein/glutaredoxin VC2637 TR:Q9KNU3 (EMBL:AE004330) (247 aa) fasta scores: E(): 0%2C 81.3%25 id in 241 aa%2C and to Haemophilus influenzae hypothetical protein HI0572 SW:Y572_HAEIN (P44758) (241 aa) fasta scores: E(): 0%2C 80.3%25 id in 239 aa. C-terminal region is similar to YPO0066 (50.0%25 identity in 66 aa overlap) gene gene3870 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3916 YPO3917 YPO3917 YPO3917 4399164 4400627 + putative pyridine nucleotide-disulphide oxidoreductase Similar to Halobacterium volcanii dihydrolipoamide dehydrogenase Lpd SW:DLDH_HALVO (Q04829) (474 aa) fasta scores: E(): 2.8e-30%2C 29.2%25 id in 466 aa%2C and to Vibrio cholerae class I pyridine nucleotide-disulfide oxidoreductase VC2638 TR:Q9KNU2 (EMBL:AE004330) (484 aa) fasta scores: E(): 0%2C 75.0%25 id in 488 aa gene gene3871 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3917 YPO3918 YPO3918 YPO3918 4400743 4401546 - putative membrane protein Similar to Pseudomonas putida ferric-siderophore transport protein TonB SW:TONB_PSEPU (Q05613) (243 aa) fasta scores: E(): 1.5e-13%2C 32.0%25 id in 253 aa%2C and to Haemophilus influenzae energy transducer protein TonB SW:TONB_HAEIN (P42872) (270 aa) fasta scores: E(): 1.3e-08%2C27.5%25 id in 280 aa gene gene3872 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3918 YPO3919 YPO3919 YPO3919 4401611 4402939 - HlyD family secretion protein Similar to Serratia marcescens inner membrane metalloprotease transport protein PrtE TR:Q57387 (EMBL:X81195) (437 aa) fasta scores: E(): 0%2C 45.6%25 id in 428 aa%2C and to Pseudomonas aeruginosa metalloprotease secretion protein HasE TR:AAG06793 (EMBL:AE004761) (443 aa) fasta scores: E(): 0%2C 43.8%25 id in 429 aa gene gene3873 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3919 YPO3920 YPO3920 YPO3920 4403015 4404823 - ABC transporter protein Similar to Pseudomonas fluorescens ABC protein HasD TR:Q9RHT2 (EMBL:AB023289) (580 aa) fasta scores: E(): 0%2C62.7%25 id in 560 aa%2C and to Serratia marcescens metalloprotease transporter HasD8000 TR:Q54416 (EMBL:D83582) (582 aa) fasta scores: E(): 0%2C 61.4%25 id in 585 aa gene gene3874 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3920 YPO3921 YPO3921 YPO3921 4404272 4404337 - gene gene3876 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3921 YPO3921 YPO3921 YPO3921 4404677 4404742 - gene gene3879 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3921 YPO3921 YPO3921 YPO3921 4404350 4404415 - gene gene3877 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3921 YPO3921 YPO3921 YPO3921 4404581 4404646 - gene gene3878 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3921 YPO3921 YPO3921 YPO3921 4403966 4404031 - gene gene3875 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3921 YPO3922 YPO3922 YPO3922 4404989 4405606 - hemophore HasA Similar to Serratia marcescens hemophore HasA TR:Q54450 (EMBL:X81195) (188 aa) fasta scores: E(): 2.6e-15%2C 31.6%25 id in 193 aa%2C and to Pseudomonas aeruginosa heme binding protein HasaA TR:AAG06795 (EMBL:Y16895) (205 aa) fasta scores: E(): 9.2e-15%2C 31.6%25 id in 215 aa gene gene3880 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3922 YPO3923 YPO3923 YPO3923 4405828 4408320 - putative TonB dependent receptor protein Similar to C-terminal regions of Serratia marcescens HasA receptor protein HasR TR:P72473 (EMBL:Y08983) (899 aa) fasta scores: E(): 0%2C 55.3%25 id in 810 aa%2C and Pseudomonas fluorescens HasA receptor protein HasR TR:Q9RHT4 (EMBL:AB023289) (916 aa) fasta scores: E(): 0%2C 40.8%25 id in 830 aa gene gene3881 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3923 YPO3924 YPO3924 argH argH 4408919 4410292 - putative argininosuccinate lyase Similar to Escherichia coli argininosuccinate lyase ArgH SW:ARLY_ECOLI (P11447) (457 aa) fasta scores: E(): 0%2C89.0%25 id in 456 aa%2C and to Vibrio cholerae argininosuccinate lyase VC2641 TR:Q9KNT9 (EMBL:AE004330) (458 aa) fasta scores: E(): 0%2C 74.3%25 id in 456 aa gene gene3882 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3924 YPO3925 YPO3925 argB argB 4410459 4411232 - acetylglutamate kinase Similar to Escherichia coli acetylglutamate kinase ArgB SW:ARGB_ECOLI (P11445) (258 aa) fasta scores: E(): 0%2C84.7%25 id in 255 aa%2C and to Buchnera aphidicola (subsp. Acyrthosiphon pisum) acetylglutamate kinase ArgB SW:ARGB_BUCAI (P57157) (257 aa) fasta scores: E(): 0%2C 67.3%25 id in 257 aa gene gene3883 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3925 YPO3927 YPO3927 argC argC 4411401 4412405 - N-acetyl-gamma-glutamyl-phosphate reductase Similar to Escherichia coli N-acetyl-gamma-glutamyl-phosphate reductase ArgC SW:ARGC_ECOLI (P11446) (334 aa) fasta scores: E(): 0%2C 78.1%25 id in 334 aa%2C and to Vibrio cholerae N-acetyl-gamma-glutamyl-phosphate reductase VC2644 TR:Q9KNT6 (EMBL:AE004330) (346 aa) fasta scores: E(): 0%2C65.4%25 id in 335 aa gene gene3884 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3927 YPO3928 YPO3928 argE argE 4412650 4413819 + acetylornithine deacetylase Similar to Escherichia coli acetylornithine deacetylase ArgE SW:ARGE_ECOLI (P23908) (383 aa) fasta scores: E(): 0%2C 77.5%25 id in 386 aa%2C and to Moritella sp 2674 acetylornithinase ArgE TR:Q9K4Z7 (EMBL:AJ252020) (381 aa) fasta scores: E(): 0%2C 58.4%25 id in 385 aa gene gene3885 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3928 YPO3929 YPO3929 glu glu 4414193 4416829 + phosphoenolpyruvate carboxylase Similar to Escherichia coli phosphoenolpyruvate carboxylase Ppc SW:CAPP_ECOLI (P00864) (883 aa) fasta scores: E(): 0%2C 82.1%25 id in 883 aa%2C and to Vibrio cholerae phosphoenolpyruvate carboxylase VC2646 TR:Q9KNT4 (EMBL:AE004331) (887 aa) fasta scores: E(): 0%2C 65.6%25 id in 882 aa gene gene3886 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3929 YPO3931 YPO3931 YPO3931 4417571 4418086 + insertion element IS1661 DNA-binding protein Similar to Escherichia coli insertion element IS1397 OrfA hypothetical 20.1 kDa protein SW:YI9A_ECOLI (Q47309) (173 aa) fasta scores: E(): 2.3e-20%2C 39.6%25 id in 169 aa gene gene3887 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3931 YPO3932 YPO3932 YPO3932 4418140 4418925 + transposase for insertion sequence IS1661 Similar to Escherichia coli insertion sequence IS1397 transposase%2C OrfB TR:Q47310 (EMBL:X92970) (240 aa) fasta scores: E(): 0%2C 53.0%25 id in 234 aa gene gene3888 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3932 YPO3934 YPO3934 YPO3934 4419280 4419711 - hypothetical protein doubtful CDS with no significant database hits gene gene3889 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3934 YPO3935 YPO3935 YPO3935 4419714 4420178 - putative membrane protein Poor database matches%2C similar to Escherichia coli O157:H7 hypothetical protein Z5334 TR:AAG59010 (EMBL:AE005613) (163 aa) fasta scores: E(): 4e-08%2C 29.5%25 id in 156 aa. Similar to YPO3895 (72.5%25 identity in 160 aa overlap)%2C YPO3894 (66.0%25 identity in 159 aa overlap)%2CYPO2860 (55.7%25 identity in 158 aa overlap) and YPO3893 (64.5%25 identity in 124 aa overlap) gene gene3890 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3935 YPO3936 YPO3936 YPO3936 4420487 4420861 - putative membrane protein Poor database matches%2C similar to N-terminus of Staphylococcus aureus receptor histidine kinase AgrC TR:AAG03057 (EMBL:AF288215) (411 aa) fasta scores: E(): 4.4%2C 23.7%25 id in 114 aa. Doubtful CDS gene gene3891 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3936 YPO3937 YPO3937 glpD glpD 4421260 4422681 + aerobic glycerol-3-phosphate dehydrogenase (partial) Similar to Escherichia coli aerobic glycerol-3-phosphate dehydrogenase GlpD SW:GLPD_ECOLI (P13035) (501 aa) fasta scores: E(): 0%2C 75.1%25 id in 473 aa%2Cand to Pseudomonas aeruginosa glycerol-3-phosphate dehydrogenase GlpD TR:AAG06972 (EMBL:L06231) (512 aa) fasta scores: E(): 0%2C 59.1%25 id in 464 aa. CDS is truncated at the N-terminus in comparison to other orthologues. Effect on function not known%3B~was marked partial gene gene3892 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3937 YPO3938 YPO3938 glgP glgP 4422844 4425291 - glycogen phosphorylase Similar to Escherichia coli glycogen phosphorylase GlgP SW:PHSG_ECOLI (P13031) (815 aa) fasta scores: E(): 0%2C79.4%25 id in 815 aa%2C and to Pasteurella multocida glycogen phosphorylase GlgP TR:AAK02629 (EMBL:AE006090) (818 aa) fasta scores: E(): 0%2C 62.4%25 id in 812 aa gene gene3893 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3938 YPO3939 YPO3939 glgA glgA 4425460 4426890 - glycogen synthase Similar to Escherichia coli glycogen synthase GlgA SW:GLGA_ECOLI (P08323) (477 aa) fasta scores: E(): 0%2C 71.4%25 id in 476 aa%2C and to Pasteurella multocida glycogen synthase GlgA TR:AAK02628 (EMBL:AE006090) (480 aa) fasta scores: E(): 0%2C 58.2%25 id in 476 aa gene gene3894 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3939 YPO3940 YPO3940 glgC glgC 4426958 4428388 - glucose-1-phosphate adenylyltransferase Similar to Escherichia coli glucose-1-phosphate adenylyltransferase GlgC SW:GLGC_ECOLI (P00584) (430 aa) fasta scores: E(): 0%2C 77.7%25 id in 412 aa%2C and to Salmonella typhimurium glucose-1-phosphate adenylyltransferase GlgC SW:GLGC_SALTY (P05415) (431 aa) fasta scores: E(): 0%2C 74.8%25 id in 413 aa. Similarity to other orthologues decreases at the C-terminus. CDS also contains extra amino acid residues. Possible frameshift after codon 411. Frame shift occurs at a poly G nonamer. Effect on function not known gene gene3895 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3940 YPO3941 YPO3941 glgX glgX 4428398 4430386 - putative alpha-amylase Similar to Arthrobacter sp Q36 glycogen debranching enzyme%2C isoamylase TreX TR:Q9LC80 (EMBL:AB031392) (823 aa) fasta scores: E(): 0%2C 45.2%25 id in 657 aa%2C and to Escherichia coli glycogen operon protein GlgX SW:GLGX_ECOLI (P15067) (657 aa) fasta scores: E(): 0%2C 60.8%25 id in 658 aa gene gene3896 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3941 YPO3942 YPO3942 glgB glgB 4430388 4432571 - 1%2C4-alpha-glucan branching enzyme Similar to Escherichia coli 1%2C4-alpha-glucan branching enzyme GlgB SW:GLGB_ECOLI (P07762) (728 aa) fasta scores: E(): 0%2C 70.1%25 id in 726 aa%2C and to Haemophilus influenzae 1%2C4-alpha-glucan branching enzyme GlgB SW:GLGB_HAEIN (P45177) (730 aa) fasta scores: E(): 0%2C 63.4%25 id in 725 aa gene gene3897 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3942 YPO3943 YPO3943 YPO3943 4433077 4434774 + putative membrane protein Similar to Staphylococcus aureus autolysis regulatory protein LytS TR:Q53705 (EMBL:L42945) (584 aa) fasta scores: E(): 0%2C 30.5%25 id in 583 aa%2C and to Escherichia coli hypothetical protein YehU SW:YEHU_ECOLI (P33357) (561 aa) fasta scores: E(): 0%2C 67.8%25 id in 552 aa gene gene3898 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3943 YPO3944 YPO3944 YPO3944 4434982 4444023 - putative invasin N-terminal region similar to Yersinia pestis invasin Inv TR:Q56937 (EMBL:U22457) (987 aa) fasta scores: E(): 0%2C37.1%25 id in 844 aa. Full length CDS similar to Escherichia coli probable invasin o2383 TR:P76347 (EMBL:AE000289) (2383 aa) fasta scores: E(): 0%2C 29.5%25 id in 2456 aa. Note this protein is highly repetitive and contains >22 large degenerate repeats spanning much of the predicted protein product. The most highly conserved repeat region is represented by the tandem repeat feature. gene gene3899 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3944 YPO3945 YPO3945 YPO3945 4445294 4445668 + hypothetical protein doubtful CDS with no significant database hits gene gene3900 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3945 YPO3946 YPO3946 YPO3946 4445759 4446046 - hypothetical protein no significant database hits gene gene3901 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3946 YPO3947 YPO3947 YPO3947 4446053 4446427 - hypothetical protein no significant database hits gene gene3902 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3947 YPO3948 YPO3948 YPO3948 4446668 4446949 - hypothetical protein no significant database hits gene gene3903 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3948 YPO3949 YPO3949 asd asd 4447118 4448221 - aspartate semialdehyde dehydrogenase Previously sequenced as Yersinia pestis and Yersinia pseudotuberculosis aspartate semialdehyde dehydrogenase Asd TR:AAG22007 (EMBL:AF282318) (367 aa) fasta scores: E(): 0%2C100.0%25 id in 367 aa. Similar to Escherichia coli aspartate-semialdehyde dehydrogenase Asd SW:DHAS_ECOLI (P00353) (367 aa) fasta scores: E(): 0%2C 83.6%25 id in 366 aa gene gene3904 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3949 YPO3950 YPO3950 yhgN yhgN 4448588 4449172 + putative membrane protein Similar to Escherichia coli hypothetical protein YhgN SW:YHGN_ECOLI (P46851) (197 aa) fasta scores: E(): 0%2C77.6%25 id in 192 aa%2C and to Buchnera aphidicola (subsp. Acyrthosiphon pisum) hypothetical protein BU449 SW:Y449_BUCAI (P57524) (182 aa) fasta scores: E(): 0%2C 72.4%25 id in 181 aa gene gene3905 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3950 YPO3951 YPO3951 YPO3951 4449412 4449816 - hypothetical protein no significant database hits to the full length CDS. N-terminal region is similar to Pseudomonas aeruginosa hypothetical protein PA0092 TR:AAG03482 (EMBL:AE004448) (94 aa) fasta scores: E(): 1.4e-06%2C 38.6%25 id in 101 aa gene gene3906 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3951 YPO3952 YPO3952 YPO3952 4450187 4450420 - hypothetical protein no significant database hits to the full length CDS. Similar to the N-terminal regions of YPO0639 (59.5%25 identity in 79 aa overlap) and YPO1258 (59.5%25 identity in 79 aa overlap) gene gene3907 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3952 YPO3953 YPO3953 YPO3953 4450602 4451105 - putative gluconokinase Similar to Escherichia coli thermosensitive gluconokinase IdnK SW:IDNK_ECOLI (P39208) (187 aa) fasta scores: E(): 0%2C 59.1%25 id in 159 aa%2C and to Escherichia coli thermoresistant gluconokinase GntK SW:GNTK_ECOLI (P46859) (175 aa) fasta scores: E(): 0%2C 59.2%25 id in 152 aa. Similar to YPO2540 (66.3%25 identity in 160 aa overlap) gene gene3908 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3953 YPO3954 YPO3954 gntM gntM 4451322 4452638 + putative gluconate permease Similar to Escherichia coli high-affinity gluconate transporter GntT SW:GNTT_ECOLI (P39835) (437 aa) fasta scores: E(): 0%2C 84.5%25 id in 438 aa%2C and to Escherichia coli Gnt-II system L-idonate transporter IdnT SW:IDNT_ECOLI (P39344) (439 aa) fasta scores: E(): 0%2C 61.2%25 id in 438 aa gene gene3909 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3954 YPO3955 YPO3955 gntR gntR 4452730 4453725 - gluconate utilization system Gnt-I transcriptional repressor Similar to Escherichia coli gluconate utilization system Gnt-I transcriptional repressor GntR SW:GNTR_ECOLI (P46860) (331 aa) fasta scores: E(): 0%2C 79.1%25 id in 325 aa%2Cand to Vibrio cholerae gluconate utilization system Gnt-I transcriptional repressor VC0289 TR:Q9KV68 (EMBL:AE004117) (332 aa) fasta scores: E(): 0%2C 52.5%25 id in 324 aa gene gene3910 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3955 YPO3956 YPO3956 YPO3956 4453854 4454549 - conserved hypothetical protein Similar to Escherichia coli hypothetical protein YhhW SW:YHHW_ECOLI (P46852) (231 aa) fasta scores: E(): 0%2C77.5%25 id in 231 aa%2C and to Synechocystis sp hypothetical protein SLL1773 TR:P73623 (EMBL:D90908) (232 aa) fasta scores: E(): 0%2C 50.4%25 id in 234 aa gene gene3911 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3956 YPO3957 YPO3957 YPO3957 4455044 4455313 + hypothetical protein no significant database hits gene gene3912 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3957 YPO3958 YPO3958 YPO3958 4455313 4456050 + putative response regulator protein Similar to Escherichia coli transcriptional regulatory protein OmpR SW:OMPR_ECOLI (P03025) (239 aa) fasta scores: E(): 9.6e-27%2C 37.1%25 id in 237 aa%2C and to Zymomonas mobilis aerobic respiration control protein ArcA TR:Q9X3W0 (EMBL:AF088896) (241 aa) fasta scores: E(): 8.5e-30%2C 39.2%25 id in 240 aa gene gene3913 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3958 YPO3959 YPO3959 YPO3959 4456235 4457242 - PfkB family carbohydrate kinase Similar to Lycopersicon esculentum fructokinase Frk1 TR:O04897 (EMBL:U64817) (347 aa) fasta scores: E(): 2.4e-06%2C 26.7%25 id in 318 aa%2C and to Bacillus halodurans possible fructokinase BH1857 TR:Q9KBR8 (EMBL:AP001513) (319 aa) fasta scores: E(): 1.2e-06%2C 28.2%25 id in 298 aa gene gene3914 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3959 YPO3960 YPO3960 YPO3960 4457252 4458112 - putative class-II fructose-bisphosphate aldolase Similar to Escherichia coli tagatose-bisphosphate aldolase AgaY SW:AGAY_ECOLI (P42908) (286 aa) fasta scores: E(): 2.8e-31%2C 37.1%25 id in 286 aa%2C and to Bacillus stearothermophilus fructose-bisphosphate aldolase Fba SW:ALF_BACST (P94453) (287 aa) fasta scores: E(): 0%2C 43.7%25 id in 286 aa gene gene3915 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3960 YPO3961 YPO3961 YPO3961 4458138 4458821 - hypothetical protein No significant database hits to the full length CDS. Similar to internal region of Ascaris lumbricoides CUT-1-like cuticlin protein precursor ASCUT-1 TR:Q93115 (EMBL:U73005) (385 aa) fasta scores: E(): 1.7%2C 28.9%25 id in 121 aa gene gene3916 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3961 YPO3962 YPO3962 YPO3962 4458896 4459840 - sugar-binding transport protein Similar to Bacillus subtilis D-ribose-binding protein precursor RbsB SW:RBSB_BACSU (P36949) (305 aa) fasta scores: E(): 1.4e-21%2C 35.1%25 id in 279 aa%2C and to Escherichia coli D-ribose-binding periplasmic protein precursor RbsB SW:RBSB_ECOLI (P02925) (296 aa) fasta scores: E(): 9.8e-20%2C 31.6%25 id in 297 aa gene gene3917 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3962 YPO3963 YPO3963 YPO3963 4459871 4460863 - sugar transport system permease protein Similar to Bacillus subtilis ribose transport system permease protein RbsC SW:RBSC_BACSU (P36948) (323 aa) fasta scores: E(): 0%2C 45.3%25 id in 316 aa%2C and to Escherichia coli ribose transport system permease protein RbsC SW:RBSC_ECOLI (P04984) (321 aa) fasta scores: E(): 0%2C 43.3%25 id in 326 aa gene gene3918 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3963 YPO3964 YPO3964 YPO3964 4460856 4462379 - sugar transport ATP-binding protein Similar to Escherichia coli ribose transport ATP-binding protein RbsA SW:RBSA_ECOLI (P04983) (501 aa) fasta scores: E(): 0%2C 43.9%25 id in 492 aa%2C and to Bacillus subtilis ribose transport ATP-binding protein RbsA SW:RBSA_BACSU (P36947) (493 aa) fasta scores: E(): 0%2C 45.9%25 id in 490 aa gene gene3919 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3964 YPO3965 YPO3965 YPO3965 4462568 4465123 + putative hybrid two-component system regulatory protein Probable hybrid two-component system regulatory protein. CDS contains both sensor histidine kinase domain and response regulator receiver domain. C-terminus is similar to Rhizobium leguminosarum regulatory protein FixL TR:Q52824 (EMBL:Z70305) (641 aa) fasta scores: E(): 0%2C33.3%25 id in 519 aa%2C and to Pseudomonas syringae histidine protein kinase-response regulator hybrid protein CvgsY TR:Q9WWH9 (EMBL:AF133262) (671 aa) fasta scores: E(): 0%2C44.6%25 id in 383 aa gene gene3920 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3965 YPO3966 YPO3966 YPO3966 4465259 4466455 - conserved hypothetical protein Similar to Escherichia coli hypothetical protein YhiN SW:YHIN_ECOLI (P37631) (400 aa) fasta scores: E(): 0%2C78.4%25 id in 398 aa%2C and to Vibrio cholerae hypothetical protein VC0080 TR:Q9KVQ9 (EMBL:AE004099) (398 aa) fasta scores: E(): 0%2C 59.3%25 id in 388 aa gene gene3921 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3966 YPO3967 YPO3967 YPO3967 4466766 4468262 + phosphate transport protein Similar to Escherichia coli probable low-affinity inorganic phosphate transporter 1 PitA SW:PITA_ECOLI (P37308) (499 aa) fasta scores: E(): 0%2C 75.6%25 id in 499 aa%2Cand to Escherichia coli probable low-affinity inorganic phosphate transporter 2 PitB SW:PITB_ECOLI (P43676) (499 aa) fasta scores: E(): 0%2C 70.6%25 id in 500 aa gene gene3922 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3967 YPO3968 YPO3968 tnp tnp 4468528 4468986 + transposase for the IS1541 insertion element Similar to Salmonella typhimurium and Salmonella typhi transposase for insertion sequence IS200%2C TnpA%2CSW:TNPA_SALTY (Q57334) (152 aa) fasta scores: E(): 0%2C 93.4%25 id in 152 aa. Almost identical to the Yersinia pseudotuberculosis IS1541-like element transposase Tnp TR:Q9X9F5 (EMBL:AJ238014) (152 aa) fasta scores: E(): 0%2C99.3%25 id in 152 aa gene gene3923 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3968 YPO3969 YPO3969 uspB uspB 4469119 4469454 - universal stress protein B Similar to Escherichia coli universal stress protein B UspB SW:USPB_ECOLI (P37632) (111 aa) fasta scores: E(): 0%2C 87.4%25 id in 111 aa%2C and to Vibrio cholerae hypothetical protein VC0079 TR:Q9KVR0 (EMBL:AE004099) (107 aa) fasta scores: E(): 2.9e-18%2C 47.7%25 id in 109 aa gene gene3924 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3969 YPO3970 YPO3970 uspA uspA 4470162 4470608 + universal stress protein A Similar to Escherichia coli universal stress protein A UspA SW:USPA_ECOLI (P28242) (143 aa) fasta scores: E(): 0%2C 93.0%25 id in 142 aa%2C and to Haemophilus influenzae universal stress protein A UspA SW:USPA_HAEIN (P44880) (141 aa) fasta scores: E(): 0%2C 66.4%25 id in 140 aa gene gene3925 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3970 YPO3971 YPO3971 gdhA gdhA 4470855 4472198 + NADP-specific glutamate dehydrogenase Similar to Escherichia coli NADP-specific glutamate dehydrogenase GdhA SW:DHE4_ECOLI (P00370) (447 aa) fasta scores: E(): 0%2C 83.9%25 id in 447 aa%2C and to Salmonella typhimurium NADP-specific glutamate dehydrogenase GdhA SW:DHE4_SALTY (P15111) (447 aa) fasta scores: E(): 0%2C 84.1%25 id in 447 aa gene gene3926 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3971 YPO3973 YPO3973 YPO3973 4472443 4473780 + metalloprotease Similar to Erwinia carotovora subsp. carotovora metalloprotease PrtW TR:Q9RB20 (EMBL:AF141295) (473 aa) fasta scores: E(): 0%2C 46.8%25 id in 427 aa%2C and to Serratia sp zinc-dependent proteinase%2C serralysin SW:PRZN_SERSP (P07268) (486 aa) fasta scores: E(): 0%2C 42.8%25 id in 449 aa. Sequence divergence at the N-terminus gene gene3927 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3973 YPO3974 YPO3974 YPO3974 4473845 4474615 - conserved hypothetical protein Similar to Escherichia coli hypothetical protein YyhiQ SW:YHIQ_ECOLI (P37633) (250 aa) fasta scores: E(): 0%2C78.2%25 id in 248 aa%2C and to Salmonella typhimurium hypothetical protein YhiQ SW:YHIQ_SALTY (Q9X6G2) (253 aa) fasta scores: E(): 0%2C 77.1%25 id in 249 aa gene gene3928 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3974 YPO3975 YPO3975 opdA opdA 4474619 4476661 - oligopeptidase A Similar to Escherichia coli oligopeptidase A OpdA SW:OPDA_ECOLI (P27298) (680 aa) fasta scores: E(): 0%2C 80.7%25 id in 680 aa%2C and to Salmonella typhimurium oligopeptidase A OpdA SW:OPDA_SALTY (P27237) (680 aa) fasta scores: E(): 0%2C 80.1%25 id in 680 aa gene gene3929 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3975 YPO3976 YPO3976 YPO3976 4476990 4477832 + conserved hypothetical protein Similar to Escherichia coli hypothetical protein YhiR SW:YHIR_ECOLI (P37634) (280 aa) fasta scores: E(): 0%2C78.2%25 id in 280 aa%2C and to Haemophilus influenzae hypothetical protein HI0441 SW:YHIR_HAEIN (P31777) (281 aa) fasta scores: E(): 0%2C 65.5%25 id in 281 aa gene gene3930 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3976 YPO3977 YPO3977 gor gor 4478018 4479370 + glutathione reductase Similar to Escherichia coli glutathione reductase Gor SW:GSHR_ECOLI (P06715) (450 aa) fasta scores: E(): 0%2C85.3%25 id in 450 aa%2C and to Vibrio cholerae glutathione reductase VC0186 TR:Q9KVG0 (EMBL:AE004109) (454 aa) fasta scores: E(): 0%2C 75.2%25 id in 451 aa gene gene3931 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3977 YPO3978 YPO3978 YPO3978 4479562 4480689 + putative regulatory protein Similar to Escherichia coli carbohydrate diacid regulator CdaR SW:CDAR_ECOLI (P37047) (385 aa) fasta scores: E(): 0%2C 35.8%25 id in 380 aa%2C and to Vibrio cholerae hypothetical protein VCA0905 TR:Q9KL43 (EMBL:AE004418) (379 aa) fasta scores: E(): 0%2C 38.2%25 id in 377 aa gene gene3932 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3978 YPO3979 YPO3979 YPO3979 4480867 4482135 + GntP family permease Similar to Escherichia coli high-affinity gluconate transporter GntP SW:GNTP_ECOLI (P39373) (447 aa) fasta scores: E(): 1.1e-10%2C 24.1%25 id in 452 aa%2C and to Haemophilus influenzae hypothetical protein HI0092 SW:Y092_HAEIN (Q57493) (419 aa) fasta scores: E(): 0%2C 73.3%25 id in 420 aa gene gene3933 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3979 YPO3980 YPO3980 glxK glxK 4482146 4483282 + putative glycerate kinase Similar to Escherichia coli glycerate kinase 1 GlxK SW:GRK1_ECOLI (P77364) (381 aa) fasta scores: E(): 0%2C 60.2%25 id in 377 aa%2C and to Haemophilus influenzae glycerate kinase GlxK SW:GRK_HAEIN (P44507) (378 aa) fasta scores: E(): 0%2C 62.6%25 id in 372 aa gene gene3934 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3980 YPO3981 YPO3981 YPO3981 4483528 4484034 - putative exported protein No significant database matches. Similar to YPO3982 (60.7%25 identity in 168 aa overlap) gene gene3935 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3981 YPO3982 YPO3982 YPO3982 4484102 4484599 - hypothetical protein Poor database matches. Similar to Caenorhabditis elegans hypothetical protein Y48d7a.1 y48d7a.1 TR:Q9N4V1 (EMBL:AC006783) (143 aa) fasta scores: E(): 3.7%2C 27.6%25 id in 134 aa. Similar to YPO3981 (60.7%25 identity in 168 aa overlap) gene gene3936 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3982 YPO3983 YPO3983 YPO3983 4484601 4485470 - conserved hypothetical protein Similar to Xylella fastidiosa hypothetical protein XF0155 TR:Q9PGZ1 (EMBL:AE003869) (295 aa) fasta scores: E(): 0%2C 42.3%25 id in 274 aa%2C and to an internal region of Saccharomyces cerevisiae transcription factor tau 138 subunit TFC3 SW:TFC3_YEAST (P34111) (1160 aa) fasta scores: E(): 2.2%2C 24.8%25 id in 222 aa. C-terminal region similar to YPO3892 (51.8%25 identity in 220 aa overlap) gene gene3937 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3983 YPO3984 YPO3984 yapE yapE 4485558 4488770 - putative autotransporter protein Previously sequenced as Yersinia pestis putative autotransporter protein YapE TR:CAC14224 (EMBL:AJ277628) (1072 aa) fasta scores: E(): 0%2C 100.0%25 id in 1070 aa. Similar to Escherichia coli antigen 43 protein Agn43A TR:Q9L6T8 (EMBL:AF233271) (1039 aa) fasta scores: E(): 1.9e-15%2C 24.7%25 id in 1073 aa gene gene3938 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3984 YPO3985 YPO3985 YPO3985 4489448 4490530 + putative membrane protein Similar to Erwinia chrysanthemi hypothetical protein YhjD SW:YHJD_ERWCH (P45417) (328 aa) fasta scores: E(): 0%2C76.8%25 id in 267 aa%2C and to Escherichia coli hypothetical protein YhjD SW:YHJD_ECOLI (P37642) (337 aa) fasta scores: E(): 0%2C 68.5%25 id in 314 aa. CDS contains extra residues at the C-terminus in comparison to other orthologues gene gene3939 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3985 YPO3986 YPO3986 cdh cdh 4490555 4491331 + CDP-diacylglycerol pyrophosphatase Similar to Escherichia coli CDP-diacylglycerol pyrophosphatase Cdh SW:CDH_ECOLI (P06282) (251 aa) fasta scores: E(): 0%2C 51.0%25 id in 243 aa%2C and to Salmonella typhimurium CDP-diacylglycerol pyrophosphatase Cdh SW:CDH_SALTY (P26219) (251 aa) fasta scores: E(): 0%2C 51.4%25 id in 249 aa gene gene3940 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3986 YPO3987 YPO3987 YPO3987 4491308 4493530 - putative exported protein Similar to Pseudomonas aeruginosa hypothetical protein PA4879 TR:AAG08264 (EMBL:AE004901) (689 aa) fasta scores: E(): 0%2C 52.2%25 id in 713 aa%2C and to Escherichia coli hypothetical protein YhjG SW:YHJG_ECOLI (P37645) (691 aa) fasta scores: E(): 0%2C 50.4%25 id in 722 aa gene gene3941 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3987 YPO3988 YPO3988 YPO3988 4493835 4494665 - conserved hypothetical protein Similar to Escherichia coli hypothetical protein YhjH SW:YHJH_ECOLI (P37646) (255 aa) fasta scores: E(): 0%2C49.4%25 id in 233 aa%2C and to C-terminal region of Rhodobacter capsulatus potential nitrogen fixation positive activator protein TR:O68072 (EMBL:AF010496) (698 aa) fasta scores: E(): 4.6e-06%2C 24.3%25 id in 267 aa. Lack of similarity at the N-terminus in comparison to the E. coli orthologue gene gene3942 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3988 YPO3989 YPO3989 YPO3989 4494899 4495099 + putative tautomerase Similar to Comamonas testosteroni 4-oxalocrotonate isomerase AphI TR:Q9RHM8 (EMBL:AB029044) (63 aa) fasta scores: E(): 0.00047%2C 41.9%25 id in 62 aa%2C and to Erwinia chrysanthemi hypothetical protein YkdK SW:YKDK_ERWCH (P45418) (73 aa) fasta scores: E(): 1.8e-19%2C 83.3%25 id in 66 aa gene gene3943 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3989 YPO3990 YPO3990 kdgK kdgK 4495378 4496322 + 2-dehydro-3-deoxygluconokinase Similar to Erwinia chrysanthemi 2-dehydro-3-deoxygluconokinase KdgK SW:KDGK_ERWCH (P45416) (310 aa) fasta scores: E(): 0%2C 76.0%25 id in 312 aa%2C and to Escherichia coli 2-dehydro-3-deoxygluconokinase KdgK SW:KDGK_ECOLI (P37647) (309 aa) fasta scores: E(): 0%2C 73.6%25 id in 311 aa gene gene3944 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3990 YPO3991 YPO3991 YPO3991 4496486 4497985 - putative insulinase family protease Similar to an internal region of Pisum sativum metalloendopeptidase TR:Q40983 (EMBL:U25111) (1259 aa) fasta scores: E(): 0.00029%2C 20.4%25 id in 446 aa%2C and the full length to Escherichia coli protein YhjJ SW:YHJJ_ECOLI (P37648) (498 aa) fasta scores: E(): 0%2C 60.6%25 id in 498 aa gene gene3945 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3991 YPO3992 YPO3992 dctA dctA 4498350 4499639 - C4-dicarboxylate transport protein Similar to Salmonella typhimurium C4-dicarboxylate transport protein DctA SW:DCTA_SALTY (P50334) (428 aa) fasta scores: E(): 0%2C 85.8%25 id in 424 aa%2C and to Escherichia coli C4-dicarboxylate transport protein DctA SW:DCTA_ECOLI (P37312) (428 aa) fasta scores: E(): 0%2C 85.4%25 id in 424 aa gene gene3946 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3992 YPO3993 YPO3993 YPO3993 4500094 4500573 - putative exported protein Similar to the C-terminal regions of Streptomyces coelicolor putative secreted protein SCF11.25 TR:Q9RK65 (EMBL:AL132662) (848 aa) fasta scores: E(): 0.0027%2C 29.2%25 id in 106 aa%2C and Streptomyces coelicolor putative secreted protein SC4G1.03 TR:CAC01535 (EMBL:AL391039) (1131 aa) fasta scores: E(): 0.12%2C 27.8%25 id in 144 aa gene gene3947 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3993 YPO3994 YPO3994 pelY pelY 4500698 4502416 - periplasmic pectate lyase precursor Similar to Yersinia pseudotuberculosis periplasmic pectate lyase precursor PelY SW:PELP_YERPS (P11278) (541 aa) fasta scores: E(): 0%2C 100.0%25 id in 538 aa%2C and to Erwinia carotovora periplasmic pectate lyase precursor PelB SW:PELP_ERWCA (P14005) (568 aa) fasta scores: E(): 0%2C 79.6%25 id in 565 aa. This CDS is 38.6%25 identical to YPO1723 (PelW) gene gene3948 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3994 YPO3995 YPO3995 YPO3995 4502662 4503366 - putative exported protein Similar to Vibrio halioticoli alginate lyase AlyVGIII TR:Q9RGQ2 (EMBL:AF114040) (235 aa) fasta scores: E(): 1.1e-12%2C 28.1%25 id in 235 aa. N-terminal region is similar to Salmonella typhimurium hypothetical protein YiiY SW:YIIY_SALTY (P43022) (134 aa) fasta scores: E(): 4.6e-11%2C38.2%25 id in 123 aa. Similar to YPO1718 (63.7%25 identity in 212 aa overlap) gene gene3949 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3995 YPO3996 YPO3996 yhjK yhjK 4504006 4506021 - putative membrane protein Similar to Escherichia coli protein YhjK SW:YHJK_ECOLI (P37649) (651 aa) fasta scores: E(): 0%2C 47.9%25 id in 653 aa. C-terminus is similar to the C-terminal region of Pseudomonas aeruginosa hypothetical protein PA4367 TR:AAG07755 (EMBL:AE004852) (687 aa) fasta scores: E(): 0%2C 29.6%25 id in 686 aa gene gene3950 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3996 YPO3998 YPO3998 YPO3998 4506338 4507449 - endoglucanase (pseudogene) Similar to Escherichia coli endoglucanase BcsC SW:GUN_ECOLI (P37651) (368 aa) fasta scores: E(): 0%2C 53.5%25 id in 370 aa%2C and to Erwinia rhapontici endoglucanase CelA TR:Q9L3G9 (EMBL:AJ276358) (333 aa) fasta scores: E(): 1e-17%2C 28.7%25 id in 362 aa. Contains a frameshift after codon 63. Frame shift occurs at a poly T heptamer. The sequence has been checked and is believed to be correct pseudogene gene3951 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3998 YPO3999 YPO3999 dppE dppE 4507553 4508560 - dipeptide transport ATP-binding protein Similar to Escherichia coli dipeptide transport ATP-binding protein DppF SW:DPPF_ECOLI (P37313) (334 aa) fasta scores: E(): 0%2C 89.5%25 id in 324 aa%2C and to Haemophilus influenzae dipeptide transport ATP-binding protein DppF SW:DPPF_HAEIN (P45094) (327 aa) fasta scores: E(): 0%2C 77.7%25 id in 318 aa gene gene3952 http://www.ncbi.nlm.nih.gov/gene/?term=YPO3999 YPO4000 YPO4000 dppD dppD 4508626 4509606 - dipeptide transport ATP-binding protein Similar to Escherichia coli dipeptide transport ATP-binding protein DppD SW:DPPD_ECOLI (P37314) (327 aa) fasta scores: E(): 0%2C 87.8%25 id in 327 aa%2C and to Pasteurella multocida dipeptide transport ATP-binding protein DppD TR:AAK02323 (EMBL:AE006058) (332 aa) fasta scores: E(): 0%2C 78.8%25 id in 325 aa gene gene3953 http://www.ncbi.nlm.nih.gov/gene/?term=YPO4000 YPO4001 YPO4001 dppC dppC 4509620 4510522 - dipeptide transport system permease protein Similar to Escherichia coli dipeptide transport system permease protein DppC SW:DPPC_ECOLI (P37315) (300 aa) fasta scores: E(): 0%2C 88.0%25 id in 300 aa%2C and to Pseudomonas aeruginosa probable permease of ABC transporter PA4504 TR:AAG07892 (EMBL:AE004864) (303 aa) fasta scores: E(): 0%2C 63.6%25 id in 283 aa gene gene3954 http://www.ncbi.nlm.nih.gov/gene/?term=YPO4001 YPO4002 YPO4002 dppB dppB 4510604 4511551 - dipeptide transport system permease protein Similar to Escherichia coli dipeptide transport system permease protein DppB SW:DPPB_ECOLI (P37316) (339 aa) fasta scores: E(): 0%2C 87.7%25 id in 309 aa%2C and to Pseudomonas aeruginosa probable permease of ABC transporter PA4503 TR:AAG07891 (EMBL:AE004864) (336 aa) fasta scores: E(): 0%2C 65.0%25 id in 309 aa gene gene3955 http://www.ncbi.nlm.nih.gov/gene/?term=YPO4002 YPO4003 YPO4003 dppA dppA 4511834 4513441 - periplasmic dipeptide transport protein Similar to Escherichia coli periplasmic dipeptide transport protein precursor DppA SW:DPPA_ECOLI (P23847) (535 aa) fasta scores: E(): 0%2C 84.9%25 id in 535 aa%2C and to Pseudomonas aeruginosa probable binding protein component of ABC transporter PA4496 TR:AAG07884 (EMBL:AE004863) (537 aa) fasta scores: E(): 0%2C 52.2%25 id in 538 aa gene gene3956 http://www.ncbi.nlm.nih.gov/gene/?term=YPO4003 YPO4004 YPO4004 YPO4004 4513844 4514092 - hypothetical protein doubtful CDS with no significant database hits gene gene3957 http://www.ncbi.nlm.nih.gov/gene/?term=YPO4004 YPO4005 YPO4005 YPO4005 4514110 4515873 - putative hemolysin activator protein Similar to Serratia marcescens hemolysin activator protein precursor ShlB SW:HLYB_SERMA (P15321) (557 aa) fasta scores: E(): 3.8e-15%2C 25.2%25 id in 472 aa%2C and to Neisseria meningitidis hemolysin activator-related protein NMB0496 TR:Q9K0S8 (EMBL:AE002406) (559 aa) fasta scores: E(): 0%2C 33.1%25 id in 556 aa. Lack of similarity at the N-terminus%2C possible alternative translational start sites gene gene3958 http://www.ncbi.nlm.nih.gov/gene/?term=YPO4005 YPO4006 YPO4006 YPO4006 4515982 4517373 - putative exported protein Similar to N-terminal regions of Alcaligenes bronchisepticus adhesin FhaB TR:Q9JP78 (EMBL:AF111796) (3634 aa) fasta scores: E(): 4.7e-14%2C 25.2%25 id in 412 aa%2Cand Neisseria meningitidis hemagglutinin/hemolysin-related protein NMB1768 TR:Q9JY30 (EMBL:AE002526) (2514 aa) fasta scores: E(): 3.6e-20%2C 31.4%25 id in 449 aa. Possible gene remnant. gene gene3959 http://www.ncbi.nlm.nih.gov/gene/?term=YPO4006 YPO4007 YPO4007 uhpC uhpC 4517879 4519210 - putative regulatory protein Similar to Escherichia coli regulatory protein UhpC SW:UHPC_ECOLI (P09836) (439 aa) fasta scores: E(): 0%2C 65.4%25 id in 437 aa%2C and to Salmonella typhimurium regulatory protein UhpC SW:UHPC_SALTY (P27669) (442 aa) fasta scores: E(): 0%2C 64.8%25 id in 437 aa gene gene3960 http://www.ncbi.nlm.nih.gov/gene/?term=YPO4007 YPO4008 YPO4008 uhpB uhpB 4519305 4520042 - two-component system%2C sensor kinase (pseudogene) Probable sensor kinase protein of a two-component system. Similar to Escherichia coli sensor protein UhpB SW:UHPB_ECOLI (P09835) (500 aa) fasta scores: E(): 0%2C 45.2%25 id in 504 aa%2C and to Salmonella typhimurium sensor protein UhpB SW:UHPB_SALTY (P27668) (500 aa) fasta scores: E(): 0%2C45.6%25 id in 502 aa. CDS is disrupted by the insertion of an IS100 element at codon 266 pseudogene gene3961 http://www.ncbi.nlm.nih.gov/gene/?term=YPO4008 YPO4009 YPO4009 ypmt1.57c ypmt1.57c 4520110 4520892 - insertion sequence IS100%2C ATP-binding protein Similar to Escherichia coli insertion sequence IS21 putative ATP-binding protein%2C IstB SW:ISTB_ECOLI (P15026) (265 aa) fasta scores: E(): 0%2C 47.4%25 id in 249 aa. Also almost identical to Yersinia pestis and Escherichia coli putative IS100 transposase ypmt1.57c TR:Q9R3L5 (EMBL:AL117211) (260 aa) fasta scores: E(): 0%2C 99.6%25 id in 260 aa. gene gene3962 http://www.ncbi.nlm.nih.gov/gene/?term=YPO4009 YPO4010 YPO4010 y1093 y1093 4520889 4521911 - transposase for insertion sequence IS100 Similar to Escherichia coli transposase for insertion sequence element IS21 IstA SW:ISTA_ECOLI (P15025) (390 aa) fasta scores: E(): 3e-27%2C 33.1%25 id in 329 aa. Identical to the previously sequenced Yersinia pestis%2CYersinia pseudotuberculosis%2C and Escherichia coli pesticin plasmid insertion sequence transposase Y1055 TR:P74993 (EMBL:U59875) (340 aa) fasta scores: E(): 0%2C 100.0%25 id in 340 aa gene gene3963 http://www.ncbi.nlm.nih.gov/gene/?term=YPO4010 YPO4011 YPO4011 YPO4011 4522713 4522778 - gene gene3970 http://www.ncbi.nlm.nih.gov/gene/?term=YPO4011 YPO4011 YPO4011 YPO4011 4522578 4522628 - gene gene3969 http://www.ncbi.nlm.nih.gov/gene/?term=YPO4011 YPO4011 YPO4011 YPO4011 4522485 4522550 - gene gene3968 http://www.ncbi.nlm.nih.gov/gene/?term=YPO4011 YPO4011 YPO4011 YPO4011 4522386 4522451 - gene gene3967 http://www.ncbi.nlm.nih.gov/gene/?term=YPO4011 YPO4011 YPO4011 YPO4011 4522176 4522226 - gene gene3965 http://www.ncbi.nlm.nih.gov/gene/?term=YPO4011 YPO4011 YPO4011 YPO4011 4522098 4522154 - gene gene3964 http://www.ncbi.nlm.nih.gov/gene/?term=YPO4011 YPO4011 YPO4011 YPO4011 4522299 4522364 - gene gene3966 http://www.ncbi.nlm.nih.gov/gene/?term=YPO4011 YPO4012 YPO4012 uhpA uhpA 4522790 4523380 - two-component system response regulator Similar to Escherichia coli transcriptional regulatory protein UhpA SW:UHPA_ECOLI (P10940) (196 aa) fasta scores: E(): 0%2C 66.5%25 id in 191 aa%2C and to Salmonella typhimurium transcriptional regulatory protein UhpA SW:UHPA_SALTY (P27667) (196 aa) fasta scores: E(): 0%2C 66.0%25 id in 191 aa. Probable response regulator protein of a two-component system gene gene3971 http://www.ncbi.nlm.nih.gov/gene/?term=YPO4012 YPO4013 YPO4013 yhjW yhjW 4523496 4525187 - putative membrane protein Similar to Escherichia coli membrane-protein YhjW SW:YHJW_ECOLI (P37661) (574 aa) fasta scores: E(): 0%2C 63.4%25 id in 555 aa%2C and to Pseudomonas aeruginosa hypothetical protein PAa3310 TR:AAG06698 (EMBL:AE004753) (551 aa) fasta scores: E(): 1.5e-27%2C 27.6%25 id in 572 aa gene gene3972 http://www.ncbi.nlm.nih.gov/gene/?term=YPO4013 YPO4014 YPO4014 YPO4014 4525716 4527179 - putative membrane protein No significant database matches to the full length CDS. Internal region of the CDS is similar to Streptomyces coelicolor putative esterase/lipase SC6E10.17 TR:Q9S2M1 (EMBL:AL109661) (267 aa) fasta scores: E(): 0.00068%2C 29.4%25 id in 163 aa. N-terminal region similar to N-terminus of Arabidopsis thaliana lysophospholipase-like protein T22P22_40 TR:Q9LYG5 (EMBL:AL163814) (390 aa) fasta scores: E(): 1.4%2C 22.3%25 id in 354 aa gene gene3973 http://www.ncbi.nlm.nih.gov/gene/?term=YPO4014 YPO4015 YPO4015 YPO4015 4527647 4529050 - amino acid permease Similar to Salmonella typhimurium proline-specific permease ProY SW:PROY_SALTY (P37460) (456 aa) fasta scores: E(): 0%2C 61.9%25 id in 446 aa%2C and to Pseudomonas putida inducible histidine transporter HutT TR:O31199 (EMBL:AF032970) (467 aa) fasta scores: E(): 0%2C 74.4%25 id in 445 aa. Similar to YPO3201 (61.5%25 identity in 442 aa overlap) gene gene3974 http://www.ncbi.nlm.nih.gov/gene/?term=YPO4015 YPO4016 YPO4016 hutH hutH 4529468 4531000 - histidine ammonia-lyase Similar to Pseudomonas putida histidine ammonia-lyase HutH SW:HUTH_PSEPU (P21310) (509 aa) fasta scores: E(): 0%2C 78.3%25 id in 507 aa%2C and to Pseudomonas aeruginosa histidine ammonia-lyase HutH TR:AAG08483 (EMBL:AE004922) (509 aa) fasta scores: E(): 0%2C 78.0%25 id in 508 aa gene gene3975 http://www.ncbi.nlm.nih.gov/gene/?term=YPO4016 YPO4017 YPO4017 hutU hutU 4530997 4532688 - urocanate hydratase Similar to Pseudomonas putida urocanate hydratase HutU SW:HUTU_PSEPU (P25080) (556 aa) fasta scores: E(): 0%2C87.2%25 id in 554 aa%2C and to Pseudomonas aeruginosa urocanase HutU or pa5100 TR:AAG08485 (EMBL:AE004923) (559 aa) fasta scores: E(): 0%2C 87.6%25 id in 557 aa gene gene3976 http://www.ncbi.nlm.nih.gov/gene/?term=YPO4017 YPO4018 YPO4018 cysM cysM 4533415 4534359 + pyridoxal-phosphate dependent protein Similar to Streptococcus suis O-acetylserine lyase CysM TR:Q9RHP9 (EMBL:AB028865) (308 aa) fasta scores: E(): 1e-23%2C 30.8%25 id in 302 aa%2C and to Methanosarcina barkeri O-acetylserine (thiol)-lyase-A related protein CysK TR:Q9UWP0 (EMBL:AF174138) (308 aa) fasta scores: E(): 3.7e-26%2C 33.6%25 id in 301 aa gene gene3977 http://www.ncbi.nlm.nih.gov/gene/?term=YPO4018 YPO4019 YPO4019 YPO4019 4534356 4534922 + putative phosphoribosyl transferase protein Similar to Bacillus subtilis xanthine phosphoribosyltransferase Xpt SW:XPT_BACSU (P42085) (194 aa) fasta scores: E(): 0.00092%2C 26.8%25 id in 190 aa%2C and to Methanococcus jannaschii adenine phosphoribosyltransferase Apt SW:APT_METJA (Q59049) (183 aa) fasta scores: E(): 1.2e-19%2C 39.7%25 id in 179 aa gene gene3978 http://www.ncbi.nlm.nih.gov/gene/?term=YPO4019 YPO4020 YPO4020 YPO4020 4535005 4535934 + putative membrane protein Poor database matches. Similar to Bacillus subtilis hypothetical protein in YyaM SW:YYAM_BACSU (P37511) (305 aa) fasta scores: E(): 0.0031%2C 23.4%25 id in 295 aa%2C and to Clostridium kluyveri hypothetical protein SW:YCAY_CLOKL (P38943) (311 aa) fasta scores: E(): 0.015%2C 22.7%25 id in 313 aa gene gene3979 http://www.ncbi.nlm.nih.gov/gene/?term=YPO4020 YPO4021 YPO4021 YPO4021 4535936 4537180 + hypothetical protein no significant database hits to the full length CDS. Similar to an internal region of Rhizobium sp hypothetical protein Y4rH SW:Y4RH_RHISN (P55641) (478 aa) fasta scores: E(): 1.8e-06%2C 23.4%25 id in 423 aa. N-terminal region similar to N-terminus of Streptomyces tendae nikkomycin biosynthesis protein%2C putative carboxylase NikS TR:CAC11141 (EMBL:AJ250581) (424 aa) fasta scores: E(): 0.00024%2C 26.6%25 id in 289 aa gene gene3980 http://www.ncbi.nlm.nih.gov/gene/?term=YPO4021 YPO4022 YPO4022 YPO4022 4537703 4538656 + putative iron transport protein Probable siderophore-binding protein. Similar to Vibrio anguillarum ferric anguibactin-binding protein FatB SW:FATB_VIBAN (P11460) (322 aa) fasta scores: E(): 2.6e-26%2C31.8%25 id in 305 aa%2C and to Bacillus subtilis ferric anguibactin-binding protein YclQ TR:P94421 (EMBL:D50453) (317 aa) fasta scores: E(): 0%2C 36.1%25 id in 319 aa gene gene3981 http://www.ncbi.nlm.nih.gov/gene/?term=YPO4022 YPO4023 YPO4023 YPO4023 4538666 4539625 + putative iron transport permease Similar to Vibrio anguillarum ferric anguibactin transport system permease protein FatD SW:FATD_VIBAN (P37738) (314 aa) fasta scores: E(): 0%2C 35.6%25 id in 306 aa%2Cand to Neisseria meningitidis putative inner membrane transport protein NMA0451 TR:Q9JWC0 (EMBL:AL162753) (322 aa) fasta scores: E(): 0%2C 49.4%25 id in 312 aa%2C and to Staphylococcus aureus iron transport membrane protein SstA TR:O87825 (EMBL:AJ005352) (323 aa) fasta scores: E(): 0%2C40.0%25 id in 310 aa gene gene3982 http://www.ncbi.nlm.nih.gov/gene/?term=YPO4023 YPO4024 YPO4024 YPO4024 4539615 4540622 + putative iron transport permease Similar to Vibrio anguillarum ferric anguibactin transport system permease protein FatC SW:FATC_VIBAN (P37737) (317 aa) fasta scores: E(): 0%2C 31.7%25 id in 306 aa%2Cand to Neisseria meningitidis putative inner membrane transport protein NMA0450 TR:Q9JWC1 (EMBL:AL162753) (315 aa) fasta scores: E(): 0%2C 43.0%25 id in 293 aa%2C and to Staphylococcus aureus iron transport membrane protein SstB TR:O87826 (EMBL:AJ005352) (226 aa) fasta scores: E(): 4.9e-25%2C 33.5%25 id in 224 aa gene gene3983 http://www.ncbi.nlm.nih.gov/gene/?term=YPO4024 YPO4025 YPO4025 YPO4025 4540619 4541377 + putative iron ABC transporter%2C ATP-binding protein Similar to Escherichia coli ferrichrome transport ATP-binding protein FhuC SW:FHUC_ECOLI (P07821) (265 aa) fasta scores: E(): 9.2e-28%2C 37.0%25 id in 238 aa%2C and to Bacillus subtilis possible iron dicitrate transport ATP-binding protein YclP TR:P94420 (EMBL:D50453) (252 aa) fasta scores: E(): 0%2C 53.4%25 id in 251 aa gene gene3984 http://www.ncbi.nlm.nih.gov/gene/?term=YPO4025 YPO4026 YPO4026 YPO4026 4541377 4541958 - conserved hypothetical protein (partial) Probable gene remnant. Similar to internal region of Wolbachia sp wKue bacteriophage WO Gp8 protein TR:Q9JMN3 (EMBL:AB036666) (339 aa) fasta scores: E(): 7.2e-27%2C 45.6%25 id in 193 aa. C-terminus similar to N-terminal region of Salmonella typhimurium pathogenicity island (SPI-3) protein RhuM TR:Q9Z627 (EMBL:AF106566) (215 aa) fasta scores: E(): 0%2C 81.1%25 id in 122 aa%3B~was marked partial gene gene3985 http://www.ncbi.nlm.nih.gov/gene/?term=YPO4026 YPO4028 YPO4028 YPO4028 4543227 4543589 + putative regulator Similar to Xylella fastidiosa hypothetical protein XF0534 TR:Q9PFX2 (EMBL:AE003901) (114 aa) fasta scores: E(): 0.0036%2C 30.5%25 id in 118 aa. Similar to YPO0883 (97.5%25 identity in 120 aa overlap) gene gene3986 http://www.ncbi.nlm.nih.gov/gene/?term=YPO4028 YPO4029 YPO4029 YPO4029 4543628 4544560 + IS903 transposase (pseudogene) Similar to Bacteriophage HK022 IS903 transposase TR:Q9MCT5 (EMBL:AF069308) (307 aa) fasta scores: E(): 0%2C69.6%25 id in 306 aa%2C and to Escherichia coli coli transposable element variant IS903.B present on kanamycin resistance transposon Tn 2680 TR:Q48346 (EMBL:X02527) (307 aa) fasta scores: E(): 0%2C 69.6%25 id in 306 aa. Contains several frameshifts%2C degenerate CDS pseudogene gene3987 http://www.ncbi.nlm.nih.gov/gene/?term=YPO4029 YPO4031 YPO4031 YPO4031 4544734 4544979 + putative regulatory protein Similar to the N-terminal regions of Serratia marcescens transcriptional activator RegC TR:Q54424 (EMBL:U31763) (75 aa) fasta scores: E(): 1.5e-12%2C 57.4%25 id in 61 aa%2C and Rahnella aquatilis positive levansucrase regulator LsrS TR:O87909 (EMBL:U91484) (70 aa) fasta scores: E(): 1.4e-15%2C 67.2%25 id in 58 aa%2C and to Bacteriophage 186 late control protein B SW:VPB_BP186 (P08711) (72 aa) fasta scores: E(): 3.3e-12%2C 54.4%25 id in 57 aa. Orthologues contain lower levels of similartiy in the C-terminal regions gene gene3988 http://www.ncbi.nlm.nih.gov/gene/?term=YPO4031 YPO4032 YPO4032 YPO4032 4545247 4546554 - hypothetical protein no significant database hits. CDS DNA has a low G+C content%2C 31.03%25 gene gene3989 http://www.ncbi.nlm.nih.gov/gene/?term=YPO4032 YPO4033 YPO4033 YPO4033 4546613 4547806 - putative phage integrase Similar to Escherichia coli CP4-like integrase Int TR:O85610 (EMBL:AF071034) (393 aa) fasta scores: E(): 0%2C71.2%25 id in 386 aa%2C and to Bacteriophage SF6 integrase Int SW:VINT_BPSF6 (P37317) (385 aa) fasta scores: E(): 0%2C 48.0%25 id in 383 aa. Similar to YPO0887 (62.4%25 identity in 386 aa overlap) gene gene3990 http://www.ncbi.nlm.nih.gov/gene/?term=YPO4033 YPO4034 YPO4034 YPO4034 4548192 4549385 - putative AraC-family transcriptional regulatory protein N-terminus similar to Bacillus subtilis catabolite control protein A CcpA SW:CCPA_BACSU (P25144) (334 aa) fasta scores: E(): 8.7e-06%2C 23.8%25 id in 281 aa Full length CDS similar to Escherichia coli xylose operon regulatory protein XylR SW:XYLR_ECOLI (P37390) (392 aa) fasta scores: E(): 0%2C 79.7%25 id in 395 aa gene gene3991 http://www.ncbi.nlm.nih.gov/gene/?term=YPO4034 YPO4035 YPO4035 YPO4035 4549475 4550659 - sugar transport system permease protein Similar to Escherichia coli ribose transport system permease protein RbsC SW:RBSC_ECOLI (P04984) (321 aa) fasta scores: E(): 1.4e-22%2C 36.8%25 id in 356 aa%2C and to Escherichia coli xylose transport system permease protein XylH SW:XYLH_ECOLI (P37389) (393 aa) fasta scores: E(): 0%2C84.6%25 id in 395 aa gene gene3992 http://www.ncbi.nlm.nih.gov/gene/?term=YPO4035 YPO4036 YPO4036 YPO4036 4550646 4552178 - sugar transport ATP-binding protein Similar to Escherichia coli galactoside transport ATP-binding protein MglA SW:MGLA_ECOLI (P23199) (506 aa) fasta scores: E(): 0%2C 41.7%25 id in 499 aa%2C and to Escherichia coli D-xylose transport ATP-binding protein XylG SW:XYLG_ECOLI (P37388) (513 aa) fasta scores: E(): 0%2C78.7%25 id in 508 aa gene gene3993 http://www.ncbi.nlm.nih.gov/gene/?term=YPO4036 YPO4037 YPO4037 YPO4037 4552386 4553381 - sugar-binding periplasmic protein Similar to Agrobacterium tumefaciens multiple sugar-binding periplasmic receptor ChvE SW:CVE1_AGRTU (P25548) (354 aa) fasta scores: E(): 3.6e-19%2C 36.0%25 id in 350 aa%2C and to Escherichia coli D-xylose-binding periplasmic protein precursor XylF SW:XYLF_ECOLI (P37387) (330 aa) fasta scores: E(): 0%2C 82.1%25 id in 330 aa gene gene3994 http://www.ncbi.nlm.nih.gov/gene/?term=YPO4037 YPO4038 YPO4038 xylA xylA 4553844 4555163 + xylose isomerase Similar to Escherichia coli xylose isomerase XylA SW:XYLA_ECOLI (P00944) (440 aa) fasta scores: E(): 0%2C 85.4%25 id in 438 aa%2C and to Klebsiella pneumoniae xylose isomerase XylA SW:XYLA_KLEPN (P29442) (440 aa) fasta scores: E(): 0%2C84.2%25 id in 438 aa gene gene3995 http://www.ncbi.nlm.nih.gov/gene/?term=YPO4038 YPO4039 YPO4039 xylB xylB 4555287 4556741 + xylulose kinase Similar to Escherichia coli xylulose kinase XylB SW:XYLB_ECOLI (P09099) (484 aa) fasta scores: E(): 0%2C 72.0%25 id in 482 aa%2C and to Klebsiella pneumoniae xylulose kinase XylB SW:XYLB_KLEPN (P29444) (483 aa) fasta scores: E(): 0%2C66.4%25 id in 482 aa gene gene3996 http://www.ncbi.nlm.nih.gov/gene/?term=YPO4039 YPO4040 YPO4040 YPO4040 4556859 4557845 - putative exported protein Similar to Escherichia coli hypothetical protein YbgO SW:YBGO_ECOLI (P75748) (353 aa) fasta scores: E(): 7.7e-20%2C 31.9%25 id in 348 aa%2C and to Escherichia coli hypothetical protein YqiI SW:YQII_ECOLI (P76656) (354 aa) fasta scores: E(): 1e-11%2C 26.7%25 id in 352 aa gene gene3997 http://www.ncbi.nlm.nih.gov/gene/?term=YPO4040 YPO4041 YPO4041 YPO4041 4557884 4558651 - putative fimbrial chaperone Similar to Proteus mirabilis fimbrial chaperone MrpD TR:Q51905 (EMBL:Z32686) (252 aa) fasta scores: E(): 0%2C44.9%25 id in 247 aa%2C and to Escherichia coli hypothetical fimbrial chaperone YbgP SW:YBGP_ECOLI (P75749) (242 aa) fasta scores: E(): 0%2C 47.1%25 id in 238 aa gene gene3998 http://www.ncbi.nlm.nih.gov/gene/?term=YPO4041 YPO4042 YPO4042 YPO4042 4558744 4561234 - fimbrial usher protein (pseudogene) Similar to Proteus mirabilis usher protein MrpC TR:Q51904 (EMBL:Z32686) (871 aa) fasta scores: E(): 0%2C40.6%25 id in 844 aa%2C and to Escherichia coli hypothetical outer membrane usher protein YqiG SW:YQIG_ECOLI (P76655) (821 aa) fasta scores: E(): 0%2C 44.3%25 id in 804 aa. Contains frameshifts after codons 593 and 619. The sequence has been checked and is believed to be correct pseudogene gene3999 http://www.ncbi.nlm.nih.gov/gene/?term=YPO4042 YPO4044 YPO4044 YPO4044 4561310 4561867 - fimbrial protein Similar to Salmonella typhimurium long polar fimbria protein A LpfA SW:LPFA_SALTY (P43660) (178 aa) fasta scores: E(): 3.4e-11%2C 32.8%25 id in 186 aa%2C and to Escherichia coli hypothetical fimbrial-like protein YbgD SW:YBGD_ECOLI (P37909) (188 aa) fasta scores: E(): 3.7e-15%2C39.5%25 id in 190 aa gene gene4000 http://www.ncbi.nlm.nih.gov/gene/?term=YPO4044 YPO4045 YPO4045 YPO4045 4562749 4563741 - putative membrane protein Similar to Escherichia coli hypothetical protein YiaH SW:YIAH_ECOLI (P37669) (331 aa) fasta scores: E(): 0%2C58.0%25 id in 331 aa%2C and to Rickettsia prowazekii hypothetical protein RP338 TR:Q9ZDJ0 (EMBL:AJ235271) (347 aa) fasta scores: E(): 1.2e-11%2C 25.1%25 id in 339 aa gene gene4001 http://www.ncbi.nlm.nih.gov/gene/?term=YPO4045 YPO4046 YPO4046 YPO4046 4564104 4564619 + insertion element IS1661 DNA-binding protein Similar to Escherichia coli insertion element IS1397 OrfA hypothetical 20.1 kDa protein SW:YI9A_ECOLI (Q47309) (173 aa) fasta scores: E(): 2.3e-20%2C 39.6%25 id in 169 aa gene gene4002 http://www.ncbi.nlm.nih.gov/gene/?term=YPO4046 YPO4047 YPO4047 YPO4047 4564673 4565458 + transposase for insertion sequence IS1661 Similar to Escherichia coli insertion sequence IS1397 transposase%2C OrfB TR:Q47310 (EMBL:X92970) (240 aa) fasta scores: E(): 0%2C 53.0%25 id in 234 aa gene gene4003 http://www.ncbi.nlm.nih.gov/gene/?term=YPO4047 YPO4048 YPO4048 cmr cmr 4565931 4567160 + multidrug translocase Similar to Escherichia coli multidrug translocase MdfA SW:MDFA_ECOLI (Q46966) (410 aa) fasta scores: E(): 0%2C73.0%25 id in 400 aa%2C and to Escherichia coli hypothetical protein YjiO SW:YJIO_ECOLI (P39386) (410 aa) fasta scores: E(): 0%2C 43.2%25 id in 377 aa gene gene4004 http://www.ncbi.nlm.nih.gov/gene/?term=YPO4048 YPO4049 YPO4049 YPO4049 4567870 4568451 + putative membrane protein No significant database matches to the full length CDS. Similar to an internal region of Escherichia coli O157:H7 hypothetical protein Z4810 TR:AAG58551 (EMBL:AE005568) (303 aa) fasta scores: E(): 0.0042%2C 25.4%25 id in 236 aa gene gene4005 http://www.ncbi.nlm.nih.gov/gene/?term=YPO4049 YPO4050 YPO4050 YPO4050 4568465 4568797 - putative membrane protein Poor database matches%2C similar to C-terminal region of Saccharomyces cerevisiae chromosome XVI hypothetical protein YPL200w TR:Q08955 (EMBL:Z73556) (156 aa) fasta scores: E(): 0.8%2C 24.0%25 id in 104 aa gene gene4006 http://www.ncbi.nlm.nih.gov/gene/?term=YPO4050 YPO4051 YPO4051 tnpA tnpA 4569065 4569550 + transposase (partial) Probable gene remnant. Similar to internal regions of Yersinia pestis plasmid pCD1 transposase TnpA TR:O68711 (EMBL:AF053946) (771 aa) fasta scores: E(): 0%2C 86.6%25 id in 134 aa%2C and Pseudomonas sp BW13 transposase TnpA TR:CAC14717 (EMBL:Y17830) (1001 aa) fasta scores: E(): 0%2C86.2%25 id in 138 aa%3B~was marked partial gene gene4007 http://www.ncbi.nlm.nih.gov/gene/?term=YPO4051 YPO4052 YPO4052 fdhA fdhA 4569557 4571510 - selenocysteine-specific elongation factor (pseudogene) Similar to Escherichia coli selenocysteine-specific elongation factor SelB SW:SELB_ECOLI (P14081) (614 aa) fasta scores: E(): 0%2C 59.4%25 id in 646 aa%2C and to Haemophilus influenzae selenocysteine-specific elongation factor SelB SW:SELB_HAEIN (P43927) (619 aa) fasta scores: E(): 0%2C 44.5%25 id in 650 aa. Contains a frameshift after codon 71. Frame shift occurs at a poly G decamer. The sequence has been checked and is believed to be correct pseudogene gene4008 http://www.ncbi.nlm.nih.gov/gene/?term=YPO4052 YPO4054 YPO4054 fdhA fdhA 4571507 4572895 - L-seryl-tRNA selenium transferase Similar to Escherichia coli L-seryl-tRNA selenium transferase SelA SW:SELA_ECOLI (P23328) (463 aa) fasta scores: E(): 0%2C 69.2%25 id in 461 aa%2C and to Haemophilus influenzae L-seryl-tRNA selenium transferase SelA SW:SELA_HAEIN (P43910) (461 aa) fasta scores: E(): 0%2C 55.4%25 id in 457 aa gene gene4009 http://www.ncbi.nlm.nih.gov/gene/?term=YPO4054 YPO4055 YPO4055 fdhE fdhE 4573079 4574008 - putative formate dehydrogenase formation protein Similar to Escherichia coli formate dehydrogenase formation protein FdhE SW:FDHE_ECOLI (P13024) (309 aa) fasta scores: E(): 0%2C 68.9%25 id in 309 aa%2C and to Haemophilus influenzae formate dehydrogenase formation protein FdhE SW:FDHE_HAEIN (P44452) (302 aa) fasta scores: E(): 0%2C 50.8%25 id in 309 aa gene gene4010 http://www.ncbi.nlm.nih.gov/gene/?term=YPO4055 YPO4056 YPO4056 fdoI fdoI 4574008 4574682 - formate dehydrogenase%2C cytochrome b556 protein Similar to Escherichia coli formate dehydrogenase%2Ccytochrome b556 protein FdoI SW:FDOI_ECOLI (P32174) (211 aa) fasta scores: E(): 0%2C 79.5%25 id in 210 aa%2C and to Haemophilus influenzae formate dehydrogenase%2C cytochrome b556 protein FdxI SW:FDXI_HAEIN (P44451) (238 aa) fasta scores: E(): 0%2C 50.0%25 id in 202 aa gene gene4011 http://www.ncbi.nlm.nih.gov/gene/?term=YPO4056 YPO4057 YPO4057 fdoH fdoH 4574679 4575650 - formate dehydrogenase-O%2C iron-sulfur subunit Similar to Escherichia coli formate dehydrogenase-O%2Ciron-sulfur subunit FdoH SW:FDOH_ECOLI (P32175) (300 aa) fasta scores: E(): 0%2C 86.3%25 id in 292 aa%2C and to Escherichia coli formate dehydrogenase%2C nitrate-inducible%2Ciron-sulfur subunit FdnH SW:FDNH_ECOLI (P24184) (294 aa) fasta scores: E(): 0%2C 78.2%25 id in 293 aa gene gene4012 http://www.ncbi.nlm.nih.gov/gene/?term=YPO4057 YPO4058 YPO4058 fdoG fdoG 4575666 4578710 - formate dehydrogenase-O%2C major subunit (pseudogene) Similar to Escherichia coli formate dehydrogenase-O%2Cmajor subunit FdoG SW:FDOG_ECOLI (P32176) (1016 aa) fasta scores: E(): 0%2C 85.7%25 id in 1016 aa%2C and to Escherichia coli formate dehydrogenase%2C nitrate-inducible%2C major subunit FdnG SW:FDNG_ECOLI (P24183) (1015 aa) fasta scores: E(): 0%2C 78.4%25 id in 1014 aa. Contains a nonsense mutation (opal) at codon 196. The sequence has been checked and is believed to be correct. The E. coli protein also contains an opal codon at the same position%2C but the active site selenocysteine is incorporated by the selenocysteine tRNA pseudogene gene4013 http://www.ncbi.nlm.nih.gov/gene/?term=YPO4058 YPO4060 YPO4060 fdhD fdhD 4578907 4579731 + putative formate dehydrogenase Similar to Wolinella succinogenes formate dehydrogenase protein FdhD SW:FDHD_WOLSU (P28181) (286 aa) fasta scores: E(): 8.5e-18%2C 30.8%25 id in 250 aa%2C and to Escherichia coli protein necessary for nitrate inducible formate dehydrogenase activity FdhD SW:FDHD_ECOLI (P32177) (277 aa) fasta scores: E(): 0%2C 71.3%25 id in 275 aa gene gene4014 http://www.ncbi.nlm.nih.gov/gene/?term=YPO4060 YPO4061 YPO4061 sodA sodA 4580167 4580790 + superoxide dismutase [Mn] Similar to Yersinia enterocolitica superoxide dismutase [Mn] SodA SW:SODM_YEREN (P53655) (207 aa) fasta scores: E(): 0%2C 97.6%25 id in 207 aa%2C and to Escherichia coli superoxide dismutase [Mn] SodA SW:SODM_ECOLI (P00448) (205 aa) fasta scores: E(): 0%2C 85.0%25 id in 206 aa gene gene4015 http://www.ncbi.nlm.nih.gov/gene/?term=YPO4061 YPO4062 YPO4062 cheM cheM 4581134 4583083 + methyl-accepting chemotaxis protein II Similar to the C-terminal regions of Escherichia coli methyl-accepting chemotaxis protein II Tar SW:MCP2_ECOLI (P07017) (553 aa) fasta scores: E(): 0%2C 46.8%25 id in 530 aa%2C and Salmonella typhimurium methyl-accepting chemotaxis protein II Tar SW:MCP2_SALTY (P02941) (553 aa) fasta scores: E(): 0%2C 46.3%25 id in 525 aa gene gene4016 http://www.ncbi.nlm.nih.gov/gene/?term=YPO4062 YPO4063 YPO4063 YPO4063 4583273 4583605 + putative membrane protein No significant database matches gene gene4017 http://www.ncbi.nlm.nih.gov/gene/?term=YPO4063 YPO4064 YPO4064 YPO4064 4584161 4584613 + hypothetical protein Similar to C-terminal regions of Streptomyces coelicolor putative secreted protein SCJ1.02C TR:Q9RJ12 (EMBL:AL109962) (195 aa) fasta scores: E(): 0.00066%2C 25.6%25 id in 133 aa%2C and Actinosynnema pretiosum hypothetical protein TR:O69206 (EMBL:U33059) (190 aa) fasta scores: E(): 2.1%2C 27.0%25 id in 148 aa gene gene4018 http://www.ncbi.nlm.nih.gov/gene/?term=YPO4064 YPO4065 YPO4065 YPO4065 4584782 4585138 - conserved hypothetical protein Similar to Escherichia coli hypothetical protein YibL SW:YIBL_ECOLI (P36564) (120 aa) fasta scores: E(): 2.9e-21%2C 61.2%25 id in 116 aa%2C and to the C-terminus of Vibrio cholerae hypothetical protein VCA0010 TR:Q9KNF4 (EMBL:AE004344) (145 aa) fasta scores: E(): 5.7e-10%2C 33.1%25 id in 118 aa gene gene4019 http://www.ncbi.nlm.nih.gov/gene/?term=YPO4065 YPO4066 YPO4066 mtlR mtlR 4585387 4585941 - mannitol operon repressor Similar to C-terminal regions of Escherichia coli mannitol operon repressor MtlR SW:MTLR_ECOLI (P36563) (195 aa) fasta scores: E(): 0%2C 77.5%25 id in 173 aa%2C and Klebsiella pneumoniae Mtl operon repressor MtlR TR:Q9XBM5 (EMBL:AF166095) (198 aa) fasta scores: E(): 0%2C 75.7%25 id in 181 aa. CDS appears to be truncated at the N-terminus in comparison to other orthologues. Effect on function not known gene gene4020 http://www.ncbi.nlm.nih.gov/gene/?term=YPO4066 YPO4067 YPO4067 mtlD mtlD 4586148 4587311 - mannitol-1-phosphate 5-dehydrogenase Similar to Klebsiella pneumoniae mannitol-1-phosphate 5-dehydrogenase MtlD SW:MTLD_KLEPN (Q9XBM6) (382 aa) fasta scores: E(): 0%2C 76.6%25 id in 380 aa%2Cand to Escherichia coli mannitol-1-phosphate 5-dehydrogenase MtlD SW:MTLD_ECOLI (P09424) (382 aa) fasta scores: E(): 0%2C 75.7%25 id in 382 aa gene gene4021 http://www.ncbi.nlm.nih.gov/gene/?term=YPO4067 YPO4068 YPO4068 mtlA mtlA 4587448 4589379 - PTS system%2C mannitol-specific IIABC component Similar to Escherichia coli PTS system%2Cmannitol-specific IIABC component MtlA SW:PTMA_ECOLI (P00550) (637 aa) fasta scores: E(): 0%2C 81.7%25 id in 638 aa%2Cand to Klebsiella pneumoniae PTS system%2C mannitol-specific IIABC component MtlA SW:PTMA_KLEPN (Q9XBM7) (635 aa) fasta scores: E(): 0%2C 81.1%25 id in 635 aa gene gene4022 http://www.ncbi.nlm.nih.gov/gene/?term=YPO4068 YPO4070 YPO4070 yiaF yiaF 4590029 4590754 - putative exported protein Similar to the C-terminus of Escherichia coli hypothetical protein YiaF SW:YIAF_ECOLI (P37667) (276 aa) fasta scores: E(): 0%2C 50.4%25 id in 228 aa gene gene4023 http://www.ncbi.nlm.nih.gov/gene/?term=YPO4070 YPO4071 YPO4071 glyS glyS 4591221 4593290 - glycyl-tRNA synthetase beta subunit Similar to Escherichia coli glycyl-tRNA synthetase beta chain subunit GlyS SW:SYGB_ECOLI (P00961) (688 aa) fasta scores: E(): 0%2C 85.6%25 id in 688 aa%2C and to Haemophilus influenzae glycyl-tRNA synthetase beta chain subunit GlyS SW:SYGB_HAEIN (P43822) (688 aa) fasta scores: E(): 0%2C 68.9%25 id in 689 aa gene gene4024 http://www.ncbi.nlm.nih.gov/gene/?term=YPO4071 YPO4072 YPO4072 glyQ glyQ 4593300 4594214 - glycyl-tRNA synthetase alpha subunit Similar to Escherichia coli glycyl-tRNA synthetase alpha subunit GlyQ SW:SYGA_ECOLI (P00960) (303 aa) fasta scores: E(): 0%2C 93.7%25 id in 303 aa%2C and to Vibrio cholerae glycyl-tRNA synthetase alpha subunit GlyQ TR:Q9KVW7 (EMBL:AE004094) (330 aa) fasta scores: E(): 0%2C 88.8%25 id in 303 aa gene gene4025 http://www.ncbi.nlm.nih.gov/gene/?term=YPO4072 YPO4074 YPO4074 tag tag 4594542 4595114 + DNA-3-methyladenine glycosylase Similar to Escherichia coli DNA-3-methyladenine glycosylase I Tag SW:3MG1_ECOLI (P05100) (187 aa) fasta scores: E(): 0%2C 69.7%25 id in 185 aa%2C and to Haemophilus influenzae DNA-3-methyladenine glycosylase Tag SW:3MGA_HAEIN (P44321) (185 aa) fasta scores: E(): 0%2C 61.5%25 id in 179 aa gene gene4026 http://www.ncbi.nlm.nih.gov/gene/?term=YPO4074 YPO4075 YPO4075 YPO4075 4595111 4595566 + putative acetyltransferase Similar to Escherichia coli hypothetical protein YiaC SW:YIAC_ECOLI (P37664) (146 aa) fasta scores: E(): 9.9e-23%2C 43.2%25 id in 146 aa%2C and to Pseudomonas aeruginosa probable acetyltransferase PA0249 TR:AAG03638 (EMBL:AE004463) (148 aa) fasta scores: E(): 7.7e-13%2C 36.9%25 id in 130 aa gene gene4027 http://www.ncbi.nlm.nih.gov/gene/?term=YPO4075 YPO4076 YPO4076 yiaD yiaD 4595924 4596583 + putative lipoprotein Similar to Escherichia coli hypothetical lipoprotein YiaD SW:YIAD_ECOLI (P37665) (219 aa) fasta scores: E(): 0%2C77.6%25 id in 219 aa%2C and to Shewanella violacea hypothetical protein TR:Q9S0K6 (EMBL:AB033988) (220 aa) fasta scores: E(): 0%2C 58.2%25 id in 220 aa gene gene4028 http://www.ncbi.nlm.nih.gov/gene/?term=YPO4076 YPO4077 YPO4077 YPO4077 4596714 4597358 - conserved hypothetical protein Similar to Vibrio cholerae hypothetical protein VC2666 TR:Q9KNR5 (EMBL:AE004332) (205 aa) fasta scores: E(): 1.1e-24%2C 40.2%25 id in 199 aa%2C and to Deinococcus radiodurans conserved hypothetical protein DR0999 TR:Q9RVM8 (EMBL:AE001952) (225 aa) fasta scores: E(): 8.8e-14%2C 30.0%25 id in 210 aa gene gene4029 http://www.ncbi.nlm.nih.gov/gene/?term=YPO4077 YPO4078 YPO4078 YPO4078 4597877 4598857 + putative D-isomer specific 2-hydroxyacid dehydrogenase Similar to Escherichia coli probable 2-hydroxyacid dehydrogenase YiaE SW:YIAE_ECOLI (P37666) (324 aa) fasta scores: E(): 0%2C 71.1%25 id in 322 aa%2C and to Bacillus subtilis hypothetical protein YvcT TR:O32264 (EMBL:Z99121) (325 aa) fasta scores: E(): 0%2C 46.4%25 id in 321 aa gene gene4030 http://www.ncbi.nlm.nih.gov/gene/?term=YPO4078 YPO4080 YPO4080 malS malS 4599146 4601209 + alpha-amylase protein Similar to Escherichia coli alpha-amylase protein MalS SW:AMY1_ECOLI (P25718) (676 aa) fasta scores: E(): 0%2C70.1%25 id in 680 aa%2C and to Klebsiella pneumoniae maltohexaose-producing amylase TR:Q9RHR1 (EMBL:AB026834) (677 aa) fasta scores: E(): 0%2C 68.9%25 id in 687 aa gene gene4031 http://www.ncbi.nlm.nih.gov/gene/?term=YPO4080 YPO4081 YPO4081 YPO4081 4601624 4602067 + putative membrane protein Poor database matches gene gene4032 http://www.ncbi.nlm.nih.gov/gene/?term=YPO4081 YPO4082 YPO4082 avtA avtA 4602522 4603787 + valine--pyruvate aminotransferase Similar to Escherichia coli valine--pyruvate aminotransferase AvtA SW:AVTA_ECOLI (P09053) (417 aa) fasta scores: E(): 0%2C 79.1%25 id in 416 aa%2C and to Vibrio cholerae valine-pyruvate aminotransferase VC0019 TR:Q9KVW9 (EMBL:AE004094) (418 aa) fasta scores: E(): 0%2C 63.2%25 id in 416 aa gene gene4033 http://www.ncbi.nlm.nih.gov/gene/?term=YPO4082 YPO4083 YPO4083 yidE yidE 4603900 4605558 - putative membrane protein Similar to Escherichia coli hypothetical protein YidE SW:YIDE_ECOLI (P29211) (553 aa) fasta scores: E(): 0%2C75.0%25 id in 552 aa%2C and to Haemophilus influenzae hypothetical protein HI0035 SW:YIDE_HAEIN (P44472) (551 aa) fasta scores: E(): 0%2C 65.6%25 id in 550 aa gene gene4034 http://www.ncbi.nlm.nih.gov/gene/?term=YPO4083 YPO4084 YPO4084 hslS hslS 4605931 4606395 - heat shock protein Similar to Escherichia coli heat shock protein B IbpB SW:IBPB_ECOLI (P29210) (142 aa) fasta scores: E(): 0%2C59.9%25 id in 147 aa%2C and to Escherichia coli heat shock protein B IbpA SW:IBPA_ECOLI (P29209) (137 aa) fasta scores: E(): 3.1e-22%2C 47.8%25 id in 136 aa gene gene4035 http://www.ncbi.nlm.nih.gov/gene/?term=YPO4084 YPO4085 YPO4085 hslT hslT 4606676 4607089 - heat shock protein Similar to Escherichia coli heat shock protein A IbpA SW:IBPA_ECOLI (P29209) (137 aa) fasta scores: E(): 0%2C82.4%25 id in 136 aa%2C and to Vibrio cholerae heat shock protein A VC0018 TR:Q9KVX0 (EMBL:AE004094) (145 aa) fasta scores: E(): 4.5e-32%2C 56.9%25 id in 137 aa gene gene4036 http://www.ncbi.nlm.nih.gov/gene/?term=YPO4085 YPO4086 YPO4086 YPO4086 4607457 4607795 + putative lipoprotein Similar to Escherichia coli hypothetical protein Yidq or b3688 SW:YIDQ_ECOLI (P31454) (135 aa) fasta scores: E(): 8.5e-15%2C 43.3%25 id in 104 aa. CDS is truncated at the N-terminus in comparison to the E. coli protein gene gene4037 http://www.ncbi.nlm.nih.gov/gene/?term=YPO4086 YPO4087 YPO4087 YPO4087 4607835 4608450 - conserved hypothetical protein (pseudogene) N-terminus is similar to the N-terminal region of Escherichia coli hypothetical protein YidR SW:YIDR_ECOLI (P31455) (416 aa) fasta scores: E(): 7.5e-19%2C 62.6%25 id in 91 aa. C-terminus is similar to C-terminal region of Escherichia coli hypothetical protein YidR SW:YIDR_ECOLI (P31455) (416 aa) fasta scores: E(): 2.2e-16%2C 51.6%25 id in 95 aa. Deletion and frameshift occur after codon 81. The sequence has been checked and is believed to be correct pseudogene gene4038 http://www.ncbi.nlm.nih.gov/gene/?term=YPO4087 YPO4089 YPO4089 YPO4089 4608658 4609620 + pyridoxal-phosphate dependent enzyme Similar to Escherichia coli threonine dehydratase catabolic TdcB SW:THD2_ECOLI (P05792) (329 aa) fasta scores: E(): 0%2C 36.9%25 id in 317 aa%2C and to the N-terminal region of Thermotoga maritima threonine dehydratase catabolic TM0356 TR:Q9WYJ1 (EMBL:AE001716) (401 aa) fasta scores: E(): 0%2C 44.2%25 id in 310 aa gene gene4039 http://www.ncbi.nlm.nih.gov/gene/?term=YPO4089 YPO4090 YPO4090 YPO4090 4609614 4610567 + putative ornithine cyclodeaminase Similar to Rhizobium sp hypothetical cyclodeaminase Y4tK SW:Y4TK_RHISN (P55665) (331 aa) fasta scores: E(): 0%2C36.6%25 id in 303 aa%2C and to an internal region of Brucella abortus ornithine cyclodeaminase ArcB SW:OCD_BRUAB (Q59175) (359 aa) fasta scores: E(): 8.3e-11%2C 26.1%25 id in 245 aa gene gene4040 http://www.ncbi.nlm.nih.gov/gene/?term=YPO4090 YPO4091 YPO4091 YPO4091 4610774 4611289 + insertion element IS1661 DNA-binding protein Similar to Escherichia coli insertion element IS1397 OrfA hypothetical 20.1 kDa protein SW:YI9A_ECOLI (Q47309) (173 aa) fasta scores: E(): 2.3e-20%2C 39.6%25 id in 169 aa gene gene4041 http://www.ncbi.nlm.nih.gov/gene/?term=YPO4091 YPO4092 YPO4092 YPO4092 4611343 4612128 + transposase for insertion sequence IS1661 Similar to Escherichia coli insertion sequence IS1397 transposase%2C OrfB TR:Q47310 (EMBL:X92970) (240 aa) fasta scores: E(): 0%2C 53.0%25 id in 234 aa gene gene4042 http://www.ncbi.nlm.nih.gov/gene/?term=YPO4092 YPO4093 YPO4093 YPO4093 4612519 4613328 - putative haloacid dehalogenase-like hydrolase Similar to Escherichia coli hypothetical protein YidA SW:YIDA_ECOLI (P09997) (270 aa) fasta scores: E(): 0%2C63.8%25 id in 268 aa%2C and to Bacillus subtilis hypothetical protein YxeH SW:YXEH_BACSU (P54947) (270 aa) fasta scores: E(): 0%2C 49.4%25 id in 265 aa gene gene4043 http://www.ncbi.nlm.nih.gov/gene/?term=YPO4093 YPO4094 YPO4094 acrB acrB 4613544 4615958 - DNA gyrase subunit B Similar to Escherichia coli DNA gyrase subunit B GyrB SW:GYRB_ECOLI (P06982) (803 aa) fasta scores: E(): 0%2C86.9%25 id in 803 aa%2C and to Salmonella typhimurium DNA gyrase subunit B gyrB SW:GYRB_SALTY (Q60008) (803 aa) fasta scores: E(): 0%2C 86.3%25 id in 803 aa gene gene4044 http://www.ncbi.nlm.nih.gov/gene/?term=YPO4094 YPO4095 YPO4095 recF recF 4615978 4617063 - DNA metabolism protein Similar to Escherichia coli DNA metabolism protein RecF SW:RECF_ECOLI (P03016) (356 aa) fasta scores: E(): 0%2C79.7%25 id in 354 aa%2C and to Salmonella typhimurium DNA metabolism protein RecF SW:RECF_SALTY (P24900) (354 aa) fasta scores: E(): 0%2C 77.1%25 id in 354 aa gene gene4045 http://www.ncbi.nlm.nih.gov/gene/?term=YPO4095 YPO4096 YPO4096 dnaN dnaN 4617236 4618336 - DNA polymerase III%2C beta subunit protein Similar to Escherichia coli DNA polymerase III%2C beta subunit protein DnaN SW:DP3B_ECOLI (P00583) (366 aa) fasta scores: E(): 0%2C 90.2%25 id in 366 aa%2C and to Salmonella typhimurium DNA polymerase III%2C beta subunit protein DnaN SW:DP3B_SALTY (P26464) (366 aa) fasta scores: E(): 0%2C 89.6%25 id in 366 aa gene gene4046 http://www.ncbi.nlm.nih.gov/gene/?term=YPO4096 YPO4097 YPO4097 dnaA dnaA 4618341 4619729 - chromosomal replication initiator protein Similar to Escherichia coli chromosomal replication initiator protein DnaA SW:DNAA_ECOLI (P03004) (467 aa) fasta scores: E(): 0%2C 91.7%25 id in 468 aa%2C and to Serratia marcescens chromosomal replication initiator protein DnaA SW:DNAA_SERMA (P29440) (464 aa) fasta scores: E(): 0%2C 95.7%25 id in 464 aa gene gene4047 http://www.ncbi.nlm.nih.gov/gene/?term=YPO4097 YPO4098 YPO4098 YPO4098 4619853 4620062 + hypothetical protein no significant database hits gene gene4048 http://www.ncbi.nlm.nih.gov/gene/?term=YPO4098 YPO4100 YPO4100 rimA rimA 4620439 4620579 + 50S ribosomal protein L34 Similar to Escherichia coli 50S ribosomal protein L34 RpmH SW:RL34_ECOLI (P02437) (46 aa) fasta scores: E(): 4.8e-19%2C 95.7%25 id in 46 aa%2C and to Proteus mirabilis 50S ribosomal protein L34 RpmH SW:RL34_PROMI (P22836) (47 aa) fasta scores: E(): 3.8e-18%2C 93.3%25 id in 45 aa gene gene4049 http://www.ncbi.nlm.nih.gov/gene/?term=YPO4100 YPO4101 YPO4101 rnpA rnpA 4620598 4620957 + ribonuclease P protein Similar to Escherichia coli ribonuclease P protein component RnpA SW:RNPA_ECOLI (P06277) (119 aa) fasta scores: E(): 0%2C 88.2%25 id in 119 aa%2C and to Proteus mirabilis ribonuclease P protein component RnpA SW:RNPA_PROMI (P22835) (119 aa) fasta scores: E(): 0%2C 80.7%25 id in 119 aa gene gene4050 http://www.ncbi.nlm.nih.gov/gene/?term=YPO4101 YPO4102 YPO4102 yidC yidC 4621181 4622821 + probable membrane protein Similar to Escherichia coli inner-membrane protein YidC SW:60IM_ECOLI (P25714) (548 aa) fasta scores: E(): 0%2C77.3%25 id in 547 aa%2C and to Buchnera aphidicola (subsp. Acyrthosiphon pisum) inner-membrane protein BU015 SW:60IM_BUCAI (P57131) (532 aa) fasta scores: E(): 0%2C 57.8%25 id in 538 aa gene gene4051 http://www.ncbi.nlm.nih.gov/gene/?term=YPO4102 YPO4103 YPO4103 thdF thdF 4622964 4624328 + putative thiophene and furan oxidation protein Similar to Escherichia coli thiophene and furan oxidation protein ThdF SW:THDF_ECOLI (P25522) (454 aa) fasta scores: E(): 0%2C 88.8%25 id in 454 aa%2C and to Vibrio cholerae thiophene and furan oxidation protein ThdF TR:Q9KVY5 (EMBL:AE004093) (464 aa) fasta scores: E(): 0%2C74.1%25 id in 452 aa gene gene4052 http://www.ncbi.nlm.nih.gov/gene/?term=YPO4103 YPO4104 YPO4104 YPO4104 4624514 4625713 + conserved hypothetical protein Similar to Pseudomonas aeruginosa hypothetical protein PA2950 TR:AAG06338 (EMBL:AE004721) (398 aa) fasta scores: E(): 0%2C 79.4%25 id in 398 aa%2C and to Xylella fastidiosa hypothetical protein XF1835 TR:Q9PCE6 (EMBL:AE004005) (424 aa) fasta scores: E(): 0%2C 57.0%25 id in 395 aa gene gene4053 http://www.ncbi.nlm.nih.gov/gene/?term=YPO4104 YPO4105 YPO4105 YPO4105 4626181 4626456 - putative exported protein No significant database matches. Similar to C-terminal region of YPO2863 (57.0%25 identity in 86 aa overlap) gene gene4054 http://www.ncbi.nlm.nih.gov/gene/?term=YPO4105 YPO4106 YPO4106 YPO4106 4626524 4627144 - hypothetical protein no significant database hits gene gene4055 http://www.ncbi.nlm.nih.gov/gene/?term=YPO4106 YPO4107 YPO4107 yieG yieG 4627689 4629017 - Xanthine/uracil permeases family protein Similar to Escherichia coli hypothetical protein YieG SW:YIEG_ECOLI (P31466) (445 aa) fasta scores: E(): 0%2C86.8%25 id in 432 aa%2C and to Escherichia coli hypothetical protein YicO or b3664 SW:YICO_ECOLI (P31440) (470 aa) fasta scores: E(): 0%2C 76.2%25 id in 445 aa gene gene4056 http://www.ncbi.nlm.nih.gov/gene/?term=YPO4107 YPO4108 YPO4108 YPO4108 4629510 4630178 + putative haloacid dehalogenase-like hydrolase Similar to Escherichia coli hypothetical protein YieH SW:YIEH_ECOLI (P31467) (221 aa) fasta scores: E(): 0%2C62.3%25 id in 220 aa%2C and to Vibrio cholerae CbbY family protein VCA0798 TR:Q9KLE8 (EMBL:AE004407) (226 aa) fasta scores: E(): 3e-26%2C 35.1%25 id in 211 aa gene gene4057 http://www.ncbi.nlm.nih.gov/gene/?term=YPO4108 YPO4109 YPO4109 YPO4109 4630213 4630968 - putative amino acid transport system permease Similar to Escherichia coli glutamine transport system permease protein GlnP SW:GLNP_ECOLI (P10345) (219 aa) fasta scores: E(): 4.2e-18%2C 33.6%25 id in 214 aa%2C and to Pseudomonas aeruginosa probable amino acid permease PA2202 TR:AAG05590 (EMBL:AE004646) (225 aa) fasta scores: E(): 0%2C65.3%25 id in 222 aa gene gene4058 http://www.ncbi.nlm.nih.gov/gene/?term=YPO4109 YPO4110 YPO4110 YPO4110 4630970 4631707 - ABC transporter permease Similar to Pseudomonas aeruginosa probable amino acid permease PA2203 TR:AAG05591 (EMBL:AE004646) (238 aa) fasta scores: E(): 0%2C 64.5%25 id in 234 aa%2C and to Pseudomonas aeruginosa probable permease of ABC transporter PA4194 TR:AAG07581 (EMBL:AE004835) (232 aa) fasta scores: E(): 1.9e-19%2C 42.6%25 id in 230 aa gene gene4059 http://www.ncbi.nlm.nih.gov/gene/?term=YPO4110 YPO4111 YPO4111 YPO4111 4631890 4632744 - putative periplasmic solute-binding protein Similar to Pseudomonas aeruginosa probable binding protein component of ABC transporter PA2204 TR:AAG05592 (EMBL:AE004647) (268 aa) fasta scores: E(): 0%2C 58.4%25 id in 262 aa%2C and to Bacillus subtilis glutamine ABC transporter protein GlnH TR:O34563 (EMBL:Z99117) (273 aa) fasta scores: E(): 1.7e-21%2C 33.6%25 id in 271 aa gene gene4060 http://www.ncbi.nlm.nih.gov/gene/?term=YPO4111 YPO4112 YPO4112 YPO4112 4632964 4633635 - putative membrane protein Poor database matches%2C similar to Proteus mirabilis Ccm1 protein TR:O86433 (EMBL:AJ000084) (228 aa) fasta scores: E(): 1.6e-21%2C 37.7%25 id in 204 aa gene gene4061 http://www.ncbi.nlm.nih.gov/gene/?term=YPO4112 YPO4113 YPO4113 nmpA nmpA 4633931 4634653 - putative phosphate transport system protein Similar to Enterobacter cloacae phosphate transport system protein PhoU SW:PHOU_ENTCL (O32488) (241 aa) fasta scores: E(): 0%2C 91.3%25 id in 240 aa%2C and to Escherichia coli phosphate transport system protein PhoU SW:PHOU_ECOLI (P07656) (241 aa) fasta scores: E(): 0%2C 89.5%25 id in 237 aa gene gene4062 http://www.ncbi.nlm.nih.gov/gene/?term=YPO4113 YPO4114 YPO4114 phoT phoT 4634741 4635517 - putative phosphate transport ATP-binding protein Similar to Escherichia coli phosphate transport ATP-binding protein PstB SW:PSTB_ECOLI (P07655) (257 aa) fasta scores: E(): 0%2C 90.7%25 id in 258 aa%2C and to Enterobacter cloacae peripheral membrane protein PstB TR:O32487 (EMBL:D89963) (257 aa) fasta scores: E(): 0%2C91.5%25 id in 258 aa. Similar to YPO2833 (58.8%25 identity in 250 aa overlap) gene gene4063 http://www.ncbi.nlm.nih.gov/gene/?term=YPO4114 YPO4115 YPO4115 phoT phoT 4635598 4636485 - putative phosphate transport system permease Similar to Escherichia coli phosphate transport system permease protein PstA SW:PSTA_ECOLI (P07654) (296 aa) fasta scores: E(): 0%2C 88.8%25 id in 295 aa%2C and to Enterobacter cloacae integral membrane protein A PstA TR:O32486 (EMBL:D89963) (296 aa) fasta scores: E(): 0%2C89.5%25 id in 295 aa gene gene4064 http://www.ncbi.nlm.nih.gov/gene/?term=YPO4115 YPO4116 YPO4116 phoW phoW 4636487 4637443 - putative phosphate transport system permease Similar to Escherichia coli phosphate transport system permease protein PstC SW:PSTC_ECOLI (P07653) (319 aa) fasta scores: E(): 0%2C 87.7%25 id in 317 aa%2C and to Enterobacter cloacae peripheral membrane protein C PstC TR:O32485 (EMBL:D89963) (319 aa) fasta scores: E(): 0%2C88.0%25 id in 317 aa gene gene4065 http://www.ncbi.nlm.nih.gov/gene/?term=YPO4116 YPO4117 YPO4117 phoS phoS 4637672 4638712 - putative phosphate-binding periplasmic protein Similar to Escherichia coli phosphate-binding periplasmic protein precursor PstS SW:PSTS_ECOLI (P06128) (346 aa) fasta scores: E(): 0%2C 85.3%25 id in 346 aa%2C and to Enterobacter cloacae phosphate-binding protein PstS TR:O32484 (EMBL:D89963) (346 aa) fasta scores: E(): 0%2C83.5%25 id in 346 aa gene gene4066 http://www.ncbi.nlm.nih.gov/gene/?term=YPO4117 YPO4118 YPO4118 glmS glmS 4639195 4641024 - glucosamine--fructose-6-phosphate aminotransferase Similar to Escherichia coli glucosamine--fructose-6-phosphate aminotransferase GlmS SW:GLMS_ECOLI (P17169) (608 aa) fasta scores: E(): 0%2C 85.0%25 id in 608 aa%2C and to Vibrio cholerae glucosamine--fructose-6-phosphate aminotransferase VC0487 TR:Q9KUM8 (EMBL:AE004135) (610 aa) fasta scores: E(): 0%2C73.0%25 id in 610 aa gene gene4067 http://www.ncbi.nlm.nih.gov/gene/?term=YPO4118 YPO4119 YPO4119 glmU glmU 4641225 4642595 - UDP-N-acetylglucosamine pyrophosphorylase Similar to Escherichia coli UDP-N-acetylglucosamine pyrophosphorylase GlmU SW:GLMU_ECOLI (P17114) (456 aa) fasta scores: E(): 0%2C 82.2%25 id in 456 aa%2C and to Haemophilus influenzae UDP-N-acetylglucosamine pyrophosphorylase GlmU SW:GLMU_HAEIN (P43889) (456 aa) fasta scores: E(): 0%2C 68.6%25 id in 456 aa gene gene4068 http://www.ncbi.nlm.nih.gov/gene/?term=YPO4119 YPO4120 YPO4120 atpC atpC 4643216 4643638 - ATP synthase epsilon subunit protein Similar to Escherichia coli ATP synthase epsilon subunit protein AtpC SW:ATPE_ECOLI (P00832) (138 aa) fasta scores: E(): 0%2C 87.7%25 id in 138 aa%2C and to Salmonella typhimurium ATP synthase epsilon subunit protein AtpC TR:Q9RFL2 (EMBL:AF188265) (137 aa) fasta scores: E(): 0%2C87.6%25 id in 137 aa gene gene4069 http://www.ncbi.nlm.nih.gov/gene/?term=YPO4120 YPO4121 YPO4121 atpD atpD 4643660 4645042 - ATP synthase beta subunit protein Similar to Escherichia coli ATP synthase beta subunit protein AtpD SW:ATPB_ECOLI (P00824) (459 aa) fasta scores: E(): 0%2C 93.2%25 id in 459 aa%2C and to Salmonella typhimurium ATP synthase beta subunit protein AtpD TR:Q9RFL3 (EMBL:AF188265) (460 aa) fasta scores: E(): 0%2C93.0%25 id in 460 aa gene gene4070 http://www.ncbi.nlm.nih.gov/gene/?term=YPO4121 YPO4122 YPO4122 atpG atpG 4645198 4646061 - ATP synthase gamma subunit protein Similar to Escherichia coli ATP synthase gamma subunit protein AtpG SW:ATPG_ECOLI (P00837) (287 aa) fasta scores: E(): 0%2C 90.6%25 id in 287 aa%2C and to Salmonella typhimurium ATP synthase gamma subunit protein AtpG TR:Q9RFL4 (EMBL:AF188265) (287 aa) fasta scores: E(): 0%2C90.6%25 id in 287 aa gene gene4071 http://www.ncbi.nlm.nih.gov/gene/?term=YPO4122 YPO4123 YPO4123 atpA atpA 4646123 4647664 - ATP synthase alpha subunit protein Similar to Escherichia coli ATP synthase alpha subunit protein AtpA SW:ATPA_ECOLI (P00822) (513 aa) fasta scores: E(): 0%2C 93.6%25 id in 513 aa%2C and to Salmonella typhimurium the ATP synthase alpha subunit protein AtpA TR:Q9RFL5 (EMBL:AF188265) (513 aa) fasta scores: E(): 0%2C93.2%25 id in 513 aa gene gene4072 http://www.ncbi.nlm.nih.gov/gene/?term=YPO4123 YPO4124 YPO4124 atpH atpH 4647679 4648212 - ATP synthase delta subunit protein Similar to Escherichia coli ATP synthase delta subunit protein AtpH SW:ATPD_ECOLI (P00831) (177 aa) fasta scores: E(): 0%2C 80.8%25 id in 177 aa%2C and to Salmonella typhimurium ATP synthase delta subunit protein AtpH TR:Q9RFL6 (EMBL:AF188265) (177 aa) fasta scores: E(): 0%2C80.2%25 id in 177 aa gene gene4073 http://www.ncbi.nlm.nih.gov/gene/?term=YPO4124 YPO4125 YPO4125 atpF atpF 4648227 4648697 - ATP synthase subunit B protein Similar to Escherichia coli ATP synthase subunit B protein AtpF SW:ATPF_ECOLI (P00859) (156 aa) fasta scores: E(): 0%2C 90.4%25 id in 156 aa%2C and to Salmonella typhimurium ATP synthase subunit B protein AtpF TR:Q9RFL7 (EMBL:AF188265) (156 aa) fasta scores: E(): 0%2C 89.1%25 id in 156 aa gene gene4074 http://www.ncbi.nlm.nih.gov/gene/?term=YPO4125 YPO4126 YPO4126 atpE atpE 4648759 4648998 - ATP synthase subunit C protein Identical to Escherichia coli and Salmonella typhimurium ATP synthase subunit C protein AtpE SW:ATPL_ECOLI (P00844) (79 aa) fasta scores: E(): 2.9e-27%2C100.0%25 id in 79 aa. Similar to Buchnera aphidicola (subsp. Acyrthosiphon pisum) ATP synthase subunit C protein AtpE SW:ATPL_BUCAI (P57119) (79 aa) fasta scores: E(): 2.7e-24%2C83.5%25 id in 79 aa gene gene4075 http://www.ncbi.nlm.nih.gov/gene/?term=YPO4126 YPO4127 YPO4127 atpB atpB 4649048 4649872 - ATP synthase subunit B protein Similar to Escherichia coli ATP synthase subunit A protein AtpB SW:ATP6_ECOLI (P00855) (271 aa) fasta scores: E(): 0%2C 84.1%25 id in 271 aa%2C and to Salmonella typhimurium ATP synthase subunit A protein AtpB TR:Q9RFL8 (EMBL:AF188265) (271 aa) fasta scores: E(): 0%2C 83.8%25 id in 271 aa gene gene4076 http://www.ncbi.nlm.nih.gov/gene/?term=YPO4127 YPO4128 YPO4128 atpI atpI 4649912 4650295 - ATP synthase protein I Similar to Escherichia coli ATP synthase protein I AtpI SW:ATPZ_ECOLI (P03808) (125 aa) fasta scores: E(): 2.4e-24%2C 55.4%25 id in 121 aa%2C and to Salmonella typhimurium ATP synthase subunit I AtpI TR:Q9RFL9 (EMBL:AF188265) (130 aa) fasta scores: E(): 9.3e-25%2C 55.3%25 id in 123 aa gene gene4077 http://www.ncbi.nlm.nih.gov/gene/?term=YPO4128 YPO4129 YPO4129 gidB gidB 4650962 4651582 - glucose inhibited division protein B Similar to Escherichia coli glucose inhibited division protein B GidB SW:GIDB_ECOLI (P17113) (207 aa) fasta scores: E(): 0%2C 77.2%25 id in 206 aa%2C and to Vibrio cholerae glucose inhibited division protein B VC2774 TR:Q9KNG5 (EMBL:AE004343) (210 aa) fasta scores: E(): 0%2C66.0%25 id in 200 aa gene gene4078 http://www.ncbi.nlm.nih.gov/gene/?term=YPO4129 YPO4130 YPO4130 gidA gidA 4651728 4653617 - glucose inhibited division protein A Similar to Escherichia coli glucose inhibited division protein A GidA SW:GIDA_ECOLI (P17112) (629 aa) fasta scores: E(): 0%2C 86.0%25 id in 629 aa%2C and to Vibrio cholerae glucose inhibited division protein A GidA TR:Q9KNG4 (EMBL:AE004343) (631 aa) fasta scores: E(): 0%2C75.6%25 id in 627 aa gene gene4079 http://www.ncbi.nlm.nih.gov/gene/?term=YPO4130